BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011750
         (478 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1R1K|D Chain D, Crystal Structure Of The Ligand-Binding Domains Of The
           Heterodimer EcrUSP BOUND TO PONASTERONE A
 pdb|2R40|D Chain D, Crystal Structure Of 20e Bound Ecr/usp
          Length = 266

 Score = 32.0 bits (71), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 12/42 (28%), Positives = 24/42 (57%)

Query: 100 KVGIALTVVSLFYYTRPLYEGVGGNAMWAIMTVVVVFENTVG 141
           K G+A  +  L ++ R +Y  +  N  +A++T +V+F +  G
Sbjct: 144 KAGMAYVIEDLLHFCRCMYSMMMDNVHYALLTAIVIFSDRPG 185


>pdb|1R20|D Chain D, Crystal Structure Of The Ligand-Binding Domains Of The
           Heterodimer EcrUSP BOUND TO THE SYNTHETIC AGONIST
           BYI06830
 pdb|3IXP|D Chain D, Crystal Structure Of The Ecdysone Receptor Bound To
           Byi08346
          Length = 265

 Score = 31.6 bits (70), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 12/42 (28%), Positives = 24/42 (57%)

Query: 100 KVGIALTVVSLFYYTRPLYEGVGGNAMWAIMTVVVVFENTVG 141
           K G+A  +  L ++ R +Y  +  N  +A++T +V+F +  G
Sbjct: 143 KAGMAYVIEDLLHFCRCMYSMMMDNVHYALLTAIVIFSDRPG 184


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,197,431
Number of Sequences: 62578
Number of extensions: 384509
Number of successful extensions: 598
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 596
Number of HSP's gapped (non-prelim): 2
length of query: 478
length of database: 14,973,337
effective HSP length: 103
effective length of query: 375
effective length of database: 8,527,803
effective search space: 3197926125
effective search space used: 3197926125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)