Query 011750
Match_columns 478
No_of_seqs 338 out of 1219
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 04:49:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011750.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011750hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11744 ALMT: Aluminium activ 100.0 7.7E-87 1.7E-91 692.4 38.7 362 85-446 1-406 (406)
2 KOG4711 Predicted membrane pro 100.0 1.6E-63 3.5E-68 536.0 20.7 394 70-464 68-606 (625)
3 TIGR01667 YCCS_YHJK integral m 100.0 2.2E-27 4.7E-32 263.6 34.2 316 15-389 328-646 (701)
4 TIGR01666 YCCS hypothetical me 100.0 2E-26 4.2E-31 255.5 33.7 315 15-391 329-645 (704)
5 PF04632 FUSC: Fusaric acid re 99.9 3.6E-24 7.7E-29 236.6 32.8 172 94-279 1-175 (650)
6 PRK10631 p-hydroxybenzoic acid 99.9 2.8E-22 6.1E-27 220.0 30.0 178 88-279 2-191 (652)
7 PRK11427 multidrug efflux syst 99.9 7E-20 1.5E-24 200.5 34.3 182 87-279 343-526 (683)
8 COG1289 Predicted membrane pro 99.7 4E-16 8.6E-21 174.2 27.1 183 84-282 344-527 (674)
9 PRK11427 multidrug efflux syst 99.6 5.5E-14 1.2E-18 154.5 26.9 172 90-279 25-203 (683)
10 PF13515 FUSC_2: Fusaric acid 99.6 4.4E-15 9.6E-20 130.7 13.8 114 123-249 12-128 (128)
11 COG4129 Predicted membrane pro 99.6 6.9E-12 1.5E-16 128.5 30.5 161 96-279 11-171 (332)
12 PF06081 DUF939: Bacterial pro 99.5 4.4E-13 9.6E-18 121.8 16.1 136 97-253 6-141 (141)
13 COG1289 Predicted membrane pro 99.5 1.8E-11 3.9E-16 137.0 27.6 168 93-273 9-179 (674)
14 PF04632 FUSC: Fusaric acid re 99.2 1.9E-08 4.2E-13 111.7 32.2 178 90-279 335-515 (650)
15 PF10337 DUF2422: Protein of u 98.9 1E-06 2.2E-11 94.7 29.8 242 90-335 11-297 (459)
16 PF12805 FUSC-like: FUSC-like 98.7 1.5E-05 3.2E-10 80.5 25.8 151 231-388 70-254 (284)
17 TIGR01666 YCCS hypothetical me 98.5 0.00011 2.4E-09 82.9 29.6 172 94-281 7-178 (704)
18 TIGR01667 YCCS_YHJK integral m 98.5 4.6E-05 1E-09 86.0 26.5 266 94-388 7-310 (701)
19 PF10334 DUF2421: Protein of u 98.2 0.00012 2.6E-09 71.7 19.3 155 280-446 67-225 (229)
20 PRK10631 p-hydroxybenzoic acid 98.2 0.0022 4.7E-08 71.8 29.6 164 95-271 353-519 (652)
21 PF11168 DUF2955: Protein of u 96.0 0.25 5.5E-06 44.9 14.1 136 98-252 2-139 (140)
22 TIGR02865 spore_II_E stage II 87.6 62 0.0013 37.6 26.9 119 148-282 189-328 (764)
23 PF10225 DUF2215: Uncharacteri 85.0 44 0.00095 33.4 16.6 83 192-277 56-141 (249)
24 PF12732 YtxH: YtxH-like prote 77.1 9.7 0.00021 30.5 6.5 43 237-280 3-45 (74)
25 PF06081 DUF939: Bacterial pro 70.9 19 0.00042 32.5 7.6 46 120-166 94-139 (141)
26 COG4980 GvpP Gas vesicle prote 64.2 1E+02 0.0023 27.3 11.1 37 236-273 8-44 (115)
27 COG5336 Uncharacterized protei 63.8 27 0.00059 30.6 6.5 43 147-195 49-91 (116)
28 PF12841 YvrJ: YvrJ protein fa 63.1 18 0.0004 25.7 4.4 31 417-447 6-36 (38)
29 PF13295 DUF4077: Domain of un 63.1 48 0.001 29.5 8.1 79 180-263 54-144 (175)
30 TIGR00796 livcs branched-chain 56.9 2.7E+02 0.0058 29.6 18.0 78 80-166 199-279 (378)
31 PF01865 PhoU_div: Protein of 52.4 1.1E+02 0.0023 29.2 9.5 33 328-364 107-139 (214)
32 PRK12821 aspartyl/glutamyl-tRN 51.5 2.5E+02 0.0054 30.7 12.5 114 136-251 93-239 (477)
33 TIGR00930 2a30 K-Cl cotranspor 50.4 2.7E+02 0.0059 33.3 14.0 27 138-165 140-166 (953)
34 PF07155 ECF-ribofla_trS: ECF- 48.3 1.9E+02 0.0041 26.4 10.1 19 152-170 49-67 (169)
35 PF15225 IL32: Interleukin 32 48.2 47 0.001 28.0 5.2 42 46-87 27-68 (104)
36 PRK09823 putative inner membra 47.6 2E+02 0.0044 26.3 9.5 90 147-253 12-104 (160)
37 PRK11715 inner membrane protei 45.7 1.4E+02 0.003 32.5 9.8 41 124-164 359-401 (436)
38 PF06123 CreD: Inner membrane 45.0 1.6E+02 0.0034 31.9 10.1 71 95-167 325-398 (430)
39 PF04286 DUF445: Protein of un 44.6 18 0.00039 37.0 2.9 21 148-168 344-364 (367)
40 PRK10263 DNA translocase FtsK; 41.5 6.8E+02 0.015 31.2 15.3 14 140-153 67-80 (1355)
41 PRK09776 putative diguanylate 41.4 4.7E+02 0.01 30.9 14.4 37 124-166 25-61 (1092)
42 PRK11060 rod shape-determining 40.6 1.6E+02 0.0036 27.5 8.3 17 124-140 35-53 (162)
43 PF03419 Peptidase_U4: Sporula 40.5 1.3E+02 0.0029 30.4 8.4 18 149-166 35-52 (293)
44 PF05478 Prominin: Prominin; 38.0 7.2E+02 0.016 29.1 19.3 39 239-279 153-191 (806)
45 PF09877 DUF2104: Predicted me 37.7 2.5E+02 0.0054 24.2 8.1 19 151-169 9-27 (99)
46 COG4956 Integral membrane prot 37.2 2.4E+02 0.0051 29.4 9.3 28 146-173 3-31 (356)
47 PF04018 DUF368: Domain of unk 37.0 4.5E+02 0.0098 26.5 13.8 74 125-200 85-161 (257)
48 COG3275 LytS Putative regulato 36.3 2.5E+02 0.0055 31.0 9.8 57 148-205 68-133 (557)
49 PF13515 FUSC_2: Fusaric acid 34.9 1E+02 0.0022 26.4 5.7 41 213-256 19-59 (128)
50 PRK11677 hypothetical protein; 34.1 95 0.0021 28.2 5.4 33 236-268 7-40 (134)
51 PF06496 DUF1097: Protein of u 33.9 3.6E+02 0.0077 24.4 15.5 68 124-193 20-87 (144)
52 PF10158 LOH1CR12: Tumour supp 33.0 3.1E+02 0.0067 24.8 8.5 52 336-387 53-104 (131)
53 PF11368 DUF3169: Protein of u 32.8 3.1E+02 0.0068 27.0 9.5 18 151-168 16-33 (248)
54 COG5547 Small integral membran 31.8 2E+02 0.0042 22.5 5.9 25 144-168 4-28 (62)
55 COG4980 GvpP Gas vesicle prote 30.6 49 0.0011 29.3 2.9 23 151-173 8-31 (115)
56 PRK11660 putative transporter; 29.4 3.2E+02 0.007 30.4 9.9 15 238-252 425-439 (568)
57 KOG2163 Centromere/kinetochore 27.9 6.2E+02 0.013 28.9 11.2 114 259-395 533-646 (719)
58 COG2211 MelB Na+/melibiose sym 27.6 8.5E+02 0.018 26.8 12.3 70 103-173 91-178 (467)
59 COG4258 Predicted exporter [Ge 27.4 5.9E+02 0.013 29.1 10.9 110 142-257 663-783 (788)
60 PF10031 DUF2273: Small integr 27.3 1.6E+02 0.0035 22.2 4.9 17 149-165 9-25 (51)
61 PF10011 DUF2254: Predicted me 26.8 7.6E+02 0.017 25.9 14.1 43 203-248 95-137 (371)
62 COG2733 Predicted membrane pro 26.5 28 0.00062 36.9 0.9 22 148-169 391-412 (415)
63 PRK15041 methyl-accepting chem 26.3 9.1E+02 0.02 26.6 18.2 22 428-449 354-375 (554)
64 COG0555 CysU ABC-type sulfate 26.3 7.1E+02 0.015 25.4 10.7 48 230-277 129-176 (274)
65 PF06738 DUF1212: Protein of u 26.2 3.3E+02 0.0071 25.4 8.0 11 21-31 15-25 (193)
66 PF11744 ALMT: Aluminium activ 25.9 7.7E+02 0.017 26.5 11.5 73 93-166 92-167 (406)
67 COG4452 CreD Inner membrane pr 25.0 4.7E+02 0.01 28.1 9.2 28 142-169 371-398 (443)
68 PF14351 DUF4401: Domain of un 24.7 7.6E+02 0.017 25.2 12.3 64 97-163 58-122 (326)
69 PF11085 YqhR: Conserved membr 24.0 6.3E+02 0.014 24.0 10.8 24 134-160 53-76 (173)
70 PRK11412 putative uracil/xanth 23.9 9.4E+02 0.02 26.0 13.0 42 209-255 174-215 (433)
71 TIGR03480 HpnN hopanoid biosyn 23.6 1.1E+03 0.025 27.5 13.4 20 237-256 835-854 (862)
72 PF10031 DUF2273: Small integr 23.4 2.8E+02 0.006 20.9 5.5 26 147-172 3-28 (51)
73 COG0659 SUL1 Sulfate permease 23.1 4.7E+02 0.01 29.3 9.6 23 148-170 320-342 (554)
74 PF05433 Rick_17kDa_Anti: Glyc 23.1 43 0.00093 24.2 1.0 13 153-165 2-14 (42)
75 PF04982 HPP: HPP family; Int 23.1 5.2E+02 0.011 22.7 10.5 41 127-169 6-46 (120)
76 PF10779 XhlA: Haemolysin XhlA 22.4 1.6E+02 0.0035 23.4 4.4 17 151-167 53-69 (71)
77 PF06295 DUF1043: Protein of u 22.2 2.1E+02 0.0047 25.4 5.6 20 237-256 4-23 (128)
78 PF09010 AsiA: Anti-Sigma Fact 22.2 97 0.0021 26.3 3.0 41 420-464 10-55 (91)
79 PF10428 SOG2: RAM signalling 22.1 7.2E+02 0.016 27.0 10.6 124 300-448 303-436 (445)
80 COG2178 Predicted RNA-binding 22.0 4.8E+02 0.01 25.4 8.1 54 337-391 18-71 (204)
81 KOG2927 Membrane component of 21.7 1.3E+02 0.0028 31.7 4.4 26 229-256 233-261 (372)
82 PF14015 DUF4231: Protein of u 21.6 2.8E+02 0.0061 23.3 6.0 10 153-162 28-37 (112)
83 TIGR00153 conserved hypothetic 21.2 7.3E+02 0.016 23.7 12.3 21 427-447 187-207 (216)
84 COG0670 Integral membrane prot 21.2 8.1E+02 0.017 24.2 14.3 45 210-254 123-167 (233)
85 PRK14562 haloacid dehalogenase 20.7 3.7E+02 0.0081 25.9 7.3 21 429-449 109-129 (204)
86 PRK10929 putative mechanosensi 20.1 1.7E+03 0.036 27.4 17.0 26 84-109 506-531 (1109)
No 1
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=100.00 E-value=7.7e-87 Score=692.44 Aligned_cols=362 Identities=56% Similarity=0.965 Sum_probs=343.5
Q ss_pred HhhcCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhccCCCchHHHHHhHHhcccChhHHHHHHHHHHHHHHHHHHHHHHH
Q 011750 85 WDLGVDDPRKVIHCLKVGIALTVVSLFYYTRPLYEGVGGNAMWAIMTVVVVFENTVGATIAKCLNRVFGTLLAGFLALGV 164 (478)
Q Consensus 85 ~~~~~~d~rr~~~AlKv~lA~~L~sll~~~~~~~~~l~~~g~WAvlTvvvV~qpsvGaTl~kg~~RilGTliG~~lgl~~ 164 (478)
|++|++||||++|++|+|+|++|++++||..+.|.+++.+++||++||++|++||+|+|+.||++|++||++||++|+++
T Consensus 1 w~~g~~d~rr~~~~lkvglal~lvsl~~~~~~~~~~~~~~~~WavlTVvvvfe~tvGatl~KG~nR~lGTl~aG~La~~~ 80 (406)
T PF11744_consen 1 WKFGKDDPRRVIHSLKVGLALTLVSLLYFVGPLYDGFGQNAMWAVLTVVVVFEPTVGATLSKGLNRGLGTLLAGILAFGV 80 (406)
T ss_pred CcccccCcchhhhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHhhhHhhccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHH
Q 011750 165 HWIASQSGEKLEPLIAGASLFLLASAATFSRFIPTFKARFDYGALIFILTFSLVTVSGYRVDKLFNMAHQRISTIVIGTS 244 (478)
Q Consensus 165 ~~l~~~~G~~~~p~ll~~~vfl~~~~a~~~~~~p~~k~~y~yg~~if~lT~~LV~l~~~~~~~~~~~A~~Rl~~I~IGi~ 244 (478)
.+++..+|+.++++++++++|+++++++|.+++|.+|+||+||+++|++||++|++++|++++.+.+|.+|+++|++|++
T Consensus 81 ~~la~~~g~~~~~~~i~~~vFi~~~~atf~r~~P~~k~rydYg~~Vf~LTf~lV~vs~yr~~~~~~~A~~R~~~I~iGv~ 160 (406)
T PF11744_consen 81 SWLASLSGDPGEPIVIGISVFIIGFIATFVRFIPKIKARYDYGGLVFILTFCLVAVSGYRTDEFLMLAVWRLLTIVIGVA 160 (406)
T ss_pred HHHHHhcCccchhHHHHHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHhheeecCCcchHHHHHHHHHHHHHHHHH
Confidence 99999999878999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHH----------------------------------------Hhhhh
Q 011750 245 LCILVSMLIRPIWAGKDLYNLIIRNMDKLANSIDG----------------------------------------LANFA 284 (478)
Q Consensus 245 iAllVs~~i~P~~A~~~L~~~la~~l~~la~~le~----------------------------------------L~~~a 284 (478)
+|++|+++|||+||+++||+.++++++++++++++ |+++|
T Consensus 161 i~l~vsi~IfPvwAg~~Lh~~~a~~leklA~~le~~v~~y~~~~~~~~~~~~~~~~~~~~~~yk~vl~Sk~~eesL~~~A 240 (406)
T PF11744_consen 161 ICLLVSIFIFPVWAGEDLHKLTAKNLEKLANSLEGCVEEYFKCSEDEILDYQQESDDPLLQGYKSVLNSKSQEESLANFA 240 (406)
T ss_pred HHHHHHHheeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccccccccccHHHHhhhHHhCCcccHHHHhhhh
Confidence 99999999999999999999999999999999998 88999
Q ss_pred ccCCCCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 011750 285 RWEPAHGRFNFRHPWKQYLKVGAAVRRCAYCIEALNACINSENQAPEFIKKLLCNTCLRVSSNSSRVVKELAKIIKTMKK 364 (478)
Q Consensus 285 ~~Ep~~g~~~~~~p~~~y~ki~~~lR~~a~~i~aL~~~l~~~~q~p~~lr~~l~~~~~~l~~~~~~vL~~La~si~~m~~ 364 (478)
+|||+||+|+++|||++|.|+++++|||+|+++|||+|+++++|+|+++|++++++|.+++.|++++|+||+.++++|++
T Consensus 241 ~WEP~HG~f~f~~Pw~~Y~kig~~lR~cay~v~AL~gcl~seiq~p~~~r~~~~~~~~~~~~e~~kvLrel~~~ik~m~~ 320 (406)
T PF11744_consen 241 RWEPPHGRFRFRHPWKQYLKIGALLRHCAYCVEALHGCLNSEIQAPPELRQKFQEECTRVSSESAKVLRELSNSIKTMTK 320 (406)
T ss_pred hhcccccCCccCCcHHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhHHHHHHHHHHHHHHHhhccccccCCccccc--cccccCC--CCccccccccchHHHHHHHHHHHHHHHHHHHH
Q 011750 365 SSTIDLLVEEMNAAVKELKDDLKSLSLSEAGTSENKR--TEKISSK--PAAAIPLMGMISMVSFASFQIEIASRIESIVE 440 (478)
Q Consensus 365 ~~~~~~~~~~l~~A~~~L~~~i~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~t~~slLie~v~~~~~~~~ 440 (478)
+++.+.++.++|+|+|+||++|+++|+++.+++.... .+++..+ +.+++|+++++|++||||||||+|+|+|+|+|
T Consensus 321 ~~~~~~~~~~~~~A~~~Lq~~l~~~~~ll~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~lat~aSlLie~v~r~~~iv~ 400 (406)
T PF11744_consen 321 SSSIDDHVANLKEAAEDLQSKLDSQSYLLLNSESPERSFLRPQSSKEAEWTSYELLEALPLATFASLLIEFVARLENIVE 400 (406)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhCCccccCCchhhhhhccccccccccccchhHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 9887888999999999999999999999887542110 1112222 23678999999999999999999999999999
Q ss_pred HHHHHH
Q 011750 441 AVEELA 446 (478)
Q Consensus 441 ~v~eL~ 446 (478)
+|||||
T Consensus 401 ~v~eLa 406 (406)
T PF11744_consen 401 AVEELA 406 (406)
T ss_pred HHHhhC
Confidence 999996
No 2
>KOG4711 consensus Predicted membrane protein [General function prediction only]
Probab=100.00 E-value=1.6e-63 Score=535.96 Aligned_cols=394 Identities=43% Similarity=0.727 Sum_probs=361.7
Q ss_pred HhhHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhccCCCchHHHHHhHHhcccChhHHHHHHHH
Q 011750 70 IGGLVLKVWRFLEKAWDLGVDDPRKVIHCLKVGIALTVVSLFYYTRPLYEGVGGNAMWAIMTVVVVFENTVGATIAKCLN 149 (478)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~d~rr~~~AlKv~lA~~L~sll~~~~~~~~~l~~~g~WAvlTvvvV~qpsvGaTl~kg~~ 149 (478)
......|+.++.++.|+++++||||++|++|+|+|++|+++++|..+++.+++.+++||++|+++|+++++|+|+.||++
T Consensus 68 ~~~~~~kv~~~~~~~~~~g~~dprrviha~KvglaltL~S~~y~~~~~~~~ig~~~~wai~tvvvv~e~svgatl~kgln 147 (625)
T KOG4711|consen 68 ELELSAKVSKIARNLWEVGKEDPRRVIHAFKVGLALTLVSFLYFMKPLYKGIGVNALWAILTVVVVFEFSVGATLSKGLN 147 (625)
T ss_pred ccchHHHHHHHHhhhhhcCCCChhhhhhhhhccchhhhhhheeeccccccccchhhhheeeEEEEEEEeccchHHHHhHH
Confidence 44456899999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHccCCchhHH
Q 011750 150 RVFGTLLAGFLALGVHWIASQSGEKLEPLIAGASLFLLASAATFSRFIPTFKARFDYGALIFILTFSLVTVSGYRVDKLF 229 (478)
Q Consensus 150 RilGTliG~~lgl~~~~l~~~~G~~~~p~ll~~~vfl~~~~a~~~~~~p~~k~~y~yg~~if~lT~~LV~l~~~~~~~~~ 229 (478)
|.+||+.+|.+|+.+.+++..+|..+++++++..+|+.++.++|++|+|.+|+ |+|+++||.+||+++.+++++.+.++
T Consensus 148 r~v~tL~ag~l~l~~~~la~~~g~~~~~i~~~~~vF~~~~~~ty~~f~p~iK~-y~y~~lIf~ltf~l~~vs~~r~~~~~ 226 (625)
T KOG4711|consen 148 RAVGTLSAGGLALGIERLAEISGKDNESIFIGITVFIAGAKATYSLFFPYIKA-YEYGFLIFILTFCLVEVSGYRSDYFL 226 (625)
T ss_pred HHHHHhhhhhhhhhhHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhchhhhc-cchhhhHHHHHhhhheecccchhHHH
Confidence 99999999999999999999999668899999999999999999999999997 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHH------------------------------
Q 011750 230 NMAHQRISTIVIGTSLCILVSMLIRPIWAGKDLYNLIIRNMDKLANSIDG------------------------------ 279 (478)
Q Consensus 230 ~~A~~Rl~~I~IGi~iAllVs~~i~P~~A~~~L~~~la~~l~~la~~le~------------------------------ 279 (478)
+.|..|+++|.+|..+|++|++|+||.||+++||+..+.++..++.++|+
T Consensus 227 ~~a~~Rl~~i~~g~~vcliis~f~~PiwAgedlh~l~~~n~~~~a~sleg~~~~~~~~~~~y~~~~~i~~~s~~~~~~s~ 306 (625)
T KOG4711|consen 227 ELALQRLLLIVIGGGVCLIISRFIFPIWAGEDLHKLDSKNFKNLASSLEGRKFTASCFNGEYFCVEKIEILSIPTFYKSA 306 (625)
T ss_pred HHHHHHHHHHhhCcceeEEEEEEEeeccchhhhhhhhhhhhhhhhhhhcchhhhhhhhcchheeehhhhhcchhhhhhhc
Confidence 99999999999999999999999999999999999999999999999993
Q ss_pred ---------------------HhhhhccCCCCC-CcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHH
Q 011750 280 ---------------------LANFARWEPAHG-RFNFRHPWKQYLKVGAAVRRCAYCIEALNACINSENQAPEFIKKLL 337 (478)
Q Consensus 280 ---------------------L~~~a~~Ep~~g-~~~~~~p~~~y~ki~~~lR~~a~~i~aL~~~l~~~~q~p~~lr~~l 337 (478)
++++|.|||+|| .+.++|||++|.+++.++|||++++++||+|+.+++|+|.+++..+
T Consensus 307 ~~~~~~~Gy~svl~s~s~ee~l~~~A~Wep~hG~~~~f~~Pw~~Yvk~~~~~r~ca~~i~alh~~l~s~~qap~~~~~~~ 386 (625)
T KOG4711|consen 307 AWYPLYNGYWSVLQSKSQEERLANFAIWEPPHGPYFTFRHPWKNYVKLGGALRQCAFIIMALHGCLLSEIQAPRDLRNKF 386 (625)
T ss_pred chhhhhcchhHHhhhhhHHHHHHHHheecCCCCCceeeecchhHeeehhhHHHHHHHHHHHhcccccccccCcHHHHHHH
Confidence 789999999999 6779999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCh-hhhHHHHHHHHHHHHHHHhhccccccCCccc-----------------
Q 011750 338 CNTCLRVSSNSSRVVKELAKIIKTMKKSSTI-DLLVEEMNAAVKELKDDLKSLSLSEAGTSEN----------------- 399 (478)
Q Consensus 338 ~~~~~~l~~~~~~vL~~La~si~~m~~~~~~-~~~~~~l~~A~~~L~~~i~~~~~~~~~~~~~----------------- 399 (478)
+++|.+|+.++++++++++.+++.|+++++. +++...++.|.++||..|++.|.++.+..++
T Consensus 387 ~~~l~rva~e~~kvl~~~~~~~~~~~~~s~~~~~~~~~~~~A~~~L~~~ids~p~l~v~~~~~~~~~~~~~~~~~~~~~~ 466 (625)
T KOG4711|consen 387 RLTLRRVAIEISKVLRPFRAKVELMYKLSSALDILLQYVTVADRELQRNIDSNPTLLVNSESWISSNLQAARELLNEVNH 466 (625)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHHHHHhhccCcchHhhcccchhhhhHHHHHHHhhhhcc
Confidence 9999999999999999999999999999874 8899999999999999999998776543211
Q ss_pred -------cc-----------------------------------cc-------------------------------ccc
Q 011750 400 -------KR-----------------------------------TE-------------------------------KIS 406 (478)
Q Consensus 400 -------~~-----------------------------------~~-------------------------------~~~ 406 (478)
++ .+ +..
T Consensus 467 e~~~~~~~~~ek~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~~~s~~~~~~~~p~~ 546 (625)
T KOG4711|consen 467 EPNLKGTFPVEKYNELIHKLLSLGILLEVGTRFGNWDDAKLKETLRRLRKDSVSSVNAVSYISSNSIRSKNPIPRVVPIL 546 (625)
T ss_pred chhhcccccchhHHHHHHHhhcchhhhhccccccchhhHHHHHhhcccccchhhhhhhhhhhhhcccccCCCCccccccc
Confidence 00 00 000
Q ss_pred CC-CCccccccccchHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccccccc
Q 011750 407 SK-PAAAIPLMGMISMVSFAS-FQIEIASRIESIVEAVEELANLAEFEHPEKNKQNQANI 464 (478)
Q Consensus 407 ~~-~~~~~~~~~~~~~~t~~s-lLie~v~~~~~~~~~v~eL~~~a~Fk~~~~~~~~~~~~ 464 (478)
.+ ....+++.|++++++|+| +|+|+++|+++++++++||+++|+|+++|..+.+..+.
T Consensus 547 ~~~~~~~~~~se~l~~a~fas~ll~~~~arl~~vv~~~~el~~~a~f~~~~~~~~~~~~~ 606 (625)
T KOG4711|consen 547 SRATSKSYESSEALNLATFASNLLLEFVARLDNVVSAVEELSDKANFKEYDSCGEIGDIV 606 (625)
T ss_pred cccccccccCchhcCcccccchHHHHHHHHHhhhhhhhhhhhhhhhhccccccccccccc
Confidence 11 014578999999999999 99999999999999999999999999988776655443
No 3
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=99.96 E-value=2.2e-27 Score=263.63 Aligned_cols=316 Identities=13% Similarity=0.155 Sum_probs=200.7
Q ss_pred CCCcccHHHHHhhhhccccccccc--ccceeccCCCccccccccchhhhHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCc
Q 011750 15 VRKLTHIAYHLSKMACQKEVFNGV--EWKIRVADGSSETLVPEAGLASRLWLGVKNMIGGLVLKVWRFLEKAWDLGVDDP 92 (478)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 92 (478)
.+||.+|++|++++++........ +-+ ....+....+..|..+++.+. .|.
T Consensus 328 ~~nl~~i~~~l~~~~~~~~~~~~~~~~~~---------l~~~~~~~~~~~~~~l~~~l~------------------~~S 380 (701)
T TIGR01667 328 LDNLQSIDWQLARIARVLATAKPLYARDL---------LADKQPRGLKDILPRLKSHLT------------------PES 380 (701)
T ss_pred HHHHHHHHHHHHHhhcccccccccchhhh---------hcccCchhhHHHHHHHHHHcC------------------CCC
Confidence 358999999999998775331110 111 111222233455555544433 344
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhhccCCCchHHHHHhHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011750 93 RKVIHCLKVGIALTVVSLFYYTRPLYEGVGGNAMWAIMTVVVVFENTVGATIAKCLNRVFGTLLAGFLALGVHWIASQSG 172 (478)
Q Consensus 93 rr~~~AlKv~lA~~L~sll~~~~~~~~~l~~~g~WAvlTvvvV~qpsvGaTl~kg~~RilGTliG~~lgl~~~~l~~~~G 172 (478)
..++||+|++++++++.+++.. .+++ +|||+++|+++|++|+.|+|..|+++|++||++|+++|+++.++.+.
T Consensus 381 ~~fRhAlR~ala~~~a~~i~~~----l~l~-~gyWi~lTv~~V~qP~~~~T~~R~~~Ri~GTl~G~llg~~l~~l~p~-- 453 (701)
T TIGR01667 381 PLFRHAVRLSLVVMLGYAILMG----TALH-LGYWILLTTLFVCQPNYGATRLRLVQRIIGTVVGLVIGVALHFLIPS-- 453 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----hCCC-cchHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--
Confidence 4589999999999997776543 2454 99999999999999999999999999999999999999998877651
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011750 173 EKLEPLIAGASLFLLASAATFSRFIPTFKARFDYGALIFILTFSLVTVSGYRVDKLFNMAHQRISTIVIGTSLCILVSML 252 (478)
Q Consensus 173 ~~~~p~ll~~~vfl~~~~a~~~~~~p~~k~~y~yg~~if~lT~~LV~l~~~~~~~~~~~A~~Rl~~I~IGi~iAllVs~~ 252 (478)
....+.+ +.++++++.+ + .+.+|++.++++|..+++.......+.+++++.|++||+|||++|++++.+
T Consensus 454 ---~~~~l~l-~v~~~~~~~~---~----~~~~Y~~a~~fiT~~vll~~~l~~~~~~~~a~~Rl~DTliG~~iA~~~~~l 522 (701)
T TIGR01667 454 ---LEGQLTL-MVITGVAFFA---F----RSKNYGWATVFITLLVLLCFNLLGLDGEQYILPRLIDTLIGCLIAWGAVSY 522 (701)
T ss_pred ---HHHHHHH-HHHHHHHHHH---H----HHhhHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 1122221111 1 124577777888876555443333345788999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHH
Q 011750 253 IRPIWAGKDLYNLIIRNMDKLANSIDGLANFARWEPAHGRFNFRHPWKQYLKVGAAVRRCAYCIEALNACINSENQAPEF 332 (478)
Q Consensus 253 i~P~~A~~~L~~~la~~l~~la~~le~L~~~a~~Ep~~g~~~~~~p~~~y~ki~~~lR~~a~~i~aL~~~l~~~~q~p~~ 332 (478)
+||.|+++++++.+++.++..++|++.+++... .|+- .+ ..|.. .-|+......++...+....+.|+.
T Consensus 523 lwP~w~~~~l~~~~~~al~a~~~yl~~il~~~~----~~~~---~~-~~yr~---aRr~a~~a~a~l~~~~~~m~~EP~~ 591 (701)
T TIGR01667 523 LWPDWQSRLLRKMLHDALEANQRYLRLILSQYP----QGKP---DD-LAYRI---ARRNAHNTDAALSTTLSNMMQEPAF 591 (701)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCCC---ch-hHHHH---HHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999998765421 1110 01 12322 2233333455577777777778887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CChhhhHHHHHHHHHHHHHHHhhc
Q 011750 333 IKKLLCNTCLRVSSNSSRVVKELAKIIKTMKKS-STIDLLVEEMNAAVKELKDDLKSL 389 (478)
Q Consensus 333 lr~~l~~~~~~l~~~~~~vL~~La~si~~m~~~-~~~~~~~~~l~~A~~~L~~~i~~~ 389 (478)
.++...+...-++ ..+.|-...+++...+.. .+.++ .+.+.++.+.+...++..
T Consensus 592 ~~~~~~~~~~ll~--~~~~ll~~isal~a~r~~~~~~~~-~~~~~~~~~~~~~~l~~~ 646 (701)
T TIGR01667 592 NSHYLEDGFRLLT--LSHTLLSYISALGAHRERLLNPEL-AAELLQACEIVAKAIQRC 646 (701)
T ss_pred chhhHHHHHHHHH--HHHHHHHHHHHHHhcccccCChhH-HHHHHHHHHHHHHHHHHH
Confidence 6665544433222 222233333333322221 22333 345666666666665543
No 4
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=99.96 E-value=2e-26 Score=255.52 Aligned_cols=315 Identities=15% Similarity=0.177 Sum_probs=205.1
Q ss_pred CCCcccHHHHHhhhhcccccccccccceeccCCCccccccccchhhhHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCchh
Q 011750 15 VRKLTHIAYHLSKMACQKEVFNGVEWKIRVADGSSETLVPEAGLASRLWLGVKNMIGGLVLKVWRFLEKAWDLGVDDPRK 94 (478)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rr 94 (478)
.+||.+|+.|+.+++++...... +-+ + ...+....+..|..+++.+ ..|...
T Consensus 329 ~~nL~~i~~~L~~~~~~~~~~~~-~~~--l-------~~~~~~~~~~~~~~l~~~l------------------~~~S~~ 380 (704)
T TIGR01666 329 LNNLQSINWQLRQLAQDTTVTEQ-LAQ--L-------HDEQIHGLKNIWARIFSHF------------------TFESPL 380 (704)
T ss_pred HHHHHHHHHHHHHhhcccccccc-hhh--h-------cccCccchhHHHHHHHHhC------------------CCCcHH
Confidence 57899999999999877533211 112 1 1112223455665554443 345555
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccCCCchHHHHHhHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 011750 95 VIHCLKVGIALTVVSLFYYTRPLYEGVGGNAMWAIMTVVVVFENTVGATIAKCLNRVFGTLLAGFLALGVHWIASQSGEK 174 (478)
Q Consensus 95 ~~~AlKv~lA~~L~sll~~~~~~~~~l~~~g~WAvlTvvvV~qpsvGaTl~kg~~RilGTliG~~lgl~~~~l~~~~G~~ 174 (478)
++||+|++++++++.+++.. .+++ +|||+++|+++|++|++|+|..|+.+|++||++|+++|+++.++.+.
T Consensus 381 fRhAlRlalal~~a~~i~~~----l~l~-~gyWi~LTv~~V~qP~~~~T~~R~~~Ri~GTllG~~lg~~ll~l~p~---- 451 (704)
T TIGR01666 381 FRHAVRLSIVLFLGYAIIQF----FGFN-LGYWILLTTLFVCQPNYSATKVRLRQRIIGTLLGVVIGSPLLYFNPS---- 451 (704)
T ss_pred HHHHHHHHHHHHHHHHHHHH----hCCC-CCchHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----
Confidence 89999999999998776543 2454 99999999999999999999999999999999999999999887762
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011750 175 LEPLIAGASLFLLASAATFSRFIPTFKARFDYGALIFILTFSLVTVSGYRVDKLFNMAHQRISTIVIGTSLCILVSMLIR 254 (478)
Q Consensus 175 ~~p~ll~~~vfl~~~~a~~~~~~p~~k~~y~yg~~if~lT~~LV~l~~~~~~~~~~~A~~Rl~~I~IGi~iAllVs~~i~ 254 (478)
....+. .+.+++.+ |+.+. +.+|+..++++|..+++...... +.+++++.|+++|+||+++|+++++++|
T Consensus 452 -~~~~l~-liv~~~~l--~~~~~-----~~~Y~~a~~fiT~~vll~~~l~g-~~~~~~~~Rl~dTlIG~~iAl~a~~li~ 521 (704)
T TIGR01666 452 -LELQLV-LVVLTGVL--FFAFR-----SNNYSFATFFITLLVLLCFNVLG-EGAAVLLPRLLDTLIGCAIAWAAVSYIW 521 (704)
T ss_pred -HHHHHH-HHHHHHHH--HHHHH-----HHhHHHHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 111111 11111211 11111 23566556678876665443322 4578899999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccCCchHHHHHHHHHHHHHHHH-HHHHHHHHhhhcCCCHHH
Q 011750 255 PIWAGKDLYNLIIRNMDKLANSIDGLANFARWEPAHGRFNFRHPWKQYLKVGAAVRRCAYC-IEALNACINSENQAPEFI 333 (478)
Q Consensus 255 P~~A~~~L~~~la~~l~~la~~le~L~~~a~~Ep~~g~~~~~~p~~~y~ki~~~lR~~a~~-i~aL~~~l~~~~q~p~~l 333 (478)
|.|+++++++.+++.++..++|++...+.... |+-. + ..| +..|+.++. ..+|...+.+..++|+..
T Consensus 522 P~w~~~~l~~~~~~al~a~~~Yl~~vl~~~~~----g~~~-~---~~y----r~aRR~a~~~~a~l~~~~~~m~~EP~~~ 589 (704)
T TIGR01666 522 PDWQYLQLDKVSHQALRANAVYLLHIISQYQF----GKSD-D---LKY----RIARRNAHNYDAALSTTVSNMNNEPVKY 589 (704)
T ss_pred cchHHhHHHHHHHHHHHHHHHHHHHHHHHhcc----CCcc-h---hHH----HHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 99999999999999999999999886654321 2110 0 122 234555544 455777888888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCChhhhHHHHHHHHHHHHHHHhhccc
Q 011750 334 KKLLCNTCLRVSSNSSRVVKELAKIIKTM-KKSSTIDLLVEEMNAAVKELKDDLKSLSL 391 (478)
Q Consensus 334 r~~l~~~~~~l~~~~~~vL~~La~si~~m-~~~~~~~~~~~~l~~A~~~L~~~i~~~~~ 391 (478)
|+...+.. ++-...-..+..++. +-.. ++..+.++ ..-++++.+.+...++....
T Consensus 590 ~~~~~~~~-~ll~~~~~llsyisa-Lg~~r~~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 645 (704)
T TIGR01666 590 KAYLQKGF-RLLKLNHSLLSYISA-LGAHRDRLKNLQQ-TAQFLDGFYPVAKKLIYTLE 645 (704)
T ss_pred hhhHHHHH-HHHHHHHHHHHHHHH-HHhCHhhCCChHH-HHHHHHHHHHHHHHHHHHhh
Confidence 76554432 222222222222222 2211 12223334 35677888888888776543
No 5
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=99.94 E-value=3.6e-24 Score=236.60 Aligned_cols=172 Identities=23% Similarity=0.366 Sum_probs=141.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhccCCCchHHHHHhHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 011750 94 KVIHCLKVGIALTVVSLFYYTRPLYEGVGGNAMWAIMTVVVVFENTVGATIAKCLNRVFGTLLAGFLALGVHWIASQSGE 173 (478)
Q Consensus 94 r~~~AlKv~lA~~L~sll~~~~~~~~~l~~~g~WAvlTvvvV~qpsvGaTl~kg~~RilGTliG~~lgl~~~~l~~~~G~ 173 (478)
+++|++|+++|++++.+++ .+.+++ +|+||++||++|+||+.|.++.||++|++||++|+++|+++..++. +
T Consensus 1 ~~~~alr~~lA~~lAl~ia----~~l~l~-~p~WA~~tv~iV~qp~~G~~~~k~~~R~~GT~iGa~~~~~lv~~~~---~ 72 (650)
T PF04632_consen 1 RLRFALRTALAAMLALYIA----FWLQLP-HPYWAAMTVFIVSQPSSGASLSKGLYRLIGTLIGAAAGLLLVALFP---Q 72 (650)
T ss_pred CHHHHHHHHHHHHHHHHHH----HHhCCC-CcHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---c
Confidence 3789999999999965554 455675 9999999999999999999999999999999999999999986655 2
Q ss_pred chhHHHH--HHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHccCCc-hhHHHHHHHHHHHHHHHHHHHHHHH
Q 011750 174 KLEPLIA--GASLFLLASAATFSRFIPTFKARFDYGALIFILTFSLVTVSGYRV-DKLFNMAHQRISTIVIGTSLCILVS 250 (478)
Q Consensus 174 ~~~p~ll--~~~vfl~~~~a~~~~~~p~~k~~y~yg~~if~lT~~LV~l~~~~~-~~~~~~A~~Rl~~I~IGi~iAllVs 250 (478)
+|.+. ++++|+ +.|. |...+ .+..+.|+++++++|.++|.+.+..+ ++.++++++|+.+|+||++++++|+
T Consensus 73 --~p~l~~~~lal~i-~~c~-~~~~~--~~~~~~y~~~lag~T~~iv~~~~~~~p~~~f~~a~~R~~ei~iGi~~a~~v~ 146 (650)
T PF04632_consen 73 --SPLLFLLALALWI-GLCL-YLSLL--DRNFRSYAFMLAGYTAAIVALPAVGNPEQVFDLALWRVLEILIGILCATLVS 146 (650)
T ss_pred --CHHHHHHHHHHHH-HHHH-HHHHh--cCCcchHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 333333 2222 32221 12356899999999999999887654 5789999999999999999999999
Q ss_pred hhcccccchHHHHHHHHHHHHHHHHHHHH
Q 011750 251 MLIRPIWAGKDLYNLIIRNMDKLANSIDG 279 (478)
Q Consensus 251 ~~i~P~~A~~~L~~~la~~l~~la~~le~ 279 (478)
.++||.++++.+++.+.+.++..++.+..
T Consensus 147 ~l~~P~~~~~~l~~~l~~~l~~~~~~~~~ 175 (650)
T PF04632_consen 147 MLFFPQRARRQLRRRLAQRLADLARWLAA 175 (650)
T ss_pred HHhCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888876
No 6
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=99.91 E-value=2.8e-22 Score=220.04 Aligned_cols=178 Identities=16% Similarity=0.167 Sum_probs=143.3
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhccCCCchHHHHHhHHhc---------ccChhHHHHHHHHHHHHHHHHH
Q 011750 88 GVDDPRKVIHCLKVGIALTVVSLFYYTRPLYEGVGGNAMWAIMTVVVVF---------ENTVGATIAKCLNRVFGTLLAG 158 (478)
Q Consensus 88 ~~~d~rr~~~AlKv~lA~~L~sll~~~~~~~~~l~~~g~WAvlTvvvV~---------qpsvGaTl~kg~~RilGTliG~ 158 (478)
..+++++++|++|+++|++++-.+ .++.+++ +|+||++||++|+ ||..|+++.|+++|++||++|+
T Consensus 2 ~~p~~~~~~falk~~lA~~LAL~i----a~~l~L~-~P~WA~~Tv~iv~~~~~~~~g~qp~~G~v~~K~~~Ri~GTliGa 76 (652)
T PRK10631 2 FSIANQRLRFAVKLAFAIVLALFV----GFHFQLE-TPRWAVLTAAIVAAGPAFAAGGEPFSGAIRYRGMLRIIGTFIGC 76 (652)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHH----HHHCCCC-CccHHHHHHHHHHcccccccccCCccchHHHHHHHHHHHHHHHH
Confidence 356788899999999999995544 4455675 9999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCchhHHH--HHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHccCCc-hhHHHHHHHH
Q 011750 159 FLALGVHWIASQSGEKLEPLI--AGASLFLLASAATFSRFIPTFKARFDYGALIFILTFSLVTVSGYRV-DKLFNMAHQR 235 (478)
Q Consensus 159 ~lgl~~~~l~~~~G~~~~p~l--l~~~vfl~~~~a~~~~~~p~~k~~y~yg~~if~lT~~LV~l~~~~~-~~~~~~A~~R 235 (478)
+.|+++..++. + .|.+ +++++|+ |+|. |...+ .+.+++|++.++++|.++|.++...+ ..+|++|+.|
T Consensus 77 ~~~l~l~~~f~---~--~p~l~~l~l~lWi-g~c~-~~s~l--~r~~~sY~~~LaGyTa~iI~~~~~~~p~~~f~~A~~R 147 (652)
T PRK10631 77 IAALVIIIATI---R--APLLMILLCCIWA-GFCT-WISSL--VRVENSYAWGLAGYTALIIVITIQPEPLLTPQFAVER 147 (652)
T ss_pred HHHHHHHHHhc---C--ChHHHHHHHHHHH-HHHH-HHHHh--ccchhHHHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 99999986654 2 4444 3444443 3332 32211 23457899999999999999887654 5689999999
Q ss_pred HHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHH
Q 011750 236 ISTIVIGTSLCILVSMLIRPIWAGKDLYNLIIRNMDKLANSIDG 279 (478)
Q Consensus 236 l~~I~IGi~iAllVs~~i~P~~A~~~L~~~la~~l~~la~~le~ 279 (478)
+.+|+||++|+.+|+.+++|.+.+..++..+.+.+.+..++++.
T Consensus 148 ~~Ei~iGi~ca~lv~~l~~P~~~~~~l~~~l~~~~~~~~~~~~~ 191 (652)
T PRK10631 148 CSEIVIGIVCAILADLLFSPRSIKQEVDRELDSLLVAQYQLMQL 191 (652)
T ss_pred HHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988877776666544
No 7
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=99.88 E-value=7e-20 Score=200.52 Aligned_cols=182 Identities=18% Similarity=0.161 Sum_probs=137.9
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhccCCCchHHHHHhHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHH-
Q 011750 87 LGVDDPRKVIHCLKVGIALTVVSLFYYTRPLYEGVGGNAMWAIMTVVVVFENTVGATIAKCLNRVFGTLLAGFLALGVH- 165 (478)
Q Consensus 87 ~~~~d~rr~~~AlKv~lA~~L~sll~~~~~~~~~l~~~g~WAvlTvvvV~qpsvGaTl~kg~~RilGTliG~~lgl~~~- 165 (478)
-...||..++||+|+.+|++++.+++.. .+++ +|+|+++|+++|++|+.|.|.+|+++|++||++|+++|+++.
T Consensus 343 dA~tNp~~~R~ALRt~lAa~La~~i~~~----l~w~-~pyWamLTvvIVsqP~~GaT~sRa~~RiiGTliGallA~ll~v 417 (683)
T PRK11427 343 DAFTNPDYMRYALKTLLACLICYTFYSG----VDWE-GIHTCMLTCVIVANPNVGSSYQKMVLRFGGAFCGAILALLFTL 417 (683)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHH----cCCC-ccHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888999999999999998766543 3464 999999999999999999999999999999999999999887
Q ss_pred HHHhhcCCchhHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHH
Q 011750 166 WIASQSGEKLEPLIAGASLFLLASAATFSRFIPTFKARFDYGALIFILTFSLVTVSGY-RVDKLFNMAHQRISTIVIGTS 244 (478)
Q Consensus 166 ~l~~~~G~~~~p~ll~~~vfl~~~~a~~~~~~p~~k~~y~yg~~if~lT~~LV~l~~~-~~~~~~~~A~~Rl~~I~IGi~ 244 (478)
++.+.... .+.++. .++.+.++..+.. ....|++|+++.+++|+.++.+... ........+.+|+++|++|++
T Consensus 418 ~l~P~l~~--~~~Lll-lllp~~llg~wv~---~~~~R~sYa~~~ag~T~~li~L~~l~~p~~d~~~i~dRvl~tLLGi~ 491 (683)
T PRK11427 418 LVMPWLDN--IVELLF-VLAPIFLLGAWIA---TSSERSSYIGTQMVVTFALATLENVFGPVYDLVEIRDRALGILIGTV 491 (683)
T ss_pred Hhcccccc--HHHHHH-HHHHHHHHHHHHH---HhcccHHHHHHHHHHHHHHHHhhcccCcccchHHHHHHHHHHHHHHH
Confidence 44443332 222221 1221111111111 1124678999999999988876332 222223456789999999999
Q ss_pred HHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHH
Q 011750 245 LCILVSMLIRPIWAGKDLYNLIIRNMDKLANSIDG 279 (478)
Q Consensus 245 iAllVs~~i~P~~A~~~L~~~la~~l~~la~~le~ 279 (478)
++.+++.++||.|.++.+++.+.+.++.++++++.
T Consensus 492 iA~la~~lVwP~~~~~~L~~~l~~aLr~la~~l~~ 526 (683)
T PRK11427 492 VSAVIYTFVWPESEARTLPQKLAGALGMLSKVLRI 526 (683)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999998764
No 8
>COG1289 Predicted membrane protein [Function unknown]
Probab=99.74 E-value=4e-16 Score=174.16 Aligned_cols=183 Identities=20% Similarity=0.296 Sum_probs=138.8
Q ss_pred HHhhcCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhccCCCchHHHHHhHHhcccC-hhHHHHHHHHHHHHHHHHHHHHH
Q 011750 84 AWDLGVDDPRKVIHCLKVGIALTVVSLFYYTRPLYEGVGGNAMWAIMTVVVVFENT-VGATIAKCLNRVFGTLLAGFLAL 162 (478)
Q Consensus 84 ~~~~~~~d~rr~~~AlKv~lA~~L~sll~~~~~~~~~l~~~g~WAvlTvvvV~qps-vGaTl~kg~~RilGTliG~~lgl 162 (478)
+....++++..++||+|+++++++++.+... .+++ +|+|+++|+++||+|+ +|+|..++.+|++||++|+++|+
T Consensus 344 ~~~~~~~~~~alr~a~R~ala~~~~~~~~~~----~~w~-~g~w~llt~~vV~~~~~~~~t~~r~~~ri~GTllg~~~g~ 418 (674)
T COG1289 344 ALAHHRLNSPALRHALRTALALLLGYAFWLA----LGWP-HGYWILLTAAVVCQPNAYGATRQRARQRILGTLLGLLLGL 418 (674)
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH----hcCC-ccHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3445678888999999999999998776543 3565 9999999999999999 99999999999999999999999
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHH
Q 011750 163 GVHWIASQSGEKLEPLIAGASLFLLASAATFSRFIPTFKARFDYGALIFILTFSLVTVSGYRVDKLFNMAHQRISTIVIG 242 (478)
Q Consensus 163 ~~~~l~~~~G~~~~p~ll~~~vfl~~~~a~~~~~~p~~k~~y~yg~~if~lT~~LV~l~~~~~~~~~~~A~~Rl~~I~IG 242 (478)
++.++.....+ +.+.++.+..+++++ +++ . .+|.|+. +++|+.+.+..+....+...+...|++++++|
T Consensus 419 ~~l~~~~p~~~-~~l~~l~~~~~l~~~---~~~----~-~~~~~a~--~~i~l~v~~~~~l~~~~~~~~~~~r~~d~~iG 487 (674)
T COG1289 419 LVLLLLLPLIP-GLLLLLLLAALLFAA---GIR----L-AKYRLAT--LGITLLVLFLVGLLGSNGPDYDLPRFLDTLLG 487 (674)
T ss_pred HHHHHhcccch-hHHHHHHHHHHHHHH---HHH----h-cchhHHH--HHHHHHHHHHHHHcccchhhhhHHHHHHHHHH
Confidence 99876653222 112222222222111 111 1 2456654 45555555554434446677889999999999
Q ss_pred HHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 011750 243 TSLCILVSMLIRPIWAGKDLYNLIIRNMDKLANSIDGLAN 282 (478)
Q Consensus 243 i~iAllVs~~i~P~~A~~~L~~~la~~l~~la~~le~L~~ 282 (478)
+++++++..++||.|....+++..++.++...++++.+.+
T Consensus 488 ~lIa~~~a~~v~~~~~~~~l~~~~~~~l~~~~~~l~~~~~ 527 (674)
T COG1289 488 SLIALALAFLVWPLWRPRRLRRALRRALRALRRDLASALS 527 (674)
T ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999887554
No 9
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=99.64 E-value=5.5e-14 Score=154.51 Aligned_cols=172 Identities=13% Similarity=0.028 Sum_probs=127.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhhhhhhhccCCCchHHHHHhHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011750 90 DDPRKVIHCLKVGIALTVVSLFYYTRPLYEGVGGNAMWAIMTVVVVFENTVGATIAKCLNRVFGTLLAGFLALGVHWIAS 169 (478)
Q Consensus 90 ~d~rr~~~AlKv~lA~~L~sll~~~~~~~~~l~~~g~WAvlTvvvV~qpsvGaTl~kg~~RilGTliG~~lgl~~~~l~~ 169 (478)
..|.|.-..+|+.++.+|+-.+.+ ..+++ +++|+..|+++|.||..|.|..|++.|++||++|+++++++.-...
T Consensus 25 ~~P~r~~~~~r~~~a~~L~l~i~~----~l~~P-~~a~a~~~vfivsqp~~g~t~~kai~r~vgt~lg~~~~vll~~~~v 99 (683)
T PRK11427 25 RRPGRVPQTLQLWVGCLLVILISM----TFEIP-FLALSLAVLFYGIQSNAFYTKFVAILFVVATVLEIGSLFLIYKWSY 99 (683)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHH----HcCCC-HHHHHHHHHHheeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445566667999998888554433 33465 8999999999999999999999999999999999999998864433
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHH--HHccCCchhHHHHHHHHHHH-----HHHH
Q 011750 170 QSGEKLEPLIAGASLFLLASAATFSRFIPTFKARFDYGALIFILTFSLV--TVSGYRVDKLFNMAHQRIST-----IVIG 242 (478)
Q Consensus 170 ~~G~~~~p~ll~~~vfl~~~~a~~~~~~p~~k~~y~yg~~if~lT~~LV--~l~~~~~~~~~~~A~~Rl~~-----I~IG 242 (478)
..|.+..+++-+..+++.|+ .. -+|.+|.+++.++| .++ .+.+..+ .-+ ...|..+ |.+|
T Consensus 100 -----~~P~l~~l~ialw~~~~lyl---~r-~~rl~yvf~lag~t-aii~~~f~~v~~--~~E-~~~R~~e~~w~~i~~g 166 (683)
T PRK11427 100 -----GYPLIRLIIAGPILMGCMFL---MR-THRLGLVFFAVAIV-AIYGQTFPAMLD--YPE-VVVRLTLWCIVVGLYP 166 (683)
T ss_pred -----cchHHHHHHHHHHHHHHHHH---hh-ccchhHHHHHHHHH-HHHHhhcccccc--hHH-HHHHHHHHHHHHHHHH
Confidence 24655433332222222233 22 23579999999999 455 3333333 122 3788888 9999
Q ss_pred HHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHH
Q 011750 243 TSLCILVSMLIRPIWAGKDLYNLIIRNMDKLANSIDG 279 (478)
Q Consensus 243 i~iAllVs~~i~P~~A~~~L~~~la~~l~~la~~le~ 279 (478)
++|+++|+.++||.+.+..++..+...+++....+..
T Consensus 167 i~ca~lV~~l~~P~~~~~~l~~~l~~~l~~a~~~l~~ 203 (683)
T PRK11427 167 TLLMTLIGVLWFPSRAINQMHQALNDRLDDAISHLTD 203 (683)
T ss_pred HHHHHHHHhHhCcCChHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999988887766644
No 10
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=99.63 E-value=4.4e-15 Score=130.72 Aligned_cols=114 Identities=25% Similarity=0.389 Sum_probs=87.4
Q ss_pred CCchHHHHHhHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHhhhhhccc
Q 011750 123 GNAMWAIMTVVVVFENTVGATIAKCLNRVFGTLLAGFLALGVHWIASQSGEKLEPLIAGASLFLLASAATFSRFIPTFKA 202 (478)
Q Consensus 123 ~~g~WAvlTvvvV~qpsvGaTl~kg~~RilGTliG~~lgl~~~~l~~~~G~~~~p~ll~~~vfl~~~~a~~~~~~p~~k~ 202 (478)
+|++|+.+|+++|++|+.|++..|+.+|++||++|+++|+++..+.+ .+ +.+.+.++++.++..+. +
T Consensus 12 ~~~~W~~it~~~v~~~~~~~~~~~~~~Ri~Gt~iG~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~------~- 78 (128)
T PF13515_consen 12 PHGYWAPITVVSVLSPSYGATVNRAIQRILGTLIGVVLGLLLLYLFP-----GN-YVLILIVFLLMFLIFYF------L- 78 (128)
T ss_pred CchHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CH-HHHHHHHHHHHHHHHHH------H-
Confidence 49999999999999999999999999999999999999999987766 12 33333333333322222 1
Q ss_pred chhHHHHHHHHHHHHHHHccC---CchhHHHHHHHHHHHHHHHHHHHHHH
Q 011750 203 RFDYGALIFILTFSLVTVSGY---RVDKLFNMAHQRISTIVIGTSLCILV 249 (478)
Q Consensus 203 ~y~yg~~if~lT~~LV~l~~~---~~~~~~~~A~~Rl~~I~IGi~iAllV 249 (478)
.++|+...+.+|+.++++.++ ++.+.++.+..|+.++++|+++++++
T Consensus 79 ~~~y~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~R~~~v~iG~~i~~~v 128 (128)
T PF13515_consen 79 SKNYAIAQIFITVMVVLLFSLIHPGNGDPWQLALERILDVLIGILIALLV 128 (128)
T ss_pred hccHHHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHhC
Confidence 245666777888887777665 24567889999999999999999864
No 11
>COG4129 Predicted membrane protein [Function unknown]
Probab=99.56 E-value=6.9e-12 Score=128.49 Aligned_cols=161 Identities=18% Similarity=0.292 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccCCCchHHHHHhHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCch
Q 011750 96 IHCLKVGIALTVVSLFYYTRPLYEGVGGNAMWAIMTVVVVFENTVGATIAKCLNRVFGTLLAGFLALGVHWIASQSGEKL 175 (478)
Q Consensus 96 ~~AlKv~lA~~L~sll~~~~~~~~~l~~~g~WAvlTvvvV~qpsvGaTl~kg~~RilGTliG~~lgl~~~~l~~~~G~~~ 175 (478)
...+|+|+|++|+.+++.+ .+++ .+..|++|++++++||...++.++++|++|+++|+++|.++.++. | .
T Consensus 11 ~RtlKt~ia~~La~~ia~~----l~~~-~~~~A~i~AV~~l~~t~~~s~~~~~~r~~g~~iG~~~a~l~~~l~---g--~ 80 (332)
T COG4129 11 ARTLKTGLAAGLALLIAHL----LGLP-QPAFAGISAVLCLSPTIKRSLKRALQRLLGNALGAILAVLFFLLF---G--Q 80 (332)
T ss_pred HHHHHHHHHHHHHHHHHHH----hCCC-chHHHHHHHhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHc---C--c
Confidence 4679999999998776543 3454 788999999999999999999999999999999999999997654 4 3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 011750 176 EPLIAGASLFLLASAATFSRFIPTFKARFDYGALIFILTFSLVTVSGYRVDKLFNMAHQRISTIVIGTSLCILVSMLIRP 255 (478)
Q Consensus 176 ~p~ll~~~vfl~~~~a~~~~~~p~~k~~y~yg~~if~lT~~LV~l~~~~~~~~~~~A~~Rl~~I~IGi~iAllVs~~i~P 255 (478)
+|+..++.+.++..++..++. .-|.....+....++. +...+.++... |++++++|+++|++||.+++|
T Consensus 81 ~~~~~~v~~~i~i~~~~~~~~--------~~g~~~~~~~~~~ii~-~~~~~~~~~~~--r~l~~~vG~~~a~lvn~~~~~ 149 (332)
T COG4129 81 NPIAFGVVLLIIIPLLVLLKL--------ENGVVPITVGVLHILV-AAMIPLFLIFN--RFLLVFVGVGVAFLVNLVMPP 149 (332)
T ss_pred cHHHHHHHHHHHHHHHHHHhc--------ccchhHHHHHHHHHHH-HcccchhHHHH--HHHHHHHHHHHHHHHhhhcCC
Confidence 677777766665544443321 2222222222222222 22233333333 999999999999999999888
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHH
Q 011750 256 IWAGKDLYNLIIRNMDKLANSIDG 279 (478)
Q Consensus 256 ~~A~~~L~~~la~~l~~la~~le~ 279 (478)
+. .+++....+.....+..+..
T Consensus 150 ~~--~~~~~~~~kv~~~~~~il~~ 171 (332)
T COG4129 150 PD--YELKLYRAKVEAILASILWE 171 (332)
T ss_pred ch--HHHHHHHHHHHHHHHHHHHH
Confidence 87 44444444444444444333
No 12
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=99.52 E-value=4.4e-13 Score=121.76 Aligned_cols=136 Identities=26% Similarity=0.444 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhccCCCchHHHHHhHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchh
Q 011750 97 HCLKVGIALTVVSLFYYTRPLYEGVGGNAMWAIMTVVVVFENTVGATIAKCLNRVFGTLLAGFLALGVHWIASQSGEKLE 176 (478)
Q Consensus 97 ~AlKv~lA~~L~sll~~~~~~~~~l~~~g~WAvlTvvvV~qpsvGaTl~kg~~RilGTliG~~lgl~~~~l~~~~G~~~~ 176 (478)
..+|+++|++++.+++.+ .+. +++++|.+++++++|||...|++.+++|+.|+++|+++|+++..+. | .+
T Consensus 6 r~iKtaiA~~la~~ia~~----l~~-~~~~~A~i~Ail~~q~T~~~S~~~~~~Ri~~~~iG~~~a~~~~~~~---g--~~ 75 (141)
T PF06081_consen 6 RTIKTAIAAFLAILIAQL----LGL-QYPFFAPIAAILSMQPTVYRSLKQGLNRILGTLIGALLALLFFLIL---G--YN 75 (141)
T ss_pred HHHHHHHHHHHHHHHHHH----HCC-CchHHHHHHHhheeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---C--cc
Confidence 458999999997766543 244 3899999999999999999999999999999999999999987654 3 36
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011750 177 PLIAGASLFLLASAATFSRFIPTFKARFDYGALIFILTFSLVTVSGYRVDKLFNMAHQRISTIVIGTSLCILVSMLI 253 (478)
Q Consensus 177 p~ll~~~vfl~~~~a~~~~~~p~~k~~y~yg~~if~lT~~LV~l~~~~~~~~~~~A~~Rl~~I~IGi~iAllVs~~i 253 (478)
|+.+++.+++.......+ +...+.....+++..++.. .+++ +.++..|+.++++|++++++||+++
T Consensus 76 ~~~~~l~v~i~i~~~~~l--------~~~~~~~~a~v~~~~i~~~--~~~~-~~~~~~r~l~t~iG~~va~lVN~~~ 141 (141)
T PF06081_consen 76 PLSIGLAVIITIPICNWL--------KLGEGIIVAAVTFVHILLS--GSDS-FSYALNRVLLTLIGIGVALLVNLLM 141 (141)
T ss_pred HHHHHHHHHHHHHHHHHh--------CCCCeehHHHHHHHHHHHc--CCcc-HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 777766555433222222 2233333444454444433 2333 3449999999999999999999864
No 13
>COG1289 Predicted membrane protein [Function unknown]
Probab=99.47 E-value=1.8e-11 Score=137.00 Aligned_cols=168 Identities=20% Similarity=0.220 Sum_probs=127.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhhccCCCchHHHHHhHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011750 93 RKVIHCLKVGIALTVVSLFYYTRPLYEGVGGNAMWAIMTVVVVFENTVGATIAKCLNRVFGTLLAGFLALGVHWIASQSG 172 (478)
Q Consensus 93 rr~~~AlKv~lA~~L~sll~~~~~~~~~l~~~g~WAvlTvvvV~qpsvGaTl~kg~~RilGTliG~~lgl~~~~l~~~~G 172 (478)
..++|++|+.+|++++.++.|. .+.+ ++.|+++|+.+|++|..|+.+.|++.|++||++|..+++++..+.. .
T Consensus 9 ~~~~~~lr~~~a~~la~~~~~~----~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~rli~tlig~~~~~~~~~~~~--~ 81 (674)
T COG1289 9 ADWRYALRTFLAACLALALAFL----LGLP-QPSWAVSTVAIVSAPDSGAVLSKGLKRLIGTLIGFAVALLLVALLA--Q 81 (674)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH----cCCC-CccHHHHHHHHHhCcCCCCHHHhhHHHHHHHHHHHHHHHHHHHHHc--c
Confidence 3489999999999997666554 3454 9999999999999999999999999999999999999998875443 2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHcc--CCc-hhHHHHHHHHHHHHHHHHHHHHHH
Q 011750 173 EKLEPLIAGASLFLLASAATFSRFIPTFKARFDYGALIFILTFSLVTVSG--YRV-DKLFNMAHQRISTIVIGTSLCILV 249 (478)
Q Consensus 173 ~~~~p~ll~~~vfl~~~~a~~~~~~p~~k~~y~yg~~if~lT~~LV~l~~--~~~-~~~~~~A~~Rl~~I~IGi~iAllV 249 (478)
+..++++++++|+ ++|..+...+. ....|++.++++|+.++. +. +.. ...+..+.+|+.++++|+.++-.+
T Consensus 82 -~p~~f~~~~~~~~-~l~~~~~~~~~---~~~~~a~~la~yT~~~~~-~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~ 155 (674)
T COG1289 82 -EPWLFLLLLTLWL-GLCTAIGSLYR---TIASYAFVLAGYTALIIG-PAPAIPEPELLFDGAVWRVVEILLGILCAPVV 155 (674)
T ss_pred -CcHHHHHHHHHHH-HHHHHHHHhhc---cHHHHHHHHHHHHHHHhc-cccccccHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2334444434333 44444444333 346899999999998888 32 222 347899999999999999999999
Q ss_pred HhhcccccchHHHHHHHHHHHHHH
Q 011750 250 SMLIRPIWAGKDLYNLIIRNMDKL 273 (478)
Q Consensus 250 s~~i~P~~A~~~L~~~la~~l~~l 273 (478)
....+|...+..|.+.+.......
T Consensus 156 ~~~~~~~~~~~~L~~~l~~~~~~~ 179 (674)
T COG1289 156 PLLESPSRLYQALANYLEAKSRLF 179 (674)
T ss_pred hHhhhHHHHHHHHHHHHHHHHhcc
Confidence 998899888888777665544443
No 14
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=99.22 E-value=1.9e-08 Score=111.67 Aligned_cols=178 Identities=23% Similarity=0.235 Sum_probs=130.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhhhhhhhccCCCchHHHHHhHHhc--ccChhHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 011750 90 DDPRKVIHCLKVGIALTVVSLFYYTRPLYEGVGGNAMWAIMTVVVVF--ENTVGATIAKCLNRVFGTLLAGFLALGVHW- 166 (478)
Q Consensus 90 ~d~rr~~~AlKv~lA~~L~sll~~~~~~~~~l~~~g~WAvlTvvvV~--qpsvGaTl~kg~~RilGTliG~~lgl~~~~- 166 (478)
|++..+++++|+++++.+++++... .+++ .|.-+++++.+++ -.+.++...+...++.|+++|+++|+++.+
T Consensus 335 d~~~A~~~alra~la~~~~~l~Wi~----t~W~-~G~~~~~~~~v~~~lfa~~~~P~~~~~~~~~G~l~~~~~a~~~~~~ 409 (650)
T PF04632_consen 335 DWPLALRNALRAFLAILIAGLFWIA----TGWP-SGATAVMMAAVVSSLFATLDNPAPALRLFLIGALLGAVLAFLYLFF 409 (650)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH----cCCC-hhHHHHHHHHHHHHHHcCCcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566689999999999998877543 3565 6777777777776 678889999999999999999999998854
Q ss_pred HHhhcCCchhHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHH
Q 011750 167 IASQSGEKLEPLIAGASLFLLASAATFSRFIPTFKARFDYGALIFILTFSLVTVSGYRVDKLFNMAHQRISTIVIGTSLC 246 (478)
Q Consensus 167 l~~~~G~~~~p~ll~~~vfl~~~~a~~~~~~p~~k~~y~yg~~if~lT~~LV~l~~~~~~~~~~~A~~Rl~~I~IGi~iA 246 (478)
+.|+..+ +..+.+.+..+++ +..+. .-++++.|.++-+.+.|.+.+..++....-+....++.+.+++|++++
T Consensus 410 vlP~~~~-f~~L~l~l~~~l~--~~~~~----~~~p~~~~~g~~~~v~f~~~~~~~n~~~~d~~~f~n~~la~l~G~~~a 482 (650)
T PF04632_consen 410 VLPHLDG-FPLLALVLAPFLF--LGGLL----MARPRTAYIGLGFAVFFLLLLGPGNPYSYDFATFLNRALAILLGIVIA 482 (650)
T ss_pred hhhccCc-HHHHHHHHHHHHH--HHHHH----HcCchHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5554443 3333333333322 22222 224567777777777776666555554444666799999999999999
Q ss_pred HHHHhhcccccchHHHHHHHHHHHHHHHHHHHH
Q 011750 247 ILVSMLIRPIWAGKDLYNLIIRNMDKLANSIDG 279 (478)
Q Consensus 247 llVs~~i~P~~A~~~L~~~la~~l~~la~~le~ 279 (478)
.++..+++|.......++.+.+..+++++....
T Consensus 483 ~l~~~li~p~~~~~~~rrl~~~~~~~l~~~~~~ 515 (650)
T PF04632_consen 483 ALVFRLIRPFSPEWRRRRLLRALRRDLARLARG 515 (650)
T ss_pred HHHHHHHCCCChhHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999998888888776543
No 15
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=98.94 E-value=1e-06 Score=94.72 Aligned_cols=242 Identities=17% Similarity=0.203 Sum_probs=147.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhhhhhhhccCCCchHHHHHhHHh-cccChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011750 90 DDPRKVIHCLKVGIALTVVSLFYYTRPLYEGVGGNAMWAIMTVVVV-FENTVGATIAKCLNRVFGTLLAGFLALGVHWIA 168 (478)
Q Consensus 90 ~d~rr~~~AlKv~lA~~L~sll~~~~~~~~~l~~~g~WAvlTvvvV-~qpsvGaTl~kg~~RilGTliG~~lgl~~~~l~ 168 (478)
-|.+.++--+|.+++..++.++++..+....++..+|.+.|..+++ ..-.+|..+...+.=++|+++|.++|++..+++
T Consensus 11 ld~~~~k~~~k~~i~~~i~~~l~~i~~~~~~~g~~~yl~~i~~~~~~p~~~~~~~~~~~~~~~~g~~~g~~~~~l~~~~a 90 (459)
T PF10337_consen 11 LDRRSLKIMFKCWIAPWIALILCQIPPVARWLGTAGYLAPIISVIVPPGRPRGKFLEAMILLLLGVCLGWAWGLLAMYIA 90 (459)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhchHHHHHhcchhHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777788899999999999888888777666777899888877666 345789999999999999999999999888776
Q ss_pred hhcCCc-------------------hhH-------------------HHHHHHHHHHHHHHHHHhhhhhcccchhHHHHH
Q 011750 169 SQSGEK-------------------LEP-------------------LIAGASLFLLASAATFSRFIPTFKARFDYGALI 210 (478)
Q Consensus 169 ~~~G~~-------------------~~p-------------------~ll~~~vfl~~~~a~~~~~~p~~k~~y~yg~~i 210 (478)
...-+. .++ .+.++.+|+..++..++|.. .+++..+.++
T Consensus 91 ~~aR~~~t~a~l~~~~~~~~~~~s~~~~~~~~~~~i~~G~~~~a~~saV~av~l~~~i~~~~~lRa~---~p~~~~~~I~ 167 (459)
T PF10337_consen 91 VAARPHDTQARLQQLQQSAGACTSGPNPAACAQQLIFDGFFYDARASAVFAVFLFVFIYFHGWLRAK---NPKLNFPVIF 167 (459)
T ss_pred HHHccCccHHHHHHHHHHhccccCCCChhHHHHHhhcccceecchHHHHHHHHHHHHHHHHHHHHHh---CcchHHHHHH
Confidence 533210 011 22233333333333333322 1223444333
Q ss_pred HHHHHHHHHHccCCch--hHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 011750 211 FILTFSLVTVSGYRVD--KLFNMAHQRISTIVIGTSLCILVSMLIRPIWAGKDLYNLIIRNMDKLANSIDGLANFARWEP 288 (478)
Q Consensus 211 f~lT~~LV~l~~~~~~--~~~~~A~~Rl~~I~IGi~iAllVs~~i~P~~A~~~L~~~la~~l~~la~~le~L~~~a~~Ep 288 (478)
+.+-..+.+.++...+ ....++..=+.-.++|+++++++|++|||...+..+-+.+.+.+..+...++.-.++-.-.+
T Consensus 168 ~~I~~~i~~t~g~~~p~~~~~~l~~~ll~P~~ig~ai~~~vslliFP~sss~~~~~~~~~~l~~l~~~l~~~~~~l~~~~ 247 (459)
T PF10337_consen 168 GSIFVDIFLTYGPLFPTFFAYTLGKTLLKPFLIGIAIALVVSLLIFPESSSHVVLKSMEDYLRLLKKALDAQRNFLQSSE 247 (459)
T ss_pred HHHHHHHHHHhCcCcCcchHHHHHHHHHHHHHHHHHHHHHHheeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3333333333332222 23344333445589999999999999999999999999998888888887776443322111
Q ss_pred CCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcC----CCHHHHH
Q 011750 289 AHGRFNFRHPWKQYLKVGAAVRRCAYCIEALNACINSENQ----APEFIKK 335 (478)
Q Consensus 289 ~~g~~~~~~p~~~y~ki~~~lR~~a~~i~aL~~~l~~~~q----~p~~lr~ 335 (478)
....+. ....+...+....+|.....+.+-......|+. .|++++.
T Consensus 248 ~~~~~~-~~~~~~L~~~~~~l~~~~~~l~~~l~~~~~Eis~grl~~~Dl~~ 297 (459)
T PF10337_consen 248 PSDEFD-AKSLKKLKATKAKLRALYAKLQAALRFLKLEISYGRLSPDDLKP 297 (459)
T ss_pred CCCccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHeeecCCHHHHHH
Confidence 111110 001134444445555555555544444445543 4555553
No 16
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=98.66 E-value=1.5e-05 Score=80.47 Aligned_cols=151 Identities=15% Similarity=0.201 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcc--cCCch--HH--HHH
Q 011750 231 MAHQRISTIVIGTSLCILVSMLIRPIWAGKDLYNLIIRNMDKLANSIDGLANFARWEPAHGRFN--FRHPW--KQ--YLK 304 (478)
Q Consensus 231 ~A~~Rl~~I~IGi~iAllVs~~i~P~~A~~~L~~~la~~l~~la~~le~L~~~a~~Ep~~g~~~--~~~p~--~~--y~k 304 (478)
.++.+...+++|+++.++++++.||.+-++..++.+++.+..+|+|++.-+++ ++|..+... .+.+. .+ ..+
T Consensus 70 ~~~~~~~l~~~Gglwy~~lsl~~~~l~p~r~~rqaLa~~y~~lA~yl~~ka~~--~~p~~~~~~~~~~~~l~~~q~~v~~ 147 (284)
T PF12805_consen 70 EALEHALLFLAGGLWYLLLSLLWWPLRPYRPVRQALAECYRALADYLRAKARF--FDPDQHDDDEQLRIELAQQQIKVNE 147 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhc--CCCCCccchhHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999875544 344321110 00000 00 001
Q ss_pred HHHHHHHH-----------------------HHHHHHHHHHHhhhcCCCHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q 011750 305 VGAAVRRC-----------------------AYCIEALNACINSENQAPEFIKKL-----LCNTCLRVSSNSSRVVKELA 356 (478)
Q Consensus 305 i~~~lR~~-----------------------a~~i~aL~~~l~~~~q~p~~lr~~-----l~~~~~~l~~~~~~vL~~La 356 (478)
..+.+|+. ...+|-....+.+.. ..+++++. +...++++..+.++.|+++|
T Consensus 148 ~~~~~R~~l~~~r~~~~~~~~~~~~~ll~~~~~a~Dl~E~~~as~~-~y~~l~~~f~~~~~l~~~~~~l~~~a~~l~~ia 226 (284)
T PF12805_consen 148 ALEQARELLLRRRRSGRGKPSTYGRRLLLLFFEAVDLFERALASHY-DYEELREQFKHSDVLFRFQRLLEQLAQALRQIA 226 (284)
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 111111111111111 22334443 34568888899999999999
Q ss_pred HHHHhcccCCChhhhHHHHHHHHHHHHHHHhh
Q 011750 357 KIIKTMKKSSTIDLLVEEMNAAVKELKDDLKS 388 (478)
Q Consensus 357 ~si~~m~~~~~~~~~~~~l~~A~~~L~~~i~~ 388 (478)
.++...++... .++++.+.++|++.++.
T Consensus 227 ~ai~~~~~~~~----~~~l~~~l~~l~~~l~~ 254 (284)
T PF12805_consen 227 QAILRGRPYHH----RNRLKRALEALEESLEF 254 (284)
T ss_pred HHHHcCCCCCC----chHHHHHHHHHHHHHHH
Confidence 99996655442 25677888888888765
No 17
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=98.50 E-value=0.00011 Score=82.93 Aligned_cols=172 Identities=15% Similarity=0.101 Sum_probs=109.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhccCCCchHHHHHhHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 011750 94 KVIHCLKVGIALTVVSLFYYTRPLYEGVGGNAMWAIMTVVVVFENTVGATIAKCLNRVFGTLLAGFLALGVHWIASQSGE 173 (478)
Q Consensus 94 r~~~AlKv~lA~~L~sll~~~~~~~~~l~~~g~WAvlTvvvV~qpsvGaTl~kg~~RilGTliG~~lgl~~~~l~~~~G~ 173 (478)
++.+++|+.+|+..+.++.+. .+..+.++=+.+.++...-.+..+.+..=+.+++-|++...++.+...+..
T Consensus 7 ~~~~~lri~ia~~~~~~~~~~----~~~~~~~~~l~LG~ia~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll~---- 78 (704)
T TIGR01666 7 KVIYTIPIFIALNGAAVGIWF----FDISSQSMPLILGIIAAALVDLDDRLTGRLKNVIFTLICFSIASFSVELLF---- 78 (704)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----hCchhHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 488999999999886554322 222223444556666555566667777778888888888888877765544
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011750 174 KLEPLIAGASLFLLASAATFSRFIPTFKARFDYGALIFILTFSLVTVSGYRVDKLFNMAHQRISTIVIGTSLCILVSMLI 253 (478)
Q Consensus 174 ~~~p~ll~~~vfl~~~~a~~~~~~p~~k~~y~yg~~if~lT~~LV~l~~~~~~~~~~~A~~Rl~~I~IGi~iAllVs~~i 253 (478)
..|+++...+++.+++++.+.- +.+| |+ .+++.|.. |+++...+.......+..-+.+++|.++-.+++++.
T Consensus 79 -~~p~lf~~~l~~~tf~~~mlga---~G~R--ya-~Iaf~tLl-iaiytmlg~~~~~~w~~~pllll~GalwY~llsl~~ 150 (704)
T TIGR01666 79 -GKPWLFAVGLTVSTFGFIMLGA---VGQR--YA-TIAFGSLL-VALYTMLGYIEVNVWFIQPVMLLCGTLWYSVVTLIV 150 (704)
T ss_pred -cCcHHHHHHHHHHHHHHHHHHH---hhhh--HH-HHHHHHHH-HHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344444444443333333221 2233 33 23333332 222221111111123448889999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHh
Q 011750 254 RPIWAGKDLYNLIIRNMDKLANSIDGLA 281 (478)
Q Consensus 254 ~P~~A~~~L~~~la~~l~~la~~le~L~ 281 (478)
|+.|..+.+++.+++.++.+++|++.-.
T Consensus 151 ~~l~p~rp~q~~LA~~y~~La~yL~aka 178 (704)
T TIGR01666 151 HLFFPNRPVQENLAKAFCQLAEYLETKS 178 (704)
T ss_pred HHHcCCChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998744
No 18
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=98.50 E-value=4.6e-05 Score=85.96 Aligned_cols=266 Identities=16% Similarity=0.156 Sum_probs=148.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhccCCCchHHHHHhHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 011750 94 KVIHCLKVGIALTVVSLFYYTRPLYEGVGGNAMWAIMTVVVVFENTVGATIAKCLNRVFGTLLAGFLALGVHWIASQSGE 173 (478)
Q Consensus 94 r~~~AlKv~lA~~L~sll~~~~~~~~~l~~~g~WAvlTvvvV~qpsvGaTl~kg~~RilGTliG~~lgl~~~~l~~~~G~ 173 (478)
.+.+++|+.+|+..+.++.+ +.+....++=+.+-++...-.+..+.+..=+.+++-|++...++.+...+..
T Consensus 7 ~~~~~l~v~ia~~~~~~~~~----~~g~~~~~i~l~lG~ia~~l~D~~~~~~~R~~~l~it~~~f~i~sl~v~ll~---- 78 (701)
T TIGR01667 7 KLVYCLPVFIALMGAELRIW----WFGLLFLLIPLCLGIIAAGLDDLDDRLTGRLKNLIITLSCFSIASFLVQLLF---- 78 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HhCCccHHHHHHHhhHhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 47899999999988655432 2222224444555555454456666666667777777777766666665433
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhhhcccchh---HHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011750 174 KLEPLIAGASLFLLASAATFSRFIPTFKARFD---YGALIFILTFSLVTVSGYRVDKLFNMAHQRISTIVIGTSLCILVS 250 (478)
Q Consensus 174 ~~~p~ll~~~vfl~~~~a~~~~~~p~~k~~y~---yg~~if~lT~~LV~l~~~~~~~~~~~A~~Rl~~I~IGi~iAllVs 250 (478)
..|+++...+++++++++.+.- +.+||. +|. +.+..|.+ .+...... .+.--+.+++|.++-.+++
T Consensus 79 -~~p~~~~~~l~~~tf~~~mlga---~G~r~~~I~f~~-L~~aiytm---l~~~~~~~---w~~~pllll~GalwY~l~s 147 (701)
T TIGR01667 79 -PKPWLFPFLLTLLTFGFILLGA---LGQRYATIAFAS-LLAAIYTM---LGAGEVPV---WFIEPLLILAGTLWYGLLT 147 (701)
T ss_pred -cchHHHHHHHHHHHHHHHHHHH---hhhhHHhHHHHH-HHHHHHHH---cCcccccH---HHHHHHHHHHHHHHHHHHH
Confidence 2454444444444443333322 223442 221 11111111 12222222 2336667888999999999
Q ss_pred hhcccccchHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccCCchHHH-------HHHHHHHHHHHHHH-------
Q 011750 251 MLIRPIWAGKDLYNLIIRNMDKLANSIDGLANFARWEPAHGRFNFRHPWKQY-------LKVGAAVRRCAYCI------- 316 (478)
Q Consensus 251 ~~i~P~~A~~~L~~~la~~l~~la~~le~L~~~a~~Ep~~g~~~~~~p~~~y-------~ki~~~lR~~a~~i------- 316 (478)
++.++.|..+.+++.+++.++.+++|++.=.++ ++|..+.- +-+.+ .++...+.+|...+
T Consensus 148 ll~~~l~p~rp~q~~La~~y~~La~yL~aKa~l--f~p~~~~~----~~~~~~~l~~~n~~lv~~ln~~~~~ll~r~~~~ 221 (701)
T TIGR01667 148 LIWFLLFPNQPLQESLSRLYRELAEYLEAKSSL--FDPDQHTD----PEKALLPLAVRNGKVVDALNQCKQQLLMRLRGN 221 (701)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhC--CCCCCCCC----hhHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999863322 34422110 01111 11222221211111
Q ss_pred ----------------HHHHHHHhhhcCCCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcccCCChhhhHHHH
Q 011750 317 ----------------EALNACINSENQAPEFIKKLLCNT-----CLRVSSNSSRVVKELAKIIKTMKKSSTIDLLVEEM 375 (478)
Q Consensus 317 ----------------~aL~~~l~~~~q~p~~lr~~l~~~-----~~~l~~~~~~vL~~La~si~~m~~~~~~~~~~~~l 375 (478)
.-+|-...+...-++++++.+... ++++-...++.+++++.++...++.. . .+..
T Consensus 222 ~~~~~~~rll~~y~~A~di~E~a~ss~~~Y~~L~~~f~~sd~l~~~~~ll~~~a~a~~~la~ai~~~~~~~-~---~~~~ 297 (701)
T TIGR01667 222 RTDPLTKRMLRYYFEAQDIHERASSSHHQYQELQELFEHSDVLFRIQRLLQTQAQACQVLARDILLRQPYY-H---RLRT 297 (701)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-C---CchH
Confidence 112222222122344566665555 88888899999999999999654432 1 1346
Q ss_pred HHHHHHHHHHHhh
Q 011750 376 NAAVKELKDDLKS 388 (478)
Q Consensus 376 ~~A~~~L~~~i~~ 388 (478)
+.+.+.++..+..
T Consensus 298 ~~~~~~l~~sl~~ 310 (701)
T TIGR01667 298 ERALEKQIAALEK 310 (701)
T ss_pred HHHHHHHHHHHHH
Confidence 6667666666653
No 19
>PF10334 DUF2421: Protein of unknown function (DUF2421); InterPro: IPR018820 This domain is found in several uncharacterised proteins and in Brefeldin A-sensitivity protein 4, which is a zinc finger protein containing five transmembrane domains. Brefeldin A-sensitivity protein 4 null mutant exhibits strongly fragmented vacuoles and sensitivity to brefeldin A, a drug which is known to affect intracellular transport [, , ].
Probab=98.24 E-value=0.00012 Score=71.74 Aligned_cols=155 Identities=15% Similarity=0.122 Sum_probs=88.5
Q ss_pred HhhhhccCCCCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 011750 280 LANFARWEPAHGRFNFRHPWKQYLKVGAAVRRCAYCIEALNACINSENQAPEFIKKLL----CNTCLRVSSNSSRVVKEL 355 (478)
Q Consensus 280 L~~~a~~Ep~~g~~~~~~p~~~y~ki~~~lR~~a~~i~aL~~~l~~~~q~p~~lr~~l----~~~~~~l~~~~~~vL~~L 355 (478)
++.+++|||+.+. +||.+.|.++...+.+....+..|..... ... |.+.+..+ ......+..++-.+|.-+
T Consensus 67 ~l~~~k~Ep~l~G---~FP~~~Y~~l~~~~~~il~~l~~l~~~~~-~l~-~~~~~~~l~~~~~~~~~~~~~~i~~vl~~l 141 (229)
T PF10334_consen 67 LLAFAKFEPSLKG---RFPKETYQRLLELCQNILDLLSLLSYVST-RLE-PSEWRERLLRRTGWLRPELIGDIFSVLYML 141 (229)
T ss_pred HHHHhCcCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHH-Hcc-hhhHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 6778999998332 47899999987777766666655543333 333 55444433 334455666788899999
Q ss_pred HHHHHhcccCCChhhhHHHHHHHHHHHHHHHhhccccccCCccccccccccCCCCccccccccchHHHHHHHHHHHHHHH
Q 011750 356 AKIIKTMKKSSTIDLLVEEMNAAVKELKDDLKSLSLSEAGTSENKRTEKISSKPAAAIPLMGMISMVSFASFQIEIASRI 435 (478)
Q Consensus 356 a~si~~m~~~~~~~~~~~~l~~A~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~slLie~v~~~ 435 (478)
++++++..+.++.-. .+-+++..+.++....... .+.+.....+..+. ......+=..+.+-.+....|+.++
T Consensus 142 s~al~~g~pLP~~lp-~pl~~r~~~~~~~~~~~~~----~~~~~~~~~~~l~~--~~l~~~~y~~~~v~~~~~~~i~~~l 214 (229)
T PF10334_consen 142 SSALRTGQPLPPYLP-APLVRRHFDHLRKLWQLDR----SSDDEVELPDILSL--EHLRDEDYRRFCVAVSAASSILERL 214 (229)
T ss_pred HHHHhcCCCCCccCC-cchHHHHHHHHHHhhhhhh----hhcccchhhhhhhH--HHHhCcChHHHHHHHHHHHHHHHHH
Confidence 999999888754311 1123343333333322111 00000000000000 0112223455666667778999999
Q ss_pred HHHHHHHHHHH
Q 011750 436 ESIVEAVEELA 446 (478)
Q Consensus 436 ~~~~~~v~eL~ 446 (478)
++++..|.+|-
T Consensus 215 D~lv~~vK~lv 225 (229)
T PF10334_consen 215 DELVIVVKELV 225 (229)
T ss_pred HHHHHHHHHHc
Confidence 99999999983
No 20
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=98.17 E-value=0.0022 Score=71.84 Aligned_cols=164 Identities=17% Similarity=0.133 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccCCCchHHHHHhHHhc-cc-ChhHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhc
Q 011750 95 VIHCLKVGIALTVVSLFYYTRPLYEGVGGNAMWAIMTVVVVF-EN-TVGATIAKCLNRVFGTLLAGFLALGVHW-IASQS 171 (478)
Q Consensus 95 ~~~AlKv~lA~~L~sll~~~~~~~~~l~~~g~WAvlTvvvV~-qp-svGaTl~kg~~RilGTliG~~lgl~~~~-l~~~~ 171 (478)
.+-++|+++++.+++++... .+|+ .|.=+++.+.|++ -. +.-+-..-..+=++||++|..+|+++.+ +.|..
T Consensus 353 ~~~glRa~~ai~~~~~fWI~----TgW~-~Ga~a~~~aAV~~~LfA~~~nP~~~~~~fl~Gtl~a~~~a~l~~f~vLP~i 427 (652)
T PRK10631 353 MINGWRTTLATALGTLFWLW----TGWT-SGSGAMVMIAVVTSLAMRLPNPRMVAIDFLYGTLAALPLGALYFMVIIPNT 427 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHH----ccCc-hHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45668888999888876332 3565 5555554444443 21 2222233345556899999999887753 33432
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 011750 172 GEKLEPLIAGASLFLLASAATFSRFIPTFKARFDYGALIFILTFSLVTVSGYRVDKLFNMAHQRISTIVIGTSLCILVSM 251 (478)
Q Consensus 172 G~~~~p~ll~~~vfl~~~~a~~~~~~p~~k~~y~yg~~if~lT~~LV~l~~~~~~~~~~~A~~Rl~~I~IGi~iAllVs~ 251 (478)
.+ +-+ ++++++..+.+ ++...+ ++..++.+-+.+.++..+........-+...++--+..++|+++|+++..
T Consensus 428 ~~-~f~-lL~laLap~~~---~~g~~~---~~~~~~~lg~~i~f~~~l~l~n~~~~d~~~FlN~alA~v~Gi~~A~l~f~ 499 (652)
T PRK10631 428 QQ-SML-LLCISLGVLGF---FIGIEV---QKRRLGSLGALASTINILVLDNPMTFHFSQFLDSALGQIVGCFLALIVIL 499 (652)
T ss_pred cc-cHH-HHHHHHHHHHH---HHHHHh---cccHHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 122 22222222111 111222 12244433334444433333322222244457888999999999999998
Q ss_pred hcccccchHHHHHHHHHHHH
Q 011750 252 LIRPIWAGKDLYNLIIRNMD 271 (478)
Q Consensus 252 ~i~P~~A~~~L~~~la~~l~ 271 (478)
++.|.......++.+.....
T Consensus 500 lirp~~~~r~~rrL~~~~~~ 519 (652)
T PRK10631 500 LVRDNSRDRTGRVLLNQFVS 519 (652)
T ss_pred HhCCCCHHHHHHHHHHHHHH
Confidence 88888666665555554444
No 21
>PF11168 DUF2955: Protein of unknown function (DUF2955); InterPro: IPR022604 Some members in this group of proteins with unknown function are annotated as membrane proteins. However, this cannot be confirmed.
Probab=96.00 E-value=0.25 Score=44.87 Aligned_cols=136 Identities=18% Similarity=0.293 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccCCCchHHHHHhHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhH
Q 011750 98 CLKVGIALTVVSLFYYTRPLYEGVGGNAMWAIMTVVVVFENTVGATIAKCLNRVFGTLLAGFLALGVHWIASQSGEKLEP 177 (478)
Q Consensus 98 AlKv~lA~~L~sll~~~~~~~~~l~~~g~WAvlTvvvV~qpsvGaTl~kg~~RilGTliG~~lgl~~~~l~~~~G~~~~p 177 (478)
++|.+++.+++..+.+. .+++ .|+-+.+-.++++.+.---+.+...+=++.+++-+..+.++..+.. + .|
T Consensus 2 ~LRia~g~~l~l~~~~~----~~~~-~p~~~pvf~~~lL~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~ll~---~--~P 71 (140)
T PF11168_consen 2 ALRIAFGVTLGLFLSKL----FGWP-LPFFAPVFPAILLGMVPPPPLKMLLQLLLVALLTALEGLLLSGLLQ---D--YP 71 (140)
T ss_pred eeehhHHHHHHHHHHHH----HCCC-chHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh---c--CC
Confidence 46777777775554433 3565 8888888888887555555566666666677666666666654333 2 45
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccc-chhHHHHHHHHHHHHHHHc-cCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011750 178 LIAGASLFLLASAATFSRFIPTFKA-RFDYGALIFILTFSLVTVS-GYRVDKLFNMAHQRISTIVIGTSLCILVSML 252 (478)
Q Consensus 178 ~ll~~~vfl~~~~a~~~~~~p~~k~-~y~yg~~if~lT~~LV~l~-~~~~~~~~~~A~~Rl~~I~IGi~iAllVs~~ 252 (478)
....+.++++ .|.+++...++ ++-.| .+..+...++... .++.. .+.++......|++++++++++
T Consensus 72 ~~~~l~v~l~----~~~~f~~~~~~~~~l~~-~~~lv~~~ii~~f~~~~~~----~~~~l~~~l~~~~~iav~i~~l 139 (140)
T PF11168_consen 72 VVMLLLVFLL----FFWSFYRMSRGPKFLFG-TMLLVGLSIIPVFASYNTA----DAEDLILSLVLAILIAVLIAAL 139 (140)
T ss_pred HHHHHHHHHH----HHHHHHHHhCCCchHHH-HHHHHHHHHHHHHHhcCcc----hHHHHHHHHHHHHHHHHHHHHh
Confidence 4443334432 13334433333 22233 2223333333333 33322 3677888888888888887653
No 22
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=87.56 E-value=62 Score=37.56 Aligned_cols=119 Identities=11% Similarity=0.121 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHccCCchh
Q 011750 148 LNRVFGTLLAGFLALGVHWIASQSGEKLEPLIAGASLFLLASAATFSRFIPTFKARFDYGALIFILTFSLVTVSGYRVDK 227 (478)
Q Consensus 148 ~~RilGTliG~~lgl~~~~l~~~~G~~~~p~ll~~~vfl~~~~a~~~~~~p~~k~~y~yg~~if~lT~~LV~l~~~~~~~ 227 (478)
+-.+.|.-+|+..|+++..+....+. ..++.+++.-| .|.+++.+|=+ + ++.-+ .-|+++..++.+++....+
T Consensus 189 ~a~~gG~~~Gaa~Gv~~Gli~~l~~~-~~~~~~~~~af-~GLlaG~fk~~---g-K~g~~-~g~~l~~~il~~y~~~~~~ 261 (764)
T TIGR02865 189 ISYIGGSGAGAAGGVVIGVILGLANN-ANLYQIGVFGF-AGLLGGIFKEL---G-KIGTG-IGYLVGFLILAFYTQGSVA 261 (764)
T ss_pred HHHhcCchHhHHHHHHHHHHHHhcCc-cHHHHHHHHHH-HHHHHHhhccC---C-cceee-HHHHHHHHHHHHHhccchh
Confidence 34455677777777777665554443 35666654433 35555544322 1 22222 2344555555555432222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccch---------------------HHHHHHHHHHHHHHHHHHHHHhh
Q 011750 228 LFNMAHQRISTIVIGTSLCILVSMLIRPIWAG---------------------KDLYNLIIRNMDKLANSIDGLAN 282 (478)
Q Consensus 228 ~~~~A~~Rl~~I~IGi~iAllVs~~i~P~~A~---------------------~~L~~~la~~l~~la~~le~L~~ 282 (478)
.. .. +.++++++++-++ .|.+.. +++++.++..++..++.++.|.+
T Consensus 262 ~~---~~-~~e~~ia~~lFll-----~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~a~~~~~Ls~ 328 (764)
T TIGR02865 262 FS---LA-LYEALIATLLFLL-----IPNKIYKKLERYLDGERKQPDLQEDYMRKVREIAAEKLEEFSEVFRELSN 328 (764)
T ss_pred HH---HH-HHHHHHHHHHHHH-----hhHHHHHHHHhhCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11 4566666655433 343211 12566666677777777776643
No 23
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=84.99 E-value=44 Score=33.38 Aligned_cols=83 Identities=12% Similarity=0.123 Sum_probs=44.4
Q ss_pred HHHhhhhhcccchhHHHHHHHHHHHHHHHccCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHH
Q 011750 192 TFSRFIPTFKARFDYGALIFILTFSLVTVSGYR---VDKLFNMAHQRISTIVIGTSLCILVSMLIRPIWAGKDLYNLIIR 268 (478)
Q Consensus 192 ~~~~~~p~~k~~y~yg~~if~lT~~LV~l~~~~---~~~~~~~A~~Rl~~I~IGi~iAllVs~~i~P~~A~~~L~~~la~ 268 (478)
...|++| |+.--|+.++.+.++....+.... ..-..++...=+.-+++.+++..+|++-..|.. ..+.++.+..
T Consensus 56 ~~~k~lP--rk~~~~~~l~gg~~~~~y~l~~~~~nl~~il~~~~~~v~~yv~~~G~vsf~vcy~~gp~~-~~rs~~~v~W 132 (249)
T PF10225_consen 56 QLSKLLP--RKSMFYAVLYGGWSFGLYFLQQLWENLQSILEEYRIYVLGYVLVVGLVSFAVCYRYGPPV-DPRSRNFVKW 132 (249)
T ss_pred HHHHHcc--CcchhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCc-cHhHHHHHHH
Confidence 3567788 444456666655555433332111 111222233333445555557777777666664 4666677777
Q ss_pred HHHHHHHHH
Q 011750 269 NMDKLANSI 277 (478)
Q Consensus 269 ~l~~la~~l 277 (478)
.++.++-.+
T Consensus 133 ~Lqligl~l 141 (249)
T PF10225_consen 133 ALQLIGLVL 141 (249)
T ss_pred HHHHHHHHH
Confidence 777776653
No 24
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=77.14 E-value=9.7 Score=30.55 Aligned_cols=43 Identities=16% Similarity=0.284 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHH
Q 011750 237 STIVIGTSLCILVSMLIRPIWAGKDLYNLIIRNMDKLANSIDGL 280 (478)
Q Consensus 237 ~~I~IGi~iAllVs~~i~P~~A~~~L~~~la~~l~~la~~le~L 280 (478)
.-+++|.+++.++.+++-| ..++++++.+.+..+.+.+.++.+
T Consensus 3 ~g~l~Ga~~Ga~~glL~aP-~sG~e~R~~l~~~~~~~~~~~~~~ 45 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLLFAP-KSGKETREKLKDKAEDLKDKAKDL 45 (74)
T ss_pred HHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999988888 688999999999888887766553
No 25
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=70.87 E-value=19 Score=32.53 Aligned_cols=46 Identities=28% Similarity=0.227 Sum_probs=31.3
Q ss_pred ccCCCchHHHHHhHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011750 120 GVGGNAMWAIMTVVVVFENTVGATIAKCLNRVFGTLLAGFLALGVHW 166 (478)
Q Consensus 120 ~l~~~g~WAvlTvvvV~qpsvGaTl~kg~~RilGTliG~~lgl~~~~ 166 (478)
.+++.-..+.++++.++...-..... .++|++=|++|..+|+++-+
T Consensus 94 ~~~~~~~~a~v~~~~i~~~~~~~~~~-~~~r~l~t~iG~~va~lVN~ 139 (141)
T PF06081_consen 94 KLGEGIIVAAVTFVHILLSGSDSFSY-ALNRVLLTLIGIGVALLVNL 139 (141)
T ss_pred CCCCeehHHHHHHHHHHHcCCccHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 44433455666666666543333344 99999999999999998854
No 26
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=64.21 E-value=1e+02 Score=27.26 Aligned_cols=37 Identities=27% Similarity=0.427 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHH
Q 011750 236 ISTIVIGTSLCILVSMLIRPIWAGKDLYNLIIRNMDKL 273 (478)
Q Consensus 236 l~~I~IGi~iAllVs~~i~P~~A~~~L~~~la~~l~~l 273 (478)
+.-+++|++++.++.+++-| ..+..+|+.+.+..+.+
T Consensus 8 l~G~liGgiiGa~aaLL~AP-~sGkelR~~~K~~~~~~ 44 (115)
T COG4980 8 LFGILIGGIIGAAAALLFAP-KSGKELRKKLKKSGDAL 44 (115)
T ss_pred HHHHHHHHHHHHHHHHHhCC-cccHHHHHHHHHHHHHh
Confidence 45588999999998877666 56777885554444433
No 27
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.82 E-value=27 Score=30.61 Aligned_cols=43 Identities=16% Similarity=0.079 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHh
Q 011750 147 CLNRVFGTLLAGFLALGVHWIASQSGEKLEPLIAGASLFLLASAATFSR 195 (478)
Q Consensus 147 g~~RilGTliG~~lgl~~~~l~~~~G~~~~p~ll~~~vfl~~~~a~~~~ 195 (478)
+..=+-||++|+.+|+++=.++. . .|..+. ...++|+++.+..
T Consensus 49 ssefIsGilVGa~iG~llD~~ag---T--sPwglI-v~lllGf~AG~ln 91 (116)
T COG5336 49 SSEFISGILVGAGIGWLLDKFAG---T--SPWGLI-VFLLLGFGAGVLN 91 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC---C--CcHHHH-HHHHHHHHHHHHH
Confidence 34456899999999998865544 2 354332 2334566666554
No 28
>PF12841 YvrJ: YvrJ protein family; InterPro: IPR024419 This entry is represents a family of uncharacterised protein. The function of the Bacillus subtilis YvrJ protein is not known, but its expression is regulated by the cell envelope stress-inducible sigma factor YvrI [].
Probab=63.11 E-value=18 Score=25.69 Aligned_cols=31 Identities=13% Similarity=0.310 Sum_probs=28.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011750 417 GMISMVSFASFQIEIASRIESIVEAVEELAN 447 (478)
Q Consensus 417 ~~~~~~t~~slLie~v~~~~~~~~~v~eL~~ 447 (478)
-..|.+.-+.||+.+=.++|++.+++++|.+
T Consensus 6 ~GFPi~va~yLL~R~E~kld~L~~~i~~L~~ 36 (38)
T PF12841_consen 6 VGFPIAVAIYLLVRIEKKLDELTESINELSE 36 (38)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578999999999999999999999999975
No 29
>PF13295 DUF4077: Domain of unknown function (DUF4077)
Probab=63.09 E-value=48 Score=29.51 Aligned_cols=79 Identities=20% Similarity=0.474 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHccCCc-hhHHHH-----------HHHHHHHHHHHHHHHH
Q 011750 180 AGASLFLLASAATFSRFIPTFKARFDYGALIFILTFSLVTVSGYRV-DKLFNM-----------AHQRISTIVIGTSLCI 247 (478)
Q Consensus 180 l~~~vfl~~~~a~~~~~~p~~k~~y~yg~~if~lT~~LV~l~~~~~-~~~~~~-----------A~~Rl~~I~IGi~iAl 247 (478)
+|+++.++|...+ |+..+.+-|.|-.....+.+..+++-.++. +..+++ .-.|+.-|+-|+.+.
T Consensus 54 cgisvvvfgtllt---fiesmeamykyimtfmllmmsfimvqafnespavfqmvyftlavsliylserlvvilggvavv- 129 (175)
T PF13295_consen 54 CGISVVVFGTLLT---FIESMEAMYKYIMTFMLLMMSFIMVQAFNESPAVFQMVYFTLAVSLIYLSERLVVILGGVAVV- 129 (175)
T ss_pred hchhhhhHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhHHHHhcccchhe-
Confidence 4455555454333 344444556676544444445555555443 333322 245777666665433
Q ss_pred HHHhhcccccchHHHH
Q 011750 248 LVSMLIRPIWAGKDLY 263 (478)
Q Consensus 248 lVs~~i~P~~A~~~L~ 263 (478)
....++..|-.+-+.
T Consensus 130 -ltfilcsywpeqffa 144 (175)
T PF13295_consen 130 -LTFILCSYWPEQFFA 144 (175)
T ss_pred -eehhhhhcChHHHHH
Confidence 334445555444433
No 30
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=56.92 E-value=2.7e+02 Score=29.60 Aligned_cols=78 Identities=21% Similarity=0.362 Sum_probs=46.7
Q ss_pred HHHHHHhhcCCCchhH-HHHHHHHH-HHHHHHHHHhhhhhhhccCCCchHHHHHhHHhccc-ChhHHHHHHHHHHHHHHH
Q 011750 80 FLEKAWDLGVDDPRKV-IHCLKVGI-ALTVVSLFYYTRPLYEGVGGNAMWAIMTVVVVFEN-TVGATIAKCLNRVFGTLL 156 (478)
Q Consensus 80 ~~~~~~~~~~~d~rr~-~~AlKv~l-A~~L~sll~~~~~~~~~l~~~g~WAvlTvvvV~qp-svGaTl~kg~~RilGTli 156 (478)
+...+++.+-.||++. ..+++.|+ |..+..++|.-.. | ++ +.....+. +. +-+..+....++.+|+.-
T Consensus 199 iv~~i~~~g~~~~~~~~~~~i~~G~ia~i~l~~vY~~L~-~--lG-----a~~~~~~~-~~~~~~~~l~~~a~~~~G~~G 269 (378)
T TIGR00796 199 VVNAIRSRGVTKPKKITKYTIKAGLIAAVLLAFIYLSLF-Y--LG-----ATSAAAAG-DAVNGAQILSAYSQHLFGSLG 269 (378)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--Hh-----cCcHhhhc-ccCCcHHHHHHHHHHHcchhH
Confidence 3456666666676554 67888888 5555554443222 1 11 11111111 11 457778888999999998
Q ss_pred HHHHHHHHHH
Q 011750 157 AGFLALGVHW 166 (478)
Q Consensus 157 G~~lgl~~~~ 166 (478)
+.++++++..
T Consensus 270 ~~ll~i~v~l 279 (378)
T TIGR00796 270 SFLLGLIITL 279 (378)
T ss_pred HHHHHHHHHH
Confidence 8888887753
No 31
>PF01865 PhoU_div: Protein of unknown function DUF47; InterPro: IPR018445 This family includes prokaryotic proteins of unknown function, as well as a protein annotated as the pit accessory protein from Rhizobium meliloti (Sinorhizobium meliloti) (O30498 from SWISSPROT). However, the function of this protein is also unknown (Pit stands for Phosphate transport) [].; PDB: 2OLT_C 2IIU_C 3L39_A.
Probab=52.41 E-value=1.1e+02 Score=29.18 Aligned_cols=33 Identities=18% Similarity=0.357 Sum_probs=19.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 011750 328 QAPEFIKKLLCNTCLRVSSNSSRVVKELAKIIKTMKK 364 (478)
Q Consensus 328 q~p~~lr~~l~~~~~~l~~~~~~vL~~La~si~~m~~ 364 (478)
..|++++. +...+...+.+....+...++.+..
T Consensus 107 ~~~~~~~~----~~~~l~~~~~~~~~~l~~~i~~l~~ 139 (214)
T PF01865_consen 107 EIPEELRE----EFQELAEIVVEAIEELVEAIEELKS 139 (214)
T ss_dssp ---CCGHH----HHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCcchhH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555553 4556666666777777778877665
No 32
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=51.46 E-value=2.5e+02 Score=30.66 Aligned_cols=114 Identities=23% Similarity=0.269 Sum_probs=60.5
Q ss_pred cccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCchhHHHHHHHHHHHHHHHHHHhhhhh-cc-------cchh
Q 011750 136 FENTVGATIAKCLNRVFGTLLAGFLALGVHWIASQS--GEKLEPLIAGASLFLLASAATFSRFIPT-FK-------ARFD 205 (478)
Q Consensus 136 ~qpsvGaTl~kg~~RilGTliG~~lgl~~~~l~~~~--G~~~~p~ll~~~vfl~~~~a~~~~~~p~-~k-------~~y~ 205 (478)
.+-+.|..-.+..--..|++.|++.|.+.=.+.... |. ..|- ..++.++.|++.+++|-.-. -| ....
T Consensus 93 iKIsFgfIpi~l~G~LFGP~~G~l~g~lsDlLg~if~~G~-fFpG-FTLsA~L~GlIyGl~r~~l~~~~~~~~~~~~~~~ 170 (477)
T PRK12821 93 FRVTLELILVKISGLLFGPIIGIFSAATIDFLTVIFSGGV-FNYG-YVLGAILTGMIAGILREVLISTKYLKNRNLSDFA 170 (477)
T ss_pred EEEehhhHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCC-ccHH-HHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhH
Confidence 344566677777778899999999998775444211 21 2232 22345556666666654311 00 0223
Q ss_pred HHHH-------HHHHHHHHHH-HccC----C-----------chhHHHHHHHHHHHHHHHHHHHHHHHh
Q 011750 206 YGAL-------IFILTFSLVT-VSGY----R-----------VDKLFNMAHQRISTIVIGTSLCILVSM 251 (478)
Q Consensus 206 yg~~-------if~lT~~LV~-l~~~----~-----------~~~~~~~A~~Rl~~I~IGi~iAllVs~ 251 (478)
|... .|++|-..+. ++.. + .+..+.+...+...|++|..++.++.+
T Consensus 171 y~~~s~~~~~a~fl~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~is~~~~~~i~~~f~~~~i~~~ 239 (477)
T PRK12821 171 YLVLSVGMVIASFLLTQFFVISVTTNLPEIRINGGFDLSFNAVSQTFKISLVVYTWIILYFGIGIIIFM 239 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccccccCCCeEEEeccCCcchhhhHHHHHHHHHHHHHHHHHHH
Confidence 4433 2233322221 1100 0 123467888888888888777665543
No 33
>TIGR00930 2a30 K-Cl cotransporter.
Probab=50.35 E-value=2.7e+02 Score=33.29 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=19.2
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011750 138 NTVGATIAKCLNRVFGTLLAGFLALGVH 165 (478)
Q Consensus 138 psvGaTl~kg~~RilGTliG~~lgl~~~ 165 (478)
|..|+.. --+.|.+|+..|+.+|+..+
T Consensus 140 p~aGG~Y-~yisralGp~~Gf~iG~~~~ 166 (953)
T TIGR00930 140 VKGGGAY-YLISRSLGPEFGGSIGLIFA 166 (953)
T ss_pred CCccHHH-HHHHHHhCcHHHHHHHHHHH
Confidence 4444443 34578899999999998765
No 34
>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins. The function of this family is unknown.; GO: 0016020 membrane
Probab=48.34 E-value=1.9e+02 Score=26.36 Aligned_cols=19 Identities=11% Similarity=0.167 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 011750 152 FGTLLAGFLALGVHWIASQ 170 (478)
Q Consensus 152 lGTliG~~lgl~~~~l~~~ 170 (478)
+|+..|+++|.+-..+...
T Consensus 49 ~Gp~~G~ivg~ig~~l~dl 67 (169)
T PF07155_consen 49 FGPKYGAIVGAIGDLLSDL 67 (169)
T ss_pred HChHHHHHHHHHHHHHHHH
Confidence 6777777776665555554
No 35
>PF15225 IL32: Interleukin 32
Probab=48.24 E-value=47 Score=28.01 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=34.7
Q ss_pred CCCccccccccchhhhHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 011750 46 DGSSETLVPEAGLASRLWLGVKNMIGGLVLKVWRFLEKAWDL 87 (478)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (478)
|.+++..+|+..+.-++.+++...+..+..+..++..|++++
T Consensus 27 Dp~te~~eP~Esf~dkvmR~FqamlqrLQ~ww~~vlAWVkk~ 68 (104)
T PF15225_consen 27 DPATEVWEPGESFCDKVMRWFQAMLQRLQTWWQAVLAWVKKM 68 (104)
T ss_pred CcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445678888899999999999999999999999998765
No 36
>PRK09823 putative inner membrane protein; Provisional
Probab=47.56 E-value=2e+02 Score=26.33 Aligned_cols=90 Identities=21% Similarity=0.247 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHH--HHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHccCC
Q 011750 147 CLNRVFGTLLAGFLALGVHWIASQSGEKLEPLIA--GASLFLLASAATFSRFIPTFKARFDYGALIFILTFSLVTVSGYR 224 (478)
Q Consensus 147 g~~RilGTliG~~lgl~~~~l~~~~G~~~~p~ll--~~~vfl~~~~a~~~~~~p~~k~~y~yg~~if~lT~~LV~l~~~~ 224 (478)
++.-++|+.+|+.+.++...+.+ |.+ ++.++ ...++-+.... .+-||..-+.+|-..++.-
T Consensus 12 ~wFallGPlIGv~~~i~~i~f~~--~~~-~~~lll~i~~i~plf~~l-----------~w~~g~~pAlLTGVa~Acl--- 74 (160)
T PRK09823 12 LWFALLGPLIGVLFLVLYIFFLP--GAK-EPLLLLVIIQVLPLFLLL-----------SWTTGAIPALLTGVAVACL--- 74 (160)
T ss_pred hHHHHhcchhhhHHHHHHHHhcC--CCC-CchhhhHHHHhhHHHHHH-----------HHHHhhHHHHHHHHHHHhC---
Confidence 44556899999998877766544 322 33322 22222211111 2345666666776544432
Q ss_pred chhHHHHHHHHHHHHHH-HHHHHHHHHhhc
Q 011750 225 VDKLFNMAHQRISTIVI-GTSLCILVSMLI 253 (478)
Q Consensus 225 ~~~~~~~A~~Rl~~I~I-Gi~iAllVs~~i 253 (478)
..++++-.++|.+.-.+ |++++.+.+..+
T Consensus 75 P~kiyq~~~~R~lacgi~G~vIttLy~~~~ 104 (160)
T PRK09823 75 PEKIYQQKIYRCLACGIGGVVITTLYCAVI 104 (160)
T ss_pred cHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 36788889999988655 555777766544
No 37
>PRK11715 inner membrane protein; Provisional
Probab=45.70 E-value=1.4e+02 Score=32.46 Aligned_cols=41 Identities=12% Similarity=0.025 Sum_probs=22.7
Q ss_pred CchHHHHHhHHhcccChhHHHHHHHHHHHH--HHHHHHHHHHH
Q 011750 124 NAMWAIMTVVVVFENTVGATIAKCLNRVFG--TLLAGFLALGV 164 (478)
Q Consensus 124 ~g~WAvlTvvvV~qpsvGaTl~kg~~RilG--TliG~~lgl~~ 164 (478)
-+|++.-.+++.+-..+.....|++.|.++ ..+.++.|++.
T Consensus 359 ~AYliAa~a~v~li~~Y~~~vl~~~k~g~~~~~~L~~LYg~Ly 401 (436)
T PRK11715 359 LAYLIAALACVLLIGFYLSAVLRSWKRGLLFAAALAALYGVLY 401 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666666543 33333444333
No 38
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=44.97 E-value=1.6e+02 Score=31.94 Aligned_cols=71 Identities=23% Similarity=0.237 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccC-CCchHHHHHhHHhcccChhHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 011750 95 VIHCLKVGIALTVVSLFYYTRPLYEGVG-GNAMWAIMTVVVVFENTVGATIAKCLNRVF--GTLLAGFLALGVHWI 167 (478)
Q Consensus 95 ~~~AlKv~lA~~L~sll~~~~~~~~~l~-~~g~WAvlTvvvV~qpsvGaTl~kg~~Ril--GTliG~~lgl~~~~l 167 (478)
.+.=+=+|+|+++-.++ +..+..+++ .-+|++.-.+++.+-..+.....|++.|.+ |.+++++.|++...+
T Consensus 325 piQY~LVGlAl~lFYlL--LLSlSEhi~F~~AYliAa~a~i~Li~~Y~~~vl~~~k~~~~~~~~L~~LY~~Ly~lL 398 (430)
T PF06123_consen 325 PIQYLLVGLALVLFYLL--LLSLSEHIGFNLAYLIAALACIGLISLYLSSVLKSWKRGLIFAGLLAALYGFLYVLL 398 (430)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 33444456666654433 223323332 267777777777777767777777776654 444445555444433
No 39
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=44.60 E-value=18 Score=36.97 Aligned_cols=21 Identities=33% Similarity=0.427 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011750 148 LNRVFGTLLAGFLALGVHWIA 168 (478)
Q Consensus 148 ~~RilGTliG~~lgl~~~~l~ 168 (478)
+-|+.|+++||++|++...+.
T Consensus 344 ~IrinGallG~liG~~~~~i~ 364 (367)
T PF04286_consen 344 WIRINGALLGGLIGLLQYLIL 364 (367)
T ss_pred hhhhhhHHHHHHHHHHHHHHH
Confidence 569999999999999886554
No 40
>PRK10263 DNA translocase FtsK; Provisional
Probab=41.53 E-value=6.8e+02 Score=31.19 Aligned_cols=14 Identities=43% Similarity=0.556 Sum_probs=6.1
Q ss_pred hhHHHHHHHHHHHH
Q 011750 140 VGATIAKCLNRVFG 153 (478)
Q Consensus 140 vGaTl~kg~~RilG 153 (478)
+|+.+...+.-++|
T Consensus 67 VGA~LAD~L~~LFG 80 (1355)
T PRK10263 67 PGAWLADTLFFIFG 80 (1355)
T ss_pred HHHHHHHHHHHHHh
Confidence 34444444444444
No 41
>PRK09776 putative diguanylate cyclase; Provisional
Probab=41.44 E-value=4.7e+02 Score=30.92 Aligned_cols=37 Identities=16% Similarity=0.056 Sum_probs=22.2
Q ss_pred CchHHHHHhHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011750 124 NAMWAIMTVVVVFENTVGATIAKCLNRVFGTLLAGFLALGVHW 166 (478)
Q Consensus 124 ~g~WAvlTvvvV~qpsvGaTl~kg~~RilGTliG~~lgl~~~~ 166 (478)
.++|-.-.+.+ |..+..+..+..|-++|+++|.++..
T Consensus 25 ~~iW~~~g~~~------~~ll~~~~~~~~~~~~~~~~~~l~~~ 61 (1092)
T PRK09776 25 APLWFPTAIMM------VAFYRHAGRMWPGILLSCSLGNIAAN 61 (1092)
T ss_pred ccccccHHHHH------HHHHhcchhhhHHHHHHHHHHHHhHh
Confidence 45665555444 55566666666677777776665543
No 42
>PRK11060 rod shape-determining protein MreD; Provisional
Probab=40.59 E-value=1.6e+02 Score=27.45 Aligned_cols=17 Identities=12% Similarity=0.374 Sum_probs=13.0
Q ss_pred CchHHHHHhH--HhcccCh
Q 011750 124 NAMWAIMTVV--VVFENTV 140 (478)
Q Consensus 124 ~g~WAvlTvv--vV~qpsv 140 (478)
+|.|.++..+ ++.+|+.
T Consensus 35 rPdwv~Lvl~YW~l~~P~r 53 (162)
T PRK11060 35 RPSWLLLILIYWVLALPHR 53 (162)
T ss_pred CchHHHHHHHHHHHhCCCc
Confidence 8999988776 4568854
No 43
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=40.47 E-value=1.3e+02 Score=30.40 Aligned_cols=18 Identities=11% Similarity=0.390 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011750 149 NRVFGTLLAGFLALGVHW 166 (478)
Q Consensus 149 ~RilGTliG~~lgl~~~~ 166 (478)
.=++|.++|++.+.++..
T Consensus 35 Rll~~A~~Gal~~~~~~~ 52 (293)
T PF03419_consen 35 RLLLGAAIGALYSLLIFF 52 (293)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 345788888888776653
No 44
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=38.03 E-value=7.2e+02 Score=29.09 Aligned_cols=39 Identities=15% Similarity=0.226 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHH
Q 011750 239 IVIGTSLCILVSMLIRPIWAGKDLYNLIIRNMDKLANSIDG 279 (478)
Q Consensus 239 I~IGi~iAllVs~~i~P~~A~~~L~~~la~~l~~la~~le~ 279 (478)
+++|++++++.+-.+- ..-++....+.++++++..++..
T Consensus 153 il~g~i~aF~~n~~l~--~~v~~~~~~~~~~~~Dl~~~l~~ 191 (806)
T PF05478_consen 153 ILFGVICAFVANQQLS--TGVDDTPNTVNSTLDDLRTFLND 191 (806)
T ss_pred HHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHh
Confidence 4557777766664331 11222334555566666555544
No 45
>PF09877 DUF2104: Predicted membrane protein (DUF2104); InterPro: IPR019211 This entry is found in various hypothetical archaeal proteins, has no known function.
Probab=37.74 E-value=2.5e+02 Score=24.22 Aligned_cols=19 Identities=16% Similarity=0.301 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 011750 151 VFGTLLAGFLALGVHWIAS 169 (478)
Q Consensus 151 ilGTliG~~lgl~~~~l~~ 169 (478)
++.=++|+++|+...|--.
T Consensus 9 ~i~fiiGs~~GL~ySYkKy 27 (99)
T PF09877_consen 9 IILFIIGSFLGLEYSYKKY 27 (99)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4566778888887766433
No 46
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=37.19 E-value=2.4e+02 Score=29.44 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhcCC
Q 011750 146 KCLNRVFGTLLAGFLALGVH-WIASQSGE 173 (478)
Q Consensus 146 kg~~RilGTliG~~lgl~~~-~l~~~~G~ 173 (478)
+.+-|++=+++|+.+|+... .+...+|.
T Consensus 3 ~~ii~l~~~i~g~~lG~~~~p~ll~~~~~ 31 (356)
T COG4956 3 KWIIILLFIIIGAVLGFAVIPELLADLGI 31 (356)
T ss_pred HHHHHHHHHHHHhhhhHhhHHHHHhhcCc
Confidence 45668888999999999887 56665554
No 47
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=36.98 E-value=4.5e+02 Score=26.45 Aligned_cols=74 Identities=16% Similarity=0.206 Sum_probs=32.8
Q ss_pred chHHHHH-hHHhcccChhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcC-CchhHHHHHHHHHHHHHHHHHHhhhhhc
Q 011750 125 AMWAIMT-VVVVFENTVGATIA-KCLNRVFGTLLAGFLALGVHWIASQSG-EKLEPLIAGASLFLLASAATFSRFIPTF 200 (478)
Q Consensus 125 g~WAvlT-vvvV~qpsvGaTl~-kg~~RilGTliG~~lgl~~~~l~~~~G-~~~~p~ll~~~vfl~~~~a~~~~~~p~~ 200 (478)
..|.... .++..=|..-.... +...+++--++|.++++.+....+... ...++-. ..+|++|+++...-..|.+
T Consensus 85 ~t~~fF~GLIlgSip~l~k~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~--~~lf~~G~ia~~AMIlPGi 161 (257)
T PF04018_consen 85 PTYSFFFGLILGSIPFLYKEIKKFSPKSIIFFLLGAIIALLLSFLSSATQSSLSNPSY--LYLFLAGAIAACAMILPGI 161 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHccccchhccCcchH--HHHHHHHHHHHHHHhcCCC
Confidence 3444333 33334454433322 344556666677777766654333201 0011111 1245556555444445654
No 48
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=36.35 E-value=2.5e+02 Score=31.00 Aligned_cols=57 Identities=23% Similarity=0.275 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----H----hhcCCchhHHHHHHHHHHHHHHHHHHhhhhhcccchh
Q 011750 148 LNRVFGTLLAGFLALGVHWI-----A----SQSGEKLEPLIAGASLFLLASAATFSRFIPTFKARFD 205 (478)
Q Consensus 148 ~~RilGTliG~~lgl~~~~l-----~----~~~G~~~~p~ll~~~vfl~~~~a~~~~~~p~~k~~y~ 205 (478)
--|++|.++||++|--.+-+ + ...|. ....-+.++-.+-|...+|.-.+..-|.|++
T Consensus 68 NtR~igv~~gGllgGP~Vg~~vGl~~GlhR~~mGg-~ta~~c~iSti~~G~l~g~~~~~~~r~~R~~ 133 (557)
T COG3275 68 NTRAIGVVMGGLLGGPVVGIIVGLTAGLHRYSMGG-MTALSCAISTILEGLLGGLVHLYLIRRGRWD 133 (557)
T ss_pred hhHHHHHHhcccccCChhhhhhhhhhhhhhhhcCC-chhHHHHHHHHHHHHHHHHHHHHhhhccCCC
Confidence 34777777766654321111 0 11232 1233344444455666666655543344565
No 49
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=34.86 E-value=1e+02 Score=26.36 Aligned_cols=41 Identities=29% Similarity=0.255 Sum_probs=30.4
Q ss_pred HHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 011750 213 LTFSLVTVSGYRVDKLFNMAHQRISTIVIGTSLCILVSMLIRPI 256 (478)
Q Consensus 213 lT~~LV~l~~~~~~~~~~~A~~Rl~~I~IGi~iAllVs~~i~P~ 256 (478)
+|..+++ ....++..+.+.+|+.-+++|++++.++.. +.|.
T Consensus 19 it~~~v~--~~~~~~~~~~~~~Ri~Gt~iG~~~~~~~~~-~~~~ 59 (128)
T PF13515_consen 19 ITVVSVL--SPSYGATVNRAIQRILGTLIGVVLGLLLLY-LFPG 59 (128)
T ss_pred HHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCC
Confidence 4544444 335567788999999999999999999874 4553
No 50
>PRK11677 hypothetical protein; Provisional
Probab=34.13 E-value=95 Score=28.22 Aligned_cols=33 Identities=9% Similarity=0.075 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHhhccccc-chHHHHHHHHH
Q 011750 236 ISTIVIGTSLCILVSMLIRPIW-AGKDLYNLIIR 268 (478)
Q Consensus 236 l~~I~IGi~iAllVs~~i~P~~-A~~~L~~~la~ 268 (478)
++..+||++|++++..+.-|.. ....|.+.+.+
T Consensus 7 ~i~livG~iiG~~~~R~~~~~~~~q~~le~eLe~ 40 (134)
T PRK11677 7 LIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEK 40 (134)
T ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHH
Confidence 3677889999999988766652 33334444433
No 51
>PF06496 DUF1097: Protein of unknown function (DUF1097); InterPro: IPR009476 This family consists of several bacterial putative membrane proteins.
Probab=33.91 E-value=3.6e+02 Score=24.35 Aligned_cols=68 Identities=12% Similarity=0.062 Sum_probs=45.8
Q ss_pred CchHHHHHhHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHH
Q 011750 124 NAMWAIMTVVVVFENTVGATIAKCLNRVFGTLLAGFLALGVHWIASQSGEKLEPLIAGASLFLLASAATF 193 (478)
Q Consensus 124 ~g~WAvlTvvvV~qpsvGaTl~kg~~RilGTliG~~lgl~~~~l~~~~G~~~~p~ll~~~vfl~~~~a~~ 193 (478)
-+.|+..-....+=-. |...+...+=..+...|.+.|.+...+....+.. .++...+.++++++...+
T Consensus 20 l~~W~~Figwa~yfa~-G~~~~~~~~~~~~~~~Gi~~a~~~~~~~~~~~~~-~~~~~~i~v~i~~~~m~~ 87 (144)
T PF06496_consen 20 LPGWAGFIGWASYFAA-GGGKKGLKKSLASNLSGIVWAWLAILLSGLLGGN-GPLALAIVVGIFSFVMVY 87 (144)
T ss_pred chHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHcccc-HHHHHHHHHHHHHHHHHH
Confidence 5589877665554333 8888888888889999999999998887766542 244444555555444333
No 52
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=32.99 E-value=3.1e+02 Score=24.77 Aligned_cols=52 Identities=13% Similarity=0.158 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhhhHHHHHHHHHHHHHHHh
Q 011750 336 LLCNTCLRVSSNSSRVVKELAKIIKTMKKSSTIDLLVEEMNAAVKELKDDLK 387 (478)
Q Consensus 336 ~l~~~~~~l~~~~~~vL~~La~si~~m~~~~~~~~~~~~l~~A~~~L~~~i~ 387 (478)
.+...|..+-..+++++..+...=+.+.+....---+.+++..+.+++..+.
T Consensus 53 ~L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~kv~els~~L~~~~~lL~ 104 (131)
T PF10158_consen 53 ALAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEKVNELSQQLSRCQSLLN 104 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555666666655555544432111112344444444444443
No 53
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=32.80 E-value=3.1e+02 Score=26.97 Aligned_cols=18 Identities=28% Similarity=0.647 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011750 151 VFGTLLAGFLALGVHWIA 168 (478)
Q Consensus 151 ilGTliG~~lgl~~~~l~ 168 (478)
++|-++||++|+......
T Consensus 16 llg~~iGg~~G~~~~~~~ 33 (248)
T PF11368_consen 16 LLGGLIGGFIGFFIGRIG 33 (248)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467777888887776555
No 54
>COG5547 Small integral membrane protein [Function unknown]
Probab=31.79 E-value=2e+02 Score=22.52 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011750 144 IAKCLNRVFGTLLAGFLALGVHWIA 168 (478)
Q Consensus 144 l~kg~~RilGTliG~~lgl~~~~l~ 168 (478)
+.+--+|++|-++|.++|.++..+.
T Consensus 4 lk~fkypIIgglvglliAili~t~G 28 (62)
T COG5547 4 LKKFKYPIIGGLVGLLIAILILTFG 28 (62)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHH
Confidence 5667788888888888888776443
No 55
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=30.59 E-value=49 Score=29.28 Aligned_cols=23 Identities=30% Similarity=0.670 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHH-HHHhhcCC
Q 011750 151 VFGTLLAGFLALGVH-WIASQSGE 173 (478)
Q Consensus 151 ilGTliG~~lgl~~~-~l~~~~G~ 173 (478)
++|+++||++|.+.. .++|.+|.
T Consensus 8 l~G~liGgiiGa~aaLL~AP~sGk 31 (115)
T COG4980 8 LFGILIGGIIGAAAALLFAPKSGK 31 (115)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccH
Confidence 578899998888774 45565664
No 56
>PRK11660 putative transporter; Provisional
Probab=29.39 E-value=3.2e+02 Score=30.38 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHhh
Q 011750 238 TIVIGTSLCILVSML 252 (478)
Q Consensus 238 ~I~IGi~iAllVs~~ 252 (478)
.+..|++++++++.+
T Consensus 425 ~~~~gi~~Gi~~s~~ 439 (568)
T PRK11660 425 DMVIAISVGIVLASL 439 (568)
T ss_pred hHHHHHHHHHHHHHH
Confidence 333455555444443
No 57
>KOG2163 consensus Centromere/kinetochore protein zw10 involved in mitotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=27.89 E-value=6.2e+02 Score=28.87 Aligned_cols=114 Identities=17% Similarity=0.172 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Q 011750 259 GKDLYNLIIRNMDKLANSIDGLANFARWEPAHGRFNFRHPWKQYLKVGAAVRRCAYCIEALNACINSENQAPEFIKKLLC 338 (478)
Q Consensus 259 ~~~L~~~la~~l~~la~~le~L~~~a~~Ep~~g~~~~~~p~~~y~ki~~~lR~~a~~i~aL~~~l~~~~q~p~~lr~~l~ 338 (478)
.+.+++.+...-..+..+++..-+| .+-+.-++|..-..+.|||...+..++..++.-. |+.
T Consensus 533 ~ecf~kQv~~q~seL~e~l~sa~~F----------en~~~ee~~ssa~klVrQcL~qLkll~~vw~~vL--pe~------ 594 (719)
T KOG2163|consen 533 AECFEKQVTRQRSELTEYLESASIF----------ENLPAEEMSSSADKLVRQCLLQLKLLAKVWREVL--PEV------ 594 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh----------ccCcHHhhcccHHHHHHHHHHHHHHHHHHHhccc--cHH------
Confidence 3445555555555555555543333 2223335565666688999999999998887432 331
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCChhhhHHHHHHHHHHHHHHHhhccccccC
Q 011750 339 NTCLRVSSNSSRVVKELAKIIKTMKKSSTIDLLVEEMNAAVKELKDDLKSLSLSEAG 395 (478)
Q Consensus 339 ~~~~~l~~~~~~vL~~La~si~~m~~~~~~~~~~~~l~~A~~~L~~~i~~~~~~~~~ 395 (478)
--|..++.-+..+++++...+-+.+-.+. ....+...-++..++..|..|..
T Consensus 595 vYck~mc~Llnt~~~elir~V~tl~Disa-----~da~eL~dLik~vL~~~p~vfa~ 646 (719)
T KOG2163|consen 595 VYCKVMCSLLNTLLDELIRHVVTLSDISA-----NDANELADLIKRVLEVVPNVFAY 646 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhhhh-----hhhHHHHHHHHHHHHhhhhhhcC
Confidence 25777888888899999999987655442 34445555566666777766654
No 58
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=27.65 E-value=8.5e+02 Score=26.75 Aligned_cols=70 Identities=16% Similarity=0.270 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhhhhhhhccCCCchHHHHHhHHh-----------------cccChhHHHHHHHHHHHHHHHHHHHH-HHH
Q 011750 103 IALTVVSLFYYTRPLYEGVGGNAMWAIMTVVVV-----------------FENTVGATIAKCLNRVFGTLLAGFLA-LGV 164 (478)
Q Consensus 103 lA~~L~sll~~~~~~~~~l~~~g~WAvlTvvvV-----------------~qpsvGaTl~kg~~RilGTliG~~lg-l~~ 164 (478)
+-.++++.+.|..|.+.. ..+-.|+.+|.++. +.++...-.+-.-.|..+..+|.++. ++.
T Consensus 91 ip~~i~~~l~F~~p~~~~-~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~ 169 (467)
T COG2211 91 IPFAIVAVLLFITPDFSM-TGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLF 169 (467)
T ss_pred HHHHHHHHHHHcCCCccc-CcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555553221 13667777776543 12233444555566777777775444 444
Q ss_pred HHHHhhcCC
Q 011750 165 HWIASQSGE 173 (478)
Q Consensus 165 ~~l~~~~G~ 173 (478)
..+....|+
T Consensus 170 ~plv~~~g~ 178 (467)
T COG2211 170 PPLVKLFGG 178 (467)
T ss_pred HHHHHHhCC
Confidence 455555554
No 59
>COG4258 Predicted exporter [General function prediction only]
Probab=27.40 E-value=5.9e+02 Score=29.10 Aligned_cols=110 Identities=25% Similarity=0.282 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHHHHHhhhhhcc-cch---------hHHHHH
Q 011750 142 ATIAKCLNRVFGTLLAGFLALGVHW-IASQSGEKLEPLIAGASLFLLASAATFSRFIPTFK-ARF---------DYGALI 210 (478)
Q Consensus 142 aTl~kg~~RilGTliG~~lgl~~~~-l~~~~G~~~~p~ll~~~vfl~~~~a~~~~~~p~~k-~~y---------~yg~~i 210 (478)
+...+++.|.+=.++=.++++++.. .....|...|.+=+...+.++|..+.|.-||..-. ++- ..+...
T Consensus 663 a~a~rgwRrglrvllP~v~a~~~~~A~~a~aGvplnLfhllal~LvlgvG~nYalFfs~~~~~~ae~lttl~alala~lt 742 (788)
T COG4258 663 AVARRGWRRGLRVLLPSVLALGCGLAVLAMAGVPLNLFHLLALVLVLGVGINYALFFSNAGDPRAEPLTTLLALALAMLT 742 (788)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHcccchhhhhhcccCCCCchHHHHHHHHHHHHH
Confidence 3344555555544444444443321 11234543343333233444555556665554311 000 122233
Q ss_pred HHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 011750 211 FILTFSLVTVSGYRVDKLFNMAHQRISTIVIGTSLCILVSMLIRPIW 257 (478)
Q Consensus 211 f~lT~~LV~l~~~~~~~~~~~A~~Rl~~I~IGi~iAllVs~~i~P~~ 257 (478)
..+||.+..++....-+.| -+++.-|++++++..-+.-|..
T Consensus 743 TlltfgLLa~Sa~pvLssf------G~tlasGiila~vlApL~mp~~ 783 (788)
T COG4258 743 TLLTFGLLAFSATPVLSSF------GITLASGIILAFVLAPLAMPDK 783 (788)
T ss_pred HHHHHHHHHhcccHHHHHh------hHHHHHHHHHHHHHHHhcCCCc
Confidence 4455555555543322211 2456789999999988888874
No 60
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=27.29 E-value=1.6e+02 Score=22.15 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011750 149 NRVFGTLLAGFLALGVH 165 (478)
Q Consensus 149 ~RilGTliG~~lgl~~~ 165 (478)
.|++|.++|-++|+++.
T Consensus 9 ~~iiG~~~G~ila~l~l 25 (51)
T PF10031_consen 9 GKIIGGLIGLILALLIL 25 (51)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 35556666665555554
No 61
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=26.78 E-value=7.6e+02 Score=25.93 Aligned_cols=43 Identities=26% Similarity=0.377 Sum_probs=24.7
Q ss_pred chhHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHH
Q 011750 203 RFDYGALIFILTFSLVTVSGYRVDKLFNMAHQRISTIVIGTSLCIL 248 (478)
Q Consensus 203 ~y~yg~~if~lT~~LV~l~~~~~~~~~~~A~~Rl~~I~IGi~iAll 248 (478)
+...|..++.+.|+++.+...+++..-+ ..|+. +.++++++++
T Consensus 95 q~vLg~Figtfvy~l~~l~~i~~~~~~~--~p~~~-~~~a~~l~i~ 137 (371)
T PF10011_consen 95 QVVLGTFIGTFVYSLLVLIAIRSGDYGS--VPRLS-VFIALALAIL 137 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccccccc--CcchH-HHHHHHHHHH
Confidence 3456777777777888776655422111 44555 6666555544
No 62
>COG2733 Predicted membrane protein [Function unknown]
Probab=26.54 E-value=28 Score=36.94 Aligned_cols=22 Identities=27% Similarity=0.378 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 011750 148 LNRVFGTLLAGFLALGVHWIAS 169 (478)
Q Consensus 148 ~~RilGTliG~~lgl~~~~l~~ 169 (478)
+-|+=||++||++|+++..+..
T Consensus 391 ~IRiNGtvVGG~~Gllly~I~~ 412 (415)
T COG2733 391 FIRINGTVVGGIAGLLLYAISQ 412 (415)
T ss_pred EEeEcCchHHHHHHHHHHHHHh
Confidence 4488899999999999876654
No 63
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=26.28 E-value=9.1e+02 Score=26.62 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 011750 428 QIEIASRIESIVEAVEELANLA 449 (478)
Q Consensus 428 Lie~v~~~~~~~~~v~eL~~~a 449 (478)
|-+-+.++.++++.++++|+..
T Consensus 354 l~~~~~~I~~i~~~I~~IA~QT 375 (554)
T PRK15041 354 ISTSSQKIADIISVIDGIAFQT 375 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666666666665543
No 64
>COG0555 CysU ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones]
Probab=26.26 E-value=7.1e+02 Score=25.40 Aligned_cols=48 Identities=13% Similarity=0.120 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHH
Q 011750 230 NMAHQRISTIVIGTSLCILVSMLIRPIWAGKDLYNLIIRNMDKLANSI 277 (478)
Q Consensus 230 ~~A~~Rl~~I~IGi~iAllVs~~i~P~~A~~~L~~~la~~l~~la~~l 277 (478)
+..-..+.++..|+++|.++....+=++.-+.--+.+.+.++..|..+
T Consensus 129 ~~~gi~~~~t~~GVivA~~Fvs~Pf~vr~v~~~~~~id~~~EeaA~sL 176 (274)
T COG0555 129 APLGIKFAFTPLGVIVAMFFVSLPFVVRTVQPVLEEIDREYEEAARSL 176 (274)
T ss_pred cccCceEeccHHHHHHHHHHHcchhHHHHHHHHHHhccHHHHHHHHhc
Confidence 334557888999999998877666555444444444445555555544
No 65
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=26.16 E-value=3.3e+02 Score=25.36 Aligned_cols=11 Identities=9% Similarity=0.250 Sum_probs=4.8
Q ss_pred HHHHHhhhhcc
Q 011750 21 IAYHLSKMACQ 31 (478)
Q Consensus 21 ~~~~~~~~~~~ 31 (478)
|.+.+..+++.
T Consensus 15 ve~~~~ria~~ 25 (193)
T PF06738_consen 15 VEDTMQRIARA 25 (193)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 66
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=25.88 E-value=7.7e+02 Score=26.52 Aligned_cols=73 Identities=11% Similarity=0.073 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhhccCCCchH-HHHHhHHh--cccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011750 93 RKVIHCLKVGIALTVVSLFYYTRPLYEGVGGNAMW-AIMTVVVV--FENTVGATIAKCLNRVFGTLLAGFLALGVHW 166 (478)
Q Consensus 93 rr~~~AlKv~lA~~L~sll~~~~~~~~~l~~~g~W-AvlTvvvV--~qpsvGaTl~kg~~RilGTliG~~lgl~~~~ 166 (478)
+.++.++=+.+..++++..-+.+..-..++ ++.. .++|..+| .+...+..+..+..|+.-+++|+++.+++..
T Consensus 92 ~~~~i~~~vFi~~~~atf~r~~P~~k~ryd-Yg~~Vf~LTf~lV~vs~yr~~~~~~~A~~R~~~I~iGv~i~l~vsi 167 (406)
T PF11744_consen 92 EPIVIGISVFIIGFIATFVRFIPKIKARYD-YGGLVFILTFCLVAVSGYRTDEFLMLAVWRLLTIVIGVAICLLVSI 167 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHHhchhhhhhhh-HHHHHHHHHHHhheeecCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555444333322111132 3333 34444433 4556678899999999999999999998853
No 67
>COG4452 CreD Inner membrane protein involved in colicin E2 resistance [Defense mechanisms]
Probab=25.01 E-value=4.7e+02 Score=28.09 Aligned_cols=28 Identities=18% Similarity=0.101 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011750 142 ATIAKCLNRVFGTLLAGFLALGVHWIAS 169 (478)
Q Consensus 142 aTl~kg~~RilGTliG~~lgl~~~~l~~ 169 (478)
.+..|++.|.+|=.+|-...+++.|-..
T Consensus 371 ~avl~~~~~g~~f~~~L~~lygvm~glL 398 (443)
T COG4452 371 QAVLRGWRNGLLFFLALLLLYGVMFGLL 398 (443)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 3455777777777777666666655433
No 68
>PF14351 DUF4401: Domain of unknown function (DUF4401)
Probab=24.71 E-value=7.6e+02 Score=25.21 Aligned_cols=64 Identities=16% Similarity=0.250 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhccC-CCchHHHHHhHHhcccChhHHHHHHHHHHHHHHHHHHHHHH
Q 011750 97 HCLKVGIALTVVSLFYYTRPLYEGVG-GNAMWAIMTVVVVFENTVGATIAKCLNRVFGTLLAGFLALG 163 (478)
Q Consensus 97 ~AlKv~lA~~L~sll~~~~~~~~~l~-~~g~WAvlTvvvV~qpsvGaTl~kg~~RilGTliG~~lgl~ 163 (478)
|.=+.++|..++....+...+++... ....|..++++...- -......+.|++++..+......
T Consensus 58 f~~q~ala~~laG~~~~~~gl~~~~~~~~~~~l~~~~i~~~~---~~l~~~~l~rfLs~~~~~~~l~~ 122 (326)
T PF14351_consen 58 FLDQLALALFLAGQILLGFGLFDLFMSSLSVWLIFALILAVL---YFLMPDRLLRFLSAFLAAIALIG 122 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHHHHH
Confidence 55566666666654433333333221 134444444433221 22233378899966655544443
No 69
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=24.04 E-value=6.3e+02 Score=24.02 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=14.8
Q ss_pred HhcccChhHHHHHHHHHHHHHHHHHHH
Q 011750 134 VVFENTVGATIAKCLNRVFGTLLAGFL 160 (478)
Q Consensus 134 vV~qpsvGaTl~kg~~RilGTliG~~l 160 (478)
+.++|-......++. +|+++|.++
T Consensus 53 ~ll~Pf~~g~wk~t~---~G~~igi~~ 76 (173)
T PF11085_consen 53 FLLEPFALGDWKNTW---LGNLIGIVF 76 (173)
T ss_pred hhhhhhhccchhhhh---HHHHHHHHH
Confidence 567787766666654 566655543
No 70
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=23.95 E-value=9.4e+02 Score=26.01 Aligned_cols=42 Identities=14% Similarity=0.163 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 011750 209 LIFILTFSLVTVSGYRVDKLFNMAHQRISTIVIGTSLCILVSMLIRP 255 (478)
Q Consensus 209 ~if~lT~~LV~l~~~~~~~~~~~A~~Rl~~I~IGi~iAllVs~~i~P 255 (478)
.+.++|+.++.+. ..+.-...|...+++|++++.++..+.++
T Consensus 174 ~~a~~~l~~il~~-----~~~~~g~~~~~svLiGiv~G~v~a~~~~g 215 (433)
T PRK11412 174 GLSVAVMCLVLAM-----IIFLPQRIARYSLLVGTIVGWILWAFCFP 215 (433)
T ss_pred HHHHHHHHHHHHH-----HHHhhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3555555544432 22334577999999999999998654444
No 71
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=23.65 E-value=1.1e+03 Score=27.52 Aligned_cols=20 Identities=20% Similarity=0.504 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHhhcccc
Q 011750 237 STIVIGTSLCILVSMLIRPI 256 (478)
Q Consensus 237 ~~I~IGi~iAllVs~~i~P~ 256 (478)
..+.+|+++|+++++++.|.
T Consensus 835 ~~~~~gi~~~l~~~l~~lPa 854 (862)
T TIGR03480 835 ILLSLGLGLTLLCTLIFLPA 854 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45788999999999998884
No 72
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=23.44 E-value=2.8e+02 Score=20.93 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011750 147 CLNRVFGTLLAGFLALGVHWIASQSG 172 (478)
Q Consensus 147 g~~RilGTliG~~lgl~~~~l~~~~G 172 (478)
-+++=-|.++|+++|+++..+.-..|
T Consensus 3 ~~~~~~~~iiG~~~G~ila~l~l~~G 28 (51)
T PF10031_consen 3 FWKNHRGKIIGGLIGLILALLILTFG 28 (51)
T ss_pred HHHHCcchHHHHHHHHHHHHHHHHHH
Confidence 34556688999999999977666444
No 73
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=23.13 E-value=4.7e+02 Score=29.28 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 011750 148 LNRVFGTLLAGFLALGVHWIASQ 170 (478)
Q Consensus 148 ~~RilGTliG~~lgl~~~~l~~~ 170 (478)
--|+-|-+-|+++.+++..+.+.
T Consensus 320 rT~lsgi~~a~~lll~l~~~~~~ 342 (554)
T COG0659 320 RTRLSGIIHAALLLLLLLFLAPL 342 (554)
T ss_pred cChHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555544443
No 74
>PF05433 Rick_17kDa_Anti: Glycine zipper 2TM domain; InterPro: IPR008816 This domain includes a putative two transmembrane alpha-helical region that contains glycine zipper motifs []. The domain is found in several Rickettsia genus specific 17 kDa surface antigen proteins [].; GO: 0019867 outer membrane
Probab=23.09 E-value=43 Score=24.25 Aligned_cols=13 Identities=15% Similarity=0.238 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 011750 153 GTLLAGFLALGVH 165 (478)
Q Consensus 153 GTliG~~lgl~~~ 165 (478)
||++|+++|-++-
T Consensus 2 G~~~Ga~~Ga~~G 14 (42)
T PF05433_consen 2 GALIGAAVGAVAG 14 (42)
T ss_pred chHHHHHHHHHHH
Confidence 4444444444443
No 75
>PF04982 HPP: HPP family; InterPro: IPR007065 These proteins are integral membrane proteins with four transmembrane spanning helices. The most conserved region of an alignment of the proteins is a motif HPP. The function of these proteins is uncertain but they may be transporters.
Probab=23.07 E-value=5.2e+02 Score=22.70 Aligned_cols=41 Identities=12% Similarity=0.227 Sum_probs=28.1
Q ss_pred HHHHHhHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011750 127 WAIMTVVVVFENTVGATIAKCLNRVFGTLLAGFLALGVHWIAS 169 (478)
Q Consensus 127 WAvlTvvvV~qpsvGaTl~kg~~RilGTliG~~lgl~~~~l~~ 169 (478)
++..++++...|+ .-+.+=.+=+.|-++++++|+++..+..
T Consensus 6 ~gAsa~llf~~p~--sp~aqP~~vi~gh~isa~iG~~~~~~~~ 46 (120)
T PF04982_consen 6 FGASAVLLFGAPS--SPLAQPRNVIGGHLISALIGVLCVYLFG 46 (120)
T ss_pred HHHHHHHhhcCCC--CchhchHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455555564 2345667778999999999999877653
No 76
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=22.43 E-value=1.6e+02 Score=23.35 Aligned_cols=17 Identities=12% Similarity=0.348 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011750 151 VFGTLLAGFLALGVHWI 167 (478)
Q Consensus 151 ilGTliG~~lgl~~~~l 167 (478)
++||++|++++.++.++
T Consensus 53 ~~r~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 53 IWRTIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46677777777666543
No 77
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.21 E-value=2.1e+02 Score=25.44 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhhcccc
Q 011750 237 STIVIGTSLCILVSMLIRPI 256 (478)
Q Consensus 237 ~~I~IGi~iAllVs~~i~P~ 256 (478)
+..+||++|++++..+..+.
T Consensus 4 i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 4 IGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 45677888888887776655
No 78
>PF09010 AsiA: Anti-Sigma Factor A; InterPro: IPR015100 Anti-sigma factor A is a transcriptional inhibitor that inhibits sigma 70-directed transcription by weakening its interaction with the core of the host's RNA polymerase. It is an all-helical protein, composed of six helical segments and intervening loops and turns, as well as a helix-turn-helix DNA binding motif, although neither free anti-sigma factor nor anti-sigma factor bound to sigma-70 has been shown to interact directly with DNA. In solution, the protein forms a symmetric dimer of small (10.59 kDa) protomers, which are composed of helix and coil regions and are devoid of beta-strand/sheet secondary structural elements []. ; PDB: 1TKV_A 1JR5_B 1TLH_A 1TL6_A.
Probab=22.18 E-value=97 Score=26.25 Aligned_cols=41 Identities=24% Similarity=0.401 Sum_probs=31.1
Q ss_pred hHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCCCCCCCCCccccccc
Q 011750 420 SMVSFASFQI-----EIASRIESIVEAVEELANLAEFEHPEKNKQNQANI 464 (478)
Q Consensus 420 ~~~t~~slLi-----e~v~~~~~~~~~v~eL~~~a~Fk~~~~~~~~~~~~ 464 (478)
-.+++||+|| |+++.-+..++=.+|| +||.+.-.+-++.+-
T Consensus 10 eIia~aSiLIKfg~ddIl~~q~~FIaFLNEl----G~r~~~G~~~t~~sf 55 (91)
T PF09010_consen 10 EIIAVASILIKFGRDDILENQELFIAFLNEL----GFRTPTGKEFTQMSF 55 (91)
T ss_dssp HHHHHHHHHHHTTTHHHHTSHHHHHHHHHHH----T-ES-SSSE--HHHH
T ss_pred HHHHHHHHHHHcChHHHHHhHHHHHHHHHHh----cccccCCcchhHHHH
Confidence 4678999999 6888888899988998 799998888777654
No 79
>PF10428 SOG2: RAM signalling pathway protein; InterPro: IPR019487 The RAM signalling pathway regulates Ace2p transcription factor activity and cellular morphogenesis in Saccharomyces cerevisiae (Baker's yeast), and is thought to be conserved amongst eukaryotes []. This entry is found in one of the components of this pathway, the leucine-rich repeat-containing protein SOG2.
Probab=22.15 E-value=7.2e+02 Score=27.01 Aligned_cols=124 Identities=15% Similarity=0.160 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----hh--c-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCChh
Q 011750 300 KQYLKVGAAVRRCAYCIEALNACIN----SE--N-QAPEFIKKLLCNTCLRVSSNSSRVVKELAKIIKTMK---KSSTID 369 (478)
Q Consensus 300 ~~y~ki~~~lR~~a~~i~aL~~~l~----~~--~-q~p~~lr~~l~~~~~~l~~~~~~vL~~La~si~~m~---~~~~~~ 369 (478)
+.|.++..+...+...+..|...+. .. . +.++.+..+++ ++...+..+.++=+.|...+..|+ +.+...
T Consensus 303 kl~~~L~~at~~a~~vlp~l~~~~~~~~~~a~~~~~~~~~~~~k~k-~L~~~C~~~~~~T~~L~~rLs~ik~~~~ep~~~ 381 (445)
T PF10428_consen 303 KLYLALQNATDLALHVLPQLTSQFSKSARAAAQQRAIPPSLVQKWK-ELISKCNSAIDQTERLKSRLSTIKNQLKEPGGG 381 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 3455555555444444444444332 21 1 12565555442 344455555555555666666665 221001
Q ss_pred hhHHHHHHHHHHHHHHHhhccccccCCccccccccccCCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011750 370 LLVEEMNAAVKELKDDLKSLSLSEAGTSENKRTEKISSKPAAAIPLMGMISMVSFASFQIEIASRIESIVEAVEELANL 448 (478)
Q Consensus 370 ~~~~~l~~A~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~slLie~v~~~~~~~~~v~eL~~~ 448 (478)
..+-.+-.+.++.-+++.-.+.. .+-.+-..-.++-|+.+++-.|.+++.|.+.+
T Consensus 382 --~~~~~~fwe~~~~Fiks~i~l~~----------------------~iK~~~~~~~l~~dvr~~L~~l~k~tKE~t~l 436 (445)
T PF10428_consen 382 --IREQKEFWEDCNSFIKSWISLLA----------------------KIKEIMKDLPLPPDVRARLRPLQKATKEVTIL 436 (445)
T ss_pred --ccccHHHHHHHHHHHHHHHHHHH----------------------HHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 12334445666666665322211 11112222334689999999999999988764
No 80
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=22.00 E-value=4.8e+02 Score=25.40 Aligned_cols=54 Identities=17% Similarity=0.163 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhhhHHHHHHHHHHHHHHHhhccc
Q 011750 337 LCNTCLRVSSNSSRVVKELAKIIKTMKKSSTIDLLVEEMNAAVKELKDDLKSLSL 391 (478)
Q Consensus 337 l~~~~~~l~~~~~~vL~~La~si~~m~~~~~~~~~~~~l~~A~~~L~~~i~~~~~ 391 (478)
.+++..+++.++...=....-.++....-. ..-.+..++++++.|+..+...|-
T Consensus 18 ~REE~l~lsRei~r~s~~aI~~~H~~~~ee-A~~~l~~a~~~v~~Lk~~l~~~pe 71 (204)
T COG2178 18 AREEALKLSREIVRLSGEAIFLLHRGDFEE-AEKKLKKASEAVEKLKRLLAGFPE 71 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHHHHHHHHHhhhHH
Confidence 344555555544443333333333222211 122235666666677766665553
No 81
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.73 E-value=1.3e+02 Score=31.75 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---Hhhcccc
Q 011750 229 FNMAHQRISTIVIGTSLCILV---SMLIRPI 256 (478)
Q Consensus 229 ~~~A~~Rl~~I~IGi~iAllV---s~~i~P~ 256 (478)
+.+|+-|++ +.|+.+.+.- -+.+||.
T Consensus 233 lvLaIvRlI--LF~I~~il~~g~~g~W~FPN 261 (372)
T KOG2927|consen 233 LVLAIVRLI--LFGITWILTGGKHGFWLFPN 261 (372)
T ss_pred HHHHHHHHH--HHHHHHHHhCCCCceEeccc
Confidence 344666764 4444444332 3456664
No 82
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=21.59 E-value=2.8e+02 Score=23.29 Aligned_cols=10 Identities=10% Similarity=0.298 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 011750 153 GTLLAGFLAL 162 (478)
Q Consensus 153 GTliG~~lgl 162 (478)
|+++|+++++
T Consensus 28 ~~~~~a~i~~ 37 (112)
T PF14015_consen 28 LSVLGAVIPV 37 (112)
T ss_pred HHHHHHHHHH
Confidence 3334444444
No 83
>TIGR00153 conserved hypothetical protein TIGR00153. An apparent homolog with a suggested function is Pit accessory protein from Sinorhizobium meliloti, which may be involved in phosphate (Pi) transport.
Probab=21.21 E-value=7.3e+02 Score=23.70 Aligned_cols=21 Identities=10% Similarity=0.270 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 011750 427 FQIEIASRIESIVEAVEELAN 447 (478)
Q Consensus 427 lLie~v~~~~~~~~~v~eL~~ 447 (478)
.+.|++..++++.|..++.|+
T Consensus 187 ~~kei~~~le~iaD~~Edvad 207 (216)
T TIGR00153 187 ILCKFIEKLGNISDYAEDAGD 207 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777664
No 84
>COG0670 Integral membrane protein, interacts with FtsH [General function prediction only]
Probab=21.20 E-value=8.1e+02 Score=24.21 Aligned_cols=45 Identities=20% Similarity=0.355 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011750 210 IFILTFSLVTVSGYRVDKLFNMAHQRISTIVIGTSLCILVSMLIR 254 (478)
Q Consensus 210 if~lT~~LV~l~~~~~~~~~~~A~~Rl~~I~IGi~iAllVs~~i~ 254 (478)
+..++|....++++.....+.....=+..-++|++++.+||.|+.
T Consensus 123 ~t~~~F~~ls~~g~~tk~Dls~l~~~l~~aligLiiasvvn~Fl~ 167 (233)
T COG0670 123 ITALVFGALSLYGYTTKRDLSSLGSFLFMALIGLIIASLVNIFLG 167 (233)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333444444445554322233333334456889999999998764
No 85
>PRK14562 haloacid dehalogenase superfamily protein; Provisional
Probab=20.67 E-value=3.7e+02 Score=25.91 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 011750 429 IEIASRIESIVEAVEELANLA 449 (478)
Q Consensus 429 ie~v~~~~~~~~~v~eL~~~a 449 (478)
++..+-+.+|.|.+.||.+.|
T Consensus 109 v~~~dYLlGl~Dl~GEL~R~a 129 (204)
T PRK14562 109 VPEAAYLLGLADAIGELRRHI 129 (204)
T ss_pred CCHHHHHhHHHHHHhHHHHHH
Confidence 566677777777777777654
No 86
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=20.08 E-value=1.7e+03 Score=27.44 Aligned_cols=26 Identities=12% Similarity=0.024 Sum_probs=15.1
Q ss_pred HHhhcCCCchhHHHHHHHHHHHHHHH
Q 011750 84 AWDLGVDDPRKVIHCLKVGIALTVVS 109 (478)
Q Consensus 84 ~~~~~~~d~rr~~~AlKv~lA~~L~s 109 (478)
..++|+....++.|..|.-+-..+.+
T Consensus 506 ~~~vg~v~~D~~~~T~~al~~t~l~a 531 (1109)
T PRK10929 506 SSRVGKVTQDHFSLTLRTVFWSILVA 531 (1109)
T ss_pred HHhcCCcccccccccHHHHHHHHHHH
Confidence 34456655556778887655444443
Done!