Query 011749
Match_columns 478
No_of_seqs 321 out of 1649
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 04:48:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011749.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011749hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 4.2E-73 9.2E-78 593.3 40.0 382 65-478 21-428 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 3.1E-57 6.8E-62 470.4 37.3 325 145-478 42-396 (398)
3 cd05472 cnd41_like Chloroplast 100.0 3.4E-55 7.4E-60 438.7 31.6 284 149-478 1-299 (299)
4 cd05489 xylanase_inhibitor_I_l 100.0 6.7E-55 1.4E-59 446.6 30.0 305 156-476 2-361 (362)
5 cd06096 Plasmepsin_5 Plasmepsi 100.0 4E-52 8.7E-57 421.5 29.9 282 148-478 2-325 (326)
6 cd05490 Cathepsin_D2 Cathepsin 100.0 1.8E-51 3.9E-56 416.5 32.8 288 146-475 3-325 (325)
7 cd05478 pepsin_A Pepsin A, asp 100.0 1.2E-51 2.6E-56 416.5 30.9 283 147-475 8-317 (317)
8 PTZ00165 aspartyl protease; Pr 100.0 7.1E-51 1.5E-55 428.6 36.1 296 135-478 109-448 (482)
9 cd05477 gastricsin Gastricsins 100.0 4.5E-51 9.8E-56 412.4 32.3 286 147-476 1-318 (318)
10 cd05486 Cathespin_E Cathepsin 100.0 6.8E-51 1.5E-55 410.8 30.9 283 150-475 1-316 (316)
11 cd05488 Proteinase_A_fungi Fun 100.0 1.4E-49 3.1E-54 401.9 32.3 283 146-475 7-320 (320)
12 cd06098 phytepsin Phytepsin, a 100.0 1.7E-49 3.6E-54 400.8 31.7 276 145-475 6-317 (317)
13 cd05487 renin_like Renin stimu 100.0 1.7E-49 3.7E-54 402.3 31.8 287 146-476 5-326 (326)
14 cd05485 Cathepsin_D_like Cathe 100.0 3.1E-49 6.8E-54 400.8 32.7 286 145-475 7-329 (329)
15 cd05473 beta_secretase_like Be 100.0 1.4E-48 2.9E-53 401.5 29.3 300 148-478 2-347 (364)
16 PTZ00147 plasmepsin-1; Provisi 100.0 6.5E-48 1.4E-52 403.3 33.6 292 135-477 128-450 (453)
17 cd05476 pepsin_A_like_plant Ch 100.0 6.5E-48 1.4E-52 379.6 27.3 248 149-478 1-265 (265)
18 cd05475 nucellin_like Nucellin 100.0 5.4E-48 1.2E-52 381.8 26.6 243 148-478 1-273 (273)
19 PTZ00013 plasmepsin 4 (PM4); P 100.0 1.5E-46 3.3E-51 392.3 33.5 291 136-477 128-449 (450)
20 cd06097 Aspergillopepsin_like 100.0 1.8E-45 3.8E-50 364.7 26.0 251 150-475 1-278 (278)
21 cd05474 SAP_like SAPs, pepsin- 100.0 6.6E-44 1.4E-48 355.9 27.7 260 149-476 2-295 (295)
22 PF00026 Asp: Eukaryotic aspar 100.0 1E-43 2.2E-48 357.2 23.6 284 149-476 1-317 (317)
23 cd05471 pepsin_like Pepsin-lik 100.0 2.5E-42 5.4E-47 341.1 27.6 256 150-475 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 1.7E-30 3.7E-35 237.5 12.8 145 150-303 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 100.0 2.5E-29 5.4E-34 229.3 14.8 151 323-475 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 4.2E-22 9.1E-27 169.3 11.8 99 152-268 1-109 (109)
27 cd05483 retropepsin_like_bacte 97.8 5.7E-05 1.2E-09 61.7 7.2 87 148-270 1-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 95.8 0.064 1.4E-06 46.4 8.8 88 147-270 9-103 (121)
29 PF13650 Asp_protease_2: Aspar 95.5 0.076 1.6E-06 42.4 8.0 82 152-269 1-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 94.0 0.19 4.2E-06 43.5 6.9 94 355-473 30-124 (124)
31 cd05479 RP_DDI RP_DDI; retrope 92.4 0.79 1.7E-05 39.6 8.4 34 147-182 14-47 (124)
32 cd05484 retropepsin_like_LTR_2 91.2 0.22 4.8E-06 40.4 3.4 28 150-179 1-28 (91)
33 TIGR03698 clan_AA_DTGF clan AA 89.5 1.6 3.6E-05 36.7 7.3 24 448-471 84-107 (107)
34 PF08284 RVP_2: Retroviral asp 89.2 1.1 2.3E-05 39.6 6.2 98 354-476 34-132 (135)
35 PF11925 DUF3443: Protein of u 87.2 6.9 0.00015 40.0 11.2 31 149-179 23-58 (370)
36 PF13975 gag-asp_proteas: gag- 86.6 1.1 2.4E-05 34.7 4.2 34 147-182 6-39 (72)
37 PF00077 RVP: Retroviral aspar 83.4 1.5 3.2E-05 35.9 3.8 28 151-180 7-34 (100)
38 TIGR02281 clan_AA_DTGA clan AA 83.3 2.5 5.5E-05 36.4 5.3 36 321-374 9-44 (121)
39 cd05484 retropepsin_like_LTR_2 79.2 3.3 7.2E-05 33.4 4.4 30 331-375 5-34 (91)
40 PF12384 Peptidase_A2B: Ty3 tr 77.6 18 0.00039 32.9 8.7 22 354-375 47-68 (177)
41 PF13650 Asp_protease_2: Aspar 76.2 3.6 7.7E-05 32.5 3.7 20 355-374 12-31 (90)
42 cd05483 retropepsin_like_bacte 73.6 6.3 0.00014 31.4 4.6 29 331-374 7-35 (96)
43 cd05482 HIV_retropepsin_like R 71.8 4.3 9.4E-05 32.9 3.1 25 153-179 2-26 (87)
44 cd06095 RP_RTVL_H_like Retrope 66.7 6.4 0.00014 31.5 3.2 26 153-180 2-27 (86)
45 COG3577 Predicted aspartyl pro 65.2 15 0.00032 34.6 5.6 32 146-179 102-133 (215)
46 cd06094 RP_Saci_like RP_Saci_l 60.7 39 0.00085 27.5 6.6 80 351-461 8-88 (89)
47 PF13975 gag-asp_proteas: gag- 60.0 14 0.00029 28.6 3.8 29 331-374 13-41 (72)
48 cd06095 RP_RTVL_H_like Retrope 57.3 14 0.00031 29.4 3.6 29 331-374 3-31 (86)
49 cd05481 retropepsin_like_LTR_1 38.7 36 0.00078 27.7 3.2 22 354-375 12-33 (93)
50 PF12384 Peptidase_A2B: Ty3 tr 38.2 41 0.00089 30.6 3.7 28 152-179 35-62 (177)
51 PF02160 Peptidase_A3: Caulifl 35.5 60 0.0013 30.6 4.5 27 447-474 90-116 (201)
52 PF00077 RVP: Retroviral aspar 35.3 35 0.00077 27.6 2.7 27 330-371 9-35 (100)
53 COG3577 Predicted aspartyl pro 33.9 87 0.0019 29.6 5.2 44 311-374 95-138 (215)
54 PF15240 Pro-rich: Proline-ric 33.8 31 0.00066 31.8 2.2 24 3-26 1-24 (179)
55 PF09668 Asp_protease: Asparty 29.1 73 0.0016 27.6 3.7 29 331-374 29-57 (124)
56 COG5550 Predicted aspartyl pro 29.1 41 0.00089 29.1 2.1 21 355-375 29-50 (125)
57 PF09668 Asp_protease: Asparty 27.8 96 0.0021 26.9 4.2 35 148-184 23-57 (124)
58 cd05481 retropepsin_like_LTR_1 26.0 46 0.001 27.1 1.9 18 161-178 9-26 (93)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=4.2e-73 Score=593.29 Aligned_cols=382 Identities=37% Similarity=0.700 Sum_probs=318.7
Q ss_pred CCCceEEEEecCCCCCCC---CCCCchhHHHHHHHHhHHhHHHHHHHhhhhhcccccCCCCCCCCCCcccccceeecccc
Q 011749 65 SSSSLALQLHSRTSVQRT---SHNDYKSLTLARLERDSARVRSLSARLDLAIRGIATSDLKPLDSGSEFEAEEIQGPIVS 141 (478)
Q Consensus 65 ~~~~~~~~l~h~~~~~~~---~~~~~~~~~~~~~~~d~~R~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 141 (478)
..++++++|+||+++|+| +..+..++++++++||++|+++|.++... ..|+.+
T Consensus 21 ~~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~------------------------~~~~~~ 76 (431)
T PLN03146 21 PKGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDAS------------------------PNDPQS 76 (431)
T ss_pred cCCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhcccc------------------------CCcccc
Confidence 345799999999999875 33456688999999999999888654211 123334
Q ss_pred CcCCCCeeEEEEEEecCCCcEEEEEEeCCCCcceEeCCCCCCccCCCCCCCCCCCCCCccccCCCCcccCCCCCC-CcCC
Q 011749 142 GSSQGSGEYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTKQCQSLDES-ECRN 220 (478)
Q Consensus 142 ~~~~~~g~Y~v~i~iGTP~q~~~lilDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~-~C~~ 220 (478)
+...++++|+++|.||||||++.|+|||||+++||+|.+|..|+.|.++.|||++|+||+.++|.++.|..+... .|..
T Consensus 77 ~~~~~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~ 156 (431)
T PLN03146 77 DLISNGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSD 156 (431)
T ss_pred CcccCCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCC
Confidence 444567899999999999999999999999999999999999999999999999999999999999999987654 4754
Q ss_pred -CCceeEEEcCCCcEE-------EEEECC-----eeeeeeEEEEEEcCCCCcc-CCCeEEecCCCCCCcccccC---CCe
Q 011749 221 -NTCLYEVSYGDGSYT-------TVTLGS-----ASVDNIAIGCGHNNEGLFV-GAAGLLGLGGGLLSFPSQIN---AST 283 (478)
Q Consensus 221 -~~c~y~~~Ygdgs~~-------tltlg~-----~~v~~~~fGc~~~~~g~~~-~~~GIlGLg~~~~S~~sql~---~~~ 283 (478)
+.|.|.+.|+||+.+ +|+|++ ..++++.|||++.+.|.|. ..+||||||++++|+++|+. .++
T Consensus 157 ~~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~~ 236 (431)
T PLN03146 157 ENTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGK 236 (431)
T ss_pred CCCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCCc
Confidence 469999999999865 899986 4689999999999888775 47999999999999999986 468
Q ss_pred eEEEeeCCCC--CCceEEEeCCCCCC---CCeeeecccCCCCCeeEEEEEeEEEEcCeEeecCCcccccccCCCCcEEEc
Q 011749 284 FSYCLVDRDS--DSTSTLEFDSSLPP---NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVD 358 (478)
Q Consensus 284 FS~cL~~~~~--~~~g~L~fG~~d~~---~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~~~~~~~~~~~~iiD 358 (478)
|||||++..+ ...|.|+||+.... ++.||||+.+.. +.+|+|+|++|+||+++++++...|. ..+.+++|||
T Consensus 237 FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~-~~~y~V~L~gIsVgg~~l~~~~~~~~--~~~~g~~iiD 313 (431)
T PLN03146 237 FSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDP-DTFYYLTLEAISVGSKKLPYTGSSKN--GVEEGNIIID 313 (431)
T ss_pred EEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCC-CCeEEEeEEEEEECCEECcCCccccc--cCCCCcEEEe
Confidence 9999975432 34699999986432 589999986532 57999999999999999998877765 3456789999
Q ss_pred cCcceeeecHHHHHHHHHHHHhhccCCCCCCCccccccccccCCCCccccceEEEEeCCCcEEEeCCCceEEEecCCCcE
Q 011749 359 SGTAVTRLQTETYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNFLIPVDSNGTF 438 (478)
Q Consensus 359 SGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~l~f~f~gg~~~~l~~~~yl~~~~~~~~~ 438 (478)
|||++++||+++|++|+++|.+++...+.......+++||+... ...+|+|+||| +|+++.|++++|+++.+ ++.+
T Consensus 314 SGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~--~~~~P~i~~~F-~Ga~~~l~~~~~~~~~~-~~~~ 389 (431)
T PLN03146 314 SGTTLTLLPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTS--DIKLPIITAHF-TGADVKLQPLNTFVKVS-EDLV 389 (431)
T ss_pred CCccceecCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCCC--CCCCCeEEEEE-CCCeeecCcceeEEEcC-CCcE
Confidence 99999999999999999999988764433333334678998532 25789999999 68999999999999876 4678
Q ss_pred EEEEEeCCCCceEecHhhhcceEEEEeCCCCEEEEeeCCC
Q 011749 439 CFAFAPTSSSLSIIGNVQQQGTRVSFNLRNSLVGFTPNKC 478 (478)
Q Consensus 439 Cl~~~~~~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~C 478 (478)
|+++.+. .+.+|||+.|||++||+||++++||||++.+|
T Consensus 390 Cl~~~~~-~~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C 428 (431)
T PLN03146 390 CFAMIPT-SSIAIFGNLAQMNFLVGYDLESKTVSFKPTDC 428 (431)
T ss_pred EEEEecC-CCceEECeeeEeeEEEEEECCCCEEeeecCCc
Confidence 9999876 35699999999999999999999999999999
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-57 Score=470.37 Aligned_cols=325 Identities=45% Similarity=0.832 Sum_probs=273.4
Q ss_pred CCCeeEEEEEEecCCCcEEEEEEeCCCCcceEeCCCCC-CccCCCCCCCCCCCCCCccccCCCCcccCCCCCCCcCCCCc
Q 011749 145 QGSGEYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCA-DCYQQADPIFEPTSSSSYSPLTCNTKQCQSLDESECRNNTC 223 (478)
Q Consensus 145 ~~~g~Y~v~i~iGTP~q~~~lilDTGS~~~Wv~~~~C~-~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~C~~~~c 223 (478)
..+++|+++|.||||||.|.|+|||||+++||+|.+|. .|+.+.++.|||++|+||+.+.|.++.|..+....|.++.|
T Consensus 42 ~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~~~~~~~C 121 (398)
T KOG1339|consen 42 YSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQSCSPNSSC 121 (398)
T ss_pred ccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCccccccccCcccCCcC
Confidence 45689999999999999999999999999999999999 89987777799999999999999999999998775667789
Q ss_pred eeEEEcCCCcEE-------EEEECC---eeeeeeEEEEEEcCCCC-c--cCCCeEEecCCCCCCcccccC-----CCeeE
Q 011749 224 LYEVSYGDGSYT-------TVTLGS---ASVDNIAIGCGHNNEGL-F--VGAAGLLGLGGGLLSFPSQIN-----ASTFS 285 (478)
Q Consensus 224 ~y~~~Ygdgs~~-------tltlg~---~~v~~~~fGc~~~~~g~-~--~~~~GIlGLg~~~~S~~sql~-----~~~FS 285 (478)
.|.+.||||+.+ +|++++ ..++++.|||++.+.+. . ...+||||||++.+|+.+|+. .++||
T Consensus 122 ~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~q~~~~~~~~~~FS 201 (398)
T KOG1339|consen 122 PYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGSLSVPSQLPSFYNAINVFS 201 (398)
T ss_pred ceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccccccccccceEeecCCCCccceeecccccCCceeEE
Confidence 999999996644 899997 77888999999999763 2 347999999999999999988 33599
Q ss_pred EEeeCCCCC--CceEEEeCCCCCC----CCeeeecccCCCCCeeEEEEEeEEEEcCeEeecCCcccccccCCCCcEEEcc
Q 011749 286 YCLVDRDSD--STSTLEFDSSLPP----NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDS 359 (478)
Q Consensus 286 ~cL~~~~~~--~~g~L~fG~~d~~----~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~~~~~~~~~~~~iiDS 359 (478)
|||.+.+.. ..|.|+||+.|.. .+.||||+.++. .+|+|.|++|+||++. .+++..+..+ .+++||||
T Consensus 202 ~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~--~~y~v~l~~I~vgg~~-~~~~~~~~~~---~~~~iiDS 275 (398)
T KOG1339|consen 202 YCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPS--TYYQVNLDGISVGGKR-PIGSSLFCTD---GGGAIIDS 275 (398)
T ss_pred EEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCC--ccEEEEEeEEEECCcc-CCCcceEecC---CCCEEEEC
Confidence 999876543 4799999999987 589999999753 6999999999999988 7776766532 58899999
Q ss_pred CcceeeecHHHHHHHHHHHHhhccCCCCCCCccccccccccCCCCccccceEEEEeCCCcEEEeCCCceEEEecCCCcEE
Q 011749 360 GTAVTRLQTETYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNFLIPVDSNGTFC 439 (478)
Q Consensus 360 GTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~l~f~f~gg~~~~l~~~~yl~~~~~~~~~C 439 (478)
||++++||+++|++|.++|.+.+. .....+ ..+..|+...... ..+|.|+|+|.+|+.|.|++++|+++.+.....|
T Consensus 276 GTs~t~lp~~~y~~i~~~~~~~~~-~~~~~~-~~~~~C~~~~~~~-~~~P~i~~~f~~g~~~~l~~~~y~~~~~~~~~~C 352 (398)
T KOG1339|consen 276 GTSLTYLPTSAYNALREAIGAEVS-VVGTDG-EYFVPCFSISTSG-VKLPDITFHFGGGAVFSLPPKNYLVEVSDGGGVC 352 (398)
T ss_pred CcceeeccHHHHHHHHHHHHhhee-ccccCC-ceeeecccCCCCc-ccCCcEEEEECCCcEEEeCccceEEEECCCCCce
Confidence 999999999999999999987641 111122 2344799876433 4599999999659999999999999877422229
Q ss_pred EEEEeCCC--CceEecHhhhcceEEEEeCC-CCEEEEee--CCC
Q 011749 440 FAFAPTSS--SLSIIGNVQQQGTRVSFNLR-NSLVGFTP--NKC 478 (478)
Q Consensus 440 l~~~~~~~--~~~IlG~~fl~~~yvvfD~~-~~rIGFa~--~~C 478 (478)
+++..... ..||||+.|||+++++||+. ++||||++ ..|
T Consensus 353 l~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c 396 (398)
T KOG1339|consen 353 LAFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNC 396 (398)
T ss_pred eeEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccC
Confidence 97665432 47999999999999999999 99999999 776
No 3
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=3.4e-55 Score=438.65 Aligned_cols=284 Identities=54% Similarity=0.947 Sum_probs=242.0
Q ss_pred eEEEEEEecCCCcEEEEEEeCCCCcceEeCCCCCCccCCCCCCCCCCCCCCccccCCCCcccCCCCCCCcCCCCceeEEE
Q 011749 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTKQCQSLDESECRNNTCLYEVS 228 (478)
Q Consensus 149 ~Y~v~i~iGTP~q~~~lilDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~C~~~~c~y~~~ 228 (478)
+|+++|.||||||++.|+|||||+++||+|.+| |.|.+.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c-----------------------------------------~~~~i~ 39 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC-----------------------------------------CLYQVS 39 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC-----------------------------------------CeeeeE
Confidence 699999999999999999999999999988765 478999
Q ss_pred cCCCcEE-------EEEECCe-eeeeeEEEEEEcCCCCccCCCeEEecCCCCCCcccccC---CCeeEEEeeCCCCCCce
Q 011749 229 YGDGSYT-------TVTLGSA-SVDNIAIGCGHNNEGLFVGAAGLLGLGGGLLSFPSQIN---ASTFSYCLVDRDSDSTS 297 (478)
Q Consensus 229 Ygdgs~~-------tltlg~~-~v~~~~fGc~~~~~g~~~~~~GIlGLg~~~~S~~sql~---~~~FS~cL~~~~~~~~g 297 (478)
|+||+.. +|+|++. .++++.|||++.+.+.+...+||||||++.+|+++|+. .++||+||.+......|
T Consensus 40 Yg~Gs~~~G~~~~D~v~ig~~~~~~~~~Fg~~~~~~~~~~~~~GilGLg~~~~s~~~ql~~~~~~~FS~~L~~~~~~~~G 119 (299)
T cd05472 40 YGDGSYTTGDLATDTLTLGSSDVVPGFAFGCGHDNEGLFGGAAGLLGLGRGKLSLPSQTASSYGGVFSYCLPDRSSSSSG 119 (299)
T ss_pred eCCCceEEEEEEEEEEEeCCCCccCCEEEECCccCCCccCCCCEEEECCCCcchHHHHhhHhhcCceEEEccCCCCCCCc
Confidence 9999864 8999987 89999999999888777778999999999999999886 57999999754334579
Q ss_pred EEEeCCCCCC--CCeeeecccCCCCCeeEEEEEeEEEEcCeEeecCCcccccccCCCCcEEEccCcceeeecHHHHHHHH
Q 011749 298 TLEFDSSLPP--NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNALR 375 (478)
Q Consensus 298 ~L~fG~~d~~--~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l~ 375 (478)
+|+||++|+. ++.|+|++.++....+|.|+|++|+||++.+.+++.. ...+++||||||++++||+++|++|.
T Consensus 120 ~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~-----~~~~~~ivDSGTt~~~lp~~~~~~l~ 194 (299)
T cd05472 120 YLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPAS-----FGAGGVIIDSGTVITRLPPSAYAALR 194 (299)
T ss_pred eEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccc-----cCCCCeEEeCCCcceecCHHHHHHHH
Confidence 9999999984 8999999987644579999999999999988764322 23568999999999999999999999
Q ss_pred HHHHhhccCCCCCCCccccccccccCCCCccccceEEEEeCCCcEEEeCCCceEEEecCCCcEEEEEEeCC--CCceEec
Q 011749 376 DAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNFLIPVDSNGTFCFAFAPTS--SSLSIIG 453 (478)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~l~f~f~gg~~~~l~~~~yl~~~~~~~~~Cl~~~~~~--~~~~IlG 453 (478)
+++.+.+...+...+...++.||+.++.....+|+|+|+|.+|++++|++++|+++....+..|+++...+ .+.+|||
T Consensus 195 ~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~~~~~C~~~~~~~~~~~~~ilG 274 (299)
T cd05472 195 DAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDDSSQVCLAFAGTSDDGGLSIIG 274 (299)
T ss_pred HHHHHHhccCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEecCCCCEEEEEeCCCCCCCCEEEc
Confidence 99988765443334444566799876555567999999996589999999999985444567899887653 4579999
Q ss_pred HhhhcceEEEEeCCCCEEEEeeCCC
Q 011749 454 NVQQQGTRVSFNLRNSLVGFTPNKC 478 (478)
Q Consensus 454 ~~fl~~~yvvfD~~~~rIGFa~~~C 478 (478)
+.|||++|+|||++++|||||+.+|
T Consensus 275 ~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 275 NVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred hHHccceEEEEECCCCEEeEecCCC
Confidence 9999999999999999999999999
No 4
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=6.7e-55 Score=446.63 Aligned_cols=305 Identities=27% Similarity=0.475 Sum_probs=252.2
Q ss_pred ecCCCcE-EEEEEeCCCCcceEeCCCCCCccCCCCCCCCCCCCCCccccCCCCcccCCCCC------------CCcCCCC
Q 011749 156 IGKPPSQ-VYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTKQCQSLDE------------SECRNNT 222 (478)
Q Consensus 156 iGTP~q~-~~lilDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~------------~~C~~~~ 222 (478)
+|||-.+ +.|+|||||+++||||.+ .+|+||+.++|+++.|+.+.. ..|.++.
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~--------------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~~ 67 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA--------------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNNT 67 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC--------------CCcCCCCccCcCChhhccccccCCCccccCCCCCCCCCCc
Confidence 5888777 999999999999999975 358899999999999987642 2576677
Q ss_pred ceeEEE-cCCCcEE-------EEEECC--------eeeeeeEEEEEEcCC--CCccCCCeEEecCCCCCCcccccC----
Q 011749 223 CLYEVS-YGDGSYT-------TVTLGS--------ASVDNIAIGCGHNNE--GLFVGAAGLLGLGGGLLSFPSQIN---- 280 (478)
Q Consensus 223 c~y~~~-Ygdgs~~-------tltlg~--------~~v~~~~fGc~~~~~--g~~~~~~GIlGLg~~~~S~~sql~---- 280 (478)
|.|... |++|+.+ +|+|+. ..++++.|||++++. +.+..++||||||++++|+++|+.
T Consensus 68 C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~~~ 147 (362)
T cd05489 68 CTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASAFG 147 (362)
T ss_pred CeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhhhcC
Confidence 999765 7788666 888863 368999999998864 445568999999999999999987
Q ss_pred -CCeeEEEeeCCCCCCceEEEeCCCCC----------CCCeeeecccCCCCCeeEEEEEeEEEEcCeEeecCCccccccc
Q 011749 281 -ASTFSYCLVDRDSDSTSTLEFDSSLP----------PNAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDE 349 (478)
Q Consensus 281 -~~~FS~cL~~~~~~~~g~L~fG~~d~----------~~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~~~~~~ 349 (478)
.++|||||++. ....|.|+||+.+. ..++||||+.++..+.+|+|+|++|+||++++++++..+.++.
T Consensus 148 ~~~~FS~CL~~~-~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~ 226 (362)
T cd05489 148 VARKFALCLPSS-PGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDR 226 (362)
T ss_pred CCcceEEEeCCC-CCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccc
Confidence 27899999754 23479999999874 2789999998764467999999999999999998888777666
Q ss_pred CCCCcEEEccCcceeeecHHHHHHHHHHHHhhccCCCCCCCc-cccccccccCCCC----ccccceEEEEeCC-CcEEEe
Q 011749 350 SGNGGIIVDSGTAVTRLQTETYNALRDAFVRGTRALSPTDGV-ALFDTCYDFSSRS----SVEVPTVSFHFPE-GKVLPL 423 (478)
Q Consensus 350 ~~~~~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~-~~~~~C~~~~~~~----~~~~P~l~f~f~g-g~~~~l 423 (478)
.+.+++||||||++|+||+++|++|+++|.+++...+..... ...+.||+..... ...+|+|+|||+| |++|+|
T Consensus 227 ~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~~l 306 (362)
T cd05489 227 LGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNWTI 306 (362)
T ss_pred cCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCCCeEEEE
Confidence 677899999999999999999999999999887654332221 2236899854321 3579999999976 799999
Q ss_pred CCCceEEEecCCCcEEEEEEeCC---CCceEecHhhhcceEEEEeCCCCEEEEeeC
Q 011749 424 PAKNFLIPVDSNGTFCFAFAPTS---SSLSIIGNVQQQGTRVSFNLRNSLVGFTPN 476 (478)
Q Consensus 424 ~~~~yl~~~~~~~~~Cl~~~~~~---~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~ 476 (478)
++++|+++.. ++.+|++|.+.+ ...||||+.|||++|++||++++|||||+.
T Consensus 307 ~~~ny~~~~~-~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 307 FGANSMVQVK-GGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred cCCceEEEcC-CCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 9999999876 467899998764 357999999999999999999999999974
No 5
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=4e-52 Score=421.47 Aligned_cols=282 Identities=27% Similarity=0.483 Sum_probs=235.7
Q ss_pred eeEEEEEEecCCCcEEEEEEeCCCCcceEeCCCCCCccCCCCCCCCCCCCCCccccCCCCcccCCCCCCCcCCCCceeEE
Q 011749 148 GEYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTKQCQSLDESECRNNTCLYEV 227 (478)
Q Consensus 148 g~Y~v~i~iGTP~q~~~lilDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~C~~~~c~y~~ 227 (478)
++|+++|.||||+|++.|+|||||+++||+|..|..|..+.++.|||++|+|++.+.|.+..|.. ...|.++.|.|.+
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~--~~~~~~~~~~~~i 79 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCY--CLSCLNNKCEYSI 79 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCccccc--cCcCCCCcCcEEE
Confidence 68999999999999999999999999999999999998888899999999999999999999953 3457777899999
Q ss_pred EcCCCcEE-------EEEECCeeee-------eeEEEEEEcCCCCcc--CCCeEEecCCCCCCcc--------cc--cC-
Q 011749 228 SYGDGSYT-------TVTLGSASVD-------NIAIGCGHNNEGLFV--GAAGLLGLGGGLLSFP--------SQ--IN- 280 (478)
Q Consensus 228 ~Ygdgs~~-------tltlg~~~v~-------~~~fGc~~~~~g~~~--~~~GIlGLg~~~~S~~--------sq--l~- 280 (478)
.|+||+.. +|+|++..++ ++.|||+....+.|. ..+||||||+...+.. .| +.
T Consensus 80 ~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~l~~~~~~~~ 159 (326)
T cd06096 80 SYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLPTPIILLFTKRPKLK 159 (326)
T ss_pred EECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccccccceEEEccCCcccccCchhHHHHHhccccc
Confidence 99999743 8999876543 578999998877653 4799999999875321 12 11
Q ss_pred -CCeeEEEeeCCCCCCceEEEeCCCCCC--------------CCeeeecccCCCCCeeEEEEEeEEEEcCeEeecCCccc
Q 011749 281 -ASTFSYCLVDRDSDSTSTLEFDSSLPP--------------NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAF 345 (478)
Q Consensus 281 -~~~FS~cL~~~~~~~~g~L~fG~~d~~--------------~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~~ 345 (478)
.++||+||.+ ..|.|+||++|+. ++.|+|+.. ..+|.|.+++|+|+++.....
T Consensus 160 ~~~~FS~~l~~----~~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~----~~~y~v~l~~i~vg~~~~~~~---- 227 (326)
T cd06096 160 KDKIFSICLSE----DGGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITR----KYYYYVKLEGLSVYGTTSNSG---- 227 (326)
T ss_pred CCceEEEEEcC----CCeEEEECccChhhhcccccccccccCCceEEeccC----CceEEEEEEEEEEccccccee----
Confidence 3899999963 2599999998853 578999976 368999999999998861110
Q ss_pred ccccCCCCcEEEccCcceeeecHHHHHHHHHHHHhhccCCCCCCCccccccccccCCCCccccceEEEEeCCCcEEEeCC
Q 011749 346 KIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPA 425 (478)
Q Consensus 346 ~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~l~f~f~gg~~~~l~~ 425 (478)
......+||||||++++||+++|++|.+++ |+|+|+|++|+.++++|
T Consensus 228 ---~~~~~~aivDSGTs~~~lp~~~~~~l~~~~------------------------------P~i~~~f~~g~~~~i~p 274 (326)
T cd06096 228 ---NTKGLGMLVDSGSTLSHFPEDLYNKINNFF------------------------------PTITIIFENNLKIDWKP 274 (326)
T ss_pred ---cccCCCEEEeCCCCcccCCHHHHHHHHhhc------------------------------CcEEEEEcCCcEEEECH
Confidence 023567999999999999999999998765 89999996589999999
Q ss_pred CceEEEecCCCcEEEEEEeCCCCceEecHhhhcceEEEEeCCCCEEEEeeCCC
Q 011749 426 KNFLIPVDSNGTFCFAFAPTSSSLSIIGNVQQQGTRVSFNLRNSLVGFTPNKC 478 (478)
Q Consensus 426 ~~yl~~~~~~~~~Cl~~~~~~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~C 478 (478)
++|+++.+ ...+|+++... .+.+|||++|||++|+|||++++|||||+++|
T Consensus 275 ~~y~~~~~-~~~c~~~~~~~-~~~~ILG~~flr~~y~vFD~~~~riGfa~~~C 325 (326)
T cd06096 275 SSYLYKKE-SFWCKGGEKSV-SNKPILGASFFKNKQIIFDLDNNRIGFVESNC 325 (326)
T ss_pred HHhccccC-CceEEEEEecC-CCceEEChHHhcCcEEEEECcCCEEeeEcCCC
Confidence 99998765 23455566654 46799999999999999999999999999999
No 6
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=1.8e-51 Score=416.48 Aligned_cols=288 Identities=25% Similarity=0.469 Sum_probs=234.3
Q ss_pred CCeeEEEEEEecCCCcEEEEEEeCCCCcceEeCCCCCCc--cCCCCCCCCCCCCCCccccCCCCcccCCCCCCCcCCCCc
Q 011749 146 GSGEYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADC--YQQADPIFEPTSSSSYSPLTCNTKQCQSLDESECRNNTC 223 (478)
Q Consensus 146 ~~g~Y~v~i~iGTP~q~~~lilDTGS~~~Wv~~~~C~~C--~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~C~~~~c 223 (478)
.+.+|+++|.||||+|++.|+|||||+++||+|..|..| .+..++.|||++|+||+... |
T Consensus 3 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~------------------~ 64 (325)
T cd05490 3 MDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKNG------------------T 64 (325)
T ss_pred cCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeCC------------------c
Confidence 368999999999999999999999999999999999732 22356899999999998733 8
Q ss_pred eeEEEcCCCcEE------EEEECCeeeeeeEEEEEEcCCCC-c--cCCCeEEecCCCCCCccc------c------cCCC
Q 011749 224 LYEVSYGDGSYT------TVTLGSASVDNIAIGCGHNNEGL-F--VGAAGLLGLGGGLLSFPS------Q------INAS 282 (478)
Q Consensus 224 ~y~~~Ygdgs~~------tltlg~~~v~~~~fGc~~~~~g~-~--~~~~GIlGLg~~~~S~~s------q------l~~~ 282 (478)
.|.+.|++|+.. +|+||+..++++.|||++...+. | ...+||||||++.+|... + +..+
T Consensus 65 ~~~i~Yg~G~~~G~~~~D~v~~g~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~~~ 144 (325)
T cd05490 65 EFAIQYGSGSLSGYLSQDTVSIGGLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVEQN 144 (325)
T ss_pred EEEEEECCcEEEEEEeeeEEEECCEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCCCCCC
Confidence 999999999876 89999999999999999887653 3 247999999998776532 2 3378
Q ss_pred eeEEEeeCCC-CCCceEEEeCCCCCC----CCeeeecccCCCCCeeEEEEEeEEEEcCeEeecCCcccccccCCCCcEEE
Q 011749 283 TFSYCLVDRD-SDSTSTLEFDSSLPP----NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIV 357 (478)
Q Consensus 283 ~FS~cL~~~~-~~~~g~L~fG~~d~~----~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~~~~~~~~~~~~ii 357 (478)
+||+||.+.. ....|.|+||++|+. ++.|+|+.. ..+|.|+|++|+||++.... .....+||
T Consensus 145 ~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~----~~~w~v~l~~i~vg~~~~~~---------~~~~~aii 211 (325)
T cd05490 145 VFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTR----KAYWQIHMDQVDVGSGLTLC---------KGGCEAIV 211 (325)
T ss_pred EEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCc----ceEEEEEeeEEEECCeeeec---------CCCCEEEE
Confidence 9999997432 223699999999875 789999975 57999999999999864322 12357999
Q ss_pred ccCcceeeecHHHHHHHHHHHHhhccCCCCCCCccccccccccCCCCccccceEEEEeCCCcEEEeCCCceEEEecC-CC
Q 011749 358 DSGTAVTRLQTETYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNFLIPVDS-NG 436 (478)
Q Consensus 358 DSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~l~f~f~gg~~~~l~~~~yl~~~~~-~~ 436 (478)
||||+++++|++++++|.+++.+. +...+.+.+ +|++.. .+|+|+|+| +|+.++|++++|+++... ..
T Consensus 212 DSGTt~~~~p~~~~~~l~~~~~~~----~~~~~~~~~-~C~~~~-----~~P~i~f~f-gg~~~~l~~~~y~~~~~~~~~ 280 (325)
T cd05490 212 DTGTSLITGPVEEVRALQKAIGAV----PLIQGEYMI-DCEKIP-----TLPVISFSL-GGKVYPLTGEDYILKVSQRGT 280 (325)
T ss_pred CCCCccccCCHHHHHHHHHHhCCc----cccCCCEEe-cccccc-----cCCCEEEEE-CCEEEEEChHHeEEeccCCCC
Confidence 999999999999999999988542 223344444 588643 689999999 899999999999998653 23
Q ss_pred cEEE-EEEeC-----CCCceEecHhhhcceEEEEeCCCCEEEEee
Q 011749 437 TFCF-AFAPT-----SSSLSIIGNVQQQGTRVSFNLRNSLVGFTP 475 (478)
Q Consensus 437 ~~Cl-~~~~~-----~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~ 475 (478)
..|+ +|+.. ....||||+.|||++|+|||++++|||||+
T Consensus 281 ~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 281 TICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred CEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 5798 67652 235799999999999999999999999996
No 7
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=1.2e-51 Score=416.47 Aligned_cols=283 Identities=25% Similarity=0.461 Sum_probs=237.5
Q ss_pred CeeEEEEEEecCCCcEEEEEEeCCCCcceEeCCCCCCccCCCCCCCCCCCCCCccccCCCCcccCCCCCCCcCCCCceeE
Q 011749 147 SGEYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTKQCQSLDESECRNNTCLYE 226 (478)
Q Consensus 147 ~g~Y~v~i~iGTP~q~~~lilDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~C~~~~c~y~ 226 (478)
+.+|+++|.||||+|++.|+|||||+++||+|..|..|.++.++.|||++|+|++... +.|.
T Consensus 8 ~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~~~~f~~~~Sst~~~~~------------------~~~~ 69 (317)
T cd05478 8 DMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSNHNRFNPRQSSTYQSTG------------------QPLS 69 (317)
T ss_pred CCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccccccCcCCCCCCcceeeCC------------------cEEE
Confidence 6899999999999999999999999999999999997666778999999999999865 7899
Q ss_pred EEcCCCcEE------EEEECCeeeeeeEEEEEEcCCCCcc---CCCeEEecCCCCCC------ccccc------CCCeeE
Q 011749 227 VSYGDGSYT------TVTLGSASVDNIAIGCGHNNEGLFV---GAAGLLGLGGGLLS------FPSQI------NASTFS 285 (478)
Q Consensus 227 ~~Ygdgs~~------tltlg~~~v~~~~fGc~~~~~g~~~---~~~GIlGLg~~~~S------~~sql------~~~~FS 285 (478)
+.|++|+.. +|++|+..++++.|||++...+.+. ..+||||||++.++ +..|| ..++||
T Consensus 70 ~~yg~gs~~G~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS 149 (317)
T cd05478 70 IQYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQDLFS 149 (317)
T ss_pred EEECCceEEEEEeeeEEEECCEEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCCCCCCEEE
Confidence 999999866 8999999999999999988776542 47999999987654 33333 368999
Q ss_pred EEeeCCCCCCceEEEeCCCCCC----CCeeeecccCCCCCeeEEEEEeEEEEcCeEeecCCcccccccCCCCcEEEccCc
Q 011749 286 YCLVDRDSDSTSTLEFDSSLPP----NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGT 361 (478)
Q Consensus 286 ~cL~~~~~~~~g~L~fG~~d~~----~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~~~~~~~~~~~~iiDSGT 361 (478)
+||.+. ....|.|+||++|+. ++.|+|+.. +.+|.|.+++|+||++.+... .+..+||||||
T Consensus 150 ~~L~~~-~~~~g~l~~Gg~d~~~~~g~l~~~p~~~----~~~w~v~l~~v~v~g~~~~~~---------~~~~~iiDTGt 215 (317)
T cd05478 150 VYLSSN-GQQGSVVTFGGIDPSYYTGSLNWVPVTA----ETYWQITVDSVTINGQVVACS---------GGCQAIVDTGT 215 (317)
T ss_pred EEeCCC-CCCCeEEEEcccCHHHccCceEEEECCC----CcEEEEEeeEEEECCEEEccC---------CCCEEEECCCc
Confidence 999753 334699999999865 789999975 579999999999999987542 23579999999
Q ss_pred ceeeecHHHHHHHHHHHHhhccCCCCCCCccccccccccCCCCccccceEEEEeCCCcEEEeCCCceEEEecCCCcEEE-
Q 011749 362 AVTRLQTETYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNFLIPVDSNGTFCF- 440 (478)
Q Consensus 362 t~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~l~f~f~gg~~~~l~~~~yl~~~~~~~~~Cl- 440 (478)
++++||+++|++|.+++.+... ..+.+.+ +|+... .+|.|+|+| +|+.++||+++|+++. +..|+
T Consensus 216 s~~~lp~~~~~~l~~~~~~~~~----~~~~~~~-~C~~~~-----~~P~~~f~f-~g~~~~i~~~~y~~~~---~~~C~~ 281 (317)
T cd05478 216 SLLVGPSSDIANIQSDIGASQN----QNGEMVV-NCSSIS-----SMPDVVFTI-NGVQYPLPPSAYILQD---QGSCTS 281 (317)
T ss_pred hhhhCCHHHHHHHHHHhCCccc----cCCcEEe-CCcCcc-----cCCcEEEEE-CCEEEEECHHHheecC---CCEEeE
Confidence 9999999999999999854321 1233333 587643 689999999 8999999999999864 45798
Q ss_pred EEEeCC-CCceEecHhhhcceEEEEeCCCCEEEEee
Q 011749 441 AFAPTS-SSLSIIGNVQQQGTRVSFNLRNSLVGFTP 475 (478)
Q Consensus 441 ~~~~~~-~~~~IlG~~fl~~~yvvfD~~~~rIGFa~ 475 (478)
+|+..+ .+.||||+.|||++|+|||++++|||||+
T Consensus 282 ~~~~~~~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 282 GFQSMGLGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred EEEeCCCCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 677654 36799999999999999999999999996
No 8
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=7.1e-51 Score=428.59 Aligned_cols=296 Identities=22% Similarity=0.433 Sum_probs=240.9
Q ss_pred eeeccccCcCCCCeeEEEEEEecCCCcEEEEEEeCCCCcceEeCCCCCCccCCCCCCCCCCCCCCccccCCCCcccCCCC
Q 011749 135 IQGPIVSGSSQGSGEYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTKQCQSLD 214 (478)
Q Consensus 135 ~~~p~~~~~~~~~g~Y~v~i~iGTP~q~~~lilDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~ 214 (478)
...|+.+ ..+.+|+++|+||||||+|.|+|||||+++||+|..|..|.++.++.|||++|+||+.+.+..
T Consensus 109 ~~~~l~n---~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~~~~yd~s~SSTy~~~~~~~------- 178 (482)
T PTZ00165 109 LQQDLLN---FHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAPHRKFDPKKSSTYTKLKLGD------- 178 (482)
T ss_pred cceeccc---ccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcccccccCCCCccccCCcEecCCCC-------
Confidence 4456655 457999999999999999999999999999999999987555678999999999999853211
Q ss_pred CCCcCCCCceeEEEcCCCcEE------EEEECCeeeeeeEEEEEEcCCCC-cc--CCCeEEecCCCCCCcc---------
Q 011749 215 ESECRNNTCLYEVSYGDGSYT------TVTLGSASVDNIAIGCGHNNEGL-FV--GAAGLLGLGGGLLSFP--------- 276 (478)
Q Consensus 215 ~~~C~~~~c~y~~~Ygdgs~~------tltlg~~~v~~~~fGc~~~~~g~-~~--~~~GIlGLg~~~~S~~--------- 276 (478)
....+.+.||+|+.. +|++|+..++++.|||++...+. |. ..|||||||++.++..
T Consensus 179 ------~~~~~~i~YGsGs~~G~l~~DtV~ig~l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~ 252 (482)
T PTZ00165 179 ------ESAETYIQYGTGECVLALGKDTVKIGGLKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKKALPIV 252 (482)
T ss_pred ------ccceEEEEeCCCcEEEEEEEEEEEECCEEEccEEEEEEEeccccccccccccceeecCCCcccccccCCCCCHH
Confidence 012577999999877 99999999999999999987553 43 4799999999876332
Q ss_pred cc------cCCCeeEEEeeCCCCCCceEEEeCCCCCC------CCeeeecccCCCCCeeEEEEEeEEEEcCeEeecCCcc
Q 011749 277 SQ------INASTFSYCLVDRDSDSTSTLEFDSSLPP------NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETA 344 (478)
Q Consensus 277 sq------l~~~~FS~cL~~~~~~~~g~L~fG~~d~~------~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~ 344 (478)
.+ +..++||+||.+ +....|.|+||++|+. ++.|+|+.. ..||.|.+++|+||++.+....
T Consensus 253 ~~l~~qgli~~~~FS~yL~~-~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~----~~yW~i~l~~i~vgg~~~~~~~-- 325 (482)
T PTZ00165 253 DNIKKQNLLKRNIFSFYMSK-DLNQPGSISFGSADPKYTLEGHKIWWFPVIS----TDYWEIEVVDILIDGKSLGFCD-- 325 (482)
T ss_pred HHHHHcCCcccceEEEEecc-CCCCCCEEEeCCcCHHHcCCCCceEEEEccc----cceEEEEeCeEEECCEEeeecC--
Confidence 12 347899999964 3344699999999863 589999976 5799999999999998876531
Q ss_pred cccccCCCCcEEEccCcceeeecHHHHHHHHHHHHhhccCCCCCCCccccccccccCCCCccccceEEEEeCCCc-----
Q 011749 345 FKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGK----- 419 (478)
Q Consensus 345 ~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~l~f~f~gg~----- 419 (478)
.+..+|+||||+++++|+++|++|.+++... ..|++.. .+|+|+|+| +|.
T Consensus 326 ------~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~-------------~~C~~~~-----~lP~itf~f-~g~~g~~v 380 (482)
T PTZ00165 326 ------RKCKAAIDTGSSLITGPSSVINPLLEKIPLE-------------EDCSNKD-----SLPRISFVL-EDVNGRKI 380 (482)
T ss_pred ------CceEEEEcCCCccEeCCHHHHHHHHHHcCCc-------------ccccccc-----cCCceEEEE-CCCCCceE
Confidence 2357999999999999999999999887431 1588654 689999999 543
Q ss_pred EEEeCCCceEEEe---cCCCcEEE-EEEeCC-----CCceEecHhhhcceEEEEeCCCCEEEEeeCCC
Q 011749 420 VLPLPAKNFLIPV---DSNGTFCF-AFAPTS-----SSLSIIGNVQQQGTRVSFNLRNSLVGFTPNKC 478 (478)
Q Consensus 420 ~~~l~~~~yl~~~---~~~~~~Cl-~~~~~~-----~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~C 478 (478)
.+.|++++|+++. ...+..|+ +|.+.+ ++.||||++|||++|+|||++|+|||||+++|
T Consensus 381 ~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~ 448 (482)
T PTZ00165 381 KFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKH 448 (482)
T ss_pred EEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeecc
Confidence 8999999999974 22456896 887642 35799999999999999999999999999987
No 9
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=4.5e-51 Score=412.37 Aligned_cols=286 Identities=25% Similarity=0.482 Sum_probs=235.9
Q ss_pred CeeEEEEEEecCCCcEEEEEEeCCCCcceEeCCCCCCccCCCCCCCCCCCCCCccccCCCCcccCCCCCCCcCCCCceeE
Q 011749 147 SGEYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTKQCQSLDESECRNNTCLYE 226 (478)
Q Consensus 147 ~g~Y~v~i~iGTP~q~~~lilDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~C~~~~c~y~ 226 (478)
+..|+++|.||||||++.|+|||||+++||+|..|..|.+..++.|||++|+||+... |.|.
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~~~~f~~~~SsT~~~~~------------------~~~~ 62 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTNHTKFNPSQSSTYSTNG------------------ETFS 62 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccccccCCCCcccCCCceECC------------------cEEE
Confidence 3689999999999999999999999999999999985444567899999999998754 8999
Q ss_pred EEcCCCcEE------EEEECCeeeeeeEEEEEEcCCCC-c--cCCCeEEecCCCCC------Cccccc------CCCeeE
Q 011749 227 VSYGDGSYT------TVTLGSASVDNIAIGCGHNNEGL-F--VGAAGLLGLGGGLL------SFPSQI------NASTFS 285 (478)
Q Consensus 227 ~~Ygdgs~~------tltlg~~~v~~~~fGc~~~~~g~-~--~~~~GIlGLg~~~~------S~~sql------~~~~FS 285 (478)
+.|+||+.. ++++|+..++++.|||++...+. + ...+||||||++.. +++.|| ..++||
T Consensus 63 ~~Yg~Gs~~G~~~~D~i~~g~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS 142 (318)
T cd05477 63 LQYGSGSLTGIFGYDTVTVQGIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPIFS 142 (318)
T ss_pred EEECCcEEEEEEEeeEEEECCEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCCCEEE
Confidence 999999866 89999999999999999987653 2 34799999998654 334443 378999
Q ss_pred EEeeCCCCCCceEEEeCCCCCC----CCeeeecccCCCCCeeEEEEEeEEEEcCeEeecCCcccccccCCCCcEEEccCc
Q 011749 286 YCLVDRDSDSTSTLEFDSSLPP----NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGT 361 (478)
Q Consensus 286 ~cL~~~~~~~~g~L~fG~~d~~----~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~~~~~~~~~~~~iiDSGT 361 (478)
+||.+......|.|+||++|+. ++.|+|+.. ..+|.|+|++|+||++++.+.. .+..+||||||
T Consensus 143 ~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~----~~~w~v~l~~i~v~g~~~~~~~--------~~~~~iiDSGt 210 (318)
T cd05477 143 FYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTS----ETYWQIGIQGFQINGQATGWCS--------QGCQAIVDTGT 210 (318)
T ss_pred EEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCC----ceEEEEEeeEEEECCEEecccC--------CCceeeECCCC
Confidence 9997643345699999999866 699999975 5799999999999998875421 23568999999
Q ss_pred ceeeecHHHHHHHHHHHHhhccCCCCCCCccccccccccCCCCccccceEEEEeCCCcEEEeCCCceEEEecCCCcEEE-
Q 011749 362 AVTRLQTETYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNFLIPVDSNGTFCF- 440 (478)
Q Consensus 362 t~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~l~f~f~gg~~~~l~~~~yl~~~~~~~~~Cl- 440 (478)
++++||+++|++|++++.+... ..+.+.+ +|+... .+|+|+|+| +|+++.|++++|+++. ...|+
T Consensus 211 t~~~lP~~~~~~l~~~~~~~~~----~~~~~~~-~C~~~~-----~~p~l~~~f-~g~~~~v~~~~y~~~~---~~~C~~ 276 (318)
T cd05477 211 SLLTAPQQVMSTLMQSIGAQQD----QYGQYVV-NCNNIQ-----NLPTLTFTI-NGVSFPLPPSAYILQN---NGYCTV 276 (318)
T ss_pred ccEECCHHHHHHHHHHhCCccc----cCCCEEE-eCCccc-----cCCcEEEEE-CCEEEEECHHHeEecC---CCeEEE
Confidence 9999999999999999965432 1233333 587643 689999999 8899999999999864 35696
Q ss_pred EEEeC------CCCceEecHhhhcceEEEEeCCCCEEEEeeC
Q 011749 441 AFAPT------SSSLSIIGNVQQQGTRVSFNLRNSLVGFTPN 476 (478)
Q Consensus 441 ~~~~~------~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~ 476 (478)
+|.+. +...+|||+.|||++|++||++++|||||++
T Consensus 277 ~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 277 GIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred EEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 88653 1246999999999999999999999999985
No 10
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=6.8e-51 Score=410.77 Aligned_cols=283 Identities=27% Similarity=0.440 Sum_probs=232.1
Q ss_pred EEEEEEecCCCcEEEEEEeCCCCcceEeCCCCCCccCCCCCCCCCCCCCCccccCCCCcccCCCCCCCcCCCCceeEEEc
Q 011749 150 YFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTKQCQSLDESECRNNTCLYEVSY 229 (478)
Q Consensus 150 Y~v~i~iGTP~q~~~lilDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~C~~~~c~y~~~Y 229 (478)
|+++|.||||+|++.|+|||||+++||+|..|..+.++.++.|||++|+||+... |.|.+.|
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~~~~y~~~~SsT~~~~~------------------~~~~i~Y 62 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTKHNRFQPSESSTYVSNG------------------EAFSIQY 62 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCccceECCCCCcccccCC------------------cEEEEEe
Confidence 8999999999999999999999999999999984333467899999999998865 8999999
Q ss_pred CCCcEE------EEEECCeeeeeeEEEEEEcCCCC-c--cCCCeEEecCCCCCCc------c----cc--cCCCeeEEEe
Q 011749 230 GDGSYT------TVTLGSASVDNIAIGCGHNNEGL-F--VGAAGLLGLGGGLLSF------P----SQ--INASTFSYCL 288 (478)
Q Consensus 230 gdgs~~------tltlg~~~v~~~~fGc~~~~~g~-~--~~~~GIlGLg~~~~S~------~----sq--l~~~~FS~cL 288 (478)
++|+.. +|++++..++++.|||+....+. | ...+||||||++.++. . +| +..++||+||
T Consensus 63 g~g~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L 142 (316)
T cd05486 63 GTGSLTGIIGIDQVTVEGITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSVYM 142 (316)
T ss_pred CCcEEEEEeeecEEEECCEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEEEEEE
Confidence 999876 89999999999999999877653 3 2479999999987764 1 22 3468999999
Q ss_pred eCCC-CCCceEEEeCCCCCC----CCeeeecccCCCCCeeEEEEEeEEEEcCeEeecCCcccccccCCCCcEEEccCcce
Q 011749 289 VDRD-SDSTSTLEFDSSLPP----NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAV 363 (478)
Q Consensus 289 ~~~~-~~~~g~L~fG~~d~~----~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~~~~~~~~~~~~iiDSGTt~ 363 (478)
.+.. ....|.|+||++|+. ++.|+|+.. ..+|.|++++|+||++.+..+ ....+||||||++
T Consensus 143 ~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~----~~~w~v~l~~i~v~g~~~~~~---------~~~~aiiDTGTs~ 209 (316)
T cd05486 143 SRNPNSADGGELVFGGFDTSRFSGQLNWVPVTV----QGYWQIQLDNIQVGGTVIFCS---------DGCQAIVDTGTSL 209 (316)
T ss_pred ccCCCCCCCcEEEEcccCHHHcccceEEEECCC----ceEEEEEeeEEEEecceEecC---------CCCEEEECCCcch
Confidence 7532 224699999999976 799999976 579999999999999876532 2357899999999
Q ss_pred eeecHHHHHHHHHHHHhhccCCCCCCCccccccccccCCCCccccceEEEEeCCCcEEEeCCCceEEEecC-CCcEEE-E
Q 011749 364 TRLQTETYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNFLIPVDS-NGTFCF-A 441 (478)
Q Consensus 364 t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~l~f~f~gg~~~~l~~~~yl~~~~~-~~~~Cl-~ 441 (478)
++||++++++|.+++.+. ...+.+.+ +|.... .+|+|+|+| +|+.++|++++|++.... .+..|+ +
T Consensus 210 ~~lP~~~~~~l~~~~~~~-----~~~~~~~~-~C~~~~-----~~p~i~f~f-~g~~~~l~~~~y~~~~~~~~~~~C~~~ 277 (316)
T cd05486 210 ITGPSGDIKQLQNYIGAT-----ATDGEYGV-DCSTLS-----LMPSVTFTI-NGIPYSLSPQAYTLEDQSDGGGYCSSG 277 (316)
T ss_pred hhcCHHHHHHHHHHhCCc-----ccCCcEEE-eccccc-----cCCCEEEEE-CCEEEEeCHHHeEEecccCCCCEEeeE
Confidence 999999999998887532 12233333 587643 689999999 899999999999987532 346897 6
Q ss_pred EEeCC-----CCceEecHhhhcceEEEEeCCCCEEEEee
Q 011749 442 FAPTS-----SSLSIIGNVQQQGTRVSFNLRNSLVGFTP 475 (478)
Q Consensus 442 ~~~~~-----~~~~IlG~~fl~~~yvvfD~~~~rIGFa~ 475 (478)
|+..+ ++.||||+.|||++|+|||.+++|||||+
T Consensus 278 ~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 278 FQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred EEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 76532 35799999999999999999999999996
No 11
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=1.4e-49 Score=401.86 Aligned_cols=283 Identities=22% Similarity=0.448 Sum_probs=233.1
Q ss_pred CCeeEEEEEEecCCCcEEEEEEeCCCCcceEeCCCCCCccCCCCCCCCCCCCCCccccCCCCcccCCCCCCCcCCCCcee
Q 011749 146 GSGEYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTKQCQSLDESECRNNTCLY 225 (478)
Q Consensus 146 ~~g~Y~v~i~iGTP~q~~~lilDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~C~~~~c~y 225 (478)
.+.+|+++|.||||+|++.|+|||||+++||+|..|..+.+..++.|+|++|+|++... |.|
T Consensus 7 ~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~~~~y~~~~Sst~~~~~------------------~~~ 68 (320)
T cd05488 7 LNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFLHSKYDSSASSTYKANG------------------TEF 68 (320)
T ss_pred CCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCCcceECCCCCcceeeCC------------------CEE
Confidence 36889999999999999999999999999999999984333456799999999998754 899
Q ss_pred EEEcCCCcEE------EEEECCeeeeeeEEEEEEcCCCCc---cCCCeEEecCCCCCCcccc------------cCCCee
Q 011749 226 EVSYGDGSYT------TVTLGSASVDNIAIGCGHNNEGLF---VGAAGLLGLGGGLLSFPSQ------------INASTF 284 (478)
Q Consensus 226 ~~~Ygdgs~~------tltlg~~~v~~~~fGc~~~~~g~~---~~~~GIlGLg~~~~S~~sq------------l~~~~F 284 (478)
.+.|++|+.. ++++++..++++.|||++...+.. ...+||||||++..+...+ +..++|
T Consensus 69 ~~~y~~g~~~G~~~~D~v~ig~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~F 148 (320)
T cd05488 69 KIQYGSGSLEGFVSQDTLSIGDLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDEPVF 148 (320)
T ss_pred EEEECCceEEEEEEEeEEEECCEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhcCCCCCCEE
Confidence 9999999865 899999999999999998876642 3479999999988765432 347899
Q ss_pred EEEeeCCCCCCceEEEeCCCCCC----CCeeeecccCCCCCeeEEEEEeEEEEcCeEeecCCcccccccCCCCcEEEccC
Q 011749 285 SYCLVDRDSDSTSTLEFDSSLPP----NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSG 360 (478)
Q Consensus 285 S~cL~~~~~~~~g~L~fG~~d~~----~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~~~~~~~~~~~~iiDSG 360 (478)
|+||.+.. ...|.|+||++|+. ++.|+|++. ..+|.|++++|+||++.+... +..++||||
T Consensus 149 S~~L~~~~-~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~vg~~~~~~~----------~~~~ivDSG 213 (320)
T cd05488 149 SFYLGSSE-EDGGEATFGGIDESRFTGKITWLPVRR----KAYWEVELEKIGLGDEELELE----------NTGAAIDTG 213 (320)
T ss_pred EEEecCCC-CCCcEEEECCcCHHHcCCceEEEeCCc----CcEEEEEeCeEEECCEEeccC----------CCeEEEcCC
Confidence 99997542 34699999999875 799999975 468999999999999877532 246899999
Q ss_pred cceeeecHHHHHHHHHHHHhhccCCCCCCCccccccccccCCCCccccceEEEEeCCCcEEEeCCCceEEEecCCCcEEE
Q 011749 361 TAVTRLQTETYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNFLIPVDSNGTFCF 440 (478)
Q Consensus 361 Tt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~l~f~f~gg~~~~l~~~~yl~~~~~~~~~Cl 440 (478)
|++++||++++++|.+++.+.. ...+.+.+ +|.+.. .+|.|+|+| +|++++||+++|+++. +..|+
T Consensus 214 tt~~~lp~~~~~~l~~~~~~~~----~~~~~~~~-~C~~~~-----~~P~i~f~f-~g~~~~i~~~~y~~~~---~g~C~ 279 (320)
T cd05488 214 TSLIALPSDLAEMLNAEIGAKK----SWNGQYTV-DCSKVD-----SLPDLTFNF-DGYNFTLGPFDYTLEV---SGSCI 279 (320)
T ss_pred cccccCCHHHHHHHHHHhCCcc----ccCCcEEe-eccccc-----cCCCEEEEE-CCEEEEECHHHheecC---CCeEE
Confidence 9999999999999999885432 12233334 487643 689999999 8999999999999853 34698
Q ss_pred -EEEeCC-----CCceEecHhhhcceEEEEeCCCCEEEEee
Q 011749 441 -AFAPTS-----SSLSIIGNVQQQGTRVSFNLRNSLVGFTP 475 (478)
Q Consensus 441 -~~~~~~-----~~~~IlG~~fl~~~yvvfD~~~~rIGFa~ 475 (478)
.+...+ ++.||||+.|||++|+|||++++|||||+
T Consensus 280 ~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 280 SAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred EEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 565431 24699999999999999999999999985
No 12
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=1.7e-49 Score=400.79 Aligned_cols=276 Identities=27% Similarity=0.511 Sum_probs=228.3
Q ss_pred CCCeeEEEEEEecCCCcEEEEEEeCCCCcceEeCCCCC---CccCCCCCCCCCCCCCCccccCCCCcccCCCCCCCcCCC
Q 011749 145 QGSGEYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCA---DCYQQADPIFEPTSSSSYSPLTCNTKQCQSLDESECRNN 221 (478)
Q Consensus 145 ~~~g~Y~v~i~iGTP~q~~~lilDTGS~~~Wv~~~~C~---~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~C~~~ 221 (478)
..+.+|+++|.||||+|++.|+|||||+++||+|..|. .|. .++.|||++|+||+...
T Consensus 6 ~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~--~~~~y~~~~SsT~~~~~----------------- 66 (317)
T cd06098 6 YLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACY--FHSKYKSSKSSTYKKNG----------------- 66 (317)
T ss_pred cCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCcccc--ccCcCCcccCCCcccCC-----------------
Confidence 34789999999999999999999999999999999996 675 56899999999998764
Q ss_pred CceeEEEcCCCcEE------EEEECCeeeeeeEEEEEEcCCCC-c--cCCCeEEecCCCCCCcc----------cc--cC
Q 011749 222 TCLYEVSYGDGSYT------TVTLGSASVDNIAIGCGHNNEGL-F--VGAAGLLGLGGGLLSFP----------SQ--IN 280 (478)
Q Consensus 222 ~c~y~~~Ygdgs~~------tltlg~~~v~~~~fGc~~~~~g~-~--~~~~GIlGLg~~~~S~~----------sq--l~ 280 (478)
+.+.+.|++|+.. +|++|+..++++.|||++...+. | ...+||||||++.++.. +| +.
T Consensus 67 -~~~~i~Yg~G~~~G~~~~D~v~ig~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~ 145 (317)
T cd06098 67 -TSASIQYGTGSISGFFSQDSVTVGDLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLVK 145 (317)
T ss_pred -CEEEEEcCCceEEEEEEeeEEEECCEEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHhcCCCC
Confidence 6889999999876 89999999999999999876542 3 24799999999876642 22 44
Q ss_pred CCeeEEEeeCCC-CCCceEEEeCCCCCC----CCeeeecccCCCCCeeEEEEEeEEEEcCeEeecCCcccccccCCCCcE
Q 011749 281 ASTFSYCLVDRD-SDSTSTLEFDSSLPP----NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGI 355 (478)
Q Consensus 281 ~~~FS~cL~~~~-~~~~g~L~fG~~d~~----~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~~~~~~~~~~~~ 355 (478)
.++||+||.+.. ....|.|+||++|+. ++.|+|+.. ..+|.|.+++|+||++.+.... ....+
T Consensus 146 ~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~----~~~w~v~l~~i~v~g~~~~~~~--------~~~~a 213 (317)
T cd06098 146 EPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTR----KGYWQFEMGDVLIGGKSTGFCA--------GGCAA 213 (317)
T ss_pred CCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCc----CcEEEEEeCeEEECCEEeeecC--------CCcEE
Confidence 789999997532 234699999999976 789999975 4799999999999998876432 23568
Q ss_pred EEccCcceeeecHHHHHHHHHHHHhhccCCCCCCCccccccccccCCCCccccceEEEEeCCCcEEEeCCCceEEEecC-
Q 011749 356 IVDSGTAVTRLQTETYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNFLIPVDS- 434 (478)
Q Consensus 356 iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~l~f~f~gg~~~~l~~~~yl~~~~~- 434 (478)
||||||++++||++++++|. +.+ +|++.. .+|+|+|+| +|+.++|++++|+++...
T Consensus 214 ivDTGTs~~~lP~~~~~~i~----------------~~~-~C~~~~-----~~P~i~f~f-~g~~~~l~~~~yi~~~~~~ 270 (317)
T cd06098 214 IADSGTSLLAGPTTIVTQIN----------------SAV-DCNSLS-----SMPNVSFTI-GGKTFELTPEQYILKVGEG 270 (317)
T ss_pred EEecCCcceeCCHHHHHhhh----------------ccC-Cccccc-----cCCcEEEEE-CCEEEEEChHHeEEeecCC
Confidence 99999999999998876653 123 498654 589999999 899999999999987643
Q ss_pred CCcEEE-EEEeCC-----CCceEecHhhhcceEEEEeCCCCEEEEee
Q 011749 435 NGTFCF-AFAPTS-----SSLSIIGNVQQQGTRVSFNLRNSLVGFTP 475 (478)
Q Consensus 435 ~~~~Cl-~~~~~~-----~~~~IlG~~fl~~~yvvfD~~~~rIGFa~ 475 (478)
....|+ +|...+ +..||||+.|||++|+|||++++|||||+
T Consensus 271 ~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 271 AAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred CCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 235797 676432 34799999999999999999999999995
No 13
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=1.7e-49 Score=402.25 Aligned_cols=287 Identities=23% Similarity=0.406 Sum_probs=234.1
Q ss_pred CCeeEEEEEEecCCCcEEEEEEeCCCCcceEeCCCCCCc--cCCCCCCCCCCCCCCccccCCCCcccCCCCCCCcCCCCc
Q 011749 146 GSGEYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADC--YQQADPIFEPTSSSSYSPLTCNTKQCQSLDESECRNNTC 223 (478)
Q Consensus 146 ~~g~Y~v~i~iGTP~q~~~lilDTGS~~~Wv~~~~C~~C--~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~C~~~~c 223 (478)
.+..|+++|.||||+|++.|+|||||+++||+|..|..| .+..++.|||++|+||+... |
T Consensus 5 ~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~------------------~ 66 (326)
T cd05487 5 LDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENG------------------T 66 (326)
T ss_pred CCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECC------------------E
Confidence 468999999999999999999999999999999888753 23467899999999999754 8
Q ss_pred eeEEEcCCCcEE------EEEECCeeeeeeEEEEEEcCCC-Cc--cCCCeEEecCCCCCC----------cccc--cCCC
Q 011749 224 LYEVSYGDGSYT------TVTLGSASVDNIAIGCGHNNEG-LF--VGAAGLLGLGGGLLS----------FPSQ--INAS 282 (478)
Q Consensus 224 ~y~~~Ygdgs~~------tltlg~~~v~~~~fGc~~~~~g-~~--~~~~GIlGLg~~~~S----------~~sq--l~~~ 282 (478)
.|.+.|++|+.. +|++++..+. +.|||+....+ .| ...+||||||++..+ +.+| +..+
T Consensus 67 ~~~~~Yg~g~~~G~~~~D~v~~g~~~~~-~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~ 145 (326)
T cd05487 67 EFTIHYASGTVKGFLSQDIVTVGGIPVT-QMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLKED 145 (326)
T ss_pred EEEEEeCCceEEEEEeeeEEEECCEEee-EEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCCCCCC
Confidence 999999999866 8999988875 78999987643 22 357999999997765 3344 5588
Q ss_pred eeEEEeeCCC-CCCceEEEeCCCCCC----CCeeeecccCCCCCeeEEEEEeEEEEcCeEeecCCcccccccCCCCcEEE
Q 011749 283 TFSYCLVDRD-SDSTSTLEFDSSLPP----NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIV 357 (478)
Q Consensus 283 ~FS~cL~~~~-~~~~g~L~fG~~d~~----~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~~~~~~~~~~~~ii 357 (478)
+||+||.+.. ....|.|+||++|+. ++.|+|+.. ..+|.|.+++|+||++.+.+. .+..+||
T Consensus 146 ~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~----~~~w~v~l~~i~vg~~~~~~~---------~~~~aii 212 (326)
T cd05487 146 VFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSK----TGFWQIQMKGVSVGSSTLLCE---------DGCTAVV 212 (326)
T ss_pred EEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCc----CceEEEEecEEEECCEEEecC---------CCCEEEE
Confidence 9999997543 234699999999986 689999865 578999999999999876542 2356899
Q ss_pred ccCcceeeecHHHHHHHHHHHHhhccCCCCCCCccccccccccCCCCccccceEEEEeCCCcEEEeCCCceEEEecC-CC
Q 011749 358 DSGTAVTRLQTETYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNFLIPVDS-NG 436 (478)
Q Consensus 358 DSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~l~f~f~gg~~~~l~~~~yl~~~~~-~~ 436 (478)
||||++++||.++|++|++++.+... .+.+. .+|.... .+|+|+|+| +|+.++|++++|+++... .+
T Consensus 213 DSGts~~~lP~~~~~~l~~~~~~~~~-----~~~y~-~~C~~~~-----~~P~i~f~f-gg~~~~v~~~~yi~~~~~~~~ 280 (326)
T cd05487 213 DTGASFISGPTSSISKLMEALGAKER-----LGDYV-VKCNEVP-----TLPDISFHL-GGKEYTLSSSDYVLQDSDFSD 280 (326)
T ss_pred CCCccchhCcHHHHHHHHHHhCCccc-----CCCEE-EeccccC-----CCCCEEEEE-CCEEEEeCHHHhEEeccCCCC
Confidence 99999999999999999999864321 23333 3587643 589999999 899999999999987643 24
Q ss_pred cEEE-EEEeCC-----CCceEecHhhhcceEEEEeCCCCEEEEeeC
Q 011749 437 TFCF-AFAPTS-----SSLSIIGNVQQQGTRVSFNLRNSLVGFTPN 476 (478)
Q Consensus 437 ~~Cl-~~~~~~-----~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~ 476 (478)
..|+ +|...+ ++.||||+.|||++|+|||++++|||||++
T Consensus 281 ~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 281 KLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred CEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 6797 787532 347999999999999999999999999985
No 14
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=3.1e-49 Score=400.78 Aligned_cols=286 Identities=28% Similarity=0.511 Sum_probs=234.2
Q ss_pred CCCeeEEEEEEecCCCcEEEEEEeCCCCcceEeCCCCC----CccCCCCCCCCCCCCCCccccCCCCcccCCCCCCCcCC
Q 011749 145 QGSGEYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCA----DCYQQADPIFEPTSSSSYSPLTCNTKQCQSLDESECRN 220 (478)
Q Consensus 145 ~~~g~Y~v~i~iGTP~q~~~lilDTGS~~~Wv~~~~C~----~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~C~~ 220 (478)
..+.+|+++|.||||+|++.|+|||||+++||+|..|. .|. .++.|||++|+|++...
T Consensus 7 ~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~--~~~~y~~~~Sst~~~~~---------------- 68 (329)
T cd05485 7 YMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACL--LHNKYDSTKSSTYKKNG---------------- 68 (329)
T ss_pred ccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCcccc--CCCeECCcCCCCeEECC----------------
Confidence 45799999999999999999999999999999999997 353 46789999999998765
Q ss_pred CCceeEEEcCCCcEE------EEEECCeeeeeeEEEEEEcCCCC-c--cCCCeEEecCCCCCCcc----------cc--c
Q 011749 221 NTCLYEVSYGDGSYT------TVTLGSASVDNIAIGCGHNNEGL-F--VGAAGLLGLGGGLLSFP----------SQ--I 279 (478)
Q Consensus 221 ~~c~y~~~Ygdgs~~------tltlg~~~v~~~~fGc~~~~~g~-~--~~~~GIlGLg~~~~S~~----------sq--l 279 (478)
|.|.+.|++|+.. ++++++..++++.|||++...+. | ...+||||||++.+|.. +| +
T Consensus 69 --~~~~i~Y~~g~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i 146 (329)
T cd05485 69 --TEFAIQYGSGSLSGFLSTDTVSVGGVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKLV 146 (329)
T ss_pred --eEEEEEECCceEEEEEecCcEEECCEEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHhCCCC
Confidence 8999999999866 89999999999999999877653 3 24799999999877642 22 3
Q ss_pred CCCeeEEEeeCCCC-CCceEEEeCCCCCC----CCeeeecccCCCCCeeEEEEEeEEEEcCeEeecCCcccccccCCCCc
Q 011749 280 NASTFSYCLVDRDS-DSTSTLEFDSSLPP----NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGG 354 (478)
Q Consensus 280 ~~~~FS~cL~~~~~-~~~g~L~fG~~d~~----~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~~~~~~~~~~~ 354 (478)
..+.||+||.+..+ ...|.|+||+.|+. ++.|+|+.. ..+|.|.+++|+|+++.+. ..+..
T Consensus 147 ~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~~~~i~v~~~~~~----------~~~~~ 212 (329)
T cd05485 147 DAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTR----KGYWQFKMDSVSVGEGEFC----------SGGCQ 212 (329)
T ss_pred CCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCC----ceEEEEEeeEEEECCeeec----------CCCcE
Confidence 36899999975332 23699999999865 789999975 5799999999999998653 12356
Q ss_pred EEEccCcceeeecHHHHHHHHHHHHhhccCCCCCCCccccccccccCCCCccccceEEEEeCCCcEEEeCCCceEEEecC
Q 011749 355 IIVDSGTAVTRLQTETYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNFLIPVDS 434 (478)
Q Consensus 355 ~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~l~f~f~gg~~~~l~~~~yl~~~~~ 434 (478)
+||||||++++||+++|++|.+++.+. .. ..+.+.+ +|+... ++|+|+|+| ||+.+.|++++|+++...
T Consensus 213 ~iiDSGtt~~~lP~~~~~~l~~~~~~~--~~--~~~~~~~-~C~~~~-----~~p~i~f~f-gg~~~~i~~~~yi~~~~~ 281 (329)
T cd05485 213 AIADTGTSLIAGPVDEIEKLNNAIGAK--PI--IGGEYMV-NCSAIP-----SLPDITFVL-GGKSFSLTGKDYVLKVTQ 281 (329)
T ss_pred EEEccCCcceeCCHHHHHHHHHHhCCc--cc--cCCcEEE-eccccc-----cCCcEEEEE-CCEEeEEChHHeEEEecC
Confidence 899999999999999999999988542 11 1233333 587543 589999999 899999999999998654
Q ss_pred C-CcEEE-EEEeC-----CCCceEecHhhhcceEEEEeCCCCEEEEee
Q 011749 435 N-GTFCF-AFAPT-----SSSLSIIGNVQQQGTRVSFNLRNSLVGFTP 475 (478)
Q Consensus 435 ~-~~~Cl-~~~~~-----~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~ 475 (478)
. ..+|+ +|+.. .++.+|||+.|||++|+|||++++|||||.
T Consensus 282 ~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 282 MGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred CCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 2 36798 67753 234799999999999999999999999984
No 15
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1.4e-48 Score=401.47 Aligned_cols=300 Identities=25% Similarity=0.381 Sum_probs=228.5
Q ss_pred eeEEEEEEecCCCcEEEEEEeCCCCcceEeCCCCCCccCCCCCCCCCCCCCCccccCCCCcccCCCCCCCcCCCCceeEE
Q 011749 148 GEYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTKQCQSLDESECRNNTCLYEV 227 (478)
Q Consensus 148 g~Y~v~i~iGTP~q~~~lilDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~C~~~~c~y~~ 227 (478)
.+|+++|.||||+|++.|+|||||+++||+|.+|.. .++.|||++|+||+... |.|.+
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~~----~~~~f~~~~SsT~~~~~------------------~~~~i 59 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHPF----IHTYFHRELSSTYRDLG------------------KGVTV 59 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCcc----ccccCCchhCcCcccCC------------------ceEEE
Confidence 479999999999999999999999999999988743 46789999999999876 89999
Q ss_pred EcCCCcEE------EEEECCeeee--eeEEEEEEcCCCCcc---CCCeEEecCCCCCC------------cccccC-CCe
Q 011749 228 SYGDGSYT------TVTLGSASVD--NIAIGCGHNNEGLFV---GAAGLLGLGGGLLS------------FPSQIN-AST 283 (478)
Q Consensus 228 ~Ygdgs~~------tltlg~~~v~--~~~fGc~~~~~g~~~---~~~GIlGLg~~~~S------------~~sql~-~~~ 283 (478)
.|++|+.. +|+|++.... .+.|++.+...+.+. ..+||||||++.++ +.+|.. .++
T Consensus 60 ~Yg~Gs~~G~~~~D~v~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~~~~ 139 (364)
T cd05473 60 PYTQGSWEGELGTDLVSIPKGPNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGIPDV 139 (364)
T ss_pred EECcceEEEEEEEEEEEECCCCccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCCccc
Confidence 99999877 8888753111 134567666655442 46999999998774 334433 468
Q ss_pred eEEEeeCC--------CCCCceEEEeCCCCCC----CCeeeecccCCCCCeeEEEEEeEEEEcCeEeecCCcccccccCC
Q 011749 284 FSYCLVDR--------DSDSTSTLEFDSSLPP----NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESG 351 (478)
Q Consensus 284 FS~cL~~~--------~~~~~g~L~fG~~d~~----~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~~~~~~~~ 351 (478)
||++|... .....|.|+||++|+. ++.|+|++. ..+|.|.|++|+||++.+.++...+.
T Consensus 140 FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~----~~~~~v~l~~i~vg~~~~~~~~~~~~----- 210 (364)
T cd05473 140 FSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIRE----EWYYEVIILKLEVGGQSLNLDCKEYN----- 210 (364)
T ss_pred eEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCc----ceeEEEEEEEEEECCEeccccccccc-----
Confidence 99987421 1123699999999875 799999976 47899999999999998876443321
Q ss_pred CCcEEEccCcceeeecHHHHHHHHHHHHhhccCCCCCCC--ccccccccccCCCCccccceEEEEeCCC-----cEEEeC
Q 011749 352 NGGIIVDSGTAVTRLQTETYNALRDAFVRGTRALSPTDG--VALFDTCYDFSSRSSVEVPTVSFHFPEG-----KVLPLP 424 (478)
Q Consensus 352 ~~~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~--~~~~~~C~~~~~~~~~~~P~l~f~f~gg-----~~~~l~ 424 (478)
...+||||||++++||+++|++|++++++++.......+ .....+|++........+|+|+|+|+|+ .+++|+
T Consensus 211 ~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l~l~ 290 (364)
T cd05473 211 YDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFRITIL 290 (364)
T ss_pred CccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEEEEEC
Confidence 236899999999999999999999999876432111111 1112369875432223589999999642 478999
Q ss_pred CCceEEEecC--CCcEEEEEEeC-CCCceEecHhhhcceEEEEeCCCCEEEEeeCCC
Q 011749 425 AKNFLIPVDS--NGTFCFAFAPT-SSSLSIIGNVQQQGTRVSFNLRNSLVGFTPNKC 478 (478)
Q Consensus 425 ~~~yl~~~~~--~~~~Cl~~~~~-~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~C 478 (478)
|++|+++... .+..|+++... ..+.+|||+.|||++|+|||++++|||||+++|
T Consensus 291 p~~Y~~~~~~~~~~~~C~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C 347 (364)
T cd05473 291 PQLYLRPVEDHGTQLDCYKFAISQSTNGTVIGAVIMEGFYVVFDRANKRVGFAVSTC 347 (364)
T ss_pred HHHhhhhhccCCCcceeeEEeeecCCCceEEeeeeEcceEEEEECCCCEEeeEeccc
Confidence 9999986432 24679865432 235699999999999999999999999999999
No 16
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=6.5e-48 Score=403.28 Aligned_cols=292 Identities=22% Similarity=0.351 Sum_probs=234.8
Q ss_pred eeeccccCcCCCCeeEEEEEEecCCCcEEEEEEeCCCCcceEeCCCCCCccCCCCCCCCCCCCCCccccCCCCcccCCCC
Q 011749 135 IQGPIVSGSSQGSGEYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTKQCQSLD 214 (478)
Q Consensus 135 ~~~p~~~~~~~~~g~Y~v~i~iGTP~q~~~lilDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~ 214 (478)
..+|+.. ..+.+|+++|.||||+|++.|+|||||+++||+|..|..|.++.++.|||++|+||+...
T Consensus 128 ~~v~L~n---~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~~~~yd~s~SsT~~~~~---------- 194 (453)
T PTZ00147 128 DNVELKD---LANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETKNLYDSSKSKTYEKDG---------- 194 (453)
T ss_pred Ceeeccc---cCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccCCCccCCccCcceEECC----------
Confidence 3456654 346899999999999999999999999999999999986666678899999999998865
Q ss_pred CCCcCCCCceeEEEcCCCcEE------EEEECCeeeeeeEEEEEEcCCCC---c--cCCCeEEecCCCCCCccc------
Q 011749 215 ESECRNNTCLYEVSYGDGSYT------TVTLGSASVDNIAIGCGHNNEGL---F--VGAAGLLGLGGGLLSFPS------ 277 (478)
Q Consensus 215 ~~~C~~~~c~y~~~Ygdgs~~------tltlg~~~v~~~~fGc~~~~~g~---~--~~~~GIlGLg~~~~S~~s------ 277 (478)
+.|.+.|++|+.. +|++|+..++ ..|+|+.+..+. + ...|||||||++.+|...
T Consensus 195 --------~~f~i~Yg~GsvsG~~~~DtVtiG~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~ 265 (453)
T PTZ00147 195 --------TKVEMNYVSGTVSGFFSKDLVTIGNLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVV 265 (453)
T ss_pred --------CEEEEEeCCCCEEEEEEEEEEEECCEEEE-EEEEEEEeccCcccccccccccceecccCCccccccCCCHHH
Confidence 7999999999866 9999999988 579998876542 1 247999999998776432
Q ss_pred c------cCCCeeEEEeeCCCCCCceEEEeCCCCCC----CCeeeecccCCCCCeeEEEEEeEEEEcCeEeecCCccccc
Q 011749 278 Q------INASTFSYCLVDRDSDSTSTLEFDSSLPP----NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKI 347 (478)
Q Consensus 278 q------l~~~~FS~cL~~~~~~~~g~L~fG~~d~~----~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~~~~ 347 (478)
+ +..++||+||++. ....|.|+||++|+. ++.|+|+.. ..+|.|.++ +.+|+...
T Consensus 266 ~L~~qg~I~~~vFS~~L~~~-~~~~G~L~fGGiD~~ky~G~l~y~pl~~----~~~W~V~l~-~~vg~~~~--------- 330 (453)
T PTZ00147 266 ELKNQNKIEQAVFTFYLPPE-DKHKGYLTIGGIEERFYEGPLTYEKLNH----DLYWQVDLD-VHFGNVSS--------- 330 (453)
T ss_pred HHHHcCCCCccEEEEEecCC-CCCCeEEEECCcChhhcCCceEEEEcCC----CceEEEEEE-EEECCEec---------
Confidence 2 4478999999753 234699999999976 899999964 579999998 57776421
Q ss_pred ccCCCCcEEEccCcceeeecHHHHHHHHHHHHhhccCCCCCCCccccccccccCCCCccccceEEEEeCCCcEEEeCCCc
Q 011749 348 DESGNGGIIVDSGTAVTRLQTETYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKN 427 (478)
Q Consensus 348 ~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~l~f~f~gg~~~~l~~~~ 427 (478)
....+||||||+++++|+++++++.+++.+.. .+. .+. +..+|+.. .+|+|+|+| +|+.++|+|++
T Consensus 331 ---~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~--~~~-~~~-y~~~C~~~------~lP~~~f~f-~g~~~~L~p~~ 396 (453)
T PTZ00147 331 ---EKANVIVDSGTSVITVPTEFLNKFVESLDVFK--VPF-LPL-YVTTCNNT------KLPTLEFRS-PNKVYTLEPEY 396 (453)
T ss_pred ---CceeEEECCCCchhcCCHHHHHHHHHHhCCee--cCC-CCe-EEEeCCCC------CCCeEEEEE-CCEEEEECHHH
Confidence 23578999999999999999999999985431 111 122 34469852 589999999 78999999999
Q ss_pred eEEEecC-CCcEEE-EEEeCC--CCceEecHhhhcceEEEEeCCCCEEEEeeCC
Q 011749 428 FLIPVDS-NGTFCF-AFAPTS--SSLSIIGNVQQQGTRVSFNLRNSLVGFTPNK 477 (478)
Q Consensus 428 yl~~~~~-~~~~Cl-~~~~~~--~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~ 477 (478)
|+.+... ....|+ +|++.+ .+.||||++|||++|+|||++++|||||+++
T Consensus 397 yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 397 YLQPIEDIGSALCMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred heeccccCCCcEEEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 9986442 235797 787653 3579999999999999999999999999875
No 17
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=6.5e-48 Score=379.63 Aligned_cols=248 Identities=48% Similarity=0.889 Sum_probs=214.3
Q ss_pred eEEEEEEecCCCcEEEEEEeCCCCcceEeCCCCCCccCCCCCCCCCCCCCCccccCCCCcccCCCCCCCcCCCCceeEEE
Q 011749 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTKQCQSLDESECRNNTCLYEVS 228 (478)
Q Consensus 149 ~Y~v~i~iGTP~q~~~lilDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~C~~~~c~y~~~ 228 (478)
+|+++|.||||+|++.|+|||||+++||+| |.|.+.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~--------------------------------------------~~~~~~ 36 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC--------------------------------------------CSYEYS 36 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC--------------------------------------------CceEeE
Confidence 699999999999999999999999999986 357888
Q ss_pred cCCCcEE-------EEEECCe--eeeeeEEEEEEcCCCC-ccCCCeEEecCCCCCCcccccCCC--eeEEEeeCCC-CCC
Q 011749 229 YGDGSYT-------TVTLGSA--SVDNIAIGCGHNNEGL-FVGAAGLLGLGGGLLSFPSQINAS--TFSYCLVDRD-SDS 295 (478)
Q Consensus 229 Ygdgs~~-------tltlg~~--~v~~~~fGc~~~~~g~-~~~~~GIlGLg~~~~S~~sql~~~--~FS~cL~~~~-~~~ 295 (478)
|+||+.. +|+|++. .++++.|||++...+. ...++||||||+..+|+++|+... +||+||.+.. ...
T Consensus 37 Y~dg~~~~G~~~~D~v~~g~~~~~~~~~~Fg~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~~Fs~~l~~~~~~~~ 116 (265)
T cd05476 37 YGDGSSTSGVLATETFTFGDSSVSVPNVAFGCGTDNEGGSFGGADGILGLGRGPLSLVSQLGSTGNKFSYCLVPHDDTGG 116 (265)
T ss_pred eCCCceeeeeEEEEEEEecCCCCccCCEEEEecccccCCccCCCCEEEECCCCcccHHHHhhcccCeeEEEccCCCCCCC
Confidence 9987654 8999988 8999999999988752 234899999999999999999854 9999997532 345
Q ss_pred ceEEEeCCCCCC---CCeeeecccCCCCCeeEEEEEeEEEEcCeEeecCCcccccccCCCCcEEEccCcceeeecHHHHH
Q 011749 296 TSTLEFDSSLPP---NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYN 372 (478)
Q Consensus 296 ~g~L~fG~~d~~---~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~ 372 (478)
.|+|+||++|+. ++.|+|++.++....+|.|+|++|+|+++.+.++.+.+.........+||||||++++||+++|
T Consensus 117 ~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~~~- 195 (265)
T cd05476 117 SSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDPAY- 195 (265)
T ss_pred CCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCcccc-
Confidence 699999999983 8999999986544678999999999999998876655544445567899999999999999988
Q ss_pred HHHHHHHhhccCCCCCCCccccccccccCCCCccccceEEEEeCCCcEEEeCCCceEEEecCCCcEEEEEEeC-CCCceE
Q 011749 373 ALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNFLIPVDSNGTFCFAFAPT-SSSLSI 451 (478)
Q Consensus 373 ~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~l~f~f~gg~~~~l~~~~yl~~~~~~~~~Cl~~~~~-~~~~~I 451 (478)
|+|+|+|.+|..+.+++++|+++.. .+..|+++... ..+.+|
T Consensus 196 ------------------------------------P~i~~~f~~~~~~~i~~~~y~~~~~-~~~~C~~~~~~~~~~~~i 238 (265)
T cd05476 196 ------------------------------------PDLTLHFDGGADLELPPENYFVDVG-EGVVCLAILSSSSGGVSI 238 (265)
T ss_pred ------------------------------------CCEEEEECCCCEEEeCcccEEEECC-CCCEEEEEecCCCCCcEE
Confidence 8899999558999999999999654 56789998876 456899
Q ss_pred ecHhhhcceEEEEeCCCCEEEEeeCCC
Q 011749 452 IGNVQQQGTRVSFNLRNSLVGFTPNKC 478 (478)
Q Consensus 452 lG~~fl~~~yvvfD~~~~rIGFa~~~C 478 (478)
||+.|||++|++||++++|||||+++|
T Consensus 239 lG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 239 LGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred EChhhcccEEEEEECCCCEEeeecCCC
Confidence 999999999999999999999999999
No 18
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=5.4e-48 Score=381.81 Aligned_cols=243 Identities=32% Similarity=0.691 Sum_probs=203.0
Q ss_pred eeEEEEEEecCCCcEEEEEEeCCCCcceEeC-CCCCCccCCCCCCCCCCCCCCccccCCCCcccCCCCCCCcCCCCceeE
Q 011749 148 GEYFSRVGIGKPPSQVYMVLDTGSDVNWLQC-APCADCYQQADPIFEPTSSSSYSPLTCNTKQCQSLDESECRNNTCLYE 226 (478)
Q Consensus 148 g~Y~v~i~iGTP~q~~~lilDTGS~~~Wv~~-~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~C~~~~c~y~ 226 (478)
|+|+++|.||||+|++.|+|||||+++||+| .+|..| .|.|.
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c-------------------------------------~c~~~ 43 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC-------------------------------------QCDYE 43 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC-------------------------------------cCccE
Confidence 5799999999999999999999999999999 467666 17899
Q ss_pred EEcCCCcEE-------EEEEC----CeeeeeeEEEEEEcCCCCc----cCCCeEEecCCCCCCcccccC-----CCeeEE
Q 011749 227 VSYGDGSYT-------TVTLG----SASVDNIAIGCGHNNEGLF----VGAAGLLGLGGGLLSFPSQIN-----ASTFSY 286 (478)
Q Consensus 227 ~~Ygdgs~~-------tltlg----~~~v~~~~fGc~~~~~g~~----~~~~GIlGLg~~~~S~~sql~-----~~~FS~ 286 (478)
+.|+||+.. +|+++ +..++++.|||++.+.+.+ ...+||||||++++|+++||. .++||+
T Consensus 44 i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~Fs~ 123 (273)
T cd05475 44 IEYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNVIGH 123 (273)
T ss_pred eEeCCCCceEEEEEEEEEEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCceEEE
Confidence 999977555 77775 3577899999998876543 257999999999999999877 368999
Q ss_pred EeeCCCCCCceEEEeCCCCCC--CCeeeecccCCCCCeeEEEEEeEEEEcCeEeecCCcccccccCCCCcEEEccCccee
Q 011749 287 CLVDRDSDSTSTLEFDSSLPP--NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVT 364 (478)
Q Consensus 287 cL~~~~~~~~g~L~fG~~d~~--~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~~~~~~~~~~~~iiDSGTt~t 364 (478)
||++ ...|.|+||+.... ++.|+|+..++. ..+|.|++.+|+||++.+. ....++||||||+++
T Consensus 124 ~l~~---~~~g~l~~G~~~~~~g~i~ytpl~~~~~-~~~y~v~l~~i~vg~~~~~----------~~~~~~ivDTGTt~t 189 (273)
T cd05475 124 CLSS---NGGGFLFFGDDLVPSSGVTWTPMRRESQ-KKHYSPGPASLLFNGQPTG----------GKGLEVVFDSGSSYT 189 (273)
T ss_pred EccC---CCCeEEEECCCCCCCCCeeecccccCCC-CCeEEEeEeEEEECCEECc----------CCCceEEEECCCceE
Confidence 9964 33599999965433 799999987642 4699999999999998432 234679999999999
Q ss_pred eecHHHHHHHHHHHHhhccCCCCCCCccccccccccCCCCccccceEEEEeCCC---cEEEeCCCceEEEecCCCcEEEE
Q 011749 365 RLQTETYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEG---KVLPLPAKNFLIPVDSNGTFCFA 441 (478)
Q Consensus 365 ~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~l~f~f~gg---~~~~l~~~~yl~~~~~~~~~Cl~ 441 (478)
+||+++| +|+|+|+|.++ ++++|++++|+++.. ++..|++
T Consensus 190 ~lp~~~y------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~-~~~~Cl~ 232 (273)
T cd05475 190 YFNAQAY------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISE-KGNVCLG 232 (273)
T ss_pred EcCCccc------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcC-CCCEEEE
Confidence 9999877 58999999543 799999999998765 4678998
Q ss_pred EEeCC----CCceEecHhhhcceEEEEeCCCCEEEEeeCCC
Q 011749 442 FAPTS----SSLSIIGNVQQQGTRVSFNLRNSLVGFTPNKC 478 (478)
Q Consensus 442 ~~~~~----~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~C 478 (478)
+.... .+.||||+.|||++|++||++++|||||+++|
T Consensus 233 ~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 233 ILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred EecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 86532 24799999999999999999999999999999
No 19
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=1.5e-46 Score=392.31 Aligned_cols=291 Identities=21% Similarity=0.341 Sum_probs=230.7
Q ss_pred eeccccCcCCCCeeEEEEEEecCCCcEEEEEEeCCCCcceEeCCCCCCccCCCCCCCCCCCCCCccccCCCCcccCCCCC
Q 011749 136 QGPIVSGSSQGSGEYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTKQCQSLDE 215 (478)
Q Consensus 136 ~~p~~~~~~~~~g~Y~v~i~iGTP~q~~~lilDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~ 215 (478)
.+|+.. ..+.+|+++|.||||+|++.|+|||||+++||+|..|..+.++.++.|||++|+|++...
T Consensus 128 ~~~l~d---~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~~~~yd~s~SsT~~~~~----------- 193 (450)
T PTZ00013 128 VIELDD---VANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSIKNLYDSSKSKSYEKDG----------- 193 (450)
T ss_pred ceeeec---cCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCccccccCCCccCccCcccccCC-----------
Confidence 445543 235789999999999999999999999999999999985444567899999999998865
Q ss_pred CCcCCCCceeEEEcCCCcEE------EEEECCeeeeeeEEEEEEcCCCC---c--cCCCeEEecCCCCCCcc------cc
Q 011749 216 SECRNNTCLYEVSYGDGSYT------TVTLGSASVDNIAIGCGHNNEGL---F--VGAAGLLGLGGGLLSFP------SQ 278 (478)
Q Consensus 216 ~~C~~~~c~y~~~Ygdgs~~------tltlg~~~v~~~~fGc~~~~~g~---~--~~~~GIlGLg~~~~S~~------sq 278 (478)
|.|.+.||+|+.. +|++|+..++ ..||++.+..+. + ...+||||||++.++.. .+
T Consensus 194 -------~~~~i~YG~Gsv~G~~~~Dtv~iG~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~ 265 (450)
T PTZ00013 194 -------TKVDITYGSGTVKGFFSKDLVTLGHLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVE 265 (450)
T ss_pred -------cEEEEEECCceEEEEEEEEEEEECCEEEc-cEEEEEEeccccccceecccccceecccCCccccccCCCHHHH
Confidence 8999999999876 9999999887 578888765421 2 24799999999877642 22
Q ss_pred ------cCCCeeEEEeeCCCCCCceEEEeCCCCCC----CCeeeecccCCCCCeeEEEEEeEEEEcCeEeecCCcccccc
Q 011749 279 ------INASTFSYCLVDRDSDSTSTLEFDSSLPP----NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKID 348 (478)
Q Consensus 279 ------l~~~~FS~cL~~~~~~~~g~L~fG~~d~~----~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~~~~~ 348 (478)
+..++||+||++. ....|.|+|||+|++ ++.|+|+.. ..+|.|.++ +.+|....
T Consensus 266 L~~qg~I~~~vFS~~L~~~-~~~~G~L~fGGiD~~~y~G~L~y~pv~~----~~yW~I~l~-v~~G~~~~---------- 329 (450)
T PTZ00013 266 LKNQNKIDNALFTFYLPVH-DVHAGYLTIGGIEEKFYEGNITYEKLNH----DLYWQIDLD-VHFGKQTM---------- 329 (450)
T ss_pred HHhccCcCCcEEEEEecCC-CCCCCEEEECCcCccccccceEEEEcCc----CceEEEEEE-EEECceec----------
Confidence 3478999999753 234699999999976 799999964 579999998 66764432
Q ss_pred cCCCCcEEEccCcceeeecHHHHHHHHHHHHhhccCCCCCCCccccccccccCCCCccccceEEEEeCCCcEEEeCCCce
Q 011749 349 ESGNGGIIVDSGTAVTRLQTETYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNF 428 (478)
Q Consensus 349 ~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~l~f~f~gg~~~~l~~~~y 428 (478)
.+..+||||||+++++|+++++++.+++.... .+ ..+. +..+|+.. .+|+|+|+| +|..++|+|++|
T Consensus 330 --~~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~--~~-~~~~-y~~~C~~~------~lP~i~F~~-~g~~~~L~p~~Y 396 (450)
T PTZ00013 330 --QKANVIVDSGTTTITAPSEFLNKFFANLNVIK--VP-FLPF-YVTTCDNK------EMPTLEFKS-ANNTYTLEPEYY 396 (450)
T ss_pred --cccceEECCCCccccCCHHHHHHHHHHhCCee--cC-CCCe-EEeecCCC------CCCeEEEEE-CCEEEEECHHHh
Confidence 13568999999999999999999998885431 11 1222 33469752 589999999 789999999999
Q ss_pred EEEec-CCCcEEE-EEEeCC--CCceEecHhhhcceEEEEeCCCCEEEEeeCC
Q 011749 429 LIPVD-SNGTFCF-AFAPTS--SSLSIIGNVQQQGTRVSFNLRNSLVGFTPNK 477 (478)
Q Consensus 429 l~~~~-~~~~~Cl-~~~~~~--~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~ 477 (478)
+.+.. .++..|+ ++.+.+ .+.||||++|||++|+|||++++|||||+++
T Consensus 397 i~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 397 MNPLLDVDDTLCMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred eehhccCCCCeeEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 97642 2346797 777643 3579999999999999999999999999975
No 20
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=1.8e-45 Score=364.74 Aligned_cols=251 Identities=27% Similarity=0.420 Sum_probs=207.9
Q ss_pred EEEEEEecCCCcEEEEEEeCCCCcceEeCCCCCCccCCCCCCCCCCCCCCccccCCCCcccCCCCCCCcCCCCceeEEEc
Q 011749 150 YFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTKQCQSLDESECRNNTCLYEVSY 229 (478)
Q Consensus 150 Y~v~i~iGTP~q~~~lilDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~C~~~~c~y~~~Y 229 (478)
|+++|.||||+|++.|+|||||+++||+|+.|..|.++.++.|||++|+|++... .|.|.+.|
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~~~~y~~~~Sst~~~~~-----------------~~~~~i~Y 63 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGGHKLYDPSKSSTAKLLP-----------------GATWSISY 63 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhccCCcCCCccCccceecC-----------------CcEEEEEe
Confidence 8999999999999999999999999999999999988888899999999998754 38999999
Q ss_pred CCCcEE-------EEEECCeeeeeeEEEEEEcCCCC-c--cCCCeEEecCCCCCCccc-------------ccCCCeeEE
Q 011749 230 GDGSYT-------TVTLGSASVDNIAIGCGHNNEGL-F--VGAAGLLGLGGGLLSFPS-------------QINASTFSY 286 (478)
Q Consensus 230 gdgs~~-------tltlg~~~v~~~~fGc~~~~~g~-~--~~~~GIlGLg~~~~S~~s-------------ql~~~~FS~ 286 (478)
++|+.. +|+|++..++++.|||++...+. + ...+||||||+..++... |+..+.||+
T Consensus 64 ~~G~~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~~~~Fs~ 143 (278)
T cd06097 64 GDGSSASGIVYTDTVSIGGVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLDAPLFTA 143 (278)
T ss_pred CCCCeEEEEEEEEEEEECCEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhccCceEEE
Confidence 999743 89999999999999999987652 2 358999999998765432 222479999
Q ss_pred EeeCCCCCCceEEEeCCCCCC----CCeeeecccCCCCCeeEEEEEeEEEEcCeEeecCCcccccccCCCCcEEEccCcc
Q 011749 287 CLVDRDSDSTSTLEFDSSLPP----NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTA 362 (478)
Q Consensus 287 cL~~~~~~~~g~L~fG~~d~~----~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~~~~~~~~~~~~iiDSGTt 362 (478)
||.+ ...|.|+||++|+. ++.|+|++.+ ..+|.|++++|+||++.... ..+..+||||||+
T Consensus 144 ~l~~---~~~G~l~fGg~D~~~~~g~l~~~pi~~~---~~~w~v~l~~i~v~~~~~~~---------~~~~~~iiDSGTs 208 (278)
T cd06097 144 DLRK---AAPGFYTFGYIDESKYKGEISWTPVDNS---SGFWQFTSTSYTVGGDAPWS---------RSGFSAIADTGTT 208 (278)
T ss_pred EecC---CCCcEEEEeccChHHcCCceEEEEccCC---CcEEEEEEeeEEECCcceee---------cCCceEEeecCCc
Confidence 9964 34699999999975 7999999864 46899999999999874322 1245789999999
Q ss_pred eeeecHHHHHHHHHHHHhhccCCCCCCCccccccccccCCCCccccceEEEEeCCCcEEEeCCCceEEEecCCCcEEEEE
Q 011749 363 VTRLQTETYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNFLIPVDSNGTFCFAF 442 (478)
Q Consensus 363 ~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~l~f~f~gg~~~~l~~~~yl~~~~~~~~~Cl~~ 442 (478)
++++|++++++|.+++.+. .+....+.+.+ +|.. .+|+|+|+|
T Consensus 209 ~~~lP~~~~~~l~~~l~g~--~~~~~~~~~~~-~C~~-------~~P~i~f~~--------------------------- 251 (278)
T cd06097 209 LILLPDAIVEAYYSQVPGA--YYDSEYGGWVF-PCDT-------TLPDLSFAV--------------------------- 251 (278)
T ss_pred hhcCCHHHHHHHHHhCcCC--cccCCCCEEEE-ECCC-------CCCCEEEEE---------------------------
Confidence 9999999999999988422 12222333334 4764 289999999
Q ss_pred EeCCCCceEecHhhhcceEEEEeCCCCEEEEee
Q 011749 443 APTSSSLSIIGNVQQQGTRVSFNLRNSLVGFTP 475 (478)
Q Consensus 443 ~~~~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~ 475 (478)
.||||+.|||++|+|||++|+|||||+
T Consensus 252 ------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 ------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred ------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 599999999999999999999999996
No 21
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=6.6e-44 Score=355.86 Aligned_cols=260 Identities=25% Similarity=0.486 Sum_probs=213.8
Q ss_pred eEEEEEEecCCCcEEEEEEeCCCCcceEeCCCCCCccCCCCCCCCCCCCCCccccCCCCcccCCCCCCCcCCCCceeEEE
Q 011749 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTKQCQSLDESECRNNTCLYEVS 228 (478)
Q Consensus 149 ~Y~v~i~iGTP~q~~~lilDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~C~~~~c~y~~~ 228 (478)
.|+++|.||||+|++.|+|||||+++||+ .|.+.
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~----------------------------------------------~~~~~ 35 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP----------------------------------------------DFSIS 35 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee----------------------------------------------eeEEE
Confidence 59999999999999999999999999997 36778
Q ss_pred cCCCcEE-------EEEECCeeeeeeEEEEEEcCCCCccCCCeEEecCCCCC-----------CcccccC------CCee
Q 011749 229 YGDGSYT-------TVTLGSASVDNIAIGCGHNNEGLFVGAAGLLGLGGGLL-----------SFPSQIN------ASTF 284 (478)
Q Consensus 229 Ygdgs~~-------tltlg~~~v~~~~fGc~~~~~g~~~~~~GIlGLg~~~~-----------S~~sql~------~~~F 284 (478)
|++|+.. +|++++..++++.|||+++.. ..+||||||++.+ +++.||. .+.|
T Consensus 36 Y~~g~~~~G~~~~D~v~~g~~~~~~~~fg~~~~~~----~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~~~~F 111 (295)
T cd05474 36 YGDGTSASGTWGTDTVSIGGATVKNLQFAVANSTS----SDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKKNAY 111 (295)
T ss_pred eccCCcEEEEEEEEEEEECCeEecceEEEEEecCC----CCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcccceEE
Confidence 9986533 999999999999999999843 4699999999886 4555543 6789
Q ss_pred EEEeeCCCCCCceEEEeCCCCCC----CCeeeecccCCC--CCeeEEEEEeEEEEcCeEeecCCcccccccCCCCcEEEc
Q 011749 285 SYCLVDRDSDSTSTLEFDSSLPP----NAVTAPLLRNHE--LDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVD 358 (478)
Q Consensus 285 S~cL~~~~~~~~g~L~fG~~d~~----~~~~tpl~~~~~--~~~~y~v~l~gIsVgg~~l~i~~~~~~~~~~~~~~~iiD 358 (478)
|+||.+. +...|.|+||++|.. ++.|+|+..++. ...+|.|++++|+|+++++..+.. ...+.+|||
T Consensus 112 sl~l~~~-~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~------~~~~~~iiD 184 (295)
T cd05474 112 SLYLNDL-DASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLL------SKNLPALLD 184 (295)
T ss_pred EEEeCCC-CCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCccccc------CCCccEEEC
Confidence 9999753 234699999999865 689999987642 237899999999999988754211 345789999
Q ss_pred cCcceeeecHHHHHHHHHHHHhhccCCCCCCCccccccccccCCCCccccceEEEEeCCCcEEEeCCCceEEEecC---C
Q 011749 359 SGTAVTRLQTETYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNFLIPVDS---N 435 (478)
Q Consensus 359 SGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~l~f~f~gg~~~~l~~~~yl~~~~~---~ 435 (478)
|||++++||+++|++|.+++.+.... ..+.+ ..+|+... . |+|+|+| +|++++||+++|+++... .
T Consensus 185 SGt~~~~lP~~~~~~l~~~~~~~~~~---~~~~~-~~~C~~~~-----~-p~i~f~f-~g~~~~i~~~~~~~~~~~~~~~ 253 (295)
T cd05474 185 SGTTLTYLPSDIVDAIAKQLGATYDS---DEGLY-VVDCDAKD-----D-GSLTFNF-GGATISVPLSDLVLPASTDDGG 253 (295)
T ss_pred CCCccEeCCHHHHHHHHHHhCCEEcC---CCcEE-EEeCCCCC-----C-CEEEEEE-CCeEEEEEHHHhEeccccCCCC
Confidence 99999999999999999999765432 12333 34698743 3 9999999 789999999999988642 3
Q ss_pred CcEEE-EEEeCCCCceEecHhhhcceEEEEeCCCCEEEEeeC
Q 011749 436 GTFCF-AFAPTSSSLSIIGNVQQQGTRVSFNLRNSLVGFTPN 476 (478)
Q Consensus 436 ~~~Cl-~~~~~~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~ 476 (478)
+..|+ +|.+.+.+.+|||++|||++|++||.+++|||||++
T Consensus 254 ~~~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 254 DGACYLGIQPSTSDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred CCCeEEEEEeCCCCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 56785 888876578999999999999999999999999986
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=1e-43 Score=357.17 Aligned_cols=284 Identities=28% Similarity=0.558 Sum_probs=234.2
Q ss_pred eEEEEEEecCCCcEEEEEEeCCCCcceEeCCCCCCc-cCCCCCCCCCCCCCCccccCCCCcccCCCCCCCcCCCCceeEE
Q 011749 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADC-YQQADPIFEPTSSSSYSPLTCNTKQCQSLDESECRNNTCLYEV 227 (478)
Q Consensus 149 ~Y~v~i~iGTP~q~~~lilDTGS~~~Wv~~~~C~~C-~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~C~~~~c~y~~ 227 (478)
+|+++|.||||+|++.|++||||+.+||++..|..| .+.....|+|.+|+|++... +.+.+
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~------------------~~~~~ 62 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQG------------------KPFSI 62 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEE------------------EEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccce------------------eeeee
Confidence 699999999999999999999999999999999877 55677899999999998865 78999
Q ss_pred EcCCCcEE------EEEECCeeeeeeEEEEEEcCCCC---ccCCCeEEecCCCCC-------Ccccc------cCCCeeE
Q 011749 228 SYGDGSYT------TVTLGSASVDNIAIGCGHNNEGL---FVGAAGLLGLGGGLL-------SFPSQ------INASTFS 285 (478)
Q Consensus 228 ~Ygdgs~~------tltlg~~~v~~~~fGc~~~~~g~---~~~~~GIlGLg~~~~-------S~~sq------l~~~~FS 285 (478)
.|++|++. +++|++..++++.||++....+. ....+||||||+... +++.+ +..++||
T Consensus 63 ~y~~g~~~G~~~~D~v~ig~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~~~fs 142 (317)
T PF00026_consen 63 SYGDGSVSGNLVSDTVSIGGLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISSNVFS 142 (317)
T ss_dssp EETTEEEEEEEEEEEEEETTEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSSSEEE
T ss_pred eccCcccccccccceEeeeeccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhccccccccc
Confidence 99999966 89999999999999999996543 346899999997543 33333 4488999
Q ss_pred EEeeCCCCCCceEEEeCCCCCC----CCeeeecccCCCCCeeEEEEEeEEEEcCeEeecCCcccccccCCCCcEEEccCc
Q 011749 286 YCLVDRDSDSTSTLEFDSSLPP----NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGT 361 (478)
Q Consensus 286 ~cL~~~~~~~~g~L~fG~~d~~----~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~~~~~~~~~~~~iiDSGT 361 (478)
++|.+.. ...|.|+||++|+. +++|+|+.. ..+|.|.+++|+++++...... ...++|||||
T Consensus 143 l~l~~~~-~~~g~l~~Gg~d~~~~~g~~~~~~~~~----~~~w~v~~~~i~i~~~~~~~~~---------~~~~~~Dtgt 208 (317)
T PF00026_consen 143 LYLNPSD-SQNGSLTFGGYDPSKYDGDLVWVPLVS----SGYWSVPLDSISIGGESVFSSS---------GQQAILDTGT 208 (317)
T ss_dssp EEEESTT-SSEEEEEESSEEGGGEESEEEEEEBSS----TTTTEEEEEEEEETTEEEEEEE---------EEEEEEETTB
T ss_pred eeeeecc-cccchheeeccccccccCceeccCccc----cccccccccccccccccccccc---------ceeeeccccc
Confidence 9998655 55799999999876 689999984 5789999999999998332211 1358999999
Q ss_pred ceeeecHHHHHHHHHHHHhhccCCCCCCCccccccccccCCCCccccceEEEEeCCCcEEEeCCCceEEEecCC-CcEEE
Q 011749 362 AVTRLQTETYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNFLIPVDSN-GTFCF 440 (478)
Q Consensus 362 t~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~l~f~f~gg~~~~l~~~~yl~~~~~~-~~~Cl 440 (478)
++++||.+++++|++++...... +.+.+ +|.... .+|.|+|+| ++.+++|++++|+++.... ...|+
T Consensus 209 ~~i~lp~~~~~~i~~~l~~~~~~-----~~~~~-~c~~~~-----~~p~l~f~~-~~~~~~i~~~~~~~~~~~~~~~~C~ 276 (317)
T PF00026_consen 209 SYIYLPRSIFDAIIKALGGSYSD-----GVYSV-PCNSTD-----SLPDLTFTF-GGVTFTIPPSDYIFKIEDGNGGYCY 276 (317)
T ss_dssp SSEEEEHHHHHHHHHHHTTEEEC-----SEEEE-ETTGGG-----GSEEEEEEE-TTEEEEEEHHHHEEEESSTTSSEEE
T ss_pred ccccccchhhHHHHhhhcccccc-----eeEEE-eccccc-----ccceEEEee-CCEEEEecchHhcccccccccceeE
Confidence 99999999999999999765432 33333 476543 689999999 7999999999999987642 34796
Q ss_pred -EEEe----CCCCceEecHhhhcceEEEEeCCCCEEEEeeC
Q 011749 441 -AFAP----TSSSLSIIGNVQQQGTRVSFNLRNSLVGFTPN 476 (478)
Q Consensus 441 -~~~~----~~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~ 476 (478)
+|.. .....+|||.+|||++|++||.+++|||||++
T Consensus 277 ~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 277 LGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp ESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred eeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 7776 23467999999999999999999999999985
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=2.5e-42 Score=341.07 Aligned_cols=256 Identities=33% Similarity=0.630 Sum_probs=210.4
Q ss_pred EEEEEEecCCCcEEEEEEeCCCCcceEeCCCCCCccCCCCCC--CCCCCCCCccccCCCCcccCCCCCCCcCCCCceeEE
Q 011749 150 YFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPI--FEPTSSSSYSPLTCNTKQCQSLDESECRNNTCLYEV 227 (478)
Q Consensus 150 Y~v~i~iGTP~q~~~lilDTGS~~~Wv~~~~C~~C~~~~~~~--fdps~SsT~~~~~C~s~~C~~~~~~~C~~~~c~y~~ 227 (478)
|+++|.||||+|++.|+|||||+++||+|..|..|.++.... |++..|+++... .|.|.+
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~~~~~~~~~s~~~~~~------------------~~~~~~ 62 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHPRFKYDSSKSSTYKDT------------------GCTFSI 62 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCCCCccCccCCceeecC------------------CCEEEE
Confidence 789999999999999999999999999999999887665555 777777766553 489999
Q ss_pred EcCCCcEE------EEEECCeeeeeeEEEEEEcCCCC--ccCCCeEEecCCCC------CCcccccC------CCeeEEE
Q 011749 228 SYGDGSYT------TVTLGSASVDNIAIGCGHNNEGL--FVGAAGLLGLGGGL------LSFPSQIN------ASTFSYC 287 (478)
Q Consensus 228 ~Ygdgs~~------tltlg~~~v~~~~fGc~~~~~g~--~~~~~GIlGLg~~~------~S~~sql~------~~~FS~c 287 (478)
.|++|+.. +++|++..++++.|||++...+. ....+||||||+.. .+++.||. .++||+|
T Consensus 63 ~Y~~g~~~g~~~~D~v~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~Fs~~ 142 (283)
T cd05471 63 TYGDGSVTGGLGTDTVTIGGLTIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFSFY 142 (283)
T ss_pred EECCCeEEEEEEEeEEEECCEEEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHHCCCCCCCEEEEE
Confidence 99998877 89999999999999999998753 34589999999988 67777765 5899999
Q ss_pred eeCCC-CCCceEEEeCCCCCC----CCeeeecccCCCCCeeEEEEEeEEEEcCeEeecCCcccccccCCCCcEEEccCcc
Q 011749 288 LVDRD-SDSTSTLEFDSSLPP----NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTA 362 (478)
Q Consensus 288 L~~~~-~~~~g~L~fG~~d~~----~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~~~~~~~~~~~~iiDSGTt 362 (478)
|.+.. ....|.|+||++|+. ++.|+|++.. ...+|.|.+++|.|++..... ......+||||||+
T Consensus 143 l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~--~~~~~~v~l~~i~v~~~~~~~--------~~~~~~~iiDsGt~ 212 (283)
T cd05471 143 LGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSN--GPGYWQVPLDGISVGGKSVIS--------SSGGGGAIVDSGTS 212 (283)
T ss_pred EcCCCCCCCCCEEEEcccCccccCCceEEEecCCC--CCCEEEEEeCeEEECCceeee--------cCCCcEEEEecCCC
Confidence 97532 235699999999975 8999999886 257899999999999975111 12356799999999
Q ss_pred eeeecHHHHHHHHHHHHhhccCCCCCCCccccccccccCCCCccccceEEEEeCCCcEEEeCCCceEEEecCCCcEEEEE
Q 011749 363 VTRLQTETYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNFLIPVDSNGTFCFAF 442 (478)
Q Consensus 363 ~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~l~f~f~gg~~~~l~~~~yl~~~~~~~~~Cl~~ 442 (478)
+++||+++|++|.+++.+.... ...|+...+.....+|+|+|+|
T Consensus 213 ~~~lp~~~~~~l~~~~~~~~~~---------~~~~~~~~~~~~~~~p~i~f~f--------------------------- 256 (283)
T cd05471 213 LIYLPSSVYDAILKALGAAVSS---------SDGGYGVDCSPCDTLPDITFTF--------------------------- 256 (283)
T ss_pred CEeCCHHHHHHHHHHhCCcccc---------cCCcEEEeCcccCcCCCEEEEE---------------------------
Confidence 9999999999999999766432 1112222222233799999999
Q ss_pred EeCCCCceEecHhhhcceEEEEeCCCCEEEEee
Q 011749 443 APTSSSLSIIGNVQQQGTRVSFNLRNSLVGFTP 475 (478)
Q Consensus 443 ~~~~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~ 475 (478)
.+|||++|||++|++||.++++||||+
T Consensus 257 ------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 ------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred ------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 699999999999999999999999985
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.97 E-value=1.7e-30 Score=237.51 Aligned_cols=145 Identities=49% Similarity=0.967 Sum_probs=118.9
Q ss_pred EEEEEEecCCCcEEEEEEeCCCCcceEeCCCCCCccCCCCCCCCCCCCCCccccCCCCcccCCCCCC----CcCCCCcee
Q 011749 150 YFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTKQCQSLDES----ECRNNTCLY 225 (478)
Q Consensus 150 Y~v~i~iGTP~q~~~lilDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~----~C~~~~c~y 225 (478)
|+++|.||||+|++.|+|||||+++|++| ..+.|+|++|+||+.++|.+++|..++.. .|.++.|.|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C---------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~y 71 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC---------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCPY 71 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET-------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC---------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCcccc
Confidence 89999999999999999999999999999 46899999999999999999999988643 333567999
Q ss_pred EEEcCCCcEE-------EEEECC-----eeeeeeEEEEEEcCCCCccCCCeEEecCCCCCCccccc---CCCeeEEEeeC
Q 011749 226 EVSYGDGSYT-------TVTLGS-----ASVDNIAIGCGHNNEGLFVGAAGLLGLGGGLLSFPSQI---NASTFSYCLVD 290 (478)
Q Consensus 226 ~~~Ygdgs~~-------tltlg~-----~~v~~~~fGc~~~~~g~~~~~~GIlGLg~~~~S~~sql---~~~~FS~cL~~ 290 (478)
.+.|+|++.+ +|+++. ..++++.|||++.+.|.+..++||||||++++||++|| ..++|||||++
T Consensus 72 ~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~~~~~GilGLg~~~~Sl~sQl~~~~~~~FSyCL~~ 151 (164)
T PF14543_consen 72 SQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLFYGADGILGLGRGPLSLPSQLASSSGNKFSYCLPS 151 (164)
T ss_dssp EEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSSTTEEEEEE-SSSTTSHHHHHHHH--SEEEEEB-S
T ss_pred eeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCCcCCCcccccCCCcccHHHHHHHhcCCeEEEECCC
Confidence 9999998877 777763 57899999999999998889999999999999999999 79999999987
Q ss_pred CCCCCceEEEeCC
Q 011749 291 RDSDSTSTLEFDS 303 (478)
Q Consensus 291 ~~~~~~g~L~fG~ 303 (478)
.+....|.|+||+
T Consensus 152 ~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 152 SSPSSSGFLSFGD 164 (164)
T ss_dssp -SSSSEEEEEECS
T ss_pred CCCCCCEEEEeCc
Confidence 4456679999995
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.96 E-value=2.5e-29 Score=229.27 Aligned_cols=151 Identities=44% Similarity=0.815 Sum_probs=124.5
Q ss_pred eEEEEEeEEEEcCeEeecCCcccccccCCCCcEEEccCcceeeecHHHHHHHHHHHHhhccCCC--C-CCCccccccccc
Q 011749 323 FYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVRGTRALS--P-TDGVALFDTCYD 399 (478)
Q Consensus 323 ~y~v~l~gIsVgg~~l~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~--~-~~~~~~~~~C~~ 399 (478)
+|+|+|++|+||++++++++..|++ .++.+++||||||++|+||+++|++|+++|.+++.... + ......++.||+
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~-~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~ 79 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQL-SDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYN 79 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCE-TTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEE
T ss_pred CccEEEEEEEECCEEecCChHHhhc-cCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceee
Confidence 5999999999999999999999987 77889999999999999999999999999999886543 2 234456778999
Q ss_pred cCC----CCccccceEEEEeCCCcEEEeCCCceEEEecCCCcEEEEEEeC---CCCceEecHhhhcceEEEEeCCCCEEE
Q 011749 400 FSS----RSSVEVPTVSFHFPEGKVLPLPAKNFLIPVDSNGTFCFAFAPT---SSSLSIIGNVQQQGTRVSFNLRNSLVG 472 (478)
Q Consensus 400 ~~~----~~~~~~P~l~f~f~gg~~~~l~~~~yl~~~~~~~~~Cl~~~~~---~~~~~IlG~~fl~~~yvvfD~~~~rIG 472 (478)
.+. .....+|+|+|||+||++|+|++++|+++.+ ++.+|++|.++ ..+.+|||+.+||+++++||++++|||
T Consensus 80 ~~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~-~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~ig 158 (161)
T PF14541_consen 80 LSSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVS-PGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIG 158 (161)
T ss_dssp GGCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEEC-TTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEE
T ss_pred ccccccccccccCCeEEEEEeCCcceeeeccceeeecc-CCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEE
Confidence 887 3557899999999889999999999999987 67999999888 467899999999999999999999999
Q ss_pred Eee
Q 011749 473 FTP 475 (478)
Q Consensus 473 Fa~ 475 (478)
|+|
T Consensus 159 F~~ 161 (161)
T PF14541_consen 159 FAP 161 (161)
T ss_dssp EEE
T ss_pred EeC
Confidence 997
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.88 E-value=4.2e-22 Score=169.30 Aligned_cols=99 Identities=34% Similarity=0.693 Sum_probs=88.9
Q ss_pred EEEEecCCCcEEEEEEeCCCCcceEeCCCCCCccCCCCCCC-CCCCCCCccccCCCCcccCCCCCCCcCCCCceeEEEcC
Q 011749 152 SRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIF-EPTSSSSYSPLTCNTKQCQSLDESECRNNTCLYEVSYG 230 (478)
Q Consensus 152 v~i~iGTP~q~~~lilDTGS~~~Wv~~~~C~~C~~~~~~~f-dps~SsT~~~~~C~s~~C~~~~~~~C~~~~c~y~~~Yg 230 (478)
++|.||||+|++.|+|||||+++||+|..|..|..+.++.| +|+.|++++... |.|.+.|+
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~~~~~~~~~~sst~~~~~------------------~~~~~~Y~ 62 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYSHSSYDDPSASSTYSDNG------------------CTFSITYG 62 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCcccccccccCCcCCCCCCCCCC------------------cEEEEEeC
Confidence 47999999999999999999999999999998877777777 999999998765 89999999
Q ss_pred CCcEE------EEEECCeeeeeeEEEEEEcCCCCc---cCCCeEEec
Q 011749 231 DGSYT------TVTLGSASVDNIAIGCGHNNEGLF---VGAAGLLGL 268 (478)
Q Consensus 231 dgs~~------tltlg~~~v~~~~fGc~~~~~g~~---~~~~GIlGL 268 (478)
+|+.. +|+|++..++++.|||++...+.+ ...+|||||
T Consensus 63 ~g~~~g~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 63 TGSLSGGLSTDTVSIGDIEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred CCeEEEEEEEEEEEECCEEECCEEEEEEEecCCccccccccccccCC
Confidence 99866 899999999999999999987753 357999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.83 E-value=5.7e-05 Score=61.69 Aligned_cols=87 Identities=20% Similarity=0.251 Sum_probs=60.1
Q ss_pred eeEEEEEEecCCCcEEEEEEeCCCCcceEeCCCCCCccCCCCCCCCCCCCCCccccCCCCcccCCCCCCCcCCCCceeEE
Q 011749 148 GEYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTKQCQSLDESECRNNTCLYEV 227 (478)
Q Consensus 148 g~Y~v~i~iGTP~q~~~lilDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~C~~~~c~y~~ 227 (478)
+.|++++.|| .+++.+++|||++.+|+.-.-...+.. ...+ .....+
T Consensus 1 ~~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~l~~----~~~~---------------------------~~~~~~ 47 (96)
T cd05483 1 GHFVVPVTIN--GQPVRFLLDTGASTTVISEELAERLGL----PLTL---------------------------GGKVTV 47 (96)
T ss_pred CcEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcCC----CccC---------------------------CCcEEE
Confidence 3589999999 899999999999999997642222210 0000 123444
Q ss_pred EcCCCcEE-------EEEECCeeeeeeEEEEEEcCCCCccCCCeEEecCC
Q 011749 228 SYGDGSYT-------TVTLGSASVDNIAIGCGHNNEGLFVGAAGLLGLGG 270 (478)
Q Consensus 228 ~Ygdgs~~-------tltlg~~~v~~~~fGc~~~~~g~~~~~~GIlGLg~ 270 (478)
...+|... .+++|+..++++.+........ ..+||||+.+
T Consensus 48 ~~~~G~~~~~~~~~~~i~ig~~~~~~~~~~v~d~~~~---~~~gIlG~d~ 94 (96)
T cd05483 48 QTANGRVRAARVRLDSLQIGGITLRNVPAVVLPGDAL---GVDGLLGMDF 94 (96)
T ss_pred EecCCCccceEEEcceEEECCcEEeccEEEEeCCccc---CCceEeChHH
Confidence 45555433 8889999999888887766543 5799999863
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=95.78 E-value=0.064 Score=46.36 Aligned_cols=88 Identities=17% Similarity=0.249 Sum_probs=56.0
Q ss_pred CeeEEEEEEecCCCcEEEEEEeCCCCcceEeCCCCCCccCCCCCCCCCCCCCCccccCCCCcccCCCCCCCcCCCCceeE
Q 011749 147 SGEYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTKQCQSLDESECRNNTCLYE 226 (478)
Q Consensus 147 ~g~Y~v~i~iGTP~q~~~lilDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~C~~~~c~y~ 226 (478)
+|.|++++.|. .+++.+++|||++.+-+...--... ..++..- .....
T Consensus 9 ~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~~L------gl~~~~~------------------------~~~~~ 56 (121)
T TIGR02281 9 DGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQRL------GLDLNRL------------------------GYTVT 56 (121)
T ss_pred CCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHc------CCCcccC------------------------CceEE
Confidence 58999999998 7899999999999998754311111 0111100 01122
Q ss_pred EEcCCCcEE-------EEEECCeeeeeeEEEEEEcCCCCccCCCeEEecCC
Q 011749 227 VSYGDGSYT-------TVTLGSASVDNIAIGCGHNNEGLFVGAAGLLGLGG 270 (478)
Q Consensus 227 ~~Ygdgs~~-------tltlg~~~v~~~~fGc~~~~~g~~~~~~GIlGLg~ 270 (478)
+.=..|... .+.+|+..+.|+.+.+...... .+|+||+.+
T Consensus 57 ~~ta~G~~~~~~~~l~~l~iG~~~~~nv~~~v~~~~~~----~~~LLGm~f 103 (121)
T TIGR02281 57 VSTANGQIKAARVTLDRVAIGGIVVNDVDAMVAEGGAL----SESLLGMSF 103 (121)
T ss_pred EEeCCCcEEEEEEEeCEEEECCEEEeCcEEEEeCCCcC----CceEcCHHH
Confidence 222233322 7889999999999877654321 279999975
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=95.54 E-value=0.076 Score=42.39 Aligned_cols=82 Identities=22% Similarity=0.304 Sum_probs=49.0
Q ss_pred EEEEecCCCcEEEEEEeCCCCcceEeCCCCCCccCCCCCCCCCCCCCCccccCCCCcccCCCCCCCcCCCCceeEEEcCC
Q 011749 152 SRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTKQCQSLDESECRNNTCLYEVSYGD 231 (478)
Q Consensus 152 v~i~iGTP~q~~~lilDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~C~~~~c~y~~~Ygd 231 (478)
+++.|+ .+++.+++|||++.+.+.-.-+.... ..+.... ....+.-.+
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~~l~------~~~~~~~------------------------~~~~~~~~~ 48 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAKKLG------LKPRPKS------------------------VPISVSGAG 48 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHHHcC------CCCcCCc------------------------eeEEEEeCC
Confidence 467777 78999999999998887544322110 0110000 112222233
Q ss_pred CcEE-------EEEECCeeeeeeEEEEEEcCCCCccCCCeEEecC
Q 011749 232 GSYT-------TVTLGSASVDNIAIGCGHNNEGLFVGAAGLLGLG 269 (478)
Q Consensus 232 gs~~-------tltlg~~~v~~~~fGc~~~~~g~~~~~~GIlGLg 269 (478)
|... .+++|+..+.++.|-.... -...+||||+-
T Consensus 49 g~~~~~~~~~~~i~ig~~~~~~~~~~v~~~----~~~~~~iLG~d 89 (90)
T PF13650_consen 49 GSVTVYRGRVDSITIGGITLKNVPFLVVDL----GDPIDGILGMD 89 (90)
T ss_pred CCEEEEEEEEEEEEECCEEEEeEEEEEECC----CCCCEEEeCCc
Confidence 3322 7888998888888776661 22468999974
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.97 E-value=0.19 Score=43.48 Aligned_cols=94 Identities=14% Similarity=0.165 Sum_probs=52.5
Q ss_pred EEEccCcceeeecHHHHHHHHHHHHhhccCCC-CCCCccccccccccCCCCccccceEEEEeCCCcEEEeCCCceEEEec
Q 011749 355 IIVDSGTAVTRLQTETYNALRDAFVRGTRALS-PTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNFLIPVD 433 (478)
Q Consensus 355 ~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~-~~~~~~~~~~C~~~~~~~~~~~P~l~f~f~gg~~~~l~~~~yl~~~~ 433 (478)
++||||.+.+.++++..+++--..... ..+. ...+.... .|. .......+++ +|..+.+ ++
T Consensus 30 ~LvDTGAs~s~Is~~~a~~lgl~~~~~-~~~~~~~~g~g~~-~~~-------g~~~~~~l~i-~~~~~~~---~~----- 91 (124)
T cd05479 30 AFVDSGAQMTIMSKACAEKCGLMRLID-KRFQGIAKGVGTQ-KIL-------GRIHLAQVKI-GNLFLPC---SF----- 91 (124)
T ss_pred EEEeCCCceEEeCHHHHHHcCCccccC-cceEEEEecCCCc-EEE-------eEEEEEEEEE-CCEEeee---EE-----
Confidence 599999999999999988753211000 0000 00110000 010 0124455666 5544321 11
Q ss_pred CCCcEEEEEEeCCCCceEecHhhhcceEEEEeCCCCEEEE
Q 011749 434 SNGTFCFAFAPTSSSLSIIGNVQQQGTRVSFNLRNSLVGF 473 (478)
Q Consensus 434 ~~~~~Cl~~~~~~~~~~IlG~~fl~~~yvvfD~~~~rIGF 473 (478)
.+.+......|||..||+.+-.+.|+.+++|-|
T Consensus 92 -------~Vl~~~~~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 92 -------TVLEDDDVDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred -------EEECCCCcCEEecHHHHHhCCeEEECCCCEEEC
Confidence 112222345899999999999999999998854
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=92.41 E-value=0.79 Score=39.60 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=28.6
Q ss_pred CeeEEEEEEecCCCcEEEEEEeCCCCcceEeCCCCC
Q 011749 147 SGEYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCA 182 (478)
Q Consensus 147 ~g~Y~v~i~iGTP~q~~~lilDTGS~~~Wv~~~~C~ 182 (478)
...+++++.|+ ++++.+++|||++.+++.-.-+.
T Consensus 14 ~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~a~ 47 (124)
T cd05479 14 VPMLYINVEIN--GVPVKAFVDSGAQMTIMSKACAE 47 (124)
T ss_pred eeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHHHH
Confidence 36789999999 89999999999999998654333
No 32
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=91.25 E-value=0.22 Score=40.42 Aligned_cols=28 Identities=18% Similarity=0.166 Sum_probs=25.3
Q ss_pred EEEEEEecCCCcEEEEEEeCCCCcceEeCC
Q 011749 150 YFSRVGIGKPPSQVYMVLDTGSDVNWLQCA 179 (478)
Q Consensus 150 Y~v~i~iGTP~q~~~lilDTGS~~~Wv~~~ 179 (478)
|++++.|+ .+++.+++||||+.+++.-+
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~ 28 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEK 28 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHH
Confidence 57899999 89999999999999999754
No 33
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=89.45 E-value=1.6 Score=36.68 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=20.9
Q ss_pred CceEecHhhhcceEEEEeCCCCEE
Q 011749 448 SLSIIGNVQQQGTRVSFNLRNSLV 471 (478)
Q Consensus 448 ~~~IlG~~fl~~~yvvfD~~~~rI 471 (478)
+..+||..||+.+-++.|+.++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 368999999999999999988753
No 34
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=89.20 E-value=1.1 Score=39.55 Aligned_cols=98 Identities=14% Similarity=0.211 Sum_probs=54.8
Q ss_pred cEEEccCcceeeecHHHHHHHHHHHHhhccCCCC-CCCccccccccccCCCCccccceEEEEeCCCcEEEeCCCceEEEe
Q 011749 354 GIIVDSGTAVTRLQTETYNALRDAFVRGTRALSP-TDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNFLIPV 432 (478)
Q Consensus 354 ~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~-~~~~~~~~~C~~~~~~~~~~~P~l~f~f~gg~~~~l~~~~yl~~~ 432 (478)
.++||||.+-.++.......+.-.+...-....- .++.. . .|. ...+.+.+.+ +|..+.... +++
T Consensus 34 ~vLiDSGAThsFIs~~~a~~~~l~~~~l~~~~~V~~~g~~-~-~~~-------~~~~~~~~~i-~g~~~~~dl--~vl-- 99 (135)
T PF08284_consen 34 SVLIDSGATHSFISSSFAKKLGLPLEPLPRPIVVSAPGGS-I-NCE-------GVCPDVPLSI-QGHEFVVDL--LVL-- 99 (135)
T ss_pred EEEEecCCCcEEccHHHHHhcCCEEEEccCeeEEeccccc-c-ccc-------ceeeeEEEEE-CCeEEEeee--EEe--
Confidence 3699999999999888766543221110000000 01110 0 011 1234555555 443332111 111
Q ss_pred cCCCcEEEEEEeCCCCceEecHhhhcceEEEEeCCCCEEEEeeC
Q 011749 433 DSNGTFCFAFAPTSSSLSIIGNVQQQGTRVSFNLRNSLVGFTPN 476 (478)
Q Consensus 433 ~~~~~~Cl~~~~~~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~ 476 (478)
+..+-..|||..+|+.+...-|..+++|-|...
T Consensus 100 -----------~l~~~DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 100 -----------DLGGYDVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred -----------cccceeeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 112234899999999999999999999999753
No 35
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=87.25 E-value=6.9 Score=40.02 Aligned_cols=31 Identities=19% Similarity=0.153 Sum_probs=21.3
Q ss_pred eEEEEEEecCCC----cEE-EEEEeCCCCcceEeCC
Q 011749 149 EYFSRVGIGKPP----SQV-YMVLDTGSDVNWLQCA 179 (478)
Q Consensus 149 ~Y~v~i~iGTP~----q~~-~lilDTGS~~~Wv~~~ 179 (478)
.=++.|.|=-|. |.+ +|++||||.-+-|...
T Consensus 23 ~p~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~s 58 (370)
T PF11925_consen 23 IPTVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFAS 58 (370)
T ss_pred ceeeEEEEeCCCCCCceeeCcEEEeccchhhhHHHh
Confidence 346677774443 344 8999999998877654
No 36
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=86.61 E-value=1.1 Score=34.72 Aligned_cols=34 Identities=29% Similarity=0.443 Sum_probs=29.7
Q ss_pred CeeEEEEEEecCCCcEEEEEEeCCCCcceEeCCCCC
Q 011749 147 SGEYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCA 182 (478)
Q Consensus 147 ~g~Y~v~i~iGTP~q~~~lilDTGS~~~Wv~~~~C~ 182 (478)
.+.+++.+.|| ++.+.+++|||++...|...-+.
T Consensus 6 ~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a~ 39 (72)
T PF13975_consen 6 PGLMYVPVSIG--GVQVKALVDTGATHNFISESLAK 39 (72)
T ss_pred CCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHHH
Confidence 58899999999 79999999999999988765444
No 37
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=83.41 E-value=1.5 Score=35.94 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=23.9
Q ss_pred EEEEEecCCCcEEEEEEeCCCCcceEeCCC
Q 011749 151 FSRVGIGKPPSQVYMVLDTGSDVNWLQCAP 180 (478)
Q Consensus 151 ~v~i~iGTP~q~~~lilDTGS~~~Wv~~~~ 180 (478)
+++|.|. .+++.+++||||+.+-|+...
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceecccc
Confidence 6778888 789999999999999987653
No 38
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=83.31 E-value=2.5 Score=36.36 Aligned_cols=36 Identities=28% Similarity=0.437 Sum_probs=28.8
Q ss_pred CeeEEEEEeEEEEcCeEeecCCcccccccCCCCcEEEccCcceeeecHHHHHHH
Q 011749 321 DTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNAL 374 (478)
Q Consensus 321 ~~~y~v~l~gIsVgg~~l~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l 374 (478)
..+|+++ +.|+|+.+. ++||||.+.+.++++..+++
T Consensus 9 ~g~~~v~---~~InG~~~~---------------flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYAT---GRVNGRNVR---------------FLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEEE---EEECCEEEE---------------EEEECCCCcEEcCHHHHHHc
Confidence 4667666 678888553 59999999999999988776
No 39
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=79.25 E-value=3.3 Score=33.39 Aligned_cols=30 Identities=30% Similarity=0.529 Sum_probs=25.7
Q ss_pred EEEcCeEeecCCcccccccCCCCcEEEccCcceeeecHHHHHHHH
Q 011749 331 ISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNALR 375 (478)
Q Consensus 331 IsVgg~~l~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l~ 375 (478)
+.|+|+.+. +.||||++.+.++++.+.++-
T Consensus 5 ~~Ing~~i~---------------~lvDTGA~~svis~~~~~~lg 34 (91)
T cd05484 5 LLVNGKPLK---------------FQLDTGSAITVISEKTWRKLG 34 (91)
T ss_pred EEECCEEEE---------------EEEcCCcceEEeCHHHHHHhC
Confidence 678888775 499999999999999998763
No 40
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=77.60 E-value=18 Score=32.88 Aligned_cols=22 Identities=18% Similarity=0.459 Sum_probs=19.0
Q ss_pred cEEEccCcceeeecHHHHHHHH
Q 011749 354 GIIVDSGTAVTRLQTETYNALR 375 (478)
Q Consensus 354 ~~iiDSGTt~t~Lp~~~y~~l~ 375 (478)
.++||||++......+..+.|.
T Consensus 47 ~vLfDSGSPTSfIr~di~~kL~ 68 (177)
T PF12384_consen 47 KVLFDSGSPTSFIRSDIVEKLE 68 (177)
T ss_pred EEEEeCCCccceeehhhHHhhC
Confidence 3699999999999998888774
No 41
>PF13650 Asp_protease_2: Aspartyl protease
Probab=76.16 E-value=3.6 Score=32.46 Aligned_cols=20 Identities=15% Similarity=0.466 Sum_probs=18.4
Q ss_pred EEEccCcceeeecHHHHHHH
Q 011749 355 IIVDSGTAVTRLQTETYNAL 374 (478)
Q Consensus 355 ~iiDSGTt~t~Lp~~~y~~l 374 (478)
++||||.+.+.+.++.++++
T Consensus 12 ~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 12 FLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEEcCCCCcEEECHHHHHHc
Confidence 59999999999999998877
No 42
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=73.59 E-value=6.3 Score=31.37 Aligned_cols=29 Identities=21% Similarity=0.485 Sum_probs=23.7
Q ss_pred EEEcCeEeecCCcccccccCCCCcEEEccCcceeeecHHHHHHH
Q 011749 331 ISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNAL 374 (478)
Q Consensus 331 IsVgg~~l~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l 374 (478)
+.|+++.+. ++||||++.+.++.+..+.+
T Consensus 7 v~i~~~~~~---------------~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 7 VTINGQPVR---------------FLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEECCEEEE---------------EEEECCCCcEEcCHHHHHHc
Confidence 677777654 59999999999999877765
No 43
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=71.78 E-value=4.3 Score=32.89 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=21.4
Q ss_pred EEEecCCCcEEEEEEeCCCCcceEeCC
Q 011749 153 RVGIGKPPSQVYMVLDTGSDVNWLQCA 179 (478)
Q Consensus 153 ~i~iGTP~q~~~lilDTGS~~~Wv~~~ 179 (478)
.+.|+ .|.+.+++|||.|++-+.-.
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 46677 89999999999999998753
No 44
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=66.74 E-value=6.4 Score=31.48 Aligned_cols=26 Identities=15% Similarity=0.293 Sum_probs=21.5
Q ss_pred EEEecCCCcEEEEEEeCCCCcceEeCCC
Q 011749 153 RVGIGKPPSQVYMVLDTGSDVNWLQCAP 180 (478)
Q Consensus 153 ~i~iGTP~q~~~lilDTGS~~~Wv~~~~ 180 (478)
.+.|. ++++.+++|||++.+-+....
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~ 27 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDL 27 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHH
Confidence 45666 789999999999999997553
No 45
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=65.17 E-value=15 Score=34.60 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=28.3
Q ss_pred CCeeEEEEEEecCCCcEEEEEEeCCCCcceEeCC
Q 011749 146 GSGEYFSRVGIGKPPSQVYMVLDTGSDVNWLQCA 179 (478)
Q Consensus 146 ~~g~Y~v~i~iGTP~q~~~lilDTGS~~~Wv~~~ 179 (478)
++|-|.++..|- +|++.+++|||-+.+-+.-+
T Consensus 102 ~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~ 133 (215)
T COG3577 102 RDGHFEANGRVN--GKKVDFLVDTGATSVALNEE 133 (215)
T ss_pred CCCcEEEEEEEC--CEEEEEEEecCcceeecCHH
Confidence 479999999999 99999999999998877544
No 46
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=60.66 E-value=39 Score=27.50 Aligned_cols=80 Identities=16% Similarity=0.242 Sum_probs=44.6
Q ss_pred CCCcEEEccCcceeeecHHHHHHHHHHHHhhccCCCCCCCccccccccccCCCCccccceEEEEeCCCcEEEeCCCceE-
Q 011749 351 GNGGIIVDSGTAVTRLQTETYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNFL- 429 (478)
Q Consensus 351 ~~~~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~l~f~f~gg~~~~l~~~~yl- 429 (478)
.+-..+||||..+..+|....+.- . .-.++.++=++|..+..-.+..+
T Consensus 8 s~~~fLVDTGA~vSviP~~~~~~~---~----------------------------~~~~~~l~AANgt~I~tyG~~~l~ 56 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASSTKKS---L----------------------------KPSPLTLQAANGTPIATYGTRSLT 56 (89)
T ss_pred CCcEEEEeCCCceEeecccccccc---c----------------------------cCCceEEEeCCCCeEeeeeeEEEE
Confidence 344679999999999997654431 0 11234555556665555544333
Q ss_pred EEecCCCcEEEEEEeCCCCceEecHhhhcceE
Q 011749 430 IPVDSNGTFCFAFAPTSSSLSIIGNVQQQGTR 461 (478)
Q Consensus 430 ~~~~~~~~~Cl~~~~~~~~~~IlG~~fl~~~y 461 (478)
+.......+=+-|.-.+-+..|||.-||++|-
T Consensus 57 ldlGlrr~~~w~FvvAdv~~pIlGaDfL~~~~ 88 (89)
T cd06094 57 LDLGLRRPFAWNFVVADVPHPILGADFLQHYG 88 (89)
T ss_pred EEcCCCcEEeEEEEEcCCCcceecHHHHHHcC
Confidence 22221111222333333356899999999863
No 47
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=60.04 E-value=14 Score=28.56 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=25.0
Q ss_pred EEEcCeEeecCCcccccccCCCCcEEEccCcceeeecHHHHHHH
Q 011749 331 ISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNAL 374 (478)
Q Consensus 331 IsVgg~~l~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l 374 (478)
+.|+|+.+. ++||||.+...++.+..+.|
T Consensus 13 ~~I~g~~~~---------------alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQVK---------------ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEEE---------------EEEeCCCcceecCHHHHHHh
Confidence 678887664 59999999999999999887
No 48
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=57.30 E-value=14 Score=29.40 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=24.1
Q ss_pred EEEcCeEeecCCcccccccCCCCcEEEccCcceeeecHHHHHHH
Q 011749 331 ISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNAL 374 (478)
Q Consensus 331 IsVgg~~l~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l 374 (478)
+.|+|+.+. .++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~~---------------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV---------------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE---------------EEEECCCCeEEECHHHhhhc
Confidence 567777654 49999999999999998875
No 49
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=38.66 E-value=36 Score=27.70 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=19.2
Q ss_pred cEEEccCcceeeecHHHHHHHH
Q 011749 354 GIIVDSGTAVTRLQTETYNALR 375 (478)
Q Consensus 354 ~~iiDSGTt~t~Lp~~~y~~l~ 375 (478)
.+.+|||.+...+|...|..+-
T Consensus 12 ~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 12 KFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEecCCEEEeccHHHHhhhc
Confidence 3589999999999999888874
No 50
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=38.17 E-value=41 Score=30.62 Aligned_cols=28 Identities=14% Similarity=0.357 Sum_probs=21.6
Q ss_pred EEEEecCCCcEEEEEEeCCCCcceEeCC
Q 011749 152 SRVGIGKPPSQVYMVLDTGSDVNWLQCA 179 (478)
Q Consensus 152 v~i~iGTP~q~~~lilDTGS~~~Wv~~~ 179 (478)
..+.++.-..+++++|||||....|...
T Consensus 35 ~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 35 AIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEeecCcEEEEEEeCCCccceeehh
Confidence 3444444589999999999999988654
No 51
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=35.48 E-value=60 Score=30.59 Aligned_cols=27 Identities=15% Similarity=0.033 Sum_probs=18.6
Q ss_pred CCceEecHhhhcceEEEEeCCCCEEEEe
Q 011749 447 SSLSIIGNVQQQGTRVSFNLRNSLVGFT 474 (478)
Q Consensus 447 ~~~~IlG~~fl~~~yvvfD~~~~rIGFa 474 (478)
+-..|||+.|+|.|+=-...+ .+|-|-
T Consensus 90 g~d~IlG~NF~r~y~Pfiq~~-~~I~f~ 116 (201)
T PF02160_consen 90 GIDIILGNNFLRLYEPFIQTE-DRIQFH 116 (201)
T ss_pred CCCEEecchHHHhcCCcEEEc-cEEEEE
Confidence 345999999999876555554 356654
No 52
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=35.27 E-value=35 Score=27.56 Aligned_cols=27 Identities=15% Similarity=0.500 Sum_probs=20.8
Q ss_pred EEEEcCeEeecCCcccccccCCCCcEEEccCcceeeecHHHH
Q 011749 330 GISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETY 371 (478)
Q Consensus 330 gIsVgg~~l~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y 371 (478)
.|.++|+.+. ++||||...+.++.+.+
T Consensus 9 ~v~i~g~~i~---------------~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 9 TVKINGKKIK---------------ALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEETTEEEE---------------EEEETTBSSEEESSGGS
T ss_pred EEeECCEEEE---------------EEEecCCCcceeccccc
Confidence 3667777654 59999999999997643
No 53
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=33.90 E-value=87 Score=29.63 Aligned_cols=44 Identities=23% Similarity=0.357 Sum_probs=32.6
Q ss_pred eeecccCCCCCeeEEEEEeEEEEcCeEeecCCcccccccCCCCcEEEccCcceeeecHHHHHHH
Q 011749 311 TAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNAL 374 (478)
Q Consensus 311 ~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l 374 (478)
.+.+.++. .++|.++ ..|+|+.+. .++|||.|.+.|+++..+.+
T Consensus 95 ~v~Lak~~--~GHF~a~---~~VNGk~v~---------------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 95 EVSLAKSR--DGHFEAN---GRVNGKKVD---------------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred EEEEEecC--CCcEEEE---EEECCEEEE---------------EEEecCcceeecCHHHHHHh
Confidence 34444433 5667665 689999886 49999999999999877665
No 54
>PF15240 Pro-rich: Proline-rich
Probab=33.81 E-value=31 Score=31.82 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=17.5
Q ss_pred hhhHHHHHHHhhccCCCccCCccC
Q 011749 3 LLFHVLSAALLFASSPFGDSRTTP 26 (478)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~ 26 (478)
+||.|||++||-||++-.....+.
T Consensus 1 MLlVLLSvALLALSSAQ~~dEdv~ 24 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQSTDEDVS 24 (179)
T ss_pred ChhHHHHHHHHHhhhccccccccc
Confidence 478899999999999654444443
No 55
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=29.13 E-value=73 Score=27.62 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=23.3
Q ss_pred EEEcCeEeecCCcccccccCCCCcEEEccCcceeeecHHHHHHH
Q 011749 331 ISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNAL 374 (478)
Q Consensus 331 IsVgg~~l~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l 374 (478)
++++|+.+. +.||||+..+.++....+++
T Consensus 29 ~~ing~~vk---------------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 29 CKINGVPVK---------------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEETTEEEE---------------EEEETT-SS-EEEHHHHHHT
T ss_pred EEECCEEEE---------------EEEeCCCCccccCHHHHHHc
Confidence 678888774 69999999999999998885
No 56
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=29.07 E-value=41 Score=29.05 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=18.7
Q ss_pred EEEccCcc-eeeecHHHHHHHH
Q 011749 355 IIVDSGTA-VTRLQTETYNALR 375 (478)
Q Consensus 355 ~iiDSGTt-~t~Lp~~~y~~l~ 375 (478)
.+||||-+ ++.+|+++++++-
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~~ 50 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKLG 50 (125)
T ss_pred eEEecCCceeEEeCHHHHHhcC
Confidence 38999999 9999999999873
No 57
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=27.79 E-value=96 Score=26.88 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=24.5
Q ss_pred eeEEEEEEecCCCcEEEEEEeCCCCcceEeCCCCCCc
Q 011749 148 GEYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADC 184 (478)
Q Consensus 148 g~Y~v~i~iGTP~q~~~lilDTGS~~~Wv~~~~C~~C 184 (478)
...|+++.|+ .+++.+.+|||.-.+-+.-+-+..|
T Consensus 23 ~mLyI~~~in--g~~vkA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 23 SMLYINCKIN--GVPVKAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp ---EEEEEET--TEEEEEEEETT-SS-EEEHHHHHHT
T ss_pred ceEEEEEEEC--CEEEEEEEeCCCCccccCHHHHHHc
Confidence 5689999999 8999999999999888764422345
No 58
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=25.98 E-value=46 Score=27.05 Aligned_cols=18 Identities=39% Similarity=0.449 Sum_probs=15.7
Q ss_pred cEEEEEEeCCCCcceEeC
Q 011749 161 SQVYMVLDTGSDVNWLQC 178 (478)
Q Consensus 161 q~~~lilDTGS~~~Wv~~ 178 (478)
+++++.+|||++..-++-
T Consensus 9 ~~v~~~vDtGA~vnllp~ 26 (93)
T cd05481 9 QSVKFQLDTGATCNVLPL 26 (93)
T ss_pred eeEEEEEecCCEEEeccH
Confidence 899999999999887753
Done!