Query 011750
Match_columns 478
No_of_seqs 338 out of 1219
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 14:34:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011750.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011750hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j1ja_ a.118.16.1 (A:) Transl 31.0 84 0.0061 26.8 8.6 21 429-449 135-155 (217)
2 d2b0ha1 a.24.9.2 (A:1838-1973) 25.6 1.4E+02 0.01 23.1 15.4 116 255-388 9-126 (136)
3 d2r6gf1 e.70.1.1 (F:13-260) Ma 18.4 75 0.0055 28.1 5.7 13 203-215 54-66 (248)
4 d1g5za_ a.24.12.1 (A:) Outer s 13.8 47 0.0034 27.6 2.6 24 429-452 17-40 (164)
5 d1sumb_ a.7.12.1 (B:) PhoU hom 10.5 3.2E+02 0.024 22.3 7.6 94 337-450 11-104 (225)
6 d1zavu1 a.108.1.1 (U:1-30) Rib 9.8 81 0.0059 18.5 2.0 8 436-443 4-11 (30)
7 d1tlha_ a.150.1.1 (A:) Anti-si 9.5 81 0.0059 23.4 2.4 41 418-463 7-52 (89)
8 d1t72a_ a.7.12.1 (A:) Phosphat 9.4 4.2E+02 0.031 21.1 7.9 93 337-449 16-108 (215)
9 d1f1ma_ a.24.12.1 (A:) Outer s 9.2 84 0.0061 25.9 2.7 21 429-450 17-37 (162)
10 d1xwma_ a.7.12.1 (A:) Phosphat 8.8 4.3E+02 0.031 21.0 7.7 95 337-451 9-103 (212)
No 1
>d1j1ja_ a.118.16.1 (A:) Translin {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.97 E-value=84 Score=26.79 Aligned_cols=21 Identities=14% Similarity=0.415 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 011750 429 IEIASRIESIVEAVEELANLA 449 (478)
Q Consensus 429 ie~v~~~~~~~~~v~eL~~~a 449 (478)
++.-+-+..|.|.+.||++.|
T Consensus 135 v~~~dYL~Gl~DltGEL~R~a 155 (217)
T d1j1ja_ 135 LDVEDYLSGVLILASELSRLS 155 (217)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 455566777777777777665
No 2
>d2b0ha1 a.24.9.2 (A:1838-1973) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.61 E-value=1.4e+02 Score=23.12 Aligned_cols=116 Identities=11% Similarity=0.120 Sum_probs=69.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCCHH
Q 011750 255 PIWAGKDLYNLIIRNMDKLANSIDGLANFARWEPAHGRFNFRHPWKQYLKVGAAVRRCAYCIEALNACINSE--NQAPEF 332 (478)
Q Consensus 255 P~~A~~~L~~~la~~l~~la~~le~L~~~a~~Ep~~g~~~~~~p~~~y~ki~~~lR~~a~~i~aL~~~l~~~--~q~p~~ 332 (478)
|.-...+++..+.+.-+.++.....|...++-.|. +++...++++.....|-.+...- ....++
T Consensus 9 ~~~sf~~~Q~~~~~~ak~l~~~~~~lv~~a~~~~~--------------~L~~~a~~~a~~~~~L~~~~k~~A~~~~~~~ 74 (136)
T d2b0ha1 9 PEGSFVDYQTTMVRTAKAIAVTVQEMVTKSNTSPE--------------ELGPLANQLTSDYGRLASQAKPAAVAAENEE 74 (136)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSS--------------THHHHHHHHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHccCCHH--------------HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 33345667777877777777777777766654441 35666777777777766554431 122345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhhhHHHHHHHHHHHHHHHhh
Q 011750 333 IKKLLCNTCLRVSSNSSRVVKELAKIIKTMKKSSTIDLLVEEMNAAVKELKDDLKS 388 (478)
Q Consensus 333 lr~~l~~~~~~l~~~~~~vL~~La~si~~m~~~~~~~~~~~~l~~A~~~L~~~i~~ 388 (478)
.+..+.+....++..+.+++..-...-. .|. .+.....+.++.+.+.+.+.+
T Consensus 75 ~q~~ll~~ak~v~~s~~~Lv~aak~~~~---nP~-d~~~~~~L~~aAr~V~esv~~ 126 (136)
T d2b0ha1 75 IGAHIKHRVQELGHGCSALVTKAGALQC---SPS-DVYTKKELIECARRVSEKVSH 126 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---CTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCC-cHHHHHHHHHHHHHHHHHHHH
Confidence 7777777778887777776655544443 222 222235666666666665543
No 3
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=18.36 E-value=75 Score=28.05 Aligned_cols=13 Identities=23% Similarity=0.365 Sum_probs=5.6
Q ss_pred chhHHHHHHHHHH
Q 011750 203 RFDYGALIFILTF 215 (478)
Q Consensus 203 ~y~yg~~if~lT~ 215 (478)
||-+=.+++++.|
T Consensus 54 kyi~PG~~~l~~F 66 (248)
T d2r6gf1 54 RYVYPGMAGMGLF 66 (248)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ehhhhHHHHHHHH
Confidence 3444444444444
No 4
>d1g5za_ a.24.12.1 (A:) Outer surface protein C (OspC) {Lyme disease spirochete (Borrelia burgdorferi), different strains [TaxId: 139]}
Probab=13.80 E-value=47 Score=27.60 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Q 011750 429 IEIASRIESIVEAVEELANLAEFE 452 (478)
Q Consensus 429 ie~v~~~~~~~~~v~eL~~~a~Fk 452 (478)
..-|.++|.++.+++|||.+|==|
T Consensus 17 v~aVKEVetLv~SIDELA~KAIGK 40 (164)
T d1g5za_ 17 VLAVKEVETLLASIDELATKAIGK 40 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhh
Confidence 566889999999999999777544
No 5
>d1sumb_ a.7.12.1 (B:) PhoU homolog TM1734 {Thermotoga maritima [TaxId: 2336]}
Probab=10.49 E-value=3.2e+02 Score=22.26 Aligned_cols=94 Identities=14% Similarity=0.170 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhhhHHHHHHHHHHHHHHHhhccccccCCccccccccccCCCCcccccc
Q 011750 337 LCNTCLRVSSNSSRVVKELAKIIKTMKKSSTIDLLVEEMNAAVKELKDDLKSLSLSEAGTSENKRTEKISSKPAAAIPLM 416 (478)
Q Consensus 337 l~~~~~~l~~~~~~vL~~La~si~~m~~~~~~~~~~~~l~~A~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (478)
+++.+.+|+..+...+...-.++.+........ +-+..+....+...|......+... ..|.+.++
T Consensus 11 l~~~i~~M~~~v~~~l~~a~~al~~~D~~~a~~--V~~~d~~Id~l~~~I~~~~~~~la~-----------~~p~a~dl- 76 (225)
T d1sumb_ 11 FKKGVLKAGWFIEKMFRNSISSLVERNESLARE--VIADEEVVDQMEVEIQEKAMEVLGL-----------FSPIGKPL- 76 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH-----------HCCCSHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHhc-----------cCCchhHH-
Confidence 456677888877777777777777643321111 2345556666666665432221110 00001121
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 011750 417 GMISMVSFASFQIEIASRIESIVEAVEELANLAE 450 (478)
Q Consensus 417 ~~~~~~t~~slLie~v~~~~~~~~~v~eL~~~a~ 450 (478)
-+...++.++..+|.|.|-...+|+.+.
T Consensus 77 ------R~i~~~l~i~~dlERIgD~a~~Ia~~~~ 104 (225)
T d1sumb_ 77 ------LTVTAGIRVAELIENIADKCHDIAKNVL 104 (225)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344456788888888888888887654
No 6
>d1zavu1 a.108.1.1 (U:1-30) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}
Probab=9.84 E-value=81 Score=18.45 Aligned_cols=8 Identities=50% Similarity=0.945 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 011750 436 ESIVEAVE 443 (478)
Q Consensus 436 ~~~~~~v~ 443 (478)
|.|++++|
T Consensus 4 eeiv~aie 11 (30)
T d1zavu1 4 DEIIEAIE 11 (30)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444433
No 7
>d1tlha_ a.150.1.1 (A:) Anti-sigma factor AsiA {Bacteriophage T4 [TaxId: 10665]}
Probab=9.54 E-value=81 Score=23.36 Aligned_cols=41 Identities=22% Similarity=0.334 Sum_probs=29.8
Q ss_pred cchHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCCCCCCCCCcccccc
Q 011750 418 MISMVSFASFQI-----EIASRIESIVEAVEELANLAEFEHPEKNKQNQAN 463 (478)
Q Consensus 418 ~~~~~t~~slLi-----e~v~~~~~~~~~v~eL~~~a~Fk~~~~~~~~~~~ 463 (478)
+.-.+|.||+|| |++..-++.++=.+|| +|+ ++-.+=+|.+
T Consensus 7 v~eIit~aSiLIK~~~edI~~~q~~FI~FLNE~----G~r-~~G~eft~~s 52 (89)
T d1tlha_ 7 VREIITVASILIKFSREDIVENRANFIAFLNEI----GVT-HEGRKLNQNS 52 (89)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHSHHHHHHHHHHT----TCE-ETTEECCHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHhHHHHHHHHHHh----CCC-cccHHHHHhH
Confidence 345789999999 6788888888888887 788 3444444443
No 8
>d1t72a_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Aquifex aeolicus [TaxId: 63363]}
Probab=9.36 E-value=4.2e+02 Score=21.14 Aligned_cols=93 Identities=11% Similarity=0.113 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhhhHHHHHHHHHHHHHHHhhccccccCCccccccccccCCCCcccccc
Q 011750 337 LCNTCLRVSSNSSRVVKELAKIIKTMKKSSTIDLLVEEMNAAVKELKDDLKSLSLSEAGTSENKRTEKISSKPAAAIPLM 416 (478)
Q Consensus 337 l~~~~~~l~~~~~~vL~~La~si~~m~~~~~~~~~~~~l~~A~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (478)
+++++.+|+..+.+.+...-.++.+.......+ +-+.......+...|...-..+... ..+...+
T Consensus 16 l~~~l~~M~~~v~~~l~~~~~al~~~D~~~a~~--v~~~d~~id~l~~~I~~~~~~~l~~-----------~~p~a~d-- 80 (215)
T d1t72a_ 16 TKEQVIKMAKLVQEAIDKATEALNKQNVELAEE--VIKGDDTIDLLEVDIERRCIRMIAL-----------YQPEAGD-- 80 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH--HHHTHHHHHHHHHHHHHHHHHHHHH-----------HCCCHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHhh-----------cCchhHH--
Confidence 455667777777777777777776543311111 2234455666666665432111110 0000111
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 011750 417 GMISMVSFASFQIEIASRIESIVEAVEELANLA 449 (478)
Q Consensus 417 ~~~~~~t~~slLie~v~~~~~~~~~v~eL~~~a 449 (478)
.-+....+.++..+|.|.|-..++|+.+
T Consensus 81 -----lr~~~~~~~i~~~lERIgD~a~~ia~~~ 108 (215)
T d1t72a_ 81 -----LRMIMGIYKIVSDLERMGDEAENIAERA 108 (215)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233444667777888888777777655
No 9
>d1f1ma_ a.24.12.1 (A:) Outer surface protein C (OspC) {Lyme disease spirochete (Borrelia burgdorferi), different strains [TaxId: 139]}
Probab=9.21 E-value=84 Score=25.95 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC
Q 011750 429 IEIASRIESIVEAVEELANLAE 450 (478)
Q Consensus 429 ie~v~~~~~~~~~v~eL~~~a~ 450 (478)
..=|.++|.++.+++||| +|=
T Consensus 17 ~~aVKEVetLvkSIDELA-KAI 37 (162)
T d1f1ma_ 17 VLAVKEVETLLTSIDELA-KAI 37 (162)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTT
T ss_pred HHHHHHHHHHHHhHHHHH-HHH
Confidence 456889999999999998 553
No 10
>d1xwma_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Bacillus stearothermophilus [TaxId: 1422]}
Probab=8.81 E-value=4.3e+02 Score=20.99 Aligned_cols=95 Identities=16% Similarity=0.225 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhhhHHHHHHHHHHHHHHHhhccccccCCccccccccccCCCCcccccc
Q 011750 337 LCNTCLRVSSNSSRVVKELAKIIKTMKKSSTIDLLVEEMNAAVKELKDDLKSLSLSEAGTSENKRTEKISSKPAAAIPLM 416 (478)
Q Consensus 337 l~~~~~~l~~~~~~vL~~La~si~~m~~~~~~~~~~~~l~~A~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (478)
+++++.+|+..+...+...-.++.+..+....+ +-+.......++..+...-..+... .. ...
T Consensus 9 l~~~i~~M~~~v~~~l~~a~~al~~~D~~~a~~--v~~~d~~id~l~~~I~~~~~~~ia~-----------~~----p~a 71 (212)
T d1xwma_ 9 LHNKLIEMGRLTEVALQQAIEAFQTQNANLAMA--VIDGDGSIDALEEEVNDFALWLIAA-----------QQ----PVA 71 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH--HHHTTHHHHHHHHHHHHHHHHHHHT-----------TC----CCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHhh-----------hc----chh
Confidence 456667777777777777777776543311111 1234445555655655422111110 00 011
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 011750 417 GMISMVSFASFQIEIASRIESIVEAVEELANLAEF 451 (478)
Q Consensus 417 ~~~~~~t~~slLie~v~~~~~~~~~v~eL~~~a~F 451 (478)
+-+ -++..++.++..+|.+.|-...+|+.+.-
T Consensus 72 ~dl---r~~~~~~~i~~~lERIgD~a~~Ia~~~~~ 103 (212)
T d1xwma_ 72 TDL---RRIVAAIKIASDIERIADFAVNIAKACIR 103 (212)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 22334577888899999988888876543
Done!