Query 011750
Match_columns 478
No_of_seqs 338 out of 1219
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 14:34:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011750.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011750hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dx5_A Acriflavine resistance 42.3 2.8E+02 0.0097 31.5 14.4 21 236-256 1004-1024(1057)
2 3ne5_A Cation efflux system pr 41.7 1.5E+02 0.0052 33.7 12.0 21 236-256 1020-1040(1054)
3 3qb5_K Translin-associated pro 32.8 98 0.0033 30.2 7.4 21 429-449 182-202 (290)
4 1j1j_A Translin; testis/brain 28.7 2E+02 0.0068 27.1 8.6 21 429-449 147-167 (240)
5 4dx5_A Acriflavine resistance 23.0 8.5E+02 0.029 27.5 14.6 20 237-256 472-491 (1057)
6 4i0x_A ESAT-6-like protein MAB 18.1 2.4E+02 0.0083 21.9 6.0 60 330-390 2-67 (94)
7 4h33_A LMO2059 protein; bilaye 11.9 3.7E+02 0.013 22.6 5.8 12 124-135 47-58 (137)
8 1jr5_A 10 kDa anti-sigma facto 11.6 2.3E+02 0.0078 22.8 3.9 40 420-464 10-54 (90)
9 1xwm_A PHOU, phosphate uptake 11.4 5.8E+02 0.02 22.5 7.4 99 337-455 12-110 (217)
10 2i0m_A Phosphate transport sys 10.9 7.9E+02 0.027 21.5 9.5 98 337-454 12-109 (216)
No 1
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=42.34 E-value=2.8e+02 Score=31.47 Aligned_cols=21 Identities=10% Similarity=0.297 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHhhcccc
Q 011750 236 ISTIVIGTSLCILVSMLIRPI 256 (478)
Q Consensus 236 l~~I~IGi~iAllVs~~i~P~ 256 (478)
-..+++|+++++++++++-|.
T Consensus 1004 g~~~~~Gl~~s~~~tl~~~P~ 1024 (1057)
T 4dx5_A 1004 GTGVMGGMVTATVLAIFFVPV 1024 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345677888889998888774
No 2
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=41.70 E-value=1.5e+02 Score=33.73 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhhcccc
Q 011750 236 ISTIVIGTSLCILVSMLIRPI 256 (478)
Q Consensus 236 l~~I~IGi~iAllVs~~i~P~ 256 (478)
-+.+++|+++++++++++-|.
T Consensus 1020 ~~~~~~Gl~~s~~~tl~v~P~ 1040 (1054)
T 3ne5_A 1020 AAPMIGGMITAPLLSLFIIPA 1040 (1054)
T ss_dssp THHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHhHHHHHHHHHHHHHHH
Confidence 355778888899999888884
No 3
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J
Probab=32.80 E-value=98 Score=30.18 Aligned_cols=21 Identities=10% Similarity=0.224 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 011750 429 IEIASRIESIVEAVEELANLA 449 (478)
Q Consensus 429 ie~v~~~~~~~~~v~eL~~~a 449 (478)
++..+-|-.|.|.+.||+++|
T Consensus 182 V~~eDYLlGL~DLtGELmR~a 202 (290)
T 3qb5_K 182 VTPVDYLLGVADLTGELMRMC 202 (290)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 555566667777777777654
No 4
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A
Probab=28.68 E-value=2e+02 Score=27.11 Aligned_cols=21 Identities=14% Similarity=0.415 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 011750 429 IEIASRIESIVEAVEELANLA 449 (478)
Q Consensus 429 ie~v~~~~~~~~~v~eL~~~a 449 (478)
++.-+-|-.|.|.+.||++.|
T Consensus 147 v~~edYLlGL~DltGEL~R~a 167 (240)
T 1j1j_A 147 LDVEDYLSGVLILASELSRLS 167 (240)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 566677778888888887764
No 5
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=23.01 E-value=8.5e+02 Score=27.47 Aligned_cols=20 Identities=35% Similarity=0.634 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHhhcccc
Q 011750 237 STIVIGTSLCILVSMLIRPI 256 (478)
Q Consensus 237 ~~I~IGi~iAllVs~~i~P~ 256 (478)
+.+++|+++++++++++.|.
T Consensus 472 ~~~~~gl~~s~~~~l~~~P~ 491 (1057)
T 4dx5_A 472 ITIVSAMALSVLVALILTPA 491 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34667888888888887774
No 6
>4i0x_A ESAT-6-like protein MAB_3112; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=18.13 E-value=2.4e+02 Score=21.94 Aligned_cols=60 Identities=8% Similarity=0.072 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC------hhhhHHHHHHHHHHHHHHHhhcc
Q 011750 330 PEFIKKLLCNTCLRVSSNSSRVVKELAKIIKTMKKSST------IDLLVEEMNAAVKELKDDLKSLS 390 (478)
Q Consensus 330 p~~lr~~l~~~~~~l~~~~~~vL~~La~si~~m~~~~~------~~~~~~~l~~A~~~L~~~i~~~~ 390 (478)
|++++.. ...+.....++...|..|-..+..+.-.=. ..-.....+.+..+++..|....
T Consensus 2 peel~~~-a~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G~Aa~af~~~~~~w~~~a~~l~~~L~~i~ 67 (94)
T 4i0x_A 2 IDEVGAL-SKFAASLADQMRAGSNSLDRDVQSLFGVWKGSAADAYRSGWDEMQDGATKVWNALTDIA 67 (94)
T ss_dssp -CHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHGGGTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555543 344555666666667777666666553310 11122445555555555555443
No 7
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=11.85 E-value=3.7e+02 Score=22.61 Aligned_cols=12 Identities=42% Similarity=0.714 Sum_probs=7.8
Q ss_pred CchHHHHHhHHh
Q 011750 124 NAMWAIMTVVVV 135 (478)
Q Consensus 124 ~g~WAvlTvvvV 135 (478)
.-||+++|.-.|
T Consensus 47 a~y~~~~T~tTv 58 (137)
T 4h33_A 47 ALWWAIVTATTV 58 (137)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHcc
Confidence 457777776555
No 8
>1jr5_A 10 kDa anti-sigma factor; all-alpha, helix-turn-helix, coiled-coil, transcription; NMR {Enterobacteria phage T4} SCOP: a.150.1.1 PDB: 1tkv_A 1tl6_A 1tlh_A
Probab=11.62 E-value=2.3e+02 Score=22.85 Aligned_cols=40 Identities=23% Similarity=0.356 Sum_probs=31.7
Q ss_pred hHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCCCCCCCCCccccccc
Q 011750 420 SMVSFASFQI-----EIASRIESIVEAVEELANLAEFEHPEKNKQNQANI 464 (478)
Q Consensus 420 ~~~t~~slLi-----e~v~~~~~~~~~v~eL~~~a~Fk~~~~~~~~~~~~ 464 (478)
-..++||+|| |++..-+..++=.+|| +| .++-.+-++.+-
T Consensus 10 eIia~aSiLIKfg~ddIle~q~~FIaFLNEl----G~-t~~G~~~t~~sf 54 (90)
T 1jr5_A 10 EIITVASILIKFSREDIVENRANFIAFLNEI----GV-THEGRKLNQNSF 54 (90)
T ss_dssp HHHHHHHHHHHTTCHHHHTCHHHHHHHHHHH----TC-CSSSSCCCSHHH
T ss_pred HHHHHHHHHHHcChHHHHHhHHHHHHHHHHc----CC-CCCcchhHHHHH
Confidence 3678999999 6888888899988998 78 777777666553
No 9
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} SCOP: a.7.12.1
Probab=11.44 E-value=5.8e+02 Score=22.50 Aligned_cols=99 Identities=15% Similarity=0.208 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhhhHHHHHHHHHHHHHHHhhccccccCCccccccccccCCCCcccccc
Q 011750 337 LCNTCLRVSSNSSRVVKELAKIIKTMKKSSTIDLLVEEMNAAVKELKDDLKSLSLSEAGTSENKRTEKISSKPAAAIPLM 416 (478)
Q Consensus 337 l~~~~~~l~~~~~~vL~~La~si~~m~~~~~~~~~~~~l~~A~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (478)
++.++.+|+..+.+.|...-.++.+........ +....+.+.+|...+...-..+... .. +..
T Consensus 12 ~~~~l~~M~~~v~~ml~~a~~al~~~d~~~a~~--v~~~d~~iD~l~~~i~~~~~~~l~~-----------~~----p~~ 74 (217)
T 1xwm_A 12 LHNKLIEMGRLTEVALQQAIEAFQTQNANLAMA--VIDGDGSIDALEEEVNDFALWLIAA-----------QQ----PVA 74 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH--HHHTTHHHHHHHHHHHHHHHHHHHT-----------TC----CCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHh-----------CC----CCh
Confidence 345566777777777777766666432211011 2233445555555554322111100 00 010
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 011750 417 GMISMVSFASFQIEIASRIESIVEAVEELANLAEFEHPE 455 (478)
Q Consensus 417 ~~~~~~t~~slLie~v~~~~~~~~~v~eL~~~a~Fk~~~ 455 (478)
.-...+.-++.++..+|.+.|-...+|+.+.+....
T Consensus 75 ---~d~~~~~~~l~i~~~lERIgD~a~nIa~~~~~~~~~ 110 (217)
T 1xwm_A 75 ---TDLRRIVAAIKIASDIERIADFAVNIAKACIRIGGQ 110 (217)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 113456667888999999999999999888776543
No 10
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=10.87 E-value=7.9e+02 Score=21.47 Aligned_cols=98 Identities=10% Similarity=0.053 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhhhHHHHHHHHHHHHHHHhhccccccCCccccccccccCCCCcccccc
Q 011750 337 LCNTCLRVSSNSSRVVKELAKIIKTMKKSSTIDLLVEEMNAAVKELKDDLKSLSLSEAGTSENKRTEKISSKPAAAIPLM 416 (478)
Q Consensus 337 l~~~~~~l~~~~~~vL~~La~si~~m~~~~~~~~~~~~l~~A~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (478)
+++++.+|+..+.+.+...-.++.+........ +.+..+.+..|...|...-..+... . -+..
T Consensus 12 l~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~--v~~~d~~iD~l~~~I~~~~~~lla~-----------~----~p~a 74 (216)
T 2i0m_A 12 LEQSFLGLGQLVLETASKALLALASKDKEMAEL--IINKDHAINQGQSAIELTCARLLAL-----------Q----QPQV 74 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTTC-----------------CCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHhc-----------c----CCcH
Confidence 456677787777777777777776533211111 2345556666666665433221110 0 0011
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 011750 417 GMISMVSFASFQIEIASRIESIVEAVEELANLAEFEHP 454 (478)
Q Consensus 417 ~~~~~~t~~slLie~v~~~~~~~~~v~eL~~~a~Fk~~ 454 (478)
.=.-+..-++.++.-+|.|.|-...+|+.+.....
T Consensus 75 ---~dlr~i~~~l~i~~dlERIgD~a~~Ia~~~~~~~~ 109 (216)
T 2i0m_A 75 ---SDLRFVISIMSSCSDLERMGDHMAGIAKAVLQLKE 109 (216)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 12345566788999999999999999988876543
Done!