Query 011751
Match_columns 478
No_of_seqs 297 out of 2655
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 04:50:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011751.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011751hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0922 DEAH-box RNA helicase 100.0 9.6E-91 2.1E-95 678.3 41.7 432 4-478 41-481 (674)
2 KOG0923 mRNA splicing factor A 100.0 4.7E-91 1E-95 672.9 36.0 433 4-478 255-697 (902)
3 KOG0924 mRNA splicing factor A 100.0 2E-83 4.4E-88 620.9 33.3 431 5-478 347-788 (1042)
4 COG1643 HrpA HrpA-like helicas 100.0 1.4E-81 3.1E-86 649.9 42.8 427 4-478 40-478 (845)
5 KOG0925 mRNA splicing factor A 100.0 3E-79 6.4E-84 572.7 35.5 428 3-478 36-478 (699)
6 KOG0926 DEAH-box RNA helicase 100.0 3E-76 6.5E-81 579.8 32.9 441 4-477 246-794 (1172)
7 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.1E-74 2.3E-79 608.7 41.3 415 13-478 1-426 (819)
8 PRK11664 ATP-dependent RNA hel 100.0 2.5E-74 5.5E-79 607.5 42.1 417 12-478 3-429 (812)
9 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.5E-73 3.3E-78 612.2 41.1 418 9-478 62-497 (1283)
10 PRK11131 ATP-dependent RNA hel 100.0 8.4E-73 1.8E-77 604.2 39.6 418 9-478 69-506 (1294)
11 KOG0920 ATP-dependent RNA heli 100.0 1.1E-71 2.3E-76 573.3 29.1 432 3-478 162-637 (924)
12 PHA02653 RNA helicase NPH-II; 100.0 2.1E-56 4.5E-61 459.9 34.1 391 17-478 167-594 (675)
13 PRK02362 ski2-like helicase; P 100.0 1.8E-45 3.8E-50 392.4 30.2 416 4-476 13-511 (737)
14 PRK01172 ski2-like helicase; P 100.0 3.6E-45 7.8E-50 387.5 24.7 409 12-477 20-490 (674)
15 KOG0331 ATP-dependent RNA heli 100.0 1.7E-44 3.6E-49 352.4 21.6 317 5-391 104-452 (519)
16 PRK00254 ski2-like helicase; P 100.0 1.7E-42 3.6E-47 368.7 29.2 414 3-476 12-502 (720)
17 PRK11776 ATP-dependent RNA hel 100.0 1.6E-41 3.4E-46 345.1 25.0 313 6-391 18-353 (460)
18 PTZ00110 helicase; Provisional 100.0 4.9E-41 1.1E-45 345.1 23.8 314 5-390 143-487 (545)
19 KOG0330 ATP-dependent RNA heli 100.0 1.6E-41 3.5E-46 311.4 17.5 310 5-388 74-408 (476)
20 COG0513 SrmB Superfamily II DN 100.0 7.3E-41 1.6E-45 340.5 23.8 311 5-387 42-380 (513)
21 COG1202 Superfamily II helicas 100.0 6.6E-41 1.4E-45 320.9 20.4 406 3-476 205-663 (830)
22 PRK04837 ATP-dependent RNA hel 100.0 1.2E-40 2.5E-45 335.2 22.9 315 4-390 20-365 (423)
23 PRK10590 ATP-dependent RNA hel 100.0 1.9E-40 4E-45 335.9 24.2 313 4-390 13-355 (456)
24 PLN00206 DEAD-box ATP-dependen 100.0 1.4E-40 3.1E-45 340.7 22.1 314 5-390 134-478 (518)
25 KOG0921 Dosage compensation co 100.0 2.5E-41 5.5E-46 336.9 15.2 427 5-476 369-864 (1282)
26 PRK11634 ATP-dependent RNA hel 100.0 4.2E-40 9.2E-45 341.0 24.7 313 4-389 18-354 (629)
27 COG1204 Superfamily II helicas 100.0 2E-40 4.2E-45 346.1 22.2 407 14-475 31-522 (766)
28 PRK04537 ATP-dependent RNA hel 100.0 3.5E-40 7.7E-45 339.8 23.4 314 4-389 21-366 (572)
29 PRK11192 ATP-dependent RNA hel 100.0 1E-39 2.2E-44 329.9 26.2 316 3-391 12-356 (434)
30 TIGR03817 DECH_helic helicase/ 100.0 9.8E-40 2.1E-44 344.7 26.2 316 4-385 26-384 (742)
31 KOG0333 U5 snRNP-like RNA heli 100.0 5.5E-40 1.2E-44 311.5 19.0 315 4-388 257-625 (673)
32 PRK01297 ATP-dependent RNA hel 100.0 2.2E-39 4.9E-44 330.2 24.4 313 4-388 99-443 (475)
33 PTZ00424 helicase 45; Provisio 100.0 1.9E-39 4.2E-44 325.4 22.9 309 10-391 46-378 (401)
34 KOG0328 Predicted ATP-dependen 100.0 3.9E-39 8.5E-44 283.7 19.2 308 12-392 47-378 (400)
35 TIGR00614 recQ_fam ATP-depende 100.0 7.8E-38 1.7E-42 317.7 27.2 301 11-391 8-337 (470)
36 KOG0348 ATP-dependent RNA heli 100.0 3.1E-38 6.7E-43 300.2 22.1 348 6-409 151-578 (708)
37 KOG0342 ATP-dependent RNA heli 100.0 1.2E-37 2.6E-42 294.3 22.0 313 5-389 95-439 (543)
38 PRK11057 ATP-dependent DNA hel 100.0 4.2E-37 9E-42 320.3 27.1 303 5-390 15-346 (607)
39 PLN03137 ATP-dependent DNA hel 100.0 4.7E-37 1E-41 322.7 26.9 300 14-391 460-791 (1195)
40 PRK13767 ATP-dependent helicas 100.0 1E-36 2.2E-41 328.2 29.8 312 13-385 31-398 (876)
41 KOG0345 ATP-dependent RNA heli 100.0 1.3E-37 2.9E-42 292.0 18.6 328 4-402 18-382 (567)
42 KOG0340 ATP-dependent RNA heli 100.0 4.3E-37 9.4E-42 279.1 21.2 314 5-390 20-364 (442)
43 TIGR01389 recQ ATP-dependent D 100.0 2.4E-36 5.2E-41 315.6 26.1 305 6-390 4-334 (591)
44 KOG0335 ATP-dependent RNA heli 100.0 4.3E-37 9.4E-42 295.3 16.2 310 11-385 93-442 (482)
45 KOG0341 DEAD-box protein abstr 100.0 3.6E-38 7.8E-43 288.8 5.0 315 2-388 180-529 (610)
46 KOG0338 ATP-dependent RNA heli 100.0 3.6E-37 7.8E-42 291.4 11.2 314 3-388 192-534 (691)
47 COG1201 Lhr Lhr-like helicases 100.0 3.9E-35 8.5E-40 302.4 27.2 367 4-443 13-438 (814)
48 KOG0336 ATP-dependent RNA heli 100.0 2.4E-36 5.3E-41 278.6 15.3 311 8-391 236-576 (629)
49 KOG0343 RNA Helicase [RNA proc 100.0 3.1E-36 6.8E-41 287.5 15.7 316 5-391 82-426 (758)
50 KOG0952 DNA/RNA helicase MER3/ 100.0 3.5E-35 7.5E-40 298.8 22.5 410 16-477 112-621 (1230)
51 KOG0332 ATP-dependent RNA heli 100.0 1.1E-34 2.4E-39 265.0 21.0 316 6-387 104-443 (477)
52 TIGR00580 mfd transcription-re 100.0 4.2E-34 9.1E-39 304.7 27.1 302 5-386 442-769 (926)
53 KOG0326 ATP-dependent RNA heli 100.0 1.1E-35 2.4E-40 266.1 10.4 305 11-390 104-432 (459)
54 PRK09751 putative ATP-dependen 100.0 3.4E-34 7.3E-39 313.2 22.6 290 34-381 1-379 (1490)
55 PRK10917 ATP-dependent DNA hel 100.0 2.8E-33 6.2E-38 294.6 26.8 298 9-385 256-587 (681)
56 COG0514 RecQ Superfamily II DN 100.0 9.7E-34 2.1E-38 282.2 21.1 293 15-390 18-340 (590)
57 KOG0947 Cytoplasmic exosomal R 100.0 1.1E-33 2.3E-38 284.8 18.2 322 10-387 293-723 (1248)
58 TIGR00643 recG ATP-dependent D 100.0 1.8E-32 3.8E-37 286.9 28.1 299 10-384 231-563 (630)
59 PRK10689 transcription-repair 100.0 8E-33 1.7E-37 301.1 25.9 299 7-385 593-917 (1147)
60 KOG0948 Nuclear exosomal RNA h 100.0 1.4E-33 3.1E-38 277.6 15.8 320 12-387 127-539 (1041)
61 TIGR02621 cas3_GSU0051 CRISPR- 100.0 7.4E-32 1.6E-36 279.8 26.6 299 6-376 7-378 (844)
62 KOG0339 ATP-dependent RNA heli 100.0 6.5E-33 1.4E-37 262.3 16.4 305 12-390 243-578 (731)
63 KOG0347 RNA helicase [RNA proc 100.0 5.5E-35 1.2E-39 279.0 1.3 319 2-389 191-572 (731)
64 COG1111 MPH1 ERCC4-like helica 100.0 1.8E-31 3.9E-36 254.5 24.1 310 12-387 13-481 (542)
65 KOG0350 DEAD-box ATP-dependent 100.0 2.6E-32 5.6E-37 258.2 17.5 339 7-388 152-541 (620)
66 TIGR01587 cas3_core CRISPR-ass 100.0 1.4E-31 3E-36 264.2 22.2 283 31-387 1-336 (358)
67 KOG0344 ATP-dependent RNA heli 100.0 1E-32 2.2E-37 266.9 13.3 312 10-391 154-499 (593)
68 COG1205 Distinct helicase fami 100.0 1.6E-31 3.6E-36 283.2 21.8 319 8-385 64-420 (851)
69 KOG0951 RNA helicase BRR2, DEA 100.0 1.8E-31 4E-36 274.9 20.2 404 15-468 310-820 (1674)
70 KOG0346 RNA helicase [RNA proc 100.0 1.8E-31 4E-36 248.7 16.5 312 5-388 32-411 (569)
71 COG4581 Superfamily II RNA hel 100.0 2.8E-31 6.1E-36 277.6 19.8 321 10-385 115-535 (1041)
72 KOG4284 DEAD box protein [Tran 100.0 2E-31 4.4E-36 258.7 14.3 311 7-386 40-378 (980)
73 KOG0334 RNA helicase [RNA proc 100.0 1.6E-30 3.6E-35 267.0 20.3 312 4-389 377-722 (997)
74 KOG0327 Translation initiation 100.0 6.6E-31 1.4E-35 242.4 13.4 304 13-392 47-375 (397)
75 TIGR03158 cas3_cyano CRISPR-as 100.0 3.1E-29 6.7E-34 245.1 25.0 278 18-373 1-357 (357)
76 KOG0354 DEAD-box like helicase 100.0 6.8E-29 1.5E-33 250.3 22.5 119 247-386 406-528 (746)
77 PHA02558 uvsW UvsW helicase; P 100.0 1.1E-28 2.4E-33 252.0 23.7 291 12-379 112-443 (501)
78 KOG0351 ATP-dependent DNA heli 100.0 3.6E-28 7.7E-33 256.0 18.4 301 14-391 264-596 (941)
79 PRK13766 Hef nuclease; Provisi 100.0 2.5E-26 5.4E-31 248.3 27.9 108 252-386 363-478 (773)
80 KOG0352 ATP-dependent DNA heli 99.9 2.5E-27 5.3E-32 220.4 16.0 303 16-391 22-366 (641)
81 PRK09401 reverse gyrase; Revie 99.9 4.8E-27 1E-31 256.6 20.6 304 6-373 72-429 (1176)
82 KOG0337 ATP-dependent RNA heli 99.9 5.7E-28 1.2E-32 224.4 9.5 311 5-388 34-369 (529)
83 KOG0950 DNA polymerase theta/e 99.9 2.8E-27 6.1E-32 240.4 13.7 321 12-389 221-613 (1008)
84 TIGR00603 rad25 DNA repair hel 99.9 1.7E-25 3.8E-30 230.2 25.0 292 11-388 252-608 (732)
85 PRK12898 secA preprotein trans 99.9 3.7E-25 8E-30 225.3 25.6 164 193-388 410-587 (656)
86 PRK09694 helicase Cas3; Provis 99.9 2.3E-25 5.1E-30 235.6 24.9 293 12-376 284-663 (878)
87 PRK14701 reverse gyrase; Provi 99.9 3.2E-26 6.8E-31 255.3 18.7 324 5-384 70-453 (1638)
88 COG1200 RecG RecG-like helicas 99.9 7.5E-26 1.6E-30 225.2 18.6 300 9-387 257-591 (677)
89 PRK05580 primosome assembly pr 99.9 3.1E-25 6.8E-30 232.9 23.8 310 12-383 142-545 (679)
90 TIGR03714 secA2 accessory Sec 99.9 2.4E-24 5.3E-29 221.8 26.1 161 193-387 361-537 (762)
91 PRK09200 preprotein translocas 99.9 1.6E-24 3.6E-29 225.2 25.0 162 193-387 365-541 (790)
92 TIGR00595 priA primosomal prot 99.9 7.2E-25 1.6E-29 222.2 20.2 286 33-382 1-376 (505)
93 TIGR01054 rgy reverse gyrase. 99.9 1.3E-24 2.8E-29 238.0 21.5 283 6-344 70-411 (1171)
94 COG4098 comFA Superfamily II D 99.9 8.3E-24 1.8E-28 192.3 21.2 294 15-384 98-413 (441)
95 COG1061 SSL2 DNA or RNA helica 99.9 1.8E-23 4E-28 209.5 24.3 287 9-376 31-377 (442)
96 COG1197 Mfd Transcription-repa 99.9 1.8E-23 3.8E-28 219.5 24.8 305 3-387 583-913 (1139)
97 TIGR00963 secA preprotein tran 99.9 5.3E-23 1.1E-27 210.7 25.2 162 193-387 342-517 (745)
98 KOG0353 ATP-dependent DNA heli 99.9 1.5E-23 3.3E-28 192.5 18.1 300 15-387 95-467 (695)
99 KOG0949 Predicted helicase, DE 99.9 3E-23 6.6E-28 210.2 19.8 330 13-403 510-1065(1330)
100 PRK11448 hsdR type I restricti 99.9 1.5E-21 3.2E-26 212.6 25.1 112 253-384 697-812 (1123)
101 PRK04914 ATP-dependent helicas 99.9 5.2E-20 1.1E-24 196.4 30.8 115 245-385 484-603 (956)
102 PRK12906 secA preprotein trans 99.9 4.2E-20 9E-25 191.2 23.2 162 193-387 377-553 (796)
103 COG1203 CRISPR-associated heli 99.9 1.4E-20 3.1E-25 199.7 17.5 299 14-385 195-548 (733)
104 TIGR00631 uvrb excinuclease AB 99.8 2.1E-18 4.5E-23 179.4 25.1 113 252-386 440-552 (655)
105 KOG0329 ATP-dependent RNA heli 99.8 2.8E-20 6E-25 162.6 9.0 273 10-389 60-357 (387)
106 COG1198 PriA Primosomal protei 99.8 5.2E-19 1.1E-23 182.2 19.2 308 13-382 197-598 (730)
107 PRK13104 secA preprotein trans 99.8 1.7E-17 3.7E-22 172.8 23.3 178 193-385 381-585 (896)
108 PRK12904 preprotein translocas 99.8 2.7E-17 5.8E-22 171.2 22.5 167 193-385 367-571 (830)
109 KOG0349 Putative DEAD-box RNA 99.8 1.2E-18 2.5E-23 163.1 10.8 108 253-384 504-612 (725)
110 KOG0953 Mitochondrial RNA heli 99.7 1.4E-17 3E-22 160.8 12.7 277 28-387 190-477 (700)
111 COG4096 HsdR Type I site-speci 99.7 1.6E-15 3.6E-20 153.9 25.0 332 13-417 164-578 (875)
112 KOG4150 Predicted ATP-dependen 99.7 2E-17 4.2E-22 159.7 9.7 316 7-380 279-633 (1034)
113 COG0556 UvrB Helicase subunit 99.7 2.3E-15 4.9E-20 145.3 22.2 170 191-385 386-555 (663)
114 PRK13107 preprotein translocas 99.7 1.4E-15 3.1E-20 158.1 20.4 167 193-385 386-589 (908)
115 PRK05298 excinuclease ABC subu 99.7 6.9E-16 1.5E-20 161.9 17.5 111 253-385 445-555 (652)
116 TIGR00348 hsdR type I site-spe 99.7 7.7E-15 1.7E-19 154.6 22.6 99 254-375 514-634 (667)
117 COG1110 Reverse gyrase [DNA re 99.7 7.7E-15 1.7E-19 151.4 20.9 291 5-344 73-419 (1187)
118 PF00270 DEAD: DEAD/DEAH box h 99.6 2.5E-15 5.5E-20 131.8 13.2 116 16-132 1-133 (169)
119 cd00079 HELICc Helicase superf 99.6 1.1E-15 2.3E-20 128.1 10.3 104 253-383 27-131 (131)
120 PF00271 Helicase_C: Helicase 99.6 6.5E-16 1.4E-20 116.8 4.4 72 287-376 7-78 (78)
121 PLN03142 Probable chromatin-re 99.6 1.1E-13 2.3E-18 149.0 22.6 110 253-389 486-601 (1033)
122 cd00268 DEADc DEAD-box helicas 99.6 1.4E-14 2.9E-19 131.3 12.7 122 7-129 14-154 (203)
123 PRK12899 secA preprotein trans 99.6 2.8E-13 6.1E-18 141.5 23.4 167 193-385 505-679 (970)
124 KOG0951 RNA helicase BRR2, DEA 99.6 8.6E-14 1.9E-18 145.7 18.9 322 17-398 1146-1508(1674)
125 TIGR01407 dinG_rel DnaQ family 99.6 3.3E-13 7.2E-18 146.7 23.1 183 192-383 596-811 (850)
126 PRK12900 secA preprotein trans 99.5 2.9E-14 6.2E-19 149.2 12.3 163 193-388 535-712 (1025)
127 TIGR02562 cas3_yersinia CRISPR 99.5 1.5E-11 3.2E-16 129.8 24.1 96 257-376 759-880 (1110)
128 smart00490 HELICc helicase sup 99.4 1.3E-13 2.8E-18 105.1 5.6 72 287-376 11-82 (82)
129 PRK12326 preprotein translocas 99.4 3E-11 6.5E-16 123.5 22.2 114 252-387 425-547 (764)
130 PRK07246 bifunctional ATP-depe 99.4 1.2E-10 2.6E-15 125.3 27.3 178 192-384 574-781 (820)
131 PRK13103 secA preprotein trans 99.4 4.2E-11 9.2E-16 125.3 20.1 165 193-385 386-589 (913)
132 KOG1123 RNA polymerase II tran 99.4 2.4E-12 5.2E-17 123.3 9.9 116 241-388 531-654 (776)
133 smart00487 DEXDc DEAD-like hel 99.4 1.7E-11 3.6E-16 110.1 14.2 74 11-84 5-79 (201)
134 KOG0921 Dosage compensation co 99.3 5E-14 1.1E-18 142.8 -4.6 414 9-476 401-872 (1282)
135 PF07652 Flavi_DEAD: Flaviviru 99.3 2.9E-12 6.2E-17 104.9 5.0 112 27-147 2-124 (148)
136 PRK14873 primosome assembly pr 99.3 1.3E-10 2.9E-15 121.1 17.4 92 33-132 164-271 (665)
137 PRK12903 secA preprotein trans 99.3 4.5E-10 9.8E-15 116.6 20.0 159 193-385 363-537 (925)
138 PRK08074 bifunctional ATP-depe 99.2 1.9E-09 4.2E-14 118.1 24.6 183 192-383 673-890 (928)
139 PF04851 ResIII: Type III rest 99.2 7.7E-11 1.7E-15 104.6 10.3 65 13-82 2-73 (184)
140 cd00046 DEXDc DEAD-like helica 99.2 2.1E-10 4.6E-15 96.7 12.1 55 30-84 1-55 (144)
141 CHL00122 secA preprotein trans 99.1 3.1E-09 6.7E-14 111.1 17.1 67 252-329 422-490 (870)
142 PRK12902 secA preprotein trans 99.0 1.5E-08 3.1E-13 106.0 18.5 123 193-330 376-506 (939)
143 PF02399 Herpes_ori_bp: Origin 99.0 3.3E-08 7.2E-13 102.3 20.8 293 27-388 47-389 (824)
144 KOG0387 Transcription-coupled 99.0 5.2E-08 1.1E-12 99.1 20.0 112 254-388 546-659 (923)
145 COG4889 Predicted helicase [Ge 99.0 2.4E-09 5.2E-14 109.3 10.2 106 256-379 462-576 (1518)
146 TIGR03117 cas_csf4 CRISPR-asso 99.0 6.2E-07 1.3E-11 92.8 28.1 135 237-384 454-614 (636)
147 KOG0385 Chromatin remodeling c 98.9 1.4E-07 3E-12 95.7 20.2 115 252-390 485-602 (971)
148 KOG0952 DNA/RNA helicase MER3/ 98.8 7.4E-09 1.6E-13 108.0 7.3 206 30-275 944-1174(1230)
149 KOG0390 DNA repair protein, SN 98.8 9.7E-07 2.1E-11 91.9 21.6 83 287-387 619-707 (776)
150 KOG1000 Chromatin remodeling p 98.6 3E-06 6.6E-11 82.1 17.9 77 252-337 490-568 (689)
151 smart00847 HA2 Helicase associ 98.6 2.1E-08 4.5E-13 78.1 2.7 42 436-478 1-42 (92)
152 PF04408 HA2: Helicase associa 98.6 2.7E-08 5.8E-13 78.8 2.5 41 436-477 1-41 (102)
153 KOG0384 Chromodomain-helicase 98.5 5.7E-06 1.2E-10 88.4 16.7 113 252-391 697-815 (1373)
154 PRK12901 secA preprotein trans 98.3 3.5E-06 7.6E-11 89.6 11.5 160 193-385 565-739 (1112)
155 KOG0392 SNF2 family DNA-depend 98.3 3E-05 6.5E-10 82.9 17.8 114 254-391 1340-1458(1549)
156 PF00448 SRP54: SRP54-type pro 98.3 6.2E-06 1.3E-10 73.6 11.1 93 30-129 2-94 (196)
157 PF13401 AAA_22: AAA domain; P 98.1 3.8E-06 8.2E-11 70.0 5.7 103 27-144 2-111 (131)
158 PF13245 AAA_19: Part of AAA d 98.1 9.4E-06 2E-10 60.2 6.7 55 25-79 6-62 (76)
159 COG0653 SecA Preprotein transl 98.1 5.9E-05 1.3E-09 79.2 14.8 112 252-385 427-543 (822)
160 KOG0389 SNF2 family DNA-depend 98.1 0.00019 4.1E-09 73.9 17.6 114 253-390 776-891 (941)
161 PF13604 AAA_30: AAA domain; P 98.0 4E-05 8.7E-10 68.6 10.5 62 15-78 2-65 (196)
162 COG0610 Type I site-specific r 98.0 0.00032 6.8E-09 77.3 18.9 54 30-83 274-327 (962)
163 COG1120 FepC ABC-type cobalami 98.0 1.1E-07 2.4E-12 86.9 -6.8 48 4-51 3-50 (258)
164 TIGR02768 TraA_Ti Ti-type conj 98.0 0.0012 2.6E-08 71.1 22.6 111 12-143 350-462 (744)
165 PRK12723 flagellar biosynthesi 97.9 0.00014 3E-09 71.5 12.7 88 29-129 174-265 (388)
166 PRK11747 dinG ATP-dependent DN 97.8 0.00018 3.8E-09 77.0 12.6 177 192-383 457-671 (697)
167 PRK13889 conjugal transfer rel 97.8 0.0076 1.6E-07 66.2 25.0 112 12-144 344-457 (988)
168 TIGR01447 recD exodeoxyribonuc 97.8 0.00012 2.6E-09 76.2 10.6 65 17-81 148-215 (586)
169 PF13086 AAA_11: AAA domain; P 97.8 6.2E-05 1.3E-09 69.3 7.6 67 15-81 2-75 (236)
170 COG1136 SalX ABC-type antimicr 97.8 0.00013 2.7E-09 65.7 9.1 37 17-53 19-55 (226)
171 COG1121 ZnuC ABC-type Mn/Zn tr 97.8 1.1E-05 2.3E-10 73.7 2.3 144 2-146 3-187 (254)
172 cd00009 AAA The AAA+ (ATPases 97.8 0.00027 5.9E-09 59.5 11.0 50 18-69 6-57 (151)
173 TIGR01448 recD_rel helicase, p 97.8 0.00024 5.3E-09 76.0 12.9 66 11-76 320-385 (720)
174 PRK11889 flhF flagellar biosyn 97.8 0.00041 9E-09 67.4 13.1 86 30-128 242-330 (436)
175 PRK14974 cell division protein 97.8 0.00035 7.6E-09 67.4 12.4 98 30-136 141-240 (336)
176 COG1419 FlhF Flagellar GTP-bin 97.7 0.00034 7.4E-09 67.8 11.7 103 28-144 202-306 (407)
177 PRK10875 recD exonuclease V su 97.7 0.00027 5.9E-09 73.7 11.6 66 16-81 154-221 (615)
178 PF00176 SNF2_N: SNF2 family N 97.7 8.1E-05 1.8E-09 71.4 7.2 56 27-83 23-81 (299)
179 COG1119 ModF ABC-type molybden 97.7 3.6E-05 7.9E-10 69.0 4.1 54 3-56 31-84 (257)
180 COG1116 TauB ABC-type nitrate/ 97.7 2.9E-06 6.4E-11 76.3 -2.7 125 2-127 2-157 (248)
181 COG1126 GlnQ ABC-type polar am 97.7 2E-05 4.4E-10 69.1 2.3 51 3-53 2-52 (240)
182 COG4555 NatA ABC-type Na+ tran 97.7 4.5E-05 9.8E-10 66.1 4.3 48 4-51 2-50 (245)
183 PRK13826 Dtr system oriT relax 97.7 0.01 2.2E-07 65.6 23.3 112 12-144 379-492 (1102)
184 COG2884 FtsE Predicted ATPase 97.7 2.5E-05 5.4E-10 67.1 2.5 51 4-54 2-53 (223)
185 smart00489 DEXDc3 DEAD-like he 97.6 0.00013 2.9E-09 69.4 7.2 71 10-80 4-82 (289)
186 smart00488 DEXDc2 DEAD-like he 97.6 0.00013 2.9E-09 69.4 7.2 71 10-80 4-82 (289)
187 cd03216 ABC_Carb_Monos_I This 97.6 3.7E-05 8E-10 66.7 3.1 118 11-144 8-128 (163)
188 COG4604 CeuD ABC-type enteroch 97.6 9.5E-05 2.1E-09 63.9 5.4 71 4-74 2-76 (252)
189 COG1199 DinG Rad3-related DNA 97.6 0.001 2.2E-08 71.3 14.5 181 192-384 404-615 (654)
190 PRK14722 flhF flagellar biosyn 97.6 0.00054 1.2E-08 66.9 11.0 89 27-128 135-225 (374)
191 TIGR00604 rad3 DNA repair heli 97.6 0.00038 8.2E-09 74.9 10.9 180 193-379 443-665 (705)
192 PRK06526 transposase; Provisio 97.6 0.00017 3.7E-09 67.0 7.1 40 25-66 94-133 (254)
193 COG1122 CbiO ABC-type cobalt t 97.6 4.4E-06 9.6E-11 76.3 -3.5 43 8-50 8-51 (235)
194 PRK05703 flhF flagellar biosyn 97.6 0.0011 2.4E-08 66.5 13.2 88 28-128 220-309 (424)
195 TIGR02760 TraI_TIGR conjugativ 97.6 0.037 8E-07 65.8 27.4 246 12-312 427-685 (1960)
196 PF09848 DUF2075: Uncharacteri 97.6 0.00018 3.9E-09 70.7 7.4 91 30-129 2-94 (352)
197 PRK12726 flagellar biosynthesi 97.6 0.0026 5.7E-08 61.7 14.8 91 27-128 204-295 (407)
198 COG3839 MalK ABC-type sugar tr 97.6 1.9E-06 4.2E-11 82.1 -6.4 51 1-51 1-51 (338)
199 COG1124 DppF ABC-type dipeptid 97.5 5.5E-05 1.2E-09 67.7 3.0 51 1-51 1-55 (252)
200 smart00382 AAA ATPases associa 97.5 0.00014 3E-09 60.8 5.4 42 29-72 2-43 (148)
201 PF05970 PIF1: PIF1-like helic 97.5 0.00024 5.3E-09 70.0 7.7 102 16-128 3-112 (364)
202 COG3842 PotA ABC-type spermidi 97.5 3.3E-06 7.2E-11 81.0 -5.3 126 2-127 4-163 (352)
203 cd03222 ABC_RNaseL_inhibitor T 97.5 0.001 2.2E-08 58.3 10.1 96 24-144 20-117 (177)
204 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.5 0.00041 8.9E-09 58.7 7.4 97 20-143 17-115 (144)
205 TIGR03015 pepcterm_ATPase puta 97.5 0.00085 1.8E-08 63.4 10.4 27 27-53 40-67 (269)
206 cd03238 ABC_UvrA The excision 97.4 0.001 2.2E-08 58.3 9.4 110 22-144 14-135 (176)
207 cd03223 ABCD_peroxisomal_ALDP 97.4 0.00049 1.1E-08 59.9 7.3 112 18-143 16-136 (166)
208 PRK12727 flagellar biosynthesi 97.4 0.0015 3.2E-08 66.1 11.4 90 26-128 347-438 (559)
209 PRK10416 signal recognition pa 97.4 0.003 6.5E-08 60.8 13.2 91 29-128 114-206 (318)
210 PRK14721 flhF flagellar biosyn 97.4 0.0014 3E-08 65.0 11.1 88 27-127 189-278 (420)
211 COG1127 Ttg2A ABC-type transpo 97.4 0.00025 5.3E-09 63.5 5.0 51 3-53 8-58 (263)
212 cd03230 ABC_DR_subfamily_A Thi 97.4 0.00011 2.3E-09 64.5 2.8 114 17-144 14-141 (173)
213 COG1129 MglA ABC-type sugar tr 97.4 0.00035 7.7E-09 70.0 6.5 49 2-50 7-55 (500)
214 PRK14250 phosphate ABC transpo 97.3 0.00016 3.6E-09 67.0 3.6 51 1-51 1-51 (241)
215 COG4525 TauB ABC-type taurine 97.3 6.2E-05 1.3E-09 64.9 0.6 50 1-50 1-52 (259)
216 cd03246 ABCC_Protease_Secretio 97.3 0.001 2.2E-08 58.3 8.1 115 18-144 17-142 (173)
217 COG4152 ABC-type uncharacteriz 97.3 0.00019 4E-09 64.3 3.3 142 4-145 3-177 (300)
218 COG1125 OpuBA ABC-type proline 97.3 1.8E-06 4E-11 77.3 -9.3 101 4-116 2-102 (309)
219 PRK04296 thymidine kinase; Pro 97.3 0.00044 9.6E-09 61.5 5.7 37 29-67 2-38 (190)
220 TIGR02782 TrbB_P P-type conjug 97.3 0.0023 5E-08 61.1 10.8 92 20-128 123-214 (299)
221 PRK09536 btuD corrinoid ABC tr 97.3 7.7E-05 1.7E-09 74.1 0.8 51 1-51 1-51 (402)
222 COG3845 ABC-type uncharacteriz 97.3 0.00067 1.5E-08 66.9 7.2 139 2-147 3-189 (501)
223 PRK07952 DNA replication prote 97.3 0.005 1.1E-07 56.8 12.6 92 30-148 100-191 (244)
224 PRK06731 flhF flagellar biosyn 97.3 0.0051 1.1E-07 57.6 12.7 24 29-52 75-98 (270)
225 PRK08181 transposase; Validate 97.3 0.004 8.6E-08 58.4 11.9 40 25-66 102-141 (269)
226 PF13173 AAA_14: AAA domain 97.3 0.0019 4.2E-08 53.4 8.8 27 28-54 1-27 (128)
227 PRK09544 znuC high-affinity zi 97.2 9E-05 2E-09 69.1 0.7 50 3-52 4-53 (251)
228 PF13307 Helicase_C_2: Helicas 97.2 9.6E-05 2.1E-09 64.3 0.7 121 253-382 8-144 (167)
229 COG1131 CcmA ABC-type multidru 97.2 0.00037 8E-09 66.5 4.8 142 4-145 5-183 (293)
230 cd03247 ABCC_cytochrome_bd The 97.2 9.7E-05 2.1E-09 65.1 0.8 97 18-127 17-125 (178)
231 TIGR02788 VirB11 P-type DNA tr 97.2 0.0017 3.8E-08 62.5 9.2 92 22-128 137-228 (308)
232 PRK10536 hypothetical protein; 97.2 0.0008 1.7E-08 61.7 6.4 59 12-70 57-115 (262)
233 KOG0058 Peptide exporter, ABC 97.2 0.00044 9.5E-09 71.3 5.2 45 6-50 468-515 (716)
234 PF02562 PhoH: PhoH-like prote 97.2 0.00043 9.4E-09 61.6 4.5 59 13-71 3-61 (205)
235 PRK12724 flagellar biosynthesi 97.2 0.017 3.6E-07 57.2 15.7 86 29-128 223-309 (432)
236 cd03214 ABC_Iron-Siderophores_ 97.2 0.00017 3.7E-09 63.6 1.9 119 18-144 14-143 (180)
237 COG4608 AppF ABC-type oligopep 97.2 2.6E-05 5.7E-10 71.2 -3.5 121 2-128 3-137 (268)
238 cd03213 ABCG_EPDR ABCG transpo 97.2 0.00034 7.4E-09 62.6 3.7 38 16-53 22-59 (194)
239 PRK14723 flhF flagellar biosyn 97.2 0.0048 1E-07 65.5 12.6 88 28-128 184-273 (767)
240 TIGR01425 SRP54_euk signal rec 97.2 0.0054 1.2E-07 61.0 12.4 53 30-84 101-155 (429)
241 COG1135 AbcC ABC-type metal io 97.2 0.00073 1.6E-08 62.8 5.8 48 5-52 3-55 (339)
242 PF00004 AAA: ATPase family as 97.2 0.0011 2.4E-08 54.8 6.6 22 32-53 1-22 (132)
243 PRK13537 nodulation ABC transp 97.2 0.00024 5.3E-09 68.3 2.8 49 3-51 7-55 (306)
244 COG3638 ABC-type phosphate/pho 97.2 0.00036 7.7E-09 62.3 3.6 50 2-51 2-52 (258)
245 PF05621 TniB: Bacterial TniB 97.1 0.0031 6.6E-08 59.2 9.7 89 30-129 62-156 (302)
246 cd01120 RecA-like_NTPases RecA 97.1 0.0017 3.6E-08 55.9 7.6 36 32-69 2-37 (165)
247 cd00267 ABC_ATPase ABC (ATP-bi 97.1 0.003 6.6E-08 54.3 8.9 93 20-128 16-108 (157)
248 PF00580 UvrD-helicase: UvrD/R 97.1 0.001 2.2E-08 64.2 6.6 67 16-84 2-70 (315)
249 PF02456 Adeno_IVa2: Adenoviru 97.1 0.0032 6.9E-08 58.4 9.2 42 31-72 89-130 (369)
250 TIGR03499 FlhF flagellar biosy 97.1 0.002 4.3E-08 61.1 8.3 87 28-127 193-281 (282)
251 PRK09183 transposase/IS protei 97.1 0.0043 9.4E-08 58.0 10.3 39 26-66 99-137 (259)
252 COG4618 ArpD ABC-type protease 97.1 0.00012 2.6E-09 72.1 -0.1 34 17-50 350-383 (580)
253 PRK06995 flhF flagellar biosyn 97.1 0.005 1.1E-07 62.2 11.3 87 28-127 255-343 (484)
254 cd03232 ABC_PDR_domain2 The pl 97.1 0.00036 7.9E-09 62.3 2.9 46 6-51 6-55 (192)
255 PRK11432 fbpC ferric transport 97.1 0.0003 6.5E-09 68.8 2.5 51 1-51 4-54 (351)
256 cd03229 ABC_Class3 This class 97.1 0.00053 1.1E-08 60.4 3.8 117 18-145 15-147 (178)
257 PF07517 SecA_DEAD: SecA DEAD- 97.1 0.0068 1.5E-07 56.4 11.3 82 10-96 73-154 (266)
258 TIGR00376 DNA helicase, putati 97.1 0.0015 3.2E-08 69.1 7.7 66 14-81 157-223 (637)
259 PF06862 DUF1253: Protein of u 97.1 0.0083 1.8E-07 59.7 12.4 177 191-391 215-419 (442)
260 cd03215 ABC_Carb_Monos_II This 97.1 0.0031 6.7E-08 55.7 8.6 34 19-52 16-49 (182)
261 cd01130 VirB11-like_ATPase Typ 97.0 0.006 1.3E-07 54.1 10.4 34 18-51 14-47 (186)
262 cd03228 ABCC_MRP_Like The MRP 97.0 0.0052 1.1E-07 53.7 9.8 36 18-53 17-52 (171)
263 COG0410 LivF ABC-type branched 97.0 9.6E-06 2.1E-10 72.0 -7.5 138 2-158 2-140 (237)
264 TIGR00064 ftsY signal recognit 97.0 0.013 2.8E-07 55.2 13.0 90 30-128 73-164 (272)
265 PRK13851 type IV secretion sys 97.0 0.0036 7.7E-08 60.8 9.4 47 22-71 155-201 (344)
266 PRK00771 signal recognition pa 97.0 0.0089 1.9E-07 60.0 12.4 88 30-128 96-185 (437)
267 KOG1803 DNA helicase [Replicat 97.0 0.0013 2.9E-08 66.1 6.0 64 15-80 186-250 (649)
268 PF01695 IstB_IS21: IstB-like 97.0 0.004 8.6E-08 54.7 8.3 39 26-66 44-82 (178)
269 PF05729 NACHT: NACHT domain 97.0 0.0049 1.1E-07 53.2 8.9 24 30-53 1-24 (166)
270 PRK06893 DNA replication initi 96.9 0.0049 1.1E-07 56.6 9.2 24 29-52 39-62 (229)
271 PRK11147 ABC transporter ATPas 96.9 0.00045 9.7E-09 73.5 2.6 52 1-52 1-52 (635)
272 cd03217 ABC_FeS_Assembly ABC-t 96.9 0.0011 2.4E-08 59.6 4.7 42 11-52 8-49 (200)
273 cd03237 ABC_RNaseL_inhibitor_d 96.9 0.0054 1.2E-07 57.0 9.3 120 26-145 22-162 (246)
274 PRK13900 type IV secretion sys 96.9 0.0043 9.4E-08 60.1 8.9 47 22-71 153-199 (332)
275 PRK08727 hypothetical protein; 96.9 0.01 2.2E-07 54.7 10.8 35 30-66 42-76 (233)
276 PF00437 T2SE: Type II/IV secr 96.9 0.0028 6.1E-08 59.9 7.3 86 24-128 122-207 (270)
277 PRK10867 signal recognition pa 96.9 0.016 3.6E-07 57.9 12.6 92 30-128 101-193 (433)
278 PRK15439 autoinducer 2 ABC tra 96.8 0.0013 2.9E-08 68.1 5.0 49 3-51 11-59 (510)
279 PRK06835 DNA replication prote 96.8 0.027 5.9E-07 54.4 13.3 37 28-66 182-218 (329)
280 COG3840 ThiQ ABC-type thiamine 96.8 0.0028 6E-08 54.4 5.6 26 25-50 21-46 (231)
281 TIGR03771 anch_rpt_ABC anchore 96.8 0.015 3.3E-07 53.1 11.0 28 25-52 2-29 (223)
282 KOG0391 SNF2 family DNA-depend 96.8 0.011 2.4E-07 63.7 11.0 116 252-391 1274-1391(1958)
283 TIGR02868 CydC thiol reductant 96.7 0.0052 1.1E-07 64.1 8.7 35 18-52 350-384 (529)
284 cd03233 ABC_PDR_domain1 The pl 96.7 0.0077 1.7E-07 54.2 8.7 46 7-52 7-56 (202)
285 KOG2373 Predicted mitochondria 96.7 0.00069 1.5E-08 63.5 1.7 131 14-147 258-413 (514)
286 PRK08903 DnaA regulatory inact 96.7 0.011 2.3E-07 54.3 9.7 25 28-52 41-65 (227)
287 COG4619 ABC-type uncharacteriz 96.7 0.00066 1.4E-08 57.3 1.3 53 1-53 1-53 (223)
288 cd03248 ABCC_TAP TAP, the Tran 96.7 0.014 3E-07 53.5 10.3 36 17-52 28-63 (226)
289 COG2256 MGS1 ATPase related to 96.7 0.0059 1.3E-07 58.9 7.7 28 24-51 41-70 (436)
290 PRK13833 conjugal transfer pro 96.7 0.0035 7.5E-08 60.2 6.3 50 22-71 137-186 (323)
291 PRK08084 DNA replication initi 96.7 0.0093 2E-07 55.0 8.8 38 28-67 44-81 (235)
292 TIGR03420 DnaA_homol_Hda DnaA 96.7 0.0089 1.9E-07 54.8 8.7 26 28-53 37-62 (226)
293 COG0488 Uup ATPase components 96.7 0.0021 4.5E-08 66.0 4.8 53 1-53 1-53 (530)
294 COG4181 Predicted ABC-type tra 96.6 0.0074 1.6E-07 51.3 7.0 34 18-51 25-58 (228)
295 TIGR02314 ABC_MetN D-methionin 96.6 0.00039 8.5E-09 67.7 -0.6 47 6-52 4-54 (343)
296 cd03115 SRP The signal recogni 96.6 0.031 6.7E-07 48.8 11.6 22 31-52 2-23 (173)
297 PRK10851 sulfate/thiosulfate t 96.6 0.0023 4.9E-08 62.8 4.7 48 5-52 4-51 (353)
298 PRK07003 DNA polymerase III su 96.6 0.023 5E-07 59.9 12.1 35 19-53 25-62 (830)
299 PF13555 AAA_29: P-loop contai 96.6 0.0024 5.2E-08 44.8 3.4 22 29-50 23-44 (62)
300 PRK08116 hypothetical protein; 96.6 0.047 1E-06 51.3 13.1 35 30-66 115-149 (268)
301 COG4988 CydD ABC-type transpor 96.6 0.0081 1.8E-07 60.8 8.3 137 10-147 327-505 (559)
302 PF05127 Helicase_RecD: Helica 96.6 0.0037 8.1E-08 54.2 5.1 47 33-80 1-47 (177)
303 COG4167 SapF ABC-type antimicr 96.6 0.0012 2.6E-08 56.5 2.0 50 1-50 2-60 (267)
304 PRK11607 potG putrescine trans 96.6 0.0011 2.3E-08 65.6 2.0 48 4-51 20-67 (377)
305 PRK14247 phosphate ABC transpo 96.6 0.00031 6.7E-09 65.6 -1.7 52 1-52 1-52 (250)
306 TIGR00959 ffh signal recogniti 96.6 0.035 7.5E-07 55.6 12.5 92 30-128 100-192 (428)
307 COG1101 PhnK ABC-type uncharac 96.6 0.013 2.8E-07 51.8 8.3 43 12-54 11-57 (263)
308 PRK13646 cbiO cobalt transport 96.6 0.01 2.2E-07 56.6 8.5 36 17-52 21-56 (286)
309 PRK05642 DNA replication initi 96.6 0.02 4.4E-07 52.7 10.2 36 30-67 46-81 (234)
310 PRK11153 metN DL-methionine tr 96.5 0.018 3.8E-07 56.4 10.2 34 18-51 20-53 (343)
311 PRK14087 dnaA chromosomal repl 96.5 0.027 5.8E-07 57.2 11.7 92 30-145 142-236 (450)
312 PRK00149 dnaA chromosomal repl 96.5 0.021 4.6E-07 58.2 11.1 39 30-68 149-187 (450)
313 PRK13639 cbiO cobalt transport 96.5 0.021 4.6E-07 54.0 10.4 44 8-51 6-50 (275)
314 COG1484 DnaC DNA replication p 96.5 0.053 1.2E-06 50.5 12.8 53 22-77 98-150 (254)
315 cd03300 ABC_PotA_N PotA is an 96.5 0.0027 5.8E-08 58.5 4.1 43 10-52 7-49 (232)
316 cd03250 ABCC_MRP_domain1 Domai 96.5 0.0018 3.8E-08 58.5 2.8 36 17-52 19-54 (204)
317 PRK14956 DNA polymerase III su 96.5 0.0053 1.1E-07 61.7 6.3 32 22-53 30-64 (484)
318 KOG1802 RNA helicase nonsense 96.5 0.0043 9.4E-08 63.0 5.6 66 15-81 411-476 (935)
319 PRK13894 conjugal transfer ATP 96.5 0.005 1.1E-07 59.2 5.9 92 19-128 137-229 (319)
320 cd01129 PulE-GspE PulE/GspE Th 96.5 0.024 5.1E-07 53.2 10.2 39 14-52 63-103 (264)
321 COG0396 sufC Cysteine desulfur 96.5 0.00088 1.9E-08 59.6 0.6 55 1-55 1-56 (251)
322 TIGR01420 pilT_fam pilus retra 96.5 0.0087 1.9E-07 58.5 7.6 25 27-51 120-144 (343)
323 TIGR03375 type_I_sec_LssB type 96.5 0.017 3.7E-07 62.4 10.6 34 18-51 480-513 (694)
324 COG4987 CydC ABC-type transpor 96.5 0.0017 3.8E-08 64.7 2.6 47 5-51 338-386 (573)
325 COG4586 ABC-type uncharacteriz 96.5 0.016 3.4E-07 53.2 8.4 52 18-69 39-90 (325)
326 PRK11264 putative amino-acid A 96.4 0.00044 9.5E-09 64.6 -1.5 52 1-52 1-52 (250)
327 COG0630 VirB11 Type IV secreto 96.4 0.01 2.3E-07 56.9 7.8 94 20-128 134-227 (312)
328 PRK11174 cysteine/glutathione 96.4 0.012 2.6E-07 62.3 9.0 35 19-53 366-400 (588)
329 COG1132 MdlB ABC-type multidru 96.4 0.0015 3.2E-08 68.8 2.0 46 7-52 332-378 (567)
330 PRK06921 hypothetical protein; 96.4 0.038 8.2E-07 51.9 11.2 39 28-67 116-154 (266)
331 PRK12377 putative replication 96.4 0.06 1.3E-06 49.8 12.2 36 29-66 101-136 (248)
332 TIGR01186 proV glycine betaine 96.4 0.00066 1.4E-08 66.6 -0.7 32 21-52 11-42 (363)
333 PRK08533 flagellar accessory p 96.4 0.015 3.3E-07 53.3 8.3 39 26-66 21-59 (230)
334 PRK06645 DNA polymerase III su 96.4 0.02 4.4E-07 58.5 9.8 30 24-53 35-67 (507)
335 PRK12323 DNA polymerase III su 96.4 0.036 7.8E-07 57.7 11.5 36 18-53 24-62 (700)
336 PRK14262 phosphate ABC transpo 96.4 0.00045 9.8E-09 64.5 -1.9 51 1-51 1-51 (250)
337 COG1134 TagH ABC-type polysacc 96.4 0.0014 3E-08 59.0 1.3 32 19-50 43-74 (249)
338 PRK14712 conjugal transfer nic 96.4 0.057 1.2E-06 62.0 14.0 64 13-76 834-901 (1623)
339 COG0411 LivG ABC-type branched 96.4 0.00018 3.8E-09 64.6 -4.5 47 2-48 3-49 (250)
340 PLN03073 ABC transporter F fam 96.4 0.0017 3.7E-08 69.6 2.0 48 4-51 178-225 (718)
341 PRK12402 replication factor C 96.3 0.075 1.6E-06 51.9 13.5 39 14-52 19-59 (337)
342 PRK10895 lipopolysaccharide AB 96.3 0.00041 8.8E-09 64.4 -2.5 52 1-52 1-52 (241)
343 PRK11160 cysteine/glutathione 96.3 0.0038 8.1E-08 65.8 4.5 36 17-52 354-389 (574)
344 TIGR00362 DnaA chromosomal rep 96.3 0.03 6.4E-07 56.3 10.7 38 30-67 137-174 (405)
345 PF05496 RuvB_N: Holliday junc 96.3 0.011 2.4E-07 53.0 6.7 24 30-53 51-74 (233)
346 COG1117 PstB ABC-type phosphat 96.3 0.0013 2.7E-08 57.9 0.7 48 4-51 8-55 (253)
347 PRK10522 multidrug transporter 96.3 0.032 7E-07 58.5 11.3 34 18-51 338-371 (547)
348 TIGR02858 spore_III_AA stage I 96.3 0.019 4E-07 53.9 8.5 24 30-53 112-135 (270)
349 TIGR02881 spore_V_K stage V sp 96.3 0.021 4.5E-07 53.7 8.9 22 30-51 43-64 (261)
350 TIGR00604 rad3 DNA repair heli 96.3 0.0073 1.6E-07 65.2 6.5 71 11-81 6-82 (705)
351 PRK06620 hypothetical protein; 96.3 0.015 3.2E-07 52.7 7.5 20 30-49 45-64 (214)
352 cd01124 KaiC KaiC is a circadi 96.3 0.016 3.5E-07 51.2 7.7 35 31-67 1-35 (187)
353 PF00308 Bac_DnaA: Bacterial d 96.3 0.063 1.4E-06 48.9 11.6 37 31-67 36-72 (219)
354 PRK14253 phosphate ABC transpo 96.3 0.00067 1.4E-08 63.3 -1.5 52 1-52 1-52 (249)
355 PRK14949 DNA polymerase III su 96.2 0.032 7E-07 60.0 10.7 32 22-53 28-62 (944)
356 KOG0057 Mitochondrial Fe/S clu 96.2 0.0036 7.8E-08 62.6 3.5 40 12-51 360-400 (591)
357 PRK11747 dinG ATP-dependent DN 96.2 0.014 3E-07 62.6 8.2 64 11-77 22-96 (697)
358 PRK13709 conjugal transfer nic 96.2 0.072 1.6E-06 62.0 14.2 64 12-75 965-1032(1747)
359 PRK08691 DNA polymerase III su 96.2 0.032 6.9E-07 58.6 10.3 34 19-52 25-61 (709)
360 PRK14962 DNA polymerase III su 96.2 0.023 5E-07 57.8 9.2 31 22-52 26-59 (472)
361 COG0552 FtsY Signal recognitio 96.2 0.1 2.3E-06 49.5 12.6 105 31-145 141-247 (340)
362 TIGR03796 NHPM_micro_ABC1 NHPM 96.2 0.0021 4.6E-08 69.6 1.7 36 17-52 493-528 (710)
363 PRK05973 replicative DNA helic 96.2 0.017 3.7E-07 52.8 7.2 55 22-79 57-111 (237)
364 COG2274 SunT ABC-type bacterio 96.1 0.0053 1.2E-07 65.3 4.4 34 17-50 487-520 (709)
365 PRK09087 hypothetical protein; 96.1 0.026 5.7E-07 51.6 8.4 22 29-50 44-65 (226)
366 PRK10070 glycine betaine trans 96.1 0.066 1.4E-06 53.3 11.8 30 22-51 47-76 (400)
367 PRK14088 dnaA chromosomal repl 96.1 0.033 7.1E-07 56.4 9.8 38 30-67 131-168 (440)
368 PRK08939 primosomal protein Dn 96.1 0.15 3.2E-06 48.9 13.8 26 28-53 155-180 (306)
369 TIGR02857 CydD thiol reductant 96.1 0.0048 1E-07 64.4 3.9 35 17-51 336-370 (529)
370 COG4178 ABC-type uncharacteriz 96.1 0.0075 1.6E-07 62.0 4.9 109 18-128 408-543 (604)
371 PRK13657 cyclic beta-1,2-gluca 96.1 0.024 5.3E-07 60.0 9.0 36 17-52 349-384 (588)
372 COG4148 ModC ABC-type molybdat 96.1 0.0049 1.1E-07 56.6 3.1 26 25-50 20-45 (352)
373 PRK11614 livF leucine/isoleuci 96.1 0.00064 1.4E-08 62.9 -2.7 51 2-52 4-54 (237)
374 PF12340 DUF3638: Protein of u 96.1 0.039 8.5E-07 49.8 8.8 90 6-99 15-108 (229)
375 TIGR03719 ABC_ABC_ChvD ATP-bin 96.1 0.003 6.4E-08 66.2 2.0 143 2-144 321-489 (552)
376 PRK14960 DNA polymerase III su 96.0 0.035 7.5E-07 57.9 9.5 34 19-52 24-60 (702)
377 PRK14267 phosphate ABC transpo 96.0 0.00084 1.8E-08 62.8 -2.0 51 2-52 3-53 (253)
378 PRK14958 DNA polymerase III su 96.0 0.031 6.8E-07 57.5 9.2 34 19-52 25-61 (509)
379 PRK10419 nikE nickel transport 96.0 0.00083 1.8E-08 63.4 -2.1 52 1-52 1-61 (268)
380 KOG0388 SNF2 family DNA-depend 96.0 0.052 1.1E-06 55.9 10.3 115 252-390 1042-1157(1185)
381 cd01122 GP4d_helicase GP4d_hel 96.0 0.076 1.7E-06 50.1 11.3 44 22-66 23-66 (271)
382 PRK14957 DNA polymerase III su 96.0 0.023 5E-07 58.6 8.0 33 20-52 26-61 (546)
383 cd03227 ABC_Class2 ABC-type Cl 96.0 0.039 8.5E-07 47.6 8.4 26 28-53 20-45 (162)
384 COG4962 CpaF Flp pilus assembl 96.0 0.02 4.3E-07 54.4 6.9 55 15-72 158-213 (355)
385 COG1118 CysA ABC-type sulfate/ 96.0 0.0025 5.4E-08 59.2 0.9 48 4-51 3-50 (345)
386 PRK07994 DNA polymerase III su 96.0 0.028 6.1E-07 59.0 8.6 34 19-52 25-61 (647)
387 PRK00411 cdc6 cell division co 96.0 0.017 3.8E-07 57.8 7.0 24 30-53 56-79 (394)
388 PRK10247 putative ABC transpor 96.0 0.0011 2.3E-08 60.9 -1.7 49 4-52 8-56 (225)
389 PHA02533 17 large terminase pr 96.0 0.043 9.3E-07 56.7 9.8 71 11-81 56-126 (534)
390 COG1137 YhbG ABC-type (unclass 95.9 0.00067 1.5E-08 58.9 -2.8 46 1-46 2-47 (243)
391 COG3910 Predicted ATPase [Gene 95.9 0.087 1.9E-06 45.7 9.8 28 28-55 36-63 (233)
392 KOG1805 DNA replication helica 95.9 0.019 4E-07 61.2 7.0 63 17-81 672-735 (1100)
393 COG3267 ExeA Type II secretory 95.9 0.061 1.3E-06 48.9 9.3 114 19-144 40-157 (269)
394 PRK10636 putative ABC transpor 95.9 0.0031 6.7E-08 67.1 1.3 143 2-144 311-476 (638)
395 PRK14242 phosphate transporter 95.9 0.001 2.2E-08 62.2 -2.1 49 3-51 6-54 (253)
396 KOG0060 Long-chain acyl-CoA tr 95.9 0.017 3.8E-07 58.2 6.2 30 21-50 453-482 (659)
397 cd03259 ABC_Carb_Solutes_like 95.9 0.0014 2.9E-08 59.6 -1.4 44 8-51 5-48 (213)
398 COG0553 HepA Superfamily II DN 95.8 0.021 4.5E-07 63.6 7.6 107 256-389 713-824 (866)
399 TIGR00954 3a01203 Peroxysomal 95.8 0.029 6.2E-07 60.1 8.4 35 18-52 467-501 (659)
400 PRK13342 recombination factor 95.8 0.045 9.6E-07 55.1 9.3 21 31-51 38-58 (413)
401 cd03258 ABC_MetN_methionine_tr 95.8 0.0013 2.8E-08 60.7 -1.7 47 6-52 4-54 (233)
402 TIGR03878 thermo_KaiC_2 KaiC d 95.8 0.02 4.3E-07 53.7 6.3 38 27-66 34-71 (259)
403 PRK13545 tagH teichoic acids e 95.8 0.068 1.5E-06 54.6 10.4 34 19-52 40-73 (549)
404 TIGR02315 ABC_phnC phosphonate 95.8 0.0017 3.6E-08 60.4 -1.0 46 6-51 4-50 (243)
405 PRK13539 cytochrome c biogenes 95.8 0.00078 1.7E-08 60.9 -3.1 49 4-52 3-51 (207)
406 PRK10789 putative multidrug tr 95.8 0.093 2E-06 55.3 11.9 34 18-51 330-363 (569)
407 COG4136 ABC-type uncharacteriz 95.8 0.0019 4E-08 53.5 -0.6 43 8-50 7-49 (213)
408 PRK14240 phosphate transporter 95.8 0.0012 2.7E-08 61.6 -2.0 49 3-51 3-51 (250)
409 cd03235 ABC_Metallic_Cations A 95.8 0.0017 3.7E-08 59.0 -1.0 43 9-51 5-47 (213)
410 PF01637 Arch_ATPase: Archaeal 95.8 0.051 1.1E-06 49.7 8.9 36 18-53 7-44 (234)
411 cd03226 ABC_cobalt_CbiO_domain 95.8 0.0016 3.6E-08 58.7 -1.2 44 9-52 5-49 (205)
412 PRK14961 DNA polymerase III su 95.8 0.11 2.4E-06 51.3 11.6 32 21-52 27-61 (363)
413 PRK13543 cytochrome c biogenes 95.8 0.0013 2.9E-08 59.7 -1.8 49 4-52 12-60 (214)
414 PRK11176 lipid transporter ATP 95.8 0.035 7.6E-07 58.7 8.7 36 17-52 357-392 (582)
415 PRK11823 DNA repair protein Ra 95.8 0.015 3.1E-07 59.0 5.4 90 27-129 78-167 (446)
416 PRK13409 putative ATPase RIL; 95.8 0.041 8.8E-07 57.9 8.9 120 25-146 361-501 (590)
417 PRK10938 putative molybdenum t 95.7 0.0017 3.7E-08 67.0 -1.3 52 1-52 1-52 (490)
418 PRK14963 DNA polymerase III su 95.7 0.073 1.6E-06 54.7 10.4 31 22-52 26-59 (504)
419 PRK14086 dnaA chromosomal repl 95.7 0.037 8E-07 57.5 8.2 38 30-67 315-352 (617)
420 TIGR01842 type_I_sec_PrtD type 95.7 0.044 9.5E-07 57.4 9.0 36 17-52 332-367 (544)
421 PRK14955 DNA polymerase III su 95.7 0.038 8.2E-07 55.3 8.2 32 20-51 26-60 (397)
422 PRK14964 DNA polymerase III su 95.7 0.052 1.1E-06 55.2 9.1 28 24-51 27-57 (491)
423 TIGR02928 orc1/cdc6 family rep 95.7 0.053 1.2E-06 53.6 9.2 24 426-449 326-349 (365)
424 PRK11022 dppD dipeptide transp 95.7 0.001 2.2E-08 64.6 -3.1 52 1-52 1-56 (326)
425 TIGR02760 TraI_TIGR conjugativ 95.7 0.042 9.1E-07 65.4 9.5 65 12-76 1017-1085(1960)
426 cd03296 ABC_CysA_sulfate_impor 95.7 0.0011 2.4E-08 61.4 -2.8 49 4-52 3-51 (239)
427 COG1123 ATPase components of v 95.7 0.0074 1.6E-07 61.2 2.9 33 18-50 306-338 (539)
428 PRK11124 artP arginine transpo 95.7 0.0013 2.8E-08 61.1 -2.4 49 4-52 3-51 (242)
429 PRK11054 helD DNA helicase IV; 95.7 0.026 5.6E-07 60.2 7.0 72 11-84 193-266 (684)
430 cd01123 Rad51_DMC1_radA Rad51_ 95.7 0.018 4E-07 53.0 5.3 29 26-54 16-44 (235)
431 PRK04195 replication factor C 95.7 0.095 2.1E-06 53.9 11.0 25 29-53 39-63 (482)
432 TIGR00958 3a01208 Conjugate Tr 95.7 0.042 9E-07 59.5 8.8 36 17-52 495-530 (711)
433 PRK14273 phosphate ABC transpo 95.7 0.002 4.3E-08 60.3 -1.2 50 3-52 7-56 (254)
434 cd03225 ABC_cobalt_CbiO_domain 95.6 0.0018 3.9E-08 58.7 -1.5 36 17-52 15-50 (211)
435 TIGR02203 MsbA_lipidA lipid A 95.6 0.066 1.4E-06 56.5 10.0 35 18-52 347-381 (571)
436 PRK11000 maltose/maltodextrin 95.6 0.001 2.2E-08 65.7 -3.4 51 1-51 1-51 (369)
437 KOG0989 Replication factor C, 95.6 0.076 1.6E-06 49.6 8.9 34 18-51 40-79 (346)
438 TIGR02323 CP_lyasePhnK phospho 95.6 0.0018 3.9E-08 60.5 -1.6 49 4-52 4-52 (253)
439 PRK14274 phosphate ABC transpo 95.6 0.0012 2.5E-08 62.1 -3.0 50 3-52 12-61 (259)
440 cd01131 PilT Pilus retraction 95.6 0.015 3.3E-07 52.1 4.4 22 31-52 3-24 (198)
441 cd03265 ABC_DrrA DrrA is the A 95.6 0.0014 3.1E-08 59.8 -2.3 42 10-51 7-48 (220)
442 PRK11650 ugpC glycerol-3-phosp 95.6 0.0012 2.6E-08 64.8 -3.0 52 1-52 1-53 (356)
443 PRK09111 DNA polymerase III su 95.6 0.086 1.9E-06 55.3 10.4 33 20-52 34-69 (598)
444 cd03301 ABC_MalK_N The N-termi 95.6 0.0015 3.2E-08 59.4 -2.3 44 9-52 6-49 (213)
445 PRK13652 cbiO cobalt transport 95.6 0.0012 2.6E-08 62.7 -3.0 52 1-52 1-53 (277)
446 PRK13536 nodulation factor exp 95.6 0.0011 2.3E-08 64.7 -3.4 50 3-52 41-90 (340)
447 cd01393 recA_like RecA is a b 95.6 0.029 6.2E-07 51.4 6.3 29 26-54 16-44 (226)
448 cd03263 ABC_subfamily_A The AB 95.6 0.0017 3.7E-08 59.3 -1.9 45 8-52 5-51 (220)
449 TIGR02524 dot_icm_DotB Dot/Icm 95.6 0.023 4.9E-07 55.7 5.8 24 28-51 133-156 (358)
450 PRK10790 putative multidrug tr 95.6 0.099 2.1E-06 55.4 11.2 35 18-52 356-390 (592)
451 PHA02544 44 clamp loader, smal 95.6 0.13 2.8E-06 49.8 11.1 34 18-51 29-65 (316)
452 PRK13540 cytochrome c biogenes 95.6 0.0011 2.4E-08 59.6 -3.2 47 6-52 4-50 (200)
453 TIGR01192 chvA glucan exporter 95.6 0.05 1.1E-06 57.5 8.8 35 18-52 350-384 (585)
454 PRK14261 phosphate ABC transpo 95.6 0.0015 3.3E-08 61.1 -2.3 49 3-51 6-54 (253)
455 PRK14268 phosphate ABC transpo 95.6 0.0014 3.1E-08 61.5 -2.5 49 4-52 13-61 (258)
456 TIGR01846 type_I_sec_HlyB type 95.6 0.052 1.1E-06 58.7 9.1 35 18-52 472-506 (694)
457 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.6 0.0014 3.1E-08 59.7 -2.4 36 17-52 18-53 (218)
458 PRK14239 phosphate transporter 95.6 0.0016 3.5E-08 60.9 -2.2 49 3-51 5-53 (252)
459 TIGR02237 recomb_radB DNA repa 95.6 0.019 4.2E-07 51.9 5.0 39 27-67 10-48 (209)
460 cd03257 ABC_NikE_OppD_transpor 95.5 0.002 4.3E-08 59.2 -1.6 36 17-52 19-54 (228)
461 PLN03232 ABC transporter C fam 95.5 0.011 2.3E-07 69.2 4.0 150 4-198 1235-1427(1495)
462 TIGR00596 rad1 DNA repair prot 95.5 0.026 5.6E-07 60.9 6.5 46 231-276 268-317 (814)
463 PRK10744 pstB phosphate transp 95.5 0.0017 3.6E-08 61.1 -2.2 48 5-52 15-62 (260)
464 cd03219 ABC_Mj1267_LivG_branch 95.5 0.0018 3.9E-08 59.8 -1.9 44 8-51 5-48 (236)
465 TIGR02880 cbbX_cfxQ probable R 95.5 0.13 2.7E-06 49.0 10.6 22 29-50 58-79 (284)
466 CHL00176 ftsH cell division pr 95.5 0.056 1.2E-06 57.1 8.8 24 30-53 217-240 (638)
467 PRK15093 antimicrobial peptide 95.5 0.0014 3.1E-08 63.7 -2.8 52 1-52 1-56 (330)
468 PF00005 ABC_tran: ABC transpo 95.5 0.008 1.7E-07 50.2 2.1 25 26-50 8-32 (137)
469 cd03224 ABC_TM1139_LivF_branch 95.5 0.0016 3.4E-08 59.7 -2.4 42 10-51 7-48 (222)
470 PLN03130 ABC transporter C fam 95.5 0.019 4E-07 67.5 5.7 35 17-51 1253-1287(1622)
471 TIGR02204 MsbA_rel ABC transpo 95.5 0.053 1.1E-06 57.3 8.7 35 18-52 355-389 (576)
472 PRK13538 cytochrome c biogenes 95.5 0.0012 2.5E-08 59.6 -3.3 45 8-52 6-50 (204)
473 cd00820 PEPCK_HprK Phosphoenol 95.5 0.0096 2.1E-07 47.0 2.3 26 25-50 11-36 (107)
474 cd03281 ABC_MSH5_euk MutS5 hom 95.5 0.014 3E-07 52.9 3.7 22 30-51 30-51 (213)
475 TIGR02673 FtsE cell division A 95.5 0.0021 4.5E-08 58.5 -1.7 46 7-52 5-51 (214)
476 TIGR01978 sufC FeS assembly AT 95.5 0.0019 4.2E-08 60.0 -1.9 44 9-52 6-49 (243)
477 cd03266 ABC_NatA_sodium_export 95.5 0.0017 3.7E-08 59.2 -2.3 46 7-52 5-54 (218)
478 PRK14251 phosphate ABC transpo 95.5 0.0017 3.7E-08 60.6 -2.3 50 3-52 4-53 (251)
479 PRK11231 fecE iron-dicitrate t 95.5 0.0014 3.1E-08 61.3 -2.9 49 4-52 3-51 (255)
480 PRK11247 ssuB aliphatic sulfon 95.5 0.0015 3.3E-08 61.1 -2.7 47 6-52 15-61 (257)
481 cd03218 ABC_YhbG The ABC trans 95.5 0.0021 4.5E-08 59.3 -1.8 44 9-52 6-49 (232)
482 PRK14969 DNA polymerase III su 95.5 0.072 1.6E-06 55.2 9.3 34 19-52 25-61 (527)
483 PRK11831 putative ABC transpor 95.5 0.0011 2.3E-08 62.7 -3.7 50 3-52 7-56 (269)
484 PRK11701 phnK phosphonate C-P 95.5 0.0018 4E-08 60.7 -2.2 50 3-52 6-55 (258)
485 PF00931 NB-ARC: NB-ARC domain 95.5 0.05 1.1E-06 51.8 7.7 99 20-129 6-112 (287)
486 cd03260 ABC_PstB_phosphate_tra 95.4 0.0017 3.7E-08 59.6 -2.4 45 9-53 6-50 (227)
487 COG1199 DinG Rad3-related DNA 95.4 0.039 8.4E-07 59.3 7.5 68 8-78 9-82 (654)
488 TIGR03608 L_ocin_972_ABC putat 95.4 0.002 4.3E-08 58.2 -2.0 36 17-52 12-47 (206)
489 cd03262 ABC_HisP_GlnQ_permease 95.4 0.0018 3.9E-08 58.8 -2.3 42 11-52 8-49 (213)
490 COG4133 CcmA ABC-type transpor 95.4 0.0058 1.2E-07 52.8 0.9 34 17-50 16-49 (209)
491 TIGR02238 recomb_DMC1 meiotic 95.4 0.026 5.6E-07 54.3 5.5 40 27-66 94-137 (313)
492 PRK09984 phosphonate/organopho 95.4 0.0019 4E-08 60.8 -2.3 50 3-52 4-53 (262)
493 PRK14248 phosphate ABC transpo 95.4 0.0018 3.8E-08 61.2 -2.5 47 5-51 23-69 (268)
494 TIGR03411 urea_trans_UrtD urea 95.4 0.0017 3.8E-08 60.2 -2.5 49 4-52 3-51 (242)
495 PRK14243 phosphate transporter 95.4 0.0021 4.5E-08 60.6 -2.0 48 4-51 11-58 (264)
496 TIGR03265 PhnT2 putative 2-ami 95.4 0.0012 2.5E-08 64.8 -3.9 52 1-52 2-53 (353)
497 PF05707 Zot: Zonular occluden 95.4 0.12 2.5E-06 46.1 9.3 22 31-52 2-24 (193)
498 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.4 0.0031 6.7E-08 57.8 -0.8 46 7-52 26-71 (224)
499 PTZ00112 origin recognition co 95.4 0.17 3.6E-06 54.4 11.5 20 31-50 783-802 (1164)
500 PRK14241 phosphate transporter 95.4 0.0018 3.9E-08 60.8 -2.5 49 4-52 5-53 (258)
No 1
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.6e-91 Score=678.30 Aligned_cols=432 Identities=59% Similarity=0.951 Sum_probs=416.4
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHh
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (478)
..+..++..+|++.+..+++..+.+++.++|+|+|||||||++|+++.++++..+|. |.|++|+|.++..+++|++.+.
T Consensus 41 ~~i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~-I~~TQPRRVAavslA~RVAeE~ 119 (674)
T KOG0922|consen 41 LSIQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGK-IACTQPRRVAAVSLAKRVAEEM 119 (674)
T ss_pred cCHHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCc-EEeecCchHHHHHHHHHHHHHh
Confidence 467788899999999999999999999999999999999999999999999998876 9999999999999999999999
Q ss_pred CCcCCCEEEEEEeecccCChhhhHH---------HHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccC
Q 011751 84 GVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADG 154 (478)
Q Consensus 84 ~~~~~~~vg~~~~~~~~~~~~~~~~---------~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~ 154 (478)
+..+|..|||.++++..++..|+++ +++.++.++++++||+||||||+..+|+++++||++..+|
T Consensus 120 ~~~lG~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R------ 193 (674)
T KOG0922|consen 120 GCQLGEEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKR------ 193 (674)
T ss_pred CCCcCceeeeEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcC------
Confidence 9999999999999999988877664 7888999999999999999999999999999999999988
Q ss_pred CCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChhHHHhhhCCCCeEEeCCccccceEEecCCCC
Q 011751 155 HSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPE 234 (478)
Q Consensus 155 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (478)
++.++|+||||+|.+.|++||++++++.++|+.+|+++.|...+.
T Consensus 194 -----------------------------------~~LklIimSATlda~kfS~yF~~a~i~~i~GR~fPVei~y~~~p~ 238 (674)
T KOG0922|consen 194 -----------------------------------PDLKLIIMSATLDAEKFSEYFNNAPILTIPGRTFPVEILYLKEPT 238 (674)
T ss_pred -----------------------------------CCceEEEEeeeecHHHHHHHhcCCceEeecCCCCceeEEeccCCc
Confidence 889999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCcc
Q 011751 235 PDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFR 314 (478)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~ 314 (478)
.+|++..+.+++++|..+++|.||||+++.++++.+++.|.+.......+.+. .+.++||.|+.+++.++++..+.|.+
T Consensus 239 ~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~-~~lply~aL~~e~Q~rvF~p~p~g~R 317 (674)
T KOG0922|consen 239 ADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPE-LILPLYGALPSEEQSRVFDPAPPGKR 317 (674)
T ss_pred hhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcc-eeeeecccCCHHHhhccccCCCCCcc
Confidence 99999999999999999999999999999999999999999987766655544 78899999999999999999999999
Q ss_pred EEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCCCCeEEEecCHhhHhcccC
Q 011751 315 KVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKLED 394 (478)
Q Consensus 315 ~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~ 394 (478)
||++|||++|.+++||+|.||||+|+.+.+.|+|..|+..+...|+|+++..||+|||||.++|+||+||++++|++|++
T Consensus 318 KvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~~~~~ 397 (674)
T KOG0922|consen 318 KVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYDKMPL 397 (674)
T ss_pred eEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccCchHHHHHHHHcCCCCCCCccCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHhccCCCCHhhhchh
Q 011751 395 STKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSKAL 474 (478)
Q Consensus 395 ~~~pei~~~~l~~~~l~~~~~~~~~~~~~~~~~~p~~~~l~~al~~L~~~g~l~~~~~~t~~lG~~~~~~~~~p~~~~~l 474 (478)
...|||.+.+|...+|++|++|+.|+..|+|++||+.+++..|++.|..+||||++|.+|.|+|+.|+.+|++|.++|+|
T Consensus 398 ~~~PEI~R~~Ls~~vL~Lkalgi~d~l~F~f~d~P~~~~l~~AL~~L~~lgald~~g~lt~p~G~~ma~~Pl~p~lsk~l 477 (674)
T KOG0922|consen 398 QTVPEIQRVNLSSAVLQLKALGINDPLRFPFIDPPPPEALEEALEELYSLGALDDRGKLTSPLGRQMAELPLEPHLSKML 477 (674)
T ss_pred CCCCceeeechHHHHHHHHhcCCCCcccCCCCCCCChHHHHHHHHHHHhcCcccCcCCcCchHHhhhhhcCCCcchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred eecC
Q 011751 475 IVAE 478 (478)
Q Consensus 475 ~~~~ 478 (478)
+.|.
T Consensus 478 l~s~ 481 (674)
T KOG0922|consen 478 LKSS 481 (674)
T ss_pred hhcc
Confidence 9873
No 2
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.7e-91 Score=672.86 Aligned_cols=433 Identities=56% Similarity=0.931 Sum_probs=420.2
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHh
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (478)
.++...|+.+|++++..+++.++.++++++|+|.|||||||++|+++.+.++..+++.|.|++|+|.+|.+++.|++++.
T Consensus 255 ~~iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EM 334 (902)
T KOG0923|consen 255 ESIEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEM 334 (902)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHh
Confidence 45778899999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred CCcCCCEEEEEEeecccCChhhhHH---------HHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccC
Q 011751 84 GVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADG 154 (478)
Q Consensus 84 ~~~~~~~vg~~~~~~~~~~~~~~~~---------~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~ 154 (478)
+..+|..|||.++++++++..+.++ +++.++.|..++++||||||||+.++|+++++++.+...|
T Consensus 335 gvkLG~eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~R------ 408 (902)
T KOG0923|consen 335 GVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFR------ 408 (902)
T ss_pred CcccccccceEEEeccccCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhC------
Confidence 9999999999999999988777654 7888999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChhHHHhhhCCCCeEEeCCccccceEEecCCCC
Q 011751 155 HSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPE 234 (478)
Q Consensus 155 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (478)
++++++++|||+|++.|..||+++|++.++++.+||+++|...|+
T Consensus 409 -----------------------------------pdLKllIsSAT~DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~PE 453 (902)
T KOG0923|consen 409 -----------------------------------PDLKLLISSATMDAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAPE 453 (902)
T ss_pred -----------------------------------CcceEEeeccccCHHHHHHhccCCcEEeccCcccceeeecccCCc
Confidence 899999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCcc
Q 011751 235 PDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFR 314 (478)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~ 314 (478)
.+|+++++.++++++.+++.|.||||+.+.++++.+...|.+.+..+.+....+-+.++|++||.+.+.+||++.++|.+
T Consensus 454 AdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaR 533 (902)
T KOG0923|consen 454 ADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGAR 533 (902)
T ss_pred hhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCce
Confidence 99999999999999999999999999999999999999999999888888889999999999999999999999999999
Q ss_pred EEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCCCCeEEEecCHhhHhc-cc
Q 011751 315 KVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDK-LE 393 (478)
Q Consensus 315 ~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~-~~ 393 (478)
||++|||++|.+++|++|.||||.|+++.+.|+|++|+..+...|+|+++..||+|||||.|+|+||+||+...|.+ +.
T Consensus 534 KVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~eLE 613 (902)
T KOG0923|consen 534 KVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKCFRLYTAWAYEHELE 613 (902)
T ss_pred eEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCceEEeechhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987 78
Q ss_pred CCCCCcccccCchHHHHHHHHcCCCCCCCccCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHhccCCCCHhhhch
Q 011751 394 DSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSKA 473 (478)
Q Consensus 394 ~~~~pei~~~~l~~~~l~~~~~~~~~~~~~~~~~~p~~~~l~~al~~L~~~g~l~~~~~~t~~lG~~~~~~~~~p~~~~~ 473 (478)
..+.|||.+.+|.+++|.+|++|+.++..|+|++||+.++|..||+.|..+|||+..|++|. +|+.|+++|+||.++||
T Consensus 614 ~~t~PEIqRtnL~nvVL~LkSLGI~Dl~~FdFmDpPp~etL~~aLE~LyaLGALn~~GeLTk-~GrrMaEfP~dPmlsKm 692 (902)
T KOG0923|consen 614 EMTVPEIQRTNLGNVVLLLKSLGIHDLIHFDFLDPPPTETLLKALEQLYALGALNHLGELTK-LGRRMAEFPVDPMLSKM 692 (902)
T ss_pred cCCCcceeeccchhHHHHHHhcCcchhcccccCCCCChHHHHHHHHHHHHhhccccccchhh-hhhhhhhcCCCHHHHhH
Confidence 88889999999999999999999999999999999999999999999999999999999998 99999999999999999
Q ss_pred heecC
Q 011751 474 LIVAE 478 (478)
Q Consensus 474 l~~~~ 478 (478)
|+.|+
T Consensus 693 i~as~ 697 (902)
T KOG0923|consen 693 IVASE 697 (902)
T ss_pred Hhhhc
Confidence 99763
No 3
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-83 Score=620.91 Aligned_cols=431 Identities=53% Similarity=0.901 Sum_probs=409.7
Q ss_pred hHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhC
Q 011751 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (478)
Q Consensus 5 ~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (478)
.+.+++..+|++..+.+++..|.++++++|+|.|||||||++++++++.++..+| .|.|++|+|.++..++++++.+.+
T Consensus 347 ~i~eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~G-mIGcTQPRRvAAiSVAkrVa~EM~ 425 (1042)
T KOG0924|consen 347 SIREQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNG-MIGCTQPRRVAAISVAKRVAEEMG 425 (1042)
T ss_pred hHHHHHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCC-eeeecCchHHHHHHHHHHHHHHhC
Confidence 4678899999999999999999999999999999999999999999999998766 799999999999999999999999
Q ss_pred CcCCCEEEEEEeecccCChhhhHH---------HHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccCC
Q 011751 85 VELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGH 155 (478)
Q Consensus 85 ~~~~~~vg~~~~~~~~~~~~~~~~---------~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~~ 155 (478)
..+|..|||.++++..++..+.++ +.+.+..+.++++||+||||||+..+|++++++|.++.+|
T Consensus 426 ~~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larR------- 498 (1042)
T KOG0924|consen 426 VTLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARR------- 498 (1042)
T ss_pred CccccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhh-------
Confidence 999999999999999988777664 6667788999999999999999999999999999999988
Q ss_pred CCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChhHHHhhhCCCCeEEeCCccccceEEecCCCCc
Q 011751 156 SNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEP 235 (478)
Q Consensus 156 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (478)
.++++|.+|||+|++.|++|||++|.+.++|+.+||++.|...|..
T Consensus 499 ----------------------------------rdlKliVtSATm~a~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~e 544 (1042)
T KOG0924|consen 499 ----------------------------------RDLKLIVTSATMDAQKFSNFFGNCPQFTIPGRTYPVEIMYTKTPVE 544 (1042)
T ss_pred ----------------------------------ccceEEEeeccccHHHHHHHhCCCceeeecCCccceEEEeccCchH
Confidence 7899999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCC-CCCCeEEEEccCCCCHHHHHhhcCcCCCCcc
Q 011751 236 DYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPE-ASRKLVTVPIFSSLPSEQQMRVFAPAAAGFR 314 (478)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~-~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~ 314 (478)
+|++..+...+.++...+.|.+|||.++.++++..+..+...+..+.. ...++.|.+++++|+.+.+.++|.....|.+
T Consensus 545 DYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vR 624 (1042)
T KOG0924|consen 545 DYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVR 624 (1042)
T ss_pred HHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCce
Confidence 999999999999999998999999999999999999988887664432 2357899999999999999999999999999
Q ss_pred EEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCCCCeEEEecCHhhHhc-cc
Q 011751 315 KVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDK-LE 393 (478)
Q Consensus 315 ~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~-~~ 393 (478)
|+|||||++|.++++|++.||||+|+++.+.|+|..|+..+...|+|.++..||+|||||.|+|.||++|++..|.. |.
T Consensus 625 K~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml 704 (1042)
T KOG0924|consen 625 KCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEML 704 (1042)
T ss_pred eEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988766 99
Q ss_pred CCCCCcccccCchHHHHHHHHcCCCCCCCccCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHhccCCCCHhhhch
Q 011751 394 DSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSKA 473 (478)
Q Consensus 394 ~~~~pei~~~~l~~~~l~~~~~~~~~~~~~~~~~~p~~~~l~~al~~L~~~g~l~~~~~~t~~lG~~~~~~~~~p~~~~~ 473 (478)
+.++|||++.++.+++|.++++|+.++..|+|++||+.+.+..++-.|..+|||++.|.+|+ +|+.|+++||||.++||
T Consensus 705 ~stvPEIqRTNl~nvVLlLkslgV~dll~FdFmD~Pped~~~~sly~Lw~LGAl~~~g~LT~-lG~~MvefpLDP~lsKm 783 (1042)
T KOG0924|consen 705 PSTVPEIQRTNLSNVVLLLKSLGVDDLLKFDFMDPPPEDNLLNSLYQLWTLGALDNTGQLTP-LGRKMVEFPLDPPLSKM 783 (1042)
T ss_pred cCCCchhhhcchhhHHHHHHhcChhhhhCCCcCCCCHHHHHHHHHHHHHHhhccccCCccch-hhHHhhhCCCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999996 99999999999999999
Q ss_pred heecC
Q 011751 474 LIVAE 478 (478)
Q Consensus 474 l~~~~ 478 (478)
||-|+
T Consensus 784 ll~a~ 788 (1042)
T KOG0924|consen 784 LLMAA 788 (1042)
T ss_pred HHHHh
Confidence 98664
No 4
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.4e-81 Score=649.86 Aligned_cols=427 Identities=52% Similarity=0.840 Sum_probs=404.6
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHh
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (478)
..+...+..+|++....++..++.+++.++|+|||||||||++|+++++.++ ..+..|++++|+|.+|..++++++++.
T Consensus 40 ~~~~~~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-~~~g~I~~tQPRRlAArsvA~RvAeel 118 (845)
T COG1643 40 PDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-GIAGKIGCTQPRRLAARSVAERVAEEL 118 (845)
T ss_pred chhhhccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-ccCCeEEecCchHHHHHHHHHHHHHHh
Confidence 3456678889999999999999999999999999999999999999999988 345589999999999999999999999
Q ss_pred CCcCCCEEEEEEeecccCChhhhHH---------HHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccC
Q 011751 84 GVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADG 154 (478)
Q Consensus 84 ~~~~~~~vg~~~~~~~~~~~~~~~~---------~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~ 154 (478)
+..+|..|||.+++++.++..|+++ ++..++.++.+++|||||+|||+.++|+++++++++...+.
T Consensus 119 ~~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr----- 193 (845)
T COG1643 119 GEKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRR----- 193 (845)
T ss_pred CCCcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcC-----
Confidence 9999999999999999998888765 66678999999999999999999999999999999888661
Q ss_pred CCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChhHHHhhhCCCCeEEeCCccccceEEecCCCC
Q 011751 155 HSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPE 234 (478)
Q Consensus 155 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (478)
++.|+|+||||+|.++|++||+++|++.++++.|||+++|...+.
T Consensus 194 -----------------------------------~DLKiIimSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~ 238 (845)
T COG1643 194 -----------------------------------DDLKLIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAE 238 (845)
T ss_pred -----------------------------------CCceEEEEecccCHHHHHHHcCCCCEEEecCCccceEEEecCCCC
Confidence 579999999999999999999999999999999999999999888
Q ss_pred cch-HHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHH-HHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCC
Q 011751 235 PDY-LDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQE-RLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG 312 (478)
Q Consensus 235 ~~~-~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~-~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g 312 (478)
.++ ++..+...++++..++.|.+|||+|+.++++.+++.|.+ .+. ..+.+.++||.|+.+++.++|++...|
T Consensus 239 ~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~------~~~~i~PLy~~L~~~eQ~rvF~p~~~~ 312 (845)
T COG1643 239 ADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELG------DDLEILPLYGALSAEEQVRVFEPAPGG 312 (845)
T ss_pred cchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhcccc------CCcEEeeccccCCHHHHHhhcCCCCCC
Confidence 888 899999999999999999999999999999999999998 221 378999999999999999999999999
Q ss_pred ccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCCCCeEEEecCHhhHhcc
Q 011751 313 FRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKL 392 (478)
Q Consensus 313 ~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~ 392 (478)
++|||+|||++|.|++||+|+||||+|+.+.+.||+.+|+..+.+.|+|++++.||+|||||.++|+||+||++++|..+
T Consensus 313 ~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~~~ 392 (845)
T COG1643 313 KRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFLAF 392 (845)
T ss_pred cceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccccCchHHHHHHHHcCCC-CCCCccCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHhccCCCCHhhh
Q 011751 393 EDSTKPEIKRCNLSNVILQLKALGVD-DIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYS 471 (478)
Q Consensus 393 ~~~~~pei~~~~l~~~~l~~~~~~~~-~~~~~~~~~~p~~~~l~~al~~L~~~g~l~~~~~~t~~lG~~~~~~~~~p~~~ 471 (478)
+..+.|||.+.+|+.++|+++++|+. ++..|+|+|||+..++..|++.|..+||||.++.+|+ +|+.|+.+|+||++|
T Consensus 393 ~~~t~PEIlrtdLs~~vL~l~~~G~~~d~~~f~fld~P~~~~i~~A~~~L~~LGAld~~g~LT~-lG~~ms~lpldprLA 471 (845)
T COG1643 393 PEFTLPEILRTDLSGLVLQLKSLGIGQDIAPFPFLDPPPEAAIQAALTLLQELGALDDSGKLTP-LGKQMSLLPLDPRLA 471 (845)
T ss_pred ccCCChhhhhcchHHHHHHHHhcCCCCCcccCccCCCCChHHHHHHHHHHHHcCCcCCCCCCCH-HHHHHHhCCCChHHH
Confidence 99999999999999999999999995 9999999999999999999999999999999999996 999999999999999
Q ss_pred chheecC
Q 011751 472 KALIVAE 478 (478)
Q Consensus 472 ~~l~~~~ 478 (478)
+||+.|.
T Consensus 472 ~mLl~a~ 478 (845)
T COG1643 472 RMLLTAP 478 (845)
T ss_pred HHHHhcc
Confidence 9999763
No 5
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-79 Score=572.67 Aligned_cols=428 Identities=52% Similarity=0.835 Sum_probs=407.3
Q ss_pred chhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHH
Q 011751 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (478)
Q Consensus 3 ~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~ 82 (478)
+.++++.|..+|++.++.+....+.+++.++++|.|||||||++|++..+...... ..+.+++|+|.++.+++.+++++
T Consensus 36 Y~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~-~~v~CTQprrvaamsva~RVadE 114 (699)
T KOG0925|consen 36 YYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL-TGVACTQPRRVAAMSVAQRVADE 114 (699)
T ss_pred HHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc-cceeecCchHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999988776554 56899999999999999999999
Q ss_pred hCCcCCCEEEEEEeecccCChhhhHH---------HHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhccccc
Q 011751 83 SGVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSAD 153 (478)
Q Consensus 83 ~~~~~~~~vg~~~~~~~~~~~~~~~~---------~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~ 153 (478)
....+|..|||.++++++.+..+.++ +.++++.+..++++|+||||||+..+|.+++++|++...|
T Consensus 115 MDv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~r----- 189 (699)
T KOG0925|consen 115 MDVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNR----- 189 (699)
T ss_pred hccccchhccccccccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhhC-----
Confidence 99999999999999999998888776 6778899999999999999999999999999999999888
Q ss_pred CCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChhHHHhhhCCCCeEEeCCccccceEEecCCC
Q 011751 154 GHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYP 233 (478)
Q Consensus 154 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (478)
++.++|.||||++..+|..||+++|++.+++ .+|++++|...+
T Consensus 190 ------------------------------------pdLk~vvmSatl~a~Kfq~yf~n~Pll~vpg-~~PvEi~Yt~e~ 232 (699)
T KOG0925|consen 190 ------------------------------------PDLKLVVMSATLDAEKFQRYFGNAPLLAVPG-THPVEIFYTPEP 232 (699)
T ss_pred ------------------------------------CCceEEEeecccchHHHHHHhCCCCeeecCC-CCceEEEecCCC
Confidence 8999999999999999999999999999999 899999999999
Q ss_pred CcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCC-
Q 011751 234 EPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG- 312 (478)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g- 312 (478)
+.||+++++.+++.++..+.+|.+|||+++.+++++.++.+.+....+..+...+.+.++| +.++..++++....
T Consensus 233 erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~ 308 (699)
T KOG0925|consen 233 ERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKR 308 (699)
T ss_pred ChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCccc
Confidence 9999999999999999999999999999999999999999998888888888889999999 56677788776532
Q ss_pred ----ccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCCCCeEEEecCHhh
Q 011751 313 ----FRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENE 388 (478)
Q Consensus 313 ----~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~ 388 (478)
.+||+|+|++++.++++++|.+|||.|+.+++.|+|+...+.+...|+|+++..||+|||||..+|+||+||+++.
T Consensus 309 ~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~ 388 (699)
T KOG0925|consen 309 NGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEA 388 (699)
T ss_pred CCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHh
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhc-ccCCCCCcccccCchHHHHHHHHcCCCCCCCccCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHhccCCCC
Q 011751 389 FDK-LEDSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLD 467 (478)
Q Consensus 389 ~~~-~~~~~~pei~~~~l~~~~l~~~~~~~~~~~~~~~~~~p~~~~l~~al~~L~~~g~l~~~~~~t~~lG~~~~~~~~~ 467 (478)
|+. +.+.+.|||++++|.+.+|++|.+|+.+...|+|++||.++++.+|++.|..++|+|++|++|+ +|..|+++|+|
T Consensus 389 ~~~em~~~typeilrsNL~s~VL~LKklgI~dlvhfdfmDpPAPEtLMrALE~LnYLaaLdDdGnLT~-lG~imSEFPLd 467 (699)
T KOG0925|consen 389 FEKEMQPQTYPEILRSNLSSTVLQLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLAALDDDGNLTS-LGEIMSEFPLD 467 (699)
T ss_pred hhhcCCCCCcHHHHHHhhHHHHHHHHhcCcccccCCcCCCCCChHHHHHHHHHhhhhhhhCCCcccch-hhhhhhcCCCC
Confidence 987 9999999999999999999999999999999999999999999999999999999999999997 99999999999
Q ss_pred HhhhchheecC
Q 011751 468 PIYSKALIVAE 478 (478)
Q Consensus 468 p~~~~~l~~~~ 478 (478)
|++|||||.||
T Consensus 468 PqLAkmLi~S~ 478 (699)
T KOG0925|consen 468 PQLAKMLIGSC 478 (699)
T ss_pred hHHHHHHhhcC
Confidence 99999999987
No 6
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-76 Score=579.82 Aligned_cols=441 Identities=44% Similarity=0.725 Sum_probs=404.7
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCC----CcEEEEecchHHHHHHHHHHH
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD----GKLIGVTQPRRVAAVTVAKRV 79 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~----~~~i~~~~p~~~l~~~~~~~~ 79 (478)
-++++.|..+|+..-.+++.++|..+..++|||.|||||||++|++++++++... +..|.+++|+|.++..+++|+
T Consensus 246 ~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRV 325 (1172)
T KOG0926|consen 246 AEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRV 325 (1172)
T ss_pred HHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999999998765 668999999999999999999
Q ss_pred HHHhCCcCCCEEEEEEeecccCChhhhHH---------HHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcc
Q 011751 80 AEESGVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSK 150 (478)
Q Consensus 80 ~~~~~~~~~~~vg~~~~~~~~~~~~~~~~---------~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~ 150 (478)
+.+.+. .+..|||.+++++..+..+.+. ++.++-.+..|+.||+||||||+.++|+++++|.+++..|++
T Consensus 326 a~EL~~-~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k 404 (1172)
T KOG0926|consen 326 AFELGV-LGSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQK 404 (1172)
T ss_pred HHHhcc-CccceeEEEEeccccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHH
Confidence 999997 8999999999999988777664 666778899999999999999999999999999999987743
Q ss_pred cccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChhHHH---hhhCC-CCeEEeCCccccce
Q 011751 151 SADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFS---EYFGC-AKAVHVQGRQFPVE 226 (478)
Q Consensus 151 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~---~~~~~-~~~~~~~~~~~~~~ 226 (478)
...+- ....++++|+||||+.+.+|. ..|.. +|++.++.+++||.
T Consensus 405 ~~ke~-------------------------------~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVs 453 (1172)
T KOG0926|consen 405 YYKEQ-------------------------------CQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVS 453 (1172)
T ss_pred Hhhhh-------------------------------cccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceE
Confidence 22100 112678999999999888886 35543 57999999999999
Q ss_pred EEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHh---------------------------
Q 011751 227 ILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLL--------------------------- 279 (478)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~--------------------------- 279 (478)
+||......+|+..+....+.+|..-+.|.||||+.+..+++.+++.|++.+.
T Consensus 454 IHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~ 533 (1172)
T KOG0926|consen 454 IHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGD 533 (1172)
T ss_pred EEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhcc
Confidence 99999999999999999999999999999999999999999999999999843
Q ss_pred ---------------------------------------------------------------cCCCCCCCeEEEEccCC
Q 011751 280 ---------------------------------------------------------------QLPEASRKLVTVPIFSS 296 (478)
Q Consensus 280 ---------------------------------------------------------------~~~~~~~~~~v~~~h~~ 296 (478)
.-......+.|.++|+-
T Consensus 534 ~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSL 613 (1172)
T KOG0926|consen 534 SNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSL 613 (1172)
T ss_pred CcccccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhh
Confidence 00011235789999999
Q ss_pred CCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC
Q 011751 297 LPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG 376 (478)
Q Consensus 297 l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~ 376 (478)
|+.+.+.++|+..+.|.+-++||||++|.+++||+|+||||||..+.+.||..+|++.+...|+|+++.-||+|||||.|
T Consensus 614 Ls~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg 693 (1172)
T KOG0926|consen 614 LSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG 693 (1172)
T ss_pred cCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecCHhhHhc-ccCCCCCcccccCchHHHHHHHHcCCCCCCCccCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCH
Q 011751 377 PGKCFRLYPENEFDK-LEDSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSD 455 (478)
Q Consensus 377 ~G~~~~l~~~~~~~~-~~~~~~pei~~~~l~~~~l~~~~~~~~~~~~~~~~~~p~~~~l~~al~~L~~~g~l~~~~~~t~ 455 (478)
+|+||+||+...|+. |..+..|||++.+.++++|++|++++.++..|+|..||...+++.|...|..+||||.+|.+|.
T Consensus 694 pGHcYRLYSSAVf~~~Fe~fS~PEIlk~Pve~lvLqMKsMnI~kVvnFPFPtpPd~~~L~~Aer~L~~LgALd~~g~lT~ 773 (1172)
T KOG0926|consen 694 PGHCYRLYSSAVFSNDFEEFSLPEILKKPVESLVLQMKSMNIDKVVNFPFPTPPDRSALEKAERRLKALGALDSNGGLTK 773 (1172)
T ss_pred CCceeehhhhHHhhcchhhhccHHHhhCcHHHHHHHHHhcCccceecCCCCCCccHHHHHHHHHHHHHhccccccCCccc
Confidence 999999999999995 9999999999999999999999999999999999999999999999999999999999999997
Q ss_pred HHHHHhccCCCCHhhhchheec
Q 011751 456 PVGHQMARLPLDPIYSKALIVA 477 (478)
Q Consensus 456 ~lG~~~~~~~~~p~~~~~l~~~ 477 (478)
||+.|+.+|+.|+.+|||+.|
T Consensus 774 -lGk~mS~FPlsPrfsKmL~~~ 794 (1172)
T KOG0926|consen 774 -LGKAMSLFPLSPRFSKMLATS 794 (1172)
T ss_pred -ccchhcccccChhHHHHHHHH
Confidence 999999999999999999764
No 7
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.1e-74 Score=608.68 Aligned_cols=415 Identities=37% Similarity=0.566 Sum_probs=372.6
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEE
Q 011751 13 LPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVG 92 (478)
Q Consensus 13 ~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg 92 (478)
+|++.+..+++..+.++++++++|+|||||||++|+++++... .+.++++++|+|+++.+++++++++++..++..||
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~--~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VG 78 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG--IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVG 78 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc--cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEE
Confidence 6899999999999999999999999999999999999987753 34589999999999999999999999999999999
Q ss_pred EEEeecccCChhhhH---------HHHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHh-hcccccCCCCCCCCC
Q 011751 93 YSIRFDDRTSTSTRI---------KEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNA-RSKSADGHSNGNNNN 162 (478)
Q Consensus 93 ~~~~~~~~~~~~~~~---------~~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~~~g 162 (478)
|.++++...+..+++ ..+..++.++++++|||||+|||+.++|+++++++++... +
T Consensus 79 y~vr~~~~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr-------------- 144 (819)
T TIGR01970 79 YRVRGENKVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLR-------------- 144 (819)
T ss_pred EEEccccccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcC--------------
Confidence 999887655433322 2444567899999999999999999999999988876542 3
Q ss_pred CCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChhHHHhhhCCCCeEEeCCccccceEEecCCCCcchHHHHH
Q 011751 163 ENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDYLDATL 242 (478)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (478)
++.|+|+||||++.+.+.+||++.+++.++++.+|++.+|...+..++....+
T Consensus 145 ---------------------------~dlqlIlmSATl~~~~l~~~l~~~~vI~~~gr~~pVe~~y~~~~~~~~~~~~v 197 (819)
T TIGR01970 145 ---------------------------EDLKILAMSATLDGERLSSLLPDAPVVESEGRSFPVEIRYLPLRGDQRLEDAV 197 (819)
T ss_pred ---------------------------CCceEEEEeCCCCHHHHHHHcCCCcEEEecCcceeeeeEEeecchhhhHHHHH
Confidence 67899999999998889999999999999999999999998776555443333
Q ss_pred -HHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEecc
Q 011751 243 -ITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN 321 (478)
Q Consensus 243 -~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~ 321 (478)
..+.... ....|++|||||+.++++.++..|.+.+. .++.+.++||+|++++|.++++.|++|+++||||||
T Consensus 198 ~~~l~~~l-~~~~g~iLVFlpg~~eI~~l~~~L~~~~~------~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATn 270 (819)
T TIGR01970 198 SRAVEHAL-ASETGSILVFLPGQAEIRRVQEQLAERLD------SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATN 270 (819)
T ss_pred HHHHHHHH-HhcCCcEEEEECCHHHHHHHHHHHHhhcC------CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecc
Confidence 2333333 23478999999999999999999987532 278899999999999999999999999999999999
Q ss_pred ccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCCCCeEEEecCHhhHhcccCCCCCccc
Q 011751 322 IAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKLEDSTKPEIK 401 (478)
Q Consensus 322 ~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~pei~ 401 (478)
++|+|||||+|++|||+|+.+...||+.+|++.+.+.|+|+++|.||+|||||.++|.||+||++++|..+.++..|||.
T Consensus 271 IAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~~G~cyrL~t~~~~~~l~~~~~PEI~ 350 (819)
T TIGR01970 271 IAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLEPGVCYRLWSEEQHQRLPAQDEPEIL 350 (819)
T ss_pred hHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCCCCEEEEeCCHHHHHhhhcCCCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHcCCCCCCCccCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHhccCCCCHhhhchheecC
Q 011751 402 RCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSKALIVAE 478 (478)
Q Consensus 402 ~~~l~~~~l~~~~~~~~~~~~~~~~~~p~~~~l~~al~~L~~~g~l~~~~~~t~~lG~~~~~~~~~p~~~~~l~~~~ 478 (478)
+.+|.+++|+++.+|+.+...|+|++||+.+++..|++.|..+||||.++++|+ +|+.|+.+|++|++|+||+.|+
T Consensus 351 r~~L~~~~L~l~~~g~~~~~~~~~l~~P~~~~i~~a~~~L~~lgald~~~~lT~-~G~~~~~lp~~p~l~~~ll~~~ 426 (819)
T TIGR01970 351 QADLSGLALELAQWGAKDPSDLRWLDAPPSVALAAARQLLQRLGALDAQGRLTA-HGKAMAALGCHPRLAAMLLSAH 426 (819)
T ss_pred ccCcHHHHHHHHHcCCCChhhCCCCCCcCHHHHHHHHHHHHHCCCCCCCCCcCH-HHHHHHhcCCCHHHHHHHHHhh
Confidence 999999999999999998888999999999999999999999999999999996 9999999999999999999864
No 8
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2.5e-74 Score=607.46 Aligned_cols=417 Identities=36% Similarity=0.581 Sum_probs=374.0
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEE
Q 011751 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRV 91 (478)
Q Consensus 12 ~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~v 91 (478)
.+|++.+..+++.++.++++++++|||||||||++|+++++.... +.+++|++|+|+++.++++++++.++..++..|
T Consensus 3 ~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~--~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~V 80 (812)
T PRK11664 3 SLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI--NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETV 80 (812)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc--CCeEEEECChHHHHHHHHHHHHHHhCcccCceE
Confidence 489999999999999999999999999999999999999876543 247999999999999999999999999999999
Q ss_pred EEEEeecccCChhhh--------HH-HHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHh-hcccccCCCCCCCC
Q 011751 92 GYSIRFDDRTSTSTR--------IK-EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNA-RSKSADGHSNGNNN 161 (478)
Q Consensus 92 g~~~~~~~~~~~~~~--------~~-~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~~~ 161 (478)
||.++++...+..++ +. .+..++.++++++|||||+|+|+.++|+++++++++... +
T Consensus 81 Gy~vr~~~~~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr------------- 147 (812)
T PRK11664 81 GYRMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLR------------- 147 (812)
T ss_pred EEEecCccccCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCC-------------
Confidence 999887765443332 22 334567899999999999999999999999998776542 3
Q ss_pred CCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChhHHHhhhCCCCeEEeCCccccceEEecCCCCcchHHHH
Q 011751 162 NENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDYLDAT 241 (478)
Q Consensus 162 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (478)
++.|+|+||||++.+.+++||++.+++.++++.+|++.+|...+..++....
T Consensus 148 ----------------------------~~lqlilmSATl~~~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~~~~~~~~~ 199 (812)
T PRK11664 148 ----------------------------DDLKLLIMSATLDNDRLQQLLPDAPVIVSEGRSFPVERRYQPLPAHQRFDEA 199 (812)
T ss_pred ----------------------------ccceEEEEecCCCHHHHHHhcCCCCEEEecCccccceEEeccCchhhhHHHH
Confidence 6789999999999889999999999999999999999999887766665544
Q ss_pred HHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEecc
Q 011751 242 LITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN 321 (478)
Q Consensus 242 ~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~ 321 (478)
+...+........|++|||||+.++++.+++.|.+... .++.+.++||+|+.++|.+++..|++|+++||||||
T Consensus 200 v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~------~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATn 273 (812)
T PRK11664 200 VARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVA------SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATN 273 (812)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhcc------CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecc
Confidence 33333333334479999999999999999999987422 167899999999999999999999999999999999
Q ss_pred ccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCCCCeEEEecCHhhHhcccCCCCCccc
Q 011751 322 IAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKLEDSTKPEIK 401 (478)
Q Consensus 322 ~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~pei~ 401 (478)
++|+|+|||+|++|||+|+.+...||+.+|++.+.+.|+|+++|.||+|||||.++|.||+||++++|+.+.++..|||.
T Consensus 274 IAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~G~cyrL~t~~~~~~l~~~~~PEI~ 353 (812)
T PRK11664 274 IAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLEPGICLHLYSKEQAERAAAQSEPEIL 353 (812)
T ss_pred hHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCCCCcEEEEecCHHHHhhCccCCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHcCCCCCCCccCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHhccCCCCHhhhchheecC
Q 011751 402 RCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSKALIVAE 478 (478)
Q Consensus 402 ~~~l~~~~l~~~~~~~~~~~~~~~~~~p~~~~l~~al~~L~~~g~l~~~~~~t~~lG~~~~~~~~~p~~~~~l~~~~ 478 (478)
+.+|++++|.++++|+.+...|+|++||+.++++.|++.|..+||||+++++|+ +|+.|+++|++|++|+||+.|+
T Consensus 354 r~dL~~~~L~l~~~g~~~~~~~~~ld~P~~~~~~~A~~~L~~lgald~~g~lT~-~G~~m~~lp~~Prla~~ll~a~ 429 (812)
T PRK11664 354 HSDLSGLLLELLQWGCHDPAQLSWLDQPPAAALAAAKRLLQQLGALDGQGRLTA-RGRKMAALGNDPRLAAMLVAAK 429 (812)
T ss_pred ccchHHHHHHHHHcCCCCHHhCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCcCH-HHHHHHhcCCchHHHHHHHHHH
Confidence 999999999999999998888999999999999999999999999999999996 9999999999999999999763
No 9
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.5e-73 Score=612.15 Aligned_cols=418 Identities=45% Similarity=0.735 Sum_probs=375.9
Q ss_pred hhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCC
Q 011751 9 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELG 88 (478)
Q Consensus 9 ~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~ 88 (478)
....+|++....+++..+.++++++|+|+|||||||++|+++++.+... ...|++++|+|.++..++.+++++.+..+|
T Consensus 62 ~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~-~~~I~~tQPRRlAA~svA~RvA~elg~~lG 140 (1283)
T TIGR01967 62 YPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGS-HGLIGHTQPRRLAARTVAQRIAEELGTPLG 140 (1283)
T ss_pred CCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCC-CceEecCCccHHHHHHHHHHHHHHhCCCcc
Confidence 4567899999999999999999999999999999999999999876432 347899999999999999999999999999
Q ss_pred CEEEEEEeecccCChhhhHH---------HHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccCCCCCC
Q 011751 89 QRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGN 159 (478)
Q Consensus 89 ~~vg~~~~~~~~~~~~~~~~---------~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 159 (478)
..|||.++++...+..+++. .+..++.++++++|||||+|||+.++|+++++++++...+
T Consensus 141 ~~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r----------- 209 (1283)
T TIGR01967 141 EKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR----------- 209 (1283)
T ss_pred eEEeeEEcCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhC-----------
Confidence 99999999988776655443 5556788999999999999999999999999999987766
Q ss_pred CCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChhHHHhhhCCCCeEEeCCccccceEEecCCCC-----
Q 011751 160 NNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPE----- 234 (478)
Q Consensus 160 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 234 (478)
++.|+|+||||++.+.|+++|++.+++.++++.+|++.+|.....
T Consensus 210 ------------------------------pdLKlIlmSATld~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~~~~~ 259 (1283)
T TIGR01967 210 ------------------------------PDLKIIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPLVEEQEDD 259 (1283)
T ss_pred ------------------------------CCCeEEEEeCCcCHHHHHHHhcCCCEEEECCCcccceeEEecccccccch
Confidence 788999999999999999999999999999999999999876532
Q ss_pred -cchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCc
Q 011751 235 -PDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGF 313 (478)
Q Consensus 235 -~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~ 313 (478)
.++.+.....+..+.. +..|++|||+|+.++++.+++.|++.. ..++.+.++||+|+.++|.++++.+ +.
T Consensus 260 ~~~~~~~i~~~I~~l~~-~~~GdILVFLpg~~EI~~l~~~L~~~~------~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~ 330 (1283)
T TIGR01967 260 DLDQLEAILDAVDELFA-EGPGDILIFLPGEREIRDAAEILRKRN------LRHTEILPLYARLSNKEQQRVFQPH--SG 330 (1283)
T ss_pred hhhHHHHHHHHHHHHHh-hCCCCEEEeCCCHHHHHHHHHHHHhcC------CCCcEEEeccCCCCHHHHHHHhCCC--CC
Confidence 1234444444444443 357899999999999999999998752 1256799999999999999998875 34
Q ss_pred cEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCCCCeEEEecCHhhHhccc
Q 011751 314 RKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKLE 393 (478)
Q Consensus 314 ~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~ 393 (478)
.+||||||++|+|+|||+|+||||+|+.+.+.||+.+++..+...|+|+++|.||+|||||.++|.||+||++++|+.++
T Consensus 331 rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~~~~ 410 (1283)
T TIGR01967 331 RRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAPGICIRLYSEEDFNSRP 410 (1283)
T ss_pred ceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCCCceEEEecCHHHHHhhh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccCchHHHHHHHHcCCCCCCCccCCCCCCHHHHHHHHHHHHHCCCCCCCC---CCCHHHHHHhccCCCCHhh
Q 011751 394 DSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDC---KLSDPVGHQMARLPLDPIY 470 (478)
Q Consensus 394 ~~~~pei~~~~l~~~~l~~~~~~~~~~~~~~~~~~p~~~~l~~al~~L~~~g~l~~~~---~~t~~lG~~~~~~~~~p~~ 470 (478)
++..|||.+.+|..++|+++++|+.++..|+|++||+.+++..|++.|..+||||+++ ++|+ +|+.|+.+|++|++
T Consensus 411 ~~~~PEIlR~~L~~viL~l~~lg~~di~~f~fldpP~~~~i~~A~~~L~~LGAld~~~~~~~LT~-lGr~ma~LPldPrl 489 (1283)
T TIGR01967 411 EFTDPEILRTNLASVILQMLALRLGDIAAFPFIEAPDPRAIRDGFRLLEELGALDDDEAEPQLTP-IGRQLAQLPVDPRL 489 (1283)
T ss_pred hccCcccccccHHHHHHHHHhcCCCCcccccCCCCCCHHHHHHHHHHHHHCCCCCCCCCCccccH-HHHHHhhcCCChHH
Confidence 9999999999999999999999999999999999999999999999999999999988 7996 99999999999999
Q ss_pred hchheecC
Q 011751 471 SKALIVAE 478 (478)
Q Consensus 471 ~~~l~~~~ 478 (478)
|+||+.|+
T Consensus 490 armLl~a~ 497 (1283)
T TIGR01967 490 ARMLLEAH 497 (1283)
T ss_pred HHHHHHhh
Confidence 99999863
No 10
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=8.4e-73 Score=604.16 Aligned_cols=418 Identities=43% Similarity=0.701 Sum_probs=370.8
Q ss_pred hhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCC
Q 011751 9 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELG 88 (478)
Q Consensus 9 ~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~ 88 (478)
.+..+|++....+++..+.++++++|+|+|||||||++|+++++.+... ...|++++|++.++...+.+++++++..+|
T Consensus 69 ~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g~g~-~g~I~~TQPRRlAArsLA~RVA~El~~~lG 147 (1294)
T PRK11131 69 YPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGRGV-KGLIGHTQPRRLAARTVANRIAEELETELG 147 (1294)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcCCCC-CCceeeCCCcHHHHHHHHHHHHHHHhhhhc
Confidence 3567899999999999999999999999999999999999998765432 236889999999999999999999999899
Q ss_pred CEEEEEEeecccCChhhhH---------HHHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccCCCCCC
Q 011751 89 QRVGYSIRFDDRTSTSTRI---------KEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGN 159 (478)
Q Consensus 89 ~~vg~~~~~~~~~~~~~~~---------~~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 159 (478)
..+||.++++...+..+.+ ..+..++.++++++|||||||||+.++|.++++++++...+
T Consensus 148 ~~VGY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~r----------- 216 (1294)
T PRK11131 148 GCVGYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRR----------- 216 (1294)
T ss_pred ceeceeecCccccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcC-----------
Confidence 9999999887655433322 35556788999999999999999999999999998887665
Q ss_pred CCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChhHHHhhhCCCCeEEeCCccccceEEecCCCCc----
Q 011751 160 NNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEP---- 235 (478)
Q Consensus 160 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 235 (478)
++.|+|+||||++.+.|+++|++.+++.++++.+|++.+|......
T Consensus 217 ------------------------------pdlKvILmSATid~e~fs~~F~~apvI~V~Gr~~pVei~y~p~~~~~~~~ 266 (1294)
T PRK11131 217 ------------------------------PDLKVIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDT 266 (1294)
T ss_pred ------------------------------CCceEEEeeCCCCHHHHHHHcCCCCEEEEcCccccceEEEeecccccchh
Confidence 6789999999999999999999999999999999999999875432
Q ss_pred --chHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCc
Q 011751 236 --DYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGF 313 (478)
Q Consensus 236 --~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~ 313 (478)
+++...+..+..+. .++.|++|||||+.++++.+++.|.+. ......+.++||+|++++|..+++. .|.
T Consensus 267 ~~d~l~~ll~~V~~l~-~~~~GdILVFLpg~~EIe~lae~L~~~------~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~ 337 (1294)
T PRK11131 267 ERDQLQAIFDAVDELG-REGPGDILIFMSGEREIRDTADALNKL------NLRHTEILPLYARLSNSEQNRVFQS--HSG 337 (1294)
T ss_pred hHHHHHHHHHHHHHHh-cCCCCCEEEEcCCHHHHHHHHHHHHhc------CCCcceEeecccCCCHHHHHHHhcc--cCC
Confidence 23344444443333 355789999999999999999999874 1124568899999999999999987 478
Q ss_pred cEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCCCCeEEEecCHhhHhccc
Q 011751 314 RKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKLE 393 (478)
Q Consensus 314 ~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~ 393 (478)
++||||||++|+|||||+|+||||+|+.+.+.||+.+++..+...|+|+++|.||+|||||.++|.||+||++++|+.++
T Consensus 338 rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~~~~~ 417 (1294)
T PRK11131 338 RRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRP 417 (1294)
T ss_pred eeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCCCcEEEEeCCHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccCchHHHHHHHHcCCCCCCCccCCCCCCHHHHHHHHHHHHHCCCCCCC-----CCCCHHHHHHhccCCCCH
Q 011751 394 DSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDD-----CKLSDPVGHQMARLPLDP 468 (478)
Q Consensus 394 ~~~~pei~~~~l~~~~l~~~~~~~~~~~~~~~~~~p~~~~l~~al~~L~~~g~l~~~-----~~~t~~lG~~~~~~~~~p 468 (478)
++..|||.+.+|.+++|+++++|+.++..|+|++||+.+++..+++.|..+||||.+ +++|+ +|+.|+++|+||
T Consensus 418 ~~~~PEIlR~~L~~viL~lk~lgl~di~~F~fldpP~~~~i~~al~~L~~LgAld~~~~~~~~~LT~-lG~~la~LPldP 496 (1294)
T PRK11131 418 EFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTP-LGRQLAQLPVDP 496 (1294)
T ss_pred cccCCccccCCHHHHHHHHHHcCCCCcceeeCCCCCCHHHHHHHHHHHHHCCCCCccccCCCccCcH-HHHHHHhCCCCh
Confidence 999999999999999999999999999999999999999999999999999999864 57996 999999999999
Q ss_pred hhhchheecC
Q 011751 469 IYSKALIVAE 478 (478)
Q Consensus 469 ~~~~~l~~~~ 478 (478)
++||||+.|+
T Consensus 497 rlakmLl~a~ 506 (1294)
T PRK11131 497 RLARMVLEAQ 506 (1294)
T ss_pred HHHHHHHHhh
Confidence 9999999874
No 11
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=1.1e-71 Score=573.29 Aligned_cols=432 Identities=41% Similarity=0.637 Sum_probs=387.9
Q ss_pred chhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCC-CcEEEEecchHHHHHHHHHHHHH
Q 011751 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD-GKLIGVTQPRRVAAVTVAKRVAE 81 (478)
Q Consensus 3 ~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~-~~~i~~~~p~~~l~~~~~~~~~~ 81 (478)
+.++++.+..+|.+..+++++.++.++++++|+|.|||||||++|+++++.....+ ...++|++|+|..|..++++++.
T Consensus 162 ~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ 241 (924)
T KOG0920|consen 162 YKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAK 241 (924)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999999999999999998765433 56799999999999999999999
Q ss_pred HhCCcCCCEEEEEEeecccCChhhh---------HHHHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccc
Q 011751 82 ESGVELGQRVGYSIRFDDRTSTSTR---------IKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSA 152 (478)
Q Consensus 82 ~~~~~~~~~vg~~~~~~~~~~~~~~---------~~~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~ 152 (478)
+++...|..|||.++.+...+..++ ++.+..++.+.+++++|+||+|||+.++|+++.++|.+...+
T Consensus 242 ER~~~~g~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~---- 317 (924)
T KOG0920|consen 242 ERGESLGEEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRN---- 317 (924)
T ss_pred HhccccCCeeeEEEeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhC----
Confidence 9999999999999998877655443 346667889999999999999999999999999999999888
Q ss_pred cCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChhHHHhhhCCCCeEEeCCccccceEEecCC
Q 011751 153 DGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLY 232 (478)
Q Consensus 153 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (478)
+++|+|+||||+|.+.|.+||++++++.++++.+|+..+|+.+
T Consensus 318 -------------------------------------p~LkvILMSAT~dae~fs~YF~~~pvi~i~grtfpV~~~fLED 360 (924)
T KOG0920|consen 318 -------------------------------------PDLKVILMSATLDAELFSDYFGGCPVITIPGRTFPVKEYFLED 360 (924)
T ss_pred -------------------------------------CCceEEEeeeecchHHHHHHhCCCceEeecCCCcchHHHHHHH
Confidence 8999999999999999999999999999999999998877543
Q ss_pred -----------------CCcc--------------hHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcC
Q 011751 233 -----------------PEPD--------------YLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQL 281 (478)
Q Consensus 233 -----------------~~~~--------------~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~ 281 (478)
++.. ..+.....+..++.....|.||||+|+.+++..+...|.....-
T Consensus 361 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f- 439 (924)
T KOG0920|consen 361 ILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPF- 439 (924)
T ss_pred HHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhcccc-
Confidence 0111 12233345556666667899999999999999999998764221
Q ss_pred CCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecC
Q 011751 282 PEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPIS 361 (478)
Q Consensus 282 ~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s 361 (478)
....++.+.++|+.|+.++++.++...+.|.+|||+||+++|.+|+||||-||||+|+.+.+.||+..+++.+...|+|
T Consensus 440 -~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvS 518 (924)
T KOG0920|consen 440 -ADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVS 518 (924)
T ss_pred -ccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeecc
Confidence 1124689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccCCCCCCeEEEecCHhhHhcccC-CCCCcccccCchHHHHHHHHcCCCCCCCc--cCCCCCCHHHHHHHH
Q 011751 362 KAQALQRSGRAGREGPGKCFRLYPENEFDKLED-STKPEIKRCNLSNVILQLKALGVDDIIGF--DFMEKPSRASIIKSL 438 (478)
Q Consensus 362 ~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~-~~~pei~~~~l~~~~l~~~~~~~~~~~~~--~~~~~p~~~~l~~al 438 (478)
+++..||+|||||..+|.||++|++..|+.+.. ++.|||.+.++.+++|++|.++...+..| ..++||+.+++..|+
T Consensus 519 kAna~QR~GRAGRv~~G~cy~L~~~~~~~~~~~~~q~PEilR~pL~~l~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~ 598 (924)
T KOG0920|consen 519 KANAKQRRGRAGRVRPGICYHLYTRSRYEKLMLAYQLPEILRTPLEELCLHIKVLEQGSIKAFLSKALDPPPADAVDLAI 598 (924)
T ss_pred ccchHHhcccccCccCCeeEEeechhhhhhcccccCChHHHhChHHHhhheeeeccCCCHHHHHHHhcCCCChHHHHHHH
Confidence 999999999999999999999999999999777 99999999999999999998888776654 668999999999999
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHhccCCCCHhhhchheecC
Q 011751 439 EQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSKALIVAE 478 (478)
Q Consensus 439 ~~L~~~g~l~~~~~~t~~lG~~~~~~~~~p~~~~~l~~~~ 478 (478)
..|..+||++.++++|+ ||+.++.+|+||++|||++.+.
T Consensus 599 ~~L~~igaL~~~e~LT~-LG~~la~lPvd~~igK~ll~g~ 637 (924)
T KOG0920|consen 599 ERLKQIGALDESEELTP-LGLHLASLPVDVRIGKLLLFGA 637 (924)
T ss_pred HHHHHhccccCcccchH-HHHHHHhCCCccccchhheehh
Confidence 99999999999999996 9999999999999999999863
No 12
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=2.1e-56 Score=459.86 Aligned_cols=391 Identities=23% Similarity=0.294 Sum_probs=298.3
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcC-----c--------cCCCcEEEEecchHHHHHHHHHHHHHHh
Q 011751 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAG-----F--------CRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (478)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~-----~--------~~~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (478)
.+|+++++.+.+|++++++|+||||||+++|+++++.. + ......+++++|+++++.|+..++.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 47999999999999999999999999999999886531 1 1124579999999999999999887766
Q ss_pred CCcCCCEEEEEEeecccCCh--hhhH-------H-HHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhccccc
Q 011751 84 GVELGQRVGYSIRFDDRTST--STRI-------K-EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSAD 153 (478)
Q Consensus 84 ~~~~~~~vg~~~~~~~~~~~--~~~~-------~-~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~ 153 (478)
+......+.+...+.+.... .+.. . ..+....+.++++||+||||||+..+|.++.++++....
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~------ 320 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLTLNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDK------ 320 (675)
T ss_pred CccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcccccccccCCEEEccccccCccchhHHHHHHHHhhhh------
Confidence 54221111122222222111 0110 0 112234688999999999999999999999998865432
Q ss_pred CCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC--ChhHHHhhhCCCCeEEeCCcc-ccceEEec
Q 011751 154 GHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSEYFGCAKAVHVQGRQ-FPVEILYT 230 (478)
Q Consensus 154 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 230 (478)
..|+++||||+ +.+.+.+|+++++.+.++++. +|++.+|.
T Consensus 321 -------------------------------------~rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi 363 (675)
T PHA02653 321 -------------------------------------IRSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYV 363 (675)
T ss_pred -------------------------------------cCEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEe
Confidence 13899999999 566889999999899998874 89998887
Q ss_pred CCCC-----cchHHHHHHHHHHhhh---cCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHH
Q 011751 231 LYPE-----PDYLDATLITIFQVHL---DEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQ 302 (478)
Q Consensus 231 ~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r 302 (478)
.... .++.+.....+...+. ...++++|||||++++++.+++.|.+.. +++.+.++||++++.+
T Consensus 364 ~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~-------~~~~v~~LHG~Lsq~e- 435 (675)
T PHA02653 364 KNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRL-------PIYDFYIIHGKVPNID- 435 (675)
T ss_pred ecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhc-------CCceEEeccCCcCHHH-
Confidence 5432 1222222222222222 2246789999999999999999998752 2578999999999853
Q ss_pred HhhcCcC-CCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCCCCeEE
Q 011751 303 MRVFAPA-AAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCF 381 (478)
Q Consensus 303 ~~i~~~f-~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~ 381 (478)
+.++.| ++|+.+||||||++|+|+|||+|++|||+|+.+.+. +..+. ..|+|.++|.||+|||||.++|.||
T Consensus 436 -q~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~--~~~g~----~~~iSkasa~QRaGRAGR~~~G~c~ 508 (675)
T PHA02653 436 -EILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPE--PFGGK----EMFISKSMRTQRKGRVGRVSPGTYV 508 (675)
T ss_pred -HHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCC--cccCc----ccccCHHHHHHhccCcCCCCCCeEE
Confidence 444555 789999999999999999999999999999876553 33443 3589999999999999999999999
Q ss_pred EecCHhhHhcccCCCCCcccccCchHHHHHHHHcCCCCCCCccCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHH--HH
Q 011751 382 RLYPENEFDKLEDSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPV--GH 459 (478)
Q Consensus 382 ~l~~~~~~~~~~~~~~pei~~~~l~~~~l~~~~~~~~~~~~~~~~~~p~~~~l~~al~~L~~~g~l~~~~~~t~~l--G~ 459 (478)
+||+++++. ..+++...+|..++|+++++|+.... +.|++||+.++++.|++.|..+|++|+ ++|. | |+
T Consensus 509 rLyt~~~~~-----pI~ri~~~~L~~~vL~lk~~g~~~~~-~~~ldpP~~~~l~~A~~~L~~lga~~~--~l~~-l~~~~ 579 (675)
T PHA02653 509 YFYDLDLLK-----PIKRIDSEFLHNYILYAKYFNLTLPE-DLFVIPSNLDRLRKTEEYIDSFNISIE--KWYE-ILSNY 579 (675)
T ss_pred EEECHHHhH-----HHHHHhHHHHHHHHHHHHHcCCCCcc-cccCCCCCHHHHHHHHHHHHHcCCCch--hhhh-hhccc
Confidence 999998752 12333333489999999999995444 459999999999999999999998744 8998 9 99
Q ss_pred HhccCCCCHhhhchheecC
Q 011751 460 QMARLPLDPIYSKALIVAE 478 (478)
Q Consensus 460 ~~~~~~~~p~~~~~l~~~~ 478 (478)
.++.+ ++||+++.++
T Consensus 580 ~~~~~----~~~k~~~~g~ 594 (675)
T PHA02653 580 YVNML----EYAKIYVKGG 594 (675)
T ss_pred cHHHH----HHhHHHhccc
Confidence 99999 9999998874
No 13
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.8e-45 Score=392.39 Aligned_cols=416 Identities=22% Similarity=0.244 Sum_probs=283.0
Q ss_pred hhHHHhhhcCCcHHHHHHHHHH-HhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHH
Q 011751 4 QKILQQRKSLPIASVEKRLVEE-VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~-l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~ 82 (478)
++.+...+...++++|.++++. +.+|+++++++|||||||.++..+++.... .+.+++++.|+++++.|..+.+.+.
T Consensus 13 ~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~--~~~kal~i~P~raLa~q~~~~~~~~ 90 (737)
T PRK02362 13 IEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA--RGGKALYIVPLRALASEKFEEFERF 90 (737)
T ss_pred HHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh--cCCcEEEEeChHHHHHHHHHHHHHh
Confidence 3455555566789999999998 889999999999999999888777766543 3567999999999999999988754
Q ss_pred hCCcCCCEEEEEEee-----------cccCChhhhHHHHhhC--cCcCCCcceEeecccccchhhhHHHHHHHHHHHhhc
Q 011751 83 SGVELGQRVGYSIRF-----------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARS 149 (478)
Q Consensus 83 ~~~~~~~~vg~~~~~-----------~~~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~ 149 (478)
.. .+..++...+. +..+.+..++..++.+ .++++++++|+||+|
T Consensus 91 ~~--~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H--------------------- 147 (737)
T PRK02362 91 EE--LGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVH--------------------- 147 (737)
T ss_pred hc--CCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcc---------------------
Confidence 21 23444432211 1112334445444442 467899999999999
Q ss_pred ccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC-ChhHHHhhhCCCCeEEeCCccccceEE
Q 011751 150 KSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQFPVEIL 228 (478)
Q Consensus 150 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (478)
++.+..++..++.++.++... .++.|+|+||||+ |++++++|++... +....++.++...
T Consensus 148 -----------------~l~d~~rg~~le~il~rl~~~-~~~~qii~lSATl~n~~~la~wl~~~~-~~~~~rpv~l~~~ 208 (737)
T PRK02362 148 -----------------LIDSANRGPTLEVTLAKLRRL-NPDLQVVALSATIGNADELADWLDAEL-VDSEWRPIDLREG 208 (737)
T ss_pred -----------------ccCCCcchHHHHHHHHHHHhc-CCCCcEEEEcccCCCHHHHHHHhCCCc-ccCCCCCCCCeee
Confidence 233333333333333332211 1568999999999 9999999997542 2111222222211
Q ss_pred ecCC-----CCc------chHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCC---------------
Q 011751 229 YTLY-----PEP------DYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLP--------------- 282 (478)
Q Consensus 229 ~~~~-----~~~------~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~--------------- 282 (478)
.... ... .........+.... ..++++||||+|+++|+.++..|.+......
T Consensus 209 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l 286 (737)
T PRK02362 209 VFYGGAIHFDDSQREVEVPSKDDTLNLVLDTL--EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEI 286 (737)
T ss_pred EecCCeeccccccccCCCccchHHHHHHHHHH--HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Confidence 1000 000 00022233333332 2478999999999999999999876532100
Q ss_pred -----C-------CCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCC
Q 011751 283 -----E-------ASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVK 350 (478)
Q Consensus 283 -----~-------~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~ 350 (478)
. ......+..+||+|++++|+.+++.|++|.++|||||+++++|+|+|++++||+ ....||+..
T Consensus 287 ~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~----~~~~yd~~~ 362 (737)
T PRK02362 287 REVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIR----DYRRYDGGA 362 (737)
T ss_pred HhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEe----cceeecCCC
Confidence 0 001136889999999999999999999999999999999999999999999997 466788655
Q ss_pred CcccceeeecCHHHHHHhhcccCCCC---CCeEEEecCHh-----hHhcccCCCCCccc------ccCchHHHHHHHHcC
Q 011751 351 GMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPEN-----EFDKLEDSTKPEIK------RCNLSNVILQLKALG 416 (478)
Q Consensus 351 ~~~~~~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~-----~~~~~~~~~~pei~------~~~l~~~~l~~~~~~ 416 (478)
+. .|.+..+|+||+|||||.| .|.++.++... .|+.+... .|+.. ...+...++...+.|
T Consensus 363 g~-----~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~-~~~~i~S~l~~~~~l~~~lla~I~~~ 436 (737)
T PRK02362 363 GM-----QPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIWA-DPEDVRSKLATEPALRTHVLSTIASG 436 (737)
T ss_pred Cc-----eeCCHHHHHHHhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHhC-CCCceeecCCChhhHHHHHHHHHHhC
Confidence 43 4899999999999999999 49999999653 13333221 12211 124666777777666
Q ss_pred CCCCCC-------ccCCCC------CCHHHHHHHHHHHHHCCCCCCCCC---CCHHHHHHhccCCCCHhhhchhee
Q 011751 417 VDDIIG-------FDFMEK------PSRASIIKSLEQLFLLGALTDDCK---LSDPVGHQMARLPLDPIYSKALIV 476 (478)
Q Consensus 417 ~~~~~~-------~~~~~~------p~~~~l~~al~~L~~~g~l~~~~~---~t~~lG~~~~~~~~~p~~~~~l~~ 476 (478)
.....+ ..|+.. ...+.++.+++.|++.|+|+.+++ +|+ +|++++.+|++|..++.+..
T Consensus 437 ~~~~~~d~~~~l~~Tf~~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~~t~-lG~~~s~~~l~~~t~~~~~~ 511 (737)
T PRK02362 437 FARTRDGLLEFLEATFYATQTDDTGRLERVVDDVLDFLERNGMIEEDGETLEATE-LGHLVSRLYIDPLSAAEIID 511 (737)
T ss_pred ccCCHHHHHHHHHhChHHhhccchHHHHHHHHHHHHHHHHCCCeeecCCeEeECh-HHHHHHHhcCCHHHHHHHHH
Confidence 422211 133222 234568999999999999987754 897 99999999999999988754
No 14
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=3.6e-45 Score=387.53 Aligned_cols=409 Identities=19% Similarity=0.213 Sum_probs=269.6
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEE
Q 011751 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRV 91 (478)
Q Consensus 12 ~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~v 91 (478)
.+.++++|.++++.+.+|++++++||||||||+++.+++.+.... +.+++++.|+++++.+..+.+.+.. ..+..+
T Consensus 20 ~~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--~~k~v~i~P~raLa~q~~~~~~~l~--~~g~~v 95 (674)
T PRK01172 20 DFELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--GLKSIYIVPLRSLAMEKYEELSRLR--SLGMRV 95 (674)
T ss_pred CCCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh--CCcEEEEechHHHHHHHHHHHHHHh--hcCCeE
Confidence 466899999999999999999999999999998888877765433 4568888899999999999887543 234555
Q ss_pred EEEEeecc-----------cCChhhhHHHHhhC--cCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccCCCCC
Q 011751 92 GYSIRFDD-----------RTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNG 158 (478)
Q Consensus 92 g~~~~~~~-----------~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 158 (478)
+...+... ...+..+...++.. ..+.+++++|+||+|.. ++
T Consensus 96 ~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l--------------------------~d 149 (674)
T PRK01172 96 KISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHII--------------------------GD 149 (674)
T ss_pred EEEeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhc--------------------------cC
Confidence 54332211 11222333333322 34789999999999942 12
Q ss_pred CCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC-ChhHHHhhhCCCCeEEeCCccccceEEec--CCC--
Q 011751 159 NNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQFPVEILYT--LYP-- 233 (478)
Q Consensus 159 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-- 233 (478)
+.+|..++.++. ++.. ..++.|+|+||||+ |.+++++|++.. .+....+..|+..... ...
T Consensus 150 ~~rg~~le~ll~------------~~~~-~~~~~riI~lSATl~n~~~la~wl~~~-~~~~~~r~vpl~~~i~~~~~~~~ 215 (674)
T PRK01172 150 EDRGPTLETVLS------------SARY-VNPDARILALSATVSNANELAQWLNAS-LIKSNFRPVPLKLGILYRKRLIL 215 (674)
T ss_pred CCccHHHHHHHH------------HHHh-cCcCCcEEEEeCccCCHHHHHHHhCCC-ccCCCCCCCCeEEEEEecCeeee
Confidence 222222222221 1110 11568999999999 999999999754 3333444455443221 110
Q ss_pred --CcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCC----------------CCCCeEEEEccC
Q 011751 234 --EPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPE----------------ASRKLVTVPIFS 295 (478)
Q Consensus 234 --~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~----------------~~~~~~v~~~h~ 295 (478)
...........+... ..+++++||||+++++++.++..|.+.+..... ......+..+||
T Consensus 216 ~~~~~~~~~~~~~i~~~--~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~ha 293 (674)
T PRK01172 216 DGYERSQVDINSLIKET--VNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHA 293 (674)
T ss_pred cccccccccHHHHHHHH--HhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecC
Confidence 000000011111111 134789999999999999999999876432110 001135788999
Q ss_pred CCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCC
Q 011751 296 SLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGRE 375 (478)
Q Consensus 296 ~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~ 375 (478)
+|++++|..+++.|++|.++|||||+++++|+|+|+..+||+ ....|+.. ...|.|..+|.||+|||||.
T Consensus 294 gl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~----~~~~~~~~------~~~~~s~~~~~Qm~GRAGR~ 363 (674)
T PRK01172 294 GLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVR----DITRYGNG------GIRYLSNMEIKQMIGRAGRP 363 (674)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEc----CceEeCCC------CceeCCHHHHHHHhhcCCCC
Confidence 999999999999999999999999999999999999988885 33444421 12478999999999999999
Q ss_pred C---CCeEEEecCH-h---hHhccc-CCCCCc---ccc-cCchHHHHHHHHcCCC----CCCCc---cCC--CCCC---H
Q 011751 376 G---PGKCFRLYPE-N---EFDKLE-DSTKPE---IKR-CNLSNVILQLKALGVD----DIIGF---DFM--EKPS---R 431 (478)
Q Consensus 376 ~---~G~~~~l~~~-~---~~~~~~-~~~~pe---i~~-~~l~~~~l~~~~~~~~----~~~~~---~~~--~~p~---~ 431 (478)
| .|.++.+... + .+.++. ....|- +.. ......+|...+.|.. +...+ .|+ ..++ .
T Consensus 364 g~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~~~~~l~ 443 (674)
T PRK01172 364 GYDQYGIGYIYAASPASYDAAKKYLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQNGVDEID 443 (674)
T ss_pred CCCCcceEEEEecCcccHHHHHHHHcCCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhcCchHHHH
Confidence 8 6777776642 2 223332 222221 111 1222234555555542 22222 333 3222 5
Q ss_pred HHHHHHHHHHHHCCCCCCCC--CCCHHHHHHhccCCCCHhhhchheec
Q 011751 432 ASIIKSLEQLFLLGALTDDC--KLSDPVGHQMARLPLDPIYSKALIVA 477 (478)
Q Consensus 432 ~~l~~al~~L~~~g~l~~~~--~~t~~lG~~~~~~~~~p~~~~~l~~~ 477 (478)
+.++.+++.|.+.|+|+.++ .+|+ +|++++.+|++|..++.+..+
T Consensus 444 ~~v~~~l~~L~~~~~i~~~~~~~~t~-lG~~~s~~~l~~~t~~~~~~~ 490 (674)
T PRK01172 444 YYIESSLKFLKENGFIKGDVTLRATR-LGKLTSDLYIDPESALILKSA 490 (674)
T ss_pred HHHHHHHHHHHHCCCcccCCcEeECH-HHHHHHHhCCCHHHHHHHHHH
Confidence 67899999999999998654 5796 999999999999999987643
No 15
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-44 Score=352.36 Aligned_cols=317 Identities=21% Similarity=0.321 Sum_probs=243.3
Q ss_pred hHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--hHHHHHHhhcC----c-cCCCcEEEEecchHHHHHHHHH
Q 011751 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAG----F-CRDGKLIGVTQPRRVAAVTVAK 77 (478)
Q Consensus 5 ~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT--~~~~~~~~~~~----~-~~~~~~i~~~~p~~~l~~~~~~ 77 (478)
.++..++.-.++++|.+.|+.+++|++++.+|.|||||| +++|.+..... . ..++..++++.|||+|+.|+.+
T Consensus 104 ~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~ 183 (519)
T KOG0331|consen 104 KALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQA 183 (519)
T ss_pred HHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHH
Confidence 344556666789999999999999999999999999999 67777665432 1 2236789999999999999998
Q ss_pred HHHHHhCCcCCCEEEEEEe--------------ecccCChhhhHHHHhhC--cCcCCCcceEeecccccchhhhHHHHHH
Q 011751 78 RVAEESGVELGQRVGYSIR--------------FDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLL 141 (478)
Q Consensus 78 ~~~~~~~~~~~~~vg~~~~--------------~~~~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~r~~~~~~~l~~l 141 (478)
...++.. ......-+..+ .+....+..++..++.. ..++++.++|+|||
T Consensus 184 ~~~~~~~-~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEA-------------- 248 (519)
T KOG0331|consen 184 EAREFGK-SLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEA-------------- 248 (519)
T ss_pred HHHHHcC-CCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccH--------------
Confidence 7765544 33321111111 12233455566666654 45789999999999
Q ss_pred HHHHHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC--ChhHHH-hhhCCCCeEEe
Q 011751 142 KKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFS-EYFGCAKAVHV 218 (478)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~--~~~~~~-~~~~~~~~~~~ 218 (478)
|+|+|++|..+++.++..+++ ++.|+++.|||+ .++.++ +|++++..+.+
T Consensus 249 ------------------------DrMldmGFe~qI~~Il~~i~~---~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~i 301 (519)
T KOG0331|consen 249 ------------------------DRMLDMGFEPQIRKILSQIPR---PDRQTLMFSATWPKEVRQLAEDFLNNPIQINV 301 (519)
T ss_pred ------------------------HhhhccccHHHHHHHHHhcCC---CcccEEEEeeeccHHHHHHHHHHhcCceEEEe
Confidence 699999999999999999964 455899999999 555666 56664433333
Q ss_pred CCc-----cccceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEc
Q 011751 219 QGR-----QFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPI 293 (478)
Q Consensus 219 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~ 293 (478)
.+. .+.+.......+.. -....+..++.......++++||||.|++.|++++..+++. ++.+..+
T Consensus 302 g~~~~~~a~~~i~qive~~~~~-~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~---------~~~a~~i 371 (519)
T KOG0331|consen 302 GNKKELKANHNIRQIVEVCDET-AKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRK---------GWPAVAI 371 (519)
T ss_pred cchhhhhhhcchhhhhhhcCHH-HHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhc---------Ccceeee
Confidence 322 12222222222222 22333444444444567899999999999999999999986 7899999
Q ss_pred cCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccC
Q 011751 294 FSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAG 373 (478)
Q Consensus 294 h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaG 373 (478)
||+.++.+|+.+++.|++|+..||||||+|++|+|+|+|++||| || +|.+.++|+||+||+|
T Consensus 372 HGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIn--------yd----------fP~~vEdYVHRiGRTG 433 (519)
T KOG0331|consen 372 HGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVIN--------YD----------FPNNVEDYVHRIGRTG 433 (519)
T ss_pred cccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEe--------CC----------CCCCHHHHHhhcCccc
Confidence 99999999999999999999999999999999999999999999 88 6999999999999999
Q ss_pred CCC-CCeEEEecCHhhHhc
Q 011751 374 REG-PGKCFRLYPENEFDK 391 (478)
Q Consensus 374 R~~-~G~~~~l~~~~~~~~ 391 (478)
|.| .|.++.+++...+..
T Consensus 434 Ra~~~G~A~tfft~~~~~~ 452 (519)
T KOG0331|consen 434 RAGKKGTAITFFTSDNAKL 452 (519)
T ss_pred cCCCCceEEEEEeHHHHHH
Confidence 988 999999999887654
No 16
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.7e-42 Score=368.69 Aligned_cols=414 Identities=16% Similarity=0.178 Sum_probs=274.6
Q ss_pred chhHHHhhhcCCcHHHHHHHHHH-HhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHH
Q 011751 3 RQKILQQRKSLPIASVEKRLVEE-VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 81 (478)
Q Consensus 3 ~~~~~~~~~~~~~~~~q~~~~~~-l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~ 81 (478)
+.+.++..+.-.++++|.++++. +.+|+++++++|||||||.++..+++..... .+.+++++.|+++++.+..+++..
T Consensus 12 ~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~-~~~~~l~l~P~~aLa~q~~~~~~~ 90 (720)
T PRK00254 12 IKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR-EGGKAVYLVPLKALAEEKYREFKD 90 (720)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh-cCCeEEEEeChHHHHHHHHHHHHH
Confidence 34555666666789999999986 8999999999999999998887777655433 355788999999999999988865
Q ss_pred HhCCcCCCEEEEEEeec-----------ccCChhhhHHHHhhC--cCcCCCcceEeecccccchhhhHHHHHHHHHHHhh
Q 011751 82 ESGVELGQRVGYSIRFD-----------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (478)
Q Consensus 82 ~~~~~~~~~vg~~~~~~-----------~~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~ 148 (478)
.. ..+..++...+.. ..+.+..++..++.. .++++++++|+||+|
T Consensus 91 ~~--~~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H-------------------- 148 (720)
T PRK00254 91 WE--KLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIH-------------------- 148 (720)
T ss_pred Hh--hcCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcC--------------------
Confidence 32 2344444322111 112333344444332 467899999999999
Q ss_pred cccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC-ChhHHHhhhCCCCeEEeCCccccceE
Q 011751 149 SKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQFPVEI 227 (478)
Q Consensus 149 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (478)
.+.+..++..++.++.++. .+.|+|++|||+ |++++++|++... +....++.+...
T Consensus 149 ------------------~l~~~~rg~~le~il~~l~----~~~qiI~lSATl~n~~~la~wl~~~~-~~~~~rpv~l~~ 205 (720)
T PRK00254 149 ------------------LIGSYDRGATLEMILTHML----GRAQILGLSATVGNAEELAEWLNAEL-VVSDWRPVKLRK 205 (720)
T ss_pred ------------------ccCCccchHHHHHHHHhcC----cCCcEEEEEccCCCHHHHHHHhCCcc-ccCCCCCCccee
Confidence 3333344444444444433 567999999999 9999999998642 222233333321
Q ss_pred --EecC-----CCC-cchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCC----------------
Q 011751 228 --LYTL-----YPE-PDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPE---------------- 283 (478)
Q Consensus 228 --~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~---------------- 283 (478)
.+.. ... ..+.......+..... .++++||||+|++.++.++..|.+.+.....
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (720)
T PRK00254 206 GVFYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEE 283 (720)
T ss_pred eEecCCeeeccCcchhcchHHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhc
Confidence 1111 010 1111222223333332 3788999999999999998887654321100
Q ss_pred --------CCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccc
Q 011751 284 --------ASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESL 355 (478)
Q Consensus 284 --------~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~ 355 (478)
......+..+||+|++++|..+++.|++|.++|||||+++++|||+|++++||. ....|+ ..+.
T Consensus 284 ~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~----~~~~~~-~~~~--- 355 (720)
T PRK00254 284 NPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIR----DTKRYS-NFGW--- 355 (720)
T ss_pred CCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEEC----CceEcC-CCCc---
Confidence 001235889999999999999999999999999999999999999999999996 334454 2222
Q ss_pred eeeecCHHHHHHhhcccCCCC---CCeEEEecCHhh----HhcccCCCCCccc------ccCchHHHHHHHHcCC-CCCC
Q 011751 356 LVVPISKAQALQRSGRAGREG---PGKCFRLYPENE----FDKLEDSTKPEIK------RCNLSNVILQLKALGV-DDII 421 (478)
Q Consensus 356 ~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~----~~~~~~~~~pei~------~~~l~~~~l~~~~~~~-~~~~ 421 (478)
.+.+..+|.||+|||||.| .|.++.+.+.+. ++.+... .|+.. .+.+...++.....+. .+..
T Consensus 356 --~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~~~~~-~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~ 432 (720)
T PRK00254 356 --EDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMERYIFG-KPEKLFSMLSNESAFRSQVLALITNFGVSNFK 432 (720)
T ss_pred --eeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchHHHHHHHHhC-CchhhhccCCchHHHHHHHHHHHHhCCCCCHH
Confidence 3467789999999999987 699999986432 4333221 12221 1234455555555443 2221
Q ss_pred C------ccC--CCCCC----HHHHHHHHHHHHHCCCCCCC--C--CCCHHHHHHhccCCCCHhhhchhee
Q 011751 422 G------FDF--MEKPS----RASIIKSLEQLFLLGALTDD--C--KLSDPVGHQMARLPLDPIYSKALIV 476 (478)
Q Consensus 422 ~------~~~--~~~p~----~~~l~~al~~L~~~g~l~~~--~--~~t~~lG~~~~~~~~~p~~~~~l~~ 476 (478)
. ..| ...|+ .+.++.+++.|.+.++|+.+ + .+|+ +|++++.++++|..++.+..
T Consensus 433 ~~~~~l~~Tf~~~~~~~~~~~~~~v~~~l~~L~~~~~i~~~~~~~~~~t~-lG~~~s~~~i~~~t~~~~~~ 502 (720)
T PRK00254 433 ELVNFLERTFYAHQRKDLYSLEEKAKEIVYFLLENEFIDIDLEDRFIPLP-LGIRTSQLYIDPLTAKKFKD 502 (720)
T ss_pred HHHHHHHhCHHHHhhcChHhHHHHHHHHHHHHHHCCCeEEcCCCCEeeCh-HHHHHHHHhCCHHHHHHHHH
Confidence 1 111 12233 45678899999999999643 2 4686 99999999999999987753
No 17
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.6e-41 Score=345.14 Aligned_cols=313 Identities=20% Similarity=0.232 Sum_probs=229.0
Q ss_pred HHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccC-CCcEEEEecchHHHHHHHHHHHHHHhC
Q 011751 6 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPRRVAAVTVAKRVAEESG 84 (478)
Q Consensus 6 ~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~-~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (478)
.++..+.-.++++|+++++.+.+|++++++||||||||+.+.+.++...... ....++++.|+++++.|+.+.+.....
T Consensus 18 ~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 97 (460)
T PRK11776 18 NLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLAR 97 (460)
T ss_pred HHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence 3444555578999999999999999999999999999977666666544322 244689999999999999988766543
Q ss_pred CcCCCEEEEEEee--------------cccCChhhhHHHHhhC--cCcCCCcceEeecccccchhhhHHHHHHHHHHHhh
Q 011751 85 VELGQRVGYSIRF--------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (478)
Q Consensus 85 ~~~~~~vg~~~~~--------------~~~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~ 148 (478)
...+..+....+. +..+.+..++..++.. ..+.+++++|+||||
T Consensus 98 ~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad-------------------- 157 (460)
T PRK11776 98 FIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD-------------------- 157 (460)
T ss_pred hCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH--------------------
Confidence 2222333221111 1112333444444433 347899999999998
Q ss_pred cccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC--ChhHHHhh-hCCCCeEEeCCcc--c
Q 011751 149 SKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSEY-FGCAKAVHVQGRQ--F 223 (478)
Q Consensus 149 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~--~~~~~~~~-~~~~~~~~~~~~~--~ 223 (478)
.|++.++...+..++..++ ...|++++|||+ ....+.+. +.++..+.+.... .
T Consensus 158 ------------------~~l~~g~~~~l~~i~~~~~----~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~ 215 (460)
T PRK11776 158 ------------------RMLDMGFQDAIDAIIRQAP----ARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLP 215 (460)
T ss_pred ------------------HHhCcCcHHHHHHHHHhCC----cccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCC
Confidence 4555555555555555554 667999999999 34455544 4444444443322 2
Q ss_pred cceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHH
Q 011751 224 PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQM 303 (478)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~ 303 (478)
.++..+...+..+ ....+..+.....++++||||++++.++.+++.|.+. ++.+..+||+|++.+|+
T Consensus 216 ~i~~~~~~~~~~~----k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~---------~~~v~~~hg~~~~~eR~ 282 (460)
T PRK11776 216 AIEQRFYEVSPDE----RLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQ---------GFSALALHGDLEQRDRD 282 (460)
T ss_pred CeeEEEEEeCcHH----HHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhC---------CCcEEEEeCCCCHHHHH
Confidence 2444444443333 2333444444455778999999999999999999886 78899999999999999
Q ss_pred hhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEE
Q 011751 304 RVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFR 382 (478)
Q Consensus 304 ~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~ 382 (478)
.+++.|++|..+|||||+++++|+|+|++++||+ || .|.+..+|+||+|||||.| .|.|+.
T Consensus 283 ~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~--------~d----------~p~~~~~yiqR~GRtGR~g~~G~ai~ 344 (460)
T PRK11776 283 QVLVRFANRSCSVLVATDVAARGLDIKALEAVIN--------YE----------LARDPEVHVHRIGRTGRAGSKGLALS 344 (460)
T ss_pred HHHHHHHcCCCcEEEEecccccccchhcCCeEEE--------ec----------CCCCHhHhhhhcccccCCCCcceEEE
Confidence 9999999999999999999999999999999999 66 5889999999999999999 899999
Q ss_pred ecCHhhHhc
Q 011751 383 LYPENEFDK 391 (478)
Q Consensus 383 l~~~~~~~~ 391 (478)
++++++...
T Consensus 345 l~~~~e~~~ 353 (460)
T PRK11776 345 LVAPEEMQR 353 (460)
T ss_pred EEchhHHHH
Confidence 998775433
No 18
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=4.9e-41 Score=345.08 Aligned_cols=314 Identities=19% Similarity=0.263 Sum_probs=218.8
Q ss_pred hHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhH--HHHHHhhcC----ccCCCcEEEEecchHHHHHHHHHH
Q 011751 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQ--LPQFLFHAG----FCRDGKLIGVTQPRRVAAVTVAKR 78 (478)
Q Consensus 5 ~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~--~~~~~~~~~----~~~~~~~i~~~~p~~~l~~~~~~~ 78 (478)
+.+...+.-.++++|.++++.+.+|++++++||||||||.. +|.+..... ....+..+++++|+++|+.|+.+.
T Consensus 143 ~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~ 222 (545)
T PTZ00110 143 KSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQ 222 (545)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHH
Confidence 44455556679999999999999999999999999999954 444332111 112356799999999999999887
Q ss_pred HHHHhCCcCCCEEEEEEee--------------cccCChhhhHHHHhhC--cCcCCCcceEeecccccchhhhHHHHHHH
Q 011751 79 VAEESGVELGQRVGYSIRF--------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLK 142 (478)
Q Consensus 79 ~~~~~~~~~~~~vg~~~~~--------------~~~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~r~~~~~~~l~~l~ 142 (478)
+.+... ..+..+...... +..+.+..++..++.. ..+.++++||+||||
T Consensus 223 ~~~~~~-~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd-------------- 287 (545)
T PTZ00110 223 CNKFGA-SSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEAD-------------- 287 (545)
T ss_pred HHHHhc-ccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHH--------------
Confidence 765433 222222211111 1122334444444433 357889999999998
Q ss_pred HHHHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCC--hhHHHhhh-CCCCe-EEe
Q 011751 143 KVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLD--ARGFSEYF-GCAKA-VHV 218 (478)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~--~~~~~~~~-~~~~~-~~~ 218 (478)
.|++.++...+..++..+. ++.|++++|||++ .+.+++.+ ...++ +.+
T Consensus 288 ------------------------~mld~gf~~~i~~il~~~~----~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~v 339 (545)
T PTZ00110 288 ------------------------RMLDMGFEPQIRKIVSQIR----PDRQTLMWSATWPKEVQSLARDLCKEEPVHVNV 339 (545)
T ss_pred ------------------------hhhhcchHHHHHHHHHhCC----CCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEE
Confidence 4455554444444444443 6789999999993 44555444 33332 222
Q ss_pred CCcc----ccceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcc
Q 011751 219 QGRQ----FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIF 294 (478)
Q Consensus 219 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h 294 (478)
.... ..+...+......+.... +..++.... ...+++||||++++.|+.+++.|+.. ++.+..+|
T Consensus 340 g~~~l~~~~~i~q~~~~~~~~~k~~~-L~~ll~~~~-~~~~k~LIF~~t~~~a~~l~~~L~~~---------g~~~~~ih 408 (545)
T PTZ00110 340 GSLDLTACHNIKQEVFVVEEHEKRGK-LKMLLQRIM-RDGDKILIFVETKKGADFLTKELRLD---------GWPALCIH 408 (545)
T ss_pred CCCccccCCCeeEEEEEEechhHHHH-HHHHHHHhc-ccCCeEEEEecChHHHHHHHHHHHHc---------CCcEEEEE
Confidence 2111 122222221122222222 222222221 14779999999999999999999865 78889999
Q ss_pred CCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCC
Q 011751 295 SSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGR 374 (478)
Q Consensus 295 ~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR 374 (478)
|++++++|..+++.|++|+.+|||||+++++|+|+|+|++||+ || .|.+.++|+||+|||||
T Consensus 409 g~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~--------~d----------~P~s~~~yvqRiGRtGR 470 (545)
T PTZ00110 409 GDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVIN--------FD----------FPNQIEDYVHRIGRTGR 470 (545)
T ss_pred CCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEE--------eC----------CCCCHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999 77 58899999999999999
Q ss_pred CC-CCeEEEecCHhhHh
Q 011751 375 EG-PGKCFRLYPENEFD 390 (478)
Q Consensus 375 ~~-~G~~~~l~~~~~~~ 390 (478)
.| .|.++.++++++..
T Consensus 471 ~G~~G~ai~~~~~~~~~ 487 (545)
T PTZ00110 471 AGAKGASYTFLTPDKYR 487 (545)
T ss_pred CCCCceEEEEECcchHH
Confidence 99 99999999877543
No 19
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-41 Score=311.39 Aligned_cols=310 Identities=20% Similarity=0.284 Sum_probs=240.8
Q ss_pred hHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCC-CcEEEEecchHHHHHHHHHHHHHHh
Q 011751 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD-GKLIGVTQPRRVAAVTVAKRVAEES 83 (478)
Q Consensus 5 ~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~-~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (478)
+..+...+-.++++|+++++.+..|++++..|.||||||-.+.+.+++..+..+ ...++++.|+|+++.|+++.+. .+
T Consensus 74 ~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe-~L 152 (476)
T KOG0330|consen 74 EACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFE-AL 152 (476)
T ss_pred HHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHH-Hh
Confidence 334444566789999999999999999999999999999666666666555433 4579999999999999998764 34
Q ss_pred CCcCCCEEEEEEeecc--------------cCChhhhHHHHhhC---cCcCCCcceEeecccccchhhhHHHHHHHHHHH
Q 011751 84 GVELGQRVGYSIRFDD--------------RTSTSTRIKEALLD---PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQN 146 (478)
Q Consensus 84 ~~~~~~~vg~~~~~~~--------------~~~~~~~~~~~l~~---~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~ 146 (478)
+...|..+...+++.+ .+.+..++...+.+ -.+.+++++|+|||
T Consensus 153 g~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEA------------------- 213 (476)
T KOG0330|consen 153 GSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEA------------------- 213 (476)
T ss_pred ccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchH-------------------
Confidence 4444554443333222 23445566555553 34788999999999
Q ss_pred hhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC--ChhHHHh-hhCCCCeEEeCCccc
Q 011751 147 ARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSE-YFGCAKAVHVQGRQF 223 (478)
Q Consensus 147 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~--~~~~~~~-~~~~~~~~~~~~~~~ 223 (478)
|+++|+.|+..+..+++.++ ...|.+++|||+ ++.++.. -+.++..+.+.....
T Consensus 214 -------------------DrlLd~dF~~~ld~ILk~ip----~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~ 270 (476)
T KOG0330|consen 214 -------------------DRLLDMDFEEELDYILKVIP----RERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQ 270 (476)
T ss_pred -------------------HhhhhhhhHHHHHHHHHhcC----ccceEEEEEeecchhhHHHHhhccCCCeEEeccchhc
Confidence 58999999999888998888 778999999999 5666653 233333444444332
Q ss_pred c---ceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHH
Q 011751 224 P---VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSE 300 (478)
Q Consensus 224 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~ 300 (478)
. +...|+..+..+.... ++++.....++++||||++...++.++-.|+.. ++...++||+|+++
T Consensus 271 tv~~lkQ~ylfv~~k~K~~y----LV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~l---------g~~a~~LhGqmsq~ 337 (476)
T KOG0330|consen 271 TVDHLKQTYLFVPGKDKDTY----LVYLLNELAGNSVIVFCNTCNTTRFLALLLRNL---------GFQAIPLHGQMSQS 337 (476)
T ss_pred chHHhhhheEeccccccchh----HHHHHHhhcCCcEEEEEeccchHHHHHHHHHhc---------CcceecccchhhHH
Confidence 2 3455555554433222 233333445789999999999999999999987 99999999999999
Q ss_pred HHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCe
Q 011751 301 QQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGK 379 (478)
Q Consensus 301 ~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~ 379 (478)
.|...++.|++|.+.||+|||++++|+|+|.|++||| || .|.+..+|+||+||+||.| +|+
T Consensus 338 ~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVN--------yD----------iP~~skDYIHRvGRtaRaGrsG~ 399 (476)
T KOG0330|consen 338 KRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVN--------YD----------IPTHSKDYIHRVGRTARAGRSGK 399 (476)
T ss_pred HHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEe--------cC----------CCCcHHHHHHHcccccccCCCcc
Confidence 9999999999999999999999999999999999999 98 7899999999999999999 999
Q ss_pred EEEecCHhh
Q 011751 380 CFRLYPENE 388 (478)
Q Consensus 380 ~~~l~~~~~ 388 (478)
++.|++.-+
T Consensus 400 ~ItlVtqyD 408 (476)
T KOG0330|consen 400 AITLVTQYD 408 (476)
T ss_pred eEEEEehhh
Confidence 999998743
No 20
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.3e-41 Score=340.52 Aligned_cols=311 Identities=21% Similarity=0.308 Sum_probs=241.8
Q ss_pred hHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCc--cCCCcE-EEEecchHHHHHHHHHHHHH
Q 011751 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF--CRDGKL-IGVTQPRRVAAVTVAKRVAE 81 (478)
Q Consensus 5 ~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~--~~~~~~-i~~~~p~~~l~~~~~~~~~~ 81 (478)
+.+...++-.++++|.++++.+..|+++++.|+||||||..+.+.+++... ...... ++++.|||+|+.|+.+.+..
T Consensus 42 ~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~ 121 (513)
T COG0513 42 QALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRK 121 (513)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHH
Confidence 344455666799999999999999999999999999999665555555432 122222 89999999999999998766
Q ss_pred HhCCcCCCEEEEEEee--------------cccCChhhhHHHHhhCc--CcCCCcceEeecccccchhhhHHHHHHHHHH
Q 011751 82 ESGVELGQRVGYSIRF--------------DDRTSTSTRIKEALLDP--YLSRYSAIIVDEAHERTVHTDVLLGLLKKVQ 145 (478)
Q Consensus 82 ~~~~~~~~~vg~~~~~--------------~~~~~~~~~~~~~l~~~--~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~ 145 (478)
......+..+....++ +..+.++.++..++... .++++.++|+|||
T Consensus 122 ~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEA------------------ 183 (513)
T COG0513 122 LGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEA------------------ 183 (513)
T ss_pred HHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccH------------------
Confidence 5543212323333222 22233444555555543 6889999999999
Q ss_pred HhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChh--HHH-hhhCCCCeEEeCC--
Q 011751 146 NARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--GFS-EYFGCAKAVHVQG-- 220 (478)
Q Consensus 146 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~--~~~-~~~~~~~~~~~~~-- 220 (478)
|+|+|++|..++..++..++ .+.|++++|||++.. .++ .++.++..+.+..
T Consensus 184 --------------------DrmLd~Gf~~~i~~I~~~~p----~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~ 239 (513)
T COG0513 184 --------------------DRMLDMGFIDDIEKILKALP----PDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEK 239 (513)
T ss_pred --------------------hhhhcCCCHHHHHHHHHhCC----cccEEEEEecCCCHHHHHHHHHHccCCcEEEEcccc
Confidence 69999999999999999998 588999999999542 333 4566555555542
Q ss_pred ---ccccceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCC
Q 011751 221 ---RQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSL 297 (478)
Q Consensus 221 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l 297 (478)
....++..|......+ .....+..+......+++||||+|+..++.++..|... ++.+..+||+|
T Consensus 240 ~~~~~~~i~q~~~~v~~~~---~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~---------g~~~~~lhG~l 307 (513)
T COG0513 240 LERTLKKIKQFYLEVESEE---EKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKR---------GFKVAALHGDL 307 (513)
T ss_pred ccccccCceEEEEEeCCHH---HHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHC---------CCeEEEecCCC
Confidence 1234555555544433 34555566666566678999999999999999999987 89999999999
Q ss_pred CHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-
Q 011751 298 PSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG- 376 (478)
Q Consensus 298 ~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~- 376 (478)
++++|.++++.|++|..+||||||++++|+|||+|++||| || .|.+.++|+||+||+||.|
T Consensus 308 ~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Vin--------yD----------~p~~~e~yvHRiGRTgRaG~ 369 (513)
T COG0513 308 PQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVIN--------YD----------LPLDPEDYVHRIGRTGRAGR 369 (513)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEE--------cc----------CCCCHHHheeccCccccCCC
Confidence 9999999999999999999999999999999999999999 88 6899999999999999999
Q ss_pred CCeEEEecCHh
Q 011751 377 PGKCFRLYPEN 387 (478)
Q Consensus 377 ~G~~~~l~~~~ 387 (478)
.|.++.|+++.
T Consensus 370 ~G~ai~fv~~~ 380 (513)
T COG0513 370 KGVAISFVTEE 380 (513)
T ss_pred CCeEEEEeCcH
Confidence 99999999864
No 21
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=6.6e-41 Score=320.86 Aligned_cols=406 Identities=19% Similarity=0.222 Sum_probs=282.0
Q ss_pred chhHHHhhhcCCcHHHHHHHHHH-HhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHH
Q 011751 3 RQKILQQRKSLPIASVEKRLVEE-VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 81 (478)
Q Consensus 3 ~~~~~~~~~~~~~~~~q~~~~~~-l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~ 81 (478)
+.++++.++.-.+.|+|.-++++ +.+|+|.+|+.+|+||||.+..++=.... ..++++.++++|..++++|-.+.+.+
T Consensus 205 fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~-l~~g~KmlfLvPLVALANQKy~dF~~ 283 (830)
T COG1202 205 FKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRL-LSGGKKMLFLVPLVALANQKYEDFKE 283 (830)
T ss_pred HHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHH-HhCCCeEEEEehhHHhhcchHHHHHH
Confidence 45677777777889999988887 88999999999999999966555444333 23466899999999999999998877
Q ss_pred HhCCcCCCEEEEEEee------------------cccCChhhhHHHHhhC-cCcCCCcceEeecccccchhhhHHHHHHH
Q 011751 82 ESGVELGQRVGYSIRF------------------DDRTSTSTRIKEALLD-PYLSRYSAIIVDEAHERTVHTDVLLGLLK 142 (478)
Q Consensus 82 ~~~~~~~~~vg~~~~~------------------~~~~~~~~~~~~~l~~-~~l~~~~~lIiDE~H~r~~~~~~~l~~l~ 142 (478)
.+. .++..+...++. +..+.+.+.+..++.. ..+.+++.|||||+|.
T Consensus 284 rYs-~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHt------------- 349 (830)
T COG1202 284 RYS-KLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHT------------- 349 (830)
T ss_pred Hhh-cccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeee-------------
Confidence 663 344444322211 1112233344444443 6799999999999992
Q ss_pred HHHHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC-ChhHHHhhhCCCCeEEeCCc
Q 011751 143 KVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGR 221 (478)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~-~~~~~~~~~~~~~~~~~~~~ 221 (478)
..+..+|+++|=++.+.+ ++. ++.|+|.+|||+ |++++++.++ ...+..+++
T Consensus 350 -------------L~deERG~RLdGLI~RLr---------~l~----~~AQ~i~LSATVgNp~elA~~l~-a~lV~y~~R 402 (830)
T COG1202 350 -------------LEDEERGPRLDGLIGRLR---------YLF----PGAQFIYLSATVGNPEELAKKLG-AKLVLYDER 402 (830)
T ss_pred -------------ccchhcccchhhHHHHHH---------HhC----CCCeEEEEEeecCChHHHHHHhC-CeeEeecCC
Confidence 233344444444433311 111 778999999999 9999999997 457777888
Q ss_pred cccceEEecCCC-CcchHHHHHHHHHHhh----hcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCC
Q 011751 222 QFPVEILYTLYP-EPDYLDATLITIFQVH----LDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSS 296 (478)
Q Consensus 222 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~ 296 (478)
+.|++-|..... +.+..+.....+.... ...-.|++|||.+|+..|+.+++.|... ++.+.+||+|
T Consensus 403 PVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~k---------G~~a~pYHaG 473 (830)
T COG1202 403 PVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGK---------GLKAAPYHAG 473 (830)
T ss_pred CCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcC---------CcccccccCC
Confidence 888876654433 2222222222222212 2223789999999999999999999876 8999999999
Q ss_pred CCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC
Q 011751 297 LPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG 376 (478)
Q Consensus 297 l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~ 376 (478)
|+..+|+.++..|.++.+.++|+|..++.|||+|+-.+|+.+= .|...|.|+.+|.||.|||||++
T Consensus 474 L~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsL--------------aMG~~WLs~~EF~QM~GRAGRp~ 539 (830)
T COG1202 474 LPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESL--------------AMGIEWLSVREFQQMLGRAGRPD 539 (830)
T ss_pred CcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHH--------------HcccccCCHHHHHHHhcccCCCC
Confidence 9999999999999999999999999999999999988777522 23346999999999999999999
Q ss_pred ---CCeEEEecCH-hhHhc-c------------cCCCCCcccccC---chHHHHHHHHcCCCCCCC-ccCCC--C-CCHH
Q 011751 377 ---PGKCFRLYPE-NEFDK-L------------EDSTKPEIKRCN---LSNVILQLKALGVDDIIG-FDFME--K-PSRA 432 (478)
Q Consensus 377 ---~G~~~~l~~~-~~~~~-~------------~~~~~pei~~~~---l~~~~l~~~~~~~~~~~~-~~~~~--~-p~~~ 432 (478)
.|++|.+..+ ..|.. | .....|-+...+ -.+-+|. ..++.+..+ ..-+. + ...-
T Consensus 540 yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~vLA--~~~v~~s~~~i~~v~~~~~g~~~ 617 (830)
T COG1202 540 YHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESEPEPVIVEYDEEDEEENVLA--SAGVTNSLSVIERVNSLMLGAAF 617 (830)
T ss_pred cccCceEEEEecCChhhcccccccHHHHHHHHhcCCCCcceeccCcHHHHHHHHH--HhhhcCcHHHHhhcChhhccccC
Confidence 8999999842 23332 1 111122122211 1222332 222222111 00000 0 0112
Q ss_pred HHHHHHHHHHHCCCCCCCC---CCCHHHHHHhccCCCCHhhhchhee
Q 011751 433 SIIKSLEQLFLLGALTDDC---KLSDPVGHQMARLPLDPIYSKALIV 476 (478)
Q Consensus 433 ~l~~al~~L~~~g~l~~~~---~~t~~lG~~~~~~~~~p~~~~~l~~ 476 (478)
..+.+++.|++.|+|+.+| ++|+ .|++++...+.|.-|..|-+
T Consensus 618 ~~~k~l~~Lee~g~i~~~G~~v~~T~-yGrava~~Fl~p~~a~~Ir~ 663 (830)
T COG1202 618 DPKKALSKLEEYGMIKKKGNIVRPTP-YGRAVAMSFLGPSEAEFIRE 663 (830)
T ss_pred CHHHHHHHHHhcCCeeccCCEeeecc-ccceeEEeecCchHHHHHHH
Confidence 3478999999999999876 6896 99999999999999887643
No 22
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.2e-40 Score=335.16 Aligned_cols=315 Identities=17% Similarity=0.209 Sum_probs=220.1
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCc--------cCCCcEEEEecchHHHHHHH
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF--------CRDGKLIGVTQPRRVAAVTV 75 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~--------~~~~~~i~~~~p~~~l~~~~ 75 (478)
++.+...+.-.++++|+++++.+..|++++++||||||||..+...++.... ...+..++++.|+++++.|+
T Consensus 20 ~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi 99 (423)
T PRK04837 20 VEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQI 99 (423)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHH
Confidence 3445555666789999999999999999999999999999655444433221 11246799999999999999
Q ss_pred HHHHHHHhCCcCCCEEEEEEeec--------------ccCChhhhHHHHhhC--cCcCCCcceEeecccccchhhhHHHH
Q 011751 76 AKRVAEESGVELGQRVGYSIRFD--------------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLG 139 (478)
Q Consensus 76 ~~~~~~~~~~~~~~~vg~~~~~~--------------~~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~r~~~~~~~l~ 139 (478)
.+.+..... ..+..++...+.. ..+.+..++..++.. ..+.+++++|+||||.
T Consensus 100 ~~~~~~l~~-~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~---------- 168 (423)
T PRK04837 100 HADAEPLAQ-ATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADR---------- 168 (423)
T ss_pred HHHHHHHhc-cCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHH----------
Confidence 887654433 2344444333221 122333444444432 3578999999999983
Q ss_pred HHHHHHHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCCh--hHHH-hhhCCCCeE
Q 011751 140 LLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RGFS-EYFGCAKAV 216 (478)
Q Consensus 140 ~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~--~~~~-~~~~~~~~~ 216 (478)
+++.++...+..++..++.. ...+.+++|||++. ..+. .++.++..+
T Consensus 169 ----------------------------l~~~~f~~~i~~i~~~~~~~--~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i 218 (423)
T PRK04837 169 ----------------------------MFDLGFIKDIRWLFRRMPPA--NQRLNMLFSATLSYRVRELAFEHMNNPEYV 218 (423)
T ss_pred ----------------------------HhhcccHHHHHHHHHhCCCc--cceeEEEEeccCCHHHHHHHHHHCCCCEEE
Confidence 33333333333333333211 23467899999943 3333 455555444
Q ss_pred EeCCccc---cceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEc
Q 011751 217 HVQGRQF---PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPI 293 (478)
Q Consensus 217 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~ 293 (478)
.+..... .+...+..... ......+..+......+++||||+++..|+.++..|.+. ++.+..+
T Consensus 219 ~v~~~~~~~~~i~~~~~~~~~----~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~---------g~~v~~l 285 (423)
T PRK04837 219 EVEPEQKTGHRIKEELFYPSN----EEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAAD---------GHRVGLL 285 (423)
T ss_pred EEcCCCcCCCceeEEEEeCCH----HHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhC---------CCcEEEe
Confidence 4432221 12222211111 122333444444445788999999999999999999875 7889999
Q ss_pred cCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccC
Q 011751 294 FSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAG 373 (478)
Q Consensus 294 h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaG 373 (478)
||++++++|..+++.|++|+.+|||||+++++|+|+|++++||+ || .|.+.++|+||+||||
T Consensus 286 hg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~--------~d----------~P~s~~~yiqR~GR~g 347 (423)
T PRK04837 286 TGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFN--------YD----------LPDDCEDYVHRIGRTG 347 (423)
T ss_pred cCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEE--------eC----------CCCchhheEecccccc
Confidence 99999999999999999999999999999999999999999999 77 5889999999999999
Q ss_pred CCC-CCeEEEecCHhhHh
Q 011751 374 REG-PGKCFRLYPENEFD 390 (478)
Q Consensus 374 R~~-~G~~~~l~~~~~~~ 390 (478)
|.| .|.++.|+++++..
T Consensus 348 R~G~~G~ai~~~~~~~~~ 365 (423)
T PRK04837 348 RAGASGHSISLACEEYAL 365 (423)
T ss_pred CCCCCeeEEEEeCHHHHH
Confidence 999 99999999887543
No 23
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.9e-40 Score=335.86 Aligned_cols=313 Identities=19% Similarity=0.228 Sum_probs=219.7
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccC-------CCcEEEEecchHHHHHHHH
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-------DGKLIGVTQPRRVAAVTVA 76 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~-------~~~~i~~~~p~~~l~~~~~ 76 (478)
++.+.....-.++++|.++++.+.+++++++++|||||||..+.+.+++..... ...+++++.|+++|+.|+.
T Consensus 13 ~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~ 92 (456)
T PRK10590 13 LRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIG 92 (456)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHH
Confidence 344555666688999999999999999999999999999966555554432211 1236999999999999999
Q ss_pred HHHHHHhCCcCCCEEEEEEee--------------cccCChhhhHHHHhhC--cCcCCCcceEeecccccchhhhHHHHH
Q 011751 77 KRVAEESGVELGQRVGYSIRF--------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGL 140 (478)
Q Consensus 77 ~~~~~~~~~~~~~~vg~~~~~--------------~~~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~r~~~~~~~l~~ 140 (478)
+.+...... .+..+...... +..+.+..++..++.. ..++++++||+||||
T Consensus 93 ~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah------------ 159 (456)
T PRK10590 93 ENVRDYSKY-LNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEAD------------ 159 (456)
T ss_pred HHHHHHhcc-CCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHH------------
Confidence 988765432 22222111111 1112233344333322 357899999999998
Q ss_pred HHHHHHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCC--hhHHHhh-hCCCCeEE
Q 011751 141 LKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLD--ARGFSEY-FGCAKAVH 217 (478)
Q Consensus 141 l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~--~~~~~~~-~~~~~~~~ 217 (478)
.|++.++...+..++..++ ...|++++|||++ ...+..+ +.++..+.
T Consensus 160 --------------------------~ll~~~~~~~i~~il~~l~----~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~ 209 (456)
T PRK10590 160 --------------------------RMLDMGFIHDIRRVLAKLP----AKRQNLLFSATFSDDIKALAEKLLHNPLEIE 209 (456)
T ss_pred --------------------------HHhccccHHHHHHHHHhCC----ccCeEEEEeCCCcHHHHHHHHHHcCCCeEEE
Confidence 3344433333333343333 5678999999994 3455544 44443344
Q ss_pred eCCccc---cceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcc
Q 011751 218 VQGRQF---PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIF 294 (478)
Q Consensus 218 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h 294 (478)
+..... .+...+...... .....+..+.......++||||+++.+++.++..|.+. ++.+..+|
T Consensus 210 ~~~~~~~~~~i~~~~~~~~~~----~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~---------g~~~~~lh 276 (456)
T PRK10590 210 VARRNTASEQVTQHVHFVDKK----RKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKD---------GIRSAAIH 276 (456)
T ss_pred EecccccccceeEEEEEcCHH----HHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHC---------CCCEEEEE
Confidence 332221 122222221111 11222333333445678999999999999999999875 78899999
Q ss_pred CCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCC
Q 011751 295 SSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGR 374 (478)
Q Consensus 295 ~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR 374 (478)
|++++++|..+++.|++|+.+|||||+++++|+|+|+|++||+ || .|.+..+|+||+|||||
T Consensus 277 g~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~--------~~----------~P~~~~~yvqR~GRaGR 338 (456)
T PRK10590 277 GNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVN--------YE----------LPNVPEDYVHRIGRTGR 338 (456)
T ss_pred CCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEE--------eC----------CCCCHHHhhhhcccccc
Confidence 9999999999999999999999999999999999999999999 77 58899999999999999
Q ss_pred CC-CCeEEEecCHhhHh
Q 011751 375 EG-PGKCFRLYPENEFD 390 (478)
Q Consensus 375 ~~-~G~~~~l~~~~~~~ 390 (478)
.| .|.++.++..++..
T Consensus 339 ~g~~G~ai~l~~~~d~~ 355 (456)
T PRK10590 339 AAATGEALSLVCVDEHK 355 (456)
T ss_pred CCCCeeEEEEecHHHHH
Confidence 99 89999999876543
No 24
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.4e-40 Score=340.67 Aligned_cols=314 Identities=18% Similarity=0.222 Sum_probs=217.5
Q ss_pred hHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcC--------ccCCCcEEEEecchHHHHHHHH
Q 011751 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAG--------FCRDGKLIGVTQPRRVAAVTVA 76 (478)
Q Consensus 5 ~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~--------~~~~~~~i~~~~p~~~l~~~~~ 76 (478)
+.+...+...++++|.++++.+..|+++++++|||||||..+.+.++... ....+..++++.|+++|+.|+.
T Consensus 134 ~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~ 213 (518)
T PLN00206 134 LNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVE 213 (518)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHH
Confidence 34444556678999999999999999999999999999954444333221 1123568999999999999987
Q ss_pred HHHHHHhCCcCCCEEEEEEeec--------------ccCChhhhHHHHhhC--cCcCCCcceEeecccccchhhhHHHHH
Q 011751 77 KRVAEESGVELGQRVGYSIRFD--------------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGL 140 (478)
Q Consensus 77 ~~~~~~~~~~~~~~vg~~~~~~--------------~~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~r~~~~~~~l~~ 140 (478)
+.+..... ..+..+.....++ ..+.+..++..++.. ..+.++++||+||||
T Consensus 214 ~~~~~l~~-~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad------------ 280 (518)
T PLN00206 214 DQAKVLGK-GLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVD------------ 280 (518)
T ss_pred HHHHHHhC-CCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHH------------
Confidence 76654432 2222222222111 112333444444433 458899999999998
Q ss_pred HHHHHHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC--ChhHHHhhhCCCCe-EE
Q 011751 141 LKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSEYFGCAKA-VH 217 (478)
Q Consensus 141 l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~--~~~~~~~~~~~~~~-~~ 217 (478)
.|++.++...+..++..+ ++.|++++|||+ +.+.+++++...+. +.
T Consensus 281 --------------------------~ml~~gf~~~i~~i~~~l-----~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~ 329 (518)
T PLN00206 281 --------------------------CMLERGFRDQVMQIFQAL-----SQPQVLLFSATVSPEVEKFASSLAKDIILIS 329 (518)
T ss_pred --------------------------HHhhcchHHHHHHHHHhC-----CCCcEEEEEeeCCHHHHHHHHHhCCCCEEEE
Confidence 445554444444444433 457999999999 44567766654443 33
Q ss_pred eCCcccc---ceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcc
Q 011751 218 VQGRQFP---VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIF 294 (478)
Q Consensus 218 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h 294 (478)
+.....+ +...+......+....... ++... ....+++||||+++..++.++..|.... ++.+..+|
T Consensus 330 ~~~~~~~~~~v~q~~~~~~~~~k~~~l~~-~l~~~-~~~~~~~iVFv~s~~~a~~l~~~L~~~~--------g~~~~~~H 399 (518)
T PLN00206 330 IGNPNRPNKAVKQLAIWVETKQKKQKLFD-ILKSK-QHFKPPAVVFVSSRLGADLLANAITVVT--------GLKALSIH 399 (518)
T ss_pred eCCCCCCCcceeEEEEeccchhHHHHHHH-HHHhh-cccCCCEEEEcCCchhHHHHHHHHhhcc--------CcceEEee
Confidence 3222211 2222222222222222111 11111 1224689999999999999999887531 67889999
Q ss_pred CCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCC
Q 011751 295 SSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGR 374 (478)
Q Consensus 295 ~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR 374 (478)
|++++++|..+++.|++|+.+|||||+++++|+|+|++++||+ || .|.+..+|+||+|||||
T Consensus 400 g~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~--------~d----------~P~s~~~yihRiGRaGR 461 (518)
T PLN00206 400 GEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVII--------FD----------MPNTIKEYIHQIGRASR 461 (518)
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEE--------eC----------CCCCHHHHHHhcccccc
Confidence 9999999999999999999999999999999999999999999 77 58899999999999999
Q ss_pred CC-CCeEEEecCHhhHh
Q 011751 375 EG-PGKCFRLYPENEFD 390 (478)
Q Consensus 375 ~~-~G~~~~l~~~~~~~ 390 (478)
.| .|.++.+++.++..
T Consensus 462 ~g~~G~ai~f~~~~~~~ 478 (518)
T PLN00206 462 MGEKGTAIVFVNEEDRN 478 (518)
T ss_pred CCCCeEEEEEEchhHHH
Confidence 99 89999999877543
No 25
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=100.00 E-value=2.5e-41 Score=336.92 Aligned_cols=427 Identities=36% Similarity=0.568 Sum_probs=363.1
Q ss_pred hHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCC---cEEEEecchHHHHHHHHHHHHH
Q 011751 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDG---KLIGVTQPRRVAAVTVAKRVAE 81 (478)
Q Consensus 5 ~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~---~~i~~~~p~~~l~~~~~~~~~~ 81 (478)
.+..++..+|+..+..++++.+..++.++|-+.||+||||++.+++++.....+. ..+.+.+|++..+..++++++.
T Consensus 369 ~~~a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~ 448 (1282)
T KOG0921|consen 369 KITAQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVAN 448 (1282)
T ss_pred hhhhhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHH
Confidence 4567788899999999999999999999999999999999999999988776542 3478999999999999999999
Q ss_pred HhCCcCCCEEEEEEeecccCChhhhHH---------HHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccc
Q 011751 82 ESGVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSA 152 (478)
Q Consensus 82 ~~~~~~~~~vg~~~~~~~~~~~~~~~~---------~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~ 152 (478)
+.+..++.++||.+++++.++...... ..+ ..-+..+.++|+||.|+|+..+|+++.+++.+....
T Consensus 449 er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~-e~glrg~sh~i~deiherdv~~dfll~~lr~m~~ty---- 523 (1282)
T KOG0921|consen 449 ERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMM-ENGLRGISHVIIDEIHERDVDTDFVLIVLREMISTY---- 523 (1282)
T ss_pred hhHHhhcccccccccccccccccccceeeeccchhhhhh-hhcccccccccchhhhhhccchHHHHHHHHhhhccc----
Confidence 999999999999999998776554432 222 134677999999999999999999999999887654
Q ss_pred cCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChhHHHhhhCCCCeEEeCCccccceEEecCC
Q 011751 153 DGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLY 232 (478)
Q Consensus 153 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (478)
+++++++||||+|.+.|..||+..+.+.+.++.+|+..++..+
T Consensus 524 -------------------------------------~dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led 566 (1282)
T KOG0921|consen 524 -------------------------------------RDLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLED 566 (1282)
T ss_pred -------------------------------------hhhhhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHH
Confidence 7789999999999999999999988888888777765443221
Q ss_pred ----------------------CCc---c-------------h----------------HHHHHHHHH-HhhhcCCCCCE
Q 011751 233 ----------------------PEP---D-------------Y----------------LDATLITIF-QVHLDEAPGDI 257 (478)
Q Consensus 233 ----------------------~~~---~-------------~----------------~~~~~~~~~-~~~~~~~~~~~ 257 (478)
..+ + + ....+..+. ++....-.|-|
T Consensus 567 ~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gai 646 (1282)
T KOG0921|consen 567 IIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAV 646 (1282)
T ss_pred hhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccce
Confidence 000 0 0 001111222 22222336789
Q ss_pred EEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEe
Q 011751 258 LVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVID 337 (478)
Q Consensus 258 LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~ 337 (478)
+||.|....+..+..++... ........+.+++.|+.+...++.++++..+.|..++|++|++++..+++.++.+|||
T Consensus 647 lvflpgwa~i~~L~~~ll~~--~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid 724 (1282)
T KOG0921|consen 647 LVFLPGWAEIMTLCNRLLEH--QEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVID 724 (1282)
T ss_pred eeecCchHHhhhhhhhhhhh--hhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEe
Confidence 99999999999998887654 2233444788999999999999999999999999999999999999999999999999
Q ss_pred CCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCCCCeEEEecCHhhHhcccCCCCCcccccCchHHHHHHHHcCC
Q 011751 338 PGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKLEDSTKPEIKRCNLSNVILQLKALGV 417 (478)
Q Consensus 338 ~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~pei~~~~l~~~~l~~~~~~~ 417 (478)
.+..+.+.|-....+....+.|.|+-+..||.||+||..+|.|+++++.-.|+.+.++..||+.+.++++..|..|.+..
T Consensus 725 ~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~~l~~~~t~em~r~plhemalTikll~l 804 (1282)
T KOG0921|consen 725 SCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEALEDHGTAEMFRTPLHEIALTIKLLRL 804 (1282)
T ss_pred eeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHHHHHHhcCcHhhhcCccHHHHhhHHHHHh
Confidence 99999999988888888899999999999999999999999999999999999999999999999999999999988776
Q ss_pred CCCCCc--cCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHhccCCCCHhhhchhee
Q 011751 418 DDIIGF--DFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSKALIV 476 (478)
Q Consensus 418 ~~~~~~--~~~~~p~~~~l~~al~~L~~~g~l~~~~~~t~~lG~~~~~~~~~p~~~~~l~~ 476 (478)
..+..| .-+.||+..++..+-..|..++++|.++.+|. +|+.++++|+.|+++|+++.
T Consensus 805 ~SI~~fl~kal~~~p~dav~e~e~~l~~m~~ld~n~elt~-lg~~la~l~iep~~~k~~~l 864 (1282)
T KOG0921|consen 805 GSIGEFLGKALQPPPYDAVIEAEAVLREMGALDANDELTP-LGRMLARLPIEPRIGKMMIL 864 (1282)
T ss_pred hhHHHHHhhccCCCchhhccCchHHHHHhhhhhccCcccc-hhhhhhhccCcccccceeee
Confidence 666554 45799999999999999999999999999996 99999999999999999986
No 26
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=4.2e-40 Score=340.97 Aligned_cols=313 Identities=19% Similarity=0.221 Sum_probs=229.8
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCcc-CCCcEEEEecchHHHHHHHHHHHHHH
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC-RDGKLIGVTQPRRVAAVTVAKRVAEE 82 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~-~~~~~i~~~~p~~~l~~~~~~~~~~~ 82 (478)
++.++..+...++++|.++++.+.+|++++++||||||||.++.+.++..... ..+..++|++|+++|+.|+++.+...
T Consensus 18 l~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~ 97 (629)
T PRK11634 18 LEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDF 97 (629)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 44555566778999999999999999999999999999997766666544322 23457999999999999999887766
Q ss_pred hCCcCCCEEEEEEeec--------------ccCChhhhHHHHhhC--cCcCCCcceEeecccccchhhhHHHHHHHHHHH
Q 011751 83 SGVELGQRVGYSIRFD--------------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQN 146 (478)
Q Consensus 83 ~~~~~~~~vg~~~~~~--------------~~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~ 146 (478)
.+...+..+....... ..+.+..++...+.. ..++++++||+||||
T Consensus 98 ~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd------------------ 159 (629)
T PRK11634 98 SKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD------------------ 159 (629)
T ss_pred HhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHH------------------
Confidence 5433333333221111 112334444444333 347899999999998
Q ss_pred hhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCC--hhHHH-hhhCCCCeEEeCCccc
Q 011751 147 ARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLD--ARGFS-EYFGCAKAVHVQGRQF 223 (478)
Q Consensus 147 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~--~~~~~-~~~~~~~~~~~~~~~~ 223 (478)
.|+++++...+..++..++ ...|+++||||++ ...+. .|+.++..+.+.....
T Consensus 160 --------------------~ml~~gf~~di~~Il~~lp----~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~ 215 (629)
T PRK11634 160 --------------------EMLRMGFIEDVETIMAQIP----EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVT 215 (629)
T ss_pred --------------------HHhhcccHHHHHHHHHhCC----CCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccc
Confidence 3555555555555555555 5679999999993 33444 5665555554443321
Q ss_pred ---cceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHH
Q 011751 224 ---PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSE 300 (478)
Q Consensus 224 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~ 300 (478)
.+...|......+ ....+..+.......++||||+|+..++.++..|.+. ++.+..+||+|++.
T Consensus 216 ~~~~i~q~~~~v~~~~----k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~---------g~~~~~lhgd~~q~ 282 (629)
T PRK11634 216 TRPDISQSYWTVWGMR----KNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERN---------GYNSAALNGDMNQA 282 (629)
T ss_pred cCCceEEEEEEechhh----HHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhC---------CCCEEEeeCCCCHH
Confidence 2233333222222 2223344444455678999999999999999999876 78899999999999
Q ss_pred HHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCe
Q 011751 301 QQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGK 379 (478)
Q Consensus 301 ~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~ 379 (478)
+|..+++.|++|+.+|||||+++++|||+|+|++||+ || .|.+.++|+||+|||||.| .|.
T Consensus 283 ~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~--------~d----------~P~~~e~yvqRiGRtGRaGr~G~ 344 (629)
T PRK11634 283 LREQTLERLKDGRLDILIATDVAARGLDVERISLVVN--------YD----------IPMDSESYVHRIGRTGRAGRAGR 344 (629)
T ss_pred HHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEE--------eC----------CCCCHHHHHHHhccccCCCCcce
Confidence 9999999999999999999999999999999999999 77 5889999999999999999 799
Q ss_pred EEEecCHhhH
Q 011751 380 CFRLYPENEF 389 (478)
Q Consensus 380 ~~~l~~~~~~ 389 (478)
++.+++..+.
T Consensus 345 ai~~v~~~e~ 354 (629)
T PRK11634 345 ALLFVENRER 354 (629)
T ss_pred EEEEechHHH
Confidence 9999976543
No 27
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=2e-40 Score=346.14 Aligned_cols=407 Identities=22% Similarity=0.293 Sum_probs=269.7
Q ss_pred CcHHHHHHHHHHH-hcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHH--HHhCCcCCCE
Q 011751 14 PIASVEKRLVEEV-RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVA--EESGVELGQR 90 (478)
Q Consensus 14 ~~~~~q~~~~~~l-~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~--~~~~~~~~~~ 90 (478)
.+++.|++++... .+++|++|++|||||||.++.+++....... +.++++++|+++|+.+..+.+. +.+|..++..
T Consensus 31 el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~ 109 (766)
T COG1204 31 ELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-GGKVVYIVPLKALAEEKYEEFSRLEELGIRVGIS 109 (766)
T ss_pred HhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-CCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEe
Confidence 4566677666664 4569999999999999988877777665433 4679999999999999999987 4444443333
Q ss_pred EEEEE-------eecccCChhhhHHHHhhC--cCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccCCCCCCCC
Q 011751 91 VGYSI-------RFDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNN 161 (478)
Q Consensus 91 vg~~~-------~~~~~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 161 (478)
.|-.. ..+..+++.++...+..+ .++..+++|||||+|
T Consensus 110 TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH--------------------------------- 156 (766)
T COG1204 110 TGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIH--------------------------------- 156 (766)
T ss_pred cCCcccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeee---------------------------------
Confidence 22110 111223445555544432 367799999999999
Q ss_pred CCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC-ChhHHHhhhCCCCeEEeCCccccceE----------Eec
Q 011751 162 NENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQFPVEI----------LYT 230 (478)
Q Consensus 162 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 230 (478)
++.|..||..++.++.+..... ..+|++++|||+ |.+++++|++.... ....+|+.. ...
T Consensus 157 -----~l~d~~RG~~lE~iv~r~~~~~-~~~rivgLSATlpN~~evA~wL~a~~~---~~~~rp~~l~~~v~~~~~~~~~ 227 (766)
T COG1204 157 -----LLGDRTRGPVLESIVARMRRLN-ELIRIVGLSATLPNAEEVADWLNAKLV---ESDWRPVPLRRGVPYVGAFLGA 227 (766)
T ss_pred -----ecCCcccCceehhHHHHHHhhC-cceEEEEEeeecCCHHHHHHHhCCccc---ccCCCCcccccCCccceEEEEe
Confidence 4555556666666666665443 458999999999 99999999987644 122222221 111
Q ss_pred CCCCc----chHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcC----------------CC-------
Q 011751 231 LYPEP----DYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQL----------------PE------- 283 (478)
Q Consensus 231 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~----------------~~------- 283 (478)
..... ...+.....+.... ..++++||||+|++.+...++.+++.+... ..
T Consensus 228 ~~~~k~~~~~~~~~~~~~v~~~~--~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 305 (766)
T COG1204 228 DGKKKTWPLLIDNLALELVLESL--AEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSE 305 (766)
T ss_pred cCccccccccchHHHHHHHHHHH--hcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccc
Confidence 11111 11222333333333 458999999999999999999999643311 00
Q ss_pred -----CCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceee
Q 011751 284 -----ASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVV 358 (478)
Q Consensus 284 -----~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~ 358 (478)
+.....+..||+||+.++|..+++.|+.|+++||+||+++++|||+|+-++||. ....||+..|+ .
T Consensus 306 ~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk----~~~~y~~~~g~-----~ 376 (766)
T COG1204 306 DEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIK----DTRRYDPKGGI-----V 376 (766)
T ss_pred hHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEe----eeEEEcCCCCe-----E
Confidence 111235778999999999999999999999999999999999999999999996 67788884442 4
Q ss_pred ecCHHHHHHhhcccCCCC---CCeEEEecC-Hh---hHhcccCCCCCccccc------CchHHHHHHHHcCCC-CCCCc-
Q 011751 359 PISKAQALQRSGRAGREG---PGKCFRLYP-EN---EFDKLEDSTKPEIKRC------NLSNVILQLKALGVD-DIIGF- 423 (478)
Q Consensus 359 ~~s~~~~~Qr~GRaGR~~---~G~~~~l~~-~~---~~~~~~~~~~pei~~~------~l~~~~l~~~~~~~~-~~~~~- 423 (478)
+++..++.||+|||||+| -|..+.+.+ .. .+........|+...+ ++...++.+.+.+.. +....
T Consensus 377 ~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~~~~~e~~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~ 456 (766)
T COG1204 377 DIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQSEPEPIESKLGDELNLRTFLLGVISVGDAVSWLELT 456 (766)
T ss_pred ECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHHHhhccCcchHHHhhcccccchheEEEEEeccchhhHHHHH
Confidence 799999999999999999 566666662 21 2222333444443111 111111111111110 00000
Q ss_pred -----cCCC------CCCHHHHHHHHHHHHHCC-CCCCCC---CCCHHHHHHhccCCCCHhhhchhe
Q 011751 424 -----DFME------KPSRASIIKSLEQLFLLG-ALTDDC---KLSDPVGHQMARLPLDPIYSKALI 475 (478)
Q Consensus 424 -----~~~~------~p~~~~l~~al~~L~~~g-~l~~~~---~~t~~lG~~~~~~~~~p~~~~~l~ 475 (478)
-|.. --....+..++..|.+.+ +++... ..|+ +|+.+++++++|..++.+.
T Consensus 457 ~f~~~t~~~~~~~~~~~~~~~i~~~~~~L~~~~~~~~~~~~~~~ate-~g~~~s~~yi~~~sa~~~~ 522 (766)
T COG1204 457 DFYERTFYNPQTYGEGMLREEILASLRYLEENGLILDADWEALHATE-LGKLVSRLYIDPESAKIFR 522 (766)
T ss_pred HHHHHHHhhhhhccccchHHHHHHHHHHHHhccceeeccccccchhH-HHHHhhhccCCHHHHHHHH
Confidence 0001 124566788999999986 554433 6787 9999999999999998764
No 28
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.5e-40 Score=339.78 Aligned_cols=314 Identities=18% Similarity=0.227 Sum_probs=223.4
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCcc--------CCCcEEEEecchHHHHHHH
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC--------RDGKLIGVTQPRRVAAVTV 75 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~--------~~~~~i~~~~p~~~l~~~~ 75 (478)
++.++..+...++++|.++++.+.+|++++++||||||||..+.+++++.... ..+..++|+.|+++|+.|+
T Consensus 21 ~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi 100 (572)
T PRK04537 21 LAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQI 100 (572)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHH
Confidence 34455556667899999999999999999999999999996665555443211 1135799999999999999
Q ss_pred HHHHHHHhCCcCCCEEEEEEeec--------------ccCChhhhHHHHhhC---cCcCCCcceEeecccccchhhhHHH
Q 011751 76 AKRVAEESGVELGQRVGYSIRFD--------------DRTSTSTRIKEALLD---PYLSRYSAIIVDEAHERTVHTDVLL 138 (478)
Q Consensus 76 ~~~~~~~~~~~~~~~vg~~~~~~--------------~~~~~~~~~~~~l~~---~~l~~~~~lIiDE~H~r~~~~~~~l 138 (478)
.+.+.+... ..+..++...... ..+.+..++..++.. ..+.++++|||||||.
T Consensus 101 ~~~~~~l~~-~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~--------- 170 (572)
T PRK04537 101 HKDAVKFGA-DLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADR--------- 170 (572)
T ss_pred HHHHHHHhc-cCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHH---------
Confidence 988755433 3444444333211 122333444444432 2467889999999983
Q ss_pred HHHHHHHHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChh--HH-HhhhCCCCe
Q 011751 139 GLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--GF-SEYFGCAKA 215 (478)
Q Consensus 139 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~--~~-~~~~~~~~~ 215 (478)
|++.++...+..++..++.. .+.|+++||||++.. .+ ..++.....
T Consensus 171 -----------------------------lld~gf~~~i~~il~~lp~~--~~~q~ll~SATl~~~v~~l~~~~l~~p~~ 219 (572)
T PRK04537 171 -----------------------------MFDLGFIKDIRFLLRRMPER--GTRQTLLFSATLSHRVLELAYEHMNEPEK 219 (572)
T ss_pred -----------------------------HhhcchHHHHHHHHHhcccc--cCceEEEEeCCccHHHHHHHHHHhcCCcE
Confidence 33444433333344444321 356899999999443 33 355555444
Q ss_pred EEeCCccc---cceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEE
Q 011751 216 VHVQGRQF---PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVP 292 (478)
Q Consensus 216 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~ 292 (478)
+.+..... .+...+..... ......+..+.......++||||+|+..++.+++.|.+. ++.+..
T Consensus 220 i~v~~~~~~~~~i~q~~~~~~~----~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~---------g~~v~~ 286 (572)
T PRK04537 220 LVVETETITAARVRQRIYFPAD----EEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERH---------GYRVGV 286 (572)
T ss_pred EEeccccccccceeEEEEecCH----HHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHc---------CCCEEE
Confidence 44333221 12222222111 122333444444556789999999999999999999876 788999
Q ss_pred ccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhccc
Q 011751 293 IFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRA 372 (478)
Q Consensus 293 ~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRa 372 (478)
+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++||+ || .|.+..+|+||+|||
T Consensus 287 lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VIn--------yd----------~P~s~~~yvqRiGRa 348 (572)
T PRK04537 287 LSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYN--------YD----------LPFDAEDYVHRIGRT 348 (572)
T ss_pred EeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEE--------cC----------CCCCHHHHhhhhccc
Confidence 999999999999999999999999999999999999999999999 77 588999999999999
Q ss_pred CCCC-CCeEEEecCHhhH
Q 011751 373 GREG-PGKCFRLYPENEF 389 (478)
Q Consensus 373 GR~~-~G~~~~l~~~~~~ 389 (478)
||.| .|.++.|+.+.+.
T Consensus 349 GR~G~~G~ai~~~~~~~~ 366 (572)
T PRK04537 349 ARLGEEGDAISFACERYA 366 (572)
T ss_pred ccCCCCceEEEEecHHHH
Confidence 9999 8999999987643
No 29
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1e-39 Score=329.87 Aligned_cols=316 Identities=17% Similarity=0.204 Sum_probs=224.8
Q ss_pred chhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCc-----cCCCcEEEEecchHHHHHHHHH
Q 011751 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF-----CRDGKLIGVTQPRRVAAVTVAK 77 (478)
Q Consensus 3 ~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~-----~~~~~~i~~~~p~~~l~~~~~~ 77 (478)
+++.++..+...++++|.++++.+.+|++++++||||||||..+.+.++.... ..+..+++++.|+++++.|+.+
T Consensus 12 l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~ 91 (434)
T PRK11192 12 LLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVAD 91 (434)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHH
Confidence 34556666777899999999999999999999999999999665544443221 1124579999999999999988
Q ss_pred HHHHHhCCcCCCEEEEEEeec--------------ccCChhhhHHHHhhC--cCcCCCcceEeecccccchhhhHHHHHH
Q 011751 78 RVAEESGVELGQRVGYSIRFD--------------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLL 141 (478)
Q Consensus 78 ~~~~~~~~~~~~~vg~~~~~~--------------~~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~r~~~~~~~l~~l 141 (478)
.+..... ..+..++...+.. ..+.+..++..++.. ..+.++++||+||||
T Consensus 92 ~~~~l~~-~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah------------- 157 (434)
T PRK11192 92 QARELAK-HTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEAD------------- 157 (434)
T ss_pred HHHHHHc-cCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHH-------------
Confidence 7655433 2233443322211 112233344444332 236789999999998
Q ss_pred HHHHHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCCh---hHHHhhhCCCCe-EE
Q 011751 142 KKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA---RGFSEYFGCAKA-VH 217 (478)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~---~~~~~~~~~~~~-~~ 217 (478)
.|++.++...+..+...+. ...|+++||||++. ..+.+++...+. +.
T Consensus 158 -------------------------~~l~~~~~~~~~~i~~~~~----~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~ 208 (434)
T PRK11192 158 -------------------------RMLDMGFAQDIETIAAETR----WRKQTLLFSATLEGDAVQDFAERLLNDPVEVE 208 (434)
T ss_pred -------------------------HHhCCCcHHHHHHHHHhCc----cccEEEEEEeecCHHHHHHHHHHHccCCEEEE
Confidence 3444444444333333332 45689999999953 455655544433 22
Q ss_pred eCCcc---ccceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcc
Q 011751 218 VQGRQ---FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIF 294 (478)
Q Consensus 218 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h 294 (478)
..... ..+...+..... .......+..+......+++||||+++++++.++..|.+. ++.+..+|
T Consensus 209 ~~~~~~~~~~i~~~~~~~~~---~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~---------~~~~~~l~ 276 (434)
T PRK11192 209 AEPSRRERKKIHQWYYRADD---LEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKA---------GINCCYLE 276 (434)
T ss_pred ecCCcccccCceEEEEEeCC---HHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhC---------CCCEEEec
Confidence 22111 112222222221 2233344445554445789999999999999999999875 78899999
Q ss_pred CCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCC
Q 011751 295 SSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGR 374 (478)
Q Consensus 295 ~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR 374 (478)
|+|++.+|..+++.|++|..+|||||+++++|+|+|++++||+ || .|.|...|+||+|||||
T Consensus 277 g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~--------~d----------~p~s~~~yiqr~GR~gR 338 (434)
T PRK11192 277 GEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVIN--------FD----------MPRSADTYLHRIGRTGR 338 (434)
T ss_pred CCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEE--------EC----------CCCCHHHHhhccccccc
Confidence 9999999999999999999999999999999999999999999 77 58899999999999999
Q ss_pred CC-CCeEEEecCHhhHhc
Q 011751 375 EG-PGKCFRLYPENEFDK 391 (478)
Q Consensus 375 ~~-~G~~~~l~~~~~~~~ 391 (478)
.| .|.++.+++..++..
T Consensus 339 ~g~~g~ai~l~~~~d~~~ 356 (434)
T PRK11192 339 AGRKGTAISLVEAHDHLL 356 (434)
T ss_pred CCCCceEEEEecHHHHHH
Confidence 98 899999998776644
No 30
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=9.8e-40 Score=344.71 Aligned_cols=316 Identities=18% Similarity=0.155 Sum_probs=217.9
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHh
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (478)
.+.++..+.-.++++|.++++.+.+|+++++++|||||||..+.+.+++......+..++++.|+++|+.|+.+.+.+..
T Consensus 26 ~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~ 105 (742)
T TIGR03817 26 VAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELT 105 (742)
T ss_pred HHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhc
Confidence 45555566667999999999999999999999999999996666666555444446689999999999999999887654
Q ss_pred CCcCCCEEEEEEeecccCCh----------------hhhHHH-Hhh-----CcCcCCCcceEeecccccc----hhhhHH
Q 011751 84 GVELGQRVGYSIRFDDRTST----------------STRIKE-ALL-----DPYLSRYSAIIVDEAHERT----VHTDVL 137 (478)
Q Consensus 84 ~~~~~~~vg~~~~~~~~~~~----------------~~~~~~-~l~-----~~~l~~~~~lIiDE~H~r~----~~~~~~ 137 (478)
..+..++. .++..+. ...+.. ++. ..+++++++|||||+|... .+...+
T Consensus 106 --~~~i~v~~---~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~~~i 180 (742)
T TIGR03817 106 --LRGVRPAT---YDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVALV 180 (742)
T ss_pred --cCCeEEEE---EeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHHHHHHH
Confidence 12223322 1222221 112211 111 1237899999999999521 111222
Q ss_pred HHHHHHHHHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC-ChhHHHhhhCCCCeE
Q 011751 138 LGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAV 216 (478)
Q Consensus 138 l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~-~~~~~~~~~~~~~~~ 216 (478)
+..++++... ...++|++++|||+ |+..+++++.+.+..
T Consensus 181 l~rL~ri~~~----------------------------------------~g~~~q~i~~SATi~n~~~~~~~l~g~~~~ 220 (742)
T TIGR03817 181 LRRLRRLCAR----------------------------------------YGASPVFVLASATTADPAAAASRLIGAPVV 220 (742)
T ss_pred HHHHHHHHHh----------------------------------------cCCCCEEEEEecCCCCHHHHHHHHcCCCeE
Confidence 2222222211 11567999999999 777777665555555
Q ss_pred EeCCcccc---ceEEecCCC-----C-------cchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcC
Q 011751 217 HVQGRQFP---VEILYTLYP-----E-------PDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQL 281 (478)
Q Consensus 217 ~~~~~~~~---~~~~~~~~~-----~-------~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~ 281 (478)
.+.....+ ....+...+ . ..........+..+.. .+.++||||+|++.++.++..+++.+...
T Consensus 221 ~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~--~~~~~IVF~~sr~~ae~l~~~l~~~l~~~ 298 (742)
T TIGR03817 221 AVTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVA--EGARTLTFVRSRRGAELVAAIARRLLGEV 298 (742)
T ss_pred EECCCCCCcCceEEEEecCCccccccccccccccchHHHHHHHHHHHHH--CCCCEEEEcCCHHHHHHHHHHHHHHHHhh
Confidence 45433222 111111111 0 0011122223333332 36799999999999999999998765432
Q ss_pred CCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecC
Q 011751 282 PEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPIS 361 (478)
Q Consensus 282 ~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s 361 (478)
.. ..+..+..+||++++++|+++++.|++|++++|||||++++|||+|++++||+ || .|.+
T Consensus 299 ~~-~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~--------~~----------~P~s 359 (742)
T TIGR03817 299 DP-DLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVI--------AG----------FPGT 359 (742)
T ss_pred cc-ccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEE--------eC----------CCCC
Confidence 11 11356889999999999999999999999999999999999999999999999 55 5899
Q ss_pred HHHHHHhhcccCCCC-CCeEEEecC
Q 011751 362 KAQALQRSGRAGREG-PGKCFRLYP 385 (478)
Q Consensus 362 ~~~~~Qr~GRaGR~~-~G~~~~l~~ 385 (478)
.++|+||+|||||.| .|.++.+.+
T Consensus 360 ~~~y~qRiGRaGR~G~~g~ai~v~~ 384 (742)
T TIGR03817 360 RASLWQQAGRAGRRGQGALVVLVAR 384 (742)
T ss_pred HHHHHHhccccCCCCCCcEEEEEeC
Confidence 999999999999999 899998885
No 31
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=5.5e-40 Score=311.52 Aligned_cols=315 Identities=20% Similarity=0.334 Sum_probs=235.9
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--hHHHHHHhhcCc--------cCCCcEEEEecchHHHHH
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGF--------CRDGKLIGVTQPRRVAAV 73 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT--~~~~~~~~~~~~--------~~~~~~i~~~~p~~~l~~ 73 (478)
+++.+.-+...++|+|.++++...++++++.+|.|||||| +++|+++..... ...++..+++.|+|.+++
T Consensus 257 l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaq 336 (673)
T KOG0333|consen 257 LSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQ 336 (673)
T ss_pred HHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHH
Confidence 3444445555689999999999999999999999999999 555665543222 123778999999999999
Q ss_pred HHHHHHHHHhCCcCCC----EEEEEE----------eecccCChhhhHHHHhhC--cCcCCCcceEeecccccchhhhHH
Q 011751 74 TVAKRVAEESGVELGQ----RVGYSI----------RFDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVL 137 (478)
Q Consensus 74 ~~~~~~~~~~~~~~~~----~vg~~~----------~~~~~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~r~~~~~~~ 137 (478)
|+.+.-.++ +..++. .||..- ..+....++.++...+.+ ..++++.+||+|||
T Consensus 337 qIeeEt~kf-~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldea---------- 405 (673)
T KOG0333|consen 337 QIEEETNKF-GKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEA---------- 405 (673)
T ss_pred HHHHHHHHh-cccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccch----------
Confidence 998875433 333332 222211 111222333444433332 23788999999999
Q ss_pred HHHHHHHHHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCC---------------------ceEEE
Q 011751 138 LGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAP---------------------LKLII 196 (478)
Q Consensus 138 l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~i~ 196 (478)
|.|+|++|..++..+|.+++...... .|.++
T Consensus 406 ----------------------------drmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~m 457 (673)
T KOG0333|consen 406 ----------------------------DRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVM 457 (673)
T ss_pred ----------------------------hhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEE
Confidence 58999999999999998888543221 67899
Q ss_pred EcCCC--ChhHHH-hhhCCCCeEEeCCc--ccc-ceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHH
Q 011751 197 MSASL--DARGFS-EYFGCAKAVHVQGR--QFP-VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESV 270 (478)
Q Consensus 197 lSAT~--~~~~~~-~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l 270 (478)
+|||+ .++.++ .||..+.++.+..- ..| ++.......+.+... .+..+.......++|||+|+++.|+.+
T Consensus 458 ftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~k----kL~eil~~~~~ppiIIFvN~kk~~d~l 533 (673)
T KOG0333|consen 458 FTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRK----KLIEILESNFDPPIIIFVNTKKGADAL 533 (673)
T ss_pred EecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHH----HHHHHHHhCCCCCEEEEEechhhHHHH
Confidence 99999 456666 67766655555432 222 333333333333322 333333333577899999999999999
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCC
Q 011751 271 ERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVK 350 (478)
Q Consensus 271 ~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~ 350 (478)
++.|.+. ++.+..+||+-++++|+.+++.|++|...|+||||++++|||||||.+||| ||
T Consensus 534 Ak~LeK~---------g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVin--------yd--- 593 (673)
T KOG0333|consen 534 AKILEKA---------GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVIN--------YD--- 593 (673)
T ss_pred HHHHhhc---------cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeee--------cc---
Confidence 9999987 999999999999999999999999999999999999999999999999999 88
Q ss_pred CcccceeeecCHHHHHHhhcccCCCC-CCeEEEecCHhh
Q 011751 351 GMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENE 388 (478)
Q Consensus 351 ~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 388 (478)
++.|..+|.||+||+||+| .|.++.|+++.+
T Consensus 594 -------maksieDYtHRIGRTgRAGk~GtaiSflt~~d 625 (673)
T KOG0333|consen 594 -------MAKSIEDYTHRIGRTGRAGKSGTAISFLTPAD 625 (673)
T ss_pred -------hhhhHHHHHHHhccccccccCceeEEEeccch
Confidence 7899999999999999999 999999998876
No 32
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.2e-39 Score=330.20 Aligned_cols=313 Identities=18% Similarity=0.248 Sum_probs=214.8
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccC--------CCcEEEEecchHHHHHHH
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR--------DGKLIGVTQPRRVAAVTV 75 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~--------~~~~i~~~~p~~~l~~~~ 75 (478)
++.+...+.-.++++|.++++.+.+|+++++++|||||||..+.+.++...... +..+++|+.|+++|+.|+
T Consensus 99 ~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~ 178 (475)
T PRK01297 99 MHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQI 178 (475)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHH
Confidence 344555555668999999999999999999999999999966555554332221 145799999999999999
Q ss_pred HHHHHHHhCCcCCCEEEEEEee---------------cccCChhhhHHHHhh--CcCcCCCcceEeecccccchhhhHHH
Q 011751 76 AKRVAEESGVELGQRVGYSIRF---------------DDRTSTSTRIKEALL--DPYLSRYSAIIVDEAHERTVHTDVLL 138 (478)
Q Consensus 76 ~~~~~~~~~~~~~~~vg~~~~~---------------~~~~~~~~~~~~~l~--~~~l~~~~~lIiDE~H~r~~~~~~~l 138 (478)
.+.+...... .+..+...... +..+.+..++..+.. ..++.++++|||||+|..
T Consensus 179 ~~~~~~l~~~-~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l-------- 249 (475)
T PRK01297 179 AKDAAALTKY-TGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRM-------- 249 (475)
T ss_pred HHHHHHhhcc-CCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHH--------
Confidence 9887655432 23333221111 011223333333332 245889999999999942
Q ss_pred HHHHHHHHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC--ChhHHH-hhhCCCCe
Q 011751 139 GLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFS-EYFGCAKA 215 (478)
Q Consensus 139 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~--~~~~~~-~~~~~~~~ 215 (478)
++.++...+..++..++.. .+.|++++|||+ +...+. .|+.+...
T Consensus 250 ------------------------------~~~~~~~~l~~i~~~~~~~--~~~q~i~~SAT~~~~~~~~~~~~~~~~~~ 297 (475)
T PRK01297 250 ------------------------------LDMGFIPQVRQIIRQTPRK--EERQTLLFSATFTDDVMNLAKQWTTDPAI 297 (475)
T ss_pred ------------------------------HhcccHHHHHHHHHhCCCC--CCceEEEEEeecCHHHHHHHHHhccCCEE
Confidence 1111111111122222111 346899999998 444554 44444433
Q ss_pred EEeCCccc---cceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEE
Q 011751 216 VHVQGRQF---PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVP 292 (478)
Q Consensus 216 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~ 292 (478)
+.+..... .+..++......+. ...+..+.......++||||++++.++.+++.|.+. ++.+..
T Consensus 298 v~~~~~~~~~~~~~~~~~~~~~~~k----~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~---------~~~~~~ 364 (475)
T PRK01297 298 VEIEPENVASDTVEQHVYAVAGSDK----YKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKD---------GINAAQ 364 (475)
T ss_pred EEeccCcCCCCcccEEEEEecchhH----HHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHc---------CCCEEE
Confidence 33332211 12222222222221 223333334445678999999999999999999775 778899
Q ss_pred ccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhccc
Q 011751 293 IFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRA 372 (478)
Q Consensus 293 ~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRa 372 (478)
+||++++++|.++++.|++|+++|||||+++++|||+|++++||+ || .|.|..+|+||+|||
T Consensus 365 ~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~--------~~----------~P~s~~~y~Qr~GRa 426 (475)
T PRK01297 365 LSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVIN--------FT----------LPEDPDDYVHRIGRT 426 (475)
T ss_pred EECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEE--------eC----------CCCCHHHHHHhhCcc
Confidence 999999999999999999999999999999999999999999999 65 589999999999999
Q ss_pred CCCC-CCeEEEecCHhh
Q 011751 373 GREG-PGKCFRLYPENE 388 (478)
Q Consensus 373 GR~~-~G~~~~l~~~~~ 388 (478)
||.| .|.++.++++++
T Consensus 427 GR~g~~g~~i~~~~~~d 443 (475)
T PRK01297 427 GRAGASGVSISFAGEDD 443 (475)
T ss_pred CCCCCCceEEEEecHHH
Confidence 9999 899999998764
No 33
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.9e-39 Score=325.43 Aligned_cols=309 Identities=16% Similarity=0.241 Sum_probs=214.2
Q ss_pred hhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCc-cCCCcEEEEecchHHHHHHHHHHHHHHhCCcCC
Q 011751 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF-CRDGKLIGVTQPRRVAAVTVAKRVAEESGVELG 88 (478)
Q Consensus 10 ~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~-~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~ 88 (478)
.+.-.++++|.++++.+.+|++++++||||||||.++.+.+..... ...+..++++.|+++++.|+.+.+..... ...
T Consensus 46 ~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~-~~~ 124 (401)
T PTZ00424 46 YGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGD-YLK 124 (401)
T ss_pred cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhh-hcC
Confidence 3344689999999999999999999999999999776666554432 22356799999999999998877655432 222
Q ss_pred CEEEEEEee--------------cccCChhhhHHHHhhC--cCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccc
Q 011751 89 QRVGYSIRF--------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSA 152 (478)
Q Consensus 89 ~~vg~~~~~--------------~~~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~ 152 (478)
..++..... +..+.+..++...+.. ..+.+++++|+||+|..
T Consensus 125 ~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~---------------------- 182 (401)
T PTZ00424 125 VRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEM---------------------- 182 (401)
T ss_pred ceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHH----------------------
Confidence 222211111 1112223333333322 35789999999999942
Q ss_pred cCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChh--HHH-hhhCCCCeEEeCCcc---ccce
Q 011751 153 DGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--GFS-EYFGCAKAVHVQGRQ---FPVE 226 (478)
Q Consensus 153 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~--~~~-~~~~~~~~~~~~~~~---~~~~ 226 (478)
++.++...+..++..+. ++.|++++|||++.+ .+. .++..+..+.+.... ..+.
T Consensus 183 ----------------~~~~~~~~~~~i~~~~~----~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (401)
T PTZ00424 183 ----------------LSRGFKGQIYDVFKKLP----PDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIR 242 (401)
T ss_pred ----------------HhcchHHHHHHHHhhCC----CCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCce
Confidence 11111111111222222 678999999999433 333 444444333333222 1222
Q ss_pred EEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhc
Q 011751 227 ILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVF 306 (478)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~ 306 (478)
..+......++. ...+..........++||||+++++++.++..|.+. ++.+..+||++++++|..++
T Consensus 243 ~~~~~~~~~~~~---~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~---------~~~~~~~h~~~~~~~R~~i~ 310 (401)
T PTZ00424 243 QFYVAVEKEEWK---FDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHER---------DFTVSCMHGDMDQKDRDLIM 310 (401)
T ss_pred EEEEecChHHHH---HHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHC---------CCcEEEEeCCCCHHHHHHHH
Confidence 333332222222 233334444445678999999999999999999875 77899999999999999999
Q ss_pred CcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEEecC
Q 011751 307 APAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYP 385 (478)
Q Consensus 307 ~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~ 385 (478)
+.|++|+.+|||||+++++|+|+|++++||+ || .|.|..+|+||+|||||.| .|.|+.+++
T Consensus 311 ~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~--------~~----------~p~s~~~y~qr~GRagR~g~~G~~i~l~~ 372 (401)
T PTZ00424 311 REFRSGSTRVLITTDLLARGIDVQQVSLVIN--------YD----------LPASPENYIHRIGRSGRFGRKGVAINFVT 372 (401)
T ss_pred HHHHcCCCCEEEEcccccCCcCcccCCEEEE--------EC----------CCCCHHHEeecccccccCCCCceEEEEEc
Confidence 9999999999999999999999999999999 66 5889999999999999999 999999998
Q ss_pred HhhHhc
Q 011751 386 ENEFDK 391 (478)
Q Consensus 386 ~~~~~~ 391 (478)
+++.+.
T Consensus 373 ~~~~~~ 378 (401)
T PTZ00424 373 PDDIEQ 378 (401)
T ss_pred HHHHHH
Confidence 886654
No 34
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-39 Score=283.68 Aligned_cols=308 Identities=15% Similarity=0.271 Sum_probs=231.7
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCc-cCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCE
Q 011751 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF-CRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQR 90 (478)
Q Consensus 12 ~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~-~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~ 90 (478)
+-.+..+|+.++..+..|++++.++.+|+|||..+..-++...- ......++++.|+|+++.|+.+-+... +...+..
T Consensus 47 fekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~al-g~~mnvq 125 (400)
T KOG0328|consen 47 FEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILAL-GDYMNVQ 125 (400)
T ss_pred cCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHh-cccccce
Confidence 33678899999999999999999999999999444333333221 222357999999999999998876433 2222222
Q ss_pred EEEEEeec--------------ccCChhhhHHHHhhCc--CcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccC
Q 011751 91 VGYSIRFD--------------DRTSTSTRIKEALLDP--YLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADG 154 (478)
Q Consensus 91 vg~~~~~~--------------~~~~~~~~~~~~l~~~--~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~ 154 (478)
+-..+++. ....++.++..++... ....++++|+||+
T Consensus 126 ~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEa--------------------------- 178 (400)
T KOG0328|consen 126 CHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEA--------------------------- 178 (400)
T ss_pred EEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccH---------------------------
Confidence 21111111 1122333443444332 3567999999999
Q ss_pred CCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChhH--HHh-hhCCCCeEEeCCccccc---eEE
Q 011751 155 HSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARG--FSE-YFGCAKAVHVQGRQFPV---EIL 228 (478)
Q Consensus 155 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~--~~~-~~~~~~~~~~~~~~~~~---~~~ 228 (478)
|.|++.+++.++..++..++ ++.|++++|||++.+. +.+ |..++..+.+.....+. +.+
T Consensus 179 -----------DemL~kgfk~Qiydiyr~lp----~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf 243 (400)
T KOG0328|consen 179 -----------DEMLNKGFKEQIYDIYRYLP----PGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQF 243 (400)
T ss_pred -----------HHHHHhhHHHHHHHHHHhCC----CCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhh
Confidence 57888899999999999998 8899999999996554 334 44444445555444443 455
Q ss_pred ecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCc
Q 011751 229 YTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAP 308 (478)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~ 308 (478)
|......++ ..+++.++.....-.+.+|||||+..++-+.+.+++. .+.|...||+|+++||++++..
T Consensus 244 ~v~ve~Eew---KfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~---------nftVssmHGDm~qkERd~im~d 311 (400)
T KOG0328|consen 244 FVAVEKEEW---KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA---------NFTVSSMHGDMEQKERDKIMND 311 (400)
T ss_pred eeeechhhh---hHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhh---------CceeeeccCCcchhHHHHHHHH
Confidence 555444443 3445555555555678999999999999999999887 8899999999999999999999
Q ss_pred CCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEEecCHh
Q 011751 309 AAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPEN 387 (478)
Q Consensus 309 f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~ 387 (478)
|+.|+.+||++||+-++|+|+|.|+.||| || .|...+.|+||+||.||.| .|.++.++..+
T Consensus 312 FRsg~SrvLitTDVwaRGiDv~qVslviN--------YD----------LP~nre~YIHRIGRSGRFGRkGvainFVk~~ 373 (400)
T KOG0328|consen 312 FRSGKSRVLITTDVWARGIDVQQVSLVIN--------YD----------LPNNRELYIHRIGRSGRFGRKGVAINFVKSD 373 (400)
T ss_pred hhcCCceEEEEechhhccCCcceeEEEEe--------cC----------CCccHHHHhhhhccccccCCcceEEEEecHH
Confidence 99999999999999999999999999999 88 5888899999999999999 99999999888
Q ss_pred hHhcc
Q 011751 388 EFDKL 392 (478)
Q Consensus 388 ~~~~~ 392 (478)
+...+
T Consensus 374 d~~~l 378 (400)
T KOG0328|consen 374 DLRIL 378 (400)
T ss_pred HHHHH
Confidence 76553
No 35
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=7.8e-38 Score=317.68 Aligned_cols=301 Identities=17% Similarity=0.222 Sum_probs=205.2
Q ss_pred hcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCE
Q 011751 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQR 90 (478)
Q Consensus 11 ~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~ 90 (478)
+.-.++++|.++++.+.+|+++++++|||||||.++.+.++.. +..++++.|+++|+.++...+.. .+..
T Consensus 8 g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-----~~~~lVi~P~~~L~~dq~~~l~~-~gi~---- 77 (470)
T TIGR00614 8 GLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-----DGITLVISPLISLMEDQVLQLKA-SGIP---- 77 (470)
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-----CCcEEEEecHHHHHHHHHHHHHH-cCCc----
Confidence 3345789999999999999999999999999995443333322 34678899999999988887753 2322
Q ss_pred EEEEEeeccc------------------CChhhhHH---HHhhCc-CcCCCcceEeecccccchhhhHHHHHHHHHHHhh
Q 011751 91 VGYSIRFDDR------------------TSTSTRIK---EALLDP-YLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (478)
Q Consensus 91 vg~~~~~~~~------------------~~~~~~~~---~~l~~~-~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~ 148 (478)
.......... ..+..++. .+.... ...+++++||||||+...+...+...++.+...+
T Consensus 78 ~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~ 157 (470)
T TIGR00614 78 ATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLK 157 (470)
T ss_pred EEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHH
Confidence 2111110000 00111110 011111 4578999999999976555443333333322211
Q ss_pred cccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChh---HHHhhhCCC-CeEEeCCcccc
Q 011751 149 SKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR---GFSEYFGCA-KAVHVQGRQFP 224 (478)
Q Consensus 149 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~---~~~~~~~~~-~~~~~~~~~~~ 224 (478)
. ..++.+++++|||++.. ++.++++-. +.+.......
T Consensus 158 ~--------------------------------------~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r- 198 (470)
T TIGR00614 158 Q--------------------------------------KFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDR- 198 (470)
T ss_pred H--------------------------------------HcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCC-
Confidence 0 01667899999999553 455666432 2222222111
Q ss_pred ceEEecCCCCc-chHHHHHHHHHHhhh-cCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHH
Q 011751 225 VEILYTLYPEP-DYLDATLITIFQVHL-DEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQ 302 (478)
Q Consensus 225 ~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r 302 (478)
..+.+...... +.... +..... ..++..+||||+|+++++.++..|++. ++.+..+||+|++++|
T Consensus 199 ~nl~~~v~~~~~~~~~~----l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~---------g~~~~~~H~~l~~~eR 265 (470)
T TIGR00614 199 PNLYYEVRRKTPKILED----LLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNL---------GIAAGAYHAGLEISAR 265 (470)
T ss_pred CCcEEEEEeCCccHHHH----HHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhc---------CCCeeEeeCCCCHHHH
Confidence 12222221211 22222 222222 233556799999999999999999876 8889999999999999
Q ss_pred HhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEE
Q 011751 303 MRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCF 381 (478)
Q Consensus 303 ~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~ 381 (478)
..+++.|++|..+|||||+++++|||+|+|++||+ || .|.|.++|+||+|||||.| +|.|+
T Consensus 266 ~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~--------~~----------~P~s~~~y~Qr~GRaGR~G~~~~~~ 327 (470)
T TIGR00614 266 DDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIH--------YS----------LPKSMESYYQESGRAGRDGLPSECH 327 (470)
T ss_pred HHHHHHHHcCCCcEEEEechhhccCCcccceEEEE--------eC----------CCCCHHHHHhhhcCcCCCCCCceEE
Confidence 99999999999999999999999999999999999 66 5889999999999999999 99999
Q ss_pred EecCHhhHhc
Q 011751 382 RLYPENEFDK 391 (478)
Q Consensus 382 ~l~~~~~~~~ 391 (478)
.+|+..+...
T Consensus 328 ~~~~~~d~~~ 337 (470)
T TIGR00614 328 LFYAPADINR 337 (470)
T ss_pred EEechhHHHH
Confidence 9998876654
No 36
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-38 Score=300.20 Aligned_cols=348 Identities=22% Similarity=0.280 Sum_probs=252.4
Q ss_pred HHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--hHHHHHHhhcCc-----cCCCcEEEEecchHHHHHHHHHH
Q 011751 6 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGF-----CRDGKLIGVTQPRRVAAVTVAKR 78 (478)
Q Consensus 6 ~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT--~~~~~~~~~~~~-----~~~~~~i~~~~p~~~l~~~~~~~ 78 (478)
+.+..+.-.++.+|++.++.+++|++++|.++|||||| +++|..-....+ ..+|.-++|++|||+++.|.++-
T Consensus 151 L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~ 230 (708)
T KOG0348|consen 151 LNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYET 230 (708)
T ss_pred HHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHH
Confidence 34445556789999999999999999999999999999 666665543332 23477899999999999999998
Q ss_pred HHHHhCCcCCCEEEEEEeecccCChhhhHH--------------HHhhC---cCcCCCcceEeecccccchhhhHHHHHH
Q 011751 79 VAEESGVELGQRVGYSIRFDDRTSTSTRIK--------------EALLD---PYLSRYSAIIVDEAHERTVHTDVLLGLL 141 (478)
Q Consensus 79 ~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~--------------~~l~~---~~l~~~~~lIiDE~H~r~~~~~~~l~~l 141 (478)
+.+.....-...-|+.++++...+...+++ ..+.+ ..+++++++|+||+
T Consensus 231 ~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEa-------------- 296 (708)
T KOG0348|consen 231 VQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEA-------------- 296 (708)
T ss_pred HHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecch--------------
Confidence 887766533333455566666666666665 22222 34788999999999
Q ss_pred HHHHHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccC---CC------CCCceEEEEcCCC--ChhHHHhhh
Q 011751 142 KKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQG---RK------FAPLKLIIMSASL--DARGFSEYF 210 (478)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~------~~~~~~i~lSAT~--~~~~~~~~~ 210 (478)
|++++.+|+.++.++++.+.. .. .+..+-+++|||+ .+..+++.-
T Consensus 297 ------------------------DrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~s 352 (708)
T KOG0348|consen 297 ------------------------DRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLS 352 (708)
T ss_pred ------------------------hHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhcc
Confidence 699999999999999888732 11 1236778999999 666777542
Q ss_pred -CCCCeEEeCCc----------------------------cccceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEc
Q 011751 211 -GCAKAVHVQGR----------------------------QFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFL 261 (478)
Q Consensus 211 -~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~ 261 (478)
.++..+..+.. +..+..+|...|..-.+-.....+......++..+++||+
T Consensus 353 LkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~ 432 (708)
T KOG0348|consen 353 LKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFF 432 (708)
T ss_pred ccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEE
Confidence 22222221100 0111223344444444445555666666666677999999
Q ss_pred CCHHHHHHHHHHHHHHHhc-------------CCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccc
Q 011751 262 TGQEEIESVERLVQERLLQ-------------LPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVT 328 (478)
Q Consensus 262 ~s~~~~~~l~~~l~~~~~~-------------~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvd 328 (478)
.+.+.++--+..+...... ...-..+..++-+||+|++++|..++..|......|++|||++++|+|
T Consensus 433 S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLD 512 (708)
T KOG0348|consen 433 SCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLD 512 (708)
T ss_pred echhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCC
Confidence 9999999999999876553 111223457899999999999999999999999999999999999999
Q ss_pred cCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEEecCH--hhHhcccCCCCCcccccCc
Q 011751 329 IPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPE--NEFDKLEDSTKPEIKRCNL 405 (478)
Q Consensus 329 ip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~--~~~~~~~~~~~pei~~~~l 405 (478)
+|+|++||+ || +|.+.++|+||+||+.|.| .|.++.+..+ .+|-.......+.+...++
T Consensus 513 lP~V~~vVQ--------Yd----------~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~~~l~q~~~ 574 (708)
T KOG0348|consen 513 LPHVGLVVQ--------YD----------PPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHHIMLLQFDM 574 (708)
T ss_pred CCCcCeEEE--------eC----------CCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhcchhhccch
Confidence 999999999 99 6999999999999999999 8988877744 4454433333334444454
Q ss_pred hHHH
Q 011751 406 SNVI 409 (478)
Q Consensus 406 ~~~~ 409 (478)
..++
T Consensus 575 ~~~l 578 (708)
T KOG0348|consen 575 EILL 578 (708)
T ss_pred hhhh
Confidence 4433
No 37
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.2e-37 Score=294.26 Aligned_cols=313 Identities=20% Similarity=0.295 Sum_probs=237.5
Q ss_pred hHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHh--HHHHHHh--hcCc-cCCCcEEEEecchHHHHHHHHHHH
Q 011751 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTT--QLPQFLF--HAGF-CRDGKLIGVTQPRRVAAVTVAKRV 79 (478)
Q Consensus 5 ~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~--~~~~~~~--~~~~-~~~~~~i~~~~p~~~l~~~~~~~~ 79 (478)
+.....++-.++++|+..++.+.+|+++++.|.||||||. ++|.+-. ...+ .+.+..++++.|||+++.|.+...
T Consensus 95 kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~ea 174 (543)
T KOG0342|consen 95 KAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEA 174 (543)
T ss_pred HHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHH
Confidence 3444556667899999999999999999999999999994 3443322 2222 234667999999999999999988
Q ss_pred HHHhCCcCCCEEEEEEeecccCC--------------hhhhHHHHhhCc---CcCCCcceEeecccccchhhhHHHHHHH
Q 011751 80 AEESGVELGQRVGYSIRFDDRTS--------------TSTRIKEALLDP---YLSRYSAIIVDEAHERTVHTDVLLGLLK 142 (478)
Q Consensus 80 ~~~~~~~~~~~vg~~~~~~~~~~--------------~~~~~~~~l~~~---~l~~~~~lIiDE~H~r~~~~~~~l~~l~ 142 (478)
.+......+..+++.+++..... ++.++..++.+. ...+.+++|+|||
T Consensus 175 k~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEA--------------- 239 (543)
T KOG0342|consen 175 KELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEA--------------- 239 (543)
T ss_pred HHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecc---------------
Confidence 77776665677777766554433 333444444432 3566789999999
Q ss_pred HHHHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC--ChhHHHhhh-CCCC-eEEe
Q 011751 143 KVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSEYF-GCAK-AVHV 218 (478)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~--~~~~~~~~~-~~~~-~~~~ 218 (478)
|+++|++|...+++++..++ ...|..++|||. .+++++... ...+ .+.+
T Consensus 240 -----------------------DrlLd~GF~~di~~Ii~~lp----k~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~ 292 (543)
T KOG0342|consen 240 -----------------------DRLLDIGFEEDVEQIIKILP----KQRQTLLFSATQPSKVKDLARGALKRDPVFVNV 292 (543)
T ss_pred -----------------------hhhhhcccHHHHHHHHHhcc----ccceeeEeeCCCcHHHHHHHHHhhcCCceEeec
Confidence 69999999999999999998 678999999999 455666432 2222 2222
Q ss_pred CCc-----cccceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEc
Q 011751 219 QGR-----QFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPI 293 (478)
Q Consensus 219 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~ 293 (478)
... ...++.-|...+....+......+.. .....+++|||+|...+.-++..|+.. ++.|..+
T Consensus 293 ~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk---~~~~~KiiVF~sT~~~vk~~~~lL~~~---------dlpv~ei 360 (543)
T KOG0342|consen 293 DDGGERETHERLEQGYVVAPSDSRFSLLYTFLKK---NIKRYKIIVFFSTCMSVKFHAELLNYI---------DLPVLEI 360 (543)
T ss_pred CCCCCcchhhcccceEEeccccchHHHHHHHHHH---hcCCceEEEEechhhHHHHHHHHHhhc---------CCchhhh
Confidence 211 12344545555554443332222221 222388999999999999999999865 8899999
Q ss_pred cCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccC
Q 011751 294 FSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAG 373 (478)
Q Consensus 294 h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaG 373 (478)
||+.++..|..++..|++.+.-||||||++++|+|+|+|+.||+ || .|.+..+|+||+||+|
T Consensus 361 Hgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ--------~~----------~P~d~~~YIHRvGRTa 422 (543)
T KOG0342|consen 361 HGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQ--------YD----------PPSDPEQYIHRVGRTA 422 (543)
T ss_pred hcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEE--------eC----------CCCCHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999 77 5899999999999999
Q ss_pred CCC-CCeEEEecCHhhH
Q 011751 374 REG-PGKCFRLYPENEF 389 (478)
Q Consensus 374 R~~-~G~~~~l~~~~~~ 389 (478)
|.| .|..+.+..+++.
T Consensus 423 R~gk~G~alL~l~p~El 439 (543)
T KOG0342|consen 423 REGKEGKALLLLAPWEL 439 (543)
T ss_pred ccCCCceEEEEeChhHH
Confidence 988 9999988876643
No 38
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=4.2e-37 Score=320.29 Aligned_cols=303 Identities=17% Similarity=0.259 Sum_probs=207.8
Q ss_pred hHHHhhhcC-CcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHh
Q 011751 5 KILQQRKSL-PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (478)
Q Consensus 5 ~~~~~~~~~-~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (478)
++++....+ ..+++|+++++.+.+|+++++++|||||||.++...++.. ...++++.|+++++.++.+.+...
T Consensus 15 ~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-----~g~tlVisPl~sL~~dqv~~l~~~- 88 (607)
T PRK11057 15 QVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-----DGLTLVVSPLISLMKDQVDQLLAN- 88 (607)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-----CCCEEEEecHHHHHHHHHHHHHHc-
Confidence 344444444 5789999999999999999999999999995443333322 235788999999999888877542
Q ss_pred CCcCCCEEEEEEeecccCChhh---------------------hHH--HHhhCcCcCCCcceEeecccccchhhhHHHHH
Q 011751 84 GVELGQRVGYSIRFDDRTSTST---------------------RIK--EALLDPYLSRYSAIIVDEAHERTVHTDVLLGL 140 (478)
Q Consensus 84 ~~~~~~~vg~~~~~~~~~~~~~---------------------~~~--~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~ 140 (478)
+. ...... ...+... ++. .++......+++++||||||+...+...+...
T Consensus 89 gi----~~~~~~---s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~ 161 (607)
T PRK11057 89 GV----AAACLN---STQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPE 161 (607)
T ss_pred CC----cEEEEc---CCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHH
Confidence 22 222111 1111110 100 11111123468999999999866554433332
Q ss_pred HHHHHHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChh---HHHhhhCC-CCeE
Q 011751 141 LKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR---GFSEYFGC-AKAV 216 (478)
Q Consensus 141 l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~---~~~~~~~~-~~~~ 216 (478)
++.+...+. ..++.+++++|||++.. ++.+.++- .+.+
T Consensus 162 y~~L~~l~~--------------------------------------~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~ 203 (607)
T PRK11057 162 YAALGQLRQ--------------------------------------RFPTLPFMALTATADDTTRQDIVRLLGLNDPLI 203 (607)
T ss_pred HHHHHHHHH--------------------------------------hCCCCcEEEEecCCChhHHHHHHHHhCCCCeEE
Confidence 222222110 01567899999999543 34455542 2333
Q ss_pred EeCCccccceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCC
Q 011751 217 HVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSS 296 (478)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~ 296 (478)
.......| .+.|......... ..+........++++||||+|+++++.++..|.+. ++.+..+||+
T Consensus 204 ~~~~~~r~-nl~~~v~~~~~~~----~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~---------g~~v~~~Ha~ 269 (607)
T PRK11057 204 QISSFDRP-NIRYTLVEKFKPL----DQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSR---------GISAAAYHAG 269 (607)
T ss_pred EECCCCCC-cceeeeeeccchH----HHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhC---------CCCEEEecCC
Confidence 33222121 2222222222222 22333333445788999999999999999999876 7889999999
Q ss_pred CCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC
Q 011751 297 LPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG 376 (478)
Q Consensus 297 l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~ 376 (478)
|++++|..+++.|++|..+|||||+++++|||+|+|++||+ || .|.|.++|+||+|||||.|
T Consensus 270 l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~--------~d----------~P~s~~~y~Qr~GRaGR~G 331 (607)
T PRK11057 270 LDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH--------FD----------IPRNIESYYQETGRAGRDG 331 (607)
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEE--------eC----------CCCCHHHHHHHhhhccCCC
Confidence 99999999999999999999999999999999999999999 77 5889999999999999999
Q ss_pred -CCeEEEecCHhhHh
Q 011751 377 -PGKCFRLYPENEFD 390 (478)
Q Consensus 377 -~G~~~~l~~~~~~~ 390 (478)
+|.|+.+|+..++.
T Consensus 332 ~~~~~ill~~~~d~~ 346 (607)
T PRK11057 332 LPAEAMLFYDPADMA 346 (607)
T ss_pred CCceEEEEeCHHHHH
Confidence 89999999877643
No 39
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=4.7e-37 Score=322.67 Aligned_cols=300 Identities=15% Similarity=0.156 Sum_probs=205.8
Q ss_pred CcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEE
Q 011751 14 PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGY 93 (478)
Q Consensus 14 ~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~ 93 (478)
..++.|+++++.+..|+++++++|||+|||.++.+.++.. +..++|+.|+++|+.++...+.. .+ ....+
T Consensus 460 sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-----~GiTLVISPLiSLmqDQV~~L~~-~G----I~Aa~ 529 (1195)
T PLN03137 460 SFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-----PGITLVISPLVSLIQDQIMNLLQ-AN----IPAAS 529 (1195)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-----CCcEEEEeCHHHHHHHHHHHHHh-CC----CeEEE
Confidence 5789999999999999999999999999995444444332 24689999999999866555432 12 11111
Q ss_pred EEeec--------------------ccCChhhhH------HHHhhC-cCcCCCcceEeecccccchhhhHHHHHHHHHHH
Q 011751 94 SIRFD--------------------DRTSTSTRI------KEALLD-PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQN 146 (478)
Q Consensus 94 ~~~~~--------------------~~~~~~~~~------~~~l~~-~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~ 146 (478)
..... ....+..++ ...+.. .....+++|||||||+...+...+..-.+.+..
T Consensus 530 L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~ 609 (1195)
T PLN03137 530 LSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGI 609 (1195)
T ss_pred EECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHH
Confidence 11100 000111111 111111 113458899999999866555443333332221
Q ss_pred hhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCCh---hHHHhhhCCCCeEEeCCccc
Q 011751 147 ARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA---RGFSEYFGCAKAVHVQGRQF 223 (478)
Q Consensus 147 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~---~~~~~~~~~~~~~~~~~~~~ 223 (478)
.+. ..++.+++++|||++. +++.+.++......+.....
T Consensus 610 Lr~--------------------------------------~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~ 651 (1195)
T PLN03137 610 LKQ--------------------------------------KFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFN 651 (1195)
T ss_pred HHH--------------------------------------hCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccC
Confidence 110 0156789999999944 35666666444333333333
Q ss_pred cceEEecCCCCcchHHHHHHHHHHhhh-cCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHH
Q 011751 224 PVEILYTLYPEPDYLDATLITIFQVHL-DEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQ 302 (478)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r 302 (478)
..++.|...+.... ....+..... .......||||+++++++.++..|.+. ++.+..|||+|++++|
T Consensus 652 RpNL~y~Vv~k~kk---~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~---------Gika~~YHAGLs~eeR 719 (1195)
T PLN03137 652 RPNLWYSVVPKTKK---CLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEF---------GHKAAFYHGSMDPAQR 719 (1195)
T ss_pred ccceEEEEeccchh---HHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHC---------CCCeeeeeCCCCHHHH
Confidence 33444443333221 1122222222 223567899999999999999999876 8899999999999999
Q ss_pred HhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEE
Q 011751 303 MRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCF 381 (478)
Q Consensus 303 ~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~ 381 (478)
..+++.|..|+.+|||||+++++|||+|+|++||+ || .|.|.++|+||+|||||.| +|.|+
T Consensus 720 ~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIH--------yd----------lPkSiEsYyQriGRAGRDG~~g~cI 781 (1195)
T PLN03137 720 AFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH--------HS----------LPKSIEGYHQECGRAGRDGQRSSCV 781 (1195)
T ss_pred HHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEE--------cC----------CCCCHHHHHhhhcccCCCCCCceEE
Confidence 99999999999999999999999999999999999 66 6899999999999999999 99999
Q ss_pred EecCHhhHhc
Q 011751 382 RLYPENEFDK 391 (478)
Q Consensus 382 ~l~~~~~~~~ 391 (478)
.+|+..++..
T Consensus 782 Llys~~D~~~ 791 (1195)
T PLN03137 782 LYYSYSDYIR 791 (1195)
T ss_pred EEecHHHHHH
Confidence 9998776643
No 40
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1e-36 Score=328.15 Aligned_cols=312 Identities=21% Similarity=0.189 Sum_probs=205.2
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCcc-------CCCcEEEEecchHHHHHHHHHHHHHH---
Q 011751 13 LPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC-------RDGKLIGVTQPRRVAAVTVAKRVAEE--- 82 (478)
Q Consensus 13 ~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~-------~~~~~i~~~~p~~~l~~~~~~~~~~~--- 82 (478)
-.++++|.++++.+.+|++++++||||||||..+.+.++..... .++..++++.|+++++.++.+++...
T Consensus 31 ~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~ 110 (876)
T PRK13767 31 GTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTE 110 (876)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999999999997666655543221 22457999999999999988765421
Q ss_pred -------hCCcC-CCEEEEEEeec--------------ccCChhhhHHHHhhCc----CcCCCcceEeecccccchhhhH
Q 011751 83 -------SGVEL-GQRVGYSIRFD--------------DRTSTSTRIKEALLDP----YLSRYSAIIVDEAHERTVHTDV 136 (478)
Q Consensus 83 -------~~~~~-~~~vg~~~~~~--------------~~~~~~~~~~~~l~~~----~l~~~~~lIiDE~H~r~~~~~~ 136 (478)
.+... +..++...+.. ....+...+..++..+ .+.++++||+||+|+..
T Consensus 111 i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~----- 185 (876)
T PRK13767 111 IREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLA----- 185 (876)
T ss_pred HHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhc-----
Confidence 12232 23333221110 0112222333333322 46899999999999421
Q ss_pred HHHHHHHHHHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC-ChhHHHhhhCCC--
Q 011751 137 LLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCA-- 213 (478)
Q Consensus 137 ~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~-~~~~~~~~~~~~-- 213 (478)
+..++.++...+.++......+.|+|++|||+ +.+.+++|++..
T Consensus 186 ---------------------------------~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~ 232 (876)
T PRK13767 186 ---------------------------------ENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYED 232 (876)
T ss_pred ---------------------------------cCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccc
Confidence 11111111111111111111567999999999 888999998653
Q ss_pred -----CeEEeCCcc-ccceEEecCC-------CCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhc
Q 011751 214 -----KAVHVQGRQ-FPVEILYTLY-------PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQ 280 (478)
Q Consensus 214 -----~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~ 280 (478)
+...+.... .+.+...... ............+.... ...+++||||||++.++.++..|.+.+..
T Consensus 233 ~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i--~~~~~~LVF~nTr~~ae~la~~L~~~~~~ 310 (876)
T PRK13767 233 DGEPRDCEIVDARFVKPFDIKVISPVDDLIHTPAEEISEALYETLHELI--KEHRTTLIFTNTRSGAERVLYNLRKRFPE 310 (876)
T ss_pred cCCCCceEEEccCCCccceEEEeccCccccccccchhHHHHHHHHHHHH--hcCCCEEEEeCCHHHHHHHHHHHHHhchh
Confidence 122222211 1111111110 11111122223333332 23678999999999999999999875431
Q ss_pred CCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeec
Q 011751 281 LPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPI 360 (478)
Q Consensus 281 ~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~ 360 (478)
. ..+..+..+||+|++++|..+++.|++|.++|||||+++++|||+|++++||+ |+ .|.
T Consensus 311 ~---~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~--------~~----------~P~ 369 (876)
T PRK13767 311 E---YDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVL--------LG----------SPK 369 (876)
T ss_pred h---ccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEE--------eC----------CCC
Confidence 1 12457889999999999999999999999999999999999999999999999 66 588
Q ss_pred CHHHHHHhhcccCCCC----CCeEEEecC
Q 011751 361 SKAQALQRSGRAGREG----PGKCFRLYP 385 (478)
Q Consensus 361 s~~~~~Qr~GRaGR~~----~G~~~~l~~ 385 (478)
+.++|+||+|||||.+ .|.++..-.
T Consensus 370 sv~~ylQRiGRaGR~~g~~~~g~ii~~~~ 398 (876)
T PRK13767 370 SVSRLLQRIGRAGHRLGEVSKGRIIVVDR 398 (876)
T ss_pred CHHHHHHhcccCCCCCCCCCcEEEEEcCc
Confidence 9999999999999874 466666543
No 41
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-37 Score=292.03 Aligned_cols=328 Identities=19% Similarity=0.248 Sum_probs=239.8
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccC-----C-CcEEEEecchHHHHHHHHH
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-----D-GKLIGVTQPRRVAAVTVAK 77 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~-----~-~~~i~~~~p~~~l~~~~~~ 77 (478)
++.++..++-..+|+|...++.+..++++++-++||||||..+...+++..... + ...++++.|||+++.|+.+
T Consensus 18 ~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~ 97 (567)
T KOG0345|consen 18 LEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIRE 97 (567)
T ss_pred HHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHH
Confidence 455666666678999999999999999999999999999955544444433211 1 2358999999999999887
Q ss_pred HHHHHhCC----cCCCEEEEEEee-----------cccCChhhhHHHHhhC----cCcCCCcceEeecccccchhhhHHH
Q 011751 78 RVAEESGV----ELGQRVGYSIRF-----------DDRTSTSTRIKEALLD----PYLSRYSAIIVDEAHERTVHTDVLL 138 (478)
Q Consensus 78 ~~~~~~~~----~~~~~vg~~~~~-----------~~~~~~~~~~~~~l~~----~~l~~~~~lIiDE~H~r~~~~~~~l 138 (478)
-...+... .....+|...-. ...+.++.++..++.. ..+.++.++|+|||
T Consensus 98 V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEA----------- 166 (567)
T KOG0345|consen 98 VAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEA----------- 166 (567)
T ss_pred HHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecch-----------
Confidence 65443322 222233321100 0112344555566654 23558999999999
Q ss_pred HHHHHHHHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC--ChhHHHh-hhCCCCe
Q 011751 139 GLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSE-YFGCAKA 215 (478)
Q Consensus 139 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~--~~~~~~~-~~~~~~~ 215 (478)
|+++|++|..++..+++.++ .+.+.=++|||. ..+++.. .+.++..
T Consensus 167 ---------------------------DrLldmgFe~~~n~ILs~LP----KQRRTGLFSATq~~~v~dL~raGLRNpv~ 215 (567)
T KOG0345|consen 167 ---------------------------DRLLDMGFEASVNTILSFLP----KQRRTGLFSATQTQEVEDLARAGLRNPVR 215 (567)
T ss_pred ---------------------------HhHhcccHHHHHHHHHHhcc----cccccccccchhhHHHHHHHHhhccCcee
Confidence 69999999999999999999 667888999999 4556654 3445544
Q ss_pred EEeCCcc---cc--ceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEE
Q 011751 216 VHVQGRQ---FP--VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVT 290 (478)
Q Consensus 216 ~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v 290 (478)
+.+.... .| +..+|....... ....++++......+++|||.+|-..++-....+.... ....+
T Consensus 216 V~V~~k~~~~tPS~L~~~Y~v~~a~e----K~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l-------~~~~i 284 (567)
T KOG0345|consen 216 VSVKEKSKSATPSSLALEYLVCEADE----KLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLL-------KKREI 284 (567)
T ss_pred eeecccccccCchhhcceeeEecHHH----HHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHh-------CCCcE
Confidence 4443322 33 455555544333 33344555555568899999999999999998887763 27789
Q ss_pred EEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhc
Q 011751 291 VPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSG 370 (478)
Q Consensus 291 ~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~G 370 (478)
+.+||.|.+..|..+++.|++..-.+++|||++++|+|||+|++||+ || .|.+.++|+||+|
T Consensus 285 ~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ--------~D----------pP~~~~~FvHR~G 346 (567)
T KOG0345|consen 285 FSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQ--------FD----------PPKDPSSFVHRCG 346 (567)
T ss_pred EEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEe--------cC----------CCCChhHHHhhcc
Confidence 99999999999999999999988899999999999999999999999 99 4888999999999
Q ss_pred ccCCCC-CCeEEEecCH--hhHhcccC-CCCCcccc
Q 011751 371 RAGREG-PGKCFRLYPE--NEFDKLED-STKPEIKR 402 (478)
Q Consensus 371 RaGR~~-~G~~~~l~~~--~~~~~~~~-~~~pei~~ 402 (478)
|+||.| .|.++.|..+ +.|-.+.. ...|++.+
T Consensus 347 RTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~ 382 (567)
T KOG0345|consen 347 RTARAGREGNAIVFLNPREEAYVEFLRIKGKVELER 382 (567)
T ss_pred hhhhccCccceEEEecccHHHHHHHHHhcCccchhh
Confidence 999999 8988877744 44544433 33455543
No 42
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.3e-37 Score=279.12 Aligned_cols=314 Identities=19% Similarity=0.311 Sum_probs=233.3
Q ss_pred hHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCC-CcEEEEecchHHHHHHHHHHHHHHh
Q 011751 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD-GKLIGVTQPRRVAAVTVAKRVAEES 83 (478)
Q Consensus 5 ~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~-~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (478)
+-+...+...++|+|+.+++.|++|++++-+|.||||||+.+.+.+++...... +.-.+++.|||+++.|.++.+. ..
T Consensus 20 e~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~-al 98 (442)
T KOG0340|consen 20 EQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFI-AL 98 (442)
T ss_pred HHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHH-Hh
Confidence 334455566789999999999999999999999999999999888888766554 6678999999999999999874 34
Q ss_pred CCcCCCEEEEEEeeccc--------------CChhhhHHHHhhC------cCcCCCcceEeecccccchhhhHHHHHHHH
Q 011751 84 GVELGQRVGYSIRFDDR--------------TSTSTRIKEALLD------PYLSRYSAIIVDEAHERTVHTDVLLGLLKK 143 (478)
Q Consensus 84 ~~~~~~~vg~~~~~~~~--------------~~~~~~~~~~l~~------~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~ 143 (478)
|...+..+...+++... .....++...+.. ..++++.++|+|||
T Consensus 99 Gk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEA---------------- 162 (442)
T KOG0340|consen 99 GKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEA---------------- 162 (442)
T ss_pred cccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecch----------------
Confidence 44444544433333222 2223333333221 23788999999999
Q ss_pred HHHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChhHHHhhhCCCC----eEEeC
Q 011751 144 VQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAK----AVHVQ 219 (478)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~----~~~~~ 219 (478)
|.+++..+...++-+...++ ...|.+++|||++- .+...++.+. .+..+
T Consensus 163 ----------------------DrvL~~~f~d~L~~i~e~lP----~~RQtLlfSATitd-~i~ql~~~~i~k~~a~~~e 215 (442)
T KOG0340|consen 163 ----------------------DRVLAGCFPDILEGIEECLP----KPRQTLLFSATITD-TIKQLFGCPITKSIAFELE 215 (442)
T ss_pred ----------------------hhhhccchhhHHhhhhccCC----CccceEEEEeehhh-HHHHhhcCCcccccceEEe
Confidence 58888888888877777776 56799999999921 2223333221 11111
Q ss_pred ---Cccc--cceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcc
Q 011751 220 ---GRQF--PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIF 294 (478)
Q Consensus 220 ---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h 294 (478)
+... .+...|...+.. -.+..+-.++.....++.++++||+++..+|+.++..|... .+.+..+|
T Consensus 216 ~~~~vstvetL~q~yI~~~~~-vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~l---------e~r~~~lH 285 (442)
T KOG0340|consen 216 VIDGVSTVETLYQGYILVSID-VKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNL---------EVRVVSLH 285 (442)
T ss_pred ccCCCCchhhhhhheeecchh-hhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhh---------ceeeeehh
Confidence 1110 112222222221 12222333444445556899999999999999999999887 89999999
Q ss_pred CCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCC
Q 011751 295 SSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGR 374 (478)
Q Consensus 295 ~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR 374 (478)
|.|++.+|...+..|+.+..+||||||++++|+|||.|+.||| || .|.++.+|+||+||+.|
T Consensus 286 s~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN--------~d----------iPr~P~~yiHRvGRtAR 347 (442)
T KOG0340|consen 286 SQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVN--------HD----------IPRDPKDYIHRVGRTAR 347 (442)
T ss_pred hcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEe--------cC----------CCCCHHHHHHhhcchhc
Confidence 9999999999999999999999999999999999999999999 88 68999999999999999
Q ss_pred CC-CCeEEEecCHhhHh
Q 011751 375 EG-PGKCFRLYPENEFD 390 (478)
Q Consensus 375 ~~-~G~~~~l~~~~~~~ 390 (478)
.| .|.++.++++.+.+
T Consensus 348 AGR~G~aiSivt~rDv~ 364 (442)
T KOG0340|consen 348 AGRKGMAISIVTQRDVE 364 (442)
T ss_pred ccCCcceEEEechhhHH
Confidence 99 89999999866543
No 43
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=2.4e-36 Score=315.59 Aligned_cols=305 Identities=16% Similarity=0.226 Sum_probs=208.0
Q ss_pred HHHhhhcC-CcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhC
Q 011751 6 ILQQRKSL-PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (478)
Q Consensus 6 ~~~~~~~~-~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (478)
+++....+ ..++.|.++++.+.+|+++++++|||+|||.++...++.. +..++|+.|+++++.++.+.+.. .+
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~-----~g~~lVisPl~sL~~dq~~~l~~-~g 77 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-----KGLTVVISPLISLMKDQVDQLRA-AG 77 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc-----CCcEEEEcCCHHHHHHHHHHHHH-cC
Confidence 33333333 5789999999999999999999999999995544443322 23578889999999988887754 23
Q ss_pred CcCCCEEEEEEeecccC------------------ChhhhHH--HHhhCcCcCCCcceEeecccccchhhhHHHHHHHHH
Q 011751 85 VELGQRVGYSIRFDDRT------------------STSTRIK--EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKV 144 (478)
Q Consensus 85 ~~~~~~vg~~~~~~~~~------------------~~~~~~~--~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~ 144 (478)
. .+.+........ .+..++. .+.......++++|||||||+...+...+...++++
T Consensus 78 i----~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l 153 (591)
T TIGR01389 78 V----AAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRL 153 (591)
T ss_pred C----cEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHH
Confidence 2 222221110000 0011110 111112245789999999998766554444333333
Q ss_pred HHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChh---HHHhhhCCCC-eEEeCC
Q 011751 145 QNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR---GFSEYFGCAK-AVHVQG 220 (478)
Q Consensus 145 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~---~~~~~~~~~~-~~~~~~ 220 (478)
...+.. .++.+++++|||++.. ++.++++... ......
T Consensus 154 ~~l~~~--------------------------------------~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~ 195 (591)
T TIGR01389 154 GSLAER--------------------------------------FPQVPRIALTATADAETRQDIRELLRLADANEFITS 195 (591)
T ss_pred HHHHHh--------------------------------------CCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecC
Confidence 322100 0455699999999443 4667775332 222222
Q ss_pred ccccceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHH
Q 011751 221 RQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSE 300 (478)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~ 300 (478)
....++.|......+... .+........++++||||+|+++++.++..|... ++.+..+||+|+.+
T Consensus 196 -~~r~nl~~~v~~~~~~~~----~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~---------g~~~~~~H~~l~~~ 261 (591)
T TIGR01389 196 -FDRPNLRFSVVKKNNKQK----FLLDYLKKHRGQSGIIYASSRKKVEELAERLESQ---------GISALAYHAGLSNK 261 (591)
T ss_pred -CCCCCcEEEEEeCCCHHH----HHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhC---------CCCEEEEECCCCHH
Confidence 222233333222222222 2222223333678999999999999999999875 78899999999999
Q ss_pred HHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCe
Q 011751 301 QQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGK 379 (478)
Q Consensus 301 ~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~ 379 (478)
+|..+++.|.+|..+|||||+++++|||+|+|++||+ || .|.|.++|.||+|||||.| +|.
T Consensus 262 ~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~--------~~----------~p~s~~~y~Q~~GRaGR~G~~~~ 323 (591)
T TIGR01389 262 VRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIH--------YD----------MPGNLESYYQEAGRAGRDGLPAE 323 (591)
T ss_pred HHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEE--------cC----------CCCCHHHHhhhhccccCCCCCce
Confidence 9999999999999999999999999999999999999 66 5889999999999999999 899
Q ss_pred EEEecCHhhHh
Q 011751 380 CFRLYPENEFD 390 (478)
Q Consensus 380 ~~~l~~~~~~~ 390 (478)
|+.+|+.++..
T Consensus 324 ~il~~~~~d~~ 334 (591)
T TIGR01389 324 AILLYSPADIA 334 (591)
T ss_pred EEEecCHHHHH
Confidence 99999876643
No 44
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.3e-37 Score=295.33 Aligned_cols=310 Identities=19% Similarity=0.192 Sum_probs=231.7
Q ss_pred hcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccC-----------CCcEEEEecchHHHHHHHHHHH
Q 011751 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-----------DGKLIGVTQPRRVAAVTVAKRV 79 (478)
Q Consensus 11 ~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~-----------~~~~i~~~~p~~~l~~~~~~~~ 79 (478)
+.-.++++|+..++.+..|++++++|+||||||..+...+....+.. ....++++.|||+|+.|++.+.
T Consensus 93 ~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea 172 (482)
T KOG0335|consen 93 GYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEA 172 (482)
T ss_pred cccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHH
Confidence 33467899999999999999999999999999944444333222211 1367999999999999999988
Q ss_pred HHHhCCcCCCE-EEEEE------------eecccCChhhhHHHHhhC--cCcCCCcceEeecccccchhhhHHHHHHHHH
Q 011751 80 AEESGVELGQR-VGYSI------------RFDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKV 144 (478)
Q Consensus 80 ~~~~~~~~~~~-vg~~~------------~~~~~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~ 144 (478)
.+......-.. +.|.. +.+..+.+..++..++.. -.+++++++|+|||
T Consensus 173 ~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEA----------------- 235 (482)
T KOG0335|consen 173 RKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEA----------------- 235 (482)
T ss_pred HhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecch-----------------
Confidence 77665443221 11211 111223444555555543 35889999999999
Q ss_pred HHhhcccccCCCCCCCCCCCchhhhc-cCCCCCCccccccccCCCCCCceEEEEcCCC--ChhHHHhhhC-C-CCe---E
Q 011751 145 QNARSKSADGHSNGNNNNENSDMILD-RGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSEYFG-C-AKA---V 216 (478)
Q Consensus 145 ~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~--~~~~~~~~~~-~-~~~---~ 216 (478)
|.|+| ++|+..+..++.+....-....|.+++|||. +.+.++.+|- + ... -
T Consensus 236 ---------------------DrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~ 294 (482)
T KOG0335|consen 236 ---------------------DRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVG 294 (482)
T ss_pred ---------------------HHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEe
Confidence 58999 9999999999988865444678999999999 4455554443 2 211 2
Q ss_pred EeCCccccceEEecCCCCcchHHHHHHHHHHhhhcCCCC-----CEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEE
Q 011751 217 HVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPG-----DILVFLTGQEEIESVERLVQERLLQLPEASRKLVTV 291 (478)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~ 291 (478)
.+.+....+........+.+.....++.+.........+ +++|||.+++.+..++..|... ++...
T Consensus 295 rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~---------~~~~~ 365 (482)
T KOG0335|consen 295 RVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN---------GYPAK 365 (482)
T ss_pred eeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC---------CCCce
Confidence 222333344444444444454444444443333221234 7999999999999999999886 88999
Q ss_pred EccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcc
Q 011751 292 PIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGR 371 (478)
Q Consensus 292 ~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GR 371 (478)
.+||..++.+|.+.++.|+.|...++|||+++++|+|+|+|++||+ || .|.+..+|+||+||
T Consensus 366 sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIn--------yD----------mP~d~d~YvHRIGR 427 (482)
T KOG0335|consen 366 SIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVIN--------YD----------MPADIDDYVHRIGR 427 (482)
T ss_pred eecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEE--------ee----------cCcchhhHHHhccc
Confidence 9999999999999999999999999999999999999999999999 99 78899999999999
Q ss_pred cCCCC-CCeEEEecC
Q 011751 372 AGREG-PGKCFRLYP 385 (478)
Q Consensus 372 aGR~~-~G~~~~l~~ 385 (478)
+||.| .|.+..|++
T Consensus 428 TGR~Gn~G~atsf~n 442 (482)
T KOG0335|consen 428 TGRVGNGGRATSFFN 442 (482)
T ss_pred cccCCCCceeEEEec
Confidence 99999 899999998
No 45
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=3.6e-38 Score=288.80 Aligned_cols=315 Identities=20% Similarity=0.275 Sum_probs=235.4
Q ss_pred CchhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--hHHHHHHhh--cC-----ccCCCcEEEEecchHHHH
Q 011751 2 PRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFH--AG-----FCRDGKLIGVTQPRRVAA 72 (478)
Q Consensus 2 ~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT--~~~~~~~~~--~~-----~~~~~~~i~~~~p~~~l~ 72 (478)
++++.++.++...++|+|-+-++.+++|++.+-+|-|||||| +++|.+++. .. ....|...++++|+|+++
T Consensus 180 ~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELA 259 (610)
T KOG0341|consen 180 PLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELA 259 (610)
T ss_pred HHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHH
Confidence 356777888888999999999999999999999999999999 556665532 11 133477889999999999
Q ss_pred HHHHHHHHHHhC------Cc---CCCEEEEEE----------eecccCChhhhHHHHhhCc--CcCCCcceEeecccccc
Q 011751 73 VTVAKRVAEESG------VE---LGQRVGYSI----------RFDDRTSTSTRIKEALLDP--YLSRYSAIIVDEAHERT 131 (478)
Q Consensus 73 ~~~~~~~~~~~~------~~---~~~~vg~~~----------~~~~~~~~~~~~~~~l~~~--~l~~~~~lIiDE~H~r~ 131 (478)
.|...-+..+.. .+ ....+|... +.+..+.+..++..++... .+.-++++.+|||
T Consensus 260 rQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEA---- 335 (610)
T KOG0341|consen 260 RQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEA---- 335 (610)
T ss_pred HHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhH----
Confidence 988876544332 11 111222110 1112345556666666543 4566889999999
Q ss_pred hhhhHHHHHHHHHHHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCC--hhHHHhh
Q 011751 132 VHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLD--ARGFSEY 209 (478)
Q Consensus 132 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~--~~~~~~~ 209 (478)
|+|+|++|..++..++..+. ...|.+++|||++ .+.|++.
T Consensus 336 ----------------------------------DRmiDmGFEddir~iF~~FK----~QRQTLLFSATMP~KIQ~FAkS 377 (610)
T KOG0341|consen 336 ----------------------------------DRMIDMGFEDDIRTIFSFFK----GQRQTLLFSATMPKKIQNFAKS 377 (610)
T ss_pred ----------------------------------HHHhhccchhhHHHHHHHHh----hhhheeeeeccccHHHHHHHHh
Confidence 69999999999999998887 6789999999994 4456643
Q ss_pred hCCCCeEEeCCccccceEEecCCCCcchHH--HHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCC
Q 011751 210 FGCAKAVHVQGRQFPVEILYTLYPEPDYLD--ATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRK 287 (478)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~ 287 (478)
--..|+...-++.-..++.... +-+|+. ..+.-++.+.+ +...++||||..+.+++.+.++|--. +
T Consensus 378 ALVKPvtvNVGRAGAAsldViQ--evEyVkqEaKiVylLeCLQ-KT~PpVLIFaEkK~DVD~IhEYLLlK---------G 445 (610)
T KOG0341|consen 378 ALVKPVTVNVGRAGAASLDVIQ--EVEYVKQEAKIVYLLECLQ-KTSPPVLIFAEKKADVDDIHEYLLLK---------G 445 (610)
T ss_pred hcccceEEecccccccchhHHH--HHHHHHhhhhhhhHHHHhc-cCCCceEEEeccccChHHHHHHHHHc---------c
Confidence 3333333333333222221111 112222 22333334433 34678999999999999999988655 8
Q ss_pred eEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHH
Q 011751 288 LVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQ 367 (478)
Q Consensus 288 ~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Q 367 (478)
+.+..+|||-++++|...++.|+.|+-+|+||||+++.|+|+|++.+||| || +|...++|+|
T Consensus 446 VEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVIN--------yD----------MP~eIENYVH 507 (610)
T KOG0341|consen 446 VEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVIN--------YD----------MPEEIENYVH 507 (610)
T ss_pred ceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhcc--------CC----------ChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 88 7999999999
Q ss_pred hhcccCCCC-CCeEEEecCHhh
Q 011751 368 RSGRAGREG-PGKCFRLYPENE 388 (478)
Q Consensus 368 r~GRaGR~~-~G~~~~l~~~~~ 388 (478)
|+||+||.| .|.+..|++++.
T Consensus 508 RIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 508 RIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred HhcccCCCCCcceeeeeecccc
Confidence 999999999 999999998764
No 46
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-37 Score=291.38 Aligned_cols=314 Identities=20% Similarity=0.280 Sum_probs=232.8
Q ss_pred chhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCC----CcEEEEecchHHHHHHHHH-
Q 011751 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD----GKLIGVTQPRRVAAVTVAK- 77 (478)
Q Consensus 3 ~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~----~~~i~~~~p~~~l~~~~~~- 77 (478)
+++....-+.-.++|+|...++..+-|++++.||.||||||..+.+.+++..+-.+ ..+++++.|||+|+.|+..
T Consensus 192 lLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV 271 (691)
T KOG0338|consen 192 LLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSV 271 (691)
T ss_pred HHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHH
Confidence 44445555566789999999999999999999999999999777777766554322 3479999999999987655
Q ss_pred --HHHHHhCCcCCCEEEEEE----------eecccCChhhhHHHHhhC---cCcCCCcceEeecccccchhhhHHHHHHH
Q 011751 78 --RVAEESGVELGQRVGYSI----------RFDDRTSTSTRIKEALLD---PYLSRYSAIIVDEAHERTVHTDVLLGLLK 142 (478)
Q Consensus 78 --~~~~~~~~~~~~~vg~~~----------~~~~~~~~~~~~~~~l~~---~~l~~~~~lIiDE~H~r~~~~~~~l~~l~ 142 (478)
.++.+....++..+|... ..+..+.++.++...+.+ ..+.++.++|+|||
T Consensus 272 ~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEA--------------- 336 (691)
T KOG0338|consen 272 TKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEA--------------- 336 (691)
T ss_pred HHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechH---------------
Confidence 466666666666665321 112233444455444443 34889999999999
Q ss_pred HHHHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC--ChhHHHhhh-CCCCeEEeC
Q 011751 143 KVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSEYF-GCAKAVHVQ 219 (478)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~--~~~~~~~~~-~~~~~~~~~ 219 (478)
|+|++.+|...+-+++..|+ .+.|.+++|||| .+++++..- +.+..+.++
T Consensus 337 -----------------------DRMLeegFademnEii~lcp----k~RQTmLFSATMteeVkdL~slSL~kPvrifvd 389 (691)
T KOG0338|consen 337 -----------------------DRMLEEGFADEMNEIIRLCP----KNRQTMLFSATMTEEVKDLASLSLNKPVRIFVD 389 (691)
T ss_pred -----------------------HHHHHHHHHHHHHHHHHhcc----ccccceeehhhhHHHHHHHHHhhcCCCeEEEeC
Confidence 58999988888888888887 778999999999 566777653 333334443
Q ss_pred Ccc-cc--ceEEec-CCCCcch-HHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcc
Q 011751 220 GRQ-FP--VEILYT-LYPEPDY-LDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIF 294 (478)
Q Consensus 220 ~~~-~~--~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h 294 (478)
... .+ +...|. ..|..+. .+..+. .+....-...++||+.|++.+..+.-.|--. ++.+.-+|
T Consensus 390 ~~~~~a~~LtQEFiRIR~~re~dRea~l~---~l~~rtf~~~~ivFv~tKk~AHRl~IllGLl---------gl~agElH 457 (691)
T KOG0338|consen 390 PNKDTAPKLTQEFIRIRPKREGDREAMLA---SLITRTFQDRTIVFVRTKKQAHRLRILLGLL---------GLKAGELH 457 (691)
T ss_pred CccccchhhhHHHheeccccccccHHHHH---HHHHHhcccceEEEEehHHHHHHHHHHHHHh---------hchhhhhc
Confidence 322 11 111111 1111111 111111 1222222567999999999999988877554 88999999
Q ss_pred CCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCC
Q 011751 295 SSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGR 374 (478)
Q Consensus 295 ~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR 374 (478)
|+|++++|...++.|+++.++||||||++++|+||++|..||| |+ +|.+...|+||+||+.|
T Consensus 458 GsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVIN--------y~----------mP~t~e~Y~HRVGRTAR 519 (691)
T KOG0338|consen 458 GSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVIN--------YA----------MPKTIEHYLHRVGRTAR 519 (691)
T ss_pred ccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEe--------cc----------CchhHHHHHHHhhhhhh
Confidence 9999999999999999999999999999999999999999999 77 79999999999999999
Q ss_pred CC-CCeEEEecCHhh
Q 011751 375 EG-PGKCFRLYPENE 388 (478)
Q Consensus 375 ~~-~G~~~~l~~~~~ 388 (478)
.| .|..+.|+.+++
T Consensus 520 AGRaGrsVtlvgE~d 534 (691)
T KOG0338|consen 520 AGRAGRSVTLVGESD 534 (691)
T ss_pred cccCcceEEEecccc
Confidence 99 999999997654
No 47
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=3.9e-35 Score=302.38 Aligned_cols=367 Identities=18% Similarity=0.211 Sum_probs=247.6
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCcc------CCCcEEEEecchHHHHHHHHH
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC------RDGKLIGVTQPRRVAAVTVAK 77 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~------~~~~~i~~~~p~~~l~~~~~~ 77 (478)
++++..+ +-.+++.|.++++.+.+|+|++|+||||||||..+.+.++..... .++-.++|+.|.++|...+..
T Consensus 13 ~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~ 91 (814)
T COG1201 13 REWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRR 91 (814)
T ss_pred HHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHH
Confidence 4555555 667899999999999999999999999999996555555443332 235679999999999999988
Q ss_pred HHHHHhCCcCCCEEEEEEeecccCChh-----------------hhHHHHhhC----cCcCCCcceEeecccccchhhhH
Q 011751 78 RVAEESGVELGQRVGYSIRFDDRTSTS-----------------TRIKEALLD----PYLSRYSAIIVDEAHERTVHTDV 136 (478)
Q Consensus 78 ~~~~~~~~~~~~~vg~~~~~~~~~~~~-----------------~~~~~~l~~----~~l~~~~~lIiDE~H~r~~~~~~ 136 (478)
++..... ..|..+... +++++.. +.+..++.. ..+.+++++||||+|+
T Consensus 92 rL~~~~~-~~G~~v~vR---hGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHe------- 160 (814)
T COG1201 92 RLEEPLR-ELGIEVAVR---HGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHA------- 160 (814)
T ss_pred HHHHHHH-HcCCcccee---cCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhh-------
Confidence 8743322 333333211 2222222 222233332 3588999999999993
Q ss_pred HHHHHHHHHHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC-ChhHHHhhhCCCC-
Q 011751 137 LLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAK- 214 (478)
Q Consensus 137 ~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~-~~~~~~~~~~~~~- 214 (478)
+.+..||.++.-.+.++..... +.|.|++|||+ +++.+++|+....
T Consensus 161 -------------------------------l~~sKRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~~~varfL~g~~~ 208 (814)
T COG1201 161 -------------------------------LAESKRGVQLALSLERLRELAG-DFQRIGLSATVGPPEEVAKFLVGFGD 208 (814)
T ss_pred -------------------------------hhccccchhhhhhHHHHHhhCc-ccEEEeehhccCCHHHHHHHhcCCCC
Confidence 4444555555555555555443 89999999999 9999999997652
Q ss_pred ---eEEeCC-ccccceEEecCCCC---cchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCC
Q 011751 215 ---AVHVQG-RQFPVEILYTLYPE---PDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRK 287 (478)
Q Consensus 215 ---~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~ 287 (478)
++.+.. +...+++....... ..........+..+... ...+|||+||+..+|.++..|.+.. .
T Consensus 209 ~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~--~~ttLIF~NTR~~aE~l~~~L~~~~--------~ 278 (814)
T COG1201 209 PCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELVKK--HRTTLIFTNTRSGAERLAFRLKKLG--------P 278 (814)
T ss_pred ceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHHHhh--cCcEEEEEeChHHHHHHHHHHHHhc--------C
Confidence 222222 22222222222110 11223344455554433 4589999999999999999999873 3
Q ss_pred eEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHH
Q 011751 288 LVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQ 367 (478)
Q Consensus 288 ~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Q 367 (478)
..+..+||+++.+.|..+++.|++|.++++|||+.+|.|||+.+|+.||+ |. .|.+.+.++|
T Consensus 279 ~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq--------~~----------SP~sV~r~lQ 340 (814)
T COG1201 279 DIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQ--------LG----------SPKSVNRFLQ 340 (814)
T ss_pred CceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEE--------eC----------CcHHHHHHhH
Confidence 67899999999999999999999999999999999999999999999999 44 5999999999
Q ss_pred hhcccCCCC----CCeEEEecCHhhHhc--------ccCCCCCcccccCchHHHHHHHHcCCCCCCC-----------cc
Q 011751 368 RSGRAGREG----PGKCFRLYPENEFDK--------LEDSTKPEIKRCNLSNVILQLKALGVDDIIG-----------FD 424 (478)
Q Consensus 368 r~GRaGR~~----~G~~~~l~~~~~~~~--------~~~~~~pei~~~~l~~~~l~~~~~~~~~~~~-----------~~ 424 (478)
|+||+|+.- .|..+..-..+..+. -.....+++-..+|+-+.-++..+-+..... ++
T Consensus 341 RiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ivg~~~~~~~~~~~~y~~vrrayp 420 (814)
T COG1201 341 RIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIPKNPLDVLAQQIVGMALEKVWEVEEAYRVVRRAYP 420 (814)
T ss_pred hccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccCCCCCcchhHHHHHHHHHHhhCcCCHHHHHHHHHhccc
Confidence 999999865 455544442222222 1222344555556555544444332221110 12
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q 011751 425 FMEKPSRASIIKSLEQLFL 443 (478)
Q Consensus 425 ~~~~p~~~~l~~al~~L~~ 443 (478)
| ..-..+.+...+++|..
T Consensus 421 y-~~L~~e~f~~v~~~l~~ 438 (814)
T COG1201 421 Y-ADLSREDFRLVLRYLAG 438 (814)
T ss_pred c-ccCCHHHHHHHHHHHhh
Confidence 2 22457778888888877
No 48
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-36 Score=278.59 Aligned_cols=311 Identities=19% Similarity=0.276 Sum_probs=230.5
Q ss_pred HhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--hHHHHHHhhcCc-----cCCCcEEEEecchHHHHHHHHHHHH
Q 011751 8 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGF-----CRDGKLIGVTQPRRVAAVTVAKRVA 80 (478)
Q Consensus 8 ~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT--~~~~~~~~~~~~-----~~~~~~i~~~~p~~~l~~~~~~~~~ 80 (478)
...++-.++|+|.++|+.+++|.+++.+|.||+||| +++|-++..... ...+..++++.|+++|+.++.-...
T Consensus 236 kK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~ 315 (629)
T KOG0336|consen 236 KKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVK 315 (629)
T ss_pred HhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHh
Confidence 344556789999999999999999999999999999 455555432221 1235578999999999999987766
Q ss_pred HHhCCcCCCEEEEEEe------------ecccCChhhhHHHHhhC--cCcCCCcceEeecccccchhhhHHHHHHHHHHH
Q 011751 81 EESGVELGQRVGYSIR------------FDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQN 146 (478)
Q Consensus 81 ~~~~~~~~~~vg~~~~------------~~~~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~ 146 (478)
++.-.......-|... ++....+..++..+..+ ..+..+.++|+|||
T Consensus 316 kysyng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEA------------------- 376 (629)
T KOG0336|consen 316 KYSYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEA------------------- 376 (629)
T ss_pred HhhhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecch-------------------
Confidence 5543222111111111 11111222333333322 45889999999999
Q ss_pred hhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC--ChhHHHh-hhCCCCeEEeCCcc-
Q 011751 147 ARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSE-YFGCAKAVHVQGRQ- 222 (478)
Q Consensus 147 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~--~~~~~~~-~~~~~~~~~~~~~~- 222 (478)
|.|+|++|..++..+|-.+. ++.|.++.|||. .+..++. |+. .|++.+.+..
T Consensus 377 -------------------DrMLDMgFEpqIrkilldiR----PDRqtvmTSATWP~~VrrLa~sY~K-ep~~v~vGsLd 432 (629)
T KOG0336|consen 377 -------------------DRMLDMGFEPQIRKILLDIR----PDRQTVMTSATWPEGVRRLAQSYLK-EPMIVYVGSLD 432 (629)
T ss_pred -------------------hhhhcccccHHHHHHhhhcC----CcceeeeecccCchHHHHHHHHhhh-CceEEEecccc
Confidence 69999999999999988887 899999999999 5567774 554 4555554433
Q ss_pred ----ccceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCC
Q 011751 223 ----FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLP 298 (478)
Q Consensus 223 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~ 298 (478)
..++..+....+.+..+. +..... ...+..++||||..+..++.+..-|.-. ++....+||+-.
T Consensus 433 L~a~~sVkQ~i~v~~d~~k~~~-~~~f~~--~ms~ndKvIiFv~~K~~AD~LSSd~~l~---------gi~~q~lHG~r~ 500 (629)
T KOG0336|consen 433 LVAVKSVKQNIIVTTDSEKLEI-VQFFVA--NMSSNDKVIIFVSRKVMADHLSSDFCLK---------GISSQSLHGNRE 500 (629)
T ss_pred eeeeeeeeeeEEecccHHHHHH-HHHHHH--hcCCCceEEEEEechhhhhhccchhhhc---------ccchhhccCChh
Confidence 234444433333333322 222222 2345788999999998888877666543 888999999999
Q ss_pred HHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-C
Q 011751 299 SEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-P 377 (478)
Q Consensus 299 ~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~ 377 (478)
+.+|+..++.|+.|.++||||||++++|+|+|||++|+| || +|...++|+||+||+||.| .
T Consensus 501 Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~N--------yD----------FP~nIeeYVHRvGrtGRaGr~ 562 (629)
T KOG0336|consen 501 QSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYN--------YD----------FPRNIEEYVHRVGRTGRAGRT 562 (629)
T ss_pred hhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeec--------cC----------CCccHHHHHHHhcccccCCCC
Confidence 999999999999999999999999999999999999999 88 7999999999999999999 9
Q ss_pred CeEEEecCHhhHhc
Q 011751 378 GKCFRLYPENEFDK 391 (478)
Q Consensus 378 G~~~~l~~~~~~~~ 391 (478)
|..+.+++.++...
T Consensus 563 G~sis~lt~~D~~~ 576 (629)
T KOG0336|consen 563 GTSISFLTRNDWSM 576 (629)
T ss_pred cceEEEEehhhHHH
Confidence 99999998877655
No 49
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-36 Score=287.48 Aligned_cols=316 Identities=17% Similarity=0.257 Sum_probs=239.4
Q ss_pred hHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhc----CccC-CCcEEEEecchHHHHHHHHHHH
Q 011751 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA----GFCR-DGKLIGVTQPRRVAAVTVAKRV 79 (478)
Q Consensus 5 ~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~----~~~~-~~~~i~~~~p~~~l~~~~~~~~ 79 (478)
+.+....+..++.+|++.++..+.|++++-.|.||||||..+...+++. .|.. .|.-++++.|||+++.|++.-+
T Consensus 82 kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL 161 (758)
T KOG0343|consen 82 KGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVL 161 (758)
T ss_pred HhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHH
Confidence 3445566677899999999999999999999999999994433333333 2322 3667899999999999999876
Q ss_pred HHHh---CCcCCCEEEEEE---------eecccCChhhhHHHHh-hCc--CcCCCcceEeecccccchhhhHHHHHHHHH
Q 011751 80 AEES---GVELGQRVGYSI---------RFDDRTSTSTRIKEAL-LDP--YLSRYSAIIVDEAHERTVHTDVLLGLLKKV 144 (478)
Q Consensus 80 ~~~~---~~~~~~~vg~~~---------~~~~~~~~~~~~~~~l-~~~--~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~ 144 (478)
.+.- ....|..+|... +....+-++.++...+ .++ ..+++.++|+|||
T Consensus 162 ~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEA----------------- 224 (758)
T KOG0343|consen 162 NKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEA----------------- 224 (758)
T ss_pred HHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccH-----------------
Confidence 5432 233344444211 0000111222332222 223 3568899999999
Q ss_pred HHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC--ChhHHHhh-hCCCCeEEeCC-
Q 011751 145 QNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSEY-FGCAKAVHVQG- 220 (478)
Q Consensus 145 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~--~~~~~~~~-~~~~~~~~~~~- 220 (478)
|+|+|++|..++..+++.++ +..|.+++|||. ++.++++. +.++..+.+..
T Consensus 225 ---------------------DR~LDMGFk~tL~~Ii~~lP----~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~ 279 (758)
T KOG0343|consen 225 ---------------------DRMLDMGFKKTLNAIIENLP----KKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHEN 279 (758)
T ss_pred ---------------------HHHHHHhHHHHHHHHHHhCC----hhheeeeeecccchhHHHHHHhhcCCCcEEEEecc
Confidence 69999999999999999998 778999999999 78888876 34444444431
Q ss_pred ----ccccceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCC
Q 011751 221 ----RQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSS 296 (478)
Q Consensus 221 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~ 296 (478)
.+..+..+|...+..+. +..++.........++|||+.|.+++.-++..+++. .+++.+..+||.
T Consensus 280 a~~atP~~L~Q~y~~v~l~~K----i~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rl-------rpg~~l~~L~G~ 348 (758)
T KOG0343|consen 280 AVAATPSNLQQSYVIVPLEDK----IDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRL-------RPGIPLLALHGT 348 (758)
T ss_pred ccccChhhhhheEEEEehhhH----HHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhc-------CCCCceeeeccc
Confidence 22334556665555444 444444445556788999999999999999988875 248899999999
Q ss_pred CCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC
Q 011751 297 LPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG 376 (478)
Q Consensus 297 l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~ 376 (478)
|++..|..++..|-..+--|++|||++++|+|+|.|++||+ || +|.+.++|+||+||+.|..
T Consensus 349 ~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ--------~D----------CPedv~tYIHRvGRtAR~~ 410 (758)
T KOG0343|consen 349 MSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQ--------VD----------CPEDVDTYIHRVGRTARYK 410 (758)
T ss_pred hhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEE--------ec----------CchhHHHHHHHhhhhhccc
Confidence 99999999999999888899999999999999999999999 88 8999999999999999999
Q ss_pred -CCeEEEecCHhhHhc
Q 011751 377 -PGKCFRLYPENEFDK 391 (478)
Q Consensus 377 -~G~~~~l~~~~~~~~ 391 (478)
.|.++.+.++++.+.
T Consensus 411 ~~G~sll~L~psEeE~ 426 (758)
T KOG0343|consen 411 ERGESLLMLTPSEEEA 426 (758)
T ss_pred CCCceEEEEcchhHHH
Confidence 999999998776443
No 50
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=3.5e-35 Score=298.81 Aligned_cols=410 Identities=16% Similarity=0.199 Sum_probs=267.3
Q ss_pred HHHHHHHHHHH-hcCCEEEEEcCCCCcHHhHHHHHHhhcCcc--------CCCcEEEEecchHHHHHHHHHHHHHHhCCc
Q 011751 16 ASVEKRLVEEV-RKNDILIIVGETGSGKTTQLPQFLFHAGFC--------RDGKLIGVTQPRRVAAVTVAKRVAEESGVE 86 (478)
Q Consensus 16 ~~~q~~~~~~l-~~~~~~~i~apTGsGKT~~~~~~~~~~~~~--------~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~ 86 (478)
-.+|.++.+.. ..+.|.+||||||||||-++.+.+++.... .++-++++++|.++||.++.+.+.+.+. .
T Consensus 112 N~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~-~ 190 (1230)
T KOG0952|consen 112 NRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLA-P 190 (1230)
T ss_pred HHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcc-c
Confidence 35788888775 477899999999999998888877654432 2355899999999999999998877665 3
Q ss_pred CCCEEEEEEeecccCChhhhHH----------------HHh-hCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhc
Q 011751 87 LGQRVGYSIRFDDRTSTSTRIK----------------EAL-LDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARS 149 (478)
Q Consensus 87 ~~~~vg~~~~~~~~~~~~~~~~----------------~~l-~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~ 149 (478)
+|..|+ ...++......+..+ ... ...+++.+++|||||+|
T Consensus 191 ~gi~v~-ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVH--------------------- 248 (1230)
T KOG0952|consen 191 LGISVR-ELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVH--------------------- 248 (1230)
T ss_pred ccceEE-EecCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeeh---------------------
Confidence 455544 122222222211111 111 12457889999999999
Q ss_pred ccccCCCCCCCCCCCchhhhccCCCCCCccccccccC---CCCCCceEEEEcCCC-ChhHHHhhhCCC---CeEEeCCcc
Q 011751 150 KSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQG---RKFAPLKLIIMSASL-DARGFSEYFGCA---KAVHVQGRQ 222 (478)
Q Consensus 150 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~lSAT~-~~~~~~~~~~~~---~~~~~~~~~ 222 (478)
|+...||+.++.++.+..+ .....+|+|++|||+ |.+++++|++.. .++.++++.
T Consensus 249 ------------------lLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~y 310 (1230)
T KOG0952|consen 249 ------------------LLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRY 310 (1230)
T ss_pred ------------------hhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccc
Confidence 3333333333333333321 112668999999999 999999999874 356666666
Q ss_pred ccceE--EecCCCCc--chHHHH-----HHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCC-------CCCC
Q 011751 223 FPVEI--LYTLYPEP--DYLDAT-----LITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLP-------EASR 286 (478)
Q Consensus 223 ~~~~~--~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~-------~~~~ 286 (478)
.|+.+ .+...... ...... ...+.... ..+.+++|||++++++.+.|+.|.+...... ....
T Consensus 311 RPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~--~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~ 388 (1230)
T KOG0952|consen 311 RPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFL--QEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRN 388 (1230)
T ss_pred cccceeeeEEeeecccchhhhhhHHHHHHHHHHHHH--HcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhh
Confidence 55543 33332222 111122 22333332 3488999999999999999999988755221 1111
Q ss_pred C-------eEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeee
Q 011751 287 K-------LVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVP 359 (478)
Q Consensus 287 ~-------~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~ 359 (478)
+ ..+..+|+||..++|..++..|..|.++|++||+++++|+|+|+--++|. .++.||+..|.- .-
T Consensus 389 k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIK----GT~~ydsskg~f----~d 460 (1230)
T KOG0952|consen 389 KQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIK----GTQVYDSSKGSF----VD 460 (1230)
T ss_pred HHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEec----CCcccccccCce----ee
Confidence 1 35667899999999999999999999999999999999999999999986 788999887643 35
Q ss_pred cCHHHHHHhhcccCCCC---CCeEEEecCHhh---HhcccCCC---------------CCcccccCchHHHHHHHHcCCC
Q 011751 360 ISKAQALQRSGRAGREG---PGKCFRLYPENE---FDKLEDST---------------KPEIKRCNLSNVILQLKALGVD 418 (478)
Q Consensus 360 ~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~---~~~~~~~~---------------~pei~~~~l~~~~l~~~~~~~~ 418 (478)
.+..+.+|..|||||++ .|..+.+-+.+. |..+.... ..||.-..+.++--.+.+++..
T Consensus 461 lgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yT 540 (1230)
T KOG0952|consen 461 LGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYT 540 (1230)
T ss_pred ehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhce
Confidence 77889999999999999 788887776543 33333222 2233322222222222332211
Q ss_pred --------CCCC----ccCC--CCCCHH----HHHHHHHHHHHCCCC--CC-CC--CCCHHHHHHhccCCCCHhhhchhe
Q 011751 419 --------DIIG----FDFM--EKPSRA----SIIKSLEQLFLLGAL--TD-DC--KLSDPVGHQMARLPLDPIYSKALI 475 (478)
Q Consensus 419 --------~~~~----~~~~--~~p~~~----~l~~al~~L~~~g~l--~~-~~--~~t~~lG~~~~~~~~~p~~~~~l~ 475 (478)
|... ...+ +|-..+ -+..++..|....++ |. ++ ..|+ +||.++.+|+.....+-++
T Consensus 541 ylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~~~~L~~~qmi~~D~~t~~~~std-lGR~aS~yYik~ETme~~n 619 (1230)
T KOG0952|consen 541 YLYVRMRKNPMAYGISYEELEPDPRLESHRRELCLVAAMELDKVQMIRFDERTGYLKSTD-LGRVASNYYIKYETMETFN 619 (1230)
T ss_pred eEEEEeccChHHhhhhhhcccCCchHHHHHHHHHHHHHHHhhhhheEEEecccceEcccc-hhhhhhhhhhhhHHHHHHH
Confidence 1111 1111 222222 233455666555444 22 23 6898 9999999999999888776
Q ss_pred ec
Q 011751 476 VA 477 (478)
Q Consensus 476 ~~ 477 (478)
+.
T Consensus 620 n~ 621 (1230)
T KOG0952|consen 620 NL 621 (1230)
T ss_pred hc
Confidence 54
No 51
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-34 Score=265.01 Aligned_cols=316 Identities=18% Similarity=0.197 Sum_probs=236.9
Q ss_pred HHHhhhcCCcHHHHHHHHHHHhcC--CEEEEEcCCCCcHHhHHHHHHhhcC-ccCCCcEEEEecchHHHHHHHHHHHHHH
Q 011751 6 ILQQRKSLPIASVEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLFHAG-FCRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (478)
Q Consensus 6 ~~~~~~~~~~~~~q~~~~~~l~~~--~~~~i~apTGsGKT~~~~~~~~~~~-~~~~~~~i~~~~p~~~l~~~~~~~~~~~ 82 (478)
.+...++-.+..+|+.+++.++.+ ++++.++.+|+|||+.+.+.++-.. ........+|+.|+|+++.|+.+-+. +
T Consensus 104 gly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~-e 182 (477)
T KOG0332|consen 104 GLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVE-E 182 (477)
T ss_pred HHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHHH-H
Confidence 344456667889999999998754 7999999999999977766665332 22224568888999999999998664 4
Q ss_pred hCCcCCCEEEEEEeeccc-----------C-ChhhhHH--HHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhh
Q 011751 83 SGVELGQRVGYSIRFDDR-----------T-STSTRIK--EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (478)
Q Consensus 83 ~~~~~~~~vg~~~~~~~~-----------~-~~~~~~~--~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~ 148 (478)
.|...+.+..|.++.... . ++.+... ..+..-.+..++++|+|||+
T Consensus 183 MGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD-------------------- 242 (477)
T KOG0332|consen 183 MGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEAD-------------------- 242 (477)
T ss_pred hcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchh--------------------
Confidence 454445667776654311 0 1111111 12223457789999999996
Q ss_pred cccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC--ChhHHH-hhhCCCCeEEeCCcc---
Q 011751 149 SKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFS-EYFGCAKAVHVQGRQ--- 222 (478)
Q Consensus 149 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~--~~~~~~-~~~~~~~~~~~~~~~--- 222 (478)
.|+..++++.+...++..++ .+.|++++|||. ....|+ ..+.++..+.+....
T Consensus 243 -----------------~Mi~tqG~~D~S~rI~~~lP----~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L 301 (477)
T KOG0332|consen 243 -----------------VMIDTQGFQDQSIRIMRSLP----RNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELAL 301 (477)
T ss_pred -----------------hhhhcccccccchhhhhhcC----CcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccc
Confidence 35555778888777877777 678999999999 444555 455666666665443
Q ss_pred ccceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHH
Q 011751 223 FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQ 302 (478)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r 302 (478)
.++..+|...+..+..-. .+..+...-.-|+.+|||.|++.++.++..+... +..|..+||+|..++|
T Consensus 302 ~~IkQlyv~C~~~~~K~~---~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~---------Gh~V~~l~G~l~~~~R 369 (477)
T KOG0332|consen 302 DNIKQLYVLCACRDDKYQ---ALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAE---------GHQVSLLHGDLTVEQR 369 (477)
T ss_pred cchhhheeeccchhhHHH---HHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhc---------CceeEEeeccchhHHH
Confidence 466667766665544333 3334443344689999999999999999999987 9999999999999999
Q ss_pred HhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEE
Q 011751 303 MRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCF 381 (478)
Q Consensus 303 ~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~ 381 (478)
..+.+.|++|+.+|||+||+++||+|++.|++||| ||-..... ...+.++|+||+||+||.| .|.++
T Consensus 370 ~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvN--------ydlP~~~~----~~pD~etYlHRiGRtGRFGkkG~a~ 437 (477)
T KOG0332|consen 370 AAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVN--------YDLPVKYT----GEPDYETYLHRIGRTGRFGKKGLAI 437 (477)
T ss_pred HHHHHHHhcCcceEEEEechhhcccccceEEEEEe--------cCCccccC----CCCCHHHHHHHhcccccccccceEE
Confidence 99999999999999999999999999999999999 77443332 2478899999999999999 99999
Q ss_pred EecCHh
Q 011751 382 RLYPEN 387 (478)
Q Consensus 382 ~l~~~~ 387 (478)
.++...
T Consensus 438 n~v~~~ 443 (477)
T KOG0332|consen 438 NLVDDK 443 (477)
T ss_pred Eeeccc
Confidence 988543
No 52
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=4.2e-34 Score=304.70 Aligned_cols=302 Identities=20% Similarity=0.260 Sum_probs=208.0
Q ss_pred hHHHhhhcCCcHHHHHHHHHHHhcC------CEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHH
Q 011751 5 KILQQRKSLPIASVEKRLVEEVRKN------DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKR 78 (478)
Q Consensus 5 ~~~~~~~~~~~~~~q~~~~~~l~~~------~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~ 78 (478)
+.......|.+++.|.++++.+.++ .+.+++||||||||.++..+++.... .+.++++++||++|+.|..+.
T Consensus 442 ~~~~~~~~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~--~g~qvlvLvPT~~LA~Q~~~~ 519 (926)
T TIGR00580 442 QEFEDSFPFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL--DGKQVAVLVPTTLLAQQHFET 519 (926)
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH--hCCeEEEEeCcHHHHHHHHHH
Confidence 3344455677899999999999885 68999999999999766665554432 256899999999999999999
Q ss_pred HHHHhCCcCCCEEEEEEeecccCChhhhH--------------HHHhh-CcCcCCCcceEeecccccchhhhHHHHHHHH
Q 011751 79 VAEESGVELGQRVGYSIRFDDRTSTSTRI--------------KEALL-DPYLSRYSAIIVDEAHERTVHTDVLLGLLKK 143 (478)
Q Consensus 79 ~~~~~~~~~~~~vg~~~~~~~~~~~~~~~--------------~~~l~-~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~ 143 (478)
+.+.+.. .+..++...+..........+ ..++. +..+.+++++||||+|...... ++
T Consensus 520 f~~~~~~-~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVIDEahrfgv~~-------~~ 591 (926)
T TIGR00580 520 FKERFAN-FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLIIDEEQRFGVKQ-------KE 591 (926)
T ss_pred HHHHhcc-CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEeecccccchhH-------HH
Confidence 8776542 334444322211100000000 02222 2357899999999999532211 11
Q ss_pred HHHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChhHHHhhh-CCCC--eEEeC-
Q 011751 144 VQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYF-GCAK--AVHVQ- 219 (478)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~-~~~~--~~~~~- 219 (478)
. +..+. .++++++||||+.+..+...+ +... .+..+
T Consensus 592 ~------------------------------------L~~~~----~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p 631 (926)
T TIGR00580 592 K------------------------------------LKELR----TSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPP 631 (926)
T ss_pred H------------------------------------HHhcC----CCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCC
Confidence 1 11111 567999999999766655332 2222 22222
Q ss_pred CccccceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCH
Q 011751 220 GRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPS 299 (478)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~ 299 (478)
....++..++..... ......+.... ..+++++||||+.++++.+++.|.+.+ +++.+..+||+|++
T Consensus 632 ~~R~~V~t~v~~~~~----~~i~~~i~~el--~~g~qv~if~n~i~~~e~l~~~L~~~~-------p~~~v~~lHG~m~~ 698 (926)
T TIGR00580 632 EDRLPVRTFVMEYDP----ELVREAIRREL--LRGGQVFYVHNRIESIEKLATQLRELV-------PEARIAIAHGQMTE 698 (926)
T ss_pred CCccceEEEEEecCH----HHHHHHHHHHH--HcCCeEEEEECCcHHHHHHHHHHHHhC-------CCCeEEEecCCCCH
Confidence 122355554443221 11112222222 237899999999999999999998753 26789999999999
Q ss_pred HHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CC
Q 011751 300 EQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PG 378 (478)
Q Consensus 300 ~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G 378 (478)
++|+++++.|++|+.+|||||+++++|+|+|++++||. ||+. ..+.++|.||+||+||.| .|
T Consensus 699 ~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi--------~~a~---------~~gls~l~Qr~GRvGR~g~~g 761 (926)
T TIGR00580 699 NELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIII--------ERAD---------KFGLAQLYQLRGRVGRSKKKA 761 (926)
T ss_pred HHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEE--------ecCC---------CCCHHHHHHHhcCCCCCCCCe
Confidence 99999999999999999999999999999999999997 5532 234567999999999999 99
Q ss_pred eEEEecCH
Q 011751 379 KCFRLYPE 386 (478)
Q Consensus 379 ~~~~l~~~ 386 (478)
.||.+++.
T Consensus 762 ~aill~~~ 769 (926)
T TIGR00580 762 YAYLLYPH 769 (926)
T ss_pred EEEEEECC
Confidence 99999964
No 53
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-35 Score=266.13 Aligned_cols=305 Identities=18% Similarity=0.224 Sum_probs=227.8
Q ss_pred hcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--hHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCC
Q 011751 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELG 88 (478)
Q Consensus 11 ~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT--~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~ 88 (478)
++-.+.|+|++.++..+.|++++..|.+|+||| +++|.+-.... .......++++|+|+++.|..... ++.+...+
T Consensus 104 G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~-~~~~IQ~~ilVPtrelALQtSqvc-~~lskh~~ 181 (459)
T KOG0326|consen 104 GFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDP-KKNVIQAIILVPTRELALQTSQVC-KELSKHLG 181 (459)
T ss_pred ccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCc-cccceeEEEEeecchhhHHHHHHH-HHHhcccC
Confidence 344578999999999999999999999999999 55555433222 223456889999999998776532 33333333
Q ss_pred CEEEEEEeec--------------ccCChhhhHHHHhhC--cCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccc
Q 011751 89 QRVGYSIRFD--------------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSA 152 (478)
Q Consensus 89 ~~vg~~~~~~--------------~~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~ 152 (478)
..+....++. -.+.+..++..+... ..+++...+|+|||
T Consensus 182 i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEA------------------------- 236 (459)
T KOG0326|consen 182 IKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEA------------------------- 236 (459)
T ss_pred eEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechh-------------------------
Confidence 3322211111 112444555555544 45889999999999
Q ss_pred cCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC--ChhHH-HhhhCCCCeEEeCCcc--ccceE
Q 011751 153 DGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGF-SEYFGCAKAVHVQGRQ--FPVEI 227 (478)
Q Consensus 153 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~--~~~~~-~~~~~~~~~~~~~~~~--~~~~~ 227 (478)
|.+++..|...++.++..++ ...|++++|||. .+..| .+++.++-.+..-... ..+..
T Consensus 237 -------------DKlLs~~F~~~~e~li~~lP----~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQ 299 (459)
T KOG0326|consen 237 -------------DKLLSVDFQPIVEKLISFLP----KERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQ 299 (459)
T ss_pred -------------hhhhchhhhhHHHHHHHhCC----ccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhh
Confidence 58899999998888888888 778999999999 34444 4677665444433322 33445
Q ss_pred EecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcC
Q 011751 228 LYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFA 307 (478)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~ 307 (478)
+|....+.+.+ ..+.+++ ..-.-.+.+|||||.+.+|.+|+.+.+. ++.++.+|+.|.++.|.+++.
T Consensus 300 yYafV~e~qKv-hCLntLf---skLqINQsIIFCNS~~rVELLAkKITel---------GyscyyiHakM~Q~hRNrVFH 366 (459)
T KOG0326|consen 300 YYAFVEERQKV-HCLNTLF---SKLQINQSIIFCNSTNRVELLAKKITEL---------GYSCYYIHAKMAQEHRNRVFH 366 (459)
T ss_pred heeeechhhhh-hhHHHHH---HHhcccceEEEeccchHhHHHHHHHHhc---------cchhhHHHHHHHHhhhhhhhh
Confidence 55444433322 2233333 3334567999999999999999999987 999999999999999999999
Q ss_pred cCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEEecCH
Q 011751 308 PAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPE 386 (478)
Q Consensus 308 ~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~ 386 (478)
.|++|..+.+||||.+.+|||+++|++||| || +|.+.++|+||+||+||.| .|.++.|++-
T Consensus 367 dFr~G~crnLVctDL~TRGIDiqavNvVIN--------FD----------fpk~aEtYLHRIGRsGRFGhlGlAInLity 428 (459)
T KOG0326|consen 367 DFRNGKCRNLVCTDLFTRGIDIQAVNVVIN--------FD----------FPKNAETYLHRIGRSGRFGHLGLAINLITY 428 (459)
T ss_pred hhhccccceeeehhhhhcccccceeeEEEe--------cC----------CCCCHHHHHHHccCCccCCCcceEEEEEeh
Confidence 999999999999999999999999999999 77 7999999999999999999 9999999976
Q ss_pred hhHh
Q 011751 387 NEFD 390 (478)
Q Consensus 387 ~~~~ 390 (478)
++-.
T Consensus 429 edrf 432 (459)
T KOG0326|consen 429 EDRF 432 (459)
T ss_pred hhhh
Confidence 6443
No 54
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=3.4e-34 Score=313.21 Aligned_cols=290 Identities=20% Similarity=0.224 Sum_probs=187.9
Q ss_pred EEcCCCCcHHhHHHHHHhhcCcc-----------CCCcEEEEecchHHHHHHHHHHHHHHh----------C-CcCCCEE
Q 011751 34 IVGETGSGKTTQLPQFLFHAGFC-----------RDGKLIGVTQPRRVAAVTVAKRVAEES----------G-VELGQRV 91 (478)
Q Consensus 34 i~apTGsGKT~~~~~~~~~~~~~-----------~~~~~i~~~~p~~~l~~~~~~~~~~~~----------~-~~~~~~v 91 (478)
|++|||||||..+.+.++..... .++.+++|+.|+++|+.++.+++.... + ...+..+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999996666655433221 135689999999999999998875311 1 1223444
Q ss_pred EEEEeec--------------ccCChhhhHHHHhhC---cCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccC
Q 011751 92 GYSIRFD--------------DRTSTSTRIKEALLD---PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADG 154 (478)
Q Consensus 92 g~~~~~~--------------~~~~~~~~~~~~l~~---~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~ 154 (478)
+...+.. ..+.+..++..++.. ..++++++|||||+|+
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~------------------------- 135 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHA------------------------- 135 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHH-------------------------
Confidence 4322111 111223333334332 3689999999999993
Q ss_pred CCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC-ChhHHHhhhCCC-CeEEeCC---ccccceEEe
Q 011751 155 HSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCA-KAVHVQG---RQFPVEILY 229 (478)
Q Consensus 155 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~-~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~ 229 (478)
+++..+|.++...+.++......+.|+|++|||+ |.+++++|++.. ++..+.. +..++.+..
T Consensus 136 -------------L~g~kRG~~Lel~LeRL~~l~~~~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~v 202 (1490)
T PRK09751 136 -------------VAGSKRGAHLALSLERLDALLHTSAQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVV 202 (1490)
T ss_pred -------------hcccccccHHHHHHHHHHHhCCCCCeEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEEE
Confidence 3333344444444433333333568999999999 899999999754 3322221 112222221
Q ss_pred cCCCCcch---------------HH----HHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCC--------
Q 011751 230 TLYPEPDY---------------LD----ATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLP-------- 282 (478)
Q Consensus 230 ~~~~~~~~---------------~~----~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~-------- 282 (478)
......+. .. .....++... ...+++||||||++.|+.++..|++......
T Consensus 203 p~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~i--~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~ 280 (1490)
T PRK09751 203 PVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEV--LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAV 280 (1490)
T ss_pred ecCchhhccccccccccccchhhhhhhhHHHHHHHHHHH--hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccc
Confidence 11100000 00 0111122221 2367899999999999999999987532100
Q ss_pred ----------------CCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceee
Q 011751 283 ----------------EASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLY 346 (478)
Q Consensus 283 ----------------~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~y 346 (478)
.......+..|||+|++++|..+++.|++|++++||||+++++|||+|+|++||+ |
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq--------~ 352 (1490)
T PRK09751 281 DAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQ--------V 352 (1490)
T ss_pred hhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEE--------e
Confidence 0001234678999999999999999999999999999999999999999999999 5
Q ss_pred cCCCCcccceeeecCHHHHHHhhcccCCCC--CCeEE
Q 011751 347 DPVKGMESLLVVPISKAQALQRSGRAGREG--PGKCF 381 (478)
Q Consensus 347 d~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~--~G~~~ 381 (478)
+ .|.|.++|+||+|||||.. .+.++
T Consensus 353 g----------sP~sVas~LQRiGRAGR~~gg~s~gl 379 (1490)
T PRK09751 353 A----------TPLSVASGLQRIGRAGHQVGGVSKGL 379 (1490)
T ss_pred C----------CCCCHHHHHHHhCCCCCCCCCccEEE
Confidence 5 5899999999999999974 34444
No 55
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=2.8e-33 Score=294.60 Aligned_cols=298 Identities=18% Similarity=0.210 Sum_probs=202.4
Q ss_pred hhhcCCcHHHHHHHHHHHhcC------CEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHH
Q 011751 9 QRKSLPIASVEKRLVEEVRKN------DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (478)
Q Consensus 9 ~~~~~~~~~~q~~~~~~l~~~------~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~ 82 (478)
....|.+++.|+++++.+..+ .+.+++||||||||.++...++.... .+..++++.|+++++.|.++.+.+.
T Consensus 256 ~~l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~--~g~q~lilaPT~~LA~Q~~~~l~~l 333 (681)
T PRK10917 256 ASLPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE--AGYQAALMAPTEILAEQHYENLKKL 333 (681)
T ss_pred HhCCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH--cCCeEEEEeccHHHHHHHHHHHHHH
Confidence 345677999999999999887 48999999999999666655554432 3667999999999999999998776
Q ss_pred hCCcCCCEEEEEEeecccCChhhhHH--------------HHhh-CcCcCCCcceEeecccccchhhhHHHHHHHHHHHh
Q 011751 83 SGVELGQRVGYSIRFDDRTSTSTRIK--------------EALL-DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNA 147 (478)
Q Consensus 83 ~~~~~~~~vg~~~~~~~~~~~~~~~~--------------~~l~-~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~ 147 (478)
.. ..+..++...+..........+. ..+. ...+.+++++|+||+|...... +....
T Consensus 334 ~~-~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVIDE~Hrfg~~q-------r~~l~- 404 (681)
T PRK10917 334 LE-PLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVIIDEQHRFGVEQ-------RLALR- 404 (681)
T ss_pred Hh-hcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEEechhhhhHHH-------HHHHH-
Confidence 54 23445554332211000000010 1122 2347899999999999532111 00000
Q ss_pred hcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChhHHH-hhhCCCCeEEeCC---ccc
Q 011751 148 RSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFS-EYFGCAKAVHVQG---RQF 223 (478)
Q Consensus 148 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~-~~~~~~~~~~~~~---~~~ 223 (478)
+. ...+++++||||+.+..++ ..++......+.. ...
T Consensus 405 ----------------------~~-----------------~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~r~ 445 (681)
T PRK10917 405 ----------------------EK-----------------GENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPGRK 445 (681)
T ss_pred ----------------------hc-----------------CCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCCCC
Confidence 00 0356899999999666554 3334433333322 123
Q ss_pred cceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCH--------HHHHHHHHHHHHHHhcCCCCCCCeEEEEccC
Q 011751 224 PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQ--------EEIESVERLVQERLLQLPEASRKLVTVPIFS 295 (478)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~--------~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~ 295 (478)
|+...+.... ..+..+..+.... ..+++++||||.. ..++.+++.|.+.+. ++.+..+||
T Consensus 446 ~i~~~~~~~~---~~~~~~~~i~~~~--~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~-------~~~v~~lHG 513 (681)
T PRK10917 446 PITTVVIPDS---RRDEVYERIREEI--AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFP-------ELRVGLLHG 513 (681)
T ss_pred CcEEEEeCcc---cHHHHHHHHHHHH--HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCC-------CCcEEEEeC
Confidence 4444443322 2223333333332 3477999999954 445566677665432 467999999
Q ss_pred CCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCC
Q 011751 296 SLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGRE 375 (478)
Q Consensus 296 ~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~ 375 (478)
+|++++|+.+++.|++|+.+|||||+++++|+|+|++++||+ ||+.. .+.+++.||+||+||.
T Consensus 514 ~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi--------~~~~r---------~gls~lhQ~~GRvGR~ 576 (681)
T PRK10917 514 RMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVI--------ENAER---------FGLAQLHQLRGRVGRG 576 (681)
T ss_pred CCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEE--------eCCCC---------CCHHHHHHHhhcccCC
Confidence 999999999999999999999999999999999999999998 76421 2467899999999999
Q ss_pred C-CCeEEEecC
Q 011751 376 G-PGKCFRLYP 385 (478)
Q Consensus 376 ~-~G~~~~l~~ 385 (478)
| +|.||.+++
T Consensus 577 g~~g~~ill~~ 587 (681)
T PRK10917 577 AAQSYCVLLYK 587 (681)
T ss_pred CCceEEEEEEC
Confidence 9 999999995
No 56
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=9.7e-34 Score=282.16 Aligned_cols=293 Identities=19% Similarity=0.292 Sum_probs=211.7
Q ss_pred cHHHHHHHHHHHhcCCEEEEEcCCCCcHH--hHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEE
Q 011751 15 IASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVG 92 (478)
Q Consensus 15 ~~~~q~~~~~~l~~~~~~~i~apTGsGKT--~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg 92 (478)
-++-|.++++.+.++++++++.|||+||| +++|-.+.. | ..+++.|.-+|...+.+.+.. .|. ...
T Consensus 18 FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~~------G-~TLVVSPLiSLM~DQV~~l~~-~Gi----~A~ 85 (590)
T COG0514 18 FRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLLE------G-LTLVVSPLISLMKDQVDQLEA-AGI----RAA 85 (590)
T ss_pred cCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhcC------C-CEEEECchHHHHHHHHHHHHH-cCc----eee
Confidence 45679999999999999999999999999 677776662 3 688999999998877776533 221 111
Q ss_pred EEEeecccCChhhhHH-----------------------HHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhc
Q 011751 93 YSIRFDDRTSTSTRIK-----------------------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARS 149 (478)
Q Consensus 93 ~~~~~~~~~~~~~~~~-----------------------~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~ 149 (478)
+. .+..+..++.. ..+....-..+.+++||||||-+.|.+.+.--.+++...+.
T Consensus 86 ~l---nS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~ 162 (590)
T COG0514 86 YL---NSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRA 162 (590)
T ss_pred hh---hcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHh
Confidence 11 11111111110 00100114578999999999999998888777766665441
Q ss_pred ccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChh---HHHhhhCCCC-eEEeCCccccc
Q 011751 150 KSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR---GFSEYFGCAK-AVHVQGRQFPV 225 (478)
Q Consensus 150 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~---~~~~~~~~~~-~~~~~~~~~~~ 225 (478)
. .++++++++|||.+.. ++.+-++-.. .+...+ ....
T Consensus 163 ~--------------------------------------~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~s-fdRp 203 (590)
T COG0514 163 G--------------------------------------LPNPPVLALTATATPRVRDDIREQLGLQDANIFRGS-FDRP 203 (590)
T ss_pred h--------------------------------------CCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEec-CCCc
Confidence 1 1678999999999654 4444454332 222222 2222
Q ss_pred eEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhh
Q 011751 226 EILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRV 305 (478)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i 305 (478)
++.|...+..+...... .+.. ......+..||||.|++.++.++++|+.. ++.+..|||||+.++|..+
T Consensus 204 Ni~~~v~~~~~~~~q~~-fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~~---------g~~a~~YHaGl~~~eR~~~ 272 (590)
T COG0514 204 NLALKVVEKGEPSDQLA-FLAT-VLPQLSKSGIIYCLTRKKVEELAEWLRKN---------GISAGAYHAGLSNEERERV 272 (590)
T ss_pred hhhhhhhhcccHHHHHH-HHHh-hccccCCCeEEEEeeHHhHHHHHHHHHHC---------CCceEEecCCCCHHHHHHH
Confidence 33333333222222222 2222 22445677999999999999999999987 8999999999999999999
Q ss_pred cCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEEec
Q 011751 306 FAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLY 384 (478)
Q Consensus 306 ~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~ 384 (478)
.+.|.++..+|+|||.++.+|||.|||++||| || .|.|.++|.|-+|||||.| +..|+.||
T Consensus 273 q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH--------~~----------lP~s~EsYyQE~GRAGRDG~~a~aill~ 334 (590)
T COG0514 273 QQAFLNDEIKVMVATNAFGMGIDKPDVRFVIH--------YD----------LPGSIESYYQETGRAGRDGLPAEAILLY 334 (590)
T ss_pred HHHHhcCCCcEEEEeccccCccCCCCceEEEE--------ec----------CCCCHHHHHHHHhhccCCCCcceEEEee
Confidence 99999999999999999999999999999999 77 6999999999999999999 99999999
Q ss_pred CHhhHh
Q 011751 385 PENEFD 390 (478)
Q Consensus 385 ~~~~~~ 390 (478)
.+.+..
T Consensus 335 ~~~D~~ 340 (590)
T COG0514 335 SPEDIR 340 (590)
T ss_pred ccccHH
Confidence 877644
No 57
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.1e-33 Score=284.84 Aligned_cols=322 Identities=17% Similarity=0.206 Sum_probs=236.1
Q ss_pred hhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCC
Q 011751 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ 89 (478)
Q Consensus 10 ~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~ 89 (478)
...|.+.++|++++..+..|.+++|.|+|.||||.++..++..+. .++.+.+|+.|.+++.+|-++.++..++. +|.
T Consensus 293 ~~pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq--~h~TR~iYTSPIKALSNQKfRDFk~tF~D-vgL 369 (1248)
T KOG0947|consen 293 IYPFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ--KHMTRTIYTSPIKALSNQKFRDFKETFGD-VGL 369 (1248)
T ss_pred hCCCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH--hhccceEecchhhhhccchHHHHHHhccc-cce
Confidence 345678899999999999999999999999999988877775442 24678999999999999999999888873 443
Q ss_pred EEEEEEeeccc----CChhhhHHHHhhC--cCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccCCCCCCCCCC
Q 011751 90 RVGYSIRFDDR----TSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNE 163 (478)
Q Consensus 90 ~vg~~~~~~~~----~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~ 163 (478)
..| .++.... .-+-+.++.++-+ ..++++.+||+||+|
T Consensus 370 lTG-DvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVH----------------------------------- 413 (1248)
T KOG0947|consen 370 LTG-DVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH----------------------------------- 413 (1248)
T ss_pred eec-ceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeee-----------------------------------
Confidence 333 2222222 2233445555533 468889999999999
Q ss_pred CchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC-ChhHHHhhhCCC---CeEEeC--CccccceEEecCCC----
Q 011751 164 NSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCA---KAVHVQ--GRQFPVEILYTLYP---- 233 (478)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~-~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~---- 233 (478)
++.|..||..|++++.-++ .++++|++|||+ |..+|++|.|.. .+..+. .+++|++.+.....
T Consensus 414 ---YiND~eRGvVWEEViIMlP----~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~k 486 (1248)
T KOG0947|consen 414 ---YINDVERGVVWEEVIIMLP----RHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFK 486 (1248)
T ss_pred ---ecccccccccceeeeeecc----ccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceeh
Confidence 8999999999999999999 789999999999 999999999854 233333 44455543321110
Q ss_pred ----CcchH------------------------------------------------------H--HHHHHHHHhhhcCC
Q 011751 234 ----EPDYL------------------------------------------------------D--ATLITIFQVHLDEA 253 (478)
Q Consensus 234 ----~~~~~------------------------------------------------------~--~~~~~~~~~~~~~~ 253 (478)
...++ . .....++.......
T Consensus 487 iidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~ 566 (1248)
T KOG0947|consen 487 IIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKN 566 (1248)
T ss_pred hhcccchhhhhcchhhhhhhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcc
Confidence 00000 0 00111122223334
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHh------------------cCC---CCCC---------CeEEEEccCCCCHHHHH
Q 011751 254 PGDILVFLTGQEEIESVERLVQERLL------------------QLP---EASR---------KLVTVPIFSSLPSEQQM 303 (478)
Q Consensus 254 ~~~~LVF~~s~~~~~~l~~~l~~~~~------------------~~~---~~~~---------~~~v~~~h~~l~~~~r~ 303 (478)
--|++|||=+++.|++.++.|...-. .+. .+.+ .-.++.+|||+-+--++
T Consensus 567 lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE 646 (1248)
T KOG0947|consen 567 LLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKE 646 (1248)
T ss_pred cCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHH
Confidence 56899999999999999999865311 111 1111 12577789999999999
Q ss_pred hhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC---CCeE
Q 011751 304 RVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKC 380 (478)
Q Consensus 304 ~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~---~G~~ 380 (478)
-++..|..|-+|||+||.++++|||+|+.++|++ ....+|.... .-..+-+|.||+|||||.| .|.+
T Consensus 647 ~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~----Sl~KhDG~ef------R~L~PGEytQMAGRAGRRGlD~tGTV 716 (1248)
T KOG0947|consen 647 VVELLFQRGLVKVLFATETFAMGVNMPARTVVFS----SLRKHDGNEF------RELLPGEYTQMAGRAGRRGLDETGTV 716 (1248)
T ss_pred HHHHHHhcCceEEEeehhhhhhhcCCCceeEEee----ehhhccCcce------eecCChhHHhhhccccccccCcCceE
Confidence 9999999999999999999999999999999997 3344553322 3467889999999999999 7999
Q ss_pred EEecCHh
Q 011751 381 FRLYPEN 387 (478)
Q Consensus 381 ~~l~~~~ 387 (478)
+.+....
T Consensus 717 ii~~~~~ 723 (1248)
T KOG0947|consen 717 IIMCKDS 723 (1248)
T ss_pred EEEecCC
Confidence 8888544
No 58
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1.8e-32 Score=286.86 Aligned_cols=299 Identities=18% Similarity=0.215 Sum_probs=198.0
Q ss_pred hhcCCcHHHHHHHHHHHhcC------CEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHh
Q 011751 10 RKSLPIASVEKRLVEEVRKN------DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (478)
Q Consensus 10 ~~~~~~~~~q~~~~~~l~~~------~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (478)
...|.+++.|+++++.+..+ .+.+++||||||||.++...++.... .+..++++.|+++|+.|..+.+.+.+
T Consensus 231 ~lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~--~g~qvlilaPT~~LA~Q~~~~~~~l~ 308 (630)
T TIGR00643 231 SLPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE--AGYQVALMAPTEILAEQHYNSLRNLL 308 (630)
T ss_pred hCCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH--cCCcEEEECCHHHHHHHHHHHHHHHh
Confidence 44567899999999999876 36899999999999766555544322 35679999999999999999887765
Q ss_pred CCcCCCEEEEEEeecccCChhhhHH---------------HHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhh
Q 011751 84 GVELGQRVGYSIRFDDRTSTSTRIK---------------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (478)
Q Consensus 84 ~~~~~~~vg~~~~~~~~~~~~~~~~---------------~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~ 148 (478)
.. .+..++...+..........+. .+.....+.+++++||||+|....... ..+.
T Consensus 309 ~~-~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVIDEaH~fg~~qr---~~l~------ 378 (630)
T TIGR00643 309 AP-LGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVIIDEQHRFGVEQR---KKLR------ 378 (630)
T ss_pred cc-cCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEEEechhhccHHHH---HHHH------
Confidence 42 3444443322211100000111 111123467899999999995332110 0000
Q ss_pred cccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChhHHHh-hhCCCCeEEeC---Ccccc
Q 011751 149 SKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSE-YFGCAKAVHVQ---GRQFP 224 (478)
Q Consensus 149 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~-~~~~~~~~~~~---~~~~~ 224 (478)
+.... ...+++++||||+.+..++. .++......+. ....|
T Consensus 379 ---------------------~~~~~--------------~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r~~ 423 (630)
T TIGR00643 379 ---------------------EKGQG--------------GFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGRKP 423 (630)
T ss_pred ---------------------Hhccc--------------CCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCCCc
Confidence 00000 02468999999996665542 22322222221 22234
Q ss_pred ceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCH--------HHHHHHHHHHHHHHhcCCCCCCCeEEEEccCC
Q 011751 225 VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQ--------EEIESVERLVQERLLQLPEASRKLVTVPIFSS 296 (478)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~--------~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~ 296 (478)
+...+..... .+..+..+.... ..+.+++||||.. ..++.+++.|.+.+ .++.+..+||+
T Consensus 424 i~~~~~~~~~---~~~~~~~i~~~l--~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~-------~~~~v~~lHG~ 491 (630)
T TIGR00643 424 ITTVLIKHDE---KDIVYEFIEEEI--AKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAF-------PKYNVGLLHGR 491 (630)
T ss_pred eEEEEeCcch---HHHHHHHHHHHH--HhCCcEEEEEccccccccchHHHHHHHHHHHHhhC-------CCCcEEEEeCC
Confidence 4444433221 223333332222 2477899999976 34556666666543 26789999999
Q ss_pred CCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC
Q 011751 297 LPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG 376 (478)
Q Consensus 297 l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~ 376 (478)
|++++|..+++.|++|+.+|||||+++++|||+|++++||+ ||+. ..+.+++.||+|||||.|
T Consensus 492 m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi--------~~~~---------r~gls~lhQ~~GRvGR~g 554 (630)
T TIGR00643 492 MKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVI--------EDAE---------RFGLSQLHQLRGRVGRGD 554 (630)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEE--------eCCC---------cCCHHHHHHHhhhcccCC
Confidence 99999999999999999999999999999999999999998 6632 135678999999999999
Q ss_pred -CCeEEEec
Q 011751 377 -PGKCFRLY 384 (478)
Q Consensus 377 -~G~~~~l~ 384 (478)
+|.|+.++
T Consensus 555 ~~g~~il~~ 563 (630)
T TIGR00643 555 HQSYCLLVY 563 (630)
T ss_pred CCcEEEEEE
Confidence 99999998
No 59
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=8e-33 Score=301.05 Aligned_cols=299 Identities=18% Similarity=0.190 Sum_probs=201.6
Q ss_pred HHhhhcCCcHHHHHHHHHHHhcC------CEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHH
Q 011751 7 LQQRKSLPIASVEKRLVEEVRKN------DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVA 80 (478)
Q Consensus 7 ~~~~~~~~~~~~q~~~~~~l~~~------~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~ 80 (478)
......|.+++.|.++++.+..+ .+++++||||||||.++..++.... ..+..+++++|+++++.|+.+.+.
T Consensus 593 ~~~~~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~--~~g~qvlvLvPT~eLA~Q~~~~f~ 670 (1147)
T PRK10689 593 FCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV--ENHKQVAVLVPTTLLAQQHYDNFR 670 (1147)
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHH--HcCCeEEEEeCcHHHHHHHHHHHH
Confidence 34455667899999999999987 8999999999999966544443332 236689999999999999999887
Q ss_pred HHhCCcCCCEEEEEEeecccCChhhhHH--------------HHhh-CcCcCCCcceEeecccccchhhhHHHHHHHHHH
Q 011751 81 EESGVELGQRVGYSIRFDDRTSTSTRIK--------------EALL-DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQ 145 (478)
Q Consensus 81 ~~~~~~~~~~vg~~~~~~~~~~~~~~~~--------------~~l~-~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~ 145 (478)
+.+.. .+..++...++.+.......+. .++. +..+.+++++||||+|...... ++
T Consensus 671 ~~~~~-~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLVIDEahrfG~~~-------~e-- 740 (1147)
T PRK10689 671 DRFAN-WPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIVDEEHRFGVRH-------KE-- 740 (1147)
T ss_pred Hhhcc-CCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEEEechhhcchhH-------HH--
Confidence 65542 2334433222211100000000 2222 2346789999999999532211 00
Q ss_pred HhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChhHHH---hhhCCCCeEEeCCc-
Q 011751 146 NARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFS---EYFGCAKAVHVQGR- 221 (478)
Q Consensus 146 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~---~~~~~~~~~~~~~~- 221 (478)
.+..++ .+.++++||||+.++.+. ..+.+...+..+..
T Consensus 741 ----------------------------------~lk~l~----~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~ 782 (1147)
T PRK10689 741 ----------------------------------RIKAMR----ADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR 782 (1147)
T ss_pred ----------------------------------HHHhcC----CCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC
Confidence 111111 578999999998555433 22233333333221
Q ss_pred cccceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHH
Q 011751 222 QFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQ 301 (478)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~ 301 (478)
..++........... ....+.... ..+++++||||+.+.++.+++.|.+.+. +..+..+||+|++++
T Consensus 783 r~~v~~~~~~~~~~~----~k~~il~el--~r~gqv~vf~n~i~~ie~la~~L~~~~p-------~~~v~~lHG~m~q~e 849 (1147)
T PRK10689 783 RLAVKTFVREYDSLV----VREAILREI--LRGGQVYYLYNDVENIQKAAERLAELVP-------EARIAIGHGQMRERE 849 (1147)
T ss_pred CCCceEEEEecCcHH----HHHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHHhCC-------CCcEEEEeCCCCHHH
Confidence 234443333221111 111222222 2368999999999999999999987632 567888999999999
Q ss_pred HHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeE
Q 011751 302 QMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKC 380 (478)
Q Consensus 302 r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~ 380 (478)
|.+++..|++|+.+|||||+++++|+|+|++++||. +++. ..+.++|+||+||+||.+ .|.|
T Consensus 850 Re~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi--------~~ad---------~fglaq~~Qr~GRvGR~g~~g~a 912 (1147)
T PRK10689 850 LERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII--------ERAD---------HFGLAQLHQLRGRVGRSHHQAYA 912 (1147)
T ss_pred HHHHHHHHHhcCCCEEEECchhhcccccccCCEEEE--------ecCC---------CCCHHHHHHHhhccCCCCCceEE
Confidence 999999999999999999999999999999999994 2211 123467999999999999 9999
Q ss_pred EEecC
Q 011751 381 FRLYP 385 (478)
Q Consensus 381 ~~l~~ 385 (478)
|.+++
T Consensus 913 ~ll~~ 917 (1147)
T PRK10689 913 WLLTP 917 (1147)
T ss_pred EEEeC
Confidence 99985
No 60
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.4e-33 Score=277.57 Aligned_cols=320 Identities=18% Similarity=0.225 Sum_probs=240.2
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEE
Q 011751 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRV 91 (478)
Q Consensus 12 ~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~v 91 (478)
.|.+.++|..++..+..+++++|+|.|.+|||.++..+++..... +.+++++.|.++|.+|-++.+..+++ ++|.-.
T Consensus 127 PF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~--kQRVIYTSPIKALSNQKYREl~~EF~-DVGLMT 203 (1041)
T KOG0948|consen 127 PFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE--KQRVIYTSPIKALSNQKYRELLEEFK-DVGLMT 203 (1041)
T ss_pred CcccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh--cCeEEeeChhhhhcchhHHHHHHHhc-ccceee
Confidence 455789999999999999999999999999998888888776543 66899999999999999999999887 456555
Q ss_pred EEEEeecccC----ChhhhHHHHhhC--cCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccCCCCCCCCCCCc
Q 011751 92 GYSIRFDDRT----STSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENS 165 (478)
Q Consensus 92 g~~~~~~~~~----~~~~~~~~~l~~--~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~ 165 (478)
|-. ...... -+-+.++.++-. ..+..+.+||+||+|
T Consensus 204 GDV-TInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIH------------------------------------- 245 (1041)
T KOG0948|consen 204 GDV-TINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIH------------------------------------- 245 (1041)
T ss_pred cce-eeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeeh-------------------------------------
Confidence 522 222222 233344445433 458889999999999
Q ss_pred hhhhccCCCCCCccccccccCCCCCCceEEEEcCCC-ChhHHHhhhCC---C--CeEEeCCccccceEEecCC-------
Q 011751 166 DMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGC---A--KAVHVQGRQFPVEILYTLY------- 232 (478)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~-~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~------- 232 (478)
+|-|..||..|++.+..++ .+++.|++|||+ |+.+|++|... . .++..+-++-|+..+..+.
T Consensus 246 -YMRDkERGVVWEETIIllP----~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlyl 320 (1041)
T KOG0948|consen 246 -YMRDKERGVVWEETIILLP----DNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYL 320 (1041)
T ss_pred -hccccccceeeeeeEEecc----ccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEE
Confidence 8999999999999999998 789999999999 99999999842 2 3444445555554442221
Q ss_pred ---CCcchHHH----HHH----------------------------------HHHHhhhcCCCCCEEEEcCCHHHHHHHH
Q 011751 233 ---PEPDYLDA----TLI----------------------------------TIFQVHLDEAPGDILVFLTGQEEIESVE 271 (478)
Q Consensus 233 ---~~~~~~~~----~~~----------------------------------~~~~~~~~~~~~~~LVF~~s~~~~~~l~ 271 (478)
...++.+. +.. .+..........++|||+=++++|+..|
T Consensus 321 vVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~A 400 (1041)
T KOG0948|consen 321 VVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYA 400 (1041)
T ss_pred EEecccccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHH
Confidence 11111111 111 1222222233568999999999999998
Q ss_pred HHHHHHHh------------------cCC---CCCC---------CeEEEEccCCCCHHHHHhhcCcCCCCccEEEEecc
Q 011751 272 RLVQERLL------------------QLP---EASR---------KLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN 321 (478)
Q Consensus 272 ~~l~~~~~------------------~~~---~~~~---------~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~ 321 (478)
-.+.+..- .++ ...+ .-.+..+||||-+--++-|+-.|.+|-+|+|+||.
T Consensus 401 lqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATE 480 (1041)
T KOG0948|consen 401 LQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATE 480 (1041)
T ss_pred HhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhh
Confidence 87765311 011 1111 11466679999999999999999999999999999
Q ss_pred ccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC---CCeEEEecCHh
Q 011751 322 IAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPEN 387 (478)
Q Consensus 322 ~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~ 387 (478)
+++.|+|+|+-++|+- ..+.||... -.|+|--+|+||+|||||.| .|.|+.++++.
T Consensus 481 TFsiGLNMPAkTVvFT----~~rKfDG~~------fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 481 TFSIGLNMPAKTVVFT----AVRKFDGKK------FRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred hhhhccCCcceeEEEe----eccccCCcc------eeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 9999999999999985 566677543 36999999999999999999 89999999654
No 61
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=7.4e-32 Score=279.76 Aligned_cols=299 Identities=16% Similarity=0.157 Sum_probs=183.1
Q ss_pred HHHhhhcCCcHHHHHHHHHHHhcCC-EEEEEcCCCCcHHhHHHHHHhhcCccC-CCcEEEEecchHHHHHHHHHHHHHHh
Q 011751 6 ILQQRKSLPIASVEKRLVEEVRKND-ILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPRRVAAVTVAKRVAEES 83 (478)
Q Consensus 6 ~~~~~~~~~~~~~q~~~~~~l~~~~-~~~i~apTGsGKT~~~~~~~~~~~~~~-~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (478)
..+.-..|.++++|+++++.+..|+ ++++.+|||||||..+..+++...... ...++++++|+|+++.|+.+.+.+..
T Consensus 7 ff~~~~G~~PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~ 86 (844)
T TIGR02621 7 WYQGLHGYSPFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIG 86 (844)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHH
Confidence 3344446779999999999999998 577789999999965443333221111 23467778899999999988765443
Q ss_pred CCc----------------------CCCEEEEEEeecccCChhhhH----------HHHhhC-c----------------
Q 011751 84 GVE----------------------LGQRVGYSIRFDDRTSTSTRI----------KEALLD-P---------------- 114 (478)
Q Consensus 84 ~~~----------------------~~~~vg~~~~~~~~~~~~~~~----------~~~l~~-~---------------- 114 (478)
... ....+....++.........+ ..++.. .
T Consensus 87 k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~a 166 (844)
T TIGR02621 87 ERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHA 166 (844)
T ss_pred HHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchh
Confidence 211 012222222221110000000 011111 1
Q ss_pred -CcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCce
Q 011751 115 -YLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLK 193 (478)
Q Consensus 115 -~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (478)
.+.+++++|+||||......+.+..+++.+. + + ....+.|
T Consensus 167 g~L~~v~~LVLDEADLd~gF~~~l~~Il~~l~--r------------------------------------p-~~~rprQ 207 (844)
T TIGR02621 167 GFLGQDALIVHDEAHLEPAFQELLKQIMNEQQ--R------------------------------------P-PDFLPLR 207 (844)
T ss_pred hhhccceEEEEehhhhccccHHHHHHHHHhcc--c------------------------------------C-cccccce
Confidence 2688999999999954433333333332210 0 0 0002369
Q ss_pred EEEEcCCCCh--hHHHhhhC-CCCeEEeCCccccc-e-EEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHH
Q 011751 194 LIIMSASLDA--RGFSEYFG-CAKAVHVQGRQFPV-E-ILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIE 268 (478)
Q Consensus 194 ~i~lSAT~~~--~~~~~~~~-~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~ 268 (478)
+++||||++. ..+...+. +...+.+....... + ..+............+..+.... ...++++||||||+++++
T Consensus 208 tLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~v~v~~e~Kl~~lv~~L~~ll-~e~g~~vLVF~NTv~~Aq 286 (844)
T TIGR02621 208 VVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKLVPPSDEKFLSTMVKELNLLM-KDSGGAILVFCRTVKHVR 286 (844)
T ss_pred EEEEecCCCccHHHHHHHHccCCceeecccccccccceEEEEecChHHHHHHHHHHHHHHH-hhCCCcEEEEECCHHHHH
Confidence 9999999943 34444443 22222222211111 1 12222222222223333333322 245788999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHH-----hhcCcCCC----Cc-------cEEEEeccccccccccCCe
Q 011751 269 SVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQM-----RVFAPAAA----GF-------RKVILATNIAETSVTIPGI 332 (478)
Q Consensus 269 ~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~-----~i~~~f~~----g~-------~~vlvaT~~~~~Gvdip~v 332 (478)
.+++.|.+. ++ ..+||+|++.+|. .+++.|++ |. .+|||||+++|+|+||+.
T Consensus 287 ~L~~~L~~~---------g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~- 354 (844)
T TIGR02621 287 KVFAKLPKE---------KF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA- 354 (844)
T ss_pred HHHHHHHhc---------CC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-
Confidence 999999864 43 7889999999999 77888876 43 689999999999999987
Q ss_pred EEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC
Q 011751 333 KYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG 376 (478)
Q Consensus 333 ~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~ 376 (478)
++||+ ++ .+.++|+||+||+||.|
T Consensus 355 d~VI~--------d~------------aP~esyIQRiGRtgR~G 378 (844)
T TIGR02621 355 DHLVC--------DL------------APFESMQQRFGRVNRFG 378 (844)
T ss_pred ceEEE--------CC------------CCHHHHHHHhcccCCCC
Confidence 77775 32 33689999999999998
No 62
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.5e-33 Score=262.33 Aligned_cols=305 Identities=20% Similarity=0.264 Sum_probs=227.7
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCc------cCCCcEEEEecchHHHHHHHHHHHHHHhCC
Q 011751 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF------CRDGKLIGVTQPRRVAAVTVAKRVAEESGV 85 (478)
Q Consensus 12 ~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~------~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~ 85 (478)
...++++|.++++....|++++-+|.||||||..+...+..+.+ ..++...++++|+|+++.|+...-.+ ++.
T Consensus 243 y~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKk-f~K 321 (731)
T KOG0339|consen 243 YEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKK-FGK 321 (731)
T ss_pred cccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHH-hhh
Confidence 34688999999999999999999999999999555444433222 23577899999999999998775433 332
Q ss_pred cCCCEEEEEEee--------------cccCChhhhHHHHhh--CcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhc
Q 011751 86 ELGQRVGYSIRF--------------DDRTSTSTRIKEALL--DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARS 149 (478)
Q Consensus 86 ~~~~~vg~~~~~--------------~~~~~~~~~~~~~l~--~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~ 149 (478)
..+..+-...++ +..+.+..++..+.. ...+++++++|+||+
T Consensus 322 ~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEa---------------------- 379 (731)
T KOG0339|consen 322 AYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEA---------------------- 379 (731)
T ss_pred hccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEech----------------------
Confidence 223322211111 112334445544432 357899999999999
Q ss_pred ccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC--ChhHHHh-hhCCCCeEEeCCc----c
Q 011751 150 KSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSE-YFGCAKAVHVQGR----Q 222 (478)
Q Consensus 150 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~--~~~~~~~-~~~~~~~~~~~~~----~ 222 (478)
|+|++++|..++.++-.++. ++.|.+++|||+ ..+.+++ +++++ +-.+.+. .
T Consensus 380 ----------------drmfdmGfe~qVrSI~~hir----pdrQtllFsaTf~~kIe~lard~L~dp-VrvVqg~vgean 438 (731)
T KOG0339|consen 380 ----------------DRMFDMGFEPQVRSIKQHIR----PDRQTLLFSATFKKKIEKLARDILSDP-VRVVQGEVGEAN 438 (731)
T ss_pred ----------------hhhhccccHHHHHHHHhhcC----CcceEEEeeccchHHHHHHHHHHhcCC-eeEEEeehhccc
Confidence 59999999999988888887 899999999999 6677764 55543 3333221 1
Q ss_pred ccceEEecCCCC-cchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHH
Q 011751 223 FPVEILYTLYPE-PDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQ 301 (478)
Q Consensus 223 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~ 301 (478)
..+.......+. ...+.- .+.++......|++|+|+..+.++++++..|.-. ++.+..+||++.+.+
T Consensus 439 ~dITQ~V~V~~s~~~Kl~w---l~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk---------~~~v~llhgdkdqa~ 506 (731)
T KOG0339|consen 439 EDITQTVSVCPSEEKKLNW---LLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLK---------GFNVSLLHGDKDQAE 506 (731)
T ss_pred cchhheeeeccCcHHHHHH---HHHHhhhhccCCcEEEEEeccCCHHHHHHHhccc---------cceeeeecCchhhHH
Confidence 222222222222 112221 2233334455789999999999999999998765 899999999999999
Q ss_pred HHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeE
Q 011751 302 QMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKC 380 (478)
Q Consensus 302 r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~ 380 (478)
|.+++..|+.+...|+|+||++++|+|||+++.||+ || ...+.+.|.||+||+||.| .|.+
T Consensus 507 rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvn--------yD----------~ardIdththrigrtgRag~kGva 568 (731)
T KOG0339|consen 507 RNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVN--------YD----------FARDIDTHTHRIGRTGRAGEKGVA 568 (731)
T ss_pred HHHHHHHHhhcCCceEEEeeHhhcCCCccccceeec--------cc----------ccchhHHHHHHhhhccccccccee
Confidence 999999999999999999999999999999999999 88 5678899999999999999 9999
Q ss_pred EEecCHhhHh
Q 011751 381 FRLYPENEFD 390 (478)
Q Consensus 381 ~~l~~~~~~~ 390 (478)
|.|+++.+-+
T Consensus 569 yTlvTeKDa~ 578 (731)
T KOG0339|consen 569 YTLVTEKDAE 578 (731)
T ss_pred eEEechhhHH
Confidence 9999987655
No 63
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.5e-35 Score=278.96 Aligned_cols=319 Identities=20% Similarity=0.273 Sum_probs=225.4
Q ss_pred CchhHHHhhhcCCcHHHHHHHHHHHhcC-CEEEEEcCCCCcHHhHHHHHHhhcC---------c---cCC--CcEEEEec
Q 011751 2 PRQKILQQRKSLPIASVEKRLVEEVRKN-DILIIVGETGSGKTTQLPQFLFHAG---------F---CRD--GKLIGVTQ 66 (478)
Q Consensus 2 ~~~~~~~~~~~~~~~~~q~~~~~~l~~~-~~~~i~apTGsGKT~~~~~~~~~~~---------~---~~~--~~~i~~~~ 66 (478)
++++.+...++..++++|.-.+++...| .+++-.|.||||||..+...+.... . ... ....+++.
T Consensus 191 ~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~t 270 (731)
T KOG0347|consen 191 EILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVT 270 (731)
T ss_pred HHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEec
Confidence 4667788888889999999999999998 7899999999999966555554411 1 111 22489999
Q ss_pred chHHHHHHHHHHHHHHhC---CcCCCEEEEE----------EeecccCChhhhHHHHhhC-----cCcCCCcceEeeccc
Q 011751 67 PRRVAAVTVAKRVAEESG---VELGQRVGYS----------IRFDDRTSTSTRIKEALLD-----PYLSRYSAIIVDEAH 128 (478)
Q Consensus 67 p~~~l~~~~~~~~~~~~~---~~~~~~vg~~----------~~~~~~~~~~~~~~~~l~~-----~~l~~~~~lIiDE~H 128 (478)
|||+|+.|+.+.+..... ..+...+|.. -..+..+.+..++.+++.. ..+.+++|+|+||+
T Consensus 271 PTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEa- 349 (731)
T KOG0347|consen 271 PTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEA- 349 (731)
T ss_pred ChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccH-
Confidence 999999999887654433 2222223311 0123334556666665543 34789999999999
Q ss_pred ccchhhhHHHHHHHHHHHhhcccccCCCCCCCCCCCchhhhccCCCCCCcccccccc-CCCCCCceEEEEcCCCChhHHH
Q 011751 129 ERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQ-GRKFAPLKLIIMSASLDARGFS 207 (478)
Q Consensus 129 ~r~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~lSAT~~~~~~~ 207 (478)
|+|+..++...+..+++.+. +..+...|.+.+|||+......
T Consensus 350 -------------------------------------DRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~ 392 (731)
T KOG0347|consen 350 -------------------------------------DRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQ 392 (731)
T ss_pred -------------------------------------HHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcC
Confidence 57777777777777777776 3445778999999999432211
Q ss_pred ---hhhCC-CC-------------eEEeCCccccceEEecCCCCcchHHHHHHHHHHh-----------hhcCCCCCEEE
Q 011751 208 ---EYFGC-AK-------------AVHVQGRQFPVEILYTLYPEPDYLDATLITIFQV-----------HLDEAPGDILV 259 (478)
Q Consensus 208 ---~~~~~-~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~LV 259 (478)
.--.+ .. .+.+.+.+ .+... .+............+.+ +...-+|++||
T Consensus 393 ~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kp---kiiD~-t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlV 468 (731)
T KOG0347|consen 393 PLSSSRKKKDKEDELNAKIQHLMKKIGFRGKP---KIIDL-TPQSATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLV 468 (731)
T ss_pred hhHHhhhccchhhhhhHHHHHHHHHhCccCCC---eeEec-CcchhHHHHHHHHhhcCCccccceeEEEEEeecCCceEE
Confidence 10000 00 00111111 11110 11111111111111111 12234899999
Q ss_pred EcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCC
Q 011751 260 FLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPG 339 (478)
Q Consensus 260 F~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g 339 (478)
|||+...+..++-.|... ++..+++|+.|.+.+|.+-++.|++..-.||||||++++|+|||+|.+|||
T Consensus 469 F~NsId~vKRLt~~L~~L---------~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIH-- 537 (731)
T KOG0347|consen 469 FCNSIDCVKRLTVLLNNL---------DIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIH-- 537 (731)
T ss_pred EechHHHHHHHHHHHhhc---------CCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEE--
Confidence 999999999999999876 888999999999999999999999999999999999999999999999999
Q ss_pred cccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEEecCHhhH
Q 011751 340 FVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENEF 389 (478)
Q Consensus 340 ~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 389 (478)
|. .|.+.+.|+||.||+.|++ .|..+.|+.+.+.
T Consensus 538 ------Yq----------VPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~ 572 (731)
T KOG0347|consen 538 ------YQ----------VPRTSEIYVHRSGRTARANSEGVSVMLCGPQEV 572 (731)
T ss_pred ------ee----------cCCccceeEecccccccccCCCeEEEEeChHHh
Confidence 77 6889999999999999999 9999999976653
No 64
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.8e-31 Score=254.52 Aligned_cols=310 Identities=17% Similarity=0.182 Sum_probs=208.1
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEE
Q 011751 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRV 91 (478)
Q Consensus 12 ~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~v 91 (478)
.+..+.||..+......+ |++++.|||=|||+++...+.......++ ++++++||+-|+.|.++.+.+..+.+....+
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~ 90 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGG-KVLFLAPTKPLVLQHAEFCRKVTGIPEDEIA 90 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCC-eEEEecCCchHHHHHHHHHHHHhCCChhhee
Confidence 346778999998888777 89999999999998887777765544445 8999999999999999999999998766555
Q ss_pred EEEEeecccCChhhhHHHHh-----------------h-CcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhccccc
Q 011751 92 GYSIRFDDRTSTSTRIKEAL-----------------L-DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSAD 153 (478)
Q Consensus 92 g~~~~~~~~~~~~~~~~~~l-----------------~-~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~ 153 (478)
. +.+.+.+.++...|. . ...+.++.++|+||||- ..-....--+.+.+....
T Consensus 91 ~----ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHR-AvGnyAYv~Va~~y~~~~----- 160 (542)
T COG1111 91 A----LTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHR-AVGNYAYVFVAKEYLRSA----- 160 (542)
T ss_pred e----ecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhh-ccCcchHHHHHHHHHHhc-----
Confidence 4 334445544444332 1 13477899999999993 221111112222222221
Q ss_pred CCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC--ChhHHHhhhCCC---CeEEe-CCcc-----
Q 011751 154 GHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSEYFGCA---KAVHV-QGRQ----- 222 (478)
Q Consensus 154 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~--~~~~~~~~~~~~---~~~~~-~~~~----- 222 (478)
.++.+++||||+ +.+.+.+...+- .+..- +.+.
T Consensus 161 ------------------------------------k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Y 204 (542)
T COG1111 161 ------------------------------------KNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPY 204 (542)
T ss_pred ------------------------------------cCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHh
Confidence 677899999999 777776654332 11111 0000
Q ss_pred -ccceEEecCCC------------------------------------------------------Ccc-----------
Q 011751 223 -FPVEILYTLYP------------------------------------------------------EPD----------- 236 (478)
Q Consensus 223 -~~~~~~~~~~~------------------------------------------------------~~~----------- 236 (478)
..+++.+.... ..+
T Consensus 205 v~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~ 284 (542)
T COG1111 205 VKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEA 284 (542)
T ss_pred hccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHH
Confidence 11111111110 000
Q ss_pred --------------------h--------------------------------------------HHHHHHHHHHhhhcC
Q 011751 237 --------------------Y--------------------------------------------LDATLITIFQVHLDE 252 (478)
Q Consensus 237 --------------------~--------------------------------------------~~~~~~~~~~~~~~~ 252 (478)
| ++.....+.......
T Consensus 285 ~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~ 364 (542)
T COG1111 285 IKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKN 364 (542)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcC
Confidence 0 000111111222234
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCe
Q 011751 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGI 332 (478)
Q Consensus 253 ~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v 332 (478)
+..++|||++.+..++.+...|.+........-.|-.......||++.+|.++++.|++|..+|||||+++|.|+|||++
T Consensus 365 ~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~v 444 (542)
T COG1111 365 GDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEV 444 (542)
T ss_pred CCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcc
Confidence 46789999999999999999998763211000000000112368999999999999999999999999999999999999
Q ss_pred EEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCCCCeEEEecCHh
Q 011751 333 KYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPEN 387 (478)
Q Consensus 333 ~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~ 387 (478)
+.||- ||| -.|..-++||.||+||...|.+|.|++++
T Consensus 445 DlVif--------YEp----------vpSeIR~IQR~GRTGR~r~Grv~vLvt~g 481 (542)
T COG1111 445 DLVIF--------YEP----------VPSEIRSIQRKGRTGRKRKGRVVVLVTEG 481 (542)
T ss_pred cEEEE--------ecC----------CcHHHHHHHhhCccccCCCCeEEEEEecC
Confidence 99998 884 46788899999999999999999999766
No 65
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-32 Score=258.21 Aligned_cols=339 Identities=18% Similarity=0.258 Sum_probs=224.9
Q ss_pred HHhhhcCCcHHHHHHHHHHHh---------cCCEEEEEcCCCCcHH--hHHHHHHhhcCccCCCcEEEEecchHHHHHHH
Q 011751 7 LQQRKSLPIASVEKRLVEEVR---------KNDILIIVGETGSGKT--TQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTV 75 (478)
Q Consensus 7 ~~~~~~~~~~~~q~~~~~~l~---------~~~~~~i~apTGsGKT--~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~ 75 (478)
+.+...-..+|+|..+++.+. ..++++|.|||||||| +.+|...+.....-+.-+++++.|++.++.|+
T Consensus 152 l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV 231 (620)
T KOG0350|consen 152 LVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQV 231 (620)
T ss_pred HHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHH
Confidence 344555567889999988873 2579999999999999 55555544433333456799999999999999
Q ss_pred HHHHHHHhCCcCCCEEEEEEee-------------------cccCChhhhHHHHhhC---cCcCCCcceEeecccc----
Q 011751 76 AKRVAEESGVELGQRVGYSIRF-------------------DDRTSTSTRIKEALLD---PYLSRYSAIIVDEAHE---- 129 (478)
Q Consensus 76 ~~~~~~~~~~~~~~~vg~~~~~-------------------~~~~~~~~~~~~~l~~---~~l~~~~~lIiDE~H~---- 129 (478)
++.+.+... ..|..|+..... +..+++..++...+++ ..+.+++++|||||+-
T Consensus 232 ~~~f~~~~~-~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~q 310 (620)
T KOG0350|consen 232 YDTFKRLNS-GTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQ 310 (620)
T ss_pred HHHHHHhcc-CCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHH
Confidence 998766544 234444432211 2234555666666653 3589999999999973
Q ss_pred -cchhhhHHHHHHHHHHHhhcccccCCCCCCCCCCCchhhhccCCCCCC---ccccccccCCCCCCceEEEEcCCC--Ch
Q 011751 130 -RTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNG---INTLKQCQGRKFAPLKLIIMSASL--DA 203 (478)
Q Consensus 130 -r~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~lSAT~--~~ 203 (478)
+--|.+.++..++ +..+-...+.+++..+...- .+++..+ ....++...+.+|||+ ++
T Consensus 311 sfQ~Wl~~v~~~~~---------------~~k~~~~~~nii~~~~~~~pt~~~e~~t~~-~~~~~~l~kL~~satLsqdP 374 (620)
T KOG0350|consen 311 SFQEWLDTVMSLCK---------------TMKRVACLDNIIRQRQAPQPTVLSELLTKL-GKLYPPLWKLVFSATLSQDP 374 (620)
T ss_pred HHHHHHHHHHHHhC---------------CchhhcChhhhhhhcccCCchhhHHHHhhc-CCcCchhHhhhcchhhhcCh
Confidence 1122222222221 11122223445544432221 1112221 1223666788999999 88
Q ss_pred hHHHhhhCCCC-eEEeCCc---cc--cceEEec-CCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHH
Q 011751 204 RGFSEYFGCAK-AVHVQGR---QF--PVEILYT-LYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQE 276 (478)
Q Consensus 204 ~~~~~~~~~~~-~~~~~~~---~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~ 276 (478)
..+.++--..| .+.+... .+ |-.+... ...+..+.. ..++......+..++|+|+++.+.+..++..|.=
T Consensus 375 ~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kp---l~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v 451 (620)
T KOG0350|consen 375 SKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKP---LAVYALITSNKLNRTLCFVNSVSSANRLAHVLKV 451 (620)
T ss_pred HHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccch---HhHHHHHHHhhcceEEEEecchHHHHHHHHHHHH
Confidence 88887654444 4444321 11 1111100 001111111 1233333444577899999999999999999984
Q ss_pred HHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccce
Q 011751 277 RLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLL 356 (478)
Q Consensus 277 ~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~ 356 (478)
.+.+. ...+-.+.|+++...|.+.++.|..|.++||||||+++||+|+.+|++||| ||
T Consensus 452 ~~~~~-----~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VIN--------Yd--------- 509 (620)
T KOG0350|consen 452 EFCSD-----NFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVIN--------YD--------- 509 (620)
T ss_pred Hhccc-----cchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEee--------cC---------
Confidence 44332 455666899999999999999999999999999999999999999999999 99
Q ss_pred eeecCHHHHHHhhcccCCCC-CCeEEEecCHhh
Q 011751 357 VVPISKAQALQRSGRAGREG-PGKCFRLYPENE 388 (478)
Q Consensus 357 ~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 388 (478)
.|.+..+|+||+||++|+| .|.||.+.++.+
T Consensus 510 -~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~ 541 (620)
T KOG0350|consen 510 -PPASDKTYVHRAGRTARAGQDGYAITLLDKHE 541 (620)
T ss_pred -CCchhhHHHHhhcccccccCCceEEEeecccc
Confidence 5899999999999999999 999999997664
No 66
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=1.4e-31 Score=264.23 Aligned_cols=283 Identities=18% Similarity=0.180 Sum_probs=176.5
Q ss_pred EEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEE------e--------
Q 011751 31 ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSI------R-------- 96 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~------~-------- 96 (478)
+++|+||||||||.++..+++.......+.+++++.|+++++.++.+++...++...+...+... .
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 47899999999998888888765433446689999999999999999998877643321111000 0
Q ss_pred --------------ecccCChhhhHHHHhhC-c-------CcCCCcceEeecccccchhhh-HHHHHHHHHHHhhccccc
Q 011751 97 --------------FDDRTSTSTRIKEALLD-P-------YLSRYSAIIVDEAHERTVHTD-VLLGLLKKVQNARSKSAD 153 (478)
Q Consensus 97 --------------~~~~~~~~~~~~~~l~~-~-------~l~~~~~lIiDE~H~r~~~~~-~~l~~l~~~~~~~~~~~~ 153 (478)
......+...+...+.. . ..-..+++|+||+|....... .+..+++.+. .
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~--~----- 153 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLK--D----- 153 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHH--H-----
Confidence 00001111111111111 0 011237899999997554322 2222232221 1
Q ss_pred CCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChhHHHhhhCCCCeEEeCC--cccc---ceEE
Q 011751 154 GHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQG--RQFP---VEIL 228 (478)
Q Consensus 154 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~ 228 (478)
.+.|+++||||++ +.+.+|+.......... ...+ ...+
T Consensus 154 ------------------------------------~~~~~i~~SATlp-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (358)
T TIGR01587 154 ------------------------------------NDVPILLMSATLP-KFLKEYAEKIGYVEFNEPLDLKEERRFERH 196 (358)
T ss_pred ------------------------------------cCCCEEEEecCch-HHHHHHHhcCCCcccccCCCCccccccccc
Confidence 4578999999996 44555553321110000 0000 0001
Q ss_pred ec--CCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhh-
Q 011751 229 YT--LYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRV- 305 (478)
Q Consensus 229 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i- 305 (478)
.. ...........+..+.... ..++++||||+|+++++.+++.|.+... ...+..+||++++.+|..+
T Consensus 197 ~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lVf~~t~~~~~~~~~~L~~~~~-------~~~~~~~h~~~~~~~r~~~~ 267 (358)
T TIGR01587 197 RFIKIESDKVGEISSLERLLEFI--KKGGKIAIIVNTVDRAQEFYQQLKENAP-------EEEIMLLHSRFTEKDRAKKE 267 (358)
T ss_pred cceeeccccccCHHHHHHHHHHh--hCCCeEEEEECCHHHHHHHHHHHHhhcC-------CCeEEEEECCCCHHHHHHHH
Confidence 00 0111111111222222222 3478999999999999999999987621 2368999999999999764
Q ss_pred ---cCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC--C---
Q 011751 306 ---FAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG--P--- 377 (478)
Q Consensus 306 ---~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~--~--- 377 (478)
++.|++|..+|||||+++++|+|+| +++||+ | +.+.++|+||+||+||.| .
T Consensus 268 ~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~--------~------------~~~~~~~iqr~GR~gR~g~~~~~~ 326 (358)
T TIGR01587 268 AELLEEMKKNEKFVIVATQVIEASLDIS-ADVMIT--------E------------LAPIDSLIQRLGRLHRYGRKNGEN 326 (358)
T ss_pred HHHHHHhcCCCCeEEEECcchhceeccC-CCEEEE--------c------------CCCHHHHHHHhccccCCCCCCCCC
Confidence 7899999999999999999999996 677776 3 345789999999999987 3
Q ss_pred CeEEEecCHh
Q 011751 378 GKCFRLYPEN 387 (478)
Q Consensus 378 G~~~~l~~~~ 387 (478)
|.+|.+....
T Consensus 327 ~~~~v~~~~~ 336 (358)
T TIGR01587 327 FEVYIITIAP 336 (358)
T ss_pred CeEEEEeecC
Confidence 3777777544
No 67
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-32 Score=266.91 Aligned_cols=312 Identities=20% Similarity=0.265 Sum_probs=213.8
Q ss_pred hhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--hHHHHHHhhcCcc----CCCcEEEEecchHHHHHHHHHHHHHHh
Q 011751 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGFC----RDGKLIGVTQPRRVAAVTVAKRVAEES 83 (478)
Q Consensus 10 ~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT--~~~~~~~~~~~~~----~~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (478)
..+-.+.+.|.++++.+..+++++.||||||||| +.+|.+....... ..|-+++++.|+++++.|.+....+..
T Consensus 154 ~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~ 233 (593)
T KOG0344|consen 154 LGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYS 233 (593)
T ss_pred CCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcC
Confidence 4445688999999999999999999999999999 4455444322222 236689999999999999999877655
Q ss_pred CC--cCCCEEEEEE--------------eecccCChhhhHHHHhhC----cCcCCCcceEeecccccchhhhHHHHHHHH
Q 011751 84 GV--ELGQRVGYSI--------------RFDDRTSTSTRIKEALLD----PYLSRYSAIIVDEAHERTVHTDVLLGLLKK 143 (478)
Q Consensus 84 ~~--~~~~~vg~~~--------------~~~~~~~~~~~~~~~l~~----~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~ 143 (478)
.. .-....+... ..+...+++.++...+.. ..++.+.++|+||++
T Consensus 234 ~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD--------------- 298 (593)
T KOG0344|consen 234 IDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEAD--------------- 298 (593)
T ss_pred CCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHH---------------
Confidence 11 1111111100 011112333344444433 258899999999995
Q ss_pred HHHhhcccccCCCCCCCCCCCchhhhcc-CCCCCCccccccccCCCCCCceEEEEcCCC--ChhHHHhhhCCCC-eEEeC
Q 011751 144 VQNARSKSADGHSNGNNNNENSDMILDR-GNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSEYFGCAK-AVHVQ 219 (478)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~--~~~~~~~~~~~~~-~~~~~ 219 (478)
++++. .+..++..++..+.. +++++-++|||. .++++++...... .+.+.
T Consensus 299 -----------------------~lfe~~~f~~Qla~I~sac~s---~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg 352 (593)
T KOG0344|consen 299 -----------------------LLFEPEFFVEQLADIYSACQS---PDIRVALFSATISVYVEEWAELIKSDLKRVIVG 352 (593)
T ss_pred -----------------------hhhChhhHHHHHHHHHHHhcC---cchhhhhhhccccHHHHHHHHHhhccceeEEEe
Confidence 33333 222333333333332 778888999999 6667765543322 22332
Q ss_pred Ccccc---ceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCC
Q 011751 220 GRQFP---VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSS 296 (478)
Q Consensus 220 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~ 296 (478)
.+... ++......... .-.+..+.......-..++|||+.+.+.+.++...|... .++.+..+||.
T Consensus 353 ~~~sa~~~V~QelvF~gse---~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~--------~~i~v~vIh~e 421 (593)
T KOG0344|consen 353 LRNSANETVDQELVFCGSE---KGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIY--------DNINVDVIHGE 421 (593)
T ss_pred cchhHhhhhhhhheeeecc---hhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhc--------cCcceeeEecc
Confidence 22111 11111111111 112223333333334678999999999999999888521 27889999999
Q ss_pred CCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC
Q 011751 297 LPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG 376 (478)
Q Consensus 297 l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~ 376 (478)
.++.+|+++++.|+.|++.|++||+++++|+|+-+++.||| || .|.|..+|+||+||+||+|
T Consensus 422 ~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VIn--------yD----------~p~s~~syihrIGRtgRag 483 (593)
T KOG0344|consen 422 RSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVIN--------YD----------FPQSDLSYIHRIGRTGRAG 483 (593)
T ss_pred cchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEe--------cC----------CCchhHHHHHHhhccCCCC
Confidence 99999999999999999999999999999999999999999 99 7999999999999999999
Q ss_pred -CCeEEEecCHhhHhc
Q 011751 377 -PGKCFRLYPENEFDK 391 (478)
Q Consensus 377 -~G~~~~l~~~~~~~~ 391 (478)
.|++|.+|+.++...
T Consensus 484 ~~g~Aitfytd~d~~~ 499 (593)
T KOG0344|consen 484 RSGKAITFYTDQDMPR 499 (593)
T ss_pred CCcceEEEeccccchh
Confidence 899999999865443
No 68
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.98 E-value=1.6e-31 Score=283.17 Aligned_cols=319 Identities=24% Similarity=0.244 Sum_probs=231.7
Q ss_pred HhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcC
Q 011751 8 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVEL 87 (478)
Q Consensus 8 ~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~ 87 (478)
..+....++++|.+++..+.+|++++|+.|||||||..+.+.+++.....+..+++++-|+++|++.+.+++.+......
T Consensus 64 ~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~ 143 (851)
T COG1205 64 VKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLP 143 (851)
T ss_pred HHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCC
Confidence 34555669999999999999999999999999999988888888888777777899999999999999999887765433
Q ss_pred CCEEEEEEeecccCChhhhHH-----------------H-HhhC-----cCcCCCcceEeecccccchhhhHHHHHHHHH
Q 011751 88 GQRVGYSIRFDDRTSTSTRIK-----------------E-ALLD-----PYLSRYSAIIVDEAHERTVHTDVLLGLLKKV 144 (478)
Q Consensus 88 ~~~vg~~~~~~~~~~~~~~~~-----------------~-~l~~-----~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~ 144 (478)
..+... .+++.+....+.. . ++.+ -.+.++++||+||+|
T Consensus 144 -~~v~~~-~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElH---------------- 205 (851)
T COG1205 144 -GKVTFG-RYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELH---------------- 205 (851)
T ss_pred -Ccceee-eecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecce----------------
Confidence 233221 3455555444421 1 1111 126789999999999
Q ss_pred HHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC-ChhHHH-hhhCCCCeEEeCCcc
Q 011751 145 QNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFS-EYFGCAKAVHVQGRQ 222 (478)
Q Consensus 145 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~-~~~~~~-~~~~~~~~~~~~~~~ 222 (478)
+|.|.+|++..+++.+ +.++.+....++|+|++|||+ |+.+++ ++++..-...+.+..
T Consensus 206 -----------tYrGv~GS~vA~llRR---------L~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g 265 (851)
T COG1205 206 -----------TYRGVQGSEVALLLRR---------LLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDG 265 (851)
T ss_pred -----------eccccchhHHHHHHHH---------HHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCCC
Confidence 8888888888887776 334444444789999999999 777766 455433222244433
Q ss_pred ccce--EEecCCC-Cc--------chHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEE
Q 011751 223 FPVE--ILYTLYP-EP--------DYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTV 291 (478)
Q Consensus 223 ~~~~--~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~ 291 (478)
.|-. ......| .. +.. .....+... ....+-++|||+.+++.++.++...++.+.... ......+.
T Consensus 266 ~~~~~~~~~~~~p~~~~~~~~~r~s~~-~~~~~~~~~-~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~-~~l~~~v~ 342 (851)
T COG1205 266 SPRGLRYFVRREPPIRELAESIRRSAL-AELATLAAL-LVRNGIQTLVFFRSRKQVELLYLSPRRRLVREG-GKLLDAVS 342 (851)
T ss_pred CCCCceEEEEeCCcchhhhhhcccchH-HHHHHHHHH-HHHcCceEEEEEehhhhhhhhhhchhHHHhhcc-hhhhhhee
Confidence 3322 2222222 00 111 111112211 123477899999999999999866666554433 23345788
Q ss_pred EccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeec-CHHHHHHhhc
Q 011751 292 PIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPI-SKAQALQRSG 370 (478)
Q Consensus 292 ~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~-s~~~~~Qr~G 370 (478)
.++|++..++|.+++..|+.|+..++++|++++.|+|+.+++.||.+|+ |. |..+++||+|
T Consensus 343 ~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~------------------P~~s~~~~~Q~~G 404 (851)
T COG1205 343 TYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGY------------------PGVSVLSFRQRAG 404 (851)
T ss_pred eccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCC------------------CCchHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999774 66 8899999999
Q ss_pred ccCCCC-CCeEEEecC
Q 011751 371 RAGREG-PGKCFRLYP 385 (478)
Q Consensus 371 RaGR~~-~G~~~~l~~ 385 (478)
||||.+ .+..+.++.
T Consensus 405 RaGR~~~~~l~~~v~~ 420 (851)
T COG1205 405 RAGRRGQESLVLVVLR 420 (851)
T ss_pred hccCCCCCceEEEEeC
Confidence 999999 666655554
No 69
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.98 E-value=1.8e-31 Score=274.91 Aligned_cols=404 Identities=17% Similarity=0.205 Sum_probs=258.1
Q ss_pred cHHHHHHHHHHHh-cCCEEEEEcCCCCcHHhHHHHHHhhcCccC---------CCcEEEEecchHHHHHHHHHHHHHHhC
Q 011751 15 IASVEKRLVEEVR-KNDILIIVGETGSGKTTQLPQFLFHAGFCR---------DGKLIGVTQPRRVAAVTVAKRVAEESG 84 (478)
Q Consensus 15 ~~~~q~~~~~~l~-~~~~~~i~apTGsGKT~~~~~~~~~~~~~~---------~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (478)
.-.+|..+..+.. ..+++++|||||+|||-.+.+-+++..-.+ ...+++++.|.++|++.+...+++...
T Consensus 310 LNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla 389 (1674)
T KOG0951|consen 310 LNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLA 389 (1674)
T ss_pred hhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhcc
Confidence 4467888777755 457999999999999966655554432211 123799999999999988887766543
Q ss_pred CcCCCEEEEEEeeccc------------CChhhhHHHHhhC----cCcCCCcceEeecccccchhhhHHHHHHHHHHHhh
Q 011751 85 VELGQRVGYSIRFDDR------------TSTSTRIKEALLD----PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (478)
Q Consensus 85 ~~~~~~vg~~~~~~~~------------~~~~~~~~~~l~~----~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~ 148 (478)
..|.+|+=.. .+.. +++.+.-..+-.+ ...+-++++||||+|
T Consensus 390 -~~GI~V~ElT-gD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIH-------------------- 447 (1674)
T KOG0951|consen 390 -PLGITVLELT-GDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIH-------------------- 447 (1674)
T ss_pred -ccCcEEEEec-ccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhh--------------------
Confidence 3455554221 1111 1111111111111 345568999999999
Q ss_pred cccccCCCCCCCCCCCchhhhccCCCCCCccccccccCC---CCCCceEEEEcCCC-ChhHHHhhhCCCC--eEEe--CC
Q 011751 149 SKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGR---KFAPLKLIIMSASL-DARGFSEYFGCAK--AVHV--QG 220 (478)
Q Consensus 149 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~lSAT~-~~~~~~~~~~~~~--~~~~--~~ 220 (478)
|+...||..++++..+...+ ...+.+++++|||+ |.++.+.|+...+ .+.. .-
T Consensus 448 -------------------LLhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~sy 508 (1674)
T KOG0951|consen 448 -------------------LLHDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSY 508 (1674)
T ss_pred -------------------hcccccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccCccc
Confidence 33333444444443333321 23678999999999 9999999987654 3333 34
Q ss_pred ccccceEEecCCCCcchHHH---HHHHHH-HhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhc----------------
Q 011751 221 RQFPVEILYTLYPEPDYLDA---TLITIF-QVHLDEAPGDILVFLTGQEEIESVERLVQERLLQ---------------- 280 (478)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~---------------- 280 (478)
++.|++..|....+.+.... +-+..+ ++......+++|||+.+|+++-+.|+.+++.+..
T Consensus 509 RpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~e 588 (1674)
T KOG0951|consen 509 RPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASRE 588 (1674)
T ss_pred CcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhh
Confidence 55677777766655443322 111222 2333445689999999999999999999955330
Q ss_pred ---------C---CCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecC
Q 011751 281 ---------L---PEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDP 348 (478)
Q Consensus 281 ---------~---~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~ 348 (478)
. -.+...+.++.+|+||+..+|..+++.|++|.++|+|+|.++++|||+|+-+++|. .+..|||
T Consensus 589 ilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViik----gtqvy~p 664 (1674)
T KOG0951|consen 589 ILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIK----GTQVYDP 664 (1674)
T ss_pred hhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEec----CccccCc
Confidence 0 02344568899999999999999999999999999999999999999999999996 7889999
Q ss_pred CCCcccceeeecCHHHHHHhhcccCCCC---CCeEEEecCHhhHhc---ccCCCCC--cccccCchHHHHHHHHcCCCCC
Q 011751 349 VKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPENEFDK---LEDSTKP--EIKRCNLSNVILQLKALGVDDI 420 (478)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~~~---~~~~~~p--ei~~~~l~~~~l~~~~~~~~~~ 420 (478)
..|.- .+.|+.+.+||.|||||.+ .|..+..-..++... +.....| +-.-..+..-+-.=+.+|+...
T Consensus 665 ekg~w----~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~Gv~~~ 740 (1674)
T KOG0951|consen 665 EKGRW----TELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLGVRSA 740 (1674)
T ss_pred ccCcc----ccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcchhhH
Confidence 98854 3789999999999999998 344433333222221 2222222 1111111111111122232211
Q ss_pred CC-ccCC-----------------------CCC----CHHHHHHHHHHHHHCCCCCCCC-----CCCHHHHHHhccCCCC
Q 011751 421 IG-FDFM-----------------------EKP----SRASIIKSLEQLFLLGALTDDC-----KLSDPVGHQMARLPLD 467 (478)
Q Consensus 421 ~~-~~~~-----------------------~~p----~~~~l~~al~~L~~~g~l~~~~-----~~t~~lG~~~~~~~~~ 467 (478)
.. ..|+ +++ ..+-+..|.-.|++.|.|--+. ..|+ +|++.+.+++.
T Consensus 741 ~d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le~~r~~lvhsa~~ll~~~~li~yd~~s~~~~~te-lg~ias~yyi~ 819 (1674)
T KOG0951|consen 741 RDAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLEQRRADLVHSAATLLDKAGLIKYDRKSGAIQATE-LGRIASSYYIT 819 (1674)
T ss_pred HHHHhhhcceeeEEeeccCchhccCCcccchHHHHHHHhhhHHHHHhhHhhcCccccccccCcccchh-hccccceeeee
Confidence 11 0111 111 2244667888888999885432 6798 99999999875
Q ss_pred H
Q 011751 468 P 468 (478)
Q Consensus 468 p 468 (478)
-
T Consensus 820 ~ 820 (1674)
T KOG0951|consen 820 H 820 (1674)
T ss_pred c
Confidence 4
No 70
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.8e-31 Score=248.73 Aligned_cols=312 Identities=18% Similarity=0.265 Sum_probs=228.4
Q ss_pred hHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--hHHHHHHhh--cCc---cCCCcEEEEecchHHHHHHHHH
Q 011751 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFH--AGF---CRDGKLIGVTQPRRVAAVTVAK 77 (478)
Q Consensus 5 ~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT--~~~~~~~~~--~~~---~~~~~~i~~~~p~~~l~~~~~~ 77 (478)
+.....++-.++.+|..+++.+++|++++..|.|||||| +++|++-.. ... ...+..+++++||+++++|+.+
T Consensus 32 kAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~ 111 (569)
T KOG0346|consen 32 KAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYK 111 (569)
T ss_pred HHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHH
Confidence 444455666788999999999999999999999999999 555554321 111 1235678999999999999887
Q ss_pred HHHHH---hCCcCC-CEEE-----------EEEeecccCChhhhHHHHhhC---cCcCCCcceEeecccccchhhhHHHH
Q 011751 78 RVAEE---SGVELG-QRVG-----------YSIRFDDRTSTSTRIKEALLD---PYLSRYSAIIVDEAHERTVHTDVLLG 139 (478)
Q Consensus 78 ~~~~~---~~~~~~-~~vg-----------~~~~~~~~~~~~~~~~~~l~~---~~l~~~~~lIiDE~H~r~~~~~~~l~ 139 (478)
-+.+. +...+. ..+. .....+..++++.++..++.. ..+..++++|+|||
T Consensus 112 viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEA------------ 179 (569)
T KOG0346|consen 112 VIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEA------------ 179 (569)
T ss_pred HHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechh------------
Confidence 65432 221110 0000 001112223444444433332 34678999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC--ChhHHHhhhCCCC-eE
Q 011751 140 LLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSEYFGCAK-AV 216 (478)
Q Consensus 140 ~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~--~~~~~~~~~~~~~-~~ 216 (478)
|.++..++...+..+.+.++ +..|.++||||+ |...+.+.+-..| ++
T Consensus 180 --------------------------DLllsfGYeedlk~l~~~LP----r~~Q~~LmSATl~dDv~~LKkL~l~nPviL 229 (569)
T KOG0346|consen 180 --------------------------DLLLSFGYEEDLKKLRSHLP----RIYQCFLMSATLSDDVQALKKLFLHNPVIL 229 (569)
T ss_pred --------------------------hhhhhcccHHHHHHHHHhCC----chhhheeehhhhhhHHHHHHHHhccCCeEE
Confidence 58888888888888888887 678999999999 7778887665444 45
Q ss_pred EeCCcccc----ceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEE
Q 011751 217 HVQGRQFP----VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVP 292 (478)
Q Consensus 217 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~ 292 (478)
.+.+...+ +..++....+.+..-. +-.++.+.. -.|++|||+||...|..+.-.|++. ++....
T Consensus 230 kl~e~el~~~dqL~Qy~v~cse~DKfll-lyallKL~L--I~gKsliFVNtIdr~YrLkLfLeqF---------Giksci 297 (569)
T KOG0346|consen 230 KLTEGELPNPDQLTQYQVKCSEEDKFLL-LYALLKLRL--IRGKSLIFVNTIDRCYRLKLFLEQF---------GIKSCI 297 (569)
T ss_pred EeccccCCCcccceEEEEEeccchhHHH-HHHHHHHHH--hcCceEEEEechhhhHHHHHHHHHh---------CcHhhh
Confidence 55544433 3445555444443322 222222222 2799999999999999999999887 888899
Q ss_pred ccCCCCHHHHHhhcCcCCCCccEEEEecc-----------------------------------ccccccccCCeEEEEe
Q 011751 293 IFSSLPSEQQMRVFAPAAAGFRKVILATN-----------------------------------IAETSVTIPGIKYVID 337 (478)
Q Consensus 293 ~h~~l~~~~r~~i~~~f~~g~~~vlvaT~-----------------------------------~~~~Gvdip~v~~VI~ 337 (478)
+.|.||...|-.|++.|..|.+.++|||| -.++|||+..|.+|||
T Consensus 298 LNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlN 377 (569)
T KOG0346|consen 298 LNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLN 377 (569)
T ss_pred hcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeee
Confidence 99999999999999999999999999999 2457999999999999
Q ss_pred CCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEEecCHhh
Q 011751 338 PGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENE 388 (478)
Q Consensus 338 ~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 388 (478)
|| +|.+..+|+||+||++|.+ +|.+..++.+.+
T Consensus 378 --------FD----------~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e 411 (569)
T KOG0346|consen 378 --------FD----------FPETVTSYIHRVGRTARGNNKGTALSFVSPKE 411 (569)
T ss_pred --------cC----------CCCchHHHHHhccccccCCCCCceEEEecchH
Confidence 88 7999999999999999999 999999986554
No 71
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.97 E-value=2.8e-31 Score=277.57 Aligned_cols=321 Identities=18% Similarity=0.217 Sum_probs=238.9
Q ss_pred hhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCC
Q 011751 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ 89 (478)
Q Consensus 10 ~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~ 89 (478)
...|.+.++|++++..|..|++|+++||||||||.+...++...... +.+++++.|.+++.+|...++...++.- ..
T Consensus 115 ~~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~--~qrviYTsPIKALsNQKyrdl~~~fgdv-~~ 191 (1041)
T COG4581 115 EYPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD--GQRVIYTSPIKALSNQKYRDLLAKFGDV-AD 191 (1041)
T ss_pred hCCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc--CCceEeccchhhhhhhHHHHHHHHhhhh-hh
Confidence 45678899999999999999999999999999998877777666543 4559999999999999999998888843 23
Q ss_pred EEEEEEe---ecccC----ChhhhHHHHhhC--cCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccCCCCCCC
Q 011751 90 RVGYSIR---FDDRT----STSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNN 160 (478)
Q Consensus 90 ~vg~~~~---~~~~~----~~~~~~~~~l~~--~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 160 (478)
.||...+ ..... -+.+.+++++.. ..+..+..||+||+|
T Consensus 192 ~vGL~TGDv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvH-------------------------------- 239 (1041)
T COG4581 192 MVGLMTGDVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVH-------------------------------- 239 (1041)
T ss_pred hccceecceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeee--------------------------------
Confidence 3442221 11111 122455555543 568899999999999
Q ss_pred CCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC-ChhHHHhhhCC-----CCeEEeCCccccceEEecCCC-
Q 011751 161 NNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGC-----AKAVHVQGRQFPVEILYTLYP- 233 (478)
Q Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~-~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~- 233 (478)
.|.|+.+|..|++.+..++ .++++|+||||+ |+++|+.|++. ..++..+.++.|...++....
T Consensus 240 ------yi~D~eRG~VWEE~Ii~lP----~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~ 309 (1041)
T COG4581 240 ------YIGDRERGVVWEEVIILLP----DHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKG 309 (1041)
T ss_pred ------eccccccchhHHHHHHhcC----CCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCc
Confidence 8999999999999999998 778999999999 99999999973 235555666777766654431
Q ss_pred -------CcchHHH----HH--------------------------------------HHHHHhhhcCCCCCEEEEcCCH
Q 011751 234 -------EPDYLDA----TL--------------------------------------ITIFQVHLDEAPGDILVFLTGQ 264 (478)
Q Consensus 234 -------~~~~~~~----~~--------------------------------------~~~~~~~~~~~~~~~LVF~~s~ 264 (478)
..++... .. -.+.........-++++|+-++
T Consensus 310 l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr 389 (1041)
T COG4581 310 LFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSR 389 (1041)
T ss_pred eeeeecccccchhhcchhhhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEch
Confidence 1110000 00 0112222223356899999999
Q ss_pred HHHHHHHHHHHHH-------------------HhcCCCCCCCe-------------EEEEccCCCCHHHHHhhcCcCCCC
Q 011751 265 EEIESVERLVQER-------------------LLQLPEASRKL-------------VTVPIFSSLPSEQQMRVFAPAAAG 312 (478)
Q Consensus 265 ~~~~~l~~~l~~~-------------------~~~~~~~~~~~-------------~v~~~h~~l~~~~r~~i~~~f~~g 312 (478)
..|+..+..+... ...+..+..++ .+..+|+||-+..+..++..|..|
T Consensus 390 ~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~G 469 (1041)
T COG4581 390 RGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEG 469 (1041)
T ss_pred hhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhcc
Confidence 9999988877621 11111111111 345789999999999999999999
Q ss_pred ccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC---CCeEEEecC
Q 011751 313 FRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYP 385 (478)
Q Consensus 313 ~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~ 385 (478)
.++|++||.+++.|+|+|.-++|+- ....+|... -.|.+..+|.|+.|||||.| .|.++.+.+
T Consensus 470 LvkvvFaTeT~s~GiNmPartvv~~----~l~K~dG~~------~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 470 LVKVVFATETFAIGINMPARTVVFT----SLSKFDGNG------HRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred ceeEEeehhhhhhhcCCcccceeee----eeEEecCCc------eeecChhHHHHhhhhhccccccccceEEEecC
Confidence 9999999999999999999999984 455566322 25899999999999999999 799988853
No 72
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.97 E-value=2e-31 Score=258.66 Aligned_cols=311 Identities=16% Similarity=0.196 Sum_probs=233.7
Q ss_pred HHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccC-CCcEEEEecchHHHHHHHHHHHHHHhC-
Q 011751 7 LQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPRRVAAVTVAKRVAEESG- 84 (478)
Q Consensus 7 ~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~-~~~~i~~~~p~~~l~~~~~~~~~~~~~- 84 (478)
+....+--++++|..+++++..+-+++|++..|+|||.++..++.+..-.. ....++++.|||+++.|+...+.+...
T Consensus 40 lrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~s 119 (980)
T KOG4284|consen 40 LRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPS 119 (980)
T ss_pred HHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhccc
Confidence 333456678899999999999999999999999999966655555443322 255788999999999999887765433
Q ss_pred ---CcCCCEEEEEEee---------cccCChhhhHHHHhhC--cCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcc
Q 011751 85 ---VELGQRVGYSIRF---------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSK 150 (478)
Q Consensus 85 ---~~~~~~vg~~~~~---------~~~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~ 150 (478)
..+...+|....- ...+.+..++..+... ...+.++++|+|||+
T Consensus 120 f~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEAD---------------------- 177 (980)
T KOG4284|consen 120 FTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEAD---------------------- 177 (980)
T ss_pred ccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHH----------------------
Confidence 2223333321100 0112333444443322 457899999999995
Q ss_pred cccCCCCCCCCCCCchhhhc-cCCCCCCccccccccCCCCCCceEEEEcCCC--Ch-hHHHhhhCCCCeEEeCCcc---c
Q 011751 151 SADGHSNGNNNNENSDMILD-RGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DA-RGFSEYFGCAKAVHVQGRQ---F 223 (478)
Q Consensus 151 ~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~--~~-~~~~~~~~~~~~~~~~~~~---~ 223 (478)
.+++ ..|.+++--++..++ ...|++++|||. |. +.+++|+.++..+....+. +
T Consensus 178 ----------------kL~~t~sfq~~In~ii~slP----~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~ 237 (980)
T KOG4284|consen 178 ----------------KLMDTESFQDDINIIINSLP----QIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLF 237 (980)
T ss_pred ----------------hhhchhhHHHHHHHHHHhcc----hhheeeEEeccCchhHHHHHHHHhcccceeecccCCceee
Confidence 4444 334444444555555 677999999999 33 3578899888777666543 4
Q ss_pred cceEEecCCCCcc----hHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCH
Q 011751 224 PVEILYTLYPEPD----YLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPS 299 (478)
Q Consensus 224 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~ 299 (478)
.++.++...+.+. -....+..+-+++..-+-.+.||||+....|+.++..|... ++.+..+.|.|++
T Consensus 238 GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ss---------G~d~~~ISgaM~Q 308 (980)
T KOG4284|consen 238 GIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSS---------GLDVTFISGAMSQ 308 (980)
T ss_pred chhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhcc---------CCCeEEeccccch
Confidence 4566665555543 23445566667777778889999999999999999999876 9999999999999
Q ss_pred HHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CC
Q 011751 300 EQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PG 378 (478)
Q Consensus 300 ~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G 378 (478)
.+|..+++.++.-..+|||+||..++|||-|.|+.||| .| .|.+-.+|.||+|||||.| .|
T Consensus 309 ~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVN--------iD----------~p~d~eTY~HRIGRAgRFG~~G 370 (980)
T KOG4284|consen 309 KDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVN--------ID----------APADEETYFHRIGRAGRFGAHG 370 (980)
T ss_pred hHHHHHHHHhhhceEEEEEecchhhccCCccccceEEe--------cC----------CCcchHHHHHHhhhcccccccc
Confidence 99999999999999999999999999999999999999 66 5889999999999999999 89
Q ss_pred eEEEecCH
Q 011751 379 KCFRLYPE 386 (478)
Q Consensus 379 ~~~~l~~~ 386 (478)
.++.++-.
T Consensus 371 ~aVT~~~~ 378 (980)
T KOG4284|consen 371 AAVTLLED 378 (980)
T ss_pred eeEEEecc
Confidence 98888843
No 73
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.6e-30 Score=267.00 Aligned_cols=312 Identities=19% Similarity=0.272 Sum_probs=227.2
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--hHHHHHHhhcCc----cCCCcEEEEecchHHHHHHHHH
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGF----CRDGKLIGVTQPRRVAAVTVAK 77 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT--~~~~~~~~~~~~----~~~~~~i~~~~p~~~l~~~~~~ 77 (478)
++.+++-+.=+++++|.++|++|..|++++.+|.|||||| +++|.+-..... ..+|...+++.|+++++.|+.+
T Consensus 377 l~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r 456 (997)
T KOG0334|consen 377 LETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHR 456 (997)
T ss_pred HHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHH
Confidence 3444444445899999999999999999999999999999 434544221111 2247789999999999999999
Q ss_pred HHHHHhCCcCCCEEEEEEeecccCChhh--------------hHHHH--hhCc---CcCCCcceEeecccccchhhhHHH
Q 011751 78 RVAEESGVELGQRVGYSIRFDDRTSTST--------------RIKEA--LLDP---YLSRYSAIIVDEAHERTVHTDVLL 138 (478)
Q Consensus 78 ~~~~~~~~~~~~~vg~~~~~~~~~~~~~--------------~~~~~--l~~~---~l~~~~~lIiDE~H~r~~~~~~~l 138 (478)
.+.++... .+..+-...+..+...... +...+ .++. .+.++.++|+||+
T Consensus 457 ~~~kf~k~-l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~dea----------- 524 (997)
T KOG0334|consen 457 EVRKFLKL-LGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEA----------- 524 (997)
T ss_pred HHHHHHhh-cCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechh-----------
Confidence 98777654 4443322221111111111 11111 1222 3555669999999
Q ss_pred HHHHHHHHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChh--HHHh-hhCCCCe
Q 011751 139 GLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--GFSE-YFGCAKA 215 (478)
Q Consensus 139 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~--~~~~-~~~~~~~ 215 (478)
|+|+|+++.++...++..+. ++.|.+++|||.+.. .++. .+. .|+
T Consensus 525 ---------------------------DrmfdmgfePq~~~Ii~nlr----pdrQtvlfSatfpr~m~~la~~vl~-~Pv 572 (997)
T KOG0334|consen 525 ---------------------------DRMFDMGFEPQITRILQNLR----PDRQTVLFSATFPRSMEALARKVLK-KPV 572 (997)
T ss_pred ---------------------------hhhheeccCcccchHHhhcc----hhhhhhhhhhhhhHHHHHHHHHhhc-CCe
Confidence 58999999999999888886 899999999999544 4443 333 443
Q ss_pred -EEeCCcc---ccceEEecCCC-CcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEE
Q 011751 216 -VHVQGRQ---FPVEILYTLYP-EPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVT 290 (478)
Q Consensus 216 -~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v 290 (478)
+.+.++. -.+...+...+ +.+.....+..+- .. ...+++||||.+.+.|..+.+.|.+. ++.+
T Consensus 573 eiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~-e~--~e~~~tiiFv~~qe~~d~l~~~L~~a---------g~~~ 640 (997)
T KOG0334|consen 573 EIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLG-ER--YEDGKTIIFVDKQEKADALLRDLQKA---------GYNC 640 (997)
T ss_pred eEEEccceeEeccceEEEEEecCchHHHHHHHHHHH-HH--hhcCCEEEEEcCchHHHHHHHHHHhc---------Ccch
Confidence 2333222 12333343334 3333333333322 22 23899999999999999999999876 8888
Q ss_pred EEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhc
Q 011751 291 VPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSG 370 (478)
Q Consensus 291 ~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~G 370 (478)
..+||+.++.+|..+++.|++|..++||||+++++|+|++++..||| || +|.-.+.|+||.|
T Consensus 641 ~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvn--------yd----------~pnh~edyvhR~g 702 (997)
T KOG0334|consen 641 DSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVN--------YD----------FPNHYEDYVHRVG 702 (997)
T ss_pred hhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEE--------cc----------cchhHHHHHHHhc
Confidence 88999999999999999999999999999999999999999999999 88 6777788999999
Q ss_pred ccCCCC-CCeEEEecCHhhH
Q 011751 371 RAGREG-PGKCFRLYPENEF 389 (478)
Q Consensus 371 RaGR~~-~G~~~~l~~~~~~ 389 (478)
|+||.| .|.||.|.++++.
T Consensus 703 RTgragrkg~AvtFi~p~q~ 722 (997)
T KOG0334|consen 703 RTGRAGRKGAAVTFITPDQL 722 (997)
T ss_pred ccccCCccceeEEEeChHHh
Confidence 999999 8999999987543
No 74
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=6.6e-31 Score=242.37 Aligned_cols=304 Identities=17% Similarity=0.303 Sum_probs=226.4
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhc-CccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEE
Q 011751 13 LPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA-GFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRV 91 (478)
Q Consensus 13 ~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~-~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~v 91 (478)
-.++.+|+.++..+..|.++.+.+++|+|||..+...++.. ........++++.|+++++.|..+.. ...+...+..+
T Consensus 47 ekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~-~~lg~~~~~~v 125 (397)
T KOG0327|consen 47 EKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVV-RALGDHMDVSV 125 (397)
T ss_pred CCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHH-Hhhhcccceee
Confidence 35788999999999999999999999999995555555444 23333456899999999999998543 33333322222
Q ss_pred EEEEeecc---------------cCChhhhHHHHhhCc--CcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccC
Q 011751 92 GYSIRFDD---------------RTSTSTRIKEALLDP--YLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADG 154 (478)
Q Consensus 92 g~~~~~~~---------------~~~~~~~~~~~l~~~--~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~ 154 (478)
...+++.. ...+..++..++... ....++++|+||+
T Consensus 126 ~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEa--------------------------- 178 (397)
T KOG0327|consen 126 HACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEA--------------------------- 178 (397)
T ss_pred eeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecch---------------------------
Confidence 21111111 112233333444322 3456899999999
Q ss_pred CCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChh--HHHh-hhCCCCeEEeCCcccc---ceEE
Q 011751 155 HSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--GFSE-YFGCAKAVHVQGRQFP---VEIL 228 (478)
Q Consensus 155 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~--~~~~-~~~~~~~~~~~~~~~~---~~~~ 228 (478)
|.|+..++...+..++..++ ++.|++++|||++.+ .+++ |..++-.+.+...... +..+
T Consensus 179 -----------DEmLs~gfkdqI~~if~~lp----~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~ 243 (397)
T KOG0327|consen 179 -----------DEMLSRGFKDQIYDIFQELP----SDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQF 243 (397)
T ss_pred -----------HhhhccchHHHHHHHHHHcC----cchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeee
Confidence 58999999999888888888 788999999999444 4554 4444433443332221 2233
Q ss_pred ecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCc
Q 011751 229 YTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAP 308 (478)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~ 308 (478)
|......+ .+.++.+++. ...+.+|||||++.+..+...|... ++.+..+|+.|.+.+|..+...
T Consensus 244 ~i~v~k~~----k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~---------~~~~s~~~~d~~q~~R~~~~~e 308 (397)
T KOG0327|consen 244 YINVEKEE----KLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAH---------GFTVSAIHGDMEQNERDTLMRE 308 (397)
T ss_pred eeeccccc----cccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhC---------CceEEEeecccchhhhhHHHHH
Confidence 33322222 4555666655 4778999999999999999999665 8899999999999999999999
Q ss_pred CCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEEecCHh
Q 011751 309 AAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPEN 387 (478)
Q Consensus 309 f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~ 387 (478)
|+.|..+|||+|+.+++|+|+-++..||+ || .|..+++|.||+||+||.| +|.+..+++++
T Consensus 309 f~~gssrvlIttdl~argidv~~~slvin--------yd----------lP~~~~~yihR~gr~gr~grkg~~in~v~~~ 370 (397)
T KOG0327|consen 309 FRSGSSRVLITTDLLARGIDVQQVSLVVN--------YD----------LPARKENYIHRIGRAGRFGRKGVAINFVTEE 370 (397)
T ss_pred hhcCCceEEeeccccccccchhhcceeee--------ec----------cccchhhhhhhcccccccCCCceeeeeehHh
Confidence 99999999999999999999999999999 88 5888999999999999999 99999999887
Q ss_pred hHhcc
Q 011751 388 EFDKL 392 (478)
Q Consensus 388 ~~~~~ 392 (478)
+...+
T Consensus 371 d~~~l 375 (397)
T KOG0327|consen 371 DVRDL 375 (397)
T ss_pred hHHHH
Confidence 66554
No 75
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.97 E-value=3.1e-29 Score=245.13 Aligned_cols=278 Identities=20% Similarity=0.188 Sum_probs=172.3
Q ss_pred HHHHHHHHHhcCC--EEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCC---cCCCEEE
Q 011751 18 VEKRLVEEVRKND--ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGV---ELGQRVG 92 (478)
Q Consensus 18 ~q~~~~~~l~~~~--~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~---~~~~~vg 92 (478)
+|.++++++.+++ +++++||||||||.++...++.. +..++++.|+++++.++.+++...+.. ..+..+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-----~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~ 75 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-----ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLL 75 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-----CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEE
Confidence 4889999999887 48899999999997665555532 235788899999999999887776521 0111111
Q ss_pred EEEee---c-------------------------------ccCChhhhHHHHhh----Cc------CcCCCcceEeeccc
Q 011751 93 YSIRF---D-------------------------------DRTSTSTRIKEALL----DP------YLSRYSAIIVDEAH 128 (478)
Q Consensus 93 ~~~~~---~-------------------------------~~~~~~~~~~~~l~----~~------~l~~~~~lIiDE~H 128 (478)
...+. + ...+....+..++. .. ++.+++++|+||+|
T Consensus 76 ~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H 155 (357)
T TIGR03158 76 HVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFH 155 (357)
T ss_pred EecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEeccc
Confidence 10000 0 00011111212111 11 25789999999999
Q ss_pred ccchhhhHHHH-HHHHHHHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChhHHH
Q 011751 129 ERTVHTDVLLG-LLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFS 207 (478)
Q Consensus 129 ~r~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~ 207 (478)
+.+.+....+. .+....-.+. .....++++||||++.....
T Consensus 156 ~~~~~~~~~~~~~l~~~~~~~~--------------------------------------~~~~~~~i~lSAT~~~~~~~ 197 (357)
T TIGR03158 156 LYDAKQLVGMLFLLAYMQLIRF--------------------------------------FECRRKFVFLSATPDPALIL 197 (357)
T ss_pred ccCcccchhhhhhhHHHHHHHh--------------------------------------hhcCCcEEEEecCCCHHHHH
Confidence 86654432222 1111111110 00346999999999654322
Q ss_pred ---hh--hCCCCeEEeCCcc----------------------ccceEEecCCCC--cchHHHHHHHHHHhhhcCCCCCEE
Q 011751 208 ---EY--FGCAKAVHVQGRQ----------------------FPVEILYTLYPE--PDYLDATLITIFQVHLDEAPGDIL 258 (478)
Q Consensus 208 ---~~--~~~~~~~~~~~~~----------------------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~L 258 (478)
+. ++ .+...+.+.. .+++..+...+. .+.+......+.......+++++|
T Consensus 198 ~l~~~~~~~-~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~L 276 (357)
T TIGR03158 198 RLQNAKQAG-VKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGA 276 (357)
T ss_pred HHHhccccC-ceeeeecCcccccCCChhhhccccccccceeccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEE
Confidence 22 22 3444544441 123333333111 111222223333333334578999
Q ss_pred EEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeC
Q 011751 259 VFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDP 338 (478)
Q Consensus 259 VF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~ 338 (478)
|||+|++.++.++..|++.. .++.+..+||.+++.+|.++. +.+|+|||+++++|+|+|++ +||
T Consensus 277 If~nt~~~~~~l~~~L~~~~-------~~~~~~~l~g~~~~~~R~~~~------~~~iLVaTdv~~rGiDi~~~-~vi-- 340 (357)
T TIGR03158 277 IILDSLDEVNRLSDLLQQQG-------LGDDIGRITGFAPKKDRERAM------QFDILLGTSTVDVGVDFKRD-WLI-- 340 (357)
T ss_pred EEECCHHHHHHHHHHHhhhC-------CCceEEeeecCCCHHHHHHhc------cCCEEEEecHHhcccCCCCc-eEE--
Confidence 99999999999999998741 135678899999999987653 67899999999999999987 455
Q ss_pred CcccceeecCCCCcccceeeecCHHHHHHhhcccC
Q 011751 339 GFVKARLYDPVKGMESLLVVPISKAQALQRSGRAG 373 (478)
Q Consensus 339 g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaG 373 (478)
++ |.+.++|+||+||+|
T Consensus 341 -------~~-----------p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 -------FS-----------ARDAAAFWQRLGRLG 357 (357)
T ss_pred -------EC-----------CCCHHHHhhhcccCC
Confidence 22 678899999999998
No 76
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.97 E-value=6.8e-29 Score=250.34 Aligned_cols=119 Identities=20% Similarity=0.290 Sum_probs=95.1
Q ss_pred HhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEE----ccCCCCHHHHHhhcCcCCCCccEEEEeccc
Q 011751 247 QVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVP----IFSSLPSEQQMRVFAPAAAGFRKVILATNI 322 (478)
Q Consensus 247 ~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~----~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~ 322 (478)
+.....+..++|||+.+|+.++.+..+|.+.... ...+.+-+.- -..+|++.++.++++.|++|..+|||||++
T Consensus 406 e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~--~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV 483 (746)
T KOG0354|consen 406 EQFEQNPDSRTIIFVETRESALALKKWLLQLHEL--GIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSV 483 (746)
T ss_pred HHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhc--ccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecc
Confidence 3334455778999999999999999999862110 0011111111 124899999999999999999999999999
Q ss_pred cccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCCCCeEEEecCH
Q 011751 323 AETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPE 386 (478)
Q Consensus 323 ~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~ 386 (478)
+|.|+|||.++.||- || ...+....+||.|| ||..+|.|+.|++.
T Consensus 484 ~EEGLDI~ec~lVIc--------Yd----------~~snpIrmIQrrGR-gRa~ns~~vll~t~ 528 (746)
T KOG0354|consen 484 AEEGLDIGECNLVIC--------YD----------YSSNPIRMVQRRGR-GRARNSKCVLLTTG 528 (746)
T ss_pred hhccCCcccccEEEE--------ec----------CCccHHHHHHHhcc-ccccCCeEEEEEcc
Confidence 999999999999998 87 34567789999999 99999999999973
No 77
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.96 E-value=1.1e-28 Score=252.02 Aligned_cols=291 Identities=16% Similarity=0.107 Sum_probs=187.0
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEE
Q 011751 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRV 91 (478)
Q Consensus 12 ~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~v 91 (478)
.+.++++|.+++..+..+++.++++|||+|||.++..++... ......++++++|+++|+.|..+++.+..........
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~-~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~ 190 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYY-LENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMH 190 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH-HhcCCCeEEEEECcHHHHHHHHHHHHHhcccccccee
Confidence 367899999999999999999999999999997654433211 1122337999999999999999998775543221111
Q ss_pred EEEEee------cccCChhhhHHHHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccCCCCCCCCCCCc
Q 011751 92 GYSIRF------DDRTSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENS 165 (478)
Q Consensus 92 g~~~~~------~~~~~~~~~~~~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~ 165 (478)
+...+. ...+.+...+.... ..++.+++++|+||||.-... .+..+
T Consensus 191 ~i~~g~~~~~~~~I~VaT~qsl~~~~-~~~~~~~~~iIvDEaH~~~~~--~~~~i------------------------- 242 (501)
T PHA02558 191 KIYSGTAKDTDAPIVVSTWQSAVKQP-KEWFDQFGMVIVDECHLFTGK--SLTSI------------------------- 242 (501)
T ss_pred EEecCcccCCCCCEEEeeHHHHhhch-hhhccccCEEEEEchhcccch--hHHHH-------------------------
Confidence 111000 01112222222211 235788999999999953211 11111
Q ss_pred hhhhccCCCCCCccccccccCCCCCCceEEEEcCCC-Chh--H--HHhhhCCCCeEEeC-------CccccceEE--ecC
Q 011751 166 DMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DAR--G--FSEYFGCAKAVHVQ-------GRQFPVEIL--YTL 231 (478)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~-~~~--~--~~~~~~~~~~~~~~-------~~~~~~~~~--~~~ 231 (478)
+..++ ...++++||||+ +.. . +..+||.. ...+. +...++... ...
T Consensus 243 ---------------l~~~~----~~~~~lGLTATp~~~~~~~~~~~~~fG~i-~~~v~~~~li~~g~l~~~~~~~v~~~ 302 (501)
T PHA02558 243 ---------------ITKLD----NCKFKFGLTGSLRDGKANILQYVGLFGDI-FKPVTTSQLMEEGQVTDLKINSIFLR 302 (501)
T ss_pred ---------------HHhhh----ccceEEEEeccCCCccccHHHHHHhhCCc-eEEecHHHHHhCCCcCCceEEEEecc
Confidence 11111 234789999999 322 1 23345532 11111 111111111 111
Q ss_pred CC--------CcchH------------HHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEE
Q 011751 232 YP--------EPDYL------------DATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTV 291 (478)
Q Consensus 232 ~~--------~~~~~------------~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~ 291 (478)
.+ ..++. ...+..+..... ..++++|||+++.++++.+++.|.+. +..+.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~-~~~~~~lV~~~~~~h~~~L~~~L~~~---------g~~v~ 372 (501)
T PHA02558 303 YPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLA-KKGENTFVMFKYVEHGKPLYEMLKKV---------YDKVY 372 (501)
T ss_pred CCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHH-hcCCCEEEEEEEHHHHHHHHHHHHHc---------CCCEE
Confidence 00 00110 111111111111 34678999999999999999999886 77899
Q ss_pred EccCCCCHHHHHhhcCcCCCCccEEEEec-cccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhc
Q 011751 292 PIFSSLPSEQQMRVFAPAAAGFRKVILAT-NIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSG 370 (478)
Q Consensus 292 ~~h~~l~~~~r~~i~~~f~~g~~~vlvaT-~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~G 370 (478)
.+||+++.++|..+++.|++|...||||| +++++|+|+|++++||. ++ .+.|...|+||+|
T Consensus 373 ~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl--------~~----------p~~s~~~~~QriG 434 (501)
T PHA02558 373 YVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIF--------AH----------PSKSKIIVLQSIG 434 (501)
T ss_pred EEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEE--------ec----------CCcchhhhhhhhh
Confidence 99999999999999999999999999998 89999999999999996 44 4667888999999
Q ss_pred ccCCCCCCe
Q 011751 371 RAGREGPGK 379 (478)
Q Consensus 371 RaGR~~~G~ 379 (478)
|++|.++|+
T Consensus 435 R~~R~~~~K 443 (501)
T PHA02558 435 RVLRKHGSK 443 (501)
T ss_pred ccccCCCCC
Confidence 999998554
No 78
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.96 E-value=3.6e-28 Score=256.02 Aligned_cols=301 Identities=20% Similarity=0.275 Sum_probs=218.8
Q ss_pred CcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--hHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEE
Q 011751 14 PIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRV 91 (478)
Q Consensus 14 ~~~~~q~~~~~~l~~~~~~~i~apTGsGKT--~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~v 91 (478)
.-++-|.+++..++.|++++|..|||+||| +++|.++.. ...+++.|...|...+...+. ..+... ...
T Consensus 264 ~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~-------gitvVISPL~SLm~DQv~~L~-~~~I~a-~~L 334 (941)
T KOG0351|consen 264 GFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLG-------GVTVVISPLISLMQDQVTHLS-KKGIPA-CFL 334 (941)
T ss_pred cCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccC-------CceEEeccHHHHHHHHHHhhh-hcCcce-eec
Confidence 346789999999999999999999999999 666655543 368899999999987766652 111110 000
Q ss_pred E---------------------EEEee--cccCChhhhHHHHhhCcCcCC---CcceEeecccccchhhhHHHHHHHHHH
Q 011751 92 G---------------------YSIRF--DDRTSTSTRIKEALLDPYLSR---YSAIIVDEAHERTVHTDVLLGLLKKVQ 145 (478)
Q Consensus 92 g---------------------~~~~~--~~~~~~~~~~~~~l~~~~l~~---~~~lIiDE~H~r~~~~~~~l~~l~~~~ 145 (478)
+ +.+-+ .........+...+. .+.. +..+||||||+.+.|.+-+..-.+++.
T Consensus 335 ~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~--~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~ 412 (941)
T KOG0351|consen 335 SSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLA--DLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLG 412 (941)
T ss_pred cccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHH--hccCCCeeEEEEecHHHHhhhhcccccHHHHHHH
Confidence 0 00000 000000111111111 1223 789999999999999999988887776
Q ss_pred HhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCCh---hHHHhhhCCCCeEEeCCcc
Q 011751 146 NARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA---RGFSEYFGCAKAVHVQGRQ 222 (478)
Q Consensus 146 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~---~~~~~~~~~~~~~~~~~~~ 222 (478)
..+.+ .+.+.+|++|||.+. +++.+-++-..........
T Consensus 413 ~l~~~--------------------------------------~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sf 454 (941)
T KOG0351|consen 413 LLRIR--------------------------------------FPGVPFIALTATATERVREDVIRSLGLRNPELFKSSF 454 (941)
T ss_pred HHHhh--------------------------------------CCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccC
Confidence 64421 155789999999943 3566666644433444444
Q ss_pred ccceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHH
Q 011751 223 FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQ 302 (478)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r 302 (478)
.+.+++|...+... ...............+...+||+|.++.+|+.++..|++. ++....||+||+..+|
T Consensus 455 nR~NL~yeV~~k~~-~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~---------~~~a~~YHAGl~~~~R 524 (941)
T KOG0351|consen 455 NRPNLKYEVSPKTD-KDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSL---------GKSAAFYHAGLPPKER 524 (941)
T ss_pred CCCCceEEEEeccC-ccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHh---------chhhHhhhcCCCHHHH
Confidence 44555554444332 1222333334444566889999999999999999999987 7889999999999999
Q ss_pred HhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEE
Q 011751 303 MRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCF 381 (478)
Q Consensus 303 ~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~ 381 (478)
..|...|-.++.+|+|||=++.+|||.|||+.||+++ .|.|.+.|.|-+|||||.| +..|.
T Consensus 525 ~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~------------------lPks~E~YYQE~GRAGRDG~~s~C~ 586 (941)
T KOG0351|consen 525 ETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYS------------------LPKSFEGYYQEAGRAGRDGLPSSCV 586 (941)
T ss_pred HHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECC------------------CchhHHHHHHhccccCcCCCcceeE
Confidence 9999999999999999999999999999999999955 4999999999999999999 99999
Q ss_pred EecCHhhHhc
Q 011751 382 RLYPENEFDK 391 (478)
Q Consensus 382 ~l~~~~~~~~ 391 (478)
.+|.-.++..
T Consensus 587 l~y~~~D~~~ 596 (941)
T KOG0351|consen 587 LLYGYADISE 596 (941)
T ss_pred EecchhHHHH
Confidence 9998777765
No 79
>PRK13766 Hef nuclease; Provisional
Probab=99.95 E-value=2.5e-26 Score=248.35 Aligned_cols=108 Identities=26% Similarity=0.487 Sum_probs=97.0
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCC--------CCHHHHHhhcCcCCCCccEEEEecccc
Q 011751 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSS--------LPSEQQMRVFAPAAAGFRKVILATNIA 323 (478)
Q Consensus 252 ~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~--------l~~~~r~~i~~~f~~g~~~vlvaT~~~ 323 (478)
.+++++||||+++..++.+++.|... ++.+..+||. +++.+|..+++.|++|..+|||||+++
T Consensus 363 ~~~~kvlIF~~~~~t~~~L~~~L~~~---------~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~ 433 (773)
T PRK13766 363 NPDSRIIVFTQYRDTAEKIVDLLEKE---------GIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVA 433 (773)
T ss_pred CCCCeEEEEeCcHHHHHHHHHHHHhC---------CCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChh
Confidence 45788999999999999999999664 6666677765 999999999999999999999999999
Q ss_pred ccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCCCCeEEEecCH
Q 011751 324 ETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPE 386 (478)
Q Consensus 324 ~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~ 386 (478)
++|+|+|++++||+ ||+ +.+...|+||+||+||.++|.+|.|+.+
T Consensus 434 ~eGldi~~~~~VI~--------yd~----------~~s~~r~iQR~GR~gR~~~~~v~~l~~~ 478 (773)
T PRK13766 434 EEGLDIPSVDLVIF--------YEP----------VPSEIRSIQRKGRTGRQEEGRVVVLIAK 478 (773)
T ss_pred hcCCCcccCCEEEE--------eCC----------CCCHHHHHHHhcccCcCCCCEEEEEEeC
Confidence 99999999999999 884 6788899999999999999999999953
No 80
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.95 E-value=2.5e-27 Score=220.39 Aligned_cols=303 Identities=17% Similarity=0.151 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHh-cCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcC-------
Q 011751 16 ASVEKRLVEEVR-KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVEL------- 87 (478)
Q Consensus 16 ~~~q~~~~~~l~-~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~------- 87 (478)
++.|++++..+- .+++|.|+.|||+|||.+..+..+.. +...+++.|.-++...+.+.+.+. ....
T Consensus 22 s~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----~gITIV~SPLiALIkDQiDHL~~L-KVp~~SLNSKl 95 (641)
T KOG0352|consen 22 SRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----GGITIVISPLIALIKDQIDHLKRL-KVPCESLNSKL 95 (641)
T ss_pred ChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----CCeEEEehHHHHHHHHHHHHHHhc-CCchhHhcchh
Confidence 468988888765 55799999999999994443333332 236888899999998777665332 1111
Q ss_pred -----------------CCEEEEEEeecccCChhhhHHHHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcc
Q 011751 88 -----------------GQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSK 150 (478)
Q Consensus 88 -----------------~~~vg~~~~~~~~~~~~~~~~~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~ 150 (478)
...+=|...-..-.+....+..-+.+ -.-++++|+||||+.+.|.+.+..-.-.+-..|++
T Consensus 96 St~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~--r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~ 173 (641)
T KOG0352|consen 96 STVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLAN--RDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSV 173 (641)
T ss_pred hHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhh--hceeeeEEechhhhHhhhccccCcchhhhhhHHhh
Confidence 00011110000000000011111221 23478999999999887776554332233333311
Q ss_pred cccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChhHHHhhh---C-CCCeEEeCCccccce
Q 011751 151 SADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYF---G-CAKAVHVQGRQFPVE 226 (478)
Q Consensus 151 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~---~-~~~~~~~~~~~~~~~ 226 (478)
.+++..++++||.+++.-.+.+ . ..|+-.+..+.+.-+
T Consensus 174 --------------------------------------~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~N 215 (641)
T KOG0352|consen 174 --------------------------------------CPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDN 215 (641)
T ss_pred --------------------------------------CCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhh
Confidence 1778899999999665433222 1 223333334334334
Q ss_pred EEecCCCC---cchHHHHHHHHHHhhh---------cCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcc
Q 011751 227 ILYTLYPE---PDYLDATLITIFQVHL---------DEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIF 294 (478)
Q Consensus 227 ~~~~~~~~---~~~~~~~~~~~~~~~~---------~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h 294 (478)
++|-..-. .+-.....+...+... ....|-.||||.|+++||.++-.|... ++....||
T Consensus 216 LFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~---------Gi~A~AYH 286 (641)
T KOG0352|consen 216 LFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIA---------GIPAMAYH 286 (641)
T ss_pred hhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhc---------CcchHHHh
Confidence 33322100 0111111111111111 112466999999999999999999887 99999999
Q ss_pred CCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCC
Q 011751 295 SSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGR 374 (478)
Q Consensus 295 ~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR 374 (478)
+||...||.++.+.+.+++..||+||..+.+|||-|+|++||+ +| .+.+.+-|.|..|||||
T Consensus 287 AGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViH--------W~----------~~qn~AgYYQESGRAGR 348 (641)
T KOG0352|consen 287 AGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIH--------WS----------PSQNLAGYYQESGRAGR 348 (641)
T ss_pred cccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEe--------cC----------chhhhHHHHHhcccccc
Confidence 9999999999999999999999999999999999999999999 66 47788889999999999
Q ss_pred CC-CCeEEEecCHhhHhc
Q 011751 375 EG-PGKCFRLYPENEFDK 391 (478)
Q Consensus 375 ~~-~G~~~~l~~~~~~~~ 391 (478)
.| +..|-..|+.++-+.
T Consensus 349 DGk~SyCRLYYsR~D~~~ 366 (641)
T KOG0352|consen 349 DGKRSYCRLYYSRQDKNA 366 (641)
T ss_pred CCCccceeeeecccchHH
Confidence 99 788888887776555
No 81
>PRK09401 reverse gyrase; Reviewed
Probab=99.95 E-value=4.8e-27 Score=256.59 Aligned_cols=304 Identities=16% Similarity=0.154 Sum_probs=185.0
Q ss_pred HHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCC
Q 011751 6 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGV 85 (478)
Q Consensus 6 ~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~ 85 (478)
+......+.++++|+.+++.+..|++++++||||||||+++..++... ..++.+++++.||++|+.|+.+.+.+...
T Consensus 72 ~f~~~~G~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l--~~~g~~alIL~PTreLa~Qi~~~l~~l~~- 148 (1176)
T PRK09401 72 FFKKKTGSKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYL--AKKGKKSYIIFPTRLLVEQVVEKLEKFGE- 148 (1176)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHH--HhcCCeEEEEeccHHHHHHHHHHHHHHhh-
Confidence 344445568999999999999999999999999999995433222221 12367899999999999999999876544
Q ss_pred cCCCEEEEEEee--------------------cccCChhhhHHHHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHH
Q 011751 86 ELGQRVGYSIRF--------------------DDRTSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQ 145 (478)
Q Consensus 86 ~~~~~vg~~~~~--------------------~~~~~~~~~~~~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~ 145 (478)
..+..+...... +..+.+..++...+......+++++|+||||..-.+
T Consensus 149 ~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~------------ 216 (1176)
T PRK09401 149 KVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKS------------ 216 (1176)
T ss_pred hcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhhc------------
Confidence 223332211111 111223334433333223456999999999941110
Q ss_pred HhhcccccCCCCCCCCCCCchhhhc-cCCC-CCCccccccc----------------cC----CCCCCceEEEEcCCCCh
Q 011751 146 NARSKSADGHSNGNNNNENSDMILD-RGND-TNGINTLKQC----------------QG----RKFAPLKLIIMSASLDA 203 (478)
Q Consensus 146 ~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~-~~~~~~~~~~----------------~~----~~~~~~~~i~lSAT~~~ 203 (478)
+...|.++. .+|. ..+..++..+ .. ....+.|++++|||+++
T Consensus 217 ----------------~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~ 280 (1176)
T PRK09401 217 ----------------SKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRP 280 (1176)
T ss_pred ----------------ccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCc
Confidence 001111111 2221 1111111111 11 11126789999999965
Q ss_pred hHHH-hhhCCCCeEEeCCcc---ccceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHH---HHHHHHHHHH
Q 011751 204 RGFS-EYFGCAKAVHVQGRQ---FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE---IESVERLVQE 276 (478)
Q Consensus 204 ~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~---~~~l~~~l~~ 276 (478)
+.+. .+|.+.-.+.+.... ..+...|...+ +.... +..+.... +.++||||+++.. ++.++..|++
T Consensus 281 ~~~~~~l~~~ll~~~v~~~~~~~rnI~~~yi~~~--~k~~~----L~~ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~ 353 (1176)
T PRK09401 281 RGNRVKLFRELLGFEVGSPVFYLRNIVDSYIVDE--DSVEK----LVELVKRL-GDGGLIFVPSDKGKEYAEELAEYLED 353 (1176)
T ss_pred cchHHHHhhccceEEecCcccccCCceEEEEEcc--cHHHH----HHHHHHhc-CCCEEEEEecccChHHHHHHHHHHHH
Confidence 4222 223222123332221 23444444322 22222 22222222 4579999999777 9999999988
Q ss_pred HHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEe----ccccccccccCC-eEEEEeCCcccceeecCCCC
Q 011751 277 RLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILA----TNIAETSVTIPG-IKYVIDPGFVKARLYDPVKG 351 (478)
Q Consensus 277 ~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlva----T~~~~~Gvdip~-v~~VI~~g~~~~~~yd~~~~ 351 (478)
. ++.+..+||+| ++ .++.|++|+.+|||| ||+++||+|+|+ |++||++|.++.+.
T Consensus 354 ~---------gi~v~~~hg~l----~~-~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~------ 413 (1176)
T PRK09401 354 L---------GINAELAISGF----ER-KFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKF------ 413 (1176)
T ss_pred C---------CCcEEEEeCcH----HH-HHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEE------
Confidence 6 89999999999 22 349999999999999 699999999999 89999966654331
Q ss_pred cccceeeecCHHHHHHhhcccC
Q 011751 352 MESLLVVPISKAQALQRSGRAG 373 (478)
Q Consensus 352 ~~~~~~~~~s~~~~~Qr~GRaG 373 (478)
.......+.||.||+-
T Consensus 414 ------~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 414 ------SLEEELAPPFLLLRLL 429 (1176)
T ss_pred ------eccccccCHHHHHHHH
Confidence 0113455788888873
No 82
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=5.7e-28 Score=224.43 Aligned_cols=311 Identities=18% Similarity=0.243 Sum_probs=216.6
Q ss_pred hHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhH--HHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHH
Q 011751 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQ--LPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (478)
Q Consensus 5 ~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~--~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~ 82 (478)
+.......-.++|+|++-++.++++++++-.|-||||||.. +|.+-........+.+.+++.|++.|+.|..+-+.+.
T Consensus 34 raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdl 113 (529)
T KOG0337|consen 34 RAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDL 113 (529)
T ss_pred HHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHh
Confidence 33344445568999999999999999999999999999944 4444433333344778999999999999998866433
Q ss_pred hC---CcCCCEEEEEE----------eecccCChhhhHHHHhhC--cCcCCCcceEeecccccchhhhHHHHHHHHHHHh
Q 011751 83 SG---VELGQRVGYSI----------RFDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNA 147 (478)
Q Consensus 83 ~~---~~~~~~vg~~~----------~~~~~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~ 147 (478)
-. ......+|+.- ..+....+..++..+..+ ..++.+.+||+||+
T Consensus 114 grgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEa-------------------- 173 (529)
T KOG0337|consen 114 GRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEA-------------------- 173 (529)
T ss_pred ccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhh--------------------
Confidence 21 11111222110 001111122222222211 34788999999999
Q ss_pred hcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChh--HHHhhhCCCC-eEEeC--Ccc
Q 011751 148 RSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--GFSEYFGCAK-AVHVQ--GRQ 222 (478)
Q Consensus 148 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~--~~~~~~~~~~-~~~~~--~~~ 222 (478)
|.++.+++.+++-+++.+++ .+.|.++||||++.. ++++-=-.+| .+.++ ...
T Consensus 174 ------------------drlfemgfqeql~e~l~rl~----~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetki 231 (529)
T KOG0337|consen 174 ------------------DRLFEMGFQEQLHEILSRLP----ESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKI 231 (529)
T ss_pred ------------------hHHHhhhhHHHHHHHHHhCC----CcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhc
Confidence 58888888888888888888 556999999999543 4443211122 22211 111
Q ss_pred -ccceEEecCCCCcchHHHHHHHHHHhhhc-CCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHH
Q 011751 223 -FPVEILYTLYPEPDYLDATLITIFQVHLD-EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSE 300 (478)
Q Consensus 223 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~ 300 (478)
..++..+......+ ....++++... ....+++||++|+.+++-+...|++. ++.+..++|.|+++
T Consensus 232 se~lk~~f~~~~~a~----K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~---------g~~~s~iysslD~~ 298 (529)
T KOG0337|consen 232 SELLKVRFFRVRKAE----KEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDF---------GGEGSDIYSSLDQE 298 (529)
T ss_pred chhhhhheeeeccHH----HHHHHHHHHhccccccceeEEecccchHHHHHHHHHhc---------CCCccccccccChH
Confidence 11122222222211 22223333222 22457999999999999999999887 88888899999999
Q ss_pred HHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCe
Q 011751 301 QQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGK 379 (478)
Q Consensus 301 ~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~ 379 (478)
-|..-...|+.++..++|.||++++|+|+|-.+-||| || .|.+..-|+||+||+.|.| .|.
T Consensus 299 aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvin--------yd----------~p~~~klFvhRVgr~aragrtg~ 360 (529)
T KOG0337|consen 299 ARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVIN--------YD----------FPPDDKLFVHRVGRVARAGRTGR 360 (529)
T ss_pred hhhhccccccCCccceEEEehhhhccCCCcccccccc--------cc----------CCCCCceEEEEecchhhccccce
Confidence 9999999999999999999999999999999999999 88 5777888999999999999 899
Q ss_pred EEEecCHhh
Q 011751 380 CFRLYPENE 388 (478)
Q Consensus 380 ~~~l~~~~~ 388 (478)
+|.++..++
T Consensus 361 aYs~V~~~~ 369 (529)
T KOG0337|consen 361 AYSLVASTD 369 (529)
T ss_pred EEEEEeccc
Confidence 999986543
No 83
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.95 E-value=2.8e-27 Score=240.41 Aligned_cols=321 Identities=20% Similarity=0.238 Sum_probs=207.9
Q ss_pred cCCcHHHHHHHH--HHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCC
Q 011751 12 SLPIASVEKRLV--EEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ 89 (478)
Q Consensus 12 ~~~~~~~q~~~~--~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~ 89 (478)
....+.+|.+.+ ..++++++.+...||++|||.+....++....... +.++.+.|....+..-...+..+ ..+.|.
T Consensus 221 i~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~r-r~~llilp~vsiv~Ek~~~l~~~-~~~~G~ 298 (1008)
T KOG0950|consen 221 ILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRR-RNVLLILPYVSIVQEKISALSPF-SIDLGF 298 (1008)
T ss_pred HHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHh-hceeEecceeehhHHHHhhhhhh-ccccCC
Confidence 345677888875 45779999999999999999888777766554433 34555566666665554444322 222332
Q ss_pred EEE-EEEeecc-------------cCChhhhHHHHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccCC
Q 011751 90 RVG-YSIRFDD-------------RTSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGH 155 (478)
Q Consensus 90 ~vg-~~~~~~~-------------~~~~~~~~~~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~~ 155 (478)
.+. |...+.. .....+.+..++....+..++.||+||.|
T Consensus 299 ~ve~y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElh--------------------------- 351 (1008)
T KOG0950|consen 299 PVEEYAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELH--------------------------- 351 (1008)
T ss_pred cchhhcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeee---------------------------
Confidence 221 1101100 00111122244555678889999999999
Q ss_pred CCCCCCCCCchhhhccCCCCCCcccccccc-CCCCCCceEEEEcCCC-ChhHHHhhhCCCCeEEeCCccccceEEecCCC
Q 011751 156 SNGNNNNENSDMILDRGNDTNGINTLKQCQ-GRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQFPVEILYTLYP 233 (478)
Q Consensus 156 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~lSAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (478)
+++|.++|..++.++.++. ......+|+|+||||+ |.+.+++|+... ....+..|+.+.-...+
T Consensus 352 -----------mi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~A~---~y~t~fRPv~L~E~ik~ 417 (1008)
T KOG0950|consen 352 -----------MIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNNSLLQDWLDAF---VYTTRFRPVPLKEYIKP 417 (1008)
T ss_pred -----------eeeccccchHHHHHHHHHHHhccccceeEeeeecccCChHHHHHHhhhh---heecccCcccchhccCC
Confidence 4444444444444443332 1111347899999999 999999999743 33344445544332232
Q ss_pred CcchHHH----HHHHHHH-----------------hhhc-CCCCCEEEEcCCHHHHHHHHHHHHHHHhc-----------
Q 011751 234 EPDYLDA----TLITIFQ-----------------VHLD-EAPGDILVFLTGQEEIESVERLVQERLLQ----------- 280 (478)
Q Consensus 234 ~~~~~~~----~~~~~~~-----------------~~~~-~~~~~~LVF~~s~~~~~~l~~~l~~~~~~----------- 280 (478)
.....+. .+..+.. +... .++.++|||||++..|+.++..+......
T Consensus 418 G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~ 497 (1008)
T KOG0950|consen 418 GSLIYESSRNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLW 497 (1008)
T ss_pred CcccccchhhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHH
Confidence 2211111 1111110 0011 12445999999999999999777655331
Q ss_pred -----------CC-------CCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCccc
Q 011751 281 -----------LP-------EASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVK 342 (478)
Q Consensus 281 -----------~~-------~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~ 342 (478)
.+ .....+.++.+|+|++.++|+.++..|++|-..|++||++++.|+|.|+.+|+|-.-+
T Consensus 498 ~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~-- 575 (1008)
T KOG0950|consen 498 ELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPY-- 575 (1008)
T ss_pred HHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCc--
Confidence 00 1233457888999999999999999999999999999999999999999999996333
Q ss_pred ceeecCCCCcccceeeecCHHHHHHhhcccCCCC---CCeEEEecCHhhH
Q 011751 343 ARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPENEF 389 (478)
Q Consensus 343 ~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~ 389 (478)
+ .....+..+|.||+|||||+| -|.++.++.+.+.
T Consensus 576 ---~---------g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~ 613 (1008)
T KOG0950|consen 576 ---V---------GREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEK 613 (1008)
T ss_pred ---c---------ccchhhhhhHHhhhhhhhhcccccCcceEEEeeccch
Confidence 1 223577889999999999999 7999999976654
No 84
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=1.7e-25 Score=230.21 Aligned_cols=292 Identities=15% Similarity=0.155 Sum_probs=179.4
Q ss_pred hcCCcHHHHHHHHHHHhc-C--CEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcC
Q 011751 11 KSLPIASVEKRLVEEVRK-N--DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVEL 87 (478)
Q Consensus 11 ~~~~~~~~q~~~~~~l~~-~--~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~ 87 (478)
..+.++++|++++..+.. | +.-+|+.|||+|||.+...++... +..++|++|+..++.|..+.+.+......
T Consensus 252 ~~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l-----~k~tLILvps~~Lv~QW~~ef~~~~~l~~ 326 (732)
T TIGR00603 252 PTTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV-----KKSCLVLCTSAVSVEQWKQQFKMWSTIDD 326 (732)
T ss_pred cCCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh-----CCCEEEEeCcHHHHHHHHHHHHHhcCCCC
Confidence 346689999999999764 3 368999999999996665554433 34688999999999999998887754332
Q ss_pred CCEEEEEEeec---------ccCChhhhHH----------HHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhh
Q 011751 88 GQRVGYSIRFD---------DRTSTSTRIK----------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (478)
Q Consensus 88 ~~~vg~~~~~~---------~~~~~~~~~~----------~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~ 148 (478)
. .++...... ..+++...+. ..+....-..++++|+||||.-. +.. ++++...
T Consensus 327 ~-~I~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp--A~~----fr~il~~- 398 (732)
T TIGR00603 327 S-QICRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP--AAM----FRRVLTI- 398 (732)
T ss_pred c-eEEEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc--HHH----HHHHHHh-
Confidence 2 222111100 0011111111 01111112468899999999532 111 1111111
Q ss_pred cccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC--Chh---HHHhhhCCCCeEEeC----
Q 011751 149 SKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DAR---GFSEYFGCAKAVHVQ---- 219 (478)
Q Consensus 149 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~--~~~---~~~~~~~~~~~~~~~---- 219 (478)
+ .....++||||+ +-+ .+..++| +.++..+
T Consensus 399 -----------------------------------l-----~a~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eL 437 (732)
T TIGR00603 399 -----------------------------------V-----QAHCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMEL 437 (732)
T ss_pred -----------------------------------c-----CcCcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHH
Confidence 0 223579999999 112 2222333 3332221
Q ss_pred ---CccccceE--EecCCCCcc---hHH--------------HHHHH---HHHhhhcCCCCCEEEEcCCHHHHHHHHHHH
Q 011751 220 ---GRQFPVEI--LYTLYPEPD---YLD--------------ATLIT---IFQVHLDEAPGDILVFLTGQEEIESVERLV 274 (478)
Q Consensus 220 ---~~~~~~~~--~~~~~~~~~---~~~--------------~~~~~---~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l 274 (478)
+...++.. .+....... |+. ..+.. ++..+. ..+.++||||.+...++.+++.|
T Consensus 438 i~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he-~~g~kiLVF~~~~~~l~~~a~~L 516 (732)
T TIGR00603 438 QKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHE-QRGDKIIVFSDNVFALKEYAIKL 516 (732)
T ss_pred HhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHh-hcCCeEEEEeCCHHHHHHHHHHc
Confidence 22222221 111111100 000 01111 222222 35779999999998888777765
Q ss_pred HHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCC-ccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcc
Q 011751 275 QERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG-FRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGME 353 (478)
Q Consensus 275 ~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g-~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~ 353 (478)
+ +..+||++++.+|.++++.|+.| ..++||+|+++.+|+|+|++++||+ +++.
T Consensus 517 ------------~--~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~--------~s~~---- 570 (732)
T TIGR00603 517 ------------G--KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQ--------ISSH---- 570 (732)
T ss_pred ------------C--CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEE--------eCCC----
Confidence 2 23479999999999999999865 7899999999999999999999998 5521
Q ss_pred cceeeecCHHHHHHhhcccCCCC-CCeE-------EEecCHhh
Q 011751 354 SLLVVPISKAQALQRSGRAGREG-PGKC-------FRLYPENE 388 (478)
Q Consensus 354 ~~~~~~~s~~~~~Qr~GRaGR~~-~G~~-------~~l~~~~~ 388 (478)
+.|..+|+||+||++|.+ .|.+ |.|++++.
T Consensus 571 -----~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT 608 (732)
T TIGR00603 571 -----YGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDT 608 (732)
T ss_pred -----CCCHHHHHHHhcccccCCCCCccccccceEEEEecCCc
Confidence 248899999999999998 3443 77886543
No 85
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=3.7e-25 Score=225.26 Aligned_cols=164 Identities=20% Similarity=0.202 Sum_probs=117.3
Q ss_pred eEEEEcCCC--ChhHHHhhhCCCCeEEeCCccccceEE---ecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHH
Q 011751 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEIL---YTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEI 267 (478)
Q Consensus 193 ~~i~lSAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~ 267 (478)
++.+||||. ..+++.++++-. ++.++...-..... +......+........+...+ ..+.++||||+|.+.+
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~-vv~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~--~~~~pvLIft~t~~~s 486 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLP-VVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELH--AQGRPVLVGTRSVAAS 486 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCC-eEEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHH
Confidence 578999999 445677777655 34444322111111 111122222333233222222 2357899999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccC---CeE-----EEEeCC
Q 011751 268 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIP---GIK-----YVIDPG 339 (478)
Q Consensus 268 ~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip---~v~-----~VI~~g 339 (478)
+.++..|.+. ++.+..+||.+...++..+...+. ..+|+||||++++|+||+ +|. +||+
T Consensus 487 e~L~~~L~~~---------gi~~~~Lhg~~~~rE~~ii~~ag~--~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~-- 553 (656)
T PRK12898 487 ERLSALLREA---------GLPHQVLNAKQDAEEAAIVARAGQ--RGRITVATNMAGRGTDIKLEPGVAARGGLHVIL-- 553 (656)
T ss_pred HHHHHHHHHC---------CCCEEEeeCCcHHHHHHHHHHcCC--CCcEEEEccchhcccCcCCccchhhcCCCEEEE--
Confidence 9999999886 889999999977666655555544 446999999999999999 776 9999
Q ss_pred cccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEEecCHhh
Q 011751 340 FVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENE 388 (478)
Q Consensus 340 ~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 388 (478)
|| .|.|...|.||+|||||.| +|.++.+++.++
T Consensus 554 ------~d----------~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 554 ------TE----------RHDSARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred ------cC----------CCCCHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 76 6899999999999999999 999999998654
No 86
>PRK09694 helicase Cas3; Provisional
Probab=99.94 E-value=2.3e-25 Score=235.56 Aligned_cols=293 Identities=16% Similarity=0.153 Sum_probs=174.6
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcC-CCE
Q 011751 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVEL-GQR 90 (478)
Q Consensus 12 ~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~-~~~ 90 (478)
.+.++++|+.+......+..++|.||||+|||..+..++...........+++..|++++++++++++.+...... ...
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~ 363 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPSPN 363 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4578999998865544577899999999999966544443222222345799999999999999999865221110 011
Q ss_pred EEEEEeec-------c-------c----------------------------CChhhhHHHHhhC--cCcCC----Ccce
Q 011751 91 VGYSIRFD-------D-------R----------------------------TSTSTRIKEALLD--PYLSR----YSAI 122 (478)
Q Consensus 91 vg~~~~~~-------~-------~----------------------------~~~~~~~~~~l~~--~~l~~----~~~l 122 (478)
++...+.. . . .+....+...+.. ..+.. -++|
T Consensus 364 v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svv 443 (878)
T PRK09694 364 LILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVL 443 (878)
T ss_pred eEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeE
Confidence 11110000 0 0 0000000011110 01111 3589
Q ss_pred EeecccccchhhhHHHH-HHHHHHHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC
Q 011751 123 IVDEAHERTVHTDVLLG-LLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL 201 (478)
Q Consensus 123 IiDE~H~r~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~ 201 (478)
||||+|..+.++..++. +++.+.. ...++|+||||+
T Consensus 444 IiDEVHAyD~ym~~lL~~~L~~l~~-------------------------------------------~g~~vIllSATL 480 (878)
T PRK09694 444 IVDEVHAYDAYMYGLLEAVLKAQAQ-------------------------------------------AGGSVILLSATL 480 (878)
T ss_pred EEechhhCCHHHHHHHHHHHHHHHh-------------------------------------------cCCcEEEEeCCC
Confidence 99999988776655444 3333221 345799999999
Q ss_pred ChhHHHhh---hCCC---------CeEEeCCc----c-------------ccceEEecCCCCcchHHHHHHHHHHhhhcC
Q 011751 202 DARGFSEY---FGCA---------KAVHVQGR----Q-------------FPVEILYTLYPEPDYLDATLITIFQVHLDE 252 (478)
Q Consensus 202 ~~~~~~~~---~~~~---------~~~~~~~~----~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (478)
+.....++ ++.. |.+..... . ..+.+..............+..+.... .
T Consensus 481 P~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~--~ 558 (878)
T PRK09694 481 PATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA--N 558 (878)
T ss_pred CHHHHHHHHHHhccccccccccccccccccccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHH--h
Confidence 65433322 2221 11110000 0 001111110010011122333333322 3
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHH----hhcCcC-CCCc---cEEEEeccccc
Q 011751 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQM----RVFAPA-AAGF---RKVILATNIAE 324 (478)
Q Consensus 253 ~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~----~i~~~f-~~g~---~~vlvaT~~~~ 324 (478)
.++++||||||.+.++++++.|++... ....+..+||+++..+|. ++++.| ++|+ .+|||||+++|
T Consensus 559 ~g~~vLVf~NTV~~Aq~ly~~L~~~~~------~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE 632 (878)
T PRK09694 559 AGAQVCLICNLVDDAQKLYQRLKELNN------TQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVE 632 (878)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhhCC------CCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchh
Confidence 478899999999999999999987521 135788999999999994 456677 6665 47999999999
Q ss_pred cccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC
Q 011751 325 TSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG 376 (478)
Q Consensus 325 ~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~ 376 (478)
+|+|+ +++++|. . ..+.++++||+||+||.+
T Consensus 633 ~GLDI-d~DvlIt--------d------------laPidsLiQRaGR~~R~~ 663 (878)
T PRK09694 633 QSLDL-DFDWLIT--------Q------------LCPVDLLFQRLGRLHRHH 663 (878)
T ss_pred heeec-CCCeEEE--------C------------CCCHHHHHHHHhccCCCC
Confidence 99999 6788885 1 234689999999999987
No 87
>PRK14701 reverse gyrase; Provisional
Probab=99.94 E-value=3.2e-26 Score=255.29 Aligned_cols=324 Identities=16% Similarity=0.134 Sum_probs=192.2
Q ss_pred hHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhC
Q 011751 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (478)
Q Consensus 5 ~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (478)
++++....+.++++|+++++.+..|++++++||||||||++...+.... ..++..++++.|+++|+.|+.+.+.....
T Consensus 70 ~~f~~~~G~~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~--~~~g~~aLVl~PTreLa~Qi~~~l~~l~~ 147 (1638)
T PRK14701 70 EFFEKITGFEFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFL--ALKGKKCYIILPTTLLVKQTVEKIESFCE 147 (1638)
T ss_pred HHHHHhhCCCCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHH--HhcCCeEEEEECHHHHHHHHHHHHHHHHh
Confidence 3344434558999999999999999999999999999996322222221 12356799999999999999998876443
Q ss_pred Cc-CCCEEEEEEeecc------------------cCChhhhHHHHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHH
Q 011751 85 VE-LGQRVGYSIRFDD------------------RTSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQ 145 (478)
Q Consensus 85 ~~-~~~~vg~~~~~~~------------------~~~~~~~~~~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~ 145 (478)
.. .+..+.+..+... ...+..++...+......+++++|+||||+...+
T Consensus 148 ~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~~------------ 215 (1638)
T PRK14701 148 KANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLKA------------ 215 (1638)
T ss_pred hcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceecccc------------
Confidence 11 1222222111100 0111112221111111257899999999953221
Q ss_pred HhhcccccCCCCCCCCCCCchhhhc-cCCCCCCcc----c------------------cccccCCCCCCce-EEEEcCCC
Q 011751 146 NARSKSADGHSNGNNNNENSDMILD-RGNDTNGIN----T------------------LKQCQGRKFAPLK-LIIMSASL 201 (478)
Q Consensus 146 ~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~----~------------------~~~~~~~~~~~~~-~i~lSAT~ 201 (478)
|.+.|.+++ .+|.+...+ + +...........+ ++++|||+
T Consensus 216 ----------------~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~ 279 (1638)
T PRK14701 216 ----------------SKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATG 279 (1638)
T ss_pred ----------------ccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCC
Confidence 111222222 122222111 0 0000001112334 67799999
Q ss_pred Ch-hHHHhhhCCCCeEEeCCcc---ccceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHH---HHHHHHHH
Q 011751 202 DA-RGFSEYFGCAKAVHVQGRQ---FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE---IESVERLV 274 (478)
Q Consensus 202 ~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~---~~~l~~~l 274 (478)
++ ....+++...-.+.+.... ..+...|...... ... .+..+.... +.++||||++++. ++.++..|
T Consensus 280 ~~r~~~~~l~~~~l~f~v~~~~~~lr~i~~~yi~~~~~-~k~----~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L 353 (1638)
T PRK14701 280 KAKGDRVKLYRELLGFEVGSGRSALRNIVDVYLNPEKI-IKE----HVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYL 353 (1638)
T ss_pred CchhHHHHHhhcCeEEEecCCCCCCCCcEEEEEECCHH-HHH----HHHHHHHhC-CCCeEEEEeccccchHHHHHHHHH
Confidence 65 3455666544444444332 1233333322211 112 222332222 4679999999876 48889999
Q ss_pred HHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEec----cccccccccCC-eEEEEeCCcccce----e
Q 011751 275 QERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILAT----NIAETSVTIPG-IKYVIDPGFVKAR----L 345 (478)
Q Consensus 275 ~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT----~~~~~Gvdip~-v~~VI~~g~~~~~----~ 345 (478)
.+. ++.+..+||+ |..+++.|++|+.+||||| ++++||||+|+ |+|||++|.++.+ .
T Consensus 354 ~~~---------Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~ 419 (1638)
T PRK14701 354 LED---------GFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDL 419 (1638)
T ss_pred HHC---------CCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhh
Confidence 886 8999999995 8889999999999999999 59999999999 9999997766632 1
Q ss_pred ecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEEec
Q 011751 346 YDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLY 384 (478)
Q Consensus 346 yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~ 384 (478)
|++.... .+. .....++.|||||.| ++.++..+
T Consensus 420 ~~~~~~~-----~~~-~~~~~~~~~~a~~~g~~~~~~~~~ 453 (1638)
T PRK14701 420 EDPTIYR-----ILG-LLSEILKIEEELKEGIPIEGVLDV 453 (1638)
T ss_pred cccchhh-----hhc-chHHHHHhhhhcccCCcchhHHHh
Confidence 1111100 000 233566789999999 77776444
No 88
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.94 E-value=7.5e-26 Score=225.22 Aligned_cols=300 Identities=18% Similarity=0.220 Sum_probs=209.9
Q ss_pred hhhcCCcHHHHHHHHHHHhcC------CEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHH
Q 011751 9 QRKSLPIASVEKRLVEEVRKN------DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (478)
Q Consensus 9 ~~~~~~~~~~q~~~~~~l~~~------~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~ 82 (478)
..-.|.++..|++++..|..+ .+=+++|.-|||||.++...++.... .|..+.+++||..||.|.+..+.+.
T Consensus 257 ~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~--~G~Q~ALMAPTEILA~QH~~~~~~~ 334 (677)
T COG1200 257 AALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE--AGYQAALMAPTEILAEQHYESLRKW 334 (677)
T ss_pred HhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH--cCCeeEEeccHHHHHHHHHHHHHHH
Confidence 345677899999999999866 24589999999999776666655432 2567889999999999999998887
Q ss_pred hCCcCCCEEEEEEeecccCChhhhHH--------------HHhh-CcCcCCCcceEeecccccchhhhHHHHHHHHHHHh
Q 011751 83 SGVELGQRVGYSIRFDDRTSTSTRIK--------------EALL-DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNA 147 (478)
Q Consensus 83 ~~~~~~~~vg~~~~~~~~~~~~~~~~--------------~~l~-~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~ 147 (478)
+. +.+..|++-.+..........+. .++. +-.+.++.++|+||=|-..+.--.
T Consensus 335 l~-~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVIiDEQHRFGV~QR~----------- 402 (677)
T COG1200 335 LE-PLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVIIDEQHRFGVHQRL----------- 402 (677)
T ss_pred hh-hcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEEEeccccccHHHHH-----------
Confidence 76 34555665432221111111121 1222 234889999999999932222111
Q ss_pred hcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCC-CceEEEEcCCCChhHHH-hhhCCCCeEEeCC---cc
Q 011751 148 RSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFA-PLKLIIMSASLDARGFS-EYFGCAKAVHVQG---RQ 222 (478)
Q Consensus 148 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~lSAT~~~~~~~-~~~~~~~~~~~~~---~~ 222 (478)
.+.+.+ . .+.++.||||+=+..++ ..||+-.+-.+++ ..
T Consensus 403 -------------------~L~~KG-----------------~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GR 446 (677)
T COG1200 403 -------------------ALREKG-----------------EQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGR 446 (677)
T ss_pred -------------------HHHHhC-----------------CCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCC
Confidence 111111 2 46799999999666665 6677665544443 33
Q ss_pred ccceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHH--------HHHHHHHHHHHhcCCCCCCCeEEEEcc
Q 011751 223 FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEI--------ESVERLVQERLLQLPEASRKLVTVPIF 294 (478)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~--------~~l~~~l~~~~~~~~~~~~~~~v~~~h 294 (478)
-|+......... ....+..+..... .+.++.|-||-.++- ++++..|...+ +++.+..+|
T Consensus 447 kpI~T~~i~~~~---~~~v~e~i~~ei~--~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~-------~~~~vgL~H 514 (677)
T COG1200 447 KPITTVVIPHER---RPEVYERIREEIA--KGRQAYVVCPLIEESEKLELQAAEELYEELKSFL-------PELKVGLVH 514 (677)
T ss_pred CceEEEEecccc---HHHHHHHHHHHHH--cCCEEEEEeccccccccchhhhHHHHHHHHHHHc-------ccceeEEEe
Confidence 456655555433 2333334433333 488899999976544 45555555433 377899999
Q ss_pred CCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCC
Q 011751 295 SSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGR 374 (478)
Q Consensus 295 ~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR 374 (478)
|.|+.++++++++.|++|+.+|||||++.|-|||+|+.++.|- +|+.+ .-.++..|-.||+||
T Consensus 515 Grm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVI--------e~AER---------FGLaQLHQLRGRVGR 577 (677)
T COG1200 515 GRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVI--------ENAER---------FGLAQLHQLRGRVGR 577 (677)
T ss_pred cCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEE--------echhh---------hhHHHHHHhccccCC
Confidence 9999999999999999999999999999999999999999876 66533 456789999999999
Q ss_pred CC-CCeEEEecCHh
Q 011751 375 EG-PGKCFRLYPEN 387 (478)
Q Consensus 375 ~~-~G~~~~l~~~~ 387 (478)
.+ .+.|+.++.+.
T Consensus 578 G~~qSyC~Ll~~~~ 591 (677)
T COG1200 578 GDLQSYCVLLYKPP 591 (677)
T ss_pred CCcceEEEEEeCCC
Confidence 99 99999999543
No 89
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.94 E-value=3.1e-25 Score=232.88 Aligned_cols=310 Identities=20% Similarity=0.170 Sum_probs=194.7
Q ss_pred cCCcHHHHHHHHHHHhcC---CEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCC
Q 011751 12 SLPIASVEKRLVEEVRKN---DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELG 88 (478)
Q Consensus 12 ~~~~~~~q~~~~~~l~~~---~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~ 88 (478)
.+.+++.|++++..+.++ +++++.|+||||||.++..++..... .+..++++.|+++++.|+.+++.+.++..
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~--~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~-- 217 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA--QGKQALVLVPEIALTPQMLARFRARFGAP-- 217 (679)
T ss_pred CCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH--cCCeEEEEeCcHHHHHHHHHHHHHHhCCC--
Confidence 345789999999999874 78999999999999666555443322 25689999999999999999998876643
Q ss_pred CEEEEEEeecccCChhhhHHHHh---h-------------CcCcCCCcceEeecccccchhhhHHHHH-HHHHHHhhccc
Q 011751 89 QRVGYSIRFDDRTSTSTRIKEAL---L-------------DPYLSRYSAIIVDEAHERTVHTDVLLGL-LKKVQNARSKS 151 (478)
Q Consensus 89 ~~vg~~~~~~~~~~~~~~~~~~l---~-------------~~~l~~~~~lIiDE~H~r~~~~~~~l~~-l~~~~~~~~~~ 151 (478)
+.. ..+..+...+...|. . -..+.+++++|+||+|+.+...+.-..+ .+.+...+.
T Consensus 218 --v~~---~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra-- 290 (679)
T PRK05580 218 --VAV---LHSGLSDGERLDEWRKAKRGEAKVVIGARSALFLPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRA-- 290 (679)
T ss_pred --EEE---EECCCCHHHHHHHHHHHHcCCCCEEEeccHHhcccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHh--
Confidence 221 122222222222111 0 0236789999999999644332211000 111111110
Q ss_pred ccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChhHHHhhh-CCCCeEEeCCccc---cceE
Q 011751 152 ADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYF-GCAKAVHVQGRQF---PVEI 227 (478)
Q Consensus 152 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~-~~~~~~~~~~~~~---~~~~ 227 (478)
...+.++|++|||+..+.+.... |....+....+.. ...+
T Consensus 291 ------------------------------------~~~~~~~il~SATps~~s~~~~~~g~~~~~~l~~r~~~~~~p~v 334 (679)
T PRK05580 291 ------------------------------------KLENIPVVLGSATPSLESLANAQQGRYRLLRLTKRAGGARLPEV 334 (679)
T ss_pred ------------------------------------hccCCCEEEEcCCCCHHHHHHHhccceeEEEeccccccCCCCeE
Confidence 01567999999999888776543 2223333333321 1111
Q ss_pred EecCCCC-------cchHHHHHHHHHHhhhcCCCCCEEEEcCCHH-----------------------------------
Q 011751 228 LYTLYPE-------PDYLDATLITIFQVHLDEAPGDILVFLTGQE----------------------------------- 265 (478)
Q Consensus 228 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~----------------------------------- 265 (478)
....... .......+..+.+.. +.+.++|||+|.+.
T Consensus 335 ~~id~~~~~~~~~~~~ls~~l~~~i~~~l--~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch 412 (679)
T PRK05580 335 EIIDMRELLRGENGSFLSPPLLEAIKQRL--ERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCH 412 (679)
T ss_pred EEEechhhhhhcccCCCCHHHHHHHHHHH--HcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECC
Confidence 1111100 001122222232222 23668999988632
Q ss_pred -------------------------HHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCH--HHHHhhcCcCCCCccEEEE
Q 011751 266 -------------------------EIESVERLVQERLLQLPEASRKLVTVPIFSSLPS--EQQMRVFAPAAAGFRKVIL 318 (478)
Q Consensus 266 -------------------------~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~--~~r~~i~~~f~~g~~~vlv 318 (478)
.++++++.|.+.+. +..+..+|+++.+ ++++++++.|++|+.+|||
T Consensus 413 ~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp-------~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILV 485 (679)
T PRK05580 413 HCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELFP-------EARILRIDRDTTRRKGALEQLLAQFARGEADILI 485 (679)
T ss_pred CCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCC-------CCcEEEEeccccccchhHHHHHHHHhcCCCCEEE
Confidence 45566666665543 6678899999874 5789999999999999999
Q ss_pred eccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEEe
Q 011751 319 ATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRL 383 (478)
Q Consensus 319 aT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l 383 (478)
+|+++++|+|+|+|+.|+-.. +|.....+++...-.....+.|++|||||.+ .|.++..
T Consensus 486 gT~~iakG~d~p~v~lV~il~------aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiq 545 (679)
T PRK05580 486 GTQMLAKGHDFPNVTLVGVLD------ADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQ 545 (679)
T ss_pred EChhhccCCCCCCcCEEEEEc------CchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEE
Confidence 999999999999999985311 4433344444333445678999999999977 8988853
No 90
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.93 E-value=2.4e-24 Score=221.82 Aligned_cols=161 Identities=22% Similarity=0.262 Sum_probs=118.1
Q ss_pred eEEEEcCCC--ChhHHHhhhCCCCeEEeCCccccceEEecCC----CCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHH
Q 011751 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILYTLY----PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE 266 (478)
Q Consensus 193 ~~i~lSAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~ 266 (478)
++.+||.|. ..++|.+.++ ..++.+|... |+.....+. ...+.....+..+...+ ..+.++||||+|.+.
T Consensus 361 kl~GmTGTa~~~~~Ef~~iY~-l~v~~IPt~k-p~~r~d~~d~i~~~~~~K~~ai~~~i~~~~--~~~~pvLIft~s~~~ 436 (762)
T TIGR03714 361 KLSGMTGTGKVAEKEFIETYS-LSVVKIPTNK-PIIRIDYPDKIYATLPEKLMATLEDVKEYH--ETGQPVLLITGSVEM 436 (762)
T ss_pred hhcccCCCChhHHHHHHHHhC-CCEEEcCCCC-CeeeeeCCCeEEECHHHHHHHHHHHHHHHh--hCCCCEEEEECcHHH
Confidence 678999998 3456666554 4455555432 221111111 11122233333333332 447889999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccC---------CeEEEEe
Q 011751 267 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIP---------GIKYVID 337 (478)
Q Consensus 267 ~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip---------~v~~VI~ 337 (478)
++.++..|.+. ++.+..+||.+.+.++..+...++.| +|+||||+++||+||| ++.+|++
T Consensus 437 se~ls~~L~~~---------gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit 505 (762)
T TIGR03714 437 SEIYSELLLRE---------GIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGT 505 (762)
T ss_pred HHHHHHHHHHC---------CCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEe
Confidence 99999999886 88899999999999998888888777 7999999999999999 9999998
Q ss_pred CCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEEecCHh
Q 011751 338 PGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPEN 387 (478)
Q Consensus 338 ~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~ 387 (478)
|+ .|.... ..||+|||||.| +|.++.+++.+
T Consensus 506 --------~~----------~ps~ri-d~qr~GRtGRqG~~G~s~~~is~e 537 (762)
T TIGR03714 506 --------ER----------MENSRV-DLQLRGRSGRQGDPGSSQFFVSLE 537 (762)
T ss_pred --------cC----------CCCcHH-HHHhhhcccCCCCceeEEEEEccc
Confidence 77 244444 499999999999 99999998754
No 91
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=1.6e-24 Score=225.18 Aligned_cols=162 Identities=22% Similarity=0.278 Sum_probs=120.4
Q ss_pred eEEEEcCCC--ChhHHHhhhCCCCeEEeCCccccceEEecCC----CCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHH
Q 011751 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILYTLY----PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE 266 (478)
Q Consensus 193 ~~i~lSAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~ 266 (478)
++.+||.|. ..++|.+.++ .+++.+|.. .|........ ...+.....+..+...+ ..+.++||||+|.+.
T Consensus 365 kl~GmTGTa~t~~~e~~~~Y~-l~v~~IPt~-kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~--~~~~pvLIf~~t~~~ 440 (790)
T PRK09200 365 KLSGMTGTAKTEEKEFFEVYN-MEVVQIPTN-RPIIRIDYPDKVFVTLDEKYKAVIEEVKERH--ETGRPVLIGTGSIEQ 440 (790)
T ss_pred HHhccCCCChHHHHHHHHHhC-CcEEECCCC-CCcccccCCCeEEcCHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHH
Confidence 578899998 3345555554 345565543 2221111111 11222222233332222 347899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEecccccccccc---CCeE-----EEEeC
Q 011751 267 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTI---PGIK-----YVIDP 338 (478)
Q Consensus 267 ~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdi---p~v~-----~VI~~ 338 (478)
++.++..|.+. ++.+..+||.+.+.++..+...+..| +|+||||+++||+|| |+|. +||+
T Consensus 441 se~l~~~L~~~---------gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~- 508 (790)
T PRK09200 441 SETFSKLLDEA---------GIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIG- 508 (790)
T ss_pred HHHHHHHHHHC---------CCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEe-
Confidence 99999999886 88999999999999988888888766 799999999999999 7999 9999
Q ss_pred CcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEEecCHh
Q 011751 339 GFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPEN 387 (478)
Q Consensus 339 g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~ 387 (478)
|| .|.+...|.||+|||||.| +|.++.+++.+
T Consensus 509 -------~d----------~p~s~r~y~qr~GRtGR~G~~G~s~~~is~e 541 (790)
T PRK09200 509 -------TE----------RMESRRVDLQLRGRSGRQGDPGSSQFFISLE 541 (790)
T ss_pred -------cc----------CCCCHHHHHHhhccccCCCCCeeEEEEEcch
Confidence 76 6899999999999999999 99999988744
No 92
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=7.2e-25 Score=222.23 Aligned_cols=286 Identities=20% Similarity=0.177 Sum_probs=180.2
Q ss_pred EEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCChhhhHHHHh-
Q 011751 33 IIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIKEAL- 111 (478)
Q Consensus 33 ~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~l- 111 (478)
++.||||||||.++..++.... ..++.++++.|+.+++.|+.+++.+.++.. +.. ..+..+...+...|.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l--~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~----v~v---lhs~~~~~er~~~~~~ 71 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVL--ALGKSVLVLVPEIALTPQMIQRFKYRFGSQ----VAV---LHSGLSDSEKLQAWRK 71 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHH--HcCCeEEEEeCcHHHHHHHHHHHHHHhCCc----EEE---EECCCCHHHHHHHHHH
Confidence 4789999999966654443332 235679999999999999999998877643 221 122233333322111
Q ss_pred --h-------------CcCcCCCcceEeecccccchhhhHHHHH-HHHHHHhhcccccCCCCCCCCCCCchhhhccCCCC
Q 011751 112 --L-------------DPYLSRYSAIIVDEAHERTVHTDVLLGL-LKKVQNARSKSADGHSNGNNNNENSDMILDRGNDT 175 (478)
Q Consensus 112 --~-------------~~~l~~~~~lIiDE~H~r~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 175 (478)
. -..+.++++|||||.|+.+...+....+ .+.+...+.+
T Consensus 72 ~~~g~~~IVVGTrsalf~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~------------------------- 126 (505)
T TIGR00595 72 VKNGEILVVIGTRSALFLPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK------------------------- 126 (505)
T ss_pred HHcCCCCEEECChHHHcCcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH-------------------------
Confidence 0 0237889999999999654433221111 1111111100
Q ss_pred CCccccccccCCCCCCceEEEEcCCCChhHHHhhhCCC-CeEEeCCcc----cc-ceEEecCCCC--cchHHHHHHHHHH
Q 011751 176 NGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCA-KAVHVQGRQ----FP-VEILYTLYPE--PDYLDATLITIFQ 247 (478)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~-~~~~~~~~~----~~-~~~~~~~~~~--~~~~~~~~~~~~~ 247 (478)
..+.++|++|||+..+.+.....+. ..+..+.+. .| +++....... .......+..+.+
T Consensus 127 -------------~~~~~vil~SATPsles~~~~~~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~ 193 (505)
T TIGR00595 127 -------------KFNCPVVLGSATPSLESYHNAKQKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQ 193 (505)
T ss_pred -------------hcCCCEEEEeCCCCHHHHHHHhcCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHH
Confidence 1567899999999888776554322 222232211 11 1221111111 1112223333333
Q ss_pred hhhcCCCCCEEEEcCCHHH------------------------------------------------------------H
Q 011751 248 VHLDEAPGDILVFLTGQEE------------------------------------------------------------I 267 (478)
Q Consensus 248 ~~~~~~~~~~LVF~~s~~~------------------------------------------------------------~ 267 (478)
.. ..++++|||+|++.- +
T Consensus 194 ~l--~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gt 271 (505)
T TIGR00595 194 TL--AAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGT 271 (505)
T ss_pred HH--HcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccH
Confidence 33 236789999887642 5
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHH--HhhcCcCCCCccEEEEeccccccccccCCeEEEE--eCCcccc
Q 011751 268 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQ--MRVFAPAAAGFRKVILATNIAETSVTIPGIKYVI--DPGFVKA 343 (478)
Q Consensus 268 ~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r--~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI--~~g~~~~ 343 (478)
+++++.|.+.+. +..+..+|++++...+ +.+++.|++|+.+|||+|+++++|+|+|+|+.|+ |
T Consensus 272 e~~~e~l~~~fp-------~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~------ 338 (505)
T TIGR00595 272 EQVEEELAKLFP-------GARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLD------ 338 (505)
T ss_pred HHHHHHHHhhCC-------CCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEc------
Confidence 667777776543 6788999999987765 8899999999999999999999999999999884 5
Q ss_pred eeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEE
Q 011751 344 RLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFR 382 (478)
Q Consensus 344 ~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~ 382 (478)
+|...+.++++........+.|++|||||.+ .|.++.
T Consensus 339 --aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~vii 376 (505)
T TIGR00595 339 --ADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVII 376 (505)
T ss_pred --CcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEE
Confidence 5544444444334455678999999999987 898874
No 93
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.93 E-value=1.3e-24 Score=238.04 Aligned_cols=283 Identities=19% Similarity=0.227 Sum_probs=172.8
Q ss_pred HHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCC
Q 011751 6 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGV 85 (478)
Q Consensus 6 ~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~ 85 (478)
.......+.++++|+..++.+..|++++++||||||||+.+..++... ..++.+++++.|+++|+.|+.+.+......
T Consensus 70 ~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~l~~~~~l--~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~ 147 (1171)
T TIGR01054 70 FFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFGLAMSLFL--AKKGKRCYIILPTTLLVIQVAEKISSLAEK 147 (1171)
T ss_pred HHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEeCHHHHHHHHHHHHHHHHHh
Confidence 344456678999999999999999999999999999996433222221 123668999999999999999987665432
Q ss_pred cCCC---EEEEEEee------------------cccCChhhhHHHHhhCcCcCCCcceEeecccccch---hhhHHHHHH
Q 011751 86 ELGQ---RVGYSIRF------------------DDRTSTSTRIKEALLDPYLSRYSAIIVDEAHERTV---HTDVLLGLL 141 (478)
Q Consensus 86 ~~~~---~vg~~~~~------------------~~~~~~~~~~~~~l~~~~l~~~~~lIiDE~H~r~~---~~~~~l~~l 141 (478)
.+. .+++..+. +..+.+..++...+... ..+++++|+||||.... ..|.++.+
T Consensus 148 -~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l-~~~~~~iVvDEaD~~L~~~k~vd~il~l- 224 (1171)
T TIGR01054 148 -AGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL-GPKFDFIFVDDVDALLKASKNVDKLLKL- 224 (1171)
T ss_pred -cCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh-cCCCCEEEEeChHhhhhccccHHHHHHH-
Confidence 111 12211110 01112222332222221 12799999999994211 11111111
Q ss_pred HHHHHhhcccccCCCCCCCCCCCchhhhccCCCCC-Ccc----------------------ccccccCCCCCCceEEEEc
Q 011751 142 KKVQNARSKSADGHSNGNNNNENSDMILDRGNDTN-GIN----------------------TLKQCQGRKFAPLKLIIMS 198 (478)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~----------------------~~~~~~~~~~~~~~~i~lS 198 (478)
.+|... +.. .+..++. ....+++++|
T Consensus 225 -----------------------------lGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~q~~li~~S 273 (1171)
T TIGR01054 225 -----------------------------LGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPG--KKRGCLIVSS 273 (1171)
T ss_pred -----------------------------cCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhh--ccCcEEEEEe
Confidence 112111 111 1112211 0122467789
Q ss_pred CCCChhHHH-hhhCCCCeEEeCCcc---ccceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCH---HHHHHHH
Q 011751 199 ASLDARGFS-EYFGCAKAVHVQGRQ---FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQ---EEIESVE 271 (478)
Q Consensus 199 AT~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~---~~~~~l~ 271 (478)
||..+.... .++...-.+.+.... ..+...|..... .... +..+.... +.++||||+++ +.+++++
T Consensus 274 AT~~p~~~~~~l~r~ll~~~v~~~~~~~r~I~~~~~~~~~--~~~~----L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~ 346 (1171)
T TIGR01054 274 ATGRPRGKRAKLFRELLGFEVGGGSDTLRNVVDVYVEDED--LKET----LLEIVKKL-GTGGIVYVSIDYGKEKAEEIA 346 (1171)
T ss_pred CCCCccccHHHHcccccceEecCccccccceEEEEEeccc--HHHH----HHHHHHHc-CCCEEEEEeccccHHHHHHHH
Confidence 996322222 333332223333222 233334432221 1222 22222222 46799999999 9999999
Q ss_pred HHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEe----ccccccccccCC-eEEEEeCCcccce
Q 011751 272 RLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILA----TNIAETSVTIPG-IKYVIDPGFVKAR 344 (478)
Q Consensus 272 ~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlva----T~~~~~Gvdip~-v~~VI~~g~~~~~ 344 (478)
..|.+. ++.+..+||++++ .+++.|++|+.+|||| ||+++||+|+|+ |++||++|.++.+
T Consensus 347 ~~L~~~---------g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~~ 411 (1171)
T TIGR01054 347 EFLENH---------GVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKFK 411 (1171)
T ss_pred HHHHhC---------CceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCEE
Confidence 999876 8899999999973 6789999999999999 599999999999 8999999988765
No 94
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.92 E-value=8.3e-24 Score=192.28 Aligned_cols=294 Identities=17% Similarity=0.237 Sum_probs=194.3
Q ss_pred cHHHHHH----HHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhC-CcCCC
Q 011751 15 IASVEKR----LVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG-VELGQ 89 (478)
Q Consensus 15 ~~~~q~~----~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~-~~~~~ 89 (478)
+++.|+. ++..+.+.+..+|.|-||||||..+-+.+.... +.|.++.+..|+...+.+.+.|+...+. +.+..
T Consensus 98 Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al--~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~ 175 (441)
T COG4098 98 LSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQAL--NQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDL 175 (441)
T ss_pred cChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHH--hcCCeEEEecCcccchHHHHHHHHHhhccCCeee
Confidence 4556654 566677889999999999999966555554332 2367899999999999999999987766 43322
Q ss_pred EEEEEEee-c--ccC-ChhhhHHHHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccCCCCCCCCCCCc
Q 011751 90 RVGYSIRF-D--DRT-STSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENS 165 (478)
Q Consensus 90 ~vg~~~~~-~--~~~-~~~~~~~~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~ 165 (478)
.-|-.... . -.+ ++...+ .+-..++++||||++......|-.+.+.-+-..+
T Consensus 176 Lyg~S~~~fr~plvVaTtHQLl------rFk~aFD~liIDEVDAFP~~~d~~L~~Av~~ark------------------ 231 (441)
T COG4098 176 LYGDSDSYFRAPLVVATTHQLL------RFKQAFDLLIIDEVDAFPFSDDQSLQYAVKKARK------------------ 231 (441)
T ss_pred EecCCchhccccEEEEehHHHH------HHHhhccEEEEeccccccccCCHHHHHHHHHhhc------------------
Confidence 22211000 0 000 111111 1334589999999999888888887765433322
Q ss_pred hhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChhHHHhhhC-CCCeEEeCCccc----cceEE-ecCCCC----c
Q 011751 166 DMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFG-CAKAVHVQGRQF----PVEIL-YTLYPE----P 235 (478)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~-~~~~~~----~ 235 (478)
...-.|.||||...+.-.+... +...+.++.+.+ |+.-+ +..... .
T Consensus 232 ------------------------~~g~~IylTATp~k~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r 287 (441)
T COG4098 232 ------------------------KEGATIYLTATPTKKLERKILKGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQR 287 (441)
T ss_pred ------------------------ccCceEEEecCChHHHHHHhhhCCeeEeecchhhcCCCCCCCceEEeccHHHHhhh
Confidence 3456899999996554444433 233455554443 22211 111111 1
Q ss_pred chHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccE
Q 011751 236 DYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRK 315 (478)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~ 315 (478)
..+...+..++.-+. ..+.++|||+|+.+..++++..|.+.+. ...+...|+. ...|.+..+.|++|+.+
T Consensus 288 ~kl~~kl~~~lekq~-~~~~P~liF~p~I~~~eq~a~~lk~~~~-------~~~i~~Vhs~--d~~R~EkV~~fR~G~~~ 357 (441)
T COG4098 288 NKLPLKLKRWLEKQR-KTGRPVLIFFPEIETMEQVAAALKKKLP-------KETIASVHSE--DQHRKEKVEAFRDGKIT 357 (441)
T ss_pred ccCCHHHHHHHHHHH-hcCCcEEEEecchHHHHHHHHHHHhhCC-------ccceeeeecc--CccHHHHHHHHHcCceE
Confidence 112223333333333 2378899999999999999999977643 4556777876 34688889999999999
Q ss_pred EEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC---CCeEEEec
Q 011751 316 VILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLY 384 (478)
Q Consensus 316 vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~ 384 (478)
+||+|+++|+||++|+|+++| .+... .-.|.+..+|.+||+||.- .|.++.+-
T Consensus 358 lLiTTTILERGVTfp~vdV~V---------lgaeh-------~vfTesaLVQIaGRvGRs~~~PtGdv~FFH 413 (441)
T COG4098 358 LLITTTILERGVTFPNVDVFV---------LGAEH-------RVFTESALVQIAGRVGRSLERPTGDVLFFH 413 (441)
T ss_pred EEEEeehhhcccccccceEEE---------ecCCc-------ccccHHHHHHHhhhccCCCcCCCCcEEEEe
Confidence 999999999999999999988 33211 2367889999999999976 67765554
No 95
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.92 E-value=1.8e-23 Score=209.52 Aligned_cols=287 Identities=17% Similarity=0.194 Sum_probs=185.6
Q ss_pred hhhcCCcHHHHHHHHHHHhc----CCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhC
Q 011751 9 QRKSLPIASVEKRLVEEVRK----NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (478)
Q Consensus 9 ~~~~~~~~~~q~~~~~~l~~----~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (478)
....+.++++|++++.++.. ++..+++.|||+|||.++..++.... ..+++++|++.++.|..+++.....
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~-----~~~Lvlv~~~~L~~Qw~~~~~~~~~ 105 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK-----RSTLVLVPTKELLDQWAEALKKFLL 105 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc-----CCEEEEECcHHHHHHHHHHHHHhcC
Confidence 34456689999999999998 89999999999999988877776653 2399999999999999887777666
Q ss_pred Cc--CCCEEEEEEeecc-cC---ChhhhHHH-HhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccCCCC
Q 011751 85 VE--LGQRVGYSIRFDD-RT---STSTRIKE-ALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSN 157 (478)
Q Consensus 85 ~~--~~~~vg~~~~~~~-~~---~~~~~~~~-~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~~~~ 157 (478)
.. .|..-|....... .. +..+.... .+......++++||+||||........ .++...
T Consensus 106 ~~~~~g~~~~~~~~~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~--~~~~~~------------- 170 (442)
T COG1061 106 LNDEIGIYGGGEKELEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYR--RILELL------------- 170 (442)
T ss_pred CccccceecCceeccCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHH--HHHHhh-------------
Confidence 53 2222221111111 01 11111111 222223336999999999954332211 111111
Q ss_pred CCCCCCCchhhhccCCCCCCccccccccCCCCCCce-EEEEcCCC---Chh---HHHhhhCCCCeEEeC-------Cccc
Q 011751 158 GNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLK-LIIMSASL---DAR---GFSEYFGCAKAVHVQ-------GRQF 223 (478)
Q Consensus 158 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~lSAT~---~~~---~~~~~~~~~~~~~~~-------~~~~ 223 (478)
.... +++||||+ +.. .+..++| ..+.... +...
T Consensus 171 --------------------------------~~~~~~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~La 217 (442)
T COG1061 171 --------------------------------SAAYPRLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLA 217 (442)
T ss_pred --------------------------------hcccceeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCcc
Confidence 2233 89999997 322 2333333 2222221 2222
Q ss_pred cceEEecCCCCc-----c------hH-----------------------HHHHHHHHHhhhcC-CCCCEEEEcCCHHHHH
Q 011751 224 PVEILYTLYPEP-----D------YL-----------------------DATLITIFQVHLDE-APGDILVFLTGQEEIE 268 (478)
Q Consensus 224 ~~~~~~~~~~~~-----~------~~-----------------------~~~~~~~~~~~~~~-~~~~~LVF~~s~~~~~ 268 (478)
|........... . .. ......+..+.... .+.+++||+.+..+++
T Consensus 218 p~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~ 297 (442)
T COG1061 218 PYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAY 297 (442)
T ss_pred ceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHH
Confidence 322222111100 0 00 00111111111111 3678999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecC
Q 011751 269 SVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDP 348 (478)
Q Consensus 269 ~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~ 348 (478)
.++..+... +. +..+.+..+..+|..+++.|+.|.+++||++.++..|+|+|+++++|.
T Consensus 298 ~i~~~~~~~---------~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~----------- 356 (442)
T COG1061 298 EIAKLFLAP---------GI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLII----------- 356 (442)
T ss_pred HHHHHhcCC---------Cc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEE-----------
Confidence 999988653 44 778899999999999999999999999999999999999999999995
Q ss_pred CCCcccceeeecCHHHHHHhhcccCCCC
Q 011751 349 VKGMESLLVVPISKAQALQRSGRAGREG 376 (478)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~Qr~GRaGR~~ 376 (478)
.....|...|.||+||.-|..
T Consensus 357 -------~~~t~S~~~~~Q~lGR~LR~~ 377 (442)
T COG1061 357 -------LRPTGSRRLFIQRLGRGLRPA 377 (442)
T ss_pred -------eCCCCcHHHHHHHhhhhccCC
Confidence 224678999999999999944
No 96
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.92 E-value=1.8e-23 Score=219.53 Aligned_cols=305 Identities=21% Similarity=0.266 Sum_probs=222.1
Q ss_pred chhHHHhhhcCCcHHHHHHHHHHHhcC------CEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHH
Q 011751 3 RQKILQQRKSLPIASVEKRLVEEVRKN------DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVA 76 (478)
Q Consensus 3 ~~~~~~~~~~~~~~~~q~~~~~~l~~~------~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~ 76 (478)
+++-......|.-++=|..++..+.++ -+=+|||.-|-|||.++.-++..+... |+.|.+++||..|++|.+
T Consensus 583 ~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~--GKQVAvLVPTTlLA~QHy 660 (1139)
T COG1197 583 WQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD--GKQVAVLVPTTLLAQQHY 660 (1139)
T ss_pred HHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC--CCeEEEEcccHHhHHHHH
Confidence 455566666777788888888888644 366999999999999988888877654 688999999999999999
Q ss_pred HHHHHHhCCcCCCEEEEEEeecccCChhhhHH--------------HHhh-CcCcCCCcceEeecccccchhhhHHHHHH
Q 011751 77 KRVAEESGVELGQRVGYSIRFDDRTSTSTRIK--------------EALL-DPYLSRYSAIIVDEAHERTVHTDVLLGLL 141 (478)
Q Consensus 77 ~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~--------------~~l~-~~~l~~~~~lIiDE~H~r~~~~~~~l~~l 141 (478)
+.+.+.+. .+...|+...++.+.......+. .++. +..+.+++++||||=|...+.-.
T Consensus 661 ~tFkeRF~-~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlIIDEEqRFGVk~K------ 733 (1139)
T COG1197 661 ETFKERFA-GFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLIIDEEQRFGVKHK------ 733 (1139)
T ss_pred HHHHHHhc-CCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEEEechhhcCccHH------
Confidence 99977665 45667776555543322222222 3332 34588999999999984333222
Q ss_pred HHHHHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChhHHHhhh-CCC--CeEEe
Q 011751 142 KKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYF-GCA--KAVHV 218 (478)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~-~~~--~~~~~ 218 (478)
+.++.+. .++.++-||||+=+..+.--+ |-. .++..
T Consensus 734 -------------------------------------EkLK~Lr----~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~T 772 (1139)
T COG1197 734 -------------------------------------EKLKELR----ANVDVLTLSATPIPRTLNMSLSGIRDLSVIAT 772 (1139)
T ss_pred -------------------------------------HHHHHHh----ccCcEEEeeCCCCcchHHHHHhcchhhhhccC
Confidence 2222222 778899999999555544222 221 22322
Q ss_pred -CCccccceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCC
Q 011751 219 -QGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSL 297 (478)
Q Consensus 219 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l 297 (478)
+....|+..+..+....-..++ +.+.. ..+|++-.-.|..+++++++..|++.. +..++...||.|
T Consensus 773 PP~~R~pV~T~V~~~d~~~ireA----I~REl--~RgGQvfYv~NrV~~Ie~~~~~L~~LV-------PEarI~vaHGQM 839 (1139)
T COG1197 773 PPEDRLPVKTFVSEYDDLLIREA----ILREL--LRGGQVFYVHNRVESIEKKAERLRELV-------PEARIAVAHGQM 839 (1139)
T ss_pred CCCCCcceEEEEecCChHHHHHH----HHHHH--hcCCEEEEEecchhhHHHHHHHHHHhC-------CceEEEEeecCC
Confidence 3455777777665544332222 22222 238999999999999999999999874 377888899999
Q ss_pred CHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-
Q 011751 298 PSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG- 376 (478)
Q Consensus 298 ~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~- 376 (478)
+..+-+.++..|-+|..+|||||.+.|.|||||+++.+|- .+. --.-.++..|..||+||..
T Consensus 840 ~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiII--------e~A---------D~fGLsQLyQLRGRVGRS~~ 902 (1139)
T COG1197 840 RERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIII--------ERA---------DKFGLAQLYQLRGRVGRSNK 902 (1139)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEE--------ecc---------ccccHHHHHHhccccCCccc
Confidence 9999999999999999999999999999999999998873 221 1245688999999999998
Q ss_pred CCeEEEecCHh
Q 011751 377 PGKCFRLYPEN 387 (478)
Q Consensus 377 ~G~~~~l~~~~ 387 (478)
.|.||.+|++.
T Consensus 903 ~AYAYfl~p~~ 913 (1139)
T COG1197 903 QAYAYFLYPPQ 913 (1139)
T ss_pred eEEEEEeecCc
Confidence 99999999743
No 97
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.92 E-value=5.3e-23 Score=210.68 Aligned_cols=162 Identities=24% Similarity=0.234 Sum_probs=121.9
Q ss_pred eEEEEcCCC--ChhHHHhhhCCCCeEEeCCccccceEEecCC----CCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHH
Q 011751 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILYTLY----PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE 266 (478)
Q Consensus 193 ~~i~lSAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~ 266 (478)
++.+||.|. ..++|.+.++ .+++.+|... |......+. ...+...+.+..+...+ ..+.++||||+|.+.
T Consensus 342 kl~GmTGTa~te~~E~~~iY~-l~vv~IPtnk-p~~R~d~~d~i~~t~~~k~~ai~~~i~~~~--~~grpvLV~t~si~~ 417 (745)
T TIGR00963 342 KLSGMTGTAKTEEEEFEKIYN-LEVVVVPTNR-PVIRKDLSDLVYKTEEEKWKAVVDEIKERH--AKGQPVLVGTTSVEK 417 (745)
T ss_pred hhhccCCCcHHHHHHHHHHhC-CCEEEeCCCC-CeeeeeCCCeEEcCHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHH
Confidence 578899999 4456666665 3455555422 221111111 11222333444444444 448899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCC-------eEEEEeCC
Q 011751 267 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPG-------IKYVIDPG 339 (478)
Q Consensus 267 ~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~-------v~~VI~~g 339 (478)
++.+++.|.+. ++....+|+. +.+|+..+..|+.+...|+||||+++||+||+. .-+||+
T Consensus 418 se~ls~~L~~~---------gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~-- 484 (745)
T TIGR00963 418 SELLSNLLKER---------GIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIG-- 484 (745)
T ss_pred HHHHHHHHHHc---------CCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEe--
Confidence 99999999987 8888899998 778999999999999999999999999999998 459998
Q ss_pred cccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEEecCHh
Q 011751 340 FVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPEN 387 (478)
Q Consensus 340 ~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~ 387 (478)
|+ .|.|...+.||+|||||.| +|.+..+++.+
T Consensus 485 ------t~----------~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~e 517 (745)
T TIGR00963 485 ------TE----------RHESRRIDNQLRGRSGRQGDPGSSRFFLSLE 517 (745)
T ss_pred ------cC----------CCCcHHHHHHHhccccCCCCCcceEEEEecc
Confidence 55 5899999999999999999 99988888644
No 98
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.91 E-value=1.5e-23 Score=192.51 Aligned_cols=300 Identities=18% Similarity=0.198 Sum_probs=199.3
Q ss_pred cHHHHHHHHHHHhcCCEEEEEcCCCCcHH--hHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEE
Q 011751 15 IASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVG 92 (478)
Q Consensus 15 ~~~~q~~~~~~l~~~~~~~i~apTGsGKT--~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg 92 (478)
.+|.|.+++.....|++++++.|||.||| +++|.++.+ ...+++.|...++..+.-.+. ..|......-.
T Consensus 95 frplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~ad-------g~alvi~plislmedqil~lk-qlgi~as~lna 166 (695)
T KOG0353|consen 95 FRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCAD-------GFALVICPLISLMEDQILQLK-QLGIDASMLNA 166 (695)
T ss_pred cChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhcC-------CceEeechhHHHHHHHHHHHH-HhCcchhhccC
Confidence 46899999999999999999999999999 555554433 257788899888866554442 22322100000
Q ss_pred ----------------EEEeecccCChhhhHH---HHh---hC-cCcCCCcceEeecccccchhhhHHHHHHHHHHHhhc
Q 011751 93 ----------------YSIRFDDRTSTSTRIK---EAL---LD-PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARS 149 (478)
Q Consensus 93 ----------------~~~~~~~~~~~~~~~~---~~l---~~-~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~ 149 (478)
-...+.-...+++.+. .++ .. -....+..+-+||+|+-+.|.+.+..-.+.+--
T Consensus 167 nsske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~i--- 243 (695)
T KOG0353|consen 167 NSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGI--- 243 (695)
T ss_pred cccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHH---
Confidence 0000000000111111 111 11 124457889999999977766554332222211
Q ss_pred ccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCCh---hHHHhhhCCCCeEEeCCccccce
Q 011751 150 KSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA---RGFSEYFGCAKAVHVQGRQFPVE 226 (478)
Q Consensus 150 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~---~~~~~~~~~~~~~~~~~~~~~~~ 226 (478)
+.+. .++..+++++||... .+..+.++-...+.+.......+
T Consensus 244 -------------------lkrq----------------f~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~n 288 (695)
T KOG0353|consen 244 -------------------LKRQ----------------FKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPN 288 (695)
T ss_pred -------------------HHHh----------------CCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCC
Confidence 1111 177889999999932 23334444333334333333344
Q ss_pred EEecCCCCcchHHHHHHHHHHhhhc-CCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhh
Q 011751 227 ILYTLYPEPDYLDATLITIFQVHLD-EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRV 305 (478)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i 305 (478)
+.|.....+...+..+..+...... -.+...||||-+++++++++..|... ++....+|+.|.+++|.-+
T Consensus 289 l~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~---------gi~a~~yha~lep~dks~~ 359 (695)
T KOG0353|consen 289 LKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNH---------GIHAGAYHANLEPEDKSGA 359 (695)
T ss_pred ceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhc---------CccccccccccCccccccc
Confidence 4554444444444444444443332 33556899999999999999999987 8999999999999999999
Q ss_pred cCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHH------------------
Q 011751 306 FAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQ------------------ 367 (478)
Q Consensus 306 ~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Q------------------ 367 (478)
-+.+-.|++.|+|||-.+.+|+|-|+|++||+ ...|.|.++|.|
T Consensus 360 hq~w~a~eiqvivatvafgmgidkpdvrfvih------------------hsl~ksienyyqasarillrmtkqknksdt 421 (695)
T KOG0353|consen 360 HQGWIAGEIQVIVATVAFGMGIDKPDVRFVIH------------------HSLPKSIENYYQASARILLRMTKQKNKSDT 421 (695)
T ss_pred cccccccceEEEEEEeeecccCCCCCeeEEEe------------------cccchhHHHHHHHHHHHHHHHhhhcccccC
Confidence 99999999999999999999999999999998 225889999999
Q ss_pred -------------------------hhcccCCCC-CCeEEEecCHh
Q 011751 368 -------------------------RSGRAGREG-PGKCFRLYPEN 387 (478)
Q Consensus 368 -------------------------r~GRaGR~~-~G~~~~l~~~~ 387 (478)
..|||||.+ +..|+..|.-.
T Consensus 422 ggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~ 467 (695)
T KOG0353|consen 422 GGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFA 467 (695)
T ss_pred CCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechH
Confidence 889999999 88898888533
No 99
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.91 E-value=3e-23 Score=210.25 Aligned_cols=330 Identities=19% Similarity=0.236 Sum_probs=211.5
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhC-CcC--CC
Q 011751 13 LPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG-VEL--GQ 89 (478)
Q Consensus 13 ~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~-~~~--~~ 89 (478)
|.+..+|.+.++.+..++..+|+|||.+|||++-+.++-......+...++++.|+++++.|+...+...+. ..+ +.
T Consensus 510 F~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~ 589 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGV 589 (1330)
T ss_pred cCCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccch
Confidence 778889999999999999999999999999977766665555555677899999999999999988766552 211 11
Q ss_pred E-EE-----EEEe---ecccCChhhhHHHHhhC-----cCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccCC
Q 011751 90 R-VG-----YSIR---FDDRTSTSTRIKEALLD-----PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGH 155 (478)
Q Consensus 90 ~-vg-----~~~~---~~~~~~~~~~~~~~l~~-----~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~~ 155 (478)
+ +| |... .....+....+..++.. .+..+++++|+||+|..
T Consensus 590 sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~i------------------------- 644 (1330)
T KOG0949|consen 590 SLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLI------------------------- 644 (1330)
T ss_pred hhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhc-------------------------
Confidence 1 11 1110 00112233344444433 46889999999999942
Q ss_pred CCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC-ChhHHHhhhCCC--------CeEEeCCccccce
Q 011751 156 SNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCA--------KAVHVQGRQFPVE 226 (478)
Q Consensus 156 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~-~~~~~~~~~~~~--------~~~~~~~~~~~~~ 226 (478)
|....|-..+.++.. .++.++++|||+ |++.+..|+... ..+....+...+.
T Consensus 645 -G~~ed~l~~Eqll~l------------------i~CP~L~LSATigN~~l~qkWlnq~~R~~sr~~eli~~~erySel~ 705 (1330)
T KOG0949|consen 645 -GNEEDGLLWEQLLLL------------------IPCPFLVLSATIGNPNLFQKWLNQRGRAMSRNAELIDYGERYSELG 705 (1330)
T ss_pred -cccccchHHHHHHHh------------------cCCCeeEEecccCCHHHHHHHHHHHHhhcCCCeeeeehhhhhhhhc
Confidence 222222222222222 557899999999 999999998521 1111111000000
Q ss_pred EE-----------------------------ecCC-----------------------------CCc-------------
Q 011751 227 IL-----------------------------YTLY-----------------------------PEP------------- 235 (478)
Q Consensus 227 ~~-----------------------------~~~~-----------------------------~~~------------- 235 (478)
.. +... ++.
T Consensus 706 l~v~n~~~e~n~~yl~~~falgerai~~~~~~~~~s~dd~~~lafe~~~~l~~~k~~kl~~k~~p~~~fe~~~~~~k~~~ 785 (1330)
T KOG0949|consen 706 LVVYNRMNEGNAYYLLKLFALGERAIIVSLRELSESEDDNVVLAFEPLSCLTLRKLNKLLIKITPENFFESNIVTKKEVG 785 (1330)
T ss_pred ceeeccCCCCcchHHHHHHhhchhhccchhhccccCCCCceEeeccchhHHHHHHHHHHHhhcCHHHhhhhhhheechHH
Confidence 00 0000 000
Q ss_pred ---------------c-------------------------------hHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHH
Q 011751 236 ---------------D-------------------------------YLDATLITIFQVHLDEAPGDILVFLTGQEEIES 269 (478)
Q Consensus 236 ---------------~-------------------------------~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~ 269 (478)
+ +....+-.++........-+.++|-..+..|+.
T Consensus 786 e~~r~~~~l~~~f~e~s~~q~kik~~~ki~~k~Vnkqle~~~~ys~e~i~~nil~ll~dLkEK~~lpaicfn~dr~fcek 865 (1330)
T KOG0949|consen 786 EYGRHLLELFQGFIEDSLTQKQIKYVYKLQTKEVNKQLESVVDYSSEYILENILDLLMDLKEKNMLPAICFNTDRDFCEK 865 (1330)
T ss_pred HHHHHHHHHHHHhhhcChHHHHHHHHHHhhhhhhhhHhhhcccCcHHHHHHHHHHHHHHHHhccccchhcccchHHHHHH
Confidence 0 000001111112223345689999999988888
Q ss_pred HHHHHHHHHh----------------------------------------------------------------------
Q 011751 270 VERLVQERLL---------------------------------------------------------------------- 279 (478)
Q Consensus 270 l~~~l~~~~~---------------------------------------------------------------------- 279 (478)
++..+.+.+.
T Consensus 866 la~kv~~~Le~~e~Ee~k~k~m~k~kk~~~~a~~r~Kt~e~~~k~~~~~ek~~~~k~d~~~~~~~f~dp~~~~~~~~f~~ 945 (1330)
T KOG0949|consen 866 LALKVHRQLESMEMEEKKDKLMEKMKKEAKRARDREKTKESWIKESIAAEKSFQMKNDKKNIKYTFLDPLTKLTDYEFEE 945 (1330)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccceEEecCcccccchhhhhh
Confidence 8766655433
Q ss_pred --cCCCCCCC-------eEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCC
Q 011751 280 --QLPEASRK-------LVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVK 350 (478)
Q Consensus 280 --~~~~~~~~-------~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~ 350 (478)
+.-.+.+. -.+..+|+||...+|..++-.||.|.+.|++||.+++.|||+|..++|+- -|
T Consensus 946 ~~~~~g~~~~~~id~lyRGiG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~--------gD--- 1014 (1330)
T KOG0949|consen 946 ETKFIGNTDFEFIDMLYRGIGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFA--------GD--- 1014 (1330)
T ss_pred hccccCCCcHHHHHHHHhcccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEe--------cc---
Confidence 00000000 13556799999999999999999999999999999999999999999984 22
Q ss_pred CcccceeeecCHHHHHHhhcccCCCC---CCeEEEe-cCHhhHhcccCCCCCccccc
Q 011751 351 GMESLLVVPISKAQALQRSGRAGREG---PGKCFRL-YPENEFDKLEDSTKPEIKRC 403 (478)
Q Consensus 351 ~~~~~~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l-~~~~~~~~~~~~~~pei~~~ 403 (478)
....++-.|.||+|||||.| -|.+..+ ++......+.-...|.|...
T Consensus 1015 ------sLQL~plny~QmaGRAGRRGFD~lGnV~FmgiP~~kv~rLlts~L~diqG~ 1065 (1330)
T KOG0949|consen 1015 ------SLQLDPLNYKQMAGRAGRRGFDTLGNVVFMGIPRQKVQRLLTSLLPDIQGA 1065 (1330)
T ss_pred ------ccccCchhHHhhhccccccccccccceEEEeCcHHHHHHHHHHhhhcccCC
Confidence 13467788999999999999 5775544 46666666666667777655
No 100
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.89 E-value=1.5e-21 Score=212.62 Aligned_cols=112 Identities=21% Similarity=0.293 Sum_probs=88.3
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCcc-EEEEeccccccccccCC
Q 011751 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFR-KVILATNIAETSVTIPG 331 (478)
Q Consensus 253 ~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~-~vlvaT~~~~~Gvdip~ 331 (478)
.++++||||.++++++.+++.|.+.+........+..+..+||+.+ ++..+++.|+++.. +|+|+++++.+|+|+|+
T Consensus 697 ~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~ 774 (1123)
T PRK11448 697 GEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPS 774 (1123)
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCccc
Confidence 3589999999999999999999886543222222335566888875 46779999999876 79999999999999999
Q ss_pred eEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCCC--Ce-EEEec
Q 011751 332 IKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGP--GK-CFRLY 384 (478)
Q Consensus 332 v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~--G~-~~~l~ 384 (478)
+.+||. ++ .+.|...|+||+||+.|..+ |+ .+.++
T Consensus 775 v~~vVf--------~r----------pvkS~~lf~QmIGRgtR~~~~~~K~~f~I~ 812 (1123)
T PRK11448 775 ICNLVF--------LR----------RVRSRILYEQMLGRATRLCPEIGKTHFRIF 812 (1123)
T ss_pred ccEEEE--------ec----------CCCCHHHHHHHHhhhccCCccCCCceEEEE
Confidence 999995 44 46889999999999999875 55 34444
No 101
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.88 E-value=5.2e-20 Score=196.37 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=98.0
Q ss_pred HHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCC--ccEEEEeccc
Q 011751 245 IFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG--FRKVILATNI 322 (478)
Q Consensus 245 ~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g--~~~vlvaT~~ 322 (478)
+........+.++||||+++..+..+++.|+... ++.+..+||+|+..+|.++++.|+++ ..+|+|||++
T Consensus 484 L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~--------Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdv 555 (956)
T PRK04914 484 LIDFLKSHRSEKVLVICAKAATALQLEQALRERE--------GIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEI 555 (956)
T ss_pred HHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhcc--------CeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechh
Confidence 3444444457799999999999999999995431 78899999999999999999999874 6899999999
Q ss_pred cccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCe--EEEecC
Q 011751 323 AETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGK--CFRLYP 385 (478)
Q Consensus 323 ~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~--~~~l~~ 385 (478)
+++|+|++.+++||+ || .|.++..|.||+||+||.| .|. +|.++.
T Consensus 556 gseGlNlq~a~~VIn--------fD----------lP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~ 603 (956)
T PRK04914 556 GSEGRNFQFASHLVL--------FD----------LPFNPDLLEQRIGRLDRIGQKHDIQIHVPYL 603 (956)
T ss_pred hccCCCcccccEEEE--------ec----------CCCCHHHHHHHhcccccCCCCceEEEEEccC
Confidence 999999999999999 88 6899999999999999999 454 444443
No 102
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=4.2e-20 Score=191.17 Aligned_cols=162 Identities=23% Similarity=0.280 Sum_probs=120.5
Q ss_pred eEEEEcCCC--ChhHHHhhhCCCCeEEeCCccccceEEecCCC----CcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHH
Q 011751 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILYTLYP----EPDYLDATLITIFQVHLDEAPGDILVFLTGQEE 266 (478)
Q Consensus 193 ~~i~lSAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~ 266 (478)
++-+||.|. ..++|.+.++ .+++.+|... |......+.. ........+..+...+ ..+.++||||+|.+.
T Consensus 377 kl~GmTGTa~~e~~Ef~~iY~-l~vv~IPtnk-p~~r~d~~d~i~~t~~~K~~al~~~i~~~~--~~g~pvLI~t~si~~ 452 (796)
T PRK12906 377 KLSGMTGTAKTEEEEFREIYN-MEVITIPTNR-PVIRKDSPDLLYPTLDSKFNAVVKEIKERH--AKGQPVLVGTVAIES 452 (796)
T ss_pred hhhccCCCCHHHHHHHHHHhC-CCEEEcCCCC-CeeeeeCCCeEEcCHHHHHHHHHHHHHHHH--hCCCCEEEEeCcHHH
Confidence 578899998 3445666554 3455555422 2221111111 1122223333333333 358899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEecccccccccc---CCeE-----EEEeC
Q 011751 267 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTI---PGIK-----YVIDP 338 (478)
Q Consensus 267 ~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdi---p~v~-----~VI~~ 338 (478)
++.++..|.+. ++....+|+.+...++..+..+++.|. |+||||+++||.|| ++|. +||+
T Consensus 453 se~ls~~L~~~---------gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~- 520 (796)
T PRK12906 453 SERLSHLLDEA---------GIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIG- 520 (796)
T ss_pred HHHHHHHHHHC---------CCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEe-
Confidence 99999999987 888899999999888888888888876 99999999999999 4899 9998
Q ss_pred CcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEEecCHh
Q 011751 339 GFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPEN 387 (478)
Q Consensus 339 g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~ 387 (478)
|+ .|.|...+.|+.|||||.| +|.+..+++.+
T Consensus 521 -------te----------~pes~ri~~Ql~GRtGRqG~~G~s~~~~sle 553 (796)
T PRK12906 521 -------TE----------RHESRRIDNQLRGRSGRQGDPGSSRFYLSLE 553 (796)
T ss_pred -------ee----------cCCcHHHHHHHhhhhccCCCCcceEEEEecc
Confidence 55 5899999999999999999 99988888644
No 103
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.85 E-value=1.4e-20 Score=199.69 Aligned_cols=299 Identities=19% Similarity=0.165 Sum_probs=180.7
Q ss_pred CcHHHHHHHHHHHhcC---C-EEEEEcCCCCcHHhHHHHHHhhcCcc--CCCcEEEEecchHHHHHHHHHHHHHHhCCcC
Q 011751 14 PIASVEKRLVEEVRKN---D-ILIIVGETGSGKTTQLPQFLFHAGFC--RDGKLIGVTQPRRVAAVTVAKRVAEESGVEL 87 (478)
Q Consensus 14 ~~~~~q~~~~~~l~~~---~-~~~i~apTGsGKT~~~~~~~~~~~~~--~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~ 87 (478)
+.++.|..+...+... . .+++.||||+|||++...+....... ....+++++.|.+.++.++.+++....+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 4567888887776543 4 78899999999996655554433222 2467899999999999999999876554321
Q ss_pred --CC-EEEEEEe----ec-----cc---------------CChhhhHHHHhhCcC------cCCCcceEeecccccchhh
Q 011751 88 --GQ-RVGYSIR----FD-----DR---------------TSTSTRIKEALLDPY------LSRYSAIIVDEAHERTVHT 134 (478)
Q Consensus 88 --~~-~vg~~~~----~~-----~~---------------~~~~~~~~~~l~~~~------l~~~~~lIiDE~H~r~~~~ 134 (478)
+. ..+.... .. .. ......+........ .-..+.+|+||+|....++
T Consensus 275 ~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~ 354 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADET 354 (733)
T ss_pred cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccc
Confidence 11 0110000 00 00 000000000000000 0125789999999777663
Q ss_pred --hHHHHHHHHHHHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChh---HHHhh
Q 011751 135 --DVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR---GFSEY 209 (478)
Q Consensus 135 --~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~---~~~~~ 209 (478)
..+++++..+.. .+.++|+||||++.. .+.+.
T Consensus 355 ~~~~l~~~i~~l~~-------------------------------------------~g~~ill~SATlP~~~~~~l~~~ 391 (733)
T COG1203 355 MLAALLALLEALAE-------------------------------------------AGVPVLLMSATLPPFLKEKLKKA 391 (733)
T ss_pred hHHHHHHHHHHHHh-------------------------------------------CCCCEEEEecCCCHHHHHHHHHH
Confidence 222222222211 567899999999543 34455
Q ss_pred hCCCCeEEeCCccccceEEec-CCCC-cchHHHH--HHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCC
Q 011751 210 FGCAKAVHVQGRQFPVEILYT-LYPE-PDYLDAT--LITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEAS 285 (478)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~--~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~ 285 (478)
++....+.......+....+. .... .+..+.. ............+++++|-|||...+.+++..|+..
T Consensus 392 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~-------- 463 (733)
T COG1203 392 LGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEK-------- 463 (733)
T ss_pred HhcccceeccccccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhc--------
Confidence 543322222211111000000 0000 0011110 001111122345789999999999999999999885
Q ss_pred CCeEEEEccCCCCHHHHHhhcCcC----CCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecC
Q 011751 286 RKLVTVPIFSSLPSEQQMRVFAPA----AAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPIS 361 (478)
Q Consensus 286 ~~~~v~~~h~~l~~~~r~~i~~~f----~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s 361 (478)
...+..+||.+...+|.+.++.+ +.+...|+|||++.|.|+|+ +.+++|- .+.+
T Consensus 464 -~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi-dfd~mIT--------------------e~aP 521 (733)
T COG1203 464 -GPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI-DFDVLIT--------------------ELAP 521 (733)
T ss_pred -CCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc-ccCeeee--------------------cCCC
Confidence 33689999999999998887643 45678999999999999999 5777773 4688
Q ss_pred HHHHHHhhcccCCCC---CCeEEEecC
Q 011751 362 KAQALQRSGRAGREG---PGKCFRLYP 385 (478)
Q Consensus 362 ~~~~~Qr~GRaGR~~---~G~~~~l~~ 385 (478)
..+.+||+||++|.| +|..+....
T Consensus 522 idSLIQR~GRv~R~g~~~~~~~~v~~~ 548 (733)
T COG1203 522 IDSLIQRAGRVNRHGKKENGKIYVYND 548 (733)
T ss_pred HHHHHHHHHHHhhcccccCCceeEeec
Confidence 899999999999999 566666553
No 104
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.82 E-value=2.1e-18 Score=179.38 Aligned_cols=113 Identities=18% Similarity=0.203 Sum_probs=101.1
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCC
Q 011751 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPG 331 (478)
Q Consensus 252 ~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~ 331 (478)
..+.++||||+|++.++.+++.|.+. ++.+..+||+++..+|.+++..|++|...|+|||+.+++|+|+|+
T Consensus 440 ~~g~~vLIf~~tk~~ae~L~~~L~~~---------gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~ 510 (655)
T TIGR00631 440 ARNERVLVTTLTKKMAEDLTDYLKEL---------GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPE 510 (655)
T ss_pred cCCCEEEEEECCHHHHHHHHHHHhhh---------ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCC
Confidence 34778999999999999999999987 788999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCCCCeEEEecCH
Q 011751 332 IKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPE 386 (478)
Q Consensus 332 v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~ 386 (478)
+++||. +|... ...|.+..+|+||+|||||..+|.++.+++.
T Consensus 511 v~lVvi--------~Dadi-----fG~p~~~~~~iqriGRagR~~~G~vi~~~~~ 552 (655)
T TIGR00631 511 VSLVAI--------LDADK-----EGFLRSERSLIQTIGRAARNVNGKVIMYADK 552 (655)
T ss_pred CcEEEE--------eCccc-----ccCCCCHHHHHHHhcCCCCCCCCEEEEEEcC
Confidence 999998 65322 1146788999999999999999999988864
No 105
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.82 E-value=2.8e-20 Score=162.57 Aligned_cols=273 Identities=16% Similarity=0.168 Sum_probs=175.2
Q ss_pred hhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCC-CcEEEEecchHHHHHHHHHHHHHHhCCcCC
Q 011751 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD-GKLIGVTQPRRVAAVTVAKRVAEESGVELG 88 (478)
Q Consensus 10 ~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~-~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~ 88 (478)
.++--+..+|.+.++...-|-+++.+|.+|-|||.++.+.-++.....+ ...++++..+|+++-|+.+....+...-..
T Consensus 60 cgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~ 139 (387)
T KOG0329|consen 60 CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPS 139 (387)
T ss_pred ccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCC
Confidence 3444678899999999999999999999999999776666555544333 446899999999999998877666665545
Q ss_pred CEEEEEEeeccc--------------CChhhhHHHHhhC--cCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccc
Q 011751 89 QRVGYSIRFDDR--------------TSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSA 152 (478)
Q Consensus 89 ~~vg~~~~~~~~--------------~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~ 152 (478)
..+..-.++-.. +.+..++..+..+ ..+.+++++|+|||+ .++.++-.+|
T Consensus 140 vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcd----------kmle~lDMrR---- 205 (387)
T KOG0329|consen 140 VKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECD----------KMLEQLDMRR---- 205 (387)
T ss_pred ceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHH----------HHHHHHHHHH----
Confidence 554433222211 2334444444443 357899999999996 2222222222
Q ss_pred cCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC--ChhHHHhhhCCCC-eEEeCC----ccccc
Q 011751 153 DGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSEYFGCAK-AVHVQG----RQFPV 225 (478)
Q Consensus 153 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~--~~~~~~~~~~~~~-~~~~~~----~~~~~ 225 (478)
+..++.+..+ ..-|+.++|||+ +...+.+-|-..| -+.++. ..+.+
T Consensus 206 -----------------------DvQEifr~tp----~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGL 258 (387)
T KOG0329|consen 206 -----------------------DVQEIFRMTP----HEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGL 258 (387)
T ss_pred -----------------------HHHHHhhcCc----ccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhH
Confidence 1122222222 567899999999 4444543332222 222221 11233
Q ss_pred eEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhh
Q 011751 226 EILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRV 305 (478)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i 305 (478)
..+|....+.+.-. .+.++.....-.+++||+.+.... .
T Consensus 259 qQ~YvkLke~eKNr----kl~dLLd~LeFNQVvIFvKsv~Rl-------------------~------------------ 297 (387)
T KOG0329|consen 259 QQYYVKLKENEKNR----KLNDLLDVLEFNQVVIFVKSVQRL-------------------S------------------ 297 (387)
T ss_pred HHHHHhhhhhhhhh----hhhhhhhhhhhcceeEeeehhhhh-------------------h------------------
Confidence 33343322222111 122222222356788888765430 0
Q ss_pred cCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEEec
Q 011751 306 FAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLY 384 (478)
Q Consensus 306 ~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~ 384 (478)
| ..+ +|||+++.+|+||..++.|+| || .|-+..+|+||.|||||.| .|.++.+.
T Consensus 298 ---f---~kr-~vat~lfgrgmdiervNi~~N--------Yd----------mp~~~DtYlHrv~rAgrfGtkglaitfv 352 (387)
T KOG0329|consen 298 ---F---QKR-LVATDLFGRGMDIERVNIVFN--------YD----------MPEDSDTYLHRVARAGRFGTKGLAITFV 352 (387)
T ss_pred ---h---hhh-hHHhhhhccccCcccceeeec--------cC----------CCCCchHHHHHhhhhhccccccceeehh
Confidence 1 123 899999999999999999999 88 6899999999999999999 89999999
Q ss_pred CHhhH
Q 011751 385 PENEF 389 (478)
Q Consensus 385 ~~~~~ 389 (478)
+.+.-
T Consensus 353 s~e~d 357 (387)
T KOG0329|consen 353 SDEND 357 (387)
T ss_pred cchhh
Confidence 76543
No 106
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.82 E-value=5.2e-19 Score=182.22 Aligned_cols=308 Identities=19% Similarity=0.189 Sum_probs=206.3
Q ss_pred CCcHHHHHHHHHHHhcC----CEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCC
Q 011751 13 LPIASVEKRLVEEVRKN----DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELG 88 (478)
Q Consensus 13 ~~~~~~q~~~~~~l~~~----~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~ 88 (478)
..+.+-|+.+...+.+. +..++.|.||||||-+...++..... +|+.++++.|-.++..|+.+++...++.++.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~--~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~ 274 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA--QGKQVLVLVPEIALTPQLLARFKARFGAKVA 274 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH--cCCEEEEEeccccchHHHHHHHHHHhCCChh
Confidence 45667888888888766 78999999999999777777766543 3778999999999999999999999985543
Q ss_pred CEEEEEEeecccCChhhhHHHHhhC----------------cCcCCCcceEeecccccchhhhHH-HHHHHHHHHhhccc
Q 011751 89 QRVGYSIRFDDRTSTSTRIKEALLD----------------PYLSRYSAIIVDEAHERTVHTDVL-LGLLKKVQNARSKS 151 (478)
Q Consensus 89 ~~vg~~~~~~~~~~~~~~~~~~l~~----------------~~l~~~~~lIiDE~H~r~~~~~~~-l~~l~~~~~~~~~~ 151 (478)
. +++..+...+...|..- .-+.++++||+||=|+.++-.+-- .--.|.+...|.+.
T Consensus 275 v-------lHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~ 347 (730)
T COG1198 275 V-------LHSGLSPGERYRVWRRARRGEARVVIGTRSALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKK 347 (730)
T ss_pred h-------hcccCChHHHHHHHHHHhcCCceEEEEechhhcCchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHH
Confidence 3 34556666666655421 127899999999999755433221 11234443333211
Q ss_pred ccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChhHHHhhhCC-CCeEEeCCccc---cceE
Q 011751 152 ADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGC-AKAVHVQGRQF---PVEI 227 (478)
Q Consensus 152 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~-~~~~~~~~~~~---~~~~ 227 (478)
.++++|+-|||+..|.+.+...+ ...+.+..+.. +.++
T Consensus 348 --------------------------------------~~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~v 389 (730)
T COG1198 348 --------------------------------------ENAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRV 389 (730)
T ss_pred --------------------------------------hCCCEEEecCCCCHHHHHhhhcCceEEEEccccccccCCCcc
Confidence 56889999999998887766443 23333333322 2233
Q ss_pred EecCCCC----cc--hHHHHHHHHHHhhhcCCCCCEEEEcCCHH------------------------------------
Q 011751 228 LYTLYPE----PD--YLDATLITIFQVHLDEAPGDILVFLTGQE------------------------------------ 265 (478)
Q Consensus 228 ~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~LVF~~s~~------------------------------------ 265 (478)
...+... .+ +-...+..+.... +.+.++|+|+|.|.
T Consensus 390 ~iiDmr~e~~~~~~~lS~~Ll~~i~~~l--~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~ 467 (730)
T COG1198 390 EIIDMRKEPLETGRSLSPALLEAIRKTL--ERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHY 467 (730)
T ss_pred eEEeccccccccCccCCHHHHHHHHHHH--hcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCC
Confidence 3222211 11 1222333332222 23667888887763
Q ss_pred ------------------------HHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHH--HHHhhcCcCCCCccEEEEe
Q 011751 266 ------------------------EIESVERLVQERLLQLPEASRKLVTVPIFSSLPSE--QQMRVFAPAAAGFRKVILA 319 (478)
Q Consensus 266 ------------------------~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~--~r~~i~~~f~~g~~~vlva 319 (478)
.++++++.|.+.+. +..+..+.++.... .-+..+..|.+|+.+|||-
T Consensus 468 Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP-------~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiG 540 (730)
T COG1198 468 CGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFP-------GARIIRIDSDTTRRKGALEDLLDQFANGEADILIG 540 (730)
T ss_pred CCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCC-------CCcEEEEccccccchhhHHHHHHHHhCCCCCeeec
Confidence 45666666666543 66677777766543 3456788999999999999
Q ss_pred ccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEE
Q 011751 320 TNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFR 382 (478)
Q Consensus 320 T~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~ 382 (478)
|.+++.|.|+|+++.|.-.+ -|...+..+++....+...+.|-+|||||.+ +|.++.
T Consensus 541 TQmiaKG~~fp~vtLVgvl~------aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvI 598 (730)
T COG1198 541 TQMIAKGHDFPNVTLVGVLD------ADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVI 598 (730)
T ss_pred chhhhcCCCcccceEEEEEe------chhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEE
Confidence 99999999999999874200 4444555666666677788999999999996 887654
No 107
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=1.7e-17 Score=172.81 Aligned_cols=178 Identities=17% Similarity=0.165 Sum_probs=114.9
Q ss_pred eEEEEcCCC--ChhHHHhhhCCCCeEEeCCccccceEEecCC----CCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHH
Q 011751 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILYTLY----PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE 266 (478)
Q Consensus 193 ~~i~lSAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~ 266 (478)
++-+||.|. ..++|.+.++ -+++.+|... |+.-...++ ...+...+.+..+...+ ..+.|+||||+|.+.
T Consensus 381 kLsGMTGTa~te~~Ef~~iY~-l~Vv~IPtnk-p~~R~d~~d~v~~t~~~k~~av~~~i~~~~--~~g~PVLVgt~Sie~ 456 (896)
T PRK13104 381 KLSGMTGTADTEAYEFQQIYN-LEVVVIPTNR-SMIRKDEADLVYLTQADKFQAIIEDVRECG--VRKQPVLVGTVSIEA 456 (896)
T ss_pred hhccCCCCChhHHHHHHHHhC-CCEEECCCCC-CcceecCCCeEEcCHHHHHHHHHHHHHHHH--hCCCCEEEEeCcHHH
Confidence 567899998 4456666664 3455555422 221111111 12223344445554444 358899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCC---eEE-EEeCCccc
Q 011751 267 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPG---IKY-VIDPGFVK 342 (478)
Q Consensus 267 ~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~---v~~-VI~~g~~~ 342 (478)
++.+++.|.+. ++....+|+.+.+.++..+.++|+.|. |+||||+++||+||.= ... +.+.-...
T Consensus 457 sE~ls~~L~~~---------gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~ 525 (896)
T PRK13104 457 SEFLSQLLKKE---------NIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADA 525 (896)
T ss_pred HHHHHHHHHHc---------CCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccch
Confidence 99999999987 899999999999999999999999994 9999999999999841 000 00000000
Q ss_pred ---------------ceeecCCCCcccc-eeeecCHHHHHHhhcccCCCC-CCeEEEecC
Q 011751 343 ---------------ARLYDPVKGMESL-LVVPISKAQALQRSGRAGREG-PGKCFRLYP 385 (478)
Q Consensus 343 ---------------~~~yd~~~~~~~~-~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~ 385 (478)
...--...|+... ...+.|..-=.|-.|||||.| +|.+-.+++
T Consensus 526 ~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lS 585 (896)
T PRK13104 526 SEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLS 585 (896)
T ss_pred hhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEE
Confidence 0000001222211 224567777899999999999 898766664
No 108
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=2.7e-17 Score=171.17 Aligned_cols=167 Identities=22% Similarity=0.240 Sum_probs=114.0
Q ss_pred eEEEEcCCC--ChhHHHhhhCCCCeEEeCCccccceEEecCC----CCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHH
Q 011751 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILYTLY----PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE 266 (478)
Q Consensus 193 ~~i~lSAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~ 266 (478)
++.+||.|. ..++|.+.++ ..++.+|... |+.....+. ...+........+...+ ..+.++||||+|.+.
T Consensus 367 kl~GmTGTa~te~~E~~~iY~-l~vv~IPtnk-p~~r~d~~d~i~~t~~~K~~aI~~~I~~~~--~~grpVLIft~Si~~ 442 (830)
T PRK12904 367 KLAGMTGTADTEAEEFREIYN-LDVVVIPTNR-PMIRIDHPDLIYKTEKEKFDAVVEDIKERH--KKGQPVLVGTVSIEK 442 (830)
T ss_pred hhcccCCCcHHHHHHHHHHhC-CCEEEcCCCC-CeeeeeCCCeEEECHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHH
Confidence 578899999 3445666554 3455655422 222211111 11122333333333333 447899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCe--------------
Q 011751 267 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGI-------------- 332 (478)
Q Consensus 267 ~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v-------------- 332 (478)
++.+++.|.+. ++....+||. +.+|+..+..|+.+...|+||||+|+||+||+==
T Consensus 443 se~Ls~~L~~~---------gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~ 511 (830)
T PRK12904 443 SELLSKLLKKA---------GIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEE 511 (830)
T ss_pred HHHHHHHHHHC---------CCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhh
Confidence 99999999986 8889999995 7789999999999999999999999999999621
Q ss_pred ----------------EEEEeCCcccceeecCCCCcccce-eeecCHHHHHHhhcccCCCC-CCeEEEecC
Q 011751 333 ----------------KYVIDPGFVKARLYDPVKGMESLL-VVPISKAQALQRSGRAGREG-PGKCFRLYP 385 (478)
Q Consensus 333 ----------------~~VI~~g~~~~~~yd~~~~~~~~~-~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~ 385 (478)
.-|.. ..|+.... ..+.|..-=.|-.|||||.| +|.+-.+++
T Consensus 512 ~~~~~~~~~~~~~~~~~~v~~-----------~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lS 571 (830)
T PRK12904 512 TEEQIAKIKAEWQEEHEEVLE-----------AGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLS 571 (830)
T ss_pred hhHHHHHHHHHHhhhhhhHHH-----------cCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEE
Confidence 11111 12222222 23677788899999999999 898776664
No 109
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.77 E-value=1.2e-18 Score=163.14 Aligned_cols=108 Identities=19% Similarity=0.348 Sum_probs=98.8
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCe
Q 011751 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGI 332 (478)
Q Consensus 253 ~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v 332 (478)
...+.|+||.|+.+|+.+.+++++.-+. .+.+.++||+..+.||++-++.|+.+.++.+||||++++|+||-++
T Consensus 504 ~mdkaiifcrtk~dcDnLer~~~qkgg~------~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~ 577 (725)
T KOG0349|consen 504 AMDKAIIFCRTKQDCDNLERMMNQKGGK------HYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGL 577 (725)
T ss_pred ccCceEEEEeccccchHHHHHHHHcCCc------cceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCC
Confidence 3678999999999999999999887442 7889999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEEec
Q 011751 333 KYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLY 384 (478)
Q Consensus 333 ~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~ 384 (478)
-++|| .+.|.++.+|+||+||+||.. -|.++.|+
T Consensus 578 p~~in------------------vtlpd~k~nyvhrigrvgraermglaislv 612 (725)
T KOG0349|consen 578 PFMIN------------------VTLPDDKTNYVHRIGRVGRAERMGLAISLV 612 (725)
T ss_pred ceEEE------------------EecCcccchhhhhhhccchhhhcceeEEEe
Confidence 99998 446889999999999999988 78888887
No 110
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.74 E-value=1.4e-17 Score=160.76 Aligned_cols=277 Identities=24% Similarity=0.257 Sum_probs=167.0
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeeccc---CChh
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDR---TSTS 104 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~---~~~~ 104 (478)
..+.+.-+|||.||||+-+.+-+... +..++.-|.|.+|.++++++.+ .|..+....|-...+... ....
T Consensus 190 ~RkIi~H~GPTNSGKTy~ALqrl~~a------ksGvycGPLrLLA~EV~~r~na-~gipCdL~TGeE~~~~~~~~~~a~h 262 (700)
T KOG0953|consen 190 RRKIIMHVGPTNSGKTYRALQRLKSA------KSGVYCGPLRLLAHEVYDRLNA-LGIPCDLLTGEERRFVLDNGNPAQH 262 (700)
T ss_pred hheEEEEeCCCCCchhHHHHHHHhhh------ccceecchHHHHHHHHHHHhhh-cCCCccccccceeeecCCCCCcccc
Confidence 34567779999999998776655443 4578899999999999998754 454443433322211111 0000
Q ss_pred -hhHHHHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccCCCCCCCCCCCchhhhccCCCCCCcccccc
Q 011751 105 -TRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQ 183 (478)
Q Consensus 105 -~~~~~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 183 (478)
....++. ..-..+++.||||++ ||-|..||..|-+.+-.
T Consensus 263 vScTVEM~--sv~~~yeVAViDEIQ--------------------------------------mm~Dp~RGwAWTrALLG 302 (700)
T KOG0953|consen 263 VSCTVEMV--SVNTPYEVAVIDEIQ--------------------------------------MMRDPSRGWAWTRALLG 302 (700)
T ss_pred eEEEEEEe--ecCCceEEEEehhHH--------------------------------------hhcCcccchHHHHHHHh
Confidence 0000111 123458999999997 45555555554443322
Q ss_pred ccCCCCCCceEEEEcCCC-ChhHHHhhhCCCCeEEeCCccccceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcC
Q 011751 184 CQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLT 262 (478)
Q Consensus 184 ~~~~~~~~~~~i~lSAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~ 262 (478)
+.. ..+.+.+=-|.+ =++.+.+-.|+.-.+..-++.-|+.+. + .+..-...-.+|.++| |=
T Consensus 303 l~A---dEiHLCGepsvldlV~~i~k~TGd~vev~~YeRl~pL~v~----------~----~~~~sl~nlk~GDCvV-~F 364 (700)
T KOG0953|consen 303 LAA---DEIHLCGEPSVLDLVRKILKMTGDDVEVREYERLSPLVVE----------E----TALGSLSNLKPGDCVV-AF 364 (700)
T ss_pred hhh---hhhhccCCchHHHHHHHHHhhcCCeeEEEeecccCcceeh----------h----hhhhhhccCCCCCeEE-Ee
Confidence 221 112222222222 223343333433222222222222211 1 1122222334666665 33
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCC--CccEEEEeccccccccccCCeEEEEeCCc
Q 011751 263 GQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAA--GFRKVILATNIAETSVTIPGIKYVIDPGF 340 (478)
Q Consensus 263 s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~--g~~~vlvaT~~~~~Gvdip~v~~VI~~g~ 340 (478)
|++++-.+...+.+.. +..++.++|++|++.|.+=-..|.+ +..+|+||||+..+|+|+ +|+.||=+-+
T Consensus 365 Skk~I~~~k~kIE~~g--------~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl 435 (700)
T KOG0953|consen 365 SKKDIFTVKKKIEKAG--------NHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSL 435 (700)
T ss_pred ehhhHHHHHHHHHHhc--------CcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeec
Confidence 7889999999998872 3448888999999988776667754 889999999999999999 6777774222
Q ss_pred ccceeecCCCCcccceeeecCHHHHHHhhcccCCCC----CCeEEEecCHh
Q 011751 341 VKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG----PGKCFRLYPEN 387 (478)
Q Consensus 341 ~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~----~G~~~~l~~~~ 387 (478)
.+ |+ .-.+.+++.++..|-+|||||.| .|.+..+..++
T Consensus 436 ~K---ys------g~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 436 IK---YS------GRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSED 477 (700)
T ss_pred cc---CC------cccceeccHHHHHHHhhcccccccCCcCceEEEeeHhh
Confidence 22 22 23457899999999999999998 68888887554
No 111
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.72 E-value=1.6e-15 Score=153.88 Aligned_cols=332 Identities=14% Similarity=0.146 Sum_probs=182.7
Q ss_pred CCcHHHHHHHHHHH----hcCC-EEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcC
Q 011751 13 LPIASVEKRLVEEV----RKND-ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVEL 87 (478)
Q Consensus 13 ~~~~~~q~~~~~~l----~~~~-~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~ 87 (478)
..++.+|..++..+ .+|+ -++++..||+|||..+..++.........+++++++-+.+|+.|....+.......
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~- 242 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFG- 242 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCc-
Confidence 34667888776554 4443 48889999999996665666544434446789999999999999987766554321
Q ss_pred CCEEEEEEe----e--cccCChhhhHHHHhhC-------cCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccC
Q 011751 88 GQRVGYSIR----F--DDRTSTSTRIKEALLD-------PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADG 154 (478)
Q Consensus 88 ~~~vg~~~~----~--~~~~~~~~~~~~~l~~-------~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~ 154 (478)
..+..... . ....++...+...... -....+++|||||||- ++.++..
T Consensus 243 -~~~n~i~~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR---------gi~~~~~--------- 303 (875)
T COG4096 243 -TKMNKIEDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR---------GIYSEWS--------- 303 (875)
T ss_pred -cceeeeecccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhh---------hHHhhhH---------
Confidence 11111110 1 1112222222211111 1244589999999992 1111110
Q ss_pred CCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC-ChhHH--HhhhCCCCeEEeC-------Ccccc
Q 011751 155 HSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGF--SEYFGCAKAVHVQ-------GRQFP 224 (478)
Q Consensus 155 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~-~~~~~--~~~~~~~~~~~~~-------~~~~~ 224 (478)
.++.+ -+.-.++++||+ +..+. -.||++.|+...+ +-..|
T Consensus 304 ------------------------~I~dY------FdA~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvp 353 (875)
T COG4096 304 ------------------------SILDY------FDAATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVP 353 (875)
T ss_pred ------------------------HHHHH------HHHHHHhhccCcccccccccccccCCCcceeecHHHHhhccccCC
Confidence 11111 112345569998 32222 2566443332221 11111
Q ss_pred -----ceEEecC------------------C--C--------------CcchHHHHHHHHHHhhhc--C--CCCCEEEEc
Q 011751 225 -----VEILYTL------------------Y--P--------------EPDYLDATLITIFQVHLD--E--APGDILVFL 261 (478)
Q Consensus 225 -----~~~~~~~------------------~--~--------------~~~~~~~~~~~~~~~~~~--~--~~~~~LVF~ 261 (478)
+...+.. . . .+...+.....+...... . ..+++||||
T Consensus 354 y~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa 433 (875)
T COG4096 354 YKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFA 433 (875)
T ss_pred CCceEEeeeccccCcCcCccchhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEe
Confidence 0000000 0 0 001122333344444433 1 257899999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcC-CCCccEEEEeccccccccccCCeEEEEeCCc
Q 011751 262 TGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPA-AAGFRKVILATNIAETSVTIPGIKYVIDPGF 340 (478)
Q Consensus 262 ~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f-~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~ 340 (478)
.+..+++.+...|.+...... +-.+..+.|.-.+.. ..+-+-+ ++..-+|.++.+++..|||+|.|..+|
T Consensus 434 ~n~dHAe~i~~~~~~~ype~~----~~~a~~IT~d~~~~q-~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlV---- 504 (875)
T COG4096 434 KNHDHAERIREALVNEYPEYN----GRYAMKITGDAEQAQ-ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLV---- 504 (875)
T ss_pred eCcHHHHHHHHHHHHhCcccc----CceEEEEeccchhhH-HHHHHHHhcCCCCceEEehhhhhcCCCchheeeee----
Confidence 999999999999998765422 334555555544332 2222222 334458999999999999999998888
Q ss_pred ccceeecCCCCcccceeeecCHHHHHHhhcccCCCC--CC-----e-EEEec---CHhhHhcccCCCCCcccccCchHHH
Q 011751 341 VKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG--PG-----K-CFRLY---PENEFDKLEDSTKPEIKRCNLSNVI 409 (478)
Q Consensus 341 ~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~--~G-----~-~~~l~---~~~~~~~~~~~~~pei~~~~l~~~~ 409 (478)
|+. .-.|..-|.||+||+-|.. -| + .|.++ .--.|-.+.+...+.-.+..+.+-+
T Consensus 505 -----F~r---------~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~~~~~~~~~~~~~~e~~~~~~l~~rL 570 (875)
T COG4096 505 -----FDR---------KVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFVDNTEYFEMDPEMREGRVRVSLEQRL 570 (875)
T ss_pred -----ehh---------hhhhHHHHHHHhcCccccCccccCccccceeEEEEEhhhhhhhhccCcccccccccchHHHHH
Confidence 442 2468889999999999976 23 2 34444 3333444555555555555555555
Q ss_pred HHHHHcCC
Q 011751 410 LQLKALGV 417 (478)
Q Consensus 410 l~~~~~~~ 417 (478)
+.......
T Consensus 571 F~~~~~~~ 578 (875)
T COG4096 571 FADRLFDL 578 (875)
T ss_pred hhhhhccC
Confidence 44444333
No 112
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.72 E-value=2e-17 Score=159.75 Aligned_cols=316 Identities=16% Similarity=0.071 Sum_probs=186.8
Q ss_pred HHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCc
Q 011751 7 LQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVE 86 (478)
Q Consensus 7 ~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~ 86 (478)
++....-.-+.+|.+++..+.+|+++++.-.|.|||+++......+..........++..|+.++++...+-..-....-
T Consensus 279 ~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I 358 (1034)
T KOG4150|consen 279 LNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVI 358 (1034)
T ss_pred HhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEeh
Confidence 33333345677899999999999999999999999995443322222222223346677777777654332100000000
Q ss_pred CCCEEEEEEeecccCChhh-hHH----------------HHhhC-----cCcCCCcceEeecccccchhh-----hHHHH
Q 011751 87 LGQRVGYSIRFDDRTSTST-RIK----------------EALLD-----PYLSRYSAIIVDEAHERTVHT-----DVLLG 139 (478)
Q Consensus 87 ~~~~vg~~~~~~~~~~~~~-~~~----------------~~l~~-----~~l~~~~~lIiDE~H~r~~~~-----~~~l~ 139 (478)
....-.|....+....+.. .+. .++.+ -.+-...+++.||+|..-..+ +.+..
T Consensus 359 ~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~ 438 (1034)
T KOG4150|consen 359 KARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRA 438 (1034)
T ss_pred hhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHH
Confidence 0000112212222221111 111 12211 123345678899999532222 22222
Q ss_pred HHHHHHHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC--ChhHHHhhhCCC--Ce
Q 011751 140 LLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSEYFGCA--KA 215 (478)
Q Consensus 140 ~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~--~~~~~~~~~~~~--~~ 215 (478)
+++-+.... ...+.+++-.|||. ......+.++-. ..
T Consensus 439 L~~L~~~F~---------------------------------------~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~L 479 (1034)
T KOG4150|consen 439 LSDLIKGFE---------------------------------------ASINMGVYDGDTPYKDRTRLRSELANLSELEL 479 (1034)
T ss_pred HHHHHHHHH---------------------------------------hhcCcceEeCCCCcCCHHHHHHHhcCCcceEE
Confidence 222222221 11678999999999 445566676644 35
Q ss_pred EEeCCccccceEEe--cCC--CCc-chHHHHHHHHHHhh--hcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCe
Q 011751 216 VHVQGRQFPVEILY--TLY--PEP-DYLDATLITIFQVH--LDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKL 288 (478)
Q Consensus 216 ~~~~~~~~~~~~~~--~~~--~~~-~~~~~~~~~~~~~~--~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~ 288 (478)
+..++.+..-+... .+. |.. ...+..+..+.++. ....+-++|.||++++-|+.+....++.+.....+. --
T Consensus 480 i~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~L-V~ 558 (1034)
T KOG4150|consen 480 VTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHL-VE 558 (1034)
T ss_pred EEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHH-HH
Confidence 66666554433332 221 111 11111222222221 112367899999999999988777666543222100 11
Q ss_pred EEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHh
Q 011751 289 VTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQR 368 (478)
Q Consensus 289 ~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr 368 (478)
.+..+.||...++|++|+...-.|++.-+|||+.+|.||||...+.|+.+|+ |.|.++++|.
T Consensus 559 ~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GF------------------P~S~aNl~QQ 620 (1034)
T KOG4150|consen 559 AITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGF------------------PGSIANLWQQ 620 (1034)
T ss_pred HHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccC------------------chhHHHHHHH
Confidence 3556789999999999999988999999999999999999999999999995 9999999999
Q ss_pred hcccCCCC-CCeE
Q 011751 369 SGRAGREG-PGKC 380 (478)
Q Consensus 369 ~GRaGR~~-~G~~ 380 (478)
.|||||.. +..+
T Consensus 621 ~GRAGRRNk~SLa 633 (1034)
T KOG4150|consen 621 AGRAGRRNKPSLA 633 (1034)
T ss_pred hccccccCCCceE
Confidence 99999988 4443
No 113
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.70 E-value=2.3e-15 Score=145.27 Aligned_cols=170 Identities=16% Similarity=0.138 Sum_probs=123.9
Q ss_pred CceEEEEcCCCChhHHHhhhCCCCeEEeCCccccceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHH
Q 011751 191 PLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESV 270 (478)
Q Consensus 191 ~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l 270 (478)
..|+|..|||+...++..-=+.. +-.+-.+..-++......|...-++..+..+..... .+.++||-+=|++-++.+
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~~v-veQiIRPTGLlDP~ievRp~~~QvdDL~~EI~~r~~--~~eRvLVTtLTKkmAEdL 462 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGGNV-VEQIIRPTGLLDPEIEVRPTKGQVDDLLSEIRKRVA--KNERVLVTTLTKKMAEDL 462 (663)
T ss_pred cCCEEEEECCCChHHHHhccCce-eEEeecCCCCCCCceeeecCCCcHHHHHHHHHHHHh--cCCeEEEEeehHHHHHHH
Confidence 46899999999665554322111 111111111111111122333344555555544332 367899999999999999
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCC
Q 011751 271 ERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVK 350 (478)
Q Consensus 271 ~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~ 350 (478)
.++|.+. ++.+..+|+.+..-+|.+++...+.|..+|||.-|.+-.|+|+|.|..|-- .|...
T Consensus 463 T~Yl~e~---------gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAI--------lDADK 525 (663)
T COG0556 463 TEYLKEL---------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAI--------LDADK 525 (663)
T ss_pred HHHHHhc---------CceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEE--------eecCc
Confidence 9999997 999999999999999999999999999999999999999999999999964 55432
Q ss_pred CcccceeeecCHHHHHHhhcccCCCCCCeEEEecC
Q 011751 351 GMESLLVVPISKAQALQRSGRAGREGPGKCFRLYP 385 (478)
Q Consensus 351 ~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~ 385 (478)
.-+..|..+.+|=+|||.|.-+|+++...+
T Consensus 526 -----eGFLRse~SLIQtIGRAARN~~GkvIlYAD 555 (663)
T COG0556 526 -----EGFLRSERSLIQTIGRAARNVNGKVILYAD 555 (663)
T ss_pred -----cccccccchHHHHHHHHhhccCCeEEEEch
Confidence 114577888999999999999999987663
No 114
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=1.4e-15 Score=158.14 Aligned_cols=167 Identities=23% Similarity=0.217 Sum_probs=114.2
Q ss_pred eEEEEcCCC--ChhHHHhhhCCCCeEEeCCccccceEEecCC----CCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHH
Q 011751 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILYTLY----PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE 266 (478)
Q Consensus 193 ~~i~lSAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~ 266 (478)
++-+||.|. ...+|.+.++ -.++.+|... |+.-....+ .......+.+..+..++. .+.++||||+|.+.
T Consensus 386 kL~GMTGTa~te~~Ef~~iY~-l~Vv~IPTnk-p~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~--~GrpVLV~t~sv~~ 461 (908)
T PRK13107 386 KLAGMTGTADTEAFEFQHIYG-LDTVVVPTNR-PMVRKDMADLVYLTADEKYQAIIKDIKDCRE--RGQPVLVGTVSIEQ 461 (908)
T ss_pred HhhcccCCChHHHHHHHHHhC-CCEEECCCCC-CccceeCCCcEEeCHHHHHHHHHHHHHHHHH--cCCCEEEEeCcHHH
Confidence 567889888 3445555554 3455555422 211111111 112333455555555553 48899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCC---eE----------
Q 011751 267 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPG---IK---------- 333 (478)
Q Consensus 267 ~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~---v~---------- 333 (478)
++.++..|.+. ++....+|+.+.+.++..+.++|+.|. |+||||+++||.||.= ..
T Consensus 462 se~ls~~L~~~---------gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~ 530 (908)
T PRK13107 462 SELLARLMVKE---------KIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPT 530 (908)
T ss_pred HHHHHHHHHHC---------CCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchh
Confidence 99999999987 888899999999999999999999998 9999999999999841 00
Q ss_pred ----------------EEEeCCcccceeecCCCCcccc-eeeecCHHHHHHhhcccCCCC-CCeEEEecC
Q 011751 334 ----------------YVIDPGFVKARLYDPVKGMESL-LVVPISKAQALQRSGRAGREG-PGKCFRLYP 385 (478)
Q Consensus 334 ----------------~VI~~g~~~~~~yd~~~~~~~~-~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~ 385 (478)
-|.. ..|+... ...+.|..-=.|-.|||||.| +|.+-.+++
T Consensus 531 ~~~~~~~~~~~~~~~~~V~~-----------~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lS 589 (908)
T PRK13107 531 AEQKAKIKADWQIRHDEVVA-----------AGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLS 589 (908)
T ss_pred hHHHHHHHHHHHhhHHHHHH-----------cCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEE
Confidence 0110 0111111 124566777789999999999 898776664
No 115
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.69 E-value=6.9e-16 Score=161.86 Aligned_cols=111 Identities=19% Similarity=0.202 Sum_probs=100.1
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCe
Q 011751 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGI 332 (478)
Q Consensus 253 ~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v 332 (478)
.+.+++|||+|++.++.++..|.+. ++.+..+||++++.+|..+++.|++|...|+|||+++++|+|+|++
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~---------gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v 515 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKEL---------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEV 515 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhc---------ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCC
Confidence 4778999999999999999999886 8899999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCCCCeEEEecC
Q 011751 333 KYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYP 385 (478)
Q Consensus 333 ~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~ 385 (478)
++||. +|... ...|.+..+|+||+|||||...|.|+.+++
T Consensus 516 ~lVii--------~d~ei-----fG~~~~~~~yiqr~GR~gR~~~G~~i~~~~ 555 (652)
T PRK05298 516 SLVAI--------LDADK-----EGFLRSERSLIQTIGRAARNVNGKVILYAD 555 (652)
T ss_pred cEEEE--------eCCcc-----cccCCCHHHHHHHhccccCCCCCEEEEEec
Confidence 99998 55321 113678899999999999988999999997
No 116
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.67 E-value=7.7e-15 Score=154.56 Aligned_cols=99 Identities=12% Similarity=0.099 Sum_probs=71.7
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHH---------------------HHHhhcCcCCC-
Q 011751 254 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSE---------------------QQMRVFAPAAA- 311 (478)
Q Consensus 254 ~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~---------------------~r~~i~~~f~~- 311 (478)
+++.+|||.++..|..+++.|.+...... +.....++++.+.+ ....+.+.|++
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~----~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~ 589 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKF----EASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKE 589 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhccccc----CCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCC
Confidence 58999999999999999999877643210 12233334432221 12356777765
Q ss_pred CccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCC
Q 011751 312 GFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGRE 375 (478)
Q Consensus 312 g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~ 375 (478)
+..+|+|.++.+.+|+|.|.+.+++ .| .|..-..++|.+||+-|.
T Consensus 590 ~~~~ilIVvdmllTGFDaP~l~tLy---------ld----------Kplk~h~LlQai~R~nR~ 634 (667)
T TIGR00348 590 ENPKLLIVVDMLLTGFDAPILNTLY---------LD----------KPLKYHGLLQAIARTNRI 634 (667)
T ss_pred CCceEEEEEcccccccCCCccceEE---------Ee----------ccccccHHHHHHHHhccc
Confidence 6789999999999999999999987 44 344455689999999994
No 117
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.66 E-value=7.7e-15 Score=151.38 Aligned_cols=291 Identities=20% Similarity=0.245 Sum_probs=177.3
Q ss_pred hHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhC
Q 011751 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (478)
Q Consensus 5 ~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (478)
+..+....+.++..|+--...+..|+++.++||||.||||....+.+-.+ .++++++++.||+.|+.|+.+++.+...
T Consensus 73 ~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a--~kgkr~yii~PT~~Lv~Q~~~kl~~~~e 150 (1187)
T COG1110 73 EFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLA--KKGKRVYIIVPTTTLVRQVYERLKKFAE 150 (1187)
T ss_pred HHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHH--hcCCeEEEEecCHHHHHHHHHHHHHHHh
Confidence 45556667799999999999999999999999999999977655554332 2367899999999999999999876543
Q ss_pred Cc--CCCEEEEEEeecccCChhh------hHH-----------HHhhC--cCcC--CCcceEeecccc---cchhhhHHH
Q 011751 85 VE--LGQRVGYSIRFDDRTSTST------RIK-----------EALLD--PYLS--RYSAIIVDEAHE---RTVHTDVLL 138 (478)
Q Consensus 85 ~~--~~~~vg~~~~~~~~~~~~~------~~~-----------~~l~~--~~l~--~~~~lIiDE~H~---r~~~~~~~l 138 (478)
.. ....+.|+ +..+... ++. .++.. ..+. +++++++|.++. .+...|.++
T Consensus 151 ~~~~~~~~~~yh----~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~LkaskNvDriL 226 (1187)
T COG1110 151 DAGSLDVLVVYH----SALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAILKASKNVDRLL 226 (1187)
T ss_pred hcCCcceeeeec----cccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHHHhccccHHHHH
Confidence 22 11222232 3322222 111 11111 1133 699999999984 333444444
Q ss_pred HHHH----------HHHHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccc----cCCCCCCceEEEEcCCCChh
Q 011751 139 GLLK----------KVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQC----QGRKFAPLKLIIMSASLDAR 204 (478)
Q Consensus 139 ~~l~----------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~lSAT~~~~ 204 (478)
.++- ++...+.+.. . ......+.+.+... ........++|..|||..+.
T Consensus 227 ~LlGf~eE~i~~a~~~~~lr~~~~-----~------------~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~r 289 (1187)
T COG1110 227 RLLGFSEEVIESAYELIKLRRKLY-----G------------EKRAERVREELREVEREREKKRRKLGILVVSSATGKPR 289 (1187)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhh-----h------------hhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCC
Confidence 3331 1111111000 0 00000001111110 00112456899999999332
Q ss_pred -----HHHhhhCCCCeEEeCC---ccccceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCC---HHHHHHHHHH
Q 011751 205 -----GFSEYFGCAKAVHVQG---RQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTG---QEEIESVERL 273 (478)
Q Consensus 205 -----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s---~~~~~~l~~~ 273 (478)
.|.+.+|=. +.+ ....+.-.|... ...+.....+.. . +...|||+|. ++.++++++.
T Consensus 290 g~R~~LfReLlgFe----vG~~~~~LRNIvD~y~~~---~~~e~~~elvk~----l-G~GgLIfV~~d~G~e~aeel~e~ 357 (1187)
T COG1110 290 GSRLKLFRELLGFE----VGSGGEGLRNIVDIYVES---ESLEKVVELVKK----L-GDGGLIFVPIDYGREKAEELAEY 357 (1187)
T ss_pred CchHHHHHHHhCCc----cCccchhhhheeeeeccC---ccHHHHHHHHHH----h-CCCeEEEEEcHHhHHHHHHHHHH
Confidence 344555411 111 112222222222 223332322222 2 5579999999 8999999999
Q ss_pred HHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEecc----ccccccccC-CeEEEEeCCcccce
Q 011751 274 VQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN----IAETSVTIP-GIKYVIDPGFVKAR 344 (478)
Q Consensus 274 l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~----~~~~Gvdip-~v~~VI~~g~~~~~ 344 (478)
|++. ++.+..+|+. .++.++.|..|+++++|... ++-+|+|+| -++|+|=+|.++.+
T Consensus 358 Lr~~---------Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~r 419 (1187)
T COG1110 358 LRSH---------GINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKFR 419 (1187)
T ss_pred HHhc---------CceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCcee
Confidence 9987 8999999983 36789999999999998865 899999999 68999998887544
No 118
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.64 E-value=2.5e-15 Score=131.83 Aligned_cols=116 Identities=20% Similarity=0.179 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEE
Q 011751 16 ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSI 95 (478)
Q Consensus 16 ~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~ 95 (478)
+++|.++++.+.+|+++++.||||+|||+.+..+++......+...++++.|+++++.+..+++....... +..+....
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~ 79 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNT-NVRVVLLH 79 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTT-TSSEEEES
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccccccccccccc-cccccccc
Confidence 57999999999999999999999999998888777766554434589999999999999999988777652 22222111
Q ss_pred eecc---------------cCChhhhHHHHhhC--cCcCCCcceEeecccccch
Q 011751 96 RFDD---------------RTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTV 132 (478)
Q Consensus 96 ~~~~---------------~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~r~~ 132 (478)
.... ...+...+...+.. ..+.+++++|+||+|....
T Consensus 80 ~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~ 133 (169)
T PF00270_consen 80 GGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSD 133 (169)
T ss_dssp TTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHH
T ss_pred ccccccccccccccccccccccCcchhhccccccccccccceeeccCccccccc
Confidence 1000 01111222233332 2456699999999996554
No 119
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.64 E-value=1.1e-15 Score=128.09 Aligned_cols=104 Identities=27% Similarity=0.506 Sum_probs=94.6
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCe
Q 011751 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGI 332 (478)
Q Consensus 253 ~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v 332 (478)
+++++||||++...++.+++.|.+. ...+..+||+++..+|..+++.|.++..+++++|+++++|+|+|++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~ 97 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKP---------GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNV 97 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhc---------CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhC
Confidence 5789999999999999999999873 6789999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEEe
Q 011751 333 KYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRL 383 (478)
Q Consensus 333 ~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l 383 (478)
++||. ++ .|.+..++.|++||+||.| .|.|+.+
T Consensus 98 ~~vi~--------~~----------~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 98 SVVIN--------YD----------LPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CEEEE--------eC----------CCCCHHHheecccccccCCCCceEEeC
Confidence 99997 44 3788999999999999999 8887753
No 120
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.60 E-value=6.5e-16 Score=116.79 Aligned_cols=72 Identities=29% Similarity=0.473 Sum_probs=68.5
Q ss_pred CeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHH
Q 011751 287 KLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQAL 366 (478)
Q Consensus 287 ~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~ 366 (478)
++.+..+||+++.++|..+++.|.++..+|||||+++++|+|+|++++||. |+ .|.+..+|.
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~--------~~----------~~~~~~~~~ 68 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIF--------YD----------PPWSPEEYI 68 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEE--------SS----------SESSHHHHH
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccc--------cc----------cCCCHHHHH
Confidence 888999999999999999999999999999999999999999999999999 55 488999999
Q ss_pred HhhcccCCCC
Q 011751 367 QRSGRAGREG 376 (478)
Q Consensus 367 Qr~GRaGR~~ 376 (478)
|++||+||.|
T Consensus 69 Q~~GR~~R~g 78 (78)
T PF00271_consen 69 QRIGRAGRIG 78 (78)
T ss_dssp HHHTTSSTTT
T ss_pred HHhhcCCCCC
Confidence 9999999986
No 121
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.60 E-value=1.1e-13 Score=148.96 Aligned_cols=110 Identities=19% Similarity=0.190 Sum_probs=92.3
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCC---CccEEEEecccccccccc
Q 011751 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAA---GFRKVILATNIAETSVTI 329 (478)
Q Consensus 253 ~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~---g~~~vlvaT~~~~~Gvdi 329 (478)
.+.++|||+........+.+.|... ++....+||+++.++|..+++.|.+ +...+|++|.+.+.|+|+
T Consensus 486 ~g~KVLIFSQft~~LdiLed~L~~~---------g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINL 556 (1033)
T PLN03142 486 RDSRVLIFSQMTRLLDILEDYLMYR---------GYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINL 556 (1033)
T ss_pred cCCeEEeehhHHHHHHHHHHHHHHc---------CCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCch
Confidence 4678999999888888788877654 7888899999999999999999964 234678999999999999
Q ss_pred CCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCCC---CeEEEecCHhhH
Q 011751 330 PGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGP---GKCFRLYPENEF 389 (478)
Q Consensus 330 p~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~---G~~~~l~~~~~~ 389 (478)
...++||. || .|-++....|+.||+.|.|. =.+|+|++....
T Consensus 557 t~Ad~VIi--------yD----------~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTI 601 (1033)
T PLN03142 557 ATADIVIL--------YD----------SDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTI 601 (1033)
T ss_pred hhCCEEEE--------eC----------CCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcH
Confidence 99999998 88 46778889999999999993 347788865543
No 122
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.59 E-value=1.4e-14 Score=131.29 Aligned_cols=122 Identities=19% Similarity=0.129 Sum_probs=80.1
Q ss_pred HHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccC---CCcEEEEecchHHHHHHHHHHHHHHh
Q 011751 7 LQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR---DGKLIGVTQPRRVAAVTVAKRVAEES 83 (478)
Q Consensus 7 ~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~---~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (478)
++..+.-.++++|.++++.+.+|+++++++|||+|||..+...+....... ++.+++++.|++.++.|..+.+....
T Consensus 14 l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~ 93 (203)
T cd00268 14 IYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLG 93 (203)
T ss_pred HHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHh
Confidence 333344458999999999999999999999999999966555554443332 46689999999999999988876654
Q ss_pred CCcCCCEEEEEEeecc--------------cCChhhhHHHHhhC--cCcCCCcceEeecccc
Q 011751 84 GVELGQRVGYSIRFDD--------------RTSTSTRIKEALLD--PYLSRYSAIIVDEAHE 129 (478)
Q Consensus 84 ~~~~~~~vg~~~~~~~--------------~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~ 129 (478)
.. .+..+........ ...+...+...+.. ..+.+++++|+||+|.
T Consensus 94 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~ 154 (203)
T cd00268 94 KH-TNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADR 154 (203)
T ss_pred cc-CCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHH
Confidence 32 2233322111110 01122222222222 3467899999999994
No 123
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.58 E-value=2.8e-13 Score=141.51 Aligned_cols=167 Identities=19% Similarity=0.209 Sum_probs=100.8
Q ss_pred eEEEEcCCC--ChhHHHhhhCCCCeEEeCCccccceEEecCC----CCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHH
Q 011751 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILYTLY----PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE 266 (478)
Q Consensus 193 ~~i~lSAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~ 266 (478)
++.+||.|. ..++|.+.++ .+++.+|... |+....... .......+.+..+...+. .+.|+||-+.|.+.
T Consensus 505 kl~GmTGTa~~e~~Ef~~iY~-l~v~~iPt~k-p~~r~d~~d~iy~t~~~k~~ai~~ei~~~~~--~grPvLigt~si~~ 580 (970)
T PRK12899 505 KLAGMTGTAITESREFKEIYN-LYVLQVPTFK-PCLRIDHNDEFYMTEREKYHAIVAEIASIHR--KGNPILIGTESVEV 580 (970)
T ss_pred hhcccCCCCHHHHHHHHHHhC-CCEEECCCCC-CceeeeCCCcEecCHHHHHHHHHHHHHHHHh--CCCCEEEEeCcHHH
Confidence 567788888 3345555554 3455555322 211111111 112334455555555554 37889999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEe-CCccccee
Q 011751 267 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVID-PGFVKARL 345 (478)
Q Consensus 267 ~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~-~g~~~~~~ 345 (478)
.+.++..|.+. ++....+++.-...|-..|-++-+ .-.|.|||+++.||.||.==.-|.. -||...-
T Consensus 581 se~ls~~L~~~---------gi~h~vLNak~~~~Ea~iia~AG~--~g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIg- 648 (970)
T PRK12899 581 SEKLSRILRQN---------RIEHTVLNAKNHAQEAEIIAGAGK--LGAVTVATNMAGRGTDIKLDEEAVAVGGLYVIG- 648 (970)
T ss_pred HHHHHHHHHHc---------CCcceecccchhhhHHHHHHhcCC--CCcEEEeeccccCCcccccCchHHhcCCcEEEe-
Confidence 99999999886 666666666533333333333322 2479999999999999842111111 1111100
Q ss_pred ecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEEecC
Q 011751 346 YDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYP 385 (478)
Q Consensus 346 yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~ 385 (478)
...+.|..--.|-.|||||.| +|.+-.+++
T Consensus 649 ----------Ter~es~Rid~Ql~GRagRQGdpGss~f~lS 679 (970)
T PRK12899 649 ----------TSRHQSRRIDRQLRGRCARLGDPGAAKFFLS 679 (970)
T ss_pred ----------eccCchHHHHHHHhcccccCCCCCceeEEEE
Confidence 124678888899999999999 998776664
No 124
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.58 E-value=8.6e-14 Score=145.66 Aligned_cols=322 Identities=19% Similarity=0.155 Sum_probs=208.9
Q ss_pred HHHHHHHHHH-hcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEE
Q 011751 17 SVEKRLVEEV-RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSI 95 (478)
Q Consensus 17 ~~q~~~~~~l-~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~ 95 (478)
++|.++...+ ..++++++.+|+|||||.++.++++. .....+++++.|..+.+..++..+.+.++.-.|..+.-.
T Consensus 1146 ~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~---~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l- 1221 (1674)
T KOG0951|consen 1146 PIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR---PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKL- 1221 (1674)
T ss_pred CceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC---CccceEEEEecchHHHHHHHHHHHHHhhccccCceEEec-
Confidence 4555555554 46688999999999999999888887 223567999999999999888887777665545443311
Q ss_pred eeccc------------CChhhhHHHHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccCCCCCCCCCC
Q 011751 96 RFDDR------------TSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNE 163 (478)
Q Consensus 96 ~~~~~------------~~~~~~~~~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~ 163 (478)
.++.. .++..+. ..+ ...+++++.|.||.|. .++..|.
T Consensus 1222 ~ge~s~~lkl~~~~~vii~tpe~~-d~l--q~iQ~v~l~i~d~lh~---------------------------igg~~g~ 1271 (1674)
T KOG0951|consen 1222 TGETSLDLKLLQKGQVIISTPEQW-DLL--QSIQQVDLFIVDELHL---------------------------IGGVYGA 1271 (1674)
T ss_pred CCccccchHHhhhcceEEechhHH-HHH--hhhhhcceEeeehhhh---------------------------hcccCCc
Confidence 11111 1111111 122 2678899999999992 1233343
Q ss_pred CchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC-ChhHHHhhhCCCCeEEe--CCccccceEEecCCCCcchHHH
Q 011751 164 NSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHV--QGRQFPVEILYTLYPEPDYLDA 240 (478)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 240 (478)
..+.+.. +..+.....++++++.+|..+ |+.++. .+....++.+ ..++.|.+++........+...
T Consensus 1272 v~evi~S----------~r~ia~q~~k~ir~v~ls~~lana~d~i-g~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~ 1340 (1674)
T KOG0951|consen 1272 VYEVICS----------MRYIASQLEKKIRVVALSSSLANARDLI-GASSSGVFNFSPSVRPVPLEIHIQSVDISHFESR 1340 (1674)
T ss_pred eEEEEee----------HHHHHHHHHhheeEEEeehhhccchhhc-cccccceeecCcccCCCceeEEEEEeccchhHHH
Confidence 3333322 222223333778999999888 888872 2222223333 4566777777666555444333
Q ss_pred HHH-------HHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhc------------CC---CCCCCeEEEEccCCCC
Q 011751 241 TLI-------TIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQ------------LP---EASRKLVTVPIFSSLP 298 (478)
Q Consensus 241 ~~~-------~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~------------~~---~~~~~~~v~~~h~~l~ 298 (478)
.+. .+.... ..+++.+||+|+++++..++.-+-...-. .. .+.....|. |-+++
T Consensus 1341 ~~am~~~~~~ai~~~a--~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg--~e~~s 1416 (1674)
T KOG0951|consen 1341 MLAMTKPTYTAIVRHA--GNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVG--HEGLS 1416 (1674)
T ss_pred HHHhhhhHHHHHHHHh--cCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhccccccc--ccccC
Confidence 222 222211 35788999999999998887655432110 00 111222333 88999
Q ss_pred HHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCCCC
Q 011751 299 SEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPG 378 (478)
Q Consensus 299 ~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G 378 (478)
..++..+-..|..|.+.|+|...- ..|+-...--+||- .+..||...... .+.+.++.+||.|+|.| .|
T Consensus 1417 ~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvvm----gt~~ydg~e~~~----~~y~i~~ll~m~G~a~~--~~ 1485 (1674)
T KOG0951|consen 1417 SNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVVM----GTQYYDGKEHSY----EDYPIAELLQMVGLASG--AG 1485 (1674)
T ss_pred cchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEEe----cceeeccccccc----ccCchhHHHHHhhhhcC--Cc
Confidence 999999999999999999888777 88888876666664 678899766543 36888999999999988 67
Q ss_pred eEEEecC---HhhHhcccCCCCC
Q 011751 379 KCFRLYP---ENEFDKLEDSTKP 398 (478)
Q Consensus 379 ~~~~l~~---~~~~~~~~~~~~p 398 (478)
+|+.+.. +..|+++.....|
T Consensus 1486 k~vi~~~~~~k~yykkfl~e~lP 1508 (1674)
T KOG0951|consen 1486 KCVIMCHTPKKEYYKKFLYEPLP 1508 (1674)
T ss_pred cEEEEecCchHHHHHHhccCcCc
Confidence 7887773 4456666666655
No 125
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.56 E-value=3.3e-13 Score=146.67 Aligned_cols=183 Identities=20% Similarity=0.254 Sum_probs=109.6
Q ss_pred ceEEEEcCCCC----hhHHHhhhCCCCe--EEeCCcccc----ceEEec-CCC------CcchHHHHHHHHHHhhhcCCC
Q 011751 192 LKLIIMSASLD----ARGFSEYFGCAKA--VHVQGRQFP----VEILYT-LYP------EPDYLDATLITIFQVHLDEAP 254 (478)
Q Consensus 192 ~~~i~lSAT~~----~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~ 254 (478)
..+|++|||+. .+-+.+.+|-... ..+...+++ ..++.. ..+ ..++.+.....+..+... .+
T Consensus 596 ~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~-~~ 674 (850)
T TIGR01407 596 KSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAI-TS 674 (850)
T ss_pred CeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh-cC
Confidence 46899999994 3445566664321 122122222 111111 111 123444555555555443 36
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeE-
Q 011751 255 GDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIK- 333 (478)
Q Consensus 255 ~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~- 333 (478)
|++|||++|.+..+.++..|.+.... .++.+.. .+.. .+|..+++.|+++...||++|+.+.+|||+|+..
T Consensus 675 g~~LVlftS~~~l~~v~~~L~~~~~~-----~~~~~l~--q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l 746 (850)
T TIGR01407 675 PKILVLFTSYEMLHMVYDMLNELPEF-----EGYEVLA--QGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGL 746 (850)
T ss_pred CCEEEEeCCHHHHHHHHHHHhhhccc-----cCceEEe--cCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCce
Confidence 89999999999999999998753110 1333332 2222 4688899999999999999999999999999655
Q ss_pred -EEEeCCcccceeecC----------CCCcccc--eeeecCHHHHHHhhcccCCCC--CCeEEEe
Q 011751 334 -YVIDPGFVKARLYDP----------VKGMESL--LVVPISKAQALQRSGRAGREG--PGKCFRL 383 (478)
Q Consensus 334 -~VI~~g~~~~~~yd~----------~~~~~~~--~~~~~s~~~~~Qr~GRaGR~~--~G~~~~l 383 (478)
+||-.|++=..--|| ..|-..+ ...|.....+.|-+||.=|.. .|.++.+
T Consensus 747 ~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~il 811 (850)
T TIGR01407 747 VCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVIL 811 (850)
T ss_pred EEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEE
Confidence 455556542210011 0010111 123556677999999999988 5665544
No 126
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.55 E-value=2.9e-14 Score=149.19 Aligned_cols=163 Identities=20% Similarity=0.273 Sum_probs=116.5
Q ss_pred eEEEEcCCC--ChhHHHhhhCCCCeEEeCCccccceEEecCC----CCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHH
Q 011751 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILYTLY----PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE 266 (478)
Q Consensus 193 ~~i~lSAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~ 266 (478)
++-+||.|. ...+|.+.++ -.++.+|... |+.-....+ ...+.....+..+...+ ..+.++||||+|.+.
T Consensus 535 kLaGMTGTA~te~~Ef~~iY~-L~Vv~IPTnr-P~~R~D~~d~vy~t~~eK~~Ali~~I~~~~--~~grpVLIft~Sve~ 610 (1025)
T PRK12900 535 KLAGMTGTAETEASEFFEIYK-LDVVVIPTNK-PIVRKDMDDLVYKTRREKYNAIVLKVEELQ--KKGQPVLVGTASVEV 610 (1025)
T ss_pred hhcccCCCChhHHHHHHHHhC-CcEEECCCCC-CcceecCCCeEecCHHHHHHHHHHHHHHHh--hCCCCEEEEeCcHHH
Confidence 467888888 3445655554 3455555422 222111111 11122233333333333 348899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccC---CeEEE-----EeC
Q 011751 267 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIP---GIKYV-----IDP 338 (478)
Q Consensus 267 ~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip---~v~~V-----I~~ 338 (478)
++.+++.|.+. ++....+|+ .+.+|+..+..|+.+...|+||||+|+||+||+ +|..| |+
T Consensus 611 sE~Ls~~L~~~---------gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIg- 678 (1025)
T PRK12900 611 SETLSRMLRAK---------RIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILG- 678 (1025)
T ss_pred HHHHHHHHHHc---------CCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeC-
Confidence 99999999987 888888897 578899999999999999999999999999999 44333 44
Q ss_pred CcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEEecCHhh
Q 011751 339 GFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENE 388 (478)
Q Consensus 339 g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 388 (478)
++ .|.|...|.||+|||||.| +|.+..+++.++
T Consensus 679 -------te----------rhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD 712 (1025)
T PRK12900 679 -------SE----------RHESRRIDRQLRGRAGRQGDPGESVFYVSLED 712 (1025)
T ss_pred -------CC----------CCchHHHHHHHhhhhhcCCCCcceEEEechhH
Confidence 22 4788889999999999999 999999987654
No 127
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.46 E-value=1.5e-11 Score=129.76 Aligned_cols=96 Identities=16% Similarity=0.149 Sum_probs=73.0
Q ss_pred EEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcC--------------------------C
Q 011751 257 ILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPA--------------------------A 310 (478)
Q Consensus 257 ~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f--------------------------~ 310 (478)
.||=+++.+.+-.+++.|.+.... ....+.+..|||..+...|..+++.. .
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~---~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~ 835 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAE---EKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPA 835 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccc---cCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccc
Confidence 466678888888888888776332 22357788899999877777665331 1
Q ss_pred CCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC
Q 011751 311 AGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG 376 (478)
Q Consensus 311 ~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~ 376 (478)
.+...|+|||.+.|.|+|+ |.+.+|- .+.+..+.+||+||.-|.+
T Consensus 836 ~~~~~i~v~Tqv~E~g~D~-dfd~~~~--------------------~~~~~~sliQ~aGR~~R~~ 880 (1110)
T TIGR02562 836 LNHLFIVLATPVEEVGRDH-DYDWAIA--------------------DPSSMRSIIQLAGRVNRHR 880 (1110)
T ss_pred cCCCeEEEEeeeEEEEecc-cCCeeee--------------------ccCcHHHHHHHhhcccccc
Confidence 2467899999999999999 5556552 4788999999999999988
No 128
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.44 E-value=1.3e-13 Score=105.10 Aligned_cols=72 Identities=36% Similarity=0.606 Sum_probs=67.2
Q ss_pred CeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHH
Q 011751 287 KLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQAL 366 (478)
Q Consensus 287 ~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~ 366 (478)
++.+..+||+++.++|..+++.|.++..+|+++|++++.|+|+|+++.||. ++ .|.+..+|.
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~--------~~----------~~~~~~~~~ 72 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVII--------YD----------LPWSPASYI 72 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEE--------eC----------CCCCHHHHH
Confidence 778999999999999999999999999999999999999999999999998 44 378899999
Q ss_pred HhhcccCCCC
Q 011751 367 QRSGRAGREG 376 (478)
Q Consensus 367 Qr~GRaGR~~ 376 (478)
|++||++|.|
T Consensus 73 Q~~gR~~R~g 82 (82)
T smart00490 73 QRIGRAGRAG 82 (82)
T ss_pred HhhcccccCC
Confidence 9999999975
No 129
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.42 E-value=3e-11 Score=123.46 Aligned_cols=114 Identities=20% Similarity=0.198 Sum_probs=76.8
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCC
Q 011751 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPG 331 (478)
Q Consensus 252 ~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~ 331 (478)
..+.||||.+.|.+..+.++..|.+. ++....+++.-...|-..|-++=+ .-.|.|||++|.||.||.=
T Consensus 425 ~~GrPVLVgt~sI~~SE~ls~~L~~~---------gI~h~vLNAk~~~~EA~IIa~AG~--~gaVTIATNMAGRGTDIkL 493 (764)
T PRK12326 425 ETGQPVLVGTHDVAESEELAERLRAA---------GVPAVVLNAKNDAEEARIIAEAGK--YGAVTVSTQMAGRGTDIRL 493 (764)
T ss_pred HcCCCEEEEeCCHHHHHHHHHHHHhC---------CCcceeeccCchHhHHHHHHhcCC--CCcEEEEecCCCCccCeec
Confidence 35889999999999999999999886 666666776533333222333322 2369999999999999841
Q ss_pred eE-------EEEeCCcccceeecCCCCcccc-eeeecCHHHHHHhhcccCCCC-CCeEEEecCHh
Q 011751 332 IK-------YVIDPGFVKARLYDPVKGMESL-LVVPISKAQALQRSGRAGREG-PGKCFRLYPEN 387 (478)
Q Consensus 332 v~-------~VI~~g~~~~~~yd~~~~~~~~-~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~ 387 (478)
-. -|... .|+... ...+.|..-=.|-.|||||.| +|.+-.+++-+
T Consensus 494 g~~~~~~~~~V~~~-----------GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSle 547 (764)
T PRK12326 494 GGSDEADRDRVAEL-----------GGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLE 547 (764)
T ss_pred CCCcccchHHHHHc-----------CCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcc
Confidence 10 11110 111111 124677778899999999999 89877766533
No 130
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.41 E-value=1.2e-10 Score=125.25 Aligned_cols=178 Identities=13% Similarity=0.180 Sum_probs=103.7
Q ss_pred ceEEEEcCCCC---hhHHHhhhCCCC--eEEeCCccccceEEecC--CC------CcchHHHHHHHHHHhhhcCCCCCEE
Q 011751 192 LKLIIMSASLD---ARGFSEYFGCAK--AVHVQGRQFPVEILYTL--YP------EPDYLDATLITIFQVHLDEAPGDIL 258 (478)
Q Consensus 192 ~~~i~lSAT~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~L 258 (478)
..+|++|||+. ...+.+.+|-.. ...++.....-...+.. .| ..+|.+.....+..+. ..+|++|
T Consensus 574 ~~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~~~~~~~~~~~~~i~~~~--~~~g~~L 651 (820)
T PRK07246 574 CKTYFVSATLQISPRVSLADLLGFEEYLFHKIEKDKKQDQLVVVDQDMPLVTETSDEVYAEEIAKRLEELK--QLQQPIL 651 (820)
T ss_pred CeEEEEecccccCCCCcHHHHcCCCccceecCCCChHHccEEEeCCCCCCCCCCChHHHHHHHHHHHHHHH--hcCCCEE
Confidence 57899999993 223566666321 11111000001111111 11 2345555555555544 3478999
Q ss_pred EEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccC-CCCHHHHHhhcCcCCCCccEEEEeccccccccccC--CeEEE
Q 011751 259 VFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFS-SLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIP--GIKYV 335 (478)
Q Consensus 259 VF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~-~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip--~v~~V 335 (478)
|+++|.+..+.++..|... ...+.. .| +.+ +..+.+.|+++.-.||++|+.+-.|||+| +...|
T Consensus 652 VLFtS~~~l~~v~~~l~~~---------~~~~l~-Qg~~~~---~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~v 718 (820)
T PRK07246 652 VLFNSKKHLLAVSDLLDQW---------QVSHLA-QEKNGT---AYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIE 718 (820)
T ss_pred EEECcHHHHHHHHHHHhhc---------CCcEEE-eCCCcc---HHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEE
Confidence 9999999999999888643 223322 23 222 45577888888889999999999999997 34444
Q ss_pred EeCCcccceeecC----------CCCcccc--eeeecCHHHHHHhhcccCCCC--CCeEEEec
Q 011751 336 IDPGFVKARLYDP----------VKGMESL--LVVPISKAQALQRSGRAGREG--PGKCFRLY 384 (478)
Q Consensus 336 I~~g~~~~~~yd~----------~~~~~~~--~~~~~s~~~~~Qr~GRaGR~~--~G~~~~l~ 384 (478)
|-.+++=..-.|| ..|-..+ ...|.....+.|-+||.=|.. .|.++.+=
T Consensus 719 iI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD 781 (820)
T PRK07246 719 VITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILD 781 (820)
T ss_pred EEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEEC
Confidence 4445432111111 0111111 223555678999999999988 67655443
No 131
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.37 E-value=4.2e-11 Score=125.31 Aligned_cols=165 Identities=21% Similarity=0.261 Sum_probs=99.5
Q ss_pred eEEEEcCCC--ChhHHHhhhCCCCeEEeCCccccce------EEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCH
Q 011751 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVE------ILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQ 264 (478)
Q Consensus 193 ~~i~lSAT~--~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~ 264 (478)
++-+||.|. ..++|.+.++ .+++.+|... |+. ..|. .......+.+..+..++. .+.||||-+.|.
T Consensus 386 kLsGMTGTa~te~~Ef~~iY~-l~Vv~IPTnk-P~~R~D~~d~vy~--t~~eK~~Ai~~ei~~~~~--~GrPVLVGT~SV 459 (913)
T PRK13103 386 KLSGMTGTADTEAFEFRQIYG-LDVVVIPPNK-PLARKDFNDLVYL--TAEEKYAAIITDIKECMA--LGRPVLVGTATI 459 (913)
T ss_pred hhccCCCCCHHHHHHHHHHhC-CCEEECCCCC-CcccccCCCeEEc--CHHHHHHHHHHHHHHHHh--CCCCEEEEeCCH
Confidence 578899998 3445666664 3455555422 211 1111 112233445555555543 488999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccC---CeE--------
Q 011751 265 EEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIP---GIK-------- 333 (478)
Q Consensus 265 ~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip---~v~-------- 333 (478)
+..+.+++.|.+. ++..-.+++.-...|-..|-++=+ .-.|.||||+|.||.||. +..
T Consensus 460 e~SE~ls~~L~~~---------gi~h~VLNAk~~~~EA~IIa~AG~--~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~ 528 (913)
T PRK13103 460 ETSEHMSNLLKKE---------GIEHKVLNAKYHEKEAEIIAQAGR--PGALTIATNMAGRGTDILLGGNWEVEVAALEN 528 (913)
T ss_pred HHHHHHHHHHHHc---------CCcHHHhccccchhHHHHHHcCCC--CCcEEEeccCCCCCCCEecCCchHHHHHhhhh
Confidence 9999999999886 555444444433333333333322 347999999999999983 000
Q ss_pred ------------------EEEeCCcccceeecCCCCcccc-eeeecCHHHHHHhhcccCCCC-CCeEEEecC
Q 011751 334 ------------------YVIDPGFVKARLYDPVKGMESL-LVVPISKAQALQRSGRAGREG-PGKCFRLYP 385 (478)
Q Consensus 334 ------------------~VI~~g~~~~~~yd~~~~~~~~-~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~ 385 (478)
-|.. ..|+... ...+.|..-=.|-.|||||.| +|.+-.+++
T Consensus 529 ~~~~~~~~~~~~~~~~~e~V~e-----------~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lS 589 (913)
T PRK13103 529 PTPEQIAQIKADWQKRHQQVIE-----------AGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLS 589 (913)
T ss_pred hhHHHHHHHHHHHHhHHHHHHH-----------cCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEE
Confidence 0111 0111111 224677777899999999999 898766664
No 132
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.36 E-value=2.4e-12 Score=123.34 Aligned_cols=116 Identities=16% Similarity=0.224 Sum_probs=83.8
Q ss_pred HHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCC-CCccEEEEe
Q 011751 241 TLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAA-AGFRKVILA 319 (478)
Q Consensus 241 ~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~-~g~~~vlva 319 (478)
....+.+.|.. .+.++|||..+.-...+.+-.|. --.++|..++.||.+|++.|+ +..++.|+-
T Consensus 531 aCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl~--------------KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFl 595 (776)
T KOG1123|consen 531 ACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKLG--------------KPFIYGPTSQNERMKILQNFQTNPKVNTIFL 595 (776)
T ss_pred HHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHcC--------------CceEECCCchhHHHHHHHhcccCCccceEEE
Confidence 34445555554 47789999877654444444332 224589999999999999998 456789999
Q ss_pred ccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-------CCeEEEecCHhh
Q 011751 320 TNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-------PGKCFRLYPENE 388 (478)
Q Consensus 320 T~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-------~G~~~~l~~~~~ 388 (478)
+-+...++|+|..+|.|+ ... ---|..+=.||.||.-|.. +...|.|++++.
T Consensus 596 SKVgDtSiDLPEAnvLIQ--------ISS---------H~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DT 654 (776)
T KOG1123|consen 596 SKVGDTSIDLPEANVLIQ--------ISS---------HGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDT 654 (776)
T ss_pred eeccCccccCCcccEEEE--------Ecc---------cccchHHHHHHHHHHHHHhhcCccccceeeeeeeecch
Confidence 999999999999999997 111 2346677889999988865 344667765543
No 133
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.35 E-value=1.7e-11 Score=110.05 Aligned_cols=74 Identities=24% Similarity=0.185 Sum_probs=62.1
Q ss_pred hcCCcHHHHHHHHHHHhcC-CEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhC
Q 011751 11 KSLPIASVEKRLVEEVRKN-DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (478)
Q Consensus 11 ~~~~~~~~q~~~~~~l~~~-~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (478)
...+++++|.+++..+... +++++.+|||+|||+.+..++.+.........++++.|+..++.+..+++.....
T Consensus 5 ~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 79 (201)
T smart00487 5 GFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGP 79 (201)
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhc
Confidence 4567899999999999998 9999999999999987777777665544356799999999999998888876654
No 134
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.32 E-value=5e-14 Score=142.82 Aligned_cols=414 Identities=9% Similarity=-0.169 Sum_probs=275.3
Q ss_pred hhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCC---cEEEEecchHHHHHHHHHHHHHHhCC
Q 011751 9 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDG---KLIGVTQPRRVAAVTVAKRVAEESGV 85 (478)
Q Consensus 9 ~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~---~~i~~~~p~~~l~~~~~~~~~~~~~~ 85 (478)
.+.-.|.+++-+.+++++.++.+.++.+.+||||+++.++.+++......+ ..++..+|++..+........-+++.
T Consensus 401 etgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctv 480 (1282)
T KOG0921|consen 401 ETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTV 480 (1282)
T ss_pred cccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccccccccccccceeeecc
Confidence 345568889999999999999999999999999999999999876543322 23566677777665554443333333
Q ss_pred cCCCEEEEEEeecccCCh---------hhhHHHHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccCCC
Q 011751 86 ELGQRVGYSIRFDDRTST---------STRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHS 156 (478)
Q Consensus 86 ~~~~~vg~~~~~~~~~~~---------~~~~~~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~~~ 156 (478)
.++...++.......... .+.+...+. ..+......+.||.|+++.+||+++.+++.
T Consensus 481 gvllr~~e~glrg~sh~i~deiherdv~~dfll~~l-r~m~~ty~dl~v~lmsatIdTd~f~~~f~~------------- 546 (1282)
T KOG0921|consen 481 GVLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVL-REMISTYRDLRVVLMSATIDTDLFTNFFSS------------- 546 (1282)
T ss_pred chhhhhhhhcccccccccchhhhhhccchHHHHHHH-Hhhhccchhhhhhhhhcccchhhhhhhhcc-------------
Confidence 333332222222111111 011111111 123346677889999999999999988863
Q ss_pred CCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChhHHHhhhCCCCeEEeCCccccceEE--------
Q 011751 157 NGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEIL-------- 228 (478)
Q Consensus 157 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 228 (478)
-++++++++|.++..|..++-..+...+++...+.+..
T Consensus 547 ----------------------------------~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~ 592 (1282)
T KOG0921|consen 547 ----------------------------------IPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDE 592 (1282)
T ss_pred ----------------------------------ccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCc
Confidence 34678999999988876554444444443333222100
Q ss_pred ----------------ec------------CCCCcchHHHHHHHHHH------hhhcCCCCCEEEEcCCHHHHHHHHHHH
Q 011751 229 ----------------YT------------LYPEPDYLDATLITIFQ------VHLDEAPGDILVFLTGQEEIESVERLV 274 (478)
Q Consensus 229 ----------------~~------------~~~~~~~~~~~~~~~~~------~~~~~~~~~~LVF~~s~~~~~~l~~~l 274 (478)
+. ........++.+..+.. +..-.++...|+|++.+.-.......+
T Consensus 593 ~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~ 672 (1282)
T KOG0921|consen 593 EVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQA 672 (1282)
T ss_pred hhhhcccccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccc
Confidence 00 00123333333332221 223356888999999988777666655
Q ss_pred HHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCccc
Q 011751 275 QERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMES 354 (478)
Q Consensus 275 ~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~ 354 (478)
.+.- -+. +....+...|......+.+.+.+....+.+.+.-.|...+..|...++-+|++++..+...+-....++.
T Consensus 673 ~~y~-ilp--~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sk 749 (1282)
T KOG0921|consen 673 NKYE-ILP--LHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASK 749 (1282)
T ss_pred hhcc-ccc--chhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccc
Confidence 5431 011 1133556678888888888899999999999999999998999888999999999988888777777776
Q ss_pred ceeeecCHHHHHHhhcccCCCCCCeEEEecCHhhHhcccCCCCCcccccCchHHHHHHHHcCCCCCCCc--cCCCCCCHH
Q 011751 355 LLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKLEDSTKPEIKRCNLSNVILQLKALGVDDIIGF--DFMEKPSRA 432 (478)
Q Consensus 355 ~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~pei~~~~l~~~~l~~~~~~~~~~~~~--~~~~~p~~~ 432 (478)
....|.+...-.||.||++|...+.||.++.......|.....+|+........++.++.+-...+..+ +-+.+|+..
T Consensus 750 tn~eqr~gr~grvR~G~~f~lcs~arF~~l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~ 829 (1282)
T KOG0921|consen 750 TNLEQRKGRAGRVRPGFCFHLCSRARFEALEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAV 829 (1282)
T ss_pred cchHhhcccCceecccccccccHHHHHHHHHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHH
Confidence 677788888899999999999999999999999999999999999988776666666655544444433 334555544
Q ss_pred HHHHHHHHHHHCCCCCCCC--CCCHHHHHHhccCCCCHhhhchhee
Q 011751 433 SIIKSLEQLFLLGALTDDC--KLSDPVGHQMARLPLDPIYSKALIV 476 (478)
Q Consensus 433 ~l~~al~~L~~~g~l~~~~--~~t~~lG~~~~~~~~~p~~~~~l~~ 476 (478)
..+ ...|-..+-+...+ ..+ ++++.....++.|..|++.+.
T Consensus 830 l~~--m~~ld~n~elt~lg~~la~-l~iep~~~k~~~lg~~~g~~~ 872 (1282)
T KOG0921|consen 830 LRE--MGALDANDELTPLGRMLAR-LPIEPRIGKMMILGTALGAGS 872 (1282)
T ss_pred HHH--hhhhhccCcccchhhhhhh-ccCcccccceeeechhhccch
Confidence 443 33344444444444 456 488999999999988887654
No 135
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.29 E-value=2.9e-12 Score=104.87 Aligned_cols=112 Identities=23% Similarity=0.242 Sum_probs=73.3
Q ss_pred hcCCEEEEEcCCCCcHHh-HHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeec------c
Q 011751 27 RKNDILIIVGETGSGKTT-QLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFD------D 99 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~-~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~------~ 99 (478)
.+|+..+|...+|||||. ++|.++.++... +.+++++.|+|.++.++.+.+.... +.+..... +
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~--~~rvLvL~PTRvva~em~~aL~~~~-------~~~~t~~~~~~~~g~ 72 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVREAIKR--RLRVLVLAPTRVVAEEMYEALKGLP-------VRFHTNARMRTHFGS 72 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHHHHHHT--T--EEEEESSHHHHHHHHHHTTTSS-------EEEESTTSS----SS
T ss_pred CCCceeEEecCCCCCCcccccHHHHHHHHHc--cCeEEEecccHHHHHHHHHHHhcCC-------cccCceeeeccccCC
Confidence 467888999999999996 688877766433 6689999999999999988764221 11111111 0
Q ss_pred c----CChhhhHHHHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHh
Q 011751 100 R----TSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNA 147 (478)
Q Consensus 100 ~----~~~~~~~~~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~ 147 (478)
. ....+....++......+++++|+||||..+..+-...+.++.....
T Consensus 73 ~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~ 124 (148)
T PF07652_consen 73 SIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAES 124 (148)
T ss_dssp SSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHT
T ss_pred CcccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhhc
Confidence 0 01223333455556688999999999999999999999988887553
No 136
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.27 E-value=1.3e-10 Score=121.09 Aligned_cols=92 Identities=10% Similarity=0.038 Sum_probs=65.2
Q ss_pred EEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCChhhhHHHHhh
Q 011751 33 IIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIKEALL 112 (478)
Q Consensus 33 ~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~l~ 112 (478)
+..+.+|||||.++..++..... .|+.++++.|...+..|..+++.+.++. ..+. .+++..+...+...|+.
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~--~Gk~vLvLvPEi~lt~q~~~rl~~~f~~---~~v~---~lhS~l~~~~R~~~w~~ 235 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLR--AGRGALVVVPDQRDVDRLEAALRALLGA---GDVA---VLSAGLGPADRYRRWLA 235 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHH--cCCeEEEEecchhhHHHHHHHHHHHcCC---CcEE---EECCCCCHHHHHHHHHH
Confidence 33444699999777777755543 2667999999999999999999888862 1122 24566677777765542
Q ss_pred C----------------cCcCCCcceEeecccccch
Q 011751 113 D----------------PYLSRYSAIIVDEAHERTV 132 (478)
Q Consensus 113 ~----------------~~l~~~~~lIiDE~H~r~~ 132 (478)
- .-+.++++||+||=|+.++
T Consensus 236 ~~~G~~~IViGtRSAvFaP~~~LgLIIvdEEhd~sy 271 (665)
T PRK14873 236 VLRGQARVVVGTRSAVFAPVEDLGLVAIWDDGDDLL 271 (665)
T ss_pred HhCCCCcEEEEcceeEEeccCCCCEEEEEcCCchhh
Confidence 1 1278999999999996433
No 137
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.26 E-value=4.5e-10 Score=116.60 Aligned_cols=159 Identities=21% Similarity=0.241 Sum_probs=99.6
Q ss_pred eEEEEcCCC--ChhHHHhhhCCCCeEEeCCccccceEEecCC----CCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHH
Q 011751 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILYTLY----PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE 266 (478)
Q Consensus 193 ~~i~lSAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~ 266 (478)
++-+||.|. ..++|.+.++ ..++.+|... |+.-...++ .......+.+..+...+ ..+.|+||.|.|.+.
T Consensus 363 kLsGMTGTA~te~~Ef~~iY~-l~Vv~IPTnk-P~~R~D~~d~iy~t~~~K~~Aii~ei~~~~--~~gqPVLVgT~SIe~ 438 (925)
T PRK12903 363 KLSGMTGTAKTEEQEFIDIYN-MRVNVVPTNK-PVIRKDEPDSIFGTKHAKWKAVVKEVKRVH--KKGQPILIGTAQVED 438 (925)
T ss_pred hhhccCCCCHHHHHHHHHHhC-CCEEECCCCC-CeeeeeCCCcEEEcHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHH
Confidence 578899998 3345555554 3455555422 222111111 11223344455555554 348899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCC-ccEEEEeccccccccccCCeE--------EEEe
Q 011751 267 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG-FRKVILATNIAETSVTIPGIK--------YVID 337 (478)
Q Consensus 267 ~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g-~~~vlvaT~~~~~Gvdip~v~--------~VI~ 337 (478)
.+.++..|.+. ++....+++.-...|-..|- ..| .-.|.|||++|.||.||.--. +||-
T Consensus 439 SE~ls~~L~~~---------gi~h~vLNAk~~e~EA~IIa---~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIg 506 (925)
T PRK12903 439 SETLHELLLEA---------NIPHTVLNAKQNAREAEIIA---KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLG 506 (925)
T ss_pred HHHHHHHHHHC---------CCCceeecccchhhHHHHHH---hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEe
Confidence 99999999886 66655566542222322232 334 347999999999999995222 5553
Q ss_pred CCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEEecC
Q 011751 338 PGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYP 385 (478)
Q Consensus 338 ~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~ 385 (478)
+. .+.|..-=.|..|||||.| +|.+-.+.+
T Consensus 507 Te------------------rheSrRIDnQLrGRaGRQGDpGss~f~lS 537 (925)
T PRK12903 507 TD------------------KAESRRIDNQLRGRSGRQGDVGESRFFIS 537 (925)
T ss_pred cc------------------cCchHHHHHHHhcccccCCCCCcceEEEe
Confidence 22 3556666679999999999 897655554
No 138
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.23 E-value=1.9e-09 Score=118.05 Aligned_cols=183 Identities=19% Similarity=0.255 Sum_probs=109.1
Q ss_pred ceEEEEcCCCCh----hHHHhhhCCCC----eEEeCCccccc----eEEecC-CC------CcchHHHHHHHHHHhhhcC
Q 011751 192 LKLIIMSASLDA----RGFSEYFGCAK----AVHVQGRQFPV----EILYTL-YP------EPDYLDATLITIFQVHLDE 252 (478)
Q Consensus 192 ~~~i~lSAT~~~----~~~~~~~~~~~----~~~~~~~~~~~----~~~~~~-~~------~~~~~~~~~~~~~~~~~~~ 252 (478)
..+|++|||+.+ +-+.+.+|-.. ...++.+ ++. .++... .+ ...|.......+..+...
T Consensus 673 ~~~iltSATL~~~~~f~~~~~~lGl~~~~~~~~~~~Sp-F~~~~q~~l~vp~d~p~~~~~~~~~~~~~la~~i~~l~~~- 750 (928)
T PRK08074 673 KSVILTSATLTVNGSFDYIIERLGLEDFYPRTLQIPSP-FSYEEQAKLMIPTDMPPIKDVPIEEYIEEVAAYIAKIAKA- 750 (928)
T ss_pred CcEEEEeeecccCCCcHHHHHhcCCCCCCccEEEeCCC-CCHHHhcEEEeecCCCCCCCCChHHHHHHHHHHHHHHHHh-
Confidence 468999999933 23345566321 2333332 221 111111 11 134555555566655433
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCC-
Q 011751 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPG- 331 (478)
Q Consensus 253 ~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~- 331 (478)
.+|++|||.+|.+..+.+++.|..... ..++.+.. . +++...|..+.+.|+++.-.||++|..+..|||+|+
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~-----~~~~~ll~-Q-g~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~ 823 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEE-----LEGYVLLA-Q-GVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGD 823 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhccc-----ccCceEEe-c-CCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCC
Confidence 478999999999999999999976421 01223332 2 333345778888898888899999999999999995
Q ss_pred -eEEEEeCCcccceeecC----------CCCcccc--eeeecCHHHHHHhhcccCCCC--CCeEEEe
Q 011751 332 -IKYVIDPGFVKARLYDP----------VKGMESL--LVVPISKAQALQRSGRAGREG--PGKCFRL 383 (478)
Q Consensus 332 -v~~VI~~g~~~~~~yd~----------~~~~~~~--~~~~~s~~~~~Qr~GRaGR~~--~G~~~~l 383 (478)
.++||-.+++=.+-=|| ..|-..+ ...|.....+.|-+||.=|.. .|.++.+
T Consensus 824 ~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~il 890 (928)
T PRK08074 824 ELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVL 890 (928)
T ss_pred ceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEe
Confidence 47776655432100000 0111111 123556778899999999988 5665544
No 139
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.21 E-value=7.7e-11 Score=104.64 Aligned_cols=65 Identities=11% Similarity=0.139 Sum_probs=51.5
Q ss_pred CCcHHHHHHHHHHHhc-------CCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHH
Q 011751 13 LPIASVEKRLVEEVRK-------NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (478)
Q Consensus 13 ~~~~~~q~~~~~~l~~-------~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~ 82 (478)
+.++++|++++..+.. ++.+++.+|||||||.++..++..... .++++.|+..++.|..+.+...
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-----~~l~~~p~~~l~~Q~~~~~~~~ 73 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-----KVLIVAPNISLLEQWYDEFDDF 73 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-----EEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-----ceeEecCHHHHHHHHHHHHHHh
Confidence 5678999999999884 689999999999999776655554432 7888899999999999888433
No 140
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.20 E-value=2.1e-10 Score=96.68 Aligned_cols=55 Identities=29% Similarity=0.253 Sum_probs=44.8
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhC
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (478)
+++++.+|||+|||+++..++...........++++.|++.++.+..+.+.....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~ 55 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFG 55 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhh
Confidence 4689999999999988877777665444466899999999999999888776654
No 141
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.09 E-value=3.1e-09 Score=111.10 Aligned_cols=67 Identities=21% Similarity=0.179 Sum_probs=49.5
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCC-C-HHHHHhhcCcCCCCccEEEEecccccccccc
Q 011751 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSL-P-SEQQMRVFAPAAAGFRKVILATNIAETSVTI 329 (478)
Q Consensus 252 ~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l-~-~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdi 329 (478)
..+.||||-+.|.+..+.++..|.+. ++....+++.- . ..|-..|-++=+ .-.|.|||++|.||.||
T Consensus 422 ~~grPVLIgT~SIe~SE~ls~~L~~~---------gi~h~vLNAk~~~~~~EA~IIA~AG~--~G~VTIATNMAGRGTDI 490 (870)
T CHL00122 422 QTGRPILIGTTTIEKSELLSQLLKEY---------RLPHQLLNAKPENVRRESEIVAQAGR--KGSITIATNMAGRGTDI 490 (870)
T ss_pred hcCCCEEEeeCCHHHHHHHHHHHHHc---------CCccceeeCCCccchhHHHHHHhcCC--CCcEEEeccccCCCcCe
Confidence 45889999999999999999999886 66666667642 1 233333333322 24799999999999997
No 142
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.02 E-value=1.5e-08 Score=106.03 Aligned_cols=123 Identities=19% Similarity=0.118 Sum_probs=74.7
Q ss_pred eEEEEcCCC--ChhHHHhhhCCCCeEEeCCccccceEEecCC----CCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHH
Q 011751 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILYTLY----PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE 266 (478)
Q Consensus 193 ~~i~lSAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~ 266 (478)
++-+||.|. ..++|.+.++ .+++.+|... |+.....++ .......+.+..+...+ ..+.||||-+.|.+.
T Consensus 376 kLsGMTGTa~te~~Ef~~iY~-l~Vv~IPTnk-P~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~--~~GrPVLIgT~SVe~ 451 (939)
T PRK12902 376 KLAGMTGTAKTEEVEFEKTYK-LEVTVIPTNR-PRRRQDWPDQVYKTEIAKWRAVANETAEMH--KQGRPVLVGTTSVEK 451 (939)
T ss_pred hhcccCCCCHHHHHHHHHHhC-CcEEEcCCCC-CeeeecCCCeEEcCHHHHHHHHHHHHHHHH--hCCCCEEEeeCCHHH
Confidence 678899999 3445666664 3455555322 221111111 11223334444555544 348899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEccCC-CC-HHHHHhhcCcCCCCccEEEEeccccccccccC
Q 011751 267 IESVERLVQERLLQLPEASRKLVTVPIFSS-LP-SEQQMRVFAPAAAGFRKVILATNIAETSVTIP 330 (478)
Q Consensus 267 ~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~-l~-~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip 330 (478)
.+.++..|.+. ++....+++. .. ..|-..|-++=+ .-.|.||||+|.||.||.
T Consensus 452 SE~ls~~L~~~---------gi~h~vLNAk~~~~~~EA~IIa~AG~--~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 452 SELLSALLQEQ---------GIPHNLLNAKPENVEREAEIVAQAGR--KGAVTIATNMAGRGTDII 506 (939)
T ss_pred HHHHHHHHHHc---------CCchheeeCCCcchHhHHHHHHhcCC--CCcEEEeccCCCCCcCEe
Confidence 99999999986 6666666664 22 222222333322 236999999999999973
No 143
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.02 E-value=3.3e-08 Score=102.35 Aligned_cols=293 Identities=18% Similarity=0.164 Sum_probs=156.0
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCC----
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTS---- 102 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~---- 102 (478)
......+|.+|-|||||+.+..++....- .+...++++.-++.++.+...++...-- ...+.|....+....
T Consensus 47 ~~~~V~vVRSpMGTGKTtaLi~wLk~~l~-~~~~~VLvVShRrSL~~sL~~rf~~~~l---~gFv~Y~d~~~~~i~~~~~ 122 (824)
T PF02399_consen 47 QKRGVLVVRSPMGTGKTTALIRWLKDALK-NPDKSVLVVSHRRSLTKSLAERFKKAGL---SGFVNYLDSDDYIIDGRPY 122 (824)
T ss_pred CCCCeEEEECCCCCCcHHHHHHHHHHhcc-CCCCeEEEEEhHHHHHHHHHHHHhhcCC---Ccceeeecccccccccccc
Confidence 35567899999999999988777766521 2356799999999999999998754311 122222211111110
Q ss_pred -----hhhhHHHHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccCCCCCCCCCCCchhhhccCCCCCC
Q 011751 103 -----TSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNG 177 (478)
Q Consensus 103 -----~~~~~~~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 177 (478)
.-..+.++ ....+.++++|||||+- +.++++.... | + .....
T Consensus 123 ~rLivqIdSL~R~-~~~~l~~yDvVIIDEv~----------svL~qL~S~T-------------------m-~--~~~~v 169 (824)
T PF02399_consen 123 DRLIVQIDSLHRL-DGSLLDRYDVVIIDEVM----------SVLNQLFSPT-------------------M-R--QREEV 169 (824)
T ss_pred CeEEEEehhhhhc-ccccccccCEEEEehHH----------HHHHHHhHHH-------------------H-h--hHHHH
Confidence 01111122 23457789999999984 2222211100 0 0 00000
Q ss_pred ccccccccCCCCCCceEEEEcCCCChh---HHHhhhCCCCeEEeCCcc----cc-ceEEecCC-----------------
Q 011751 178 INTLKQCQGRKFAPLKLIIMSASLDAR---GFSEYFGCAKAVHVQGRQ----FP-VEILYTLY----------------- 232 (478)
Q Consensus 178 ~~~~~~~~~~~~~~~~~i~lSAT~~~~---~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~----------------- 232 (478)
.+.+..+.+ ...++|+|-||++.. .++..-++.++..+.... +. -.-.+...
T Consensus 170 ~~~L~~lI~---~ak~VI~~DA~ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~ 246 (824)
T PF02399_consen 170 DNLLKELIR---NAKTVIVMDADLNDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENA 246 (824)
T ss_pred HHHHHHHHH---hCCeEEEecCCCCHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCccccc
Confidence 111111111 334789999999544 344443443322221110 00 00000000
Q ss_pred ---CC----c---------chHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCC
Q 011751 233 ---PE----P---------DYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSS 296 (478)
Q Consensus 233 ---~~----~---------~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~ 296 (478)
+. + .........+..-. ..+.+|-||+.|..-++.+++..+.. ...|..++|.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~L--~~gknIcvfsSt~~~~~~v~~~~~~~---------~~~Vl~l~s~ 315 (824)
T PF02399_consen 247 DTSPTPKHSPDPTATAAISNDETTFFSELLARL--NAGKNICVFSSTVSFAEIVARFCARF---------TKKVLVLNST 315 (824)
T ss_pred ccCCCcCCCCccccccccccchhhHHHHHHHHH--hCCCcEEEEeChHHHHHHHHHHHHhc---------CCeEEEEcCC
Confidence 00 0 00011111222211 23778889999999888888887765 5567777775
Q ss_pred CCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC
Q 011751 297 LPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG 376 (478)
Q Consensus 297 l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~ 376 (478)
-+.. .+.+ =++.+|++=|++...|+++.+..+=--+++ ..+.. .-.+..+..|+.||+=...
T Consensus 316 ~~~~---dv~~---W~~~~VviYT~~itvG~Sf~~~HF~~~f~y-----vk~~~-------~gpd~~s~~Q~lgRvR~l~ 377 (824)
T PF02399_consen 316 DKLE---DVES---WKKYDVVIYTPVITVGLSFEEKHFDSMFAY-----VKPMS-------YGPDMVSVYQMLGRVRSLL 377 (824)
T ss_pred CCcc---cccc---ccceeEEEEeceEEEEeccchhhceEEEEE-----ecCCC-------CCCcHHHHHHHHHHHHhhc
Confidence 5444 2222 256899999999999999864322100111 01111 1245566999999997777
Q ss_pred CCeEEEecCHhh
Q 011751 377 PGKCFRLYPENE 388 (478)
Q Consensus 377 ~G~~~~l~~~~~ 388 (478)
....|.-++...
T Consensus 378 ~~ei~v~~d~~~ 389 (824)
T PF02399_consen 378 DNEIYVYIDASG 389 (824)
T ss_pred cCeEEEEEeccc
Confidence 777777765443
No 144
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.98 E-value=5.2e-08 Score=99.08 Aligned_cols=112 Identities=17% Similarity=0.299 Sum_probs=88.8
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCcc--EEEEeccccccccccCC
Q 011751 254 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFR--KVILATNIAETSVTIPG 331 (478)
Q Consensus 254 ~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~--~vlvaT~~~~~Gvdip~ 331 (478)
+.++|+|..++....-+...|... .++...-+.|..+...|..+++.|.++.. -.|++|-+-..|+|+-+
T Consensus 546 g~rvllFsqs~~mLdilE~fL~~~--------~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTg 617 (923)
T KOG0387|consen 546 GDRVLLFSQSRQMLDILESFLRRA--------KGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTG 617 (923)
T ss_pred CCEEEEehhHHHHHHHHHHHHHhc--------CCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEeccccccccccc
Confidence 568999999999888888888741 28899999999999999999999997764 35899999999999987
Q ss_pred eEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCCCCeEEEecCHhh
Q 011751 332 IKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENE 388 (478)
Q Consensus 332 v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~ 388 (478)
.+-||- |||..+ |.+-.+..-|+-|-|-...=.+|+|++...
T Consensus 618 AnRVII--------fDPdWN-------PStD~QAreRawRiGQkkdV~VYRL~t~gT 659 (923)
T KOG0387|consen 618 ANRVII--------FDPDWN-------PSTDNQARERAWRIGQKKDVVVYRLMTAGT 659 (923)
T ss_pred CceEEE--------ECCCCC-------CccchHHHHHHHhhcCccceEEEEEecCCc
Confidence 777776 999876 445555666666666555566999986443
No 145
>COG4889 Predicted helicase [General function prediction only]
Probab=98.97 E-value=2.4e-09 Score=109.33 Aligned_cols=106 Identities=16% Similarity=0.252 Sum_probs=75.6
Q ss_pred CEEEEcCCHHHHHHHHHHHHHHHhc----CCC--CCCCeEEEEccCCCCHHHHHhhc---CcCCCCccEEEEeccccccc
Q 011751 256 DILVFLTGQEEIESVERLVQERLLQ----LPE--ASRKLVTVPIFSSLPSEQQMRVF---APAAAGFRKVILATNIAETS 326 (478)
Q Consensus 256 ~~LVF~~s~~~~~~l~~~l~~~~~~----~~~--~~~~~~v~~~h~~l~~~~r~~i~---~~f~~g~~~vlvaT~~~~~G 326 (478)
+.+-||.+.+.-..++..+...... +.. ....+.+-...|.|...+|...+ ..|.....+||=---.++.|
T Consensus 462 RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEG 541 (1518)
T COG4889 462 RAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEG 541 (1518)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcC
Confidence 4677888777666666555443221 111 12234555556889988886554 36678889999888899999
Q ss_pred cccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCCCCe
Q 011751 327 VTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGK 379 (478)
Q Consensus 327 vdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~ 379 (478)
||+|..+-||- |||+. |.-+.+|-+||+.|..+|+
T Consensus 542 VDVPaLDsViF--------f~pr~----------smVDIVQaVGRVMRKa~gK 576 (1518)
T COG4889 542 VDVPALDSVIF--------FDPRS----------SMVDIVQAVGRVMRKAKGK 576 (1518)
T ss_pred CCccccceEEE--------ecCch----------hHHHHHHHHHHHHHhCcCC
Confidence 99999999996 77643 4556999999999988665
No 146
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.97 E-value=6.2e-07 Score=92.84 Aligned_cols=135 Identities=19% Similarity=0.133 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCC----C
Q 011751 237 YLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAA----G 312 (478)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~----g 312 (478)
+.+.....+..+... .+|.+||.+.|+..++.++..|...+ .+.+. ..|..+ .+..+++.|++ |
T Consensus 454 ~~~~~~~~~~~~~~~-~~G~~lvLfTS~~~~~~~~~~l~~~l--------~~~~l-~qg~~~--~~~~l~~~f~~~~~~~ 521 (636)
T TIGR03117 454 WLENVSLSTAAILRK-AQGGTLVLTTAFSHISAIGQLVELGI--------PAEIV-IQSEKN--RLASAEQQFLALYANG 521 (636)
T ss_pred HHHHHHHHHHHHHHH-cCCCEEEEechHHHHHHHHHHHHhhc--------CCCEE-EeCCCc--cHHHHHHHHHHhhcCC
Confidence 444455555555443 47899999999999999999997653 23333 345442 23445566654 5
Q ss_pred ccEEEEecccccccccc----------CCeEEEEeCCcccceeecCC--------CCcccceeeecCHHHHHHhhcccCC
Q 011751 313 FRKVILATNIAETSVTI----------PGIKYVIDPGFVKARLYDPV--------KGMESLLVVPISKAQALQRSGRAGR 374 (478)
Q Consensus 313 ~~~vlvaT~~~~~Gvdi----------p~v~~VI~~g~~~~~~yd~~--------~~~~~~~~~~~s~~~~~Qr~GRaGR 374 (478)
.-.||++|+.+-.|||+ ..+++||-.-++=-. =||- .|-..+...|.....+.|-+||-=|
T Consensus 522 ~~~vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~-~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR 600 (636)
T TIGR03117 522 IQPVLIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGL-NRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVR 600 (636)
T ss_pred CCcEEEeCCccccccccCCccCCCCCCCcccEEEEEeCCCCc-CChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceee
Confidence 68999999999999999 246666542222000 1111 1212222345556678888888888
Q ss_pred CC----CCeEEEec
Q 011751 375 EG----PGKCFRLY 384 (478)
Q Consensus 375 ~~----~G~~~~l~ 384 (478)
.. .|....|=
T Consensus 601 ~~~D~~~G~i~ilD 614 (636)
T TIGR03117 601 HPDMPQNRRIHMLD 614 (636)
T ss_pred cCCCcCceEEEEEe
Confidence 75 35554443
No 147
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=98.92 E-value=1.4e-07 Score=95.70 Aligned_cols=115 Identities=22% Similarity=0.258 Sum_probs=86.8
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCC---ccEEEEeccccccccc
Q 011751 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG---FRKVILATNIAETSVT 328 (478)
Q Consensus 252 ~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g---~~~vlvaT~~~~~Gvd 328 (478)
+.+.+||||..=..-.+-+.+++.-+ ++...-+.|+++.++|...++.|-.. +.-.+++|-+...|||
T Consensus 485 ~~GhRVLIFSQmt~mLDILeDyc~~R---------~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGIN 555 (971)
T KOG0385|consen 485 EQGHRVLIFSQMTRMLDILEDYCMLR---------GYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGIN 555 (971)
T ss_pred hCCCeEEEeHHHHHHHHHHHHHHHhc---------CceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccc
Confidence 34788999966444444444444333 88889999999999999999988644 3456899999999999
Q ss_pred cCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCCCCeEEEecCHhhHh
Q 011751 329 IPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFD 390 (478)
Q Consensus 329 ip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~ 390 (478)
+-..++||- ||...+ |..--+..+|+-|.|-..+=.+|+|++.+..+
T Consensus 556 L~aADtVIl--------yDSDWN-------PQ~DLQAmDRaHRIGQ~K~V~V~RLitentVE 602 (971)
T KOG0385|consen 556 LTAADTVIL--------YDSDWN-------PQVDLQAMDRAHRIGQKKPVVVYRLITENTVE 602 (971)
T ss_pred cccccEEEE--------ecCCCC-------chhhhHHHHHHHhhCCcCceEEEEEeccchHH
Confidence 999999997 886654 55555667777777766688899999866544
No 148
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.81 E-value=7.4e-09 Score=108.00 Aligned_cols=206 Identities=16% Similarity=0.242 Sum_probs=136.0
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCCh------
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTST------ 103 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~------ 103 (478)
.++++-+|||+|||..+...+.......++.+++++.|..+++....+++.+..... |..+. ..++...+
T Consensus 944 ~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~-g~k~i---e~tgd~~pd~~~v~ 1019 (1230)
T KOG0952|consen 944 LNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELP-GIKVI---ELTGDVTPDVKAVR 1019 (1230)
T ss_pred hhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccC-CceeE---eccCccCCChhhee
Confidence 467888999999998888888777766677899999999999988877776555443 33322 11111111
Q ss_pred ------------hhhHHHHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccCCCCCCCCCCCchhhhcc
Q 011751 104 ------------STRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDR 171 (478)
Q Consensus 104 ------------~~~~~~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 171 (478)
....+.|-...++++++.+|+||.| ..+.++|+.++++..+
T Consensus 1020 ~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~h---------------------------llg~~rgPVle~ivsr 1072 (1230)
T KOG0952|consen 1020 EADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIH---------------------------LLGEDRGPVLEVIVSR 1072 (1230)
T ss_pred cCceEEcccccccCccccccchhhhccccceeecccc---------------------------cccCCCcceEEEEeec
Confidence 1122255556778899999999998 5566777777776665
Q ss_pred CCCCCCccccccccCCCCCCceEEEEcCCC-ChhHHHhhhCCCCeEEe--CCccccceEEecCCCCcchHHHHH---H-H
Q 011751 172 GNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHV--QGRQFPVEILYTLYPEPDYLDATL---I-T 244 (478)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~-~ 244 (478)
.+. ........++.+++|--+ |+.++++|++..+.... ..++.|.+.+....|...|...+. + .
T Consensus 1073 ~n~---------~s~~t~~~vr~~glsta~~na~dla~wl~~~~~~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa 1143 (1230)
T KOG0952|consen 1073 MNY---------ISSQTEEPVRYLGLSTALANANDLADWLNIKDMYNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPA 1143 (1230)
T ss_pred ccc---------CccccCcchhhhhHhhhhhccHHHHHHhCCCCcCCCCcccccCCceEeecCCCchhcchhhhhcccHH
Confidence 432 122233667888887444 99999999987766333 345566677777766644333221 1 2
Q ss_pred HHHhhhcCCCCCEEEEcCCHHHHHHHHHHHH
Q 011751 245 IFQVHLDEAPGDILVFLTGQEEIESVERLVQ 275 (478)
Q Consensus 245 ~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~ 275 (478)
...+....+..++|||+.+++...-.+.-|.
T Consensus 1144 ~qaik~~sp~~p~lifv~srrqtrlta~~li 1174 (1230)
T KOG0952|consen 1144 FQAIKTHSPIKPVLIFVSSRRQTRLTALDLI 1174 (1230)
T ss_pred HHHHhcCCCCCceEEEeecccccccchHhHH
Confidence 2233445678899999999876555444443
No 149
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.78 E-value=9.7e-07 Score=91.88 Aligned_cols=83 Identities=18% Similarity=0.213 Sum_probs=64.7
Q ss_pred CeEEEEccCCCCHHHHHhhcCcCCCC--ccE-EEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHH
Q 011751 287 KLVTVPIFSSLPSEQQMRVFAPAAAG--FRK-VILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKA 363 (478)
Q Consensus 287 ~~~v~~~h~~l~~~~r~~i~~~f~~g--~~~-vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~ 363 (478)
++.+..+||.|+..+|..+++.|-+. ..+ .+.+|-+.+.|+|+=+.+.||- ||+..+ ++
T Consensus 619 g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil--------~D~dWN----------Pa 680 (776)
T KOG0390|consen 619 GYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLIL--------FDPDWN----------PA 680 (776)
T ss_pred CceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEE--------eCCCCC----------ch
Confidence 88999999999999999999999643 324 4677888999999877777776 886543 45
Q ss_pred HHHHhhcccCCCC---CCeEEEecCHh
Q 011751 364 QALQRSGRAGREG---PGKCFRLYPEN 387 (478)
Q Consensus 364 ~~~Qr~GRaGR~~---~G~~~~l~~~~ 387 (478)
.=.|-++||=|.| +=..|+|++..
T Consensus 681 ~d~QAmaR~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 681 VDQQAMARAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred hHHHHHHHhccCCCcceEEEEEeecCC
Confidence 5678888888888 45577888544
No 150
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.62 E-value=3e-06 Score=82.14 Aligned_cols=77 Identities=22% Similarity=0.299 Sum_probs=65.6
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCC-ccEE-EEecccccccccc
Q 011751 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG-FRKV-ILATNIAETSVTI 329 (478)
Q Consensus 252 ~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g-~~~v-lvaT~~~~~Gvdi 329 (478)
.++.+.+||+.-..-.+.+...+.++ ++...-+.|..+..+|....+.|... +.+| +++-..+..|+|+
T Consensus 490 ~~~~KflVFaHH~~vLd~Iq~~~~~r---------~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~ 560 (689)
T KOG1000|consen 490 APPRKFLVFAHHQIVLDTIQVEVNKR---------KVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTL 560 (689)
T ss_pred CCCceEEEEehhHHHHHHHHHHHHHc---------CCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceee
Confidence 45778999999998888888888886 78888889999999999999999744 4555 7788899999999
Q ss_pred CCeEEEEe
Q 011751 330 PGIKYVID 337 (478)
Q Consensus 330 p~v~~VI~ 337 (478)
.+.+.||-
T Consensus 561 tAa~~VVF 568 (689)
T KOG1000|consen 561 TAASVVVF 568 (689)
T ss_pred eccceEEE
Confidence 99999983
No 151
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=98.61 E-value=2.1e-08 Score=78.08 Aligned_cols=42 Identities=50% Similarity=0.801 Sum_probs=39.0
Q ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHhccCCCCHhhhchheecC
Q 011751 436 KSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSKALIVAE 478 (478)
Q Consensus 436 ~al~~L~~~g~l~~~~~~t~~lG~~~~~~~~~p~~~~~l~~~~ 478 (478)
+|++.|..+||||.++++|+ +|+.|+.+|++|++||||+.|+
T Consensus 1 ~A~~~L~~LgAld~~~~lT~-lG~~m~~lPl~Prla~~Ll~a~ 42 (92)
T smart00847 1 AALELLYELGALDDDGRLTP-LGRKMAELPLDPRLAKMLLAAA 42 (92)
T ss_pred CHHHHHHHCCCcCCCCCcCH-HHHHHHHCCCChHHHHHHHHHH
Confidence 37899999999999999997 9999999999999999999764
No 152
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=98.58 E-value=2.7e-08 Score=78.80 Aligned_cols=41 Identities=44% Similarity=0.708 Sum_probs=34.3
Q ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHhccCCCCHhhhchheec
Q 011751 436 KSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSKALIVA 477 (478)
Q Consensus 436 ~al~~L~~~g~l~~~~~~t~~lG~~~~~~~~~p~~~~~l~~~ 477 (478)
+|++.|..+||||.++++|+ +|+.|+.+|++|++||||+.|
T Consensus 1 ~A~~~L~~Lgald~~~~lT~-lG~~~~~lPl~p~~a~~Ll~~ 41 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLTP-LGRKMSQLPLDPRLAKMLLYG 41 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B-H-HHHHHTTSSS-HHHHHHHHHH
T ss_pred CHHHHHHHCCCCCCCCCcCH-HHHHHHHCCCchHhHhHhhhc
Confidence 47899999999999999996 999999999999999999876
No 153
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.46 E-value=5.7e-06 Score=88.37 Aligned_cols=113 Identities=19% Similarity=0.199 Sum_probs=89.9
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCC---CccEEEEeccccccccc
Q 011751 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAA---GFRKVILATNIAETSVT 328 (478)
Q Consensus 252 ~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~---g~~~vlvaT~~~~~Gvd 328 (478)
..+.+||||..-..-.+-++++|..+ ++...-+.|++..+.|+..++-|-. .....|+||-+-..|||
T Consensus 697 ~~GHrVLIFSQMVRmLDIL~eYL~~r---------~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGIN 767 (1373)
T KOG0384|consen 697 EGGHRVLIFSQMVRMLDILAEYLSLR---------GYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGIN 767 (1373)
T ss_pred cCCceEEEhHHHHHHHHHHHHHHHHc---------CCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCccccc
Confidence 34678999988777777788888776 8889999999999999999998853 34678999999999999
Q ss_pred cCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC---CCeEEEecCHhhHhc
Q 011751 329 IPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPENEFDK 391 (478)
Q Consensus 329 ip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~~~ 391 (478)
+-..+.||- ||...+ +.+=+|-..||.|-| .=.+|+|++++.|+.
T Consensus 768 LatADTVII--------FDSDWN----------PQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEe 815 (1373)
T KOG0384|consen 768 LATADTVII--------FDSDWN----------PQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEE 815 (1373)
T ss_pred ccccceEEE--------eCCCCC----------cchHHHHHHHHHhhcccceEEEEEEecCCchHH
Confidence 988877776 875543 334567777777777 345999999887765
No 154
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.33 E-value=3.5e-06 Score=89.64 Aligned_cols=160 Identities=24% Similarity=0.242 Sum_probs=101.1
Q ss_pred eEEEEcCCC--ChhHHHhhhCCCCeEEeCCccccceEEecCC----CCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHH
Q 011751 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILYTLY----PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE 266 (478)
Q Consensus 193 ~~i~lSAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~ 266 (478)
++-+||.|. ...+|.+.++ -.++.+|... |+.-....+ .......+.+..+...+. .+.||||-+.|.+.
T Consensus 565 kLsGMTGTA~tea~Ef~~IY~-L~Vv~IPTnr-P~~R~D~~D~vy~t~~eK~~Aii~ei~~~~~--~GrPVLVGT~SVe~ 640 (1112)
T PRK12901 565 KLAGMTGTAETEAGEFWDIYK-LDVVVIPTNR-PIARKDKEDLVYKTKREKYNAVIEEITELSE--AGRPVLVGTTSVEI 640 (1112)
T ss_pred hhcccCCCCHHHHHHHHHHhC-CCEEECCCCC-CcceecCCCeEecCHHHHHHHHHHHHHHHHH--CCCCEEEEeCcHHH
Confidence 567889888 4445666554 3455555432 221111111 112234455556666554 48899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccC--------CeEEEEeC
Q 011751 267 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIP--------GIKYVIDP 338 (478)
Q Consensus 267 ~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip--------~v~~VI~~ 338 (478)
.+.+++.|.+. ++..-.+++..-..|-.-|-++=+. -.|.||||+|.||.||. +==+||-
T Consensus 641 SE~lS~~L~~~---------gI~H~VLNAK~h~~EAeIVA~AG~~--GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIg- 708 (1112)
T PRK12901 641 SELLSRMLKMR---------KIPHNVLNAKLHQKEAEIVAEAGQP--GTVTIATNMAGRGTDIKLSPEVKAAGGLAIIG- 708 (1112)
T ss_pred HHHHHHHHHHc---------CCcHHHhhccchhhHHHHHHhcCCC--CcEEEeccCcCCCcCcccchhhHHcCCCEEEE-
Confidence 99999999886 5554444444333333333333332 36899999999999986 1123332
Q ss_pred CcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEEecC
Q 011751 339 GFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYP 385 (478)
Q Consensus 339 g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~ 385 (478)
...+.|..--.|-.|||||.| +|.+-.+++
T Consensus 709 -----------------TerheSrRID~QLrGRaGRQGDPGsS~f~lS 739 (1112)
T PRK12901 709 -----------------TERHESRRVDRQLRGRAGRQGDPGSSQFYVS 739 (1112)
T ss_pred -----------------ccCCCcHHHHHHHhcccccCCCCCcceEEEE
Confidence 124677888899999999999 888665554
No 155
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.32 E-value=3e-05 Score=82.90 Aligned_cols=114 Identities=18% Similarity=0.274 Sum_probs=84.8
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCC-ccEE-EEeccccccccccCC
Q 011751 254 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG-FRKV-ILATNIAETSVTIPG 331 (478)
Q Consensus 254 ~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g-~~~v-lvaT~~~~~Gvdip~ 331 (478)
..++||||.=+...+-+.+-|-+. ..+.+.-.-+.|+.++.+|.++.+.|-++ .++| +++|.+-..|+|+-+
T Consensus 1340 qHRiLIFcQlK~mlDlVekDL~k~------~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTG 1413 (1549)
T KOG0392|consen 1340 QHRILIFCQLKSMLDLVEKDLFKK------YMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTG 1413 (1549)
T ss_pred cceeEEeeeHHHHHHHHHHHHhhh------hcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCC
Confidence 457999999988888887666443 12255556789999999999999999988 6777 578899999999999
Q ss_pred eEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC---CCeEEEecCHhhHhc
Q 011751 332 IKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPENEFDK 391 (478)
Q Consensus 332 v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~~~ 391 (478)
.+.||- ++..++ | ..=+|-.-||.|-| .=.+|+|+++...+.
T Consensus 1414 ADTVVF--------vEHDWN-------P---MrDLQAMDRAHRIGQKrvVNVyRlItrGTLEE 1458 (1549)
T KOG0392|consen 1414 ADTVVF--------VEHDWN-------P---MRDLQAMDRAHRIGQKRVVNVYRLITRGTLEE 1458 (1549)
T ss_pred CceEEE--------EecCCC-------c---hhhHHHHHHHHhhcCceeeeeeeehhcccHHH
Confidence 998884 333222 1 22367777777777 345899998776554
No 156
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.32 E-value=6.2e-06 Score=73.55 Aligned_cols=93 Identities=24% Similarity=0.280 Sum_probs=58.8
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCChhhhHHH
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIKE 109 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~ 109 (478)
+.++++||||+||||.+..++........+..++..-..|..+.++.+.+++..+.++ . .......+......
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~------~-~~~~~~~~~~~~~~ 74 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPF------Y-VARTESDPAEIARE 74 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEE------E-ESSTTSCHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhcccc------c-hhhcchhhHHHHHH
Confidence 4688999999999988877776655443344566677788888888888888877542 0 01111122233333
Q ss_pred HhhCcCcCCCcceEeecccc
Q 011751 110 ALLDPYLSRYSAIIVDEAHE 129 (478)
Q Consensus 110 ~l~~~~l~~~~~lIiDE~H~ 129 (478)
.+......++++|+||-+..
T Consensus 75 ~l~~~~~~~~D~vlIDT~Gr 94 (196)
T PF00448_consen 75 ALEKFRKKGYDLVLIDTAGR 94 (196)
T ss_dssp HHHHHHHTTSSEEEEEE-SS
T ss_pred HHHHHhhcCCCEEEEecCCc
Confidence 33333345689999999853
No 157
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.15 E-value=3.8e-06 Score=69.95 Aligned_cols=103 Identities=26% Similarity=0.358 Sum_probs=53.1
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHhhcCcc----CCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCC
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLFHAGFC----RDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTS 102 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~~~~~~----~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~ 102 (478)
.+++.++|.||+|+|||+++..++...... .+...+.+..|...........+....+..... ..+
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~----------~~~ 71 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS----------RQT 71 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS----------TS-
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc----------cCC
Confidence 356789999999999999998888654211 012334455554444566666677766654322 111
Q ss_pred hhhhH---HHHhhCcCcCCCcceEeecccccchhhhHHHHHHHHH
Q 011751 103 TSTRI---KEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKV 144 (478)
Q Consensus 103 ~~~~~---~~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~ 144 (478)
..... ...+.. ....++||||+|... ..-.+..++.+
T Consensus 72 ~~~l~~~~~~~l~~---~~~~~lviDe~~~l~--~~~~l~~l~~l 111 (131)
T PF13401_consen 72 SDELRSLLIDALDR---RRVVLLVIDEADHLF--SDEFLEFLRSL 111 (131)
T ss_dssp HHHHHHHHHHHHHH---CTEEEEEEETTHHHH--THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---cCCeEEEEeChHhcC--CHHHHHHHHHH
Confidence 22111 122221 112699999999642 24444444443
No 158
>PF13245 AAA_19: Part of AAA domain
Probab=98.12 E-value=9.4e-06 Score=60.16 Aligned_cols=55 Identities=27% Similarity=0.385 Sum_probs=41.0
Q ss_pred HHhcCCEEEEEcCCCCcHHhHHHHHHhhcCc--cCCCcEEEEecchHHHHHHHHHHH
Q 011751 25 EVRKNDILIIVGETGSGKTTQLPQFLFHAGF--CRDGKLIGVTQPRRVAAVTVAKRV 79 (478)
Q Consensus 25 ~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~--~~~~~~i~~~~p~~~l~~~~~~~~ 79 (478)
++..+..++|.||+|||||+.+...+..... ...+..++++.|++.++....+++
T Consensus 6 al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 6 ALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 4554667777999999999666555554431 122668999999999999988877
No 159
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.11 E-value=5.9e-05 Score=79.24 Aligned_cols=112 Identities=22% Similarity=0.264 Sum_probs=66.8
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccC-
Q 011751 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIP- 330 (478)
Q Consensus 252 ~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip- 330 (478)
..+.|+||-..+.+..+.+.+.|.+. ++....+.+.-...|-+.+..+-+ .--|-|||++|.+|-||-
T Consensus 427 ~~gqPvLvgT~sie~SE~ls~~L~~~---------~i~h~VLNAk~h~~EA~Iia~AG~--~gaVTiATNMAGRGTDIkL 495 (822)
T COG0653 427 EKGQPVLVGTVSIEKSELLSKLLRKA---------GIPHNVLNAKNHAREAEIIAQAGQ--PGAVTIATNMAGRGTDIKL 495 (822)
T ss_pred hcCCCEEEcCcceecchhHHHHHHhc---------CCCceeeccccHHHHHHHHhhcCC--CCccccccccccCCccccc
Confidence 44889999999999999999999876 443333333222333333333322 235789999999999984
Q ss_pred --CeEEEEeCCcccceeecCCCCcccceee-ecCHHHHHHhhcccCCCC-CCeEEEecC
Q 011751 331 --GIKYVIDPGFVKARLYDPVKGMESLLVV-PISKAQALQRSGRAGREG-PGKCFRLYP 385 (478)
Q Consensus 331 --~v~~VI~~g~~~~~~yd~~~~~~~~~~~-~~s~~~~~Qr~GRaGR~~-~G~~~~l~~ 385 (478)
+...|...| |...+.+. --|..-=.|-.||+||.| +|..-.+++
T Consensus 496 g~~~~~V~~lG-----------GL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lS 543 (822)
T COG0653 496 GGNPEFVMELG-----------GLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLS 543 (822)
T ss_pred CCCHHHHHHhC-----------CcEEEecccchhhHHHHHhhcccccCCCcchhhhhhh
Confidence 221122211 11111111 123333459999999999 887655554
No 160
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.10 E-value=0.00019 Score=73.88 Aligned_cols=114 Identities=16% Similarity=0.186 Sum_probs=84.4
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCc--cEEEEeccccccccccC
Q 011751 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGF--RKVILATNIAETSVTIP 330 (478)
Q Consensus 253 ~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~--~~vlvaT~~~~~Gvdip 330 (478)
.+.+||+|..=..-.+-+...|.-. ++...-+.|...-.+|..++..|-..+ .-.|++|-+-.-|||+-
T Consensus 776 ~G~RVLiFSQFTqmLDILE~~L~~l---------~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt 846 (941)
T KOG0389|consen 776 KGDRVLIFSQFTQMLDILEVVLDTL---------GYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLT 846 (941)
T ss_pred cCCEEEEeeHHHHHHHHHHHHHHhc---------CceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceeccc
Confidence 3678999987555555555555544 888899999999999999999997554 34689999999999999
Q ss_pred CeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCCCCeEEEecCHhhHh
Q 011751 331 GIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFD 390 (478)
Q Consensus 331 ~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~ 390 (478)
+.++||- ||-..+ |..--+..-|+-|.|-..+=.+|+|++++..+
T Consensus 847 ~An~VIi--------hD~dFN-------P~dD~QAEDRcHRvGQtkpVtV~rLItk~TIE 891 (941)
T KOG0389|consen 847 CANTVII--------HDIDFN-------PYDDKQAEDRCHRVGQTKPVTVYRLITKSTIE 891 (941)
T ss_pred ccceEEE--------eecCCC-------CcccchhHHHHHhhCCcceeEEEEEEecCcHH
Confidence 9999886 653322 44444455566666655578899999887543
No 161
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.04 E-value=4e-05 Score=68.56 Aligned_cols=62 Identities=21% Similarity=0.286 Sum_probs=44.0
Q ss_pred cHHHHHHHHHHHhcC--CEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHH
Q 011751 15 IASVEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKR 78 (478)
Q Consensus 15 ~~~~q~~~~~~l~~~--~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~ 78 (478)
+.+-|.+++..+..+ +.++|+||.|+||||++..+.... ...+..++++.|+..++....+.
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~--~~~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEAL--EAAGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHH--HHTT--EEEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHH--HhCCCeEEEECCcHHHHHHHHHh
Confidence 456799999998543 478899999999998876544221 12356899999999998776654
No 162
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.02 E-value=0.00032 Score=77.29 Aligned_cols=54 Identities=13% Similarity=-0.069 Sum_probs=37.5
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHh
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (478)
+.-+|.-.+|||||...-.++...........+++++-++.|-.|..+.+....
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~ 327 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFG 327 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHH
Confidence 458899999999993333332222112346789999999999999988776543
No 163
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.00 E-value=1.1e-07 Score=86.93 Aligned_cols=48 Identities=23% Similarity=0.185 Sum_probs=38.8
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
+++.+....|+-.++-+.+...+.+|+.+.|.||+||||||++..+.-
T Consensus 3 L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 3 LEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred eEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhc
Confidence 344555666776777788888899999999999999999999977664
No 164
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=98.00 E-value=0.0012 Score=71.10 Aligned_cols=111 Identities=23% Similarity=0.236 Sum_probs=68.7
Q ss_pred cCCcHHHHHHHHHHHhc-CCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCE
Q 011751 12 SLPIASVEKRLVEEVRK-NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQR 90 (478)
Q Consensus 12 ~~~~~~~q~~~~~~l~~-~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~ 90 (478)
.+.+.+-|++++..+.. ++.++|+|++|+||||++..+.... ...+..++++.|+-.++....+ ..+.. ..+
T Consensus 350 ~~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~--~~~g~~V~~~ApTg~Aa~~L~~----~~g~~-a~T 422 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAW--EAAGYRVIGAALSGKAAEGLQA----ESGIE-SRT 422 (744)
T ss_pred cCCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHH--HhCCCeEEEEeCcHHHHHHHHh----ccCCc-eee
Confidence 35678899999999877 5789999999999998887654322 2235678889999877755533 22221 011
Q ss_pred EEEEEeecccCChhhhHHHHhh-CcCcCCCcceEeecccccchhhhHHHHHHHH
Q 011751 91 VGYSIRFDDRTSTSTRIKEALL-DPYLSRYSAIIVDEAHERTVHTDVLLGLLKK 143 (478)
Q Consensus 91 vg~~~~~~~~~~~~~~~~~~l~-~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~ 143 (478)
+. ..+..+.. ...+...++|||||+- .+.+..+..+++.
T Consensus 423 i~------------~~~~~~~~~~~~~~~~~llIvDEas--Mv~~~~~~~Ll~~ 462 (744)
T TIGR02768 423 LA------------SLEYAWANGRDLLSDKDVLVIDEAG--MVGSRQMARVLKE 462 (744)
T ss_pred HH------------HHHhhhccCcccCCCCcEEEEECcc--cCCHHHHHHHHHH
Confidence 00 00011111 1235678999999996 3444444444443
No 165
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.92 E-value=0.00014 Score=71.55 Aligned_cols=88 Identities=20% Similarity=0.309 Sum_probs=52.6
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhhcCcc--CCCc--EEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCChh
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFHAGFC--RDGK--LIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTS 104 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~~~~~--~~~~--~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~ 104 (478)
+..++++||||+||||.+..++...... .++. .++-+-+.|..+.++.+.+++..+.++ .+. ...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv--~~~---------~~~ 242 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV--KAI---------ESF 242 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcce--Eee---------CcH
Confidence 4678999999999998887776543321 1222 344455666777666666666555432 111 111
Q ss_pred hhHHHHhhCcCcCCCcceEeecccc
Q 011751 105 TRIKEALLDPYLSRYSAIIVDEAHE 129 (478)
Q Consensus 105 ~~~~~~l~~~~l~~~~~lIiDE~H~ 129 (478)
..+...+. .+.++++||||++.-
T Consensus 243 ~~l~~~L~--~~~~~DlVLIDTaGr 265 (388)
T PRK12723 243 KDLKEEIT--QSKDFDLVLVDTIGK 265 (388)
T ss_pred HHHHHHHH--HhCCCCEEEEcCCCC
Confidence 22333332 246799999999964
No 166
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.83 E-value=0.00018 Score=76.97 Aligned_cols=177 Identities=19% Similarity=0.240 Sum_probs=104.7
Q ss_pred ceEEEEcCCCCh-hHH---HhhhCCC-----CeEEeCCccccc---eEEecC----C--CCcchHHHHHHHHHHhhhcCC
Q 011751 192 LKLIIMSASLDA-RGF---SEYFGCA-----KAVHVQGRQFPV---EILYTL----Y--PEPDYLDATLITIFQVHLDEA 253 (478)
Q Consensus 192 ~~~i~lSAT~~~-~~~---~~~~~~~-----~~~~~~~~~~~~---~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~ 253 (478)
..+|++|||+.+ ..| .+.+|-. ..+.++.+ ++. ...+.. . ...++.......+..+.. .
T Consensus 457 ~~vIltSATL~~~~~f~~~~~~lGL~~~~~~~~~~~~Sp-F~~~~q~~l~vp~~~~~p~~~~~~~~~~~~~i~~l~~-~- 533 (697)
T PRK11747 457 PGAVLTSATLRSLNSFDRFQEQSGLPEKDGDRFLALPSP-FDYPNQGKLVIPKMRAEPDNEEAHTAEMAEFLPELLE-K- 533 (697)
T ss_pred CEEEEEeeeCCCCCchHHHHHHcCCCCCCCceEEEcCCC-CCHHHccEEEeCCCCCCCCCcHHHHHHHHHHHHHHHh-c-
Confidence 457999999944 333 3444532 12333332 221 122221 1 223456666666766665 3
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCC----CCccEEEEecccccccccc
Q 011751 254 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAA----AGFRKVILATNIAETSVTI 329 (478)
Q Consensus 254 ~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~----~g~~~vlvaT~~~~~Gvdi 329 (478)
++.+|||++|.+..+.++..|.... +..+.. ++.. .+..+++.|+ .|.-.||++|..+..|||+
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~--------~~~ll~-Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~ 601 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDL--------RLMLLV-QGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDL 601 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhc--------CCcEEE-eCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccC
Confidence 5569999999999999999987531 223332 4532 3555664444 5677899999999999999
Q ss_pred CC--eEEEEeCCcccceeecCC----------CCcccc--eeeecCHHHHHHhhcccCCCC--CCeEEEe
Q 011751 330 PG--IKYVIDPGFVKARLYDPV----------KGMESL--LVVPISKAQALQRSGRAGREG--PGKCFRL 383 (478)
Q Consensus 330 p~--v~~VI~~g~~~~~~yd~~----------~~~~~~--~~~~~s~~~~~Qr~GRaGR~~--~G~~~~l 383 (478)
|+ .++||-.|++=..--||. .|-..+ ...|.....+.|-+||.=|.. .|..+.+
T Consensus 602 pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~il 671 (697)
T PRK11747 602 PGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTIL 671 (697)
T ss_pred CCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEE
Confidence 85 677876665421111110 011111 112445567899999999987 6765544
No 167
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.83 E-value=0.0076 Score=66.20 Aligned_cols=112 Identities=20% Similarity=0.224 Sum_probs=68.2
Q ss_pred cCCcHHHHHHHHHHHhcC-CEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCE
Q 011751 12 SLPIASVEKRLVEEVRKN-DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQR 90 (478)
Q Consensus 12 ~~~~~~~q~~~~~~l~~~-~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~ 90 (478)
.+.+.+-|++++..+..+ +.++|+|+.|+||||++..+... +...+..++.+.|+-.++....+ ..+.. ..+
T Consensus 344 g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~--~e~~G~~V~~~ApTGkAA~~L~e----~tGi~-a~T 416 (988)
T PRK13889 344 GLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREA--WEAAGYEVRGAALSGIAAENLEG----GSGIA-SRT 416 (988)
T ss_pred CCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEecCcHHHHHHHhh----ccCcc-hhh
Confidence 466888999999988874 57889999999999886543321 22235678889999887754432 11211 000
Q ss_pred EEEEEeecccCChhhhHHHHh-hCcCcCCCcceEeecccccchhhhHHHHHHHHH
Q 011751 91 VGYSIRFDDRTSTSTRIKEAL-LDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKV 144 (478)
Q Consensus 91 vg~~~~~~~~~~~~~~~~~~l-~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~ 144 (478)
+ ...+..+. ....+...++|||||+- .+.+..+..+++..
T Consensus 417 I------------~sll~~~~~~~~~l~~~~vlIVDEAS--Mv~~~~m~~LL~~a 457 (988)
T PRK13889 417 I------------ASLEHGWGQGRDLLTSRDVLVIDEAG--MVGTRQLERVLSHA 457 (988)
T ss_pred H------------HHHHhhhcccccccccCcEEEEECcc--cCCHHHHHHHHHhh
Confidence 0 00000111 12235667899999996 45555555555543
No 168
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.81 E-value=0.00012 Score=76.22 Aligned_cols=65 Identities=25% Similarity=0.307 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcC--cc-CCCcEEEEecchHHHHHHHHHHHHH
Q 011751 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAG--FC-RDGKLIGVTQPRRVAAVTVAKRVAE 81 (478)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~--~~-~~~~~i~~~~p~~~l~~~~~~~~~~ 81 (478)
..|+.++.....++.++|+|++|+||||++..++.... .. .++..+.++.||--++....+.+..
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHh
Confidence 68999999999999999999999999988766653221 11 1124689999999888777666544
No 169
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.80 E-value=6.2e-05 Score=69.31 Aligned_cols=67 Identities=22% Similarity=0.339 Sum_probs=52.6
Q ss_pred cHHHHHHHHHHHhcCCE-EEEEcCCCCcHHhHHHHHHhhcC------ccCCCcEEEEecchHHHHHHHHHHHHH
Q 011751 15 IASVEKRLVEEVRKNDI-LIIVGETGSGKTTQLPQFLFHAG------FCRDGKLIGVTQPRRVAAVTVAKRVAE 81 (478)
Q Consensus 15 ~~~~q~~~~~~l~~~~~-~~i~apTGsGKT~~~~~~~~~~~------~~~~~~~i~~~~p~~~l~~~~~~~~~~ 81 (478)
+.+.|.+++..+..... .+|.||+|+|||+++..++.... ....+..++++.|+..++.....++.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 35689999999999988 99999999999987777766551 234477899999999999999998876
No 170
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.79 E-value=0.00013 Score=65.71 Aligned_cols=37 Identities=30% Similarity=0.332 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
...+.+...+.+|+.+.|+||+||||||++..+-...
T Consensus 19 ~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3455666778899999999999999999997776443
No 171
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.79 E-value=1.1e-05 Score=73.66 Aligned_cols=144 Identities=20% Similarity=0.186 Sum_probs=81.3
Q ss_pred CchhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccC--------------CCcEEEEecc
Q 011751 2 PRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR--------------DGKLIGVTQP 67 (478)
Q Consensus 2 ~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~--------------~~~~i~~~~p 67 (478)
+++++.+....|.-.++.+.+...+..|+.+.|+||+||||||++-.++-...... ++.++.|+ |
T Consensus 3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYV-P 81 (254)
T COG1121 3 PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYV-P 81 (254)
T ss_pred cEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEc-C
Confidence 45566666666664357777778889999999999999999999988874221100 11345554 3
Q ss_pred hHHHHH-----HHHHHHHHHhCCcC-----------------CCEE---EEEEeecccCChhhhHHHHhhCcCcCCCcce
Q 011751 68 RRVAAV-----TVAKRVAEESGVEL-----------------GQRV---GYSIRFDDRTSTSTRIKEALLDPYLSRYSAI 122 (478)
Q Consensus 68 ~~~l~~-----~~~~~~~~~~~~~~-----------------~~~v---g~~~~~~~~~~~~~~~~~~l~~~~l~~~~~l 122 (478)
.+.... .+.+-+.--..... -..+ .+..+.-+..|.....+.+++..+.++.+++
T Consensus 82 Q~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~ll 161 (254)
T COG1121 82 QKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLL 161 (254)
T ss_pred cccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEE
Confidence 433211 11111100000000 0011 1222333445666777788888899999999
Q ss_pred Eeecccc--cchhhhHHHHHHHHHHH
Q 011751 123 IVDEAHE--RTVHTDVLLGLLKKVQN 146 (478)
Q Consensus 123 IiDE~H~--r~~~~~~~l~~l~~~~~ 146 (478)
++||-=. .......++.+++++..
T Consensus 162 lLDEP~~gvD~~~~~~i~~lL~~l~~ 187 (254)
T COG1121 162 LLDEPFTGVDVAGQKEIYDLLKELRQ 187 (254)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHH
Confidence 9999421 22233445555555543
No 172
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.79 E-value=0.00027 Score=59.53 Aligned_cols=50 Identities=20% Similarity=0.133 Sum_probs=32.8
Q ss_pred HHHHHHHHHhc--CCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchH
Q 011751 18 VEKRLVEEVRK--NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRR 69 (478)
Q Consensus 18 ~q~~~~~~l~~--~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~ 69 (478)
...++...+.. ++.+++.||+|+|||+++..++..... .+..++++....
T Consensus 6 ~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~~~ 57 (151)
T cd00009 6 AIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR--PGAPFLYLNASD 57 (151)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhc--CCCCeEEEehhh
Confidence 44555556655 789999999999999888766655431 133455554433
No 173
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.79 E-value=0.00024 Score=76.04 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=49.9
Q ss_pred hcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHH
Q 011751 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVA 76 (478)
Q Consensus 11 ~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~ 76 (478)
..+.+.+-|++++..+..++.++|+|+.|+||||++..++.......+...++++.||--++....
T Consensus 320 ~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~ 385 (720)
T TIGR01448 320 LRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLG 385 (720)
T ss_pred cCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHH
Confidence 346778899999999999999999999999999888665543221111156888899988876443
No 174
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.79 E-value=0.00041 Score=67.36 Aligned_cols=86 Identities=23% Similarity=0.297 Sum_probs=46.5
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEE--EEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCChhhhH
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLI--GVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRI 107 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i--~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~ 107 (478)
+.++++||||+||||.+..++.... ..+..+ +-.-|.|..+.++.+..++..+..+ .+. .. ...+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~--~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv--~v~--------~d-~~~L 308 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFH--GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV--IAV--------RD-EAAM 308 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH--HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcE--Eec--------CC-HHHH
Confidence 6889999999999988877765432 223333 3333566555555444444444321 100 11 1222
Q ss_pred HHHhhCc-CcCCCcceEeeccc
Q 011751 108 KEALLDP-YLSRYSAIIVDEAH 128 (478)
Q Consensus 108 ~~~l~~~-~l~~~~~lIiDE~H 128 (478)
...+... ...++++|+||-+=
T Consensus 309 ~~aL~~lk~~~~~DvVLIDTaG 330 (436)
T PRK11889 309 TRALTYFKEEARVDYILIDTAG 330 (436)
T ss_pred HHHHHHHHhccCCCEEEEeCcc
Confidence 2222211 12258999999874
No 175
>PRK14974 cell division protein FtsY; Provisional
Probab=97.77 E-value=0.00035 Score=67.40 Aligned_cols=98 Identities=17% Similarity=0.296 Sum_probs=51.1
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEec--chHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCChhhhH
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ--PRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRI 107 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~--p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~ 107 (478)
..++++|++|+||||.+..++.... ..+..++++. +.|..+..+.+..+...+..+.. ...........
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~--~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~-------~~~g~dp~~v~ 211 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLK--KNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIK-------HKYGADPAAVA 211 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceec-------ccCCCCHHHHH
Confidence 5788999999999987766664321 2234454443 34555554555555555543211 00011111212
Q ss_pred HHHhhCcCcCCCcceEeecccccchhhhH
Q 011751 108 KEALLDPYLSRYSAIIVDEAHERTVHTDV 136 (478)
Q Consensus 108 ~~~l~~~~l~~~~~lIiDE~H~r~~~~~~ 136 (478)
...+......++++|+||.++....+.++
T Consensus 212 ~~ai~~~~~~~~DvVLIDTaGr~~~~~~l 240 (336)
T PRK14974 212 YDAIEHAKARGIDVVLIDTAGRMHTDANL 240 (336)
T ss_pred HHHHHHHHhCCCCEEEEECCCccCCcHHH
Confidence 22222122346889999999744333333
No 176
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.74 E-value=0.00034 Score=67.78 Aligned_cols=103 Identities=29% Similarity=0.319 Sum_probs=64.2
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCc--EEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCChhh
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGK--LIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTST 105 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~--~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 105 (478)
+++++.++||||.||||.+..++....+..+.. .++=+-..|..+..+.+..++..+.++ .+. .++..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~--~vv--------~~~~e 271 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL--EVV--------YSPKE 271 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCce--EEe--------cCHHH
Confidence 378999999999999977777766655333322 344456678888888888888888763 111 12222
Q ss_pred hHHHHhhCcCcCCCcceEeecccccchhhhHHHHHHHHH
Q 011751 106 RIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKV 144 (478)
Q Consensus 106 ~~~~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~ 144 (478)
....+ ..+.++++|.+|=+- |+..-...+.-++.+
T Consensus 272 l~~ai---~~l~~~d~ILVDTaG-rs~~D~~~i~el~~~ 306 (407)
T COG1419 272 LAEAI---EALRDCDVILVDTAG-RSQYDKEKIEELKEL 306 (407)
T ss_pred HHHHH---HHhhcCCEEEEeCCC-CCccCHHHHHHHHHH
Confidence 22222 246678999999874 333333444444443
No 177
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.72 E-value=0.00027 Score=73.73 Aligned_cols=66 Identities=21% Similarity=0.229 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCc--cCCCcEEEEecchHHHHHHHHHHHHH
Q 011751 16 ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF--CRDGKLIGVTQPRRVAAVTVAKRVAE 81 (478)
Q Consensus 16 ~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~--~~~~~~i~~~~p~~~l~~~~~~~~~~ 81 (478)
.+.|+.++.....++.++|+|++|+||||++..++..... ......+.++.||.-++....+.+..
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHh
Confidence 3689999999999999999999999999887666543211 11235788999999998877776643
No 178
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=97.71 E-value=8.1e-05 Score=71.43 Aligned_cols=56 Identities=14% Similarity=0.017 Sum_probs=29.5
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHh---hcCccCCCcEEEEecchHHHHHHHHHHHHHHh
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLF---HAGFCRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~---~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (478)
...+..++.-..|+|||..+-.++. ..........++|++|. .+..+....+.+..
T Consensus 23 ~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~ 81 (299)
T PF00176_consen 23 SPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWF 81 (299)
T ss_dssp TTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcccc
Confidence 3556789999999999955544443 22111112247788888 44455666666665
No 179
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.70 E-value=3.6e-05 Score=68.96 Aligned_cols=54 Identities=20% Similarity=0.103 Sum_probs=43.3
Q ss_pred chhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCcc
Q 011751 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC 56 (478)
Q Consensus 3 ~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~ 56 (478)
++++.+....+.-.++...+.-.+..|++.+|.||+||||||++..+..+....
T Consensus 31 li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps 84 (257)
T COG1119 31 LIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS 84 (257)
T ss_pred eEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC
Confidence 455556666666667778888889999999999999999999998888766544
No 180
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.70 E-value=2.9e-06 Score=76.33 Aligned_cols=125 Identities=21% Similarity=0.176 Sum_probs=73.8
Q ss_pred CchhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccC-------------CCcEEEEecch
Q 011751 2 PRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-------------DGKLIGVTQPR 68 (478)
Q Consensus 2 ~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~-------------~~~~i~~~~p~ 68 (478)
..+++.+..+.|+-..+.+.+...+.+|+.+.|.||+||||||++..+.--..... +....++.+-.
T Consensus 2 ~~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~ 81 (248)
T COG1116 2 ALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQED 81 (248)
T ss_pred ceEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccC
Confidence 34555667777777777888888899999999999999999999988873322111 11223333333
Q ss_pred HHHHHH-HHHHHH-----------------HHhCCcCCCEEEEEEeecccCChhhhHHHHhhCcCcCCCcceEeecc
Q 011751 69 RVAAVT-VAKRVA-----------------EESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEA 127 (478)
Q Consensus 69 ~~l~~~-~~~~~~-----------------~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~l~~~~l~~~~~lIiDE~ 127 (478)
+.+-+- +.+++. ...-..+ ..-|+...+....|...+.+..+...+..+.+++.+||-
T Consensus 82 ~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~V-gL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEP 157 (248)
T COG1116 82 ALLPWLTVLDNVALGLELRGKSKAEARERAKELLELV-GLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEP 157 (248)
T ss_pred cccchhhHHhhheehhhccccchHhHHHHHHHHHHHc-CCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 222110 011110 0000000 111223334444566666677777778889999999994
No 181
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.69 E-value=2e-05 Score=69.14 Aligned_cols=51 Identities=29% Similarity=0.319 Sum_probs=43.9
Q ss_pred chhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 3 ~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
++++.+..++|.-..+.+.+...+..|+.++|+||+||||||++.-+-...
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 456778888999888899999999999999999999999999987665443
No 182
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.69 E-value=4.5e-05 Score=66.11 Aligned_cols=48 Identities=25% Similarity=0.287 Sum_probs=37.5
Q ss_pred hhHHHhhhcCCcHH-HHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 4 QKILQQRKSLPIAS-VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 4 ~~~~~~~~~~~~~~-~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
+++.+..+.|+... .-+++...+.+|+.+.+-||+|+||||++..+.-
T Consensus 2 l~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiat 50 (245)
T COG4555 2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIAT 50 (245)
T ss_pred eeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHH
Confidence 45566777776632 5567777889999999999999999998876663
No 183
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.68 E-value=0.01 Score=65.64 Aligned_cols=112 Identities=20% Similarity=0.207 Sum_probs=70.6
Q ss_pred cCCcHHHHHHHHHHHh-cCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCE
Q 011751 12 SLPIASVEKRLVEEVR-KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQR 90 (478)
Q Consensus 12 ~~~~~~~q~~~~~~l~-~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~ 90 (478)
.+.+.+-|.+++..+. .++.++|+|+.|+||||++..+... +...+..++.+.|+--.+.... +..+.. ..+
T Consensus 379 ~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~--~e~~G~~V~g~ApTgkAA~~L~----e~~Gi~-a~T 451 (1102)
T PRK13826 379 HARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREA--WEAAGYRVVGGALAGKAAEGLE----KEAGIQ-SRT 451 (1102)
T ss_pred CCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEEcCcHHHHHHHH----HhhCCC-eee
Confidence 4678889999999874 5788999999999999888765432 2223667888899987775553 333322 111
Q ss_pred EEEEEeecccCChhhhHHHH-hhCcCcCCCcceEeecccccchhhhHHHHHHHHH
Q 011751 91 VGYSIRFDDRTSTSTRIKEA-LLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKV 144 (478)
Q Consensus 91 vg~~~~~~~~~~~~~~~~~~-l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~ 144 (478)
+. .-+..+ .....+..-++|||||+. .+.+..+..+++..
T Consensus 452 Ia------------s~ll~~~~~~~~l~~~~vlVIDEAs--Mv~~~~m~~Ll~~~ 492 (1102)
T PRK13826 452 LS------------SWELRWNQGRDQLDNKTVFVLDEAG--MVASRQMALFVEAV 492 (1102)
T ss_pred HH------------HHHhhhccCccCCCCCcEEEEECcc--cCCHHHHHHHHHHH
Confidence 10 000011 011235567899999996 55555555555544
No 184
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.67 E-value=2.5e-05 Score=67.06 Aligned_cols=51 Identities=18% Similarity=0.278 Sum_probs=42.4
Q ss_pred hhHHHhhhcCCcHH-HHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcC
Q 011751 4 QKILQQRKSLPIAS-VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAG 54 (478)
Q Consensus 4 ~~~~~~~~~~~~~~-~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~ 54 (478)
+++.++.+.||..+ ..+.+...+..|+.+.++||+|+||||++.++.....
T Consensus 2 I~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~ 53 (223)
T COG2884 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER 53 (223)
T ss_pred eeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc
Confidence 45677788887654 7778888899999999999999999999988876554
No 185
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.63 E-value=0.00013 Score=69.36 Aligned_cols=71 Identities=14% Similarity=0.070 Sum_probs=47.8
Q ss_pred hhcCCcHHHHHH----HHHHHhcCCEEEEEcCCCCcHHhHHHHHHh--hcCccC--CCcEEEEecchHHHHHHHHHHHH
Q 011751 10 RKSLPIASVEKR----LVEEVRKNDILIIVGETGSGKTTQLPQFLF--HAGFCR--DGKLIGVTQPRRVAAVTVAKRVA 80 (478)
Q Consensus 10 ~~~~~~~~~q~~----~~~~l~~~~~~~i~apTGsGKT~~~~~~~~--~~~~~~--~~~~i~~~~p~~~l~~~~~~~~~ 80 (478)
...|.+++.|.+ +...+.+|+++++.+|||+|||..+...++ ...... .+.++++..++..+..+....+.
T Consensus 4 ~FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00489 4 YFPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 355667899998 677778999999999999999933332222 111111 12368888888888776655554
No 186
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.63 E-value=0.00013 Score=69.36 Aligned_cols=71 Identities=14% Similarity=0.070 Sum_probs=47.8
Q ss_pred hhcCCcHHHHHH----HHHHHhcCCEEEEEcCCCCcHHhHHHHHHh--hcCccC--CCcEEEEecchHHHHHHHHHHHH
Q 011751 10 RKSLPIASVEKR----LVEEVRKNDILIIVGETGSGKTTQLPQFLF--HAGFCR--DGKLIGVTQPRRVAAVTVAKRVA 80 (478)
Q Consensus 10 ~~~~~~~~~q~~----~~~~l~~~~~~~i~apTGsGKT~~~~~~~~--~~~~~~--~~~~i~~~~p~~~l~~~~~~~~~ 80 (478)
...|.+++.|.+ +...+.+|+++++.+|||+|||..+...++ ...... .+.++++..++..+..+....+.
T Consensus 4 ~FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00488 4 YFPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 355667899998 677778999999999999999933332222 111111 12368888888888776655554
No 187
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.63 E-value=3.7e-05 Score=66.70 Aligned_cols=118 Identities=16% Similarity=0.171 Sum_probs=67.8
Q ss_pred hcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEec-chHHHHHHHHHHHHHHhCCcCCC
Q 011751 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ-PRRVAAVTVAKRVAEESGVELGQ 89 (478)
Q Consensus 11 ~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~-p~~~l~~~~~~~~~~~~~~~~~~ 89 (478)
+.++-.+..+.+...+.+|+.+.+.||+||||||++..+.-..... .| .+.+-. +.... ...+ . ...
T Consensus 8 ~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-~G-~v~~~g~~~~~~--~~~~----~----~~~ 75 (163)
T cd03216 8 KRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD-SG-EILVDGKEVSFA--SPRD----A----RRA 75 (163)
T ss_pred EEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC-Ce-EEEECCEECCcC--CHHH----H----Hhc
Confidence 3344333445555667899999999999999999998776443221 22 233211 00000 0000 0 112
Q ss_pred EEEEEEeecccCChhhhHHHHhhCcCcCCCcceEeecc--cccchhhhHHHHHHHHH
Q 011751 90 RVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEA--HERTVHTDVLLGLLKKV 144 (478)
Q Consensus 90 ~vg~~~~~~~~~~~~~~~~~~l~~~~l~~~~~lIiDE~--H~r~~~~~~~l~~l~~~ 144 (478)
.++|..+ .+...+.+..+...++.+.+++++||. +........+..+++++
T Consensus 76 ~i~~~~q----LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~ 128 (163)
T cd03216 76 GIAMVYQ----LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRL 128 (163)
T ss_pred CeEEEEe----cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 3555544 666666666667778888999999995 22333344445555544
No 188
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.62 E-value=9.5e-05 Score=63.90 Aligned_cols=71 Identities=23% Similarity=0.168 Sum_probs=51.0
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCC----cEEEEecchHHHHHH
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDG----KLIGVTQPRRVAAVT 74 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~----~~i~~~~p~~~l~~~ 74 (478)
.++.+..+.+.-..+...+...+.+|+.+.++||+|+||||++..+........+. ..-+--.|++.++..
T Consensus 2 I~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~ 76 (252)
T COG4604 2 ITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKK 76 (252)
T ss_pred eeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHH
Confidence 45677888888888888888899999999999999999999987665433322211 122344567777643
No 189
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.61 E-value=0.001 Score=71.28 Aligned_cols=181 Identities=19% Similarity=0.212 Sum_probs=104.7
Q ss_pred ceEEEEcCCC-ChhHHHhhhCC---CCe---EEeCCccccce--EEecCC--CC---cchHHHHHHHHHHhhhcCCCCCE
Q 011751 192 LKLIIMSASL-DARGFSEYFGC---AKA---VHVQGRQFPVE--ILYTLY--PE---PDYLDATLITIFQVHLDEAPGDI 257 (478)
Q Consensus 192 ~~~i~lSAT~-~~~~~~~~~~~---~~~---~~~~~~~~~~~--~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~ 257 (478)
..+|++|||+ +.+.|..+++. ... +.++.+..... ..+... +. +.+.......+..+.... ++++
T Consensus 404 ~~~vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~spf~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~ 482 (654)
T COG1199 404 ASVVLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSPFNYEEQGQLYVPTDLPEPREPELLAKLAAYLREILKAS-PGGV 482 (654)
T ss_pred CcEEEeeeeccCCCcHHHHHHHcCCccccceeccCCCCChhhcceEeccccCCCCCChHHHHHHHHHHHHHHhhc-CCCE
Confidence 4589999999 44555555432 211 22222111111 111111 11 145555556666655544 6699
Q ss_pred EEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCcc-EEEEeccccccccccCCe--EE
Q 011751 258 LVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFR-KVILATNIAETSVTIPGI--KY 334 (478)
Q Consensus 258 LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~-~vlvaT~~~~~Gvdip~v--~~ 334 (478)
|||+||.+..+.+++.+..... . .....+|..+.+ ..++.|+++.- -++|+|..+..|||+|+= +.
T Consensus 483 lvlF~Sy~~l~~~~~~~~~~~~-------~-~~v~~q~~~~~~---~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~ 551 (654)
T COG1199 483 LVLFPSYEYLKRVAERLKDERS-------T-LPVLTQGEDERE---ELLEKFKASGEGLILVGGGSFWEGVDFPGDALRL 551 (654)
T ss_pred EEEeccHHHHHHHHHHHhhcCc-------c-ceeeecCCCcHH---HHHHHHHHhcCCeEEEeeccccCcccCCCCCeeE
Confidence 9999999999999999876411 0 233345555544 55555554443 899999999999999854 45
Q ss_pred EEeCCcccce----------eecCCCCc--ccceeeecCHHHHHHhhcccCCCC--CCeEEEec
Q 011751 335 VIDPGFVKAR----------LYDPVKGM--ESLLVVPISKAQALQRSGRAGREG--PGKCFRLY 384 (478)
Q Consensus 335 VI~~g~~~~~----------~yd~~~~~--~~~~~~~~s~~~~~Qr~GRaGR~~--~G~~~~l~ 384 (478)
||-.|+.=.. .|....|. -.....|.......|-+||+=|.. .|.++.+=
T Consensus 552 vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD 615 (654)
T COG1199 552 VVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLD 615 (654)
T ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEec
Confidence 5544442211 11111110 011234666788999999999976 57666553
No 190
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.60 E-value=0.00054 Score=66.87 Aligned_cols=89 Identities=16% Similarity=0.240 Sum_probs=51.2
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEe--cchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCChh
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT--QPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTS 104 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~--~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~ 104 (478)
..|++++++||||+||||++..++.......+..++.++ -+.|..+.++.+.+.+..+..+.. .. ..
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~-------~~----~~ 203 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA-------VK----DG 203 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe-------cC----Cc
Confidence 457899999999999998888777654332222233333 334555666666666666543210 00 01
Q ss_pred hhHHHHhhCcCcCCCcceEeeccc
Q 011751 105 TRIKEALLDPYLSRYSAIIVDEAH 128 (478)
Q Consensus 105 ~~~~~~l~~~~l~~~~~lIiDE~H 128 (478)
..+...+. .+.+.++++||++=
T Consensus 204 ~~l~~~l~--~l~~~DlVLIDTaG 225 (374)
T PRK14722 204 GDLQLALA--ELRNKHMVLIDTIG 225 (374)
T ss_pred ccHHHHHH--HhcCCCEEEEcCCC
Confidence 11111221 24567999999984
No 191
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.60 E-value=0.00038 Score=74.93 Aligned_cols=180 Identities=12% Similarity=0.124 Sum_probs=103.3
Q ss_pred eEEEEcCCC-ChhHHHhhhCCCCeEEe-CCcccc-----------------ceEEecCCCCcchHHHHHHHHHHhhhcCC
Q 011751 193 KLIIMSASL-DARGFSEYFGCAKAVHV-QGRQFP-----------------VEILYTLYPEPDYLDATLITIFQVHLDEA 253 (478)
Q Consensus 193 ~~i~lSAT~-~~~~~~~~~~~~~~~~~-~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (478)
.+|++|||+ +.+.+.+.+|-...... .....+ +...|.....+++.......+..+....
T Consensus 443 svil~SgTL~p~~~~~~~Lg~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~l~~~i~~~~~~~- 521 (705)
T TIGR00604 443 SVILASGTLSPLDAFPRNLGFNPVSQDSPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLGELLVEFSKII- 521 (705)
T ss_pred EEEEecccCCcHHHHHHHhCCCCccceecCcccchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHHHHHHHHHHhhcC-
Confidence 579999999 77778887774321111 111111 1112222222445555556666665544
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHH--hcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCC----CccEEEEec--ccccc
Q 011751 254 PGDILVFLTGQEEIESVERLVQERL--LQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAA----GFRKVILAT--NIAET 325 (478)
Q Consensus 254 ~~~~LVF~~s~~~~~~l~~~l~~~~--~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~----g~~~vlvaT--~~~~~ 325 (478)
+|.+|||.||....+.+.+.+.+.. ..+.. ...+-+.+ .+. .++..+++.|+. |.-.|++|+ ..+..
T Consensus 522 pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~-~k~i~~E~--~~~--~~~~~~l~~f~~~~~~~~gavL~av~gGk~sE 596 (705)
T TIGR00604 522 PDGIVVFFPSYSYLENIVSTWKEMGILENIEK-KKLIFVET--KDA--QETSDALERYKQAVSEGRGAVLLSVAGGKVSE 596 (705)
T ss_pred CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhc-CCCEEEeC--CCc--chHHHHHHHHHHHHhcCCceEEEEecCCcccC
Confidence 6889999999999999988876521 00000 01222222 111 456777777753 455699998 88999
Q ss_pred ccccCC--eEEEEeCCcccceeecCC--------------CCcccceeeecCHHHHHHhhcccCCCCCCe
Q 011751 326 SVTIPG--IKYVIDPGFVKARLYDPV--------------KGMESLLVVPISKAQALQRSGRAGREGPGK 379 (478)
Q Consensus 326 Gvdip~--v~~VI~~g~~~~~~yd~~--------------~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~ 379 (478)
|||+++ .+.||-.|++-....|+. .+...... ........|-+||+=|...-.
T Consensus 597 GIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~-~~a~~~v~QaiGR~IR~~~D~ 665 (705)
T TIGR00604 597 GIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYE-FDAMRAVNQAIGRVIRHKDDY 665 (705)
T ss_pred ccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHH-HHHHHHHHHHhCccccCcCce
Confidence 999986 577777887652222211 11100000 122355789999999988443
No 192
>PRK06526 transposase; Provisional
Probab=97.59 E-value=0.00017 Score=67.01 Aligned_cols=40 Identities=20% Similarity=0.232 Sum_probs=26.7
Q ss_pred HHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEec
Q 011751 25 EVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (478)
Q Consensus 25 ~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~ 66 (478)
-+..+++++++||+|+|||+++..+...... .+..+++..
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~al~~~a~~--~g~~v~f~t 133 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAIGLGIRACQ--AGHRVLFAT 133 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHHHHHHHHHH--CCCchhhhh
Confidence 3456789999999999999777655443321 244555543
No 193
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.58 E-value=4.4e-06 Score=76.30 Aligned_cols=43 Identities=26% Similarity=0.366 Sum_probs=31.5
Q ss_pred HhhhcCCcH-HHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHH
Q 011751 8 QQRKSLPIA-SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 8 ~~~~~~~~~-~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~ 50 (478)
+....++.. +..+.+...+..|+.+++.|+|||||||++..+.
T Consensus 8 ~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~ 51 (235)
T COG1122 8 NLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLN 51 (235)
T ss_pred EEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHc
Confidence 334444444 4455566677899999999999999999986654
No 194
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.58 E-value=0.0011 Score=66.49 Aligned_cols=88 Identities=26% Similarity=0.339 Sum_probs=49.0
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEE--EEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCChhh
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLI--GVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTST 105 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i--~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 105 (478)
.++.++++||||+||||.+..++.......++.++ +-.-|.|..+..+...++...+..+ .+ .... .
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~--~~--------~~~~-~ 288 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV--EV--------VYDP-K 288 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCce--Ec--------cCCH-H
Confidence 46789999999999998877766544311122333 3344556555555555555544331 11 0111 2
Q ss_pred hHHHHhhCcCcCCCcceEeeccc
Q 011751 106 RIKEALLDPYLSRYSAIIVDEAH 128 (478)
Q Consensus 106 ~~~~~l~~~~l~~~~~lIiDE~H 128 (478)
.+...+. .+.++++||||.+-
T Consensus 289 ~l~~~l~--~~~~~DlVlIDt~G 309 (424)
T PRK05703 289 ELAKALE--QLRDCDVILIDTAG 309 (424)
T ss_pred hHHHHHH--HhCCCCEEEEeCCC
Confidence 2222222 23468999999874
No 195
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.57 E-value=0.037 Score=65.80 Aligned_cols=246 Identities=17% Similarity=0.187 Sum_probs=126.3
Q ss_pred cCCcHHHHHHHHHHHhcC--CEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCC
Q 011751 12 SLPIASVEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ 89 (478)
Q Consensus 12 ~~~~~~~q~~~~~~l~~~--~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~ 89 (478)
.+++.+-|++++..+... +..+|+|+.|+||||++..+.... ...+..+..+.|+.-.+....+....... .+..
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~--~~~G~~V~~lAPTgrAA~~L~e~~g~~A~-Ti~~ 503 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLA--SEQGYEIQIITAGSLSAQELRQKIPRLAS-TFIT 503 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHH--HhcCCeEEEEeCCHHHHHHHHHHhcchhh-hHHH
Confidence 467788899999998764 799999999999998886665332 22367899999999887666553211100 0000
Q ss_pred EEEEEEeecccCChhhhHHHHh-hCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccCCCCCCCCCCCchhh
Q 011751 90 RVGYSIRFDDRTSTSTRIKEAL-LDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMI 168 (478)
Q Consensus 90 ~vg~~~~~~~~~~~~~~~~~~l-~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~ 168 (478)
......... ...+ +..++ .+..+..-++|||||+- .+.+..+..+++....
T Consensus 504 ~l~~l~~~~---~~~t-v~~fl~~~~~l~~~~vlIVDEAs--Ml~~~~~~~Ll~~a~~---------------------- 555 (1960)
T TIGR02760 504 WVKNLFNDD---QDHT-VQGLLDKSSPFSNKDIFVVDEAN--KLSNNELLKLIDKAEQ---------------------- 555 (1960)
T ss_pred HHHhhcccc---cchh-HHHhhcccCCCCCCCEEEEECCC--CCCHHHHHHHHHHHhh----------------------
Confidence 000000000 0000 11111 11234567999999996 4555555555554322
Q ss_pred hccCCCCCCccccccccCCCCCCceEEEEcCCC------ChhHHHhhh-CCCCeEEeCCcc-ccceEEecCCCCcchHHH
Q 011751 169 LDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL------DARGFSEYF-GCAKAVHVQGRQ-FPVEILYTLYPEPDYLDA 240 (478)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~------~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 240 (478)
.+.|+|++.=+- .-.-|.... .+.+........ ..-.+........+....
T Consensus 556 ---------------------~garvVlvGD~~QL~sV~aG~~f~~L~~~gv~t~~l~~i~rq~~~v~i~~~~~~~r~~~ 614 (1960)
T TIGR02760 556 ---------------------HNSKLILLNDSAQRQGMSAGSAIDLLKEGGVTTYAWVDTKQQKASVEISEAVDKLRVDY 614 (1960)
T ss_pred ---------------------cCCEEEEEcChhhcCccccchHHHHHHHCCCcEEEeecccccCcceeeeccCchHHHHH
Confidence 334555543211 111222111 122333322211 111111111112222223
Q ss_pred HHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCC-CCCeEEEEcc-CCCCHHHHHhhcCcCCCC
Q 011751 241 TLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEA-SRKLVTVPIF-SSLPSEQQMRVFAPAAAG 312 (478)
Q Consensus 241 ~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~-~~~~~v~~~h-~~l~~~~r~~i~~~f~~g 312 (478)
....+..+.. ...+++|+.++.++...+...++..+.....- ..+..+..+. ..++..++... ..|+.|
T Consensus 615 ia~~y~~L~~--~r~~tliv~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~G 685 (1960)
T TIGR02760 615 IASAWLDLTP--DRQNSQVLATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQG 685 (1960)
T ss_pred HHHHHHhccc--ccCceEEEcCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCC
Confidence 3333333322 35569999999999999999999887321111 1234444443 35777777643 444444
No 196
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.57 E-value=0.00018 Score=70.72 Aligned_cols=91 Identities=20% Similarity=0.224 Sum_probs=55.0
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCChhhhHHH
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIKE 109 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~ 109 (478)
+.++|.|..|||||.++..++........+..++++.+...+.....+.+....... . ........+....
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~~---~------~~~~~~~~~~~i~ 72 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNPK---L------KKSDFRKPTSFIN 72 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhcccc---h------hhhhhhhhHHHHh
Confidence 468999999999997776666655222335567788888888877777665543100 0 0011111111111
Q ss_pred H--hhCcCcCCCcceEeecccc
Q 011751 110 A--LLDPYLSRYSAIIVDEAHE 129 (478)
Q Consensus 110 ~--l~~~~l~~~~~lIiDE~H~ 129 (478)
. ........+++|||||||.
T Consensus 73 ~~~~~~~~~~~~DviivDEAqr 94 (352)
T PF09848_consen 73 NYSESDKEKNKYDVIIVDEAQR 94 (352)
T ss_pred hcccccccCCcCCEEEEehhHh
Confidence 1 1234567899999999993
No 197
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.56 E-value=0.0026 Score=61.70 Aligned_cols=91 Identities=27% Similarity=0.305 Sum_probs=49.6
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCChhhh
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTR 106 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 106 (478)
..++.++++||||+||||.+..+............++-.-|.|..+..+.+..++..+..+ .+ ... ...
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv--~~--------~~d-p~d 272 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVEL--IV--------ATS-PAE 272 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCE--Ee--------cCC-HHH
Confidence 3578899999999999988877765432221122233344566655555444444433321 11 011 222
Q ss_pred HHHHhhC-cCcCCCcceEeeccc
Q 011751 107 IKEALLD-PYLSRYSAIIVDEAH 128 (478)
Q Consensus 107 ~~~~l~~-~~l~~~~~lIiDE~H 128 (478)
+...+.. ....++++|+||=+-
T Consensus 273 L~~al~~l~~~~~~D~VLIDTAG 295 (407)
T PRK12726 273 LEEAVQYMTYVNCVDHILIDTVG 295 (407)
T ss_pred HHHHHHHHHhcCCCCEEEEECCC
Confidence 2322221 123568999999874
No 198
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.55 E-value=1.9e-06 Score=82.08 Aligned_cols=51 Identities=24% Similarity=0.360 Sum_probs=43.8
Q ss_pred CCchhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
|..+++.+..+.|+-....+.+...+.+|+.+++.||+||||||++..++-
T Consensus 1 M~~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 1 MAELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred CcEEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 666778888888876656777888899999999999999999999988874
No 199
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.54 E-value=5.5e-05 Score=67.73 Aligned_cols=51 Identities=24% Similarity=0.212 Sum_probs=40.3
Q ss_pred CCchhHHHhhhcCCcHH----HHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 1 MPRQKILQQRKSLPIAS----VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 1 ~~~~~~~~~~~~~~~~~----~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
|+++++.+....|+-.. .-+.+...+..|+.+.|+|+.||||||++..++-
T Consensus 1 ~~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 1 MTLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhc
Confidence 34566666666676655 6667777788999999999999999999988773
No 200
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.54 E-value=0.00014 Score=60.83 Aligned_cols=42 Identities=24% Similarity=0.266 Sum_probs=29.2
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHH
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAA 72 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~ 72 (478)
+..+++.||+|||||+++..++....... ..++++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccc
Confidence 57899999999999999987776654321 2355555554433
No 201
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.53 E-value=0.00024 Score=70.03 Aligned_cols=102 Identities=21% Similarity=0.342 Sum_probs=67.0
Q ss_pred HHHHHHHHHHH------hcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHH--HHHHHHHhCCcC
Q 011751 16 ASVEKRLVEEV------RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTV--AKRVAEESGVEL 87 (478)
Q Consensus 16 ~~~q~~~~~~l------~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~--~~~~~~~~~~~~ 87 (478)
.+-|+++.+.+ .++.++.|.||-|+|||+++..+..... ..+..+++++||..+|..+ +..+...++..+
T Consensus 3 n~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~--~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~ 80 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLR--SRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIPI 80 (364)
T ss_pred CHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhc--cccceEEEecchHHHHHhccCCcchHHhcCccc
Confidence 35577777777 8889999999999999998877665432 2356799999999998777 444556666543
Q ss_pred CCEEEEEEeecccCChhhhHHHHhhCcCcCCCcceEeeccc
Q 011751 88 GQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEAH 128 (478)
Q Consensus 88 ~~~vg~~~~~~~~~~~~~~~~~~l~~~~l~~~~~lIiDE~H 128 (478)
+..-- .......... ....+.+.+++|+||+=
T Consensus 81 ~~~~~----~~~~~~~~~~-----~~~~l~~~~~lIiDEis 112 (364)
T PF05970_consen 81 NNNEK----SQCKISKNSR-----LRERLRKADVLIIDEIS 112 (364)
T ss_pred ccccc----ccccccccch-----hhhhhhhheeeeccccc
Confidence 22100 0000111111 12356779999999984
No 202
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.52 E-value=3.3e-06 Score=80.99 Aligned_cols=126 Identities=19% Similarity=0.251 Sum_probs=76.8
Q ss_pred CchhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccC-----CCcEEEEecchHHHHHHHH
Q 011751 2 PRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-----DGKLIGVTQPRRVAAVTVA 76 (478)
Q Consensus 2 ~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~-----~~~~i~~~~p~~~l~~~~~ 76 (478)
+.+++.+..+.|.-....+.+...+.+|+.+.+.||+||||||++..++--..... ++..+--++|.+=-+.-++
T Consensus 4 ~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VF 83 (352)
T COG3842 4 PALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVF 83 (352)
T ss_pred ceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceee
Confidence 45677778888887777788888999999999999999999999988773322211 1222233444332222222
Q ss_pred HHHHHHhCCcCCCEEEEEEe-----------------------------ecccCChhhhHHHHhhCcCcCCCcceEeecc
Q 011751 77 KRVAEESGVELGQRVGYSIR-----------------------------FDDRTSTSTRIKEALLDPYLSRYSAIIVDEA 127 (478)
Q Consensus 77 ~~~~~~~~~~~~~~vg~~~~-----------------------------~~~~~~~~~~~~~~l~~~~l~~~~~lIiDE~ 127 (478)
...+-+....+...|+|... .....+...+.+..+...+..+.+++.+||-
T Consensus 84 Q~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEP 163 (352)
T COG3842 84 QSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEP 163 (352)
T ss_pred cCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCc
Confidence 22223333333333333322 2223344444445666677888999999995
No 203
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.48 E-value=0.001 Score=58.25 Aligned_cols=96 Identities=16% Similarity=0.097 Sum_probs=58.1
Q ss_pred HHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCCh
Q 011751 24 EEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTST 103 (478)
Q Consensus 24 ~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~ 103 (478)
..+.+|+.+.++||+||||||++..+.-..... .| .+.+-. ..+++..+.. ..+.
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G-~i~~~g----------------------~~i~~~~q~~-~LSg 74 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN-GD-NDEWDG----------------------ITPVYKPQYI-DLSG 74 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCCCCC-Cc-EEEECC----------------------EEEEEEcccC-CCCH
Confidence 367899999999999999999997765432211 12 232211 1234433221 1566
Q ss_pred hhhHHHHhhCcCcCCCcceEeeccc--ccchhhhHHHHHHHHH
Q 011751 104 STRIKEALLDPYLSRYSAIIVDEAH--ERTVHTDVLLGLLKKV 144 (478)
Q Consensus 104 ~~~~~~~l~~~~l~~~~~lIiDE~H--~r~~~~~~~l~~l~~~ 144 (478)
..+.+..+...++.+.+++++||-- ........+...++++
T Consensus 75 Gq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~ 117 (177)
T cd03222 75 GELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRL 117 (177)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 6666666666778889999999953 2223334444444443
No 204
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.47 E-value=0.00041 Score=58.73 Aligned_cols=97 Identities=22% Similarity=0.277 Sum_probs=59.3
Q ss_pred HHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecc
Q 011751 20 KRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDD 99 (478)
Q Consensus 20 ~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~ 99 (478)
+.+...+.+|+.+.|.||+||||||++..+.-..... .| .+.+ .- ...++|..+
T Consensus 17 ~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G-~i~~-~~--------------------~~~i~~~~~--- 70 (144)
T cd03221 17 KDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD-EG-IVTW-GS--------------------TVKIGYFEQ--- 70 (144)
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC-ce-EEEE-CC--------------------eEEEEEEcc---
Confidence 3344456799999999999999999987765433211 12 2322 11 024454433
Q ss_pred cCChhhhHHHHhhCcCcCCCcceEeeccc--ccchhhhHHHHHHHH
Q 011751 100 RTSTSTRIKEALLDPYLSRYSAIIVDEAH--ERTVHTDVLLGLLKK 143 (478)
Q Consensus 100 ~~~~~~~~~~~l~~~~l~~~~~lIiDE~H--~r~~~~~~~l~~l~~ 143 (478)
.+...+.+..+......+.+++++||.- ......+.+..++++
T Consensus 71 -lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~ 115 (144)
T cd03221 71 -LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKE 115 (144)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 5666666666666778899999999953 233333444444443
No 205
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.47 E-value=0.00085 Score=63.38 Aligned_cols=27 Identities=33% Similarity=0.626 Sum_probs=21.4
Q ss_pred hcCC-EEEEEcCCCCcHHhHHHHHHhhc
Q 011751 27 RKND-ILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 27 ~~~~-~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
..+. .++++||+|+||||++..+....
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 4434 78999999999999998776543
No 206
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.43 E-value=0.001 Score=58.26 Aligned_cols=110 Identities=18% Similarity=0.178 Sum_probs=60.1
Q ss_pred HHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCc---cCC-----CcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEE
Q 011751 22 LVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF---CRD-----GKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGY 93 (478)
Q Consensus 22 ~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~---~~~-----~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~ 93 (478)
+...+..|+.+.+.||+||||||++..++...+. ... ...+.++. . ..+.+..+... ..
T Consensus 14 isl~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~-q--------~~~l~~~~L~~-~~--- 80 (176)
T cd03238 14 LDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFID-Q--------LQFLIDVGLGY-LT--- 80 (176)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEh-H--------HHHHHHcCCCc-cc---
Confidence 3445678999999999999999999766422111 000 01133322 1 11222233210 00
Q ss_pred EEeecccCChhhhHHHHhhCcCcCC--CcceEeecc--cccchhhhHHHHHHHHH
Q 011751 94 SIRFDDRTSTSTRIKEALLDPYLSR--YSAIIVDEA--HERTVHTDVLLGLLKKV 144 (478)
Q Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~l~~--~~~lIiDE~--H~r~~~~~~~l~~l~~~ 144 (478)
........+...+.+..+....+.+ .+++++||. +........+...++++
T Consensus 81 ~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~ 135 (176)
T cd03238 81 LGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGL 135 (176)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 0011233455566666666677788 999999995 33334445555555554
No 207
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.41 E-value=0.00049 Score=59.85 Aligned_cols=112 Identities=23% Similarity=0.257 Sum_probs=62.9
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCC------CcEEEEecchHHHH-HHHHHHHHHHhCCcCCCE
Q 011751 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD------GKLIGVTQPRRVAA-VTVAKRVAEESGVELGQR 90 (478)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~------~~~i~~~~p~~~l~-~~~~~~~~~~~~~~~~~~ 90 (478)
..+.+...+.+|+.+.|+||+||||||++..+.-......+ ...+.++.+...+. ....+.+. . .
T Consensus 16 ~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~----~--~-- 87 (166)
T cd03223 16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLI----Y--P-- 87 (166)
T ss_pred eeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhh----c--c--
Confidence 34455566789999999999999999998777654322211 12233433322111 01111110 0 0
Q ss_pred EEEEEeecccCChhhhHHHHhhCcCcCCCcceEeecc--cccchhhhHHHHHHHH
Q 011751 91 VGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEA--HERTVHTDVLLGLLKK 143 (478)
Q Consensus 91 vg~~~~~~~~~~~~~~~~~~l~~~~l~~~~~lIiDE~--H~r~~~~~~~l~~l~~ 143 (478)
.....+...+.+..+....+.+.+++++||- +........+..++++
T Consensus 88 ------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~ 136 (166)
T cd03223 88 ------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKE 136 (166)
T ss_pred ------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHH
Confidence 1234566666666666677889999999994 3333333444444443
No 208
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.40 E-value=0.0015 Score=66.08 Aligned_cols=90 Identities=19% Similarity=0.320 Sum_probs=48.6
Q ss_pred HhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEe--cchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCCh
Q 011751 26 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT--QPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTST 103 (478)
Q Consensus 26 l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~--~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~ 103 (478)
+..|+.++++||||+||||++..++........+..+.++ -+.+..+.++.+......+ ..+. . ...
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLg----v~v~----~---a~d 415 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLG----IAVH----E---ADS 415 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccC----ceeE----e---cCc
Confidence 4568899999999999998887766543332222333333 3445544444333322222 1111 1 011
Q ss_pred hhhHHHHhhCcCcCCCcceEeeccc
Q 011751 104 STRIKEALLDPYLSRYSAIIVDEAH 128 (478)
Q Consensus 104 ~~~~~~~l~~~~l~~~~~lIiDE~H 128 (478)
...+...+. .+.++++||||.+-
T Consensus 416 ~~~L~~aL~--~l~~~DLVLIDTaG 438 (559)
T PRK12727 416 AESLLDLLE--RLRDYKLVLIDTAG 438 (559)
T ss_pred HHHHHHHHH--HhccCCEEEecCCC
Confidence 122333332 24568999999985
No 209
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.40 E-value=0.003 Score=60.78 Aligned_cols=91 Identities=21% Similarity=0.262 Sum_probs=48.7
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEe--cchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCChhhh
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT--QPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTR 106 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~--~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 106 (478)
++.++++||+|+||||.+..++..... .+.++.++ -+.+..+.++........+. ++....... .+...
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~--~g~~V~Li~~D~~r~~a~eql~~~a~~~~i------~~~~~~~~~-dpa~~ 184 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKA--QGKKVLLAAGDTFRAAAIEQLQVWGERVGV------PVIAQKEGA-DPASV 184 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHh--cCCeEEEEecCccchhhHHHHHHHHHHcCc------eEEEeCCCC-CHHHH
Confidence 568899999999999887776654432 23344433 34455554444444444432 222221111 11111
Q ss_pred HHHHhhCcCcCCCcceEeeccc
Q 011751 107 IKEALLDPYLSRYSAIIVDEAH 128 (478)
Q Consensus 107 ~~~~l~~~~l~~~~~lIiDE~H 128 (478)
....+......++++||||=+-
T Consensus 185 v~~~l~~~~~~~~D~ViIDTaG 206 (318)
T PRK10416 185 AFDAIQAAKARGIDVLIIDTAG 206 (318)
T ss_pred HHHHHHHHHhCCCCEEEEeCCC
Confidence 1122222244679999999875
No 210
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.40 E-value=0.0014 Score=65.04 Aligned_cols=88 Identities=17% Similarity=0.218 Sum_probs=52.3
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHhhcCccCC--CcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCChh
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRD--GKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTS 104 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~--~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~ 104 (478)
..|+.+.++||||+||||++..+........+ ...++.....|..+.++...+++..+..... ....
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~----------v~~~- 257 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRS----------IKDI- 257 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceec----------CCCH-
Confidence 35778999999999999998777654322211 2234455555666666666666666543210 0111
Q ss_pred hhHHHHhhCcCcCCCcceEeecc
Q 011751 105 TRIKEALLDPYLSRYSAIIVDEA 127 (478)
Q Consensus 105 ~~~~~~l~~~~l~~~~~lIiDE~ 127 (478)
......+. .+.+.+.++||.+
T Consensus 258 ~dl~~al~--~l~~~d~VLIDTa 278 (420)
T PRK14721 258 ADLQLMLH--ELRGKHMVLIDTV 278 (420)
T ss_pred HHHHHHHH--HhcCCCEEEecCC
Confidence 11122222 3567899999986
No 211
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.38 E-value=0.00025 Score=63.46 Aligned_cols=51 Identities=27% Similarity=0.277 Sum_probs=43.2
Q ss_pred chhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 3 ~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.+++.+..+.|.-..+-..+...+..|+.+.|.||+||||||++..++-..
T Consensus 8 ~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll 58 (263)
T COG1127 8 LIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL 58 (263)
T ss_pred eEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccC
Confidence 456667777888888888888999999999999999999999998877544
No 212
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.38 E-value=0.00011 Score=64.50 Aligned_cols=114 Identities=23% Similarity=0.241 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEec-chHHHHHHHHHHHHHHhCCcCCCEEEEEE
Q 011751 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ-PRRVAAVTVAKRVAEESGVELGQRVGYSI 95 (478)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~-p~~~l~~~~~~~~~~~~~~~~~~~vg~~~ 95 (478)
+..+.+...+.+|+.+.|+||+||||||++..+.-..... .| .+.+-- +..... ... ...++|..
T Consensus 14 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G-~i~~~g~~~~~~~----~~~--------~~~i~~~~ 79 (173)
T cd03230 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD-SG-EIKVLGKDIKKEP----EEV--------KRRIGYLP 79 (173)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-Ce-EEEECCEEcccch----Hhh--------hccEEEEe
Confidence 3445556667899999999999999999987765433211 22 232211 100000 001 12344433
Q ss_pred eeccc-----------CChhhhHHHHhhCcCcCCCcceEeeccc--ccchhhhHHHHHHHHH
Q 011751 96 RFDDR-----------TSTSTRIKEALLDPYLSRYSAIIVDEAH--ERTVHTDVLLGLLKKV 144 (478)
Q Consensus 96 ~~~~~-----------~~~~~~~~~~l~~~~l~~~~~lIiDE~H--~r~~~~~~~l~~l~~~ 144 (478)
+.... .+...+.+..+......+.+++++||.- ......+.+..+++++
T Consensus 80 q~~~~~~~~tv~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~ 141 (173)
T cd03230 80 EEPSLYENLTVRENLKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLREL 141 (173)
T ss_pred cCCccccCCcHHHHhhcCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 32111 3344444445556677889999999953 2333344455555544
No 213
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=97.37 E-value=0.00035 Score=69.96 Aligned_cols=49 Identities=22% Similarity=0.308 Sum_probs=45.1
Q ss_pred CchhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHH
Q 011751 2 PRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 2 ~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~ 50 (478)
+++++.+..+.||..+..+.+...+..|+...+.|.||+||||++-.+.
T Consensus 7 ~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLs 55 (500)
T COG1129 7 PLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILS 55 (500)
T ss_pred ceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHh
Confidence 4678889999999999999999999999999999999999999987665
No 214
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.34 E-value=0.00016 Score=67.04 Aligned_cols=51 Identities=22% Similarity=0.191 Sum_probs=38.4
Q ss_pred CCchhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
|+.+++.+..+.++-.+.-+.+...+..|+.+.|+||+||||||++..++-
T Consensus 1 ~~~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (241)
T PRK14250 1 MNEIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINR 51 (241)
T ss_pred CceEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 444556666666654445566667788999999999999999999987774
No 215
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.33 E-value=6.2e-05 Score=64.90 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=37.9
Q ss_pred CCchhHHHhhhcCCc--HHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHH
Q 011751 1 MPRQKILQQRKSLPI--ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 1 ~~~~~~~~~~~~~~~--~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~ 50 (478)
|+.+.+.+....|+- .+..+.+.-.+.+|+.+++.||+||||||++..++
T Consensus 1 M~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~A 52 (259)
T COG4525 1 MCMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIA 52 (259)
T ss_pred CceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHh
Confidence 334444445555543 34777788888999999999999999999998877
No 216
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.31 E-value=0.001 Score=58.30 Aligned_cols=115 Identities=19% Similarity=0.208 Sum_probs=62.0
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEee
Q 011751 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRF 97 (478)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~ 97 (478)
..+.+...+.+|+.+.|.||+||||||++..+.-..... .| .+.+- ... +.......+. ..++|..+.
T Consensus 17 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G-~i~~~-g~~-~~~~~~~~~~--------~~i~~~~q~ 84 (173)
T cd03246 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT-SG-RVRLD-GAD-ISQWDPNELG--------DHVGYLPQD 84 (173)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC-CC-eEEEC-CEE-cccCCHHHHH--------hheEEECCC
Confidence 344455567899999999999999999987776543221 22 23221 110 0000000011 112222211
Q ss_pred c---------ccCChhhhHHHHhhCcCcCCCcceEeecc--cccchhhhHHHHHHHHH
Q 011751 98 D---------DRTSTSTRIKEALLDPYLSRYSAIIVDEA--HERTVHTDVLLGLLKKV 144 (478)
Q Consensus 98 ~---------~~~~~~~~~~~~l~~~~l~~~~~lIiDE~--H~r~~~~~~~l~~l~~~ 144 (478)
. ...+...+.+..+....+.+.+++++||. +........+..+++++
T Consensus 85 ~~~~~~tv~~~lLS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~ 142 (173)
T cd03246 85 DELFSGSIAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAAL 142 (173)
T ss_pred CccccCcHHHHCcCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHH
Confidence 1 11455555555666677889999999995 33333444555555544
No 217
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.30 E-value=0.00019 Score=64.26 Aligned_cols=142 Identities=20% Similarity=0.184 Sum_probs=82.5
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccC-----C--------CcEEEEecchHH
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-----D--------GKLIGVTQPRRV 70 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~-----~--------~~~i~~~~p~~~ 70 (478)
+++.+..+.|.-......+...+.+|+.+.+.||+|+||||.+..++--..... . ..++.+++--|.
T Consensus 3 L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERG 82 (300)
T COG4152 3 LEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERG 82 (300)
T ss_pred eEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhc
Confidence 567788899998888999999999999999999999999999987773322211 1 125666666555
Q ss_pred HH-----HHHHHHHHHHhCCcC-------------CCEEEEEEeecccCChhhhHHHHhhCcCcCCCcceEeeccc--cc
Q 011751 71 AA-----VTVAKRVAEESGVEL-------------GQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEAH--ER 130 (478)
Q Consensus 71 l~-----~~~~~~~~~~~~~~~-------------~~~vg~~~~~~~~~~~~~~~~~~l~~~~l~~~~~lIiDE~H--~r 130 (478)
+. ..+...++..-|.+. -...++...--...+.....+--+-...+.+..++|+||-- ..
T Consensus 83 Ly~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLD 162 (300)
T COG4152 83 LYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLD 162 (300)
T ss_pred cCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCC
Confidence 53 233333443333221 00111111111111111111111112356788999999954 35
Q ss_pred chhhhHHHHHHHHHH
Q 011751 131 TVHTDVLLGLLKKVQ 145 (478)
Q Consensus 131 ~~~~~~~l~~l~~~~ 145 (478)
.+.+.++-..+.++.
T Consensus 163 PVN~elLk~~I~~lk 177 (300)
T COG4152 163 PVNVELLKDAIFELK 177 (300)
T ss_pred hhhHHHHHHHHHHHH
Confidence 566666666655554
No 218
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.30 E-value=1.8e-06 Score=77.28 Aligned_cols=101 Identities=20% Similarity=0.215 Sum_probs=64.4
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHh
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (478)
+++.+..+.|........+...+.+|+.++++||+||||||.+..+-.. .......+.+ ..+.+....
T Consensus 2 I~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrL--iept~G~I~i----------~g~~i~~~d 69 (309)
T COG1125 2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRL--IEPTSGEILI----------DGEDISDLD 69 (309)
T ss_pred ceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcc--cCCCCceEEE----------CCeecccCC
Confidence 4566677777777777778888899999999999999999988654322 1212222332 122222222
Q ss_pred CCcCCCEEEEEEeecccCChhhhHHHHhhCcCc
Q 011751 84 GVELGQRVGYSIRFDDRTSTSTRIKEALLDPYL 116 (478)
Q Consensus 84 ~~~~~~~vg~~~~~~~~~~~~~~~~~~l~~~~l 116 (478)
...+...+||.++..+..+..+...++..-+.+
T Consensus 70 ~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L 102 (309)
T COG1125 70 PVELRRKIGYVIQQIGLFPHLTVAENIATVPKL 102 (309)
T ss_pred HHHHHHhhhhhhhhcccCCCccHHHHHHhhhhh
Confidence 233445678888888877777777655544433
No 219
>PRK04296 thymidine kinase; Provisional
Probab=97.29 E-value=0.00044 Score=61.53 Aligned_cols=37 Identities=30% Similarity=0.339 Sum_probs=27.7
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecc
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 67 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p 67 (478)
|...+++||+|+||||.+..++...... +.+++++.|
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEec
Confidence 5678999999999999888887665332 556666655
No 220
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.28 E-value=0.0023 Score=61.11 Aligned_cols=92 Identities=24% Similarity=0.219 Sum_probs=53.7
Q ss_pred HHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecc
Q 011751 20 KRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDD 99 (478)
Q Consensus 20 ~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~ 99 (478)
.-+...+..+.+++|+|+|||||||++..++..........+++.+....++.. .....+.... ..
T Consensus 123 ~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~------------~~~~~v~~~~--~~ 188 (299)
T TIGR02782 123 DVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQC------------AAPNVVQLRT--SD 188 (299)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcC------------CCCCEEEEEe--cC
Confidence 345556677889999999999999998776644322122456777766655421 1112233221 11
Q ss_pred cCChhhhHHHHhhCcCcCCCcceEeeccc
Q 011751 100 RTSTSTRIKEALLDPYLSRYSAIIVDEAH 128 (478)
Q Consensus 100 ~~~~~~~~~~~l~~~~l~~~~~lIiDE~H 128 (478)
... ....++...+-.+.+.+|+.|+-
T Consensus 189 ~~~---~~~~~l~~aLR~~pD~iivGEiR 214 (299)
T TIGR02782 189 DAI---SMTRLLKATLRLRPDRIIVGEVR 214 (299)
T ss_pred CCC---CHHHHHHHHhcCCCCEEEEeccC
Confidence 111 22233333444679999999994
No 221
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.28 E-value=7.7e-05 Score=74.06 Aligned_cols=51 Identities=25% Similarity=0.277 Sum_probs=41.0
Q ss_pred CCchhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
|+++++.+..+.|+-..+.+.+...+.+|+.+.+.||+||||||++..+.-
T Consensus 1 ~~~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaG 51 (402)
T PRK09536 1 MPMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAING 51 (402)
T ss_pred CceEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhc
Confidence 556667777777766556666777788999999999999999999987764
No 222
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.28 E-value=0.00067 Score=66.85 Aligned_cols=139 Identities=22% Similarity=0.332 Sum_probs=84.5
Q ss_pred CchhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccC-----CCcEEEEecchHHHHH---
Q 011751 2 PRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-----DGKLIGVTQPRRVAAV--- 73 (478)
Q Consensus 2 ~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~-----~~~~i~~~~p~~~l~~--- 73 (478)
+.+++.+..+.||-.-.-..+...+..|+...+.|.+|+||||+...+.-...... +++.+-+-.|..+...
T Consensus 3 ~~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIG 82 (501)
T COG3845 3 PALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIG 82 (501)
T ss_pred ceEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCc
Confidence 34566777888887777778888899999999999999999998866552221111 1333344444444321
Q ss_pred ------------------------------------HHHHHHHHHhCCcCC--CEEEEEEeecccCChhhhHHHHhhCcC
Q 011751 74 ------------------------------------TVAKRVAEESGVELG--QRVGYSIRFDDRTSTSTRIKEALLDPY 115 (478)
Q Consensus 74 ------------------------------------~~~~~~~~~~~~~~~--~~vg~~~~~~~~~~~~~~~~~~l~~~~ 115 (478)
...+++.+.++..+. ..|+ ..+...+.+.-+...+
T Consensus 83 MVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~-------dLsVG~qQRVEIlKaL 155 (501)
T COG3845 83 MVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA-------DLSVGEQQRVEILKAL 155 (501)
T ss_pred EEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee-------cCCcchhHHHHHHHHH
Confidence 222223333333221 1111 1222222222222346
Q ss_pred cCCCcceEeec--ccccchhhhHHHHHHHHHHHh
Q 011751 116 LSRYSAIIVDE--AHERTVHTDVLLGLLKKVQNA 147 (478)
Q Consensus 116 l~~~~~lIiDE--~H~r~~~~~~~l~~l~~~~~~ 147 (478)
+.+.+++|+|| +.....+.+-++..++.+...
T Consensus 156 yr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~ 189 (501)
T COG3845 156 YRGARLLILDEPTAVLTPQEADELFEILRRLAAE 189 (501)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC
Confidence 77899999999 567788889999999877653
No 223
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.28 E-value=0.005 Score=56.77 Aligned_cols=92 Identities=17% Similarity=0.195 Sum_probs=48.2
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCChhhhHHH
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIKE 109 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~ 109 (478)
..+++.|++|+|||+++..++..... .+..++++. ...+ ...+...+.. ...+...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~--~g~~v~~it-~~~l----~~~l~~~~~~-------------~~~~~~~---- 155 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLL--RGKSVLIIT-VADI----MSAMKDTFSN-------------SETSEEQ---- 155 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEE-HHHH----HHHHHHHHhh-------------ccccHHH----
Confidence 47999999999999777655544322 245566653 2222 2222221110 0011111
Q ss_pred HhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhh
Q 011751 110 ALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (478)
Q Consensus 110 ~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~ 148 (478)
++. .+.+++++||||++... .++.-..++-.+...|
T Consensus 156 ~l~--~l~~~dlLvIDDig~~~-~s~~~~~~l~~Ii~~R 191 (244)
T PRK07952 156 LLN--DLSNVDLLVIDEIGVQT-ESRYEKVIINQIVDRR 191 (244)
T ss_pred HHH--HhccCCEEEEeCCCCCC-CCHHHHHHHHHHHHHH
Confidence 111 14579999999998644 3444444444444433
No 224
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.27 E-value=0.0051 Score=57.58 Aligned_cols=24 Identities=33% Similarity=0.639 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+..++++||+|+||||++..+...
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~ 98 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQ 98 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH
Confidence 478999999999999887766654
No 225
>PRK08181 transposase; Validated
Probab=97.26 E-value=0.004 Score=58.35 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=27.2
Q ss_pred HHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEec
Q 011751 25 EVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (478)
Q Consensus 25 ~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~ 66 (478)
-+..+++++++||+|+|||.++..+..... . .+..++++.
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~-~-~g~~v~f~~ 141 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAAAIGLALI-E-NGWRVLFTR 141 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHHHHHHHHHH-H-cCCceeeee
Confidence 356889999999999999977655543322 1 244566654
No 226
>PF13173 AAA_14: AAA domain
Probab=97.25 E-value=0.0019 Score=53.39 Aligned_cols=27 Identities=37% Similarity=0.474 Sum_probs=22.8
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhcC
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHAG 54 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~~ 54 (478)
+++.++|.||.|+||||++.+++....
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 367899999999999999988876543
No 227
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.24 E-value=9e-05 Score=69.13 Aligned_cols=50 Identities=22% Similarity=0.237 Sum_probs=36.8
Q ss_pred chhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 3 ~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
++++.+..+.++-.++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 4 ~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred EEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45555666666544444555566789999999999999999999877643
No 228
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.23 E-value=9.6e-05 Score=64.31 Aligned_cols=121 Identities=21% Similarity=0.253 Sum_probs=72.4
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEecc--ccccccccC
Q 011751 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN--IAETSVTIP 330 (478)
Q Consensus 253 ~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~--~~~~Gvdip 330 (478)
.+|++|||+||.+..+.+.+.+.+.... .++.+..- ...++..+++.|+++.-.|++++. .+..|||+|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~-----~~~~v~~q----~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEE-----KGIPVFVQ----GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E------ETSCEEES----TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--E
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhccc-----ccceeeec----CcchHHHHHHHHHhccCeEEEEEecccEEEeecCC
Confidence 3699999999999999998887653210 02223322 245677888889889889999999 999999999
Q ss_pred C--eEEEEeCCcccceeecCC-----------CCc-ccceeeecCHHHHHHhhcccCCCCCCeEEE
Q 011751 331 G--IKYVIDPGFVKARLYDPV-----------KGM-ESLLVVPISKAQALQRSGRAGREGPGKCFR 382 (478)
Q Consensus 331 ~--v~~VI~~g~~~~~~yd~~-----------~~~-~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~ 382 (478)
+ .+.||-.|++--..-|+. .+. ......|.......|-+||+=|..+-.+..
T Consensus 79 ~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i 144 (167)
T PF13307_consen 79 GDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVI 144 (167)
T ss_dssp CESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEE
T ss_pred CchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEE
Confidence 5 777877676532221211 000 001112444566889999999988544333
No 229
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.23 E-value=0.00037 Score=66.46 Aligned_cols=142 Identities=17% Similarity=0.124 Sum_probs=79.1
Q ss_pred hhHHHhhhcCC-cHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCC----------------CcEEEEec
Q 011751 4 QKILQQRKSLP-IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD----------------GKLIGVTQ 66 (478)
Q Consensus 4 ~~~~~~~~~~~-~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~----------------~~~i~~~~ 66 (478)
+++.+..+.|+ -....+.+...+.+|+.+.+.||+||||||++..++-......+ ...+.+++
T Consensus 5 i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~ 84 (293)
T COG1131 5 IEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVP 84 (293)
T ss_pred eeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEc
Confidence 34556677777 46777788888999999999999999999999877733221110 01122221
Q ss_pred -----chHHHHHHHHHHHHHHhCCc----------CCCEEEEEE---eecccCChhhhHHHHhhCcCcCCCcceEeeccc
Q 011751 67 -----PRRVAAVTVAKRVAEESGVE----------LGQRVGYSI---RFDDRTSTSTRIKEALLDPYLSRYSAIIVDEAH 128 (478)
Q Consensus 67 -----p~~~l~~~~~~~~~~~~~~~----------~~~~vg~~~---~~~~~~~~~~~~~~~l~~~~l~~~~~lIiDE~H 128 (478)
+-...+.+..+.++...+.. +-..+|... ......+...+.+..+...++.+.+++|+||-=
T Consensus 85 ~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt 164 (293)
T COG1131 85 QEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPT 164 (293)
T ss_pred cCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 11222334444444444321 001111111 112234555555555666778889999999952
Q ss_pred --ccchhhhHHHHHHHHHH
Q 011751 129 --ERTVHTDVLLGLLKKVQ 145 (478)
Q Consensus 129 --~r~~~~~~~l~~l~~~~ 145 (478)
........+..+++++.
T Consensus 165 ~GLDp~~~~~~~~~l~~l~ 183 (293)
T COG1131 165 SGLDPESRREIWELLRELA 183 (293)
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 22333344444555444
No 230
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.23 E-value=9.7e-05 Score=65.12 Aligned_cols=97 Identities=23% Similarity=0.239 Sum_probs=54.9
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEee
Q 011751 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRF 97 (478)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~ 97 (478)
..+.+...+.+|+.+.+.||+||||||++..+.-..... .| .+.+ .-.. .... ...+.. .++|..+.
T Consensus 17 ~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G-~i~~-~g~~-~~~~-~~~~~~--------~i~~~~q~ 83 (178)
T cd03247 17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ-QG-EITL-DGVP-VSDL-EKALSS--------LISVLNQR 83 (178)
T ss_pred ceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC-CC-EEEE-CCEE-HHHH-HHHHHh--------hEEEEccC
Confidence 344455667899999999999999999997776543221 23 3332 1111 1110 111111 12222111
Q ss_pred ------------cccCChhhhHHHHhhCcCcCCCcceEeecc
Q 011751 98 ------------DDRTSTSTRIKEALLDPYLSRYSAIIVDEA 127 (478)
Q Consensus 98 ------------~~~~~~~~~~~~~l~~~~l~~~~~lIiDE~ 127 (478)
....+...+.+..+....+.+.+++++||.
T Consensus 84 ~~~~~~tv~~~i~~~LS~G~~qrv~laral~~~p~~lllDEP 125 (178)
T cd03247 84 PYLFDTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEP 125 (178)
T ss_pred CeeecccHHHhhcccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 122344555555666677889999999995
No 231
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.21 E-value=0.0017 Score=62.45 Aligned_cols=92 Identities=23% Similarity=0.155 Sum_probs=49.0
Q ss_pred HHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccC
Q 011751 22 LVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRT 101 (478)
Q Consensus 22 ~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~ 101 (478)
+...+..+++++++|||||||||++..++.... ....++.+....++. ......++...+.....
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~---~~~~iv~ied~~El~------------~~~~~~~~l~~~~~~~~ 201 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP---KDERIITIEDTREIF------------LPHPNYVHLFYSKGGQG 201 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC---ccccEEEEcCccccC------------CCCCCEEEEEecCCCCC
Confidence 344567899999999999999999866553322 122344443222211 11123333322221111
Q ss_pred ChhhhHHHHhhCcCcCCCcceEeeccc
Q 011751 102 STSTRIKEALLDPYLSRYSAIIVDEAH 128 (478)
Q Consensus 102 ~~~~~~~~~l~~~~l~~~~~lIiDE~H 128 (478)
...-.....+...+-.+.+.+++||+-
T Consensus 202 ~~~~~~~~~l~~~Lr~~pd~ii~gE~r 228 (308)
T TIGR02788 202 LAKVTPKDLLQSCLRMRPDRIILGELR 228 (308)
T ss_pred cCccCHHHHHHHHhcCCCCeEEEeccC
Confidence 111122233333455678999999984
No 232
>PRK10536 hypothetical protein; Provisional
Probab=97.20 E-value=0.0008 Score=61.75 Aligned_cols=59 Identities=22% Similarity=0.233 Sum_probs=45.7
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHH
Q 011751 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRV 70 (478)
Q Consensus 12 ~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~ 70 (478)
.-|....|...+..+.++..+++.||+|||||+++..+.........-.+++++.|.-.
T Consensus 57 i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~ 115 (262)
T PRK10536 57 ILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQ 115 (262)
T ss_pred ccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCC
Confidence 34677889999999999999999999999999887776665433333456777777754
No 233
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.20 E-value=0.00044 Score=71.27 Aligned_cols=45 Identities=29% Similarity=0.428 Sum_probs=36.8
Q ss_pred HHHhhhcCCcH---HHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHH
Q 011751 6 ILQQRKSLPIA---SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 6 ~~~~~~~~~~~---~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~ 50 (478)
..++...||.+ ++-+.+...+..|+.+.++||+||||||++.++.
T Consensus 468 F~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~ 515 (716)
T KOG0058|consen 468 FEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLL 515 (716)
T ss_pred EEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHH
Confidence 34555566544 5788899999999999999999999999987766
No 234
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.19 E-value=0.00043 Score=61.64 Aligned_cols=59 Identities=24% Similarity=0.230 Sum_probs=40.5
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHH
Q 011751 13 LPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVA 71 (478)
Q Consensus 13 ~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l 71 (478)
-|....|+.+++++.+.+.+++.||.|||||+++-...++........+++++.|....
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEA 61 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCC
Confidence 36778999999999999999999999999998877777665555455678888777643
No 235
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.19 E-value=0.017 Score=57.16 Aligned_cols=86 Identities=27% Similarity=0.342 Sum_probs=50.2
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhhcCccCCC-cEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCChhhhH
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFHAGFCRDG-KLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRI 107 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~-~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~ 107 (478)
+..++++||||+||||++..++.......+. ..++-.-+.|..+.++.++.++..+... . . ......+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~---~--~------~~~~~~l 291 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPF---Y--P------VKDIKKF 291 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCe---e--e------hHHHHHH
Confidence 4568899999999999998888644222222 2234455667777766666665555431 0 0 0011122
Q ss_pred HHHhhCcCcCCCcceEeeccc
Q 011751 108 KEALLDPYLSRYSAIIVDEAH 128 (478)
Q Consensus 108 ~~~l~~~~l~~~~~lIiDE~H 128 (478)
...+. -.++++|+||=+-
T Consensus 292 ~~~l~---~~~~D~VLIDTaG 309 (432)
T PRK12724 292 KETLA---RDGSELILIDTAG 309 (432)
T ss_pred HHHHH---hCCCCEEEEeCCC
Confidence 22222 2568999999653
No 236
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.18 E-value=0.00017 Score=63.63 Aligned_cols=119 Identities=24% Similarity=0.267 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEec-------chHH--HHHHHHHHHHHHhCCcCC
Q 011751 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ-------PRRV--AAVTVAKRVAEESGVELG 88 (478)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~-------p~~~--l~~~~~~~~~~~~~~~~~ 88 (478)
..+.+...+.+|+.+.|.||+||||||++..+.-.... ..| .+.+-- +.+. .+....+ +.+..+..
T Consensus 14 ~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G-~v~~~g~~~~~~~~~~~~~~i~~~~q-~l~~~gl~-- 88 (180)
T cd03214 14 VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP-SSG-EILLDGKDLASLSPKELARKIAYVPQ-ALELLGLA-- 88 (180)
T ss_pred eEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCc-EEEECCEECCcCCHHHHHHHHhHHHH-HHHHcCCH--
Confidence 33444556779999999999999999998777644321 122 232211 1110 0000011 22222221
Q ss_pred CEEEEEEeecccCChhhhHHHHhhCcCcCCCcceEeecc--cccchhhhHHHHHHHHH
Q 011751 89 QRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEA--HERTVHTDVLLGLLKKV 144 (478)
Q Consensus 89 ~~vg~~~~~~~~~~~~~~~~~~l~~~~l~~~~~lIiDE~--H~r~~~~~~~l~~l~~~ 144 (478)
.. ........+...+.+..+...++.+.+++++||. +......+.+..+++++
T Consensus 89 ~~---~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~ 143 (180)
T cd03214 89 HL---ADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRL 143 (180)
T ss_pred hH---hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 00 0011233556666666666677888999999995 33334445555555554
No 237
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.17 E-value=2.6e-05 Score=71.23 Aligned_cols=121 Identities=17% Similarity=0.183 Sum_probs=68.9
Q ss_pred CchhHHHhhhcCCcH---------HHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEec-----c
Q 011751 2 PRQKILQQRKSLPIA---------SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ-----P 67 (478)
Q Consensus 2 ~~~~~~~~~~~~~~~---------~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~-----p 67 (478)
+++++.+..+.|+.. .....+...+.+|+.+.++|++||||||+...++...... ...+++-- .
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt--~G~i~f~g~~i~~~ 80 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT--SGEILFEGKDITKL 80 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCC--CceEEEcCcchhhc
Confidence 455666666666653 2334566778899999999999999999987777544322 12232211 0
Q ss_pred hHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCChhhhHHHHhhCcCcCCCcceEeeccc
Q 011751 68 RRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEAH 128 (478)
Q Consensus 68 ~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~l~~~~l~~~~~lIiDE~H 128 (478)
.+.........+-...+ ..-.+..++....+...+.+..++..+.-+.+++|.||.-
T Consensus 81 ~~~~~~~~v~elL~~Vg----l~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpv 137 (268)
T COG4608 81 SKEERRERVLELLEKVG----LPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPV 137 (268)
T ss_pred chhHHHHHHHHHHHHhC----CCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCch
Confidence 12111111111222222 1111122344455666666666666677789999999973
No 238
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.17 E-value=0.00034 Score=62.55 Aligned_cols=38 Identities=21% Similarity=0.362 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 16 ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 16 ~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.+..+.+...+..|+.+.|.||+||||||++..++-..
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34666677778899999999999999999987776543
No 239
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.17 E-value=0.0048 Score=65.47 Aligned_cols=88 Identities=19% Similarity=0.260 Sum_probs=52.1
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEe--cchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCChhh
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT--QPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTST 105 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~--~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 105 (478)
.++.++++||||+||||.+..+........+++++.++ -+.|..+..+.+.+.+..+..+. +. ... .
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~--~~--------~~~-~ 252 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH--AV--------KDA-A 252 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc--cc--------CCH-H
Confidence 36789999999999998887777544323222344333 24565566666666666664321 11 112 2
Q ss_pred hHHHHhhCcCcCCCcceEeeccc
Q 011751 106 RIKEALLDPYLSRYSAIIVDEAH 128 (478)
Q Consensus 106 ~~~~~l~~~~l~~~~~lIiDE~H 128 (478)
.+...+. .+.+.++|+||=+=
T Consensus 253 ~l~~al~--~~~~~D~VLIDTAG 273 (767)
T PRK14723 253 DLRFALA--ALGDKHLVLIDTVG 273 (767)
T ss_pred HHHHHHH--HhcCCCEEEEeCCC
Confidence 2333333 34567999999874
No 240
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.17 E-value=0.0054 Score=60.98 Aligned_cols=53 Identities=26% Similarity=0.344 Sum_probs=32.6
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEE--EecchHHHHHHHHHHHHHHhC
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIG--VTQPRRVAAVTVAKRVAEESG 84 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~--~~~p~~~l~~~~~~~~~~~~~ 84 (478)
..+.++|++|+||||.+..++.... ..+.++. -.-|.|..+.++.+.+++..+
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~--~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~ 155 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQ--RKGFKPCLVCADTFRAGAFDQLKQNATKAR 155 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--HCCCCEEEEcCcccchhHHHHHHHHhhccC
Confidence 4678999999999988777665432 2233333 344566666655554444433
No 241
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.17 E-value=0.00073 Score=62.78 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=36.2
Q ss_pred hHHHhhhcCCc-----HHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 5 KILQQRKSLPI-----ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 5 ~~~~~~~~~~~-----~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
++.+..+.|+- ....+.+...+..|+.+.|+|.+|+||||++..+-..
T Consensus 3 ~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~L 55 (339)
T COG1135 3 ELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLL 55 (339)
T ss_pred EEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhcc
Confidence 33444455543 3567778888999999999999999999999776543
No 242
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.17 E-value=0.0011 Score=54.82 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHhHHHHHHhhc
Q 011751 32 LIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 32 ~~i~apTGsGKT~~~~~~~~~~ 53 (478)
+++.||+|+|||+++..++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5899999999998887666554
No 243
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.16 E-value=0.00024 Score=68.30 Aligned_cols=49 Identities=24% Similarity=0.243 Sum_probs=38.3
Q ss_pred chhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 3 ~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
++++.+..+.|+-....+.+...+.+|+.+.+.||+||||||++..+.-
T Consensus 7 ~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~G 55 (306)
T PRK13537 7 PIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLG 55 (306)
T ss_pred eEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3455566667765556667777788999999999999999999988774
No 244
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.16 E-value=0.00036 Score=62.30 Aligned_cols=50 Identities=22% Similarity=0.309 Sum_probs=39.0
Q ss_pred CchhHHHhhhcCC-cHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 2 PRQKILQQRKSLP-IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 2 ~~~~~~~~~~~~~-~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
+.+++.+..+.|| -....+.+...|.+|+.+.|+||+||||||++..+--
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhc
Confidence 3556667777775 3445667777889999999999999999999876654
No 245
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.14 E-value=0.0031 Score=59.15 Aligned_cols=89 Identities=24% Similarity=0.276 Sum_probs=55.1
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhcCccCC-----CcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCCh-
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHAGFCRD-----GKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTST- 103 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~~~~~~-----~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~- 103 (478)
.+++|+|+|+-|||+++..+...+....+ -..+.+-.|...-....+..+-...+...... .....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~--------~~~~~~ 133 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPR--------DRVAKL 133 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCC--------CCHHHH
Confidence 47999999999999999988866543322 12455556666666666666666666553221 11111
Q ss_pred hhhHHHHhhCcCcCCCcceEeecccc
Q 011751 104 STRIKEALLDPYLSRYSAIIVDEAHE 129 (478)
Q Consensus 104 ~~~~~~~l~~~~l~~~~~lIiDE~H~ 129 (478)
......++. -.+++++||||+|.
T Consensus 134 ~~~~~~llr---~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 134 EQQVLRLLR---RLGVRMLIIDEFHN 156 (302)
T ss_pred HHHHHHHHH---HcCCcEEEeechHH
Confidence 111223332 23589999999994
No 246
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.13 E-value=0.0017 Score=55.89 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=25.3
Q ss_pred EEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchH
Q 011751 32 LIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRR 69 (478)
Q Consensus 32 ~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~ 69 (478)
++|+||+|+|||+++..++..... .+..++++....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~ 37 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEE 37 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCc
Confidence 689999999999988887766543 244555554433
No 247
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.11 E-value=0.003 Score=54.28 Aligned_cols=93 Identities=24% Similarity=0.301 Sum_probs=52.7
Q ss_pred HHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecc
Q 011751 20 KRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDD 99 (478)
Q Consensus 20 ~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~ 99 (478)
+.+...+.+|+.+.|.|++||||||++..+.-.... ....+.+-. .... .....+ ....+++..+
T Consensus 16 ~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~--~~G~i~~~~-~~~~-~~~~~~--------~~~~i~~~~q--- 80 (157)
T cd00267 16 DNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKP--TSGEILIDG-KDIA-KLPLEE--------LRRRIGYVPQ--- 80 (157)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECC-EEcc-cCCHHH--------HHhceEEEee---
Confidence 334445678999999999999999988776543321 122222211 1000 000000 1123444443
Q ss_pred cCChhhhHHHHhhCcCcCCCcceEeeccc
Q 011751 100 RTSTSTRIKEALLDPYLSRYSAIIVDEAH 128 (478)
Q Consensus 100 ~~~~~~~~~~~l~~~~l~~~~~lIiDE~H 128 (478)
.+...+.+..+......+.+++++||.-
T Consensus 81 -lS~G~~~r~~l~~~l~~~~~i~ilDEp~ 108 (157)
T cd00267 81 -LSGGQRQRVALARALLLNPDLLLLDEPT 108 (157)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 4555555555555667779999999964
No 248
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.10 E-value=0.001 Score=64.23 Aligned_cols=67 Identities=22% Similarity=0.217 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCcc--CCCcEEEEecchHHHHHHHHHHHHHHhC
Q 011751 16 ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC--RDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (478)
Q Consensus 16 ~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~--~~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (478)
.+-|.+++.. ....++|.|+.|||||+.+..-+...... .+...++++.+++.++..+..++....+
T Consensus 2 ~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 2 TDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp -HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcC
Confidence 5678888888 77789999999999997665443222111 2345699999999999999998877544
No 249
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=97.10 E-value=0.0032 Score=58.41 Aligned_cols=42 Identities=21% Similarity=0.254 Sum_probs=33.0
Q ss_pred EEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHH
Q 011751 31 ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAA 72 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~ 72 (478)
..+|.||||||||-++..++.-.........|+++.|.+..+
T Consensus 89 I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mI 130 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMI 130 (369)
T ss_pred EEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCC
Confidence 467899999999988877776666555556788988988765
No 250
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.09 E-value=0.002 Score=61.12 Aligned_cols=87 Identities=28% Similarity=0.340 Sum_probs=48.8
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhcCccCC--CcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCChhh
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRD--GKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTST 105 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~--~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 105 (478)
.+++++++||||+||||.+..++.......+ ...++-.-|.+..+.++...+....+..+. + ... ..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~--------~~~-~~ 261 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--V--------ARD-PK 261 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--c--------cCC-HH
Confidence 4568999999999999888777655433211 223334455555555555555554443321 0 011 12
Q ss_pred hHHHHhhCcCcCCCcceEeecc
Q 011751 106 RIKEALLDPYLSRYSAIIVDEA 127 (478)
Q Consensus 106 ~~~~~l~~~~l~~~~~lIiDE~ 127 (478)
.+...+. .+.++++|+||.+
T Consensus 262 ~l~~~l~--~~~~~d~vliDt~ 281 (282)
T TIGR03499 262 ELRKALD--RLRDKDLILIDTA 281 (282)
T ss_pred HHHHHHH--HccCCCEEEEeCC
Confidence 2333332 2356899999975
No 251
>PRK09183 transposase/IS protein; Provisional
Probab=97.09 E-value=0.0043 Score=58.04 Aligned_cols=39 Identities=23% Similarity=0.393 Sum_probs=27.9
Q ss_pred HhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEec
Q 011751 26 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (478)
Q Consensus 26 l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~ 66 (478)
+..+.++++.||+|+|||+++..+...... .+..+.++.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~--~G~~v~~~~ 137 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVR--AGIKVRFTT 137 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEe
Confidence 678899999999999999887766443221 244566654
No 252
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.09 E-value=0.00012 Score=72.06 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHH
Q 011751 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~ 50 (478)
+..+.+...+..|+.+.|+||+||||||++..+.
T Consensus 350 pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lv 383 (580)
T COG4618 350 PILKGISFALQAGEALGIIGPSGSGKSTLARLLV 383 (580)
T ss_pred cceecceeEecCCceEEEECCCCccHHHHHHHHH
Confidence 4667788889999999999999999999987766
No 253
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.08 E-value=0.005 Score=62.22 Aligned_cols=87 Identities=15% Similarity=0.195 Sum_probs=52.1
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcE--EEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCChhh
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKL--IGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTST 105 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~--i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 105 (478)
.|+.++++||||+||||.+..+........++.+ ++-.-+.|..+.++.+.+.+..+..... ......
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~----------~~~~~D 324 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHA----------VKDAAD 324 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeec----------cCCchh
Confidence 4678999999999999888777754433322222 3334555677777777777776643210 000111
Q ss_pred hHHHHhhCcCcCCCcceEeecc
Q 011751 106 RIKEALLDPYLSRYSAIIVDEA 127 (478)
Q Consensus 106 ~~~~~l~~~~l~~~~~lIiDE~ 127 (478)
....+ ..+.+.++++||.+
T Consensus 325 l~~aL---~~L~d~d~VLIDTa 343 (484)
T PRK06995 325 LRLAL---SELRNKHIVLIDTI 343 (484)
T ss_pred HHHHH---HhccCCCeEEeCCC
Confidence 11111 24566789999996
No 254
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.08 E-value=0.00036 Score=62.27 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=33.1
Q ss_pred HHHhhhcCCc----HHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 6 ILQQRKSLPI----ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 6 ~~~~~~~~~~----~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
+.+....++. .+..+.+...+.+|+.+.|+||+||||||++..+.-
T Consensus 6 ~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 6 WKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred EeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3444444542 234455556778999999999999999999987764
No 255
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.07 E-value=0.0003 Score=68.81 Aligned_cols=51 Identities=20% Similarity=0.215 Sum_probs=38.4
Q ss_pred CCchhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
|+++++.+..+.|+-....+.+...+..|+.+.+.||+||||||++..+.-
T Consensus 4 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaG 54 (351)
T PRK11432 4 KNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAG 54 (351)
T ss_pred CcEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHC
Confidence 345556666666654444556667788999999999999999999987763
No 256
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.07 E-value=0.00053 Score=60.41 Aligned_cols=117 Identities=19% Similarity=0.185 Sum_probs=62.4
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEec-chHHHHHHHHHHHHHHhCCcCCCEEEEEEe
Q 011751 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ-PRRVAAVTVAKRVAEESGVELGQRVGYSIR 96 (478)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~-p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~ 96 (478)
..+.+...+.+|+.+.|+||+||||||++..+.-.... ..| .+.+-- +..... +...... ..++|..+
T Consensus 15 ~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G-~i~~~g~~~~~~~-~~~~~~~--------~~i~~~~q 83 (178)
T cd03229 15 VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP-DSG-SILIDGEDLTDLE-DELPPLR--------RRIGMVFQ 83 (178)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-Cce-EEEECCEEccccc-hhHHHHh--------hcEEEEec
Confidence 34445556789999999999999999998777643221 122 233211 000000 0000010 11222221
Q ss_pred eccc-------------CChhhhHHHHhhCcCcCCCcceEeeccc--ccchhhhHHHHHHHHHH
Q 011751 97 FDDR-------------TSTSTRIKEALLDPYLSRYSAIIVDEAH--ERTVHTDVLLGLLKKVQ 145 (478)
Q Consensus 97 ~~~~-------------~~~~~~~~~~l~~~~l~~~~~lIiDE~H--~r~~~~~~~l~~l~~~~ 145 (478)
.... .+...+.+..+....+.+.+++|+||-- ......+.+..+++++.
T Consensus 84 ~~~~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~ 147 (178)
T cd03229 84 DFALFPHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQ 147 (178)
T ss_pred CCccCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 1110 4445555555666778899999999953 23344455556666554
No 257
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.07 E-value=0.0068 Score=56.40 Aligned_cols=82 Identities=21% Similarity=0.069 Sum_probs=53.8
Q ss_pred hhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCC
Q 011751 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ 89 (478)
Q Consensus 10 ~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~ 89 (478)
...+.+++.|--..-.+..|+ ++.-.||=|||..+...+....+. |..+-++.....|+..-++.+...+. .+|.
T Consensus 73 ~~g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~--G~~V~vvT~NdyLA~RD~~~~~~~y~-~LGl 147 (266)
T PF07517_consen 73 TLGLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ--GKGVHVVTSNDYLAKRDAEEMRPFYE-FLGL 147 (266)
T ss_dssp HTS----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT--SS-EEEEESSHHHHHHHHHHHHHHHH-HTT-
T ss_pred HcCCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh--cCCcEEEeccHHHhhccHHHHHHHHH-Hhhh
Confidence 445567777887777787777 889999999996666665544443 55677778888888877777665554 4567
Q ss_pred EEEEEEe
Q 011751 90 RVGYSIR 96 (478)
Q Consensus 90 ~vg~~~~ 96 (478)
.+|+...
T Consensus 148 sv~~~~~ 154 (266)
T PF07517_consen 148 SVGIITS 154 (266)
T ss_dssp -EEEEET
T ss_pred ccccCcc
Confidence 7776543
No 258
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.06 E-value=0.0015 Score=69.11 Aligned_cols=66 Identities=26% Similarity=0.346 Sum_probs=52.8
Q ss_pred CcHHHHHHHHHHHhcC-CEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHH
Q 011751 14 PIASVEKRLVEEVRKN-DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 81 (478)
Q Consensus 14 ~~~~~q~~~~~~l~~~-~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~ 81 (478)
.+...|.+++...... ..++|.||+|+|||+++..++..... .+.+++++.|+..++....+++..
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~--~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVK--RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHH--cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 3567899998888766 78999999999999777666654432 245899999999999999888865
No 259
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.06 E-value=0.0083 Score=59.65 Aligned_cols=177 Identities=14% Similarity=0.072 Sum_probs=112.0
Q ss_pred CceEEEEcCCCChhHHH---hhhCCC----Ce-------EEeCCccccceEEecCCCCcch-------HHHHHHHHHHhh
Q 011751 191 PLKLIIMSASLDARGFS---EYFGCA----KA-------VHVQGRQFPVEILYTLYPEPDY-------LDATLITIFQVH 249 (478)
Q Consensus 191 ~~~~i~lSAT~~~~~~~---~~~~~~----~~-------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 249 (478)
=.|.|++|+..+++.-+ ....+. .. -.+..-..++.+.+...+..+. .+-....++...
T Consensus 215 ~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l 294 (442)
T PF06862_consen 215 YRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQL 294 (442)
T ss_pred eeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHh
Confidence 36899999998776433 222111 11 1112223445555544333221 112223333333
Q ss_pred h-cCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccc--cc
Q 011751 250 L-DEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAE--TS 326 (478)
Q Consensus 250 ~-~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~--~G 326 (478)
. ....+.+|||+||.-+--.+...|.+. ++....+|--.+..+-.++=..|..|+.++|+-|--+- +=
T Consensus 295 ~~~~~~~~~LIfIPSYfDfVRlRN~lk~~---------~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrR 365 (442)
T PF06862_consen 295 KRDSKMSGTLIFIPSYFDFVRLRNYLKKE---------NISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRR 365 (442)
T ss_pred hhccCCCcEEEEecchhhhHHHHHHHHhc---------CCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhh
Confidence 3 556788999999999999999999865 78888888888888888888999999999999996332 23
Q ss_pred cccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCC----CCCCeEEEecCHhhHhc
Q 011751 327 VTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGR----EGPGKCFRLYPENEFDK 391 (478)
Q Consensus 327 vdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR----~~~G~~~~l~~~~~~~~ 391 (478)
..+-+++.||=+|++..+ .-..+++.+.+.... .+...|..||++-+.-.
T Consensus 366 y~irGi~~viFY~~P~~p---------------~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~ 419 (442)
T PF06862_consen 366 YRIRGIRHVIFYGPPENP---------------QFYSELLNMLDESSGGEVDAADATVTVLYSKYDALR 419 (442)
T ss_pred ceecCCcEEEEECCCCCh---------------hHHHHHHhhhcccccccccccCceEEEEecHhHHHH
Confidence 456788899975543333 233445555554433 12578999998765443
No 260
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.05 E-value=0.0031 Score=55.70 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 19 EKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 19 q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+.+...+..|+.+.|+||+||||||++..+.-.
T Consensus 16 l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3444556779999999999999999999777644
No 261
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.04 E-value=0.006 Score=54.06 Aligned_cols=34 Identities=38% Similarity=0.411 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
..+-+...+..+++++++|||||||||++..++.
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3344555678899999999999999998866553
No 262
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.03 E-value=0.0052 Score=53.66 Aligned_cols=36 Identities=33% Similarity=0.419 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
..+.+...+.+|+.+.+.||+||||||++..+.-..
T Consensus 17 ~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 344455667899999999999999999987776543
No 263
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.03 E-value=9.6e-06 Score=71.95 Aligned_cols=138 Identities=18% Similarity=0.190 Sum_probs=83.0
Q ss_pred CchhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHH
Q 011751 2 PRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 81 (478)
Q Consensus 2 ~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~ 81 (478)
+++++.+....|...++.+.+...+..|+.+.+.|++|+||||++..+.-..... ...+.+- .+.+..
T Consensus 2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~--~G~I~~~----------G~dit~ 69 (237)
T COG0410 2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR--SGRIIFD----------GEDITG 69 (237)
T ss_pred CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeeEEEC----------CeecCC
Confidence 4566677777777777888888899999999999999999999986665333221 1222221 111110
Q ss_pred Hh-CCcCCCEEEEEEeecccCChhhhHHHHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccCCCCC
Q 011751 82 ES-GVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNG 158 (478)
Q Consensus 82 ~~-~~~~~~~vg~~~~~~~~~~~~~~~~~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 158 (478)
.. ......-++|..+....++..+..+++.......+- ++.. ..+.+..+.++.++..++++..+.++++
T Consensus 70 ~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~-----~~~~--~~~~e~v~~lFP~Lker~~~~aG~LSGG 140 (237)
T COG0410 70 LPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD-----KEAQ--ERDLEEVYELFPRLKERRNQRAGTLSGG 140 (237)
T ss_pred CCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc-----cccc--cccHHHHHHHChhHHHHhcCcccCCChH
Confidence 00 001123456666666667777776666543222110 1211 1225667888888888887777666665
No 264
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.03 E-value=0.013 Score=55.17 Aligned_cols=90 Identities=20% Similarity=0.321 Sum_probs=47.9
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEe--cchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCChhhhH
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT--QPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRI 107 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~--~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~ 107 (478)
+.++++||+|+||||.+..++.... ..+.++.++ -+.|..+....+.+.+..+.. +...... .......
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~--~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~------~~~~~~~-~dp~~~~ 143 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLK--KQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVD------VIKQKEG-ADPAAVA 143 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeE------EEeCCCC-CCHHHHH
Confidence 5788899999999987766664432 223444443 345666555555555544421 1111111 1111111
Q ss_pred HHHhhCcCcCCCcceEeeccc
Q 011751 108 KEALLDPYLSRYSAIIVDEAH 128 (478)
Q Consensus 108 ~~~l~~~~l~~~~~lIiDE~H 128 (478)
...+......+++++|||=+-
T Consensus 144 ~~~l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 144 FDAIQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHHHHCCCCEEEEeCCC
Confidence 122222234679999999875
No 265
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.02 E-value=0.0036 Score=60.77 Aligned_cols=47 Identities=21% Similarity=0.152 Sum_probs=32.9
Q ss_pred HHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHH
Q 011751 22 LVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVA 71 (478)
Q Consensus 22 ~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l 71 (478)
+...+..+.+++|+|||||||||++..++.... ...+++.+....++
T Consensus 155 l~~~v~~~~nilI~G~tGSGKTTll~aLl~~i~---~~~rivtiEd~~El 201 (344)
T PRK13851 155 LHACVVGRLTMLLCGPTGSGKTTMSKTLISAIP---PQERLITIEDTLEL 201 (344)
T ss_pred HHHHHHcCCeEEEECCCCccHHHHHHHHHcccC---CCCCEEEECCCccc
Confidence 445567889999999999999999866654332 13356666665544
No 266
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.02 E-value=0.0089 Score=59.95 Aligned_cols=88 Identities=31% Similarity=0.342 Sum_probs=46.9
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEE--EEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCChhhhH
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLI--GVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRI 107 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i--~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~ 107 (478)
..++++|++|+||||.+..++..... .+.++ +..-+.|..+.++.+.++...+.++ .+ ..........+
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~--~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~---~~----~~~~~d~~~i~ 166 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKK--KGLKVGLVAADTYRPAAYDQLKQLAEKIGVPF---YG----DPDNKDAVEIA 166 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHH--cCCeEEEecCCCCCHHHHHHHHHHHHHcCCcE---Ee----cCCccCHHHHH
Confidence 46889999999999887766643321 23333 3344445555555555555554331 11 01111122222
Q ss_pred HHHhhCcCcCCCcceEeeccc
Q 011751 108 KEALLDPYLSRYSAIIVDEAH 128 (478)
Q Consensus 108 ~~~l~~~~l~~~~~lIiDE~H 128 (478)
...+.. +...++||||.+-
T Consensus 167 ~~al~~--~~~~DvVIIDTAG 185 (437)
T PRK00771 167 KEGLEK--FKKADVIIVDTAG 185 (437)
T ss_pred HHHHHH--hhcCCEEEEECCC
Confidence 222221 2235899999994
No 267
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=96.97 E-value=0.0013 Score=66.13 Aligned_cols=64 Identities=31% Similarity=0.379 Sum_probs=50.5
Q ss_pred cHHHHHHHHHHHhcC-CEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHH
Q 011751 15 IASVEKRLVEEVRKN-DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVA 80 (478)
Q Consensus 15 ~~~~q~~~~~~l~~~-~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~ 80 (478)
+.+.|++++....+. ...+|.||+|+|||+.+-.++.+.... +++++++.|+..++..+.+++.
T Consensus 186 ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~--~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 186 LNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ--KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc--CCeEEEEcCchHHHHHHHHHhc
Confidence 456888888887777 567889999999996666666555433 5789999999999998888653
No 268
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.96 E-value=0.004 Score=54.70 Aligned_cols=39 Identities=23% Similarity=0.247 Sum_probs=24.3
Q ss_pred HhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEec
Q 011751 26 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (478)
Q Consensus 26 l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~ 66 (478)
+.+++++++.||+|+|||.++..++.+... .+..+.++.
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~--~g~~v~f~~ 82 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIR--KGYSVLFIT 82 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHH--TT--EEEEE
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhcc--CCcceeEee
Confidence 457889999999999999776555543332 355566664
No 269
>PF05729 NACHT: NACHT domain
Probab=96.95 E-value=0.0049 Score=53.16 Aligned_cols=24 Identities=42% Similarity=0.585 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
+.++|+|++|+|||+++..++...
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHH
Confidence 468999999999998887776543
No 270
>PRK06893 DNA replication initiation factor; Validated
Probab=96.94 E-value=0.0049 Score=56.61 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=18.2
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+..+++.||+|+|||.++..+...
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~ 62 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH 62 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 345799999999999777555433
No 271
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=96.94 E-value=0.00045 Score=73.53 Aligned_cols=52 Identities=21% Similarity=0.212 Sum_probs=43.1
Q ss_pred CCchhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
|+++++.+..+.|+-..+-+.+...+..|+.+.|+||+||||||++..+.-.
T Consensus 1 m~~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~ 52 (635)
T PRK11147 1 MSLISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGE 52 (635)
T ss_pred CcEEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 5667778888888766666777778889999999999999999999877643
No 272
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.93 E-value=0.0011 Score=59.57 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=31.5
Q ss_pred hcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 11 ~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+.++-.+.-+.+...+..|+.+.|+||+||||||++..+.-.
T Consensus 8 ~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 8 VSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred EEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 334333344556667889999999999999999998876654
No 273
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.92 E-value=0.0054 Score=57.01 Aligned_cols=120 Identities=11% Similarity=0.056 Sum_probs=60.4
Q ss_pred HhcCCEEEEEcCCCCcHHhHHHHHHhhcCccC-----CCcEEEEecchHH-----HHHHHHHHHHHHhCC------cCCC
Q 011751 26 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-----DGKLIGVTQPRRV-----AAVTVAKRVAEESGV------ELGQ 89 (478)
Q Consensus 26 l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~-----~~~~i~~~~p~~~-----l~~~~~~~~~~~~~~------~~~~ 89 (478)
+..|+.+.|.||+||||||++..+.-...... .+..+.+++.... .+.+........... ..-.
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~ 101 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAK 101 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHH
Confidence 45789999999999999999987764322111 1223333322111 111111100000000 0000
Q ss_pred EEEE---EEeecccCChhhhHHHHhhCcCcCCCcceEeecc--cccchhhhHHHHHHHHHH
Q 011751 90 RVGY---SIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEA--HERTVHTDVLLGLLKKVQ 145 (478)
Q Consensus 90 ~vg~---~~~~~~~~~~~~~~~~~l~~~~l~~~~~lIiDE~--H~r~~~~~~~l~~l~~~~ 145 (478)
.++. ........+...+.+..+...++.+.+++++||. +........+..+++++.
T Consensus 102 ~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 162 (246)
T cd03237 102 PLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFA 162 (246)
T ss_pred HcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 1111 0111223455566666666677889999999995 333334455555555554
No 274
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.92 E-value=0.0043 Score=60.09 Aligned_cols=47 Identities=26% Similarity=0.167 Sum_probs=31.8
Q ss_pred HHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHH
Q 011751 22 LVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVA 71 (478)
Q Consensus 22 ~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l 71 (478)
+..++..+.+++|+|+|||||||++..++.... ...+++.+.-+.++
T Consensus 153 L~~~v~~~~nili~G~tgSGKTTll~aL~~~ip---~~~ri~tiEd~~El 199 (332)
T PRK13900 153 LEHAVISKKNIIISGGTSTGKTTFTNAALREIP---AIERLITVEDAREI 199 (332)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHHHHhhCC---CCCeEEEecCCCcc
Confidence 344566889999999999999999866554332 23456665544443
No 275
>PRK08727 hypothetical protein; Validated
Probab=96.89 E-value=0.01 Score=54.66 Aligned_cols=35 Identities=26% Similarity=0.279 Sum_probs=22.9
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEec
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~ 66 (478)
..+++.||+|+|||.++..+..... . .+..+.++.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~-~-~~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAE-Q-AGRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH-H-cCCcEEEEe
Confidence 4699999999999977755443321 1 234566654
No 276
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.88 E-value=0.0028 Score=59.89 Aligned_cols=86 Identities=24% Similarity=0.244 Sum_probs=47.0
Q ss_pred HHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCCh
Q 011751 24 EEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTST 103 (478)
Q Consensus 24 ~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~ 103 (478)
..+..+.+++++|||||||||++..++..... ...+++++....+... .....+.+... ....+.
T Consensus 122 ~~v~~~~~ili~G~tGSGKTT~l~all~~i~~--~~~~iv~iEd~~E~~l------------~~~~~~~~~~~-~~~~~~ 186 (270)
T PF00437_consen 122 SAVRGRGNILISGPTGSGKTTLLNALLEEIPP--EDERIVTIEDPPELRL------------PGPNQIQIQTR-RDEISY 186 (270)
T ss_dssp HCHHTTEEEEEEESTTSSHHHHHHHHHHHCHT--TTSEEEEEESSS-S--------------SCSSEEEEEEE-TTTBSH
T ss_pred hccccceEEEEECCCccccchHHHHHhhhccc--cccceEEeccccceee------------cccceEEEEee-cCcccH
Confidence 34466889999999999999999777644322 2346666654433321 11122332222 223333
Q ss_pred hhhHHHHhhCcCcCCCcceEeeccc
Q 011751 104 STRIKEALLDPYLSRYSAIIVDEAH 128 (478)
Q Consensus 104 ~~~~~~~l~~~~l~~~~~lIiDE~H 128 (478)
...+.. .+-.+.+.++++|+-
T Consensus 187 ~~~l~~----~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 187 EDLLKS----ALRQDPDVIIIGEIR 207 (270)
T ss_dssp HHHHHH----HTTS--SEEEESCE-
T ss_pred HHHHHH----HhcCCCCcccccccC
Confidence 333333 344568999999995
No 277
>PRK10867 signal recognition particle protein; Provisional
Probab=96.85 E-value=0.016 Score=57.93 Aligned_cols=92 Identities=26% Similarity=0.322 Sum_probs=50.4
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhcCcc-CCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCChhhhHH
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHAGFC-RDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK 108 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~~~~-~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~ 108 (478)
..++++|++||||||.+..++...... .....++-.-+.|..+..+.+.+++..+.++ +. ......+.....
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v-----~~--~~~~~dp~~i~~ 173 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPV-----FP--SGDGQDPVDIAK 173 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeE-----Ee--cCCCCCHHHHHH
Confidence 467889999999998776666543222 1122344456677776656555555444321 11 011112222222
Q ss_pred HHhhCcCcCCCcceEeeccc
Q 011751 109 EALLDPYLSRYSAIIVDEAH 128 (478)
Q Consensus 109 ~~l~~~~l~~~~~lIiDE~H 128 (478)
..+......++++||+|=+=
T Consensus 174 ~a~~~a~~~~~DvVIIDTaG 193 (433)
T PRK10867 174 AALEEAKENGYDVVIVDTAG 193 (433)
T ss_pred HHHHHHHhcCCCEEEEeCCC
Confidence 23322234568999999874
No 278
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=96.83 E-value=0.0013 Score=68.14 Aligned_cols=49 Identities=16% Similarity=0.125 Sum_probs=36.3
Q ss_pred chhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 3 ~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
++++.+..+.|+-..+-+.+...+.+|+.+.|+||+||||||++..+.-
T Consensus 11 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G 59 (510)
T PRK15439 11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAG 59 (510)
T ss_pred eEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3455555666654444556666778999999999999999999977763
No 279
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.79 E-value=0.027 Score=54.42 Aligned_cols=37 Identities=27% Similarity=0.286 Sum_probs=25.2
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEec
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~ 66 (478)
.++++++.||||+|||.++.-++... .. .+..++++.
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l-~~-~g~~V~y~t 218 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKEL-LD-RGKSVIYRT 218 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHH-HH-CCCeEEEEE
Confidence 46899999999999997665444332 22 245666654
No 280
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.79 E-value=0.0028 Score=54.36 Aligned_cols=26 Identities=35% Similarity=0.574 Sum_probs=23.5
Q ss_pred HHhcCCEEEEEcCCCCcHHhHHHHHH
Q 011751 25 EVRKNDILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 25 ~l~~~~~~~i~apTGsGKT~~~~~~~ 50 (478)
.+..|+.+.|.||+||||||++.+++
T Consensus 21 ~v~~ge~vAi~GpSGaGKSTLLnLIA 46 (231)
T COG3840 21 TVPAGEIVAILGPSGAGKSTLLNLIA 46 (231)
T ss_pred eecCCcEEEEECCCCccHHHHHHHHH
Confidence 56789999999999999999998877
No 281
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=96.77 E-value=0.015 Score=53.14 Aligned_cols=28 Identities=36% Similarity=0.495 Sum_probs=24.0
Q ss_pred HHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 25 EVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 25 ~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+.+|+.+.|+||+||||||++..+.-.
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999999999877743
No 282
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=96.76 E-value=0.011 Score=63.72 Aligned_cols=116 Identities=21% Similarity=0.277 Sum_probs=89.8
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCc--cEEEEecccccccccc
Q 011751 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGF--RKVILATNIAETSVTI 329 (478)
Q Consensus 252 ~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~--~~vlvaT~~~~~Gvdi 329 (478)
..+.++|||..-..-.+-+...|... ++.-+-+.|....++|...++.|.... ...|++|-.-..|||+
T Consensus 1274 ~eghRvLIfTQMtkmLDVLeqFLnyH---------gylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNL 1344 (1958)
T KOG0391|consen 1274 SEGHRVLIFTQMTKMLDVLEQFLNYH---------GYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINL 1344 (1958)
T ss_pred hcCceEEehhHHHHHHHHHHHHHhhc---------ceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcccccc
Confidence 45888999988777666667777665 778888899999999999999997664 3568999999999999
Q ss_pred CCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCCCCeEEEecCHhhHhc
Q 011751 330 PGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDK 391 (478)
Q Consensus 330 p~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~ 391 (478)
-+.+.||- ||...+ |.--+...-|.-|.|+...=+.|+|+++...+.
T Consensus 1345 tgADTVvF--------YDsDwN-------PtMDaQAQDrChRIGqtRDVHIYRLISe~TIEe 1391 (1958)
T KOG0391|consen 1345 TGADTVVF--------YDSDWN-------PTMDAQAQDRCHRIGQTRDVHIYRLISERTIEE 1391 (1958)
T ss_pred ccCceEEE--------ecCCCC-------chhhhHHHHHHHhhcCccceEEEEeeccchHHH
Confidence 98888886 886654 333344555666666777788999998765544
No 283
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.75 E-value=0.0052 Score=64.13 Aligned_cols=35 Identities=26% Similarity=0.295 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+-+.+...+.+|+.+.|+||+||||||++..++-.
T Consensus 350 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45556666789999999999999999999877643
No 284
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.74 E-value=0.0077 Score=54.17 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=33.0
Q ss_pred HHhhhcCCc----HHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 7 LQQRKSLPI----ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 7 ~~~~~~~~~----~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+..+.+|. .+..+.+...+.+|+.+.|+||+||||||++..+.-.
T Consensus 7 ~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 7 RNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred EccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhccc
Confidence 344455542 2344555566789999999999999999998776644
No 285
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=96.73 E-value=0.00069 Score=63.48 Aligned_cols=131 Identities=19% Similarity=0.221 Sum_probs=72.7
Q ss_pred CcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcE----EEEecchHHHHHHHHHHHHHHhCC----
Q 011751 14 PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKL----IGVTQPRRVAAVTVAKRVAEESGV---- 85 (478)
Q Consensus 14 ~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~----i~~~~p~~~l~~~~~~~~~~~~~~---- 85 (478)
.-+|..++.+.-...|+-++++|||||||||.+..+.++...+ |.. .+=++-.|.+.. +....+.....
T Consensus 258 kRFpvLNk~LkGhR~GElTvlTGpTGsGKTTFlsEYsLDL~~Q--GVnTLwgSFEi~n~rla~~-mL~Qyagyrl~drl~ 334 (514)
T KOG2373|consen 258 KRFPVLNKYLKGHRPGELTVLTGPTGSGKTTFLSEYSLDLFTQ--GVNTLWGSFEIPNKRLAHW-MLVQYAGYRLLDRLN 334 (514)
T ss_pred hhhhHHHHHhccCCCCceEEEecCCCCCceeEehHhhHHHHhh--hhhheeeeeecchHHHHHH-HHHHHccCchHhhhh
Confidence 3456667777777888999999999999999888777665433 221 222344444332 21111110000
Q ss_pred -------cCCCEEEEEEeecccCChhhhHHHHhhCcCcCCCcceEeecccc----------cchhhhHHHHHHHHHHHh
Q 011751 86 -------ELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEAHE----------RTVHTDVLLGLLKKVQNA 147 (478)
Q Consensus 86 -------~~~~~vg~~~~~~~~~~~~~~~~~~l~~~~l~~~~~lIiDE~H~----------r~~~~~~~l~~l~~~~~~ 147 (478)
.....--|-+.+++...-...+..+.......++.+||||..+- |-...|.+++.+++.+..
T Consensus 335 ~y~HWadrFErlplyfmtfhgqq~~~~vi~~i~ha~yV~di~HViIDNLQFmmg~~~~~~Drf~~QD~iig~fR~fAT~ 413 (514)
T KOG2373|consen 335 SYKHWADRFERLPLYFMTFHGQQFMEKVINEIAHAIYVEDIQHVIIDNLQFMMGQGMMALDRFHLQDRIIGYFRQFATQ 413 (514)
T ss_pred hhhHHHHHHhccchHhhhhcccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHhccchhccchhhhHHHHHHHHHHHhhc
Confidence 00001112233444444444454444445567788999998542 333457777777777654
No 286
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.73 E-value=0.011 Score=54.31 Aligned_cols=25 Identities=24% Similarity=0.507 Sum_probs=20.0
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.++.++++||+|+|||+++..+...
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999888655543
No 287
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.71 E-value=0.00066 Score=57.26 Aligned_cols=53 Identities=21% Similarity=0.166 Sum_probs=41.8
Q ss_pred CCchhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
|+++++.+.+..-.-.++...+...+..|+..+|+||+||||||++.......
T Consensus 1 ~mlle~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 1 SMLLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CcchHHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 44566666666666667778888899999999999999999999887766443
No 288
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.71 E-value=0.014 Score=53.50 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+..+.+...+.+|+.+.|+||+||||||++..+.-.
T Consensus 28 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 355666677889999999999999999999877643
No 289
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.70 E-value=0.0059 Score=58.90 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=21.1
Q ss_pred HHHhcCC--EEEEEcCCCCcHHhHHHHHHh
Q 011751 24 EEVRKND--ILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 24 ~~l~~~~--~~~i~apTGsGKT~~~~~~~~ 51 (478)
..+..++ +.++.||+|+||||++..+..
T Consensus 41 r~v~~~~l~SmIl~GPPG~GKTTlA~liA~ 70 (436)
T COG2256 41 RAVEAGHLHSMILWGPPGTGKTTLARLIAG 70 (436)
T ss_pred HHHhcCCCceeEEECCCCCCHHHHHHHHHH
Confidence 3445443 789999999999999866554
No 290
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.70 E-value=0.0035 Score=60.20 Aligned_cols=50 Identities=18% Similarity=0.162 Sum_probs=34.2
Q ss_pred HHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHH
Q 011751 22 LVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVA 71 (478)
Q Consensus 22 ~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l 71 (478)
+...+..+.+++|+|+|||||||++..++..........+++.+....++
T Consensus 137 L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 137 IRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred HHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCccc
Confidence 45556778899999999999999986655443222234467776655554
No 291
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.67 E-value=0.0093 Score=55.02 Aligned_cols=38 Identities=13% Similarity=0.247 Sum_probs=25.1
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecc
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 67 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p 67 (478)
.+.++++.||+|+|||+++..+...... .+..+.++..
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~--~~~~v~y~~~ 81 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQ--RGRAVGYVPL 81 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEEH
Confidence 3468999999999999887655543221 2445656543
No 292
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.66 E-value=0.0089 Score=54.76 Aligned_cols=26 Identities=35% Similarity=0.441 Sum_probs=21.0
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.+.++++.||+|+|||+++..+....
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999998887665443
No 293
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.66 E-value=0.0021 Score=65.98 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=46.8
Q ss_pred CCchhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
|.++++.+....|+..++-+.+...+..|+.+.++|++|+||||++..+.-..
T Consensus 1 m~~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~ 53 (530)
T COG0488 1 MSMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGEL 53 (530)
T ss_pred CceEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 56777888888999999999999999999999999999999999998877443
No 294
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.64 E-value=0.0074 Score=51.27 Aligned_cols=34 Identities=32% Similarity=0.436 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
+.+.+...+..|+.+.|+||+||||||++....-
T Consensus 25 IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAG 58 (228)
T COG4181 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAG 58 (228)
T ss_pred EeecceEEecCCceEEEEcCCCCcHHhHHHHHhc
Confidence 4445556678999999999999999999877763
No 295
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=96.64 E-value=0.00039 Score=67.69 Aligned_cols=47 Identities=17% Similarity=0.218 Sum_probs=34.3
Q ss_pred HHHhhhcCCc----HHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 6 ILQQRKSLPI----ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 6 ~~~~~~~~~~----~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+.+..+.|+- .+..+.+...+.+|+.+.|+||+||||||++..+...
T Consensus 4 ~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl 54 (343)
T TIGR02314 4 LSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL 54 (343)
T ss_pred EEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3444555531 2345566677889999999999999999999887743
No 296
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.64 E-value=0.031 Score=48.81 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHhHHHHHHhh
Q 011751 31 ILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.++++|++|+||||++..++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4688999999999887666654
No 297
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=96.63 E-value=0.0023 Score=62.79 Aligned_cols=48 Identities=25% Similarity=0.333 Sum_probs=34.4
Q ss_pred hHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 5 ~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
++.+.++.|+-....+.+...+..|+.+.|.||+||||||++..++-.
T Consensus 4 ~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl 51 (353)
T PRK10851 4 EIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGL 51 (353)
T ss_pred EEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344455555443344455556789999999999999999999887743
No 298
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.63 E-value=0.023 Score=59.94 Aligned_cols=35 Identities=23% Similarity=0.276 Sum_probs=24.1
Q ss_pred HHHHHHHHhcCC---EEEEEcCCCCcHHhHHHHHHhhc
Q 011751 19 EKRLVEEVRKND---ILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 19 q~~~~~~l~~~~---~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.+.+...+..++ -++++||.|+||||++..+....
T Consensus 25 v~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaL 62 (830)
T PRK07003 25 VRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKAL 62 (830)
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 334444455553 46899999999998887666543
No 299
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.62 E-value=0.0024 Score=44.78 Aligned_cols=22 Identities=41% Similarity=0.664 Sum_probs=18.2
Q ss_pred CCEEEEEcCCCCcHHhHHHHHH
Q 011751 29 NDILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~ 50 (478)
|+.++|+||+||||||++..+.
T Consensus 23 g~~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999885443
No 300
>PRK08116 hypothetical protein; Validated
Probab=96.60 E-value=0.047 Score=51.33 Aligned_cols=35 Identities=20% Similarity=0.179 Sum_probs=23.0
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEec
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~ 66 (478)
..+++.|++|+|||.++..++... ... +..++++.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l-~~~-~~~v~~~~ 149 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANEL-IEK-GVPVIFVN 149 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH-HHc-CCeEEEEE
Confidence 459999999999997775544332 222 44566654
No 301
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.0081 Score=60.79 Aligned_cols=137 Identities=20% Similarity=0.183 Sum_probs=74.2
Q ss_pred hhcCCcH-HHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCC-----------------CcEEEEec-----
Q 011751 10 RKSLPIA-SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD-----------------GKLIGVTQ----- 66 (478)
Q Consensus 10 ~~~~~~~-~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~-----------------~~~i~~~~----- 66 (478)
...+|-. +.-..+...+..|+.+.++|++||||||++..++-......+ .+.+.+++
T Consensus 327 ~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~l 406 (559)
T COG4988 327 SFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYL 406 (559)
T ss_pred EEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCcc
Confidence 3334433 555667778889999999999999999999877733221000 01111111
Q ss_pred -------------c--hHHHHHHHHHH--HHHHhCCcCCCEEEEEEeecccCChhhhHHHHhhCcCcCCCcceEeec--c
Q 011751 67 -------------P--RRVAAVTVAKR--VAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--A 127 (478)
Q Consensus 67 -------------p--~~~l~~~~~~~--~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~l~~~~l~~~~~lIiDE--~ 127 (478)
| +.+...+..++ +.++...+.|...-. .......+...+.+..+.+.++.+-+++++|| +
T Consensus 407 f~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~i-ge~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA 485 (559)
T COG4988 407 FAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVI-GEGGAGLSGGQAQRLALARALLSPASLLLLDEPTA 485 (559)
T ss_pred ccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchh-ccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCcc
Confidence 1 11111122222 112211111111000 01223457777888888888999999999999 5
Q ss_pred cccchhhhHHHHHHHHHHHh
Q 011751 128 HERTVHTDVLLGLLKKVQNA 147 (478)
Q Consensus 128 H~r~~~~~~~l~~l~~~~~~ 147 (478)
|.....-..++..+.++.+.
T Consensus 486 ~LD~etE~~i~~~l~~l~~~ 505 (559)
T COG4988 486 HLDAETEQIILQALQELAKQ 505 (559)
T ss_pred CCCHhHHHHHHHHHHHHHhC
Confidence 65444444555555555543
No 302
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.58 E-value=0.0037 Score=54.24 Aligned_cols=47 Identities=19% Similarity=0.095 Sum_probs=28.8
Q ss_pred EEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHH
Q 011751 33 IIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVA 80 (478)
Q Consensus 33 ~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~ 80 (478)
+|+|+-|-|||+++..++...... ....++++.|+...+....+...
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~-~~~~I~vtAP~~~~~~~lf~~~~ 47 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK-GKIRILVTAPSPENVQTLFEFAE 47 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS------EEEE-SS--S-HHHHHCC-
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh-cCceEEEecCCHHHHHHHHHHHH
Confidence 589999999999998877655433 23579999999999888777543
No 303
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.58 E-value=0.0012 Score=56.46 Aligned_cols=50 Identities=22% Similarity=0.272 Sum_probs=36.2
Q ss_pred CCchhHHHhhhcCCcHH-----HHHHH----HHHHhcCCEEEEEcCCCCcHHhHHHHHH
Q 011751 1 MPRQKILQQRKSLPIAS-----VEKRL----VEEVRKNDILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 1 ~~~~~~~~~~~~~~~~~-----~q~~~----~~~l~~~~~~~i~apTGsGKT~~~~~~~ 50 (478)
|+++++.+..+.|..+. .|.++ ...+.+++.+.++|.+||||||++..+.
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMla 60 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLA 60 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHh
Confidence 56778888877774321 22233 3445789999999999999999986665
No 304
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=96.58 E-value=0.0011 Score=65.65 Aligned_cols=48 Identities=23% Similarity=0.283 Sum_probs=35.2
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
+++.+.++.++-....+.+...+..|+.+.|.||+||||||++..+.-
T Consensus 20 l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaG 67 (377)
T PRK11607 20 LEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAG 67 (377)
T ss_pred EEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 444555555554334455666678999999999999999999977773
No 305
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.58 E-value=0.00031 Score=65.62 Aligned_cols=52 Identities=29% Similarity=0.328 Sum_probs=41.3
Q ss_pred CCchhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
|+.+++.+..+.++-.+..+.+...+.+|+.+.|+||+||||||++..+.-.
T Consensus 1 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 1 MNKIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred CceEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5566677777777655566677778899999999999999999999776643
No 306
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.56 E-value=0.035 Score=55.62 Aligned_cols=92 Identities=24% Similarity=0.262 Sum_probs=48.8
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhcCccCC-CcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCChhhhHH
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHAGFCRD-GKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK 108 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~~~~~~-~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~ 108 (478)
..++++|++|+||||.+..++.......+ ...++-.-+.|..+.++.+.++...+.++ . . .. ....+.....
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~---~--~-~~-~~~~P~~i~~ 172 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPV---F--A-LG-KGQSPVEIAR 172 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCce---E--e-cC-CCCCHHHHHH
Confidence 36788999999999887776655321112 22334455566666665555555444321 1 0 01 1111212222
Q ss_pred HHhhCcCcCCCcceEeeccc
Q 011751 109 EALLDPYLSRYSAIIVDEAH 128 (478)
Q Consensus 109 ~~l~~~~l~~~~~lIiDE~H 128 (478)
..+......++++||+|=+-
T Consensus 173 ~al~~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 173 RALEYAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHHHHHhcCCCEEEEeCCC
Confidence 22222234568999999874
No 307
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.56 E-value=0.013 Score=51.81 Aligned_cols=43 Identities=26% Similarity=0.416 Sum_probs=33.0
Q ss_pred cCCcHHHHHHHHH----HHhcCCEEEEEcCCCCcHHhHHHHHHhhcC
Q 011751 12 SLPIASVEKRLVE----EVRKNDILIIVGETGSGKTTQLPQFLFHAG 54 (478)
Q Consensus 12 ~~~~~~~q~~~~~----~l~~~~~~~i~apTGsGKT~~~~~~~~~~~ 54 (478)
+++.++.++.++. .+.+|+.+.|.|.+|+||||++..+.-...
T Consensus 11 f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~ 57 (263)
T COG1101 11 FFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK 57 (263)
T ss_pred ecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc
Confidence 4566666666655 467999999999999999999977764443
No 308
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.56 E-value=0.01 Score=56.59 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+..+.+...+..|+.+.|.||+||||||++..+.-.
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl 56 (286)
T PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINAL 56 (286)
T ss_pred CceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 356666677889999999999999999999887743
No 309
>PRK05642 DNA replication initiation factor; Validated
Probab=96.55 E-value=0.02 Score=52.72 Aligned_cols=36 Identities=14% Similarity=0.168 Sum_probs=23.2
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecc
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 67 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p 67 (478)
..++++||+|+|||.++..+.... .. .+..++++..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~-~~-~~~~v~y~~~ 81 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRF-EQ-RGEPAVYLPL 81 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-Hh-CCCcEEEeeH
Confidence 568999999999998765443221 11 2445666653
No 310
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=96.54 E-value=0.018 Score=56.42 Aligned_cols=34 Identities=18% Similarity=0.363 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
..+.+...+..|+.+.|+||+||||||++..+.-
T Consensus 20 il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~G 53 (343)
T PRK11153 20 ALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINL 53 (343)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4445556678999999999999999999987764
No 311
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.53 E-value=0.027 Score=57.18 Aligned_cols=92 Identities=14% Similarity=0.160 Sum_probs=48.9
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCChhhhHHH
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIKE 109 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~ 109 (478)
..+++.|++|+|||.++..+.........+..++++.+.. ........+.... ..+..
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~-f~~~~~~~l~~~~---------------------~~~~~ 199 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDE-FARKAVDILQKTH---------------------KEIEQ 199 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH-HHHHHHHHHHHhh---------------------hHHHH
Confidence 4589999999999977744433221122355677766533 3333333221100 11111
Q ss_pred HhhCcCcCCCcceEeecccccc---hhhhHHHHHHHHHH
Q 011751 110 ALLDPYLSRYSAIIVDEAHERT---VHTDVLLGLLKKVQ 145 (478)
Q Consensus 110 ~l~~~~l~~~~~lIiDE~H~r~---~~~~~~l~~l~~~~ 145 (478)
.. ..+.+++++||||+|... ...+.++.++....
T Consensus 200 ~~--~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~ 236 (450)
T PRK14087 200 FK--NEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFI 236 (450)
T ss_pred HH--HHhccCCEEEEeccccccCCHHHHHHHHHHHHHHH
Confidence 11 123468999999999643 23355555555443
No 312
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.52 E-value=0.021 Score=58.18 Aligned_cols=39 Identities=21% Similarity=0.065 Sum_probs=25.5
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecch
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPR 68 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~ 68 (478)
..+++.||+|+|||.++..+.........+..++++...
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~ 187 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE 187 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 468999999999997775555443222224566666543
No 313
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.52 E-value=0.021 Score=54.02 Aligned_cols=44 Identities=23% Similarity=0.344 Sum_probs=31.9
Q ss_pred HhhhcCCc-HHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 8 QQRKSLPI-ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 8 ~~~~~~~~-~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
+..+.++. .+..+.+...+..|+.+.|+||+||||||++..+.-
T Consensus 6 ~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~G 50 (275)
T PRK13639 6 DLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNG 50 (275)
T ss_pred EEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 33444431 234455666778999999999999999999987763
No 314
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.52 E-value=0.053 Score=50.49 Aligned_cols=53 Identities=19% Similarity=0.160 Sum_probs=33.4
Q ss_pred HHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHH
Q 011751 22 LVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAK 77 (478)
Q Consensus 22 ~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~ 77 (478)
....+..++++++.||+|+|||.++..+..+.. ..+..++++ +...++.+...
T Consensus 98 ~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~--~~g~sv~f~-~~~el~~~Lk~ 150 (254)
T COG1484 98 LVEFFERGENLVLLGPPGVGKTHLAIAIGNELL--KAGISVLFI-TAPDLLSKLKA 150 (254)
T ss_pred HHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEE-EHHHHHHHHHH
Confidence 344556888999999999999976654444433 335556555 34444444433
No 315
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.51 E-value=0.0027 Score=58.55 Aligned_cols=43 Identities=19% Similarity=0.226 Sum_probs=32.2
Q ss_pred hhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 10 ~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
...++..+..+.+...+..|+.+.|.||+||||||++..+.-.
T Consensus 7 ~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~ 49 (232)
T cd03300 7 SKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred EEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3344433455556667789999999999999999999877744
No 316
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.51 E-value=0.0018 Score=58.47 Aligned_cols=36 Identities=36% Similarity=0.466 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+..+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 345566677889999999999999999999877654
No 317
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.50 E-value=0.0053 Score=61.75 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=23.5
Q ss_pred HHHHHhcCC---EEEEEcCCCCcHHhHHHHHHhhc
Q 011751 22 LVEEVRKND---ILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 22 ~~~~l~~~~---~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
+...+..++ .++++||.|+||||++..++...
T Consensus 30 L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~L 64 (484)
T PRK14956 30 LQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRL 64 (484)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 344455555 36999999999999887776543
No 318
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=96.49 E-value=0.0043 Score=63.02 Aligned_cols=66 Identities=20% Similarity=0.355 Sum_probs=53.2
Q ss_pred cHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHH
Q 011751 15 IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 81 (478)
Q Consensus 15 ~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~ 81 (478)
+-.-|..++..++.....+|+||+|+|||.....++++.... ....+++++|+-.++.+.++.+.+
T Consensus 411 LN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~-~~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 411 LNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ-HAGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred hchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh-cCCceEEEcccchhHHHHHHHHHh
Confidence 345799999999999999999999999996555555544333 345799999999999999988754
No 319
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.48 E-value=0.005 Score=59.24 Aligned_cols=92 Identities=18% Similarity=0.232 Sum_probs=51.7
Q ss_pred HHHH-HHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEee
Q 011751 19 EKRL-VEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRF 97 (478)
Q Consensus 19 q~~~-~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~ 97 (478)
|.+. ...+..+++++|+|+|||||||++..++.......+..+++++....++. ......+.+..
T Consensus 137 ~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~------------~~~~~~v~~~~-- 202 (319)
T PRK13894 137 QREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQ------------CAAENYVQYHT-- 202 (319)
T ss_pred HHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccc------------cCCCCEEEEec--
Confidence 4444 44577889999999999999988876664322112234566666555442 11112222211
Q ss_pred cccCChhhhHHHHhhCcCcCCCcceEeeccc
Q 011751 98 DDRTSTSTRIKEALLDPYLSRYSAIIVDEAH 128 (478)
Q Consensus 98 ~~~~~~~~~~~~~l~~~~l~~~~~lIiDE~H 128 (478)
....+... ++...+-.+.+.+|+.|+-
T Consensus 203 ~~~~~~~~----ll~~aLR~~PD~IivGEiR 229 (319)
T PRK13894 203 SIDVNMTA----LLKTTLRMRPDRILVGEVR 229 (319)
T ss_pred CCCCCHHH----HHHHHhcCCCCEEEEeccC
Confidence 11222222 2333334578999999983
No 320
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.47 E-value=0.024 Score=53.22 Aligned_cols=39 Identities=28% Similarity=0.416 Sum_probs=26.6
Q ss_pred CcHHHHHHHHHHHh--cCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 14 PIASVEKRLVEEVR--KNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 14 ~~~~~q~~~~~~l~--~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
...+.|.+.+..+. .+..++|+|||||||||++..++..
T Consensus 63 g~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~ 103 (264)
T cd01129 63 GLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSE 103 (264)
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhh
Confidence 33445555555443 3457999999999999988666543
No 321
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.00088 Score=59.61 Aligned_cols=55 Identities=22% Similarity=0.271 Sum_probs=42.8
Q ss_pred CCchhHHHhhhcCCc-HHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCc
Q 011751 1 MPRQKILQQRKSLPI-ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF 55 (478)
Q Consensus 1 ~~~~~~~~~~~~~~~-~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~ 55 (478)
|.++++.+......- .++.+.+...+..|+..+|.||+||||||+...++-...+
T Consensus 1 m~~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y 56 (251)
T COG0396 1 MMMLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKY 56 (251)
T ss_pred CceeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCc
Confidence 445666666666655 4777888888899999999999999999999887755544
No 322
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.47 E-value=0.0087 Score=58.54 Aligned_cols=25 Identities=36% Similarity=0.688 Sum_probs=20.6
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
..+..++|+|||||||||++..++.
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~ 144 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMID 144 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999998866554
No 323
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=96.47 E-value=0.017 Score=62.42 Aligned_cols=34 Identities=29% Similarity=0.416 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
+.+.+...+.+|+.+.|+|++||||||++..++-
T Consensus 480 vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~g 513 (694)
T TIGR03375 480 ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLG 513 (694)
T ss_pred ceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4556666778999999999999999999977763
No 324
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.0017 Score=64.68 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=37.0
Q ss_pred hHHHhhhcCCcH--HHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 5 KILQQRKSLPIA--SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 5 ~~~~~~~~~~~~--~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
++.+.+..||-. +..+.+...+.+|+.+.|.|+|||||||++.++.-
T Consensus 338 ~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~ 386 (573)
T COG4987 338 ELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAG 386 (573)
T ss_pred eeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHh
Confidence 445556666543 36777888889999999999999999999977763
No 325
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.45 E-value=0.016 Score=53.17 Aligned_cols=52 Identities=21% Similarity=0.216 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchH
Q 011751 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRR 69 (478)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~ 69 (478)
..+.+...+..|..+.+.||+|+||||.+-.+--......+...+.=..|.+
T Consensus 39 AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~ 90 (325)
T COG4586 39 AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR 90 (325)
T ss_pred hhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch
Confidence 3445666678999999999999999998866553333232233343344544
No 326
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.45 E-value=0.00044 Score=64.59 Aligned_cols=52 Identities=27% Similarity=0.332 Sum_probs=40.8
Q ss_pred CCchhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
|+++++.+....++-.+.-+.+...+..|+.+.|+||+||||||++..+.-.
T Consensus 1 m~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 1 MSAIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred CCcEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4556677777777655566677778889999999999999999999776643
No 327
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.45 E-value=0.01 Score=56.95 Aligned_cols=94 Identities=23% Similarity=0.181 Sum_probs=52.9
Q ss_pred HHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecc
Q 011751 20 KRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDD 99 (478)
Q Consensus 20 ~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~ 99 (478)
..++.++..+++++++|+|||||||++..++..-.. ..+++.+.-+.++. ......+....+...
T Consensus 134 ayL~~~ie~~~siii~G~t~sGKTt~lnall~~Ip~---~~rivtIEdt~E~~------------~~~~n~~~l~~r~~~ 198 (312)
T COG0630 134 AYLWLAIEARKSIIICGGTASGKTTLLNALLDFIPP---EERIVTIEDTPELK------------LPHENWVQLVTREGE 198 (312)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHhCCc---hhcEEEEecccccc------------CCCCCEEEEEecCCC
Confidence 348889999999999999999999888666654321 23455543333221 111122222211111
Q ss_pred cCChhhhHHHHhhCcCcCCCcceEeeccc
Q 011751 100 RTSTSTRIKEALLDPYLSRYSAIIVDEAH 128 (478)
Q Consensus 100 ~~~~~~~~~~~l~~~~l~~~~~lIiDE~H 128 (478)
..+.......++....-.+.+++|++|++
T Consensus 199 ~~~~~v~~~dll~aalR~rPd~IivgEvr 227 (312)
T COG0630 199 SGSSEVSLEDLLRAALRQRPDYIIVGELR 227 (312)
T ss_pred CCccccCHHHHHHHHHhcCCCeEEEeeee
Confidence 11111222333333445678999999996
No 328
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.43 E-value=0.012 Score=62.32 Aligned_cols=35 Identities=26% Similarity=0.319 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 19 EKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 19 q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
-+.+...+.+|+.+.|+||+||||||++..++-..
T Consensus 366 L~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 366 AGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34444556799999999999999999998877544
No 329
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=96.42 E-value=0.0015 Score=68.85 Aligned_cols=46 Identities=28% Similarity=0.325 Sum_probs=35.8
Q ss_pred HHhhhcCC-cHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 7 LQQRKSLP-IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 7 ~~~~~~~~-~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+....++ ..+.-+.+...+.+|+.+.++|||||||||++.++..-
T Consensus 332 ~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~ 378 (567)
T COG1132 332 ENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRL 378 (567)
T ss_pred EEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34445555 35667777778999999999999999999999877743
No 330
>PRK06921 hypothetical protein; Provisional
Probab=96.42 E-value=0.038 Score=51.92 Aligned_cols=39 Identities=21% Similarity=0.241 Sum_probs=26.3
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecc
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 67 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p 67 (478)
.+.++++.||+|+|||.++..++.. .....+..++++..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~-l~~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANE-LMRKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH-HhhhcCceEEEEEH
Confidence 4678999999999999777554443 22222455666654
No 331
>PRK12377 putative replication protein; Provisional
Probab=96.40 E-value=0.06 Score=49.85 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEec
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~ 66 (478)
..++++.||+|+|||.++..++.... . .+..++++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~-~-~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLL-A-KGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-H-cCCCeEEEE
Confidence 36899999999999977755554332 2 244455543
No 332
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=96.39 E-value=0.00066 Score=66.56 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=26.0
Q ss_pred HHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 21 RLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 21 ~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+...+..|+.++|.||+||||||++..+.-.
T Consensus 11 ~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl 42 (363)
T TIGR01186 11 DADLAIAKGEIFVIMGLSGSGKSTTVRMLNRL 42 (363)
T ss_pred eeEEEEcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 34445678999999999999999999777743
No 333
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.38 E-value=0.015 Score=53.31 Aligned_cols=39 Identities=13% Similarity=0.301 Sum_probs=28.5
Q ss_pred HhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEec
Q 011751 26 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (478)
Q Consensus 26 l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~ 66 (478)
+..|..+++.|++|||||+++.+++..... ++..++++.
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~--~g~~~~yi~ 59 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQ--NGYSVSYVS 59 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHh--CCCcEEEEe
Confidence 567899999999999999998777765422 234455554
No 334
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.37 E-value=0.02 Score=58.55 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=22.8
Q ss_pred HHHhcCC---EEEEEcCCCCcHHhHHHHHHhhc
Q 011751 24 EEVRKND---ILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 24 ~~l~~~~---~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
..+..++ .++++||.|+||||++..++...
T Consensus 35 ~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~L 67 (507)
T PRK06645 35 YTILNDRLAGGYLLTGIRGVGKTTSARIIAKAV 67 (507)
T ss_pred HHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3355665 68999999999999887776543
No 335
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.37 E-value=0.036 Score=57.70 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCC---EEEEEcCCCCcHHhHHHHHHhhc
Q 011751 18 VEKRLVEEVRKND---ILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 18 ~q~~~~~~l~~~~---~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
+.+.+...+..++ -++++||.|+||||++..+....
T Consensus 24 vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaL 62 (700)
T PRK12323 24 VVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSL 62 (700)
T ss_pred HHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3445555666665 46999999999998887766543
No 336
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.37 E-value=0.00045 Score=64.49 Aligned_cols=51 Identities=27% Similarity=0.262 Sum_probs=39.8
Q ss_pred CCchhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
|+++++.+..+.++-.+..+.+...+.+|+.+.|+||+||||||++..+.-
T Consensus 1 ~~~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14262 1 EPIIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINR 51 (250)
T ss_pred CceEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhc
Confidence 455666667777765455667777889999999999999999999977663
No 337
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.37 E-value=0.0014 Score=58.99 Aligned_cols=32 Identities=31% Similarity=0.420 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHH
Q 011751 19 EKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 19 q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~ 50 (478)
.+.+...+.+|+.+.++|++||||||++..+.
T Consensus 43 L~disf~i~~Ge~vGiiG~NGaGKSTLlklia 74 (249)
T COG1134 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIA 74 (249)
T ss_pred ecCceEEEeCCCEEEEECCCCCcHHHHHHHHh
Confidence 34455556788999999999999999987665
No 338
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.36 E-value=0.057 Score=62.03 Aligned_cols=64 Identities=16% Similarity=0.123 Sum_probs=47.1
Q ss_pred CCcHHHHHHHHHHHhc--CCEEEEEcCCCCcHHhHHHHHHhh--cCccCCCcEEEEecchHHHHHHHH
Q 011751 13 LPIASVEKRLVEEVRK--NDILIIVGETGSGKTTQLPQFLFH--AGFCRDGKLIGVTQPRRVAAVTVA 76 (478)
Q Consensus 13 ~~~~~~q~~~~~~l~~--~~~~~i~apTGsGKT~~~~~~~~~--~~~~~~~~~i~~~~p~~~l~~~~~ 76 (478)
..+.+-|++++..+.. ++.++|+|..|+||||++..++.. ......+..++.+.|+--++....
T Consensus 834 ~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred cccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHH
Confidence 4678899999999884 589999999999999887555432 111223556888899988876553
No 339
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=96.35 E-value=0.00018 Score=64.59 Aligned_cols=47 Identities=26% Similarity=0.338 Sum_probs=39.2
Q ss_pred CchhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHH
Q 011751 2 PRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQ 48 (478)
Q Consensus 2 ~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~ 48 (478)
++++..+..+.|.-....+.+...+..|+.+.++||+|+||||++..
T Consensus 3 ~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNl 49 (250)
T COG0411 3 PLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNL 49 (250)
T ss_pred ceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeee
Confidence 45566777778877777778888899999999999999999999843
No 340
>PLN03073 ABC transporter F family; Provisional
Probab=96.35 E-value=0.0017 Score=69.61 Aligned_cols=48 Identities=19% Similarity=0.097 Sum_probs=36.9
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
+++.+..+.|+-.+..+.+...+..|+.+.++||+||||||++..+.-
T Consensus 178 I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g 225 (718)
T PLN03073 178 IHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAM 225 (718)
T ss_pred EEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence 344555566655555666777788999999999999999999988764
No 341
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.34 E-value=0.075 Score=51.89 Aligned_cols=39 Identities=28% Similarity=0.380 Sum_probs=29.1
Q ss_pred CcHHHHHHHHHHHhcCC--EEEEEcCCCCcHHhHHHHHHhh
Q 011751 14 PIASVEKRLVEEVRKND--ILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 14 ~~~~~q~~~~~~l~~~~--~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+-....+.+...+..++ ++++.||+|+|||+++..+...
T Consensus 19 g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~ 59 (337)
T PRK12402 19 GQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARE 59 (337)
T ss_pred CCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 33445566666677777 8999999999999888766544
No 342
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.33 E-value=0.00041 Score=64.41 Aligned_cols=52 Identities=21% Similarity=0.204 Sum_probs=40.8
Q ss_pred CCchhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
|+++++.+..+.++-.+.-+.+...+..|+.+.|.||+||||||++..+.-.
T Consensus 1 ~~~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 1 MATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred CceEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5556667777777654556667777889999999999999999999777654
No 343
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.33 E-value=0.0038 Score=65.80 Aligned_cols=36 Identities=28% Similarity=0.412 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
++.+.+...+.+|+.+.|+||+||||||++..+.-.
T Consensus 354 ~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~ 389 (574)
T PRK11160 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRA 389 (574)
T ss_pred cceecceEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 355666677889999999999999999999887743
No 344
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.33 E-value=0.03 Score=56.32 Aligned_cols=38 Identities=21% Similarity=0.096 Sum_probs=24.0
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecc
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 67 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p 67 (478)
..+++.||+|+|||.++..+.........+..++++..
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~ 174 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS 174 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH
Confidence 46899999999999777444332221222456667653
No 345
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.32 E-value=0.011 Score=52.97 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=18.6
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.++++.||+|+||||++..+..+.
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~ 74 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANEL 74 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHC
T ss_pred ceEEEECCCccchhHHHHHHHhcc
Confidence 379999999999999886554443
No 346
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.32 E-value=0.0013 Score=57.92 Aligned_cols=48 Identities=19% Similarity=0.211 Sum_probs=39.7
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
+++.+....|.-....+.+...+.+++.+.+.||+||||||++..+-.
T Consensus 8 ~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 8 IEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred eEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHh
Confidence 455666777787778888888899999999999999999999866543
No 347
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=96.32 E-value=0.032 Score=58.47 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
..+.+...+.+|+.+.++||+||||||++..+.-
T Consensus 338 ~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g 371 (547)
T PRK10522 338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTG 371 (547)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4455666678999999999999999999977763
No 348
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.31 E-value=0.019 Score=53.92 Aligned_cols=24 Identities=25% Similarity=0.173 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
+++++.|||||||||++..++-..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~ 135 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARIL 135 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCcc
Confidence 689999999999999998777544
No 349
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.31 E-value=0.021 Score=53.67 Aligned_cols=22 Identities=32% Similarity=0.292 Sum_probs=18.4
Q ss_pred CEEEEEcCCCCcHHhHHHHHHh
Q 011751 30 DILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~ 51 (478)
.++++.||+|+|||+++..+..
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHH
Confidence 4789999999999988866653
No 350
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.29 E-value=0.0073 Score=65.15 Aligned_cols=71 Identities=13% Similarity=0.074 Sum_probs=48.0
Q ss_pred hcCCc-HHHHHHH----HHHHhcCCEEEEEcCCCCcHHhH-HHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHH
Q 011751 11 KSLPI-ASVEKRL----VEEVRKNDILIIVGETGSGKTTQ-LPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 81 (478)
Q Consensus 11 ~~~~~-~~~q~~~----~~~l~~~~~~~i~apTGsGKT~~-~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~ 81 (478)
..|+. ++.|.+. ..++.++++.++.+|||+|||.. +-..+..........++++...|.....|..+.+.+
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 34444 7778765 55667899999999999999932 222222111111235799999999888888887766
No 351
>PRK06620 hypothetical protein; Validated
Probab=96.28 E-value=0.015 Score=52.73 Aligned_cols=20 Identities=35% Similarity=0.381 Sum_probs=16.9
Q ss_pred CEEEEEcCCCCcHHhHHHHH
Q 011751 30 DILIIVGETGSGKTTQLPQF 49 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~ 49 (478)
..+++.||+|||||+++..+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~ 64 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIW 64 (214)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 55899999999999888643
No 352
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.28 E-value=0.016 Score=51.25 Aligned_cols=35 Identities=29% Similarity=0.277 Sum_probs=25.3
Q ss_pred EEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecc
Q 011751 31 ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 67 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p 67 (478)
.++|.||+|+|||++..+++..... .+..++++..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~--~g~~v~~~s~ 35 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLA--RGEPGLYVTL 35 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH--CCCcEEEEEC
Confidence 3689999999999988888776542 2445656543
No 353
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.28 E-value=0.063 Score=48.85 Aligned_cols=37 Identities=27% Similarity=0.258 Sum_probs=23.6
Q ss_pred EEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecc
Q 011751 31 ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 67 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p 67 (478)
.+.|.||+|+|||.++..+........++.+++++..
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~ 72 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA 72 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH
Confidence 6899999999999766444433222223556777753
No 354
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.25 E-value=0.00067 Score=63.31 Aligned_cols=52 Identities=17% Similarity=0.157 Sum_probs=41.1
Q ss_pred CCchhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
|+.+++.+..+.++-.+..+.+...+..|+.+.|.||+||||||++..+.-.
T Consensus 1 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (249)
T PRK14253 1 MNKFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRM 52 (249)
T ss_pred CCeEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5556677777777655566777778889999999999999999998776543
No 355
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.25 E-value=0.032 Score=60.02 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=22.8
Q ss_pred HHHHHhcCC---EEEEEcCCCCcHHhHHHHHHhhc
Q 011751 22 LVEEVRKND---ILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 22 ~~~~l~~~~---~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
+...+..++ -++++||.|+||||++..++...
T Consensus 28 LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~L 62 (944)
T PRK14949 28 LTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGL 62 (944)
T ss_pred HHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 344455543 35899999999999887777543
No 356
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.24 E-value=0.0036 Score=62.58 Aligned_cols=40 Identities=35% Similarity=0.369 Sum_probs=33.4
Q ss_pred cCCcHH-HHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 12 SLPIAS-VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 12 ~~~~~~-~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
.+++.+ +.+.+...+.+|+.+.|+|++||||||++..++.
T Consensus 360 ~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~Llr 400 (591)
T KOG0057|consen 360 SYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLR 400 (591)
T ss_pred EeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHH
Confidence 344444 7888888999999999999999999999988774
No 357
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.24 E-value=0.014 Score=62.63 Aligned_cols=64 Identities=19% Similarity=0.244 Sum_probs=47.3
Q ss_pred hcCCcHHHHHHHHHHHh----c-----CCEEEEEcCCCCcHH--hHHHHHHhhcCccCCCcEEEEecchHHHHHHHHH
Q 011751 11 KSLPIASVEKRLVEEVR----K-----NDILIIVGETGSGKT--TQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAK 77 (478)
Q Consensus 11 ~~~~~~~~q~~~~~~l~----~-----~~~~~i~apTGsGKT--~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~ 77 (478)
..|..++-|.+....+. + ++.++|-||||+||| +++|.+..... .+++++|...|..|..|...
T Consensus 22 ~~~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~---~~k~vVIST~T~~LQeQL~~ 96 (697)
T PRK11747 22 PGFIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA---EKKKLVISTATVALQEQLVS 96 (697)
T ss_pred CCCCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH---cCCeEEEEcCCHHHHHHHHh
Confidence 34667788887555543 4 478999999999999 77776554221 25689999999999888754
No 358
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.23 E-value=0.072 Score=61.99 Aligned_cols=64 Identities=16% Similarity=0.118 Sum_probs=47.5
Q ss_pred cCCcHHHHHHHHHHHhc--CCEEEEEcCCCCcHHhHHHHHHhhc--CccCCCcEEEEecchHHHHHHH
Q 011751 12 SLPIASVEKRLVEEVRK--NDILIIVGETGSGKTTQLPQFLFHA--GFCRDGKLIGVTQPRRVAAVTV 75 (478)
Q Consensus 12 ~~~~~~~q~~~~~~l~~--~~~~~i~apTGsGKT~~~~~~~~~~--~~~~~~~~i~~~~p~~~l~~~~ 75 (478)
...+.+-|++++..+.. ++.++|+|..|+||||++..++... .....+..++.+.|+--++...
T Consensus 965 ~~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 965 MEGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred cCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHH
Confidence 34678899999999886 4799999999999998886655332 1122345688889998887654
No 359
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.22 E-value=0.032 Score=58.60 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCC---EEEEEcCCCCcHHhHHHHHHhh
Q 011751 19 EKRLVEEVRKND---ILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 19 q~~~~~~l~~~~---~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+.+...+..++ .++++||.|+|||+++..+...
T Consensus 25 v~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~ 61 (709)
T PRK08691 25 VKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKS 61 (709)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 344445556664 5799999999999888766654
No 360
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.21 E-value=0.023 Score=57.81 Aligned_cols=31 Identities=29% Similarity=0.471 Sum_probs=22.6
Q ss_pred HHHHHhcCC---EEEEEcCCCCcHHhHHHHHHhh
Q 011751 22 LVEEVRKND---ILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 22 ~~~~l~~~~---~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+...+..++ .++++||+|+||||++..++..
T Consensus 26 L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~ 59 (472)
T PRK14962 26 IINALKKNSISHAYIFAGPRGTGKTTVARILAKS 59 (472)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344455554 3689999999999988777654
No 361
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.19 E-value=0.1 Score=49.47 Aligned_cols=105 Identities=22% Similarity=0.294 Sum_probs=62.1
Q ss_pred EEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEe--cchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCChhhhHH
Q 011751 31 ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT--QPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK 108 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~--~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~ 108 (478)
+++++|-+|+||||.+..++..... ++.++++. -..|+.+.++.+.+.+..+..+ +. ......+....-
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~~--~g~~VllaA~DTFRAaAiEQL~~w~er~gv~v---I~----~~~G~DpAaVaf 211 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLKQ--QGKSVLLAAGDTFRAAAIEQLEVWGERLGVPV---IS----GKEGADPAAVAF 211 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHHH--CCCeEEEEecchHHHHHHHHHHHHHHHhCCeE---Ec----cCCCCCcHHHHH
Confidence 5788999999999888777655432 34455443 3567777777776777666542 11 111112223333
Q ss_pred HHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHH
Q 011751 109 EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQ 145 (478)
Q Consensus 109 ~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~ 145 (478)
.........++++|++|=|- |...-.-|+.-|+++.
T Consensus 212 DAi~~Akar~~DvvliDTAG-RLhnk~nLM~EL~KI~ 247 (340)
T COG0552 212 DAIQAAKARGIDVVLIDTAG-RLHNKKNLMDELKKIV 247 (340)
T ss_pred HHHHHHHHcCCCEEEEeCcc-cccCchhHHHHHHHHH
Confidence 44445567789999999884 2233333444444443
No 362
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=96.18 E-value=0.0021 Score=69.60 Aligned_cols=36 Identities=19% Similarity=0.227 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
++.+.+...+..|+.+.|+||+||||||++..++-.
T Consensus 493 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl 528 (710)
T TIGR03796 493 PLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGL 528 (710)
T ss_pred CcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 456666677889999999999999999999777643
No 363
>PRK05973 replicative DNA helicase; Provisional
Probab=96.15 E-value=0.017 Score=52.84 Aligned_cols=55 Identities=18% Similarity=0.213 Sum_probs=36.6
Q ss_pred HHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHH
Q 011751 22 LVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRV 79 (478)
Q Consensus 22 ~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~ 79 (478)
+.--+..|..++|.|++|+|||++..+++.+.... +..++++. ......+..+++
T Consensus 57 l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~--Ge~vlyfS-lEes~~~i~~R~ 111 (237)
T PRK05973 57 LFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS--GRTGVFFT-LEYTEQDVRDRL 111 (237)
T ss_pred hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEE-EeCCHHHHHHHH
Confidence 44456688899999999999999988888766532 44555543 233334444444
No 364
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.15 E-value=0.0053 Score=65.29 Aligned_cols=34 Identities=38% Similarity=0.530 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHH
Q 011751 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~ 50 (478)
+..+.+.-.+..|+.+.|+|++||||||++..+.
T Consensus 487 ~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~ 520 (709)
T COG2274 487 PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLL 520 (709)
T ss_pred chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHh
Confidence 4667777788999999999999999999998776
No 365
>PRK09087 hypothetical protein; Validated
Probab=96.14 E-value=0.026 Score=51.58 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=17.9
Q ss_pred CCEEEEEcCCCCcHHhHHHHHH
Q 011751 29 NDILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~ 50 (478)
+..++++||+|||||+++..+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~ 65 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWR 65 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3459999999999999886544
No 366
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=96.14 E-value=0.066 Score=53.33 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=24.8
Q ss_pred HHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 22 LVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 22 ~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
+...+..|+.+.|.||+||||||++..+.-
T Consensus 47 isl~i~~Gei~~LvG~NGsGKSTLLr~I~G 76 (400)
T PRK10070 47 ASLAIEEGEIFVIMGLSGSGKSTMVRLLNR 76 (400)
T ss_pred EEEEEcCCCEEEEECCCCchHHHHHHHHHc
Confidence 334467889999999999999999987763
No 367
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.13 E-value=0.033 Score=56.42 Aligned_cols=38 Identities=21% Similarity=0.087 Sum_probs=24.8
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecc
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 67 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p 67 (478)
..+++.||+|+|||.++..+.........+..++++..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 46899999999999777544433222222456777654
No 368
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.13 E-value=0.15 Score=48.94 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=20.3
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.++.+++.||+|+|||+++..++...
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l 180 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANEL 180 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999998776555443
No 369
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=96.11 E-value=0.0048 Score=64.41 Aligned_cols=35 Identities=26% Similarity=0.343 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
+.-+.+...+.+|+.+.|+||+||||||++..+.-
T Consensus 336 ~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g 370 (529)
T TIGR02857 336 PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLG 370 (529)
T ss_pred ccccceeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35566667788999999999999999999988764
No 370
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.08 E-value=0.0075 Score=62.00 Aligned_cols=109 Identities=24% Similarity=0.286 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccC------CCcEEEEecchHHH------HH------------
Q 011751 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR------DGKLIGVTQPRRVA------AV------------ 73 (478)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~------~~~~i~~~~p~~~l------~~------------ 73 (478)
..++....+..|+.++|.||+|||||+++..+.-.=.+.. .+..++++ |.+.- -+
T Consensus 408 ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lfl-pQ~PY~p~GtLre~l~YP~~~~~~~ 486 (604)
T COG4178 408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFL-PQRPYLPQGTLREALCYPNAAPDFS 486 (604)
T ss_pred eeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEe-cCCCCCCCccHHHHHhCCCCCCCCC
Confidence 4455566678999999999999999988866652111110 11123332 22110 00
Q ss_pred --HHHHHHHHHhCC-cCCCEEEEEEeecccCChhhhHHHHhhCcCcCCCcceEeeccc
Q 011751 74 --TVAKRVAEESGV-ELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEAH 128 (478)
Q Consensus 74 --~~~~~~~~~~~~-~~~~~vg~~~~~~~~~~~~~~~~~~l~~~~l~~~~~lIiDE~H 128 (478)
+..+-+.+ .+. .......-..+++...+..++.+..+.+..+.+.+++|+|||=
T Consensus 487 d~~l~~vL~~-vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEAT 543 (604)
T COG4178 487 DAELVAVLHK-VGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEAT 543 (604)
T ss_pred hHHHHHHHHH-cCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecch
Confidence 01110000 000 0000011122355666777777777777788999999999983
No 371
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.07 E-value=0.024 Score=59.95 Aligned_cols=36 Identities=25% Similarity=0.295 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
++-+.+...+.+|+.++|+|++||||||++..++-.
T Consensus 349 ~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl 384 (588)
T PRK13657 349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRV 384 (588)
T ss_pred ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 345556666779999999999999999999877743
No 372
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.07 E-value=0.0049 Score=56.55 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=21.4
Q ss_pred HHhcCCEEEEEcCCCCcHHhHHHHHH
Q 011751 25 EVRKNDILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 25 ~l~~~~~~~i~apTGsGKT~~~~~~~ 50 (478)
.+.....+.+.|++|||||+++..+.
T Consensus 20 ~~p~~GvTAlFG~SGsGKTslin~Ia 45 (352)
T COG4148 20 TLPARGITALFGPSGSGKTSLINMIA 45 (352)
T ss_pred cCCCCceEEEecCCCCChhhHHHHHh
Confidence 34455789999999999999997765
No 373
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.06 E-value=0.00064 Score=62.94 Aligned_cols=51 Identities=16% Similarity=0.190 Sum_probs=38.9
Q ss_pred CchhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 2 PRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 2 ~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+++++.+..+.++-.+..+.+...+.+|+.+.|+||+||||||++..+.-.
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (237)
T PRK11614 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGD 54 (237)
T ss_pred cEEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 445556666666655566667778899999999999999999998766543
No 374
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=96.06 E-value=0.039 Score=49.79 Aligned_cols=90 Identities=18% Similarity=0.347 Sum_probs=58.6
Q ss_pred HHHhhhcCCcHHHHHHHHHHHhc---CCEEEEEcCCCCcHHhHH-HHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHH
Q 011751 6 ILQQRKSLPIASVEKRLVEEVRK---NDILIIVGETGSGKTTQL-PQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 81 (478)
Q Consensus 6 ~~~~~~~~~~~~~q~~~~~~l~~---~~~~~i~apTGsGKT~~~-~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~ 81 (478)
+++....+-+++.|.++...+.+ |++.+.+.-.|.|||+++ |..++.. ..+...+.++.|.. +..+....+..
T Consensus 15 l~E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~L--Adg~~LvrviVpk~-Ll~q~~~~L~~ 91 (229)
T PF12340_consen 15 LFEIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALAL--ADGSRLVRVIVPKA-LLEQMRQMLRS 91 (229)
T ss_pred HHHHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHH--cCCCcEEEEEcCHH-HHHHHHHHHHH
Confidence 45556677789999999888875 578999999999999664 4444432 22344566666655 66666666666
Q ss_pred HhCCcCCCEEEEEEeecc
Q 011751 82 ESGVELGQRVGYSIRFDD 99 (478)
Q Consensus 82 ~~~~~~~~~vg~~~~~~~ 99 (478)
.++.-++..+ |...++.
T Consensus 92 ~lg~l~~r~i-~~lpFsR 108 (229)
T PF12340_consen 92 RLGGLLNRRI-YHLPFSR 108 (229)
T ss_pred HHHHHhCCee-EEecccC
Confidence 6654444444 3444443
No 375
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=96.05 E-value=0.003 Score=66.24 Aligned_cols=143 Identities=12% Similarity=0.010 Sum_probs=0.0
Q ss_pred CchhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCc------EEEEecchHH-----
Q 011751 2 PRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGK------LIGVTQPRRV----- 70 (478)
Q Consensus 2 ~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~------~i~~~~p~~~----- 70 (478)
+++++.+..+.++-.++.+.+...+..|+.+.|.||+||||||++..+.-......+.. .+.+++....
T Consensus 321 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~ 400 (552)
T TIGR03719 321 KVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPN 400 (552)
T ss_pred eEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCC
Q ss_pred -HHHHHH------------HHHHHHhCCcCCCEEEEEEeecccCChhhhHHHHhhCcCcCCCcceEeec--ccccchhhh
Q 011751 71 -AAVTVA------------KRVAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTD 135 (478)
Q Consensus 71 -l~~~~~------------~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~l~~~~l~~~~~lIiDE--~H~r~~~~~ 135 (478)
.+.+.. .......-..++..-..........+...+.+..+....+.+.+++++|| .|......+
T Consensus 401 ~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~ 480 (552)
T TIGR03719 401 KTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLR 480 (552)
T ss_pred CcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q ss_pred HHHHHHHHH
Q 011751 136 VLLGLLKKV 144 (478)
Q Consensus 136 ~~l~~l~~~ 144 (478)
.+..+++++
T Consensus 481 ~l~~~l~~~ 489 (552)
T TIGR03719 481 ALEEALLEF 489 (552)
T ss_pred HHHHHHHHC
No 376
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.04 E-value=0.035 Score=57.91 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=24.4
Q ss_pred HHHHHHHHhcCC---EEEEEcCCCCcHHhHHHHHHhh
Q 011751 19 EKRLVEEVRKND---ILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 19 q~~~~~~l~~~~---~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+.+...+..++ .++++||.|+|||+++..++..
T Consensus 24 v~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~ 60 (702)
T PRK14960 24 SRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKC 60 (702)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344455566664 5699999999999888766644
No 377
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.03 E-value=0.00084 Score=62.81 Aligned_cols=51 Identities=22% Similarity=0.246 Sum_probs=39.0
Q ss_pred CchhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 2 PRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 2 ~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+++++.+..+.|+-.+..+.+...+..|+.+.|+||+||||||++..+.-.
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 3 FAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred ceEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 344556666666655566677777889999999999999999999776644
No 378
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.03 E-value=0.031 Score=57.47 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=23.7
Q ss_pred HHHHHHHHhcCC---EEEEEcCCCCcHHhHHHHHHhh
Q 011751 19 EKRLVEEVRKND---ILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 19 q~~~~~~l~~~~---~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+.+...+..++ -++++||.|+|||+++..++..
T Consensus 25 ~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~ 61 (509)
T PRK14958 25 VRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKC 61 (509)
T ss_pred HHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHH
Confidence 344445555543 4689999999999888766643
No 379
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=96.02 E-value=0.00083 Score=63.39 Aligned_cols=52 Identities=13% Similarity=0.210 Sum_probs=40.3
Q ss_pred CCchhHHHhhhcCCc---------HHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 1 MPRQKILQQRKSLPI---------ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 1 ~~~~~~~~~~~~~~~---------~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
|+++++.+..+.++. .+.-+.+...+.+|+.+.|+||+||||||++..+.-.
T Consensus 1 ~~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 61 (268)
T PRK10419 1 MTLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGL 61 (268)
T ss_pred CceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 566677777777752 3455667777889999999999999999999776643
No 380
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=96.02 E-value=0.052 Score=55.87 Aligned_cols=115 Identities=18% Similarity=0.234 Sum_probs=87.9
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCcc-EEEEeccccccccccC
Q 011751 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFR-KVILATNIAETSVTIP 330 (478)
Q Consensus 252 ~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~-~vlvaT~~~~~Gvdip 330 (478)
..+..+|+|..-.+-++-+.++|..+ ++.-.-+.|+....+|..+...|....+ -.|++|-.-..|||+-
T Consensus 1042 aegHRvL~yfQMTkM~dl~EdYl~yr---------~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLT 1112 (1185)
T KOG0388|consen 1042 AEGHRVLMYFQMTKMIDLIEDYLVYR---------GYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLT 1112 (1185)
T ss_pred cCCceEEehhHHHHHHHHHHHHHHhh---------ccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCccccccc
Confidence 34788999999888888888888876 8888899999999999999999986544 5689999999999999
Q ss_pred CeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCCCCeEEEecCHhhHh
Q 011751 331 GIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFD 390 (478)
Q Consensus 331 ~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~ 390 (478)
+.+.||- ||...+ |.--.+.+-|+-|-|....=.+|+|++....+
T Consensus 1113 AADTViF--------YdSDWN-------PT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvE 1157 (1185)
T KOG0388|consen 1113 AADTVIF--------YDSDWN-------PTADQQAMDRAHRLGQTRDVTVYRLITRGTVE 1157 (1185)
T ss_pred ccceEEE--------ecCCCC-------cchhhHHHHHHHhccCccceeeeeecccccHH
Confidence 9999996 876554 22223344444444444466799999776544
No 381
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.01 E-value=0.076 Score=50.10 Aligned_cols=44 Identities=30% Similarity=0.477 Sum_probs=31.5
Q ss_pred HHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEec
Q 011751 22 LVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (478)
Q Consensus 22 ~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~ 66 (478)
++--+..|+.++|.|++|+|||+++.+++...... .+..++++.
T Consensus 23 ~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~-~g~~vl~iS 66 (271)
T cd01122 23 LTKGLRKGELIILTAGTGVGKTTFLREYALDLITQ-HGVRVGTIS 66 (271)
T ss_pred eeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh-cCceEEEEE
Confidence 33456788999999999999999888887665432 134555554
No 382
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.00 E-value=0.023 Score=58.62 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=24.3
Q ss_pred HHHHHHHhcCC---EEEEEcCCCCcHHhHHHHHHhh
Q 011751 20 KRLVEEVRKND---ILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 20 ~~~~~~l~~~~---~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+.+...+..++ .++++||.|+||||++..++..
T Consensus 26 ~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~ 61 (546)
T PRK14957 26 NSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKC 61 (546)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34555666654 3789999999999888777643
No 383
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=95.99 E-value=0.039 Score=47.61 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=20.4
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
+++..+|+||+|||||+++....+..
T Consensus 20 ~~~~~~i~G~NgsGKS~~l~~i~~~~ 45 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999998886655443
No 384
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.99 E-value=0.02 Score=54.43 Aligned_cols=55 Identities=18% Similarity=0.151 Sum_probs=37.7
Q ss_pred cHHHHHHHHHHH-hcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHH
Q 011751 15 IASVEKRLVEEV-RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAA 72 (478)
Q Consensus 15 ~~~~q~~~~~~l-~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~ 72 (478)
+.+-+.+++..+ ....+++++|.|||||||++..+...-.. ..+++++.-+.++.
T Consensus 158 ~~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~---~eRvItiEDtaELq 213 (355)
T COG4962 158 MIRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFIDS---DERVITIEDTAELQ 213 (355)
T ss_pred cCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCC---cccEEEEeehhhhc
Confidence 344455555544 44459999999999999999777654432 33788887766663
No 385
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.99 E-value=0.0025 Score=59.23 Aligned_cols=48 Identities=17% Similarity=0.309 Sum_probs=41.5
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
+++.+.++.|+-.+.-..+...|.+|+.+.+.||+||||||++..++-
T Consensus 3 i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAG 50 (345)
T COG1118 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAG 50 (345)
T ss_pred eeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhC
Confidence 567778888888877778888999999999999999999999987763
No 386
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.97 E-value=0.028 Score=59.02 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=25.0
Q ss_pred HHHHHHHHhcCCE---EEEEcCCCCcHHhHHHHHHhh
Q 011751 19 EKRLVEEVRKNDI---LIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 19 q~~~~~~l~~~~~---~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+.+...+..|+. ++++||.|+||||++..++..
T Consensus 25 v~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~ 61 (647)
T PRK07994 25 LTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKG 61 (647)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4445555666664 689999999999888776643
No 387
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.96 E-value=0.017 Score=57.78 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.+++|.||+|+|||+++..++.+.
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 679999999999998887776543
No 388
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.96 E-value=0.0011 Score=60.93 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=37.3
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+++.+..+.++-.+..+.+...+.+|+.+.|+||+||||||++..+.-.
T Consensus 8 i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 8 LQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred EEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4455566666544566667777889999999999999999999776543
No 389
>PHA02533 17 large terminase protein; Provisional
Probab=95.96 E-value=0.043 Score=56.70 Aligned_cols=71 Identities=21% Similarity=0.246 Sum_probs=55.9
Q ss_pred hcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHH
Q 011751 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 81 (478)
Q Consensus 11 ~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~ 81 (478)
..+++.++|+.++..+..++..++.-+=..|||+++..+++......++..++++.|++..+..+.+++..
T Consensus 56 ~Pf~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~ 126 (534)
T PHA02533 56 IKVQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQ 126 (534)
T ss_pred eecCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 45788999999999987778888889999999988775554333334466899999999999888877654
No 390
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=95.94 E-value=0.00067 Score=58.95 Aligned_cols=46 Identities=28% Similarity=0.333 Sum_probs=40.4
Q ss_pred CCchhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHH
Q 011751 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQL 46 (478)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~ 46 (478)
|+.+...+..+.|.-+++.+.+...+.+|+.+.+-||+|+||||.+
T Consensus 2 ~~~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~F 47 (243)
T COG1137 2 MSTLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTF 47 (243)
T ss_pred CcEEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEE
Confidence 4456667788888888899999999999999999999999999887
No 391
>COG3910 Predicted ATPase [General function prediction only]
Probab=95.92 E-value=0.087 Score=45.66 Aligned_cols=28 Identities=43% Similarity=0.636 Sum_probs=23.7
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhcCc
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHAGF 55 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~~~ 55 (478)
.-..++++|.+||||||++.-+.....+
T Consensus 36 ~apIT~i~GENGsGKSTLLEaiA~~~~~ 63 (233)
T COG3910 36 RAPITFITGENGSGKSTLLEAIAAGMGF 63 (233)
T ss_pred cCceEEEEcCCCccHHHHHHHHHhhccc
Confidence 4568999999999999999888876654
No 392
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=95.92 E-value=0.019 Score=61.17 Aligned_cols=63 Identities=19% Similarity=0.263 Sum_probs=46.5
Q ss_pred HHHHHHH-HHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHH
Q 011751 17 SVEKRLV-EEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 81 (478)
Q Consensus 17 ~~q~~~~-~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~ 81 (478)
.-|++++ ..+......+|.|=+|+||||.+..++...... +++|+++.-|..++..+..++..
T Consensus 672 ~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~--gkkVLLtsyThsAVDNILiKL~~ 735 (1100)
T KOG1805|consen 672 NDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVAL--GKKVLLTSYTHSAVDNILIKLKG 735 (1100)
T ss_pred HHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHc--CCeEEEEehhhHHHHHHHHHHhc
Confidence 3455554 455666678999999999998887766544332 67899999999999888776643
No 393
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.91 E-value=0.061 Score=48.95 Aligned_cols=114 Identities=22% Similarity=0.224 Sum_probs=56.5
Q ss_pred HHHHHHHHhcCC-EEEEEcCCCCcHHhHHHHHHhhcCccCCCcEE-EEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEe
Q 011751 19 EKRLVEEVRKND-ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLI-GVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIR 96 (478)
Q Consensus 19 q~~~~~~l~~~~-~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i-~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~ 96 (478)
-..+-..+..++ .+.++|+-|||||+... ++..... .+...+ ++-.|+-..+. ....+......+...
T Consensus 40 l~~l~~~i~d~qg~~~vtGevGsGKTv~~R-al~~s~~-~d~~~~v~i~~~~~s~~~-~~~ai~~~l~~~p~~------- 109 (269)
T COG3267 40 LLMLHAAIADGQGILAVTGEVGSGKTVLRR-ALLASLN-EDQVAVVVIDKPTLSDAT-LLEAIVADLESQPKV------- 109 (269)
T ss_pred HHHHHHHHhcCCceEEEEecCCCchhHHHH-HHHHhcC-CCceEEEEecCcchhHHH-HHHHHHHHhccCccc-------
Confidence 334555667777 89999999999998877 4333322 222233 33344444333 333333322222111
Q ss_pred ecccCChhhhHHHHhhC--cCcCCCcceEeecccccchhhhHHHHHHHHH
Q 011751 97 FDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKV 144 (478)
Q Consensus 97 ~~~~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~ 144 (478)
.... ....+.+.+.. ...++.-.+++||+|.-..+..-.+.++-..
T Consensus 110 -~~~~-~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl 157 (269)
T COG3267 110 -NVNA-VLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNL 157 (269)
T ss_pred -hhHH-HHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhh
Confidence 0010 11111111111 1233346788999997666665555555443
No 394
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=95.90 E-value=0.0031 Score=67.13 Aligned_cols=143 Identities=13% Similarity=0.054 Sum_probs=0.0
Q ss_pred CchhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEE--------------EEecc
Q 011751 2 PRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLI--------------GVTQP 67 (478)
Q Consensus 2 ~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i--------------~~~~p 67 (478)
+++++.+..+.|+-..+.+.+...+..|+.+.|+||+||||||++..++-......+...+ ..+.+
T Consensus 311 ~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~ 390 (638)
T PRK10636 311 PLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRA 390 (638)
T ss_pred ceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCc
Q ss_pred hHHHHHHHH-------HHHHHHhCCcCCCEEEEEEeecccCChhhhHHHHhhCcCcCCCcceEeec--ccccchhhhHHH
Q 011751 68 RRVAAVTVA-------KRVAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLL 138 (478)
Q Consensus 68 ~~~l~~~~~-------~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~l~~~~l~~~~~lIiDE--~H~r~~~~~~~l 138 (478)
......... ..-....-..++..-..........+...+.+..+....+.+.+++|+|| .|......+.+.
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~ 470 (638)
T PRK10636 391 DESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALT 470 (638)
T ss_pred cchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH
Q ss_pred HHHHHH
Q 011751 139 GLLKKV 144 (478)
Q Consensus 139 ~~l~~~ 144 (478)
.+++++
T Consensus 471 ~~L~~~ 476 (638)
T PRK10636 471 EALIDF 476 (638)
T ss_pred HHHHHc
No 395
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.88 E-value=0.001 Score=62.19 Aligned_cols=49 Identities=16% Similarity=0.133 Sum_probs=37.1
Q ss_pred chhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 3 ~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
.+++.+..+.|+-.+.-+.+...+..|+.+.|+||+||||||++..+.-
T Consensus 6 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14242 6 KMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNR 54 (253)
T ss_pred EEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3455556666654445566667788999999999999999999977764
No 396
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=95.86 E-value=0.017 Score=58.21 Aligned_cols=30 Identities=37% Similarity=0.464 Sum_probs=25.1
Q ss_pred HHHHHHhcCCEEEEEcCCCCcHHhHHHHHH
Q 011751 21 RLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 21 ~~~~~l~~~~~~~i~apTGsGKT~~~~~~~ 50 (478)
.+...+.+|++++|+||||||||.++..+.
T Consensus 453 ~Ls~~V~~g~~LLItG~sG~GKtSLlRvlg 482 (659)
T KOG0060|consen 453 NLSLEVPSGQNLLITGPSGCGKTSLLRVLG 482 (659)
T ss_pred eeeeEecCCCeEEEECCCCCchhHHHHHHh
Confidence 355567899999999999999998876655
No 397
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.85 E-value=0.0014 Score=59.64 Aligned_cols=44 Identities=25% Similarity=0.265 Sum_probs=32.9
Q ss_pred HhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 8 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 8 ~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
+..+.|+-.++.+.+...+.+|+.+.|+||+||||||++..+.-
T Consensus 5 ~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (213)
T cd03259 5 GLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAG 48 (213)
T ss_pred eeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 33444443445566667788999999999999999999877653
No 398
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=95.85 E-value=0.021 Score=63.56 Aligned_cols=107 Identities=22% Similarity=0.313 Sum_probs=87.2
Q ss_pred CEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCC--ccEEEEeccccccccccCCeE
Q 011751 256 DILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG--FRKVILATNIAETSVTIPGIK 333 (478)
Q Consensus 256 ~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g--~~~vlvaT~~~~~Gvdip~v~ 333 (478)
++++|.+-.....-+...+... ++....++|+++...|..+++.|.++ ..-.+++|.....|+|+-..+
T Consensus 713 kvlifsq~t~~l~il~~~l~~~---------~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~ 783 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKAL---------GIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGAD 783 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhc---------CCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccc
Confidence 8999999999888888888875 56788899999999999999999875 456678888999999999999
Q ss_pred EEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC---CCeEEEecCHhhH
Q 011751 334 YVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPENEF 389 (478)
Q Consensus 334 ~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~ 389 (478)
.||. ||+ |...+...|...||.|.| +=.+|++..++..
T Consensus 784 ~vi~--------~d~----------~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~ti 824 (866)
T COG0553 784 TVIL--------FDP----------WWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTI 824 (866)
T ss_pred eEEE--------ecc----------ccChHHHHHHHHHHHHhcCcceeEEEEeecCCcH
Confidence 9998 884 455666666666666655 5568888876653
No 399
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=95.85 E-value=0.029 Score=60.07 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
..+.+...+.+|+.+.|+||+||||||++..+.-.
T Consensus 467 il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl 501 (659)
T TIGR00954 467 LIESLSFEVPSGNHLLICGPNGCGKSSLFRILGEL 501 (659)
T ss_pred eeecceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44455556679999999999999999999776643
No 400
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.85 E-value=0.045 Score=55.14 Aligned_cols=21 Identities=33% Similarity=0.371 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHhHHHHHHh
Q 011751 31 ILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~ 51 (478)
++++.||+|+|||+++..+..
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~ 58 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAG 58 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 789999999999988866654
No 401
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.85 E-value=0.0013 Score=60.74 Aligned_cols=47 Identities=23% Similarity=0.251 Sum_probs=34.8
Q ss_pred HHHhhhcCCcH----HHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 6 ILQQRKSLPIA----SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 6 ~~~~~~~~~~~----~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+.+..+.++-. ++.+.+...+..|+.+.|+||+||||||++..+.-.
T Consensus 4 ~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 4 LKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred EecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34444555433 455666777889999999999999999998776643
No 402
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.85 E-value=0.02 Score=53.66 Aligned_cols=38 Identities=18% Similarity=0.269 Sum_probs=28.4
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEec
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~ 66 (478)
..|..++|.|++|+|||++..+++.+.... +..++++.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEE
Confidence 467899999999999999998888765432 33444444
No 403
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.83 E-value=0.068 Score=54.60 Aligned_cols=34 Identities=29% Similarity=0.279 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 19 EKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 19 q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+.+...+..|+.+.|+||+||||||++..++-.
T Consensus 40 L~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred EeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3445556779999999999999999999877644
No 404
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.83 E-value=0.0017 Score=60.40 Aligned_cols=46 Identities=22% Similarity=0.304 Sum_probs=34.6
Q ss_pred HHHhhhcCC-cHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 6 ILQQRKSLP-IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 6 ~~~~~~~~~-~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
+.+....++ -.++.+.+...+.+|+.+.|+||+||||||++..+.-
T Consensus 4 ~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 50 (243)
T TIGR02315 4 VENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINR 50 (243)
T ss_pred EEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 344455554 3445666777888999999999999999999876653
No 405
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.82 E-value=0.00078 Score=60.91 Aligned_cols=49 Identities=20% Similarity=0.064 Sum_probs=36.4
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+++.+..+.|+-....+.+...+.+|+.+.|+||+||||||++..+.-.
T Consensus 3 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 3 LEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred EEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4455555566544445566667789999999999999999998776654
No 406
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.81 E-value=0.093 Score=55.31 Aligned_cols=34 Identities=29% Similarity=0.337 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
.-+.+...+.+|+.+.|+||+||||||++..+.-
T Consensus 330 ~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g 363 (569)
T PRK10789 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQR 363 (569)
T ss_pred cccCeeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4455556778999999999999999999977764
No 407
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.81 E-value=0.0019 Score=53.47 Aligned_cols=43 Identities=23% Similarity=0.393 Sum_probs=32.1
Q ss_pred HhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHH
Q 011751 8 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 8 ~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~ 50 (478)
+....+|-.-...++...+.+|+.+-+.||+||||||++..++
T Consensus 7 nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~ 49 (213)
T COG4136 7 NVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMI 49 (213)
T ss_pred eeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHH
Confidence 3333444444445556678899999999999999999998877
No 408
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=95.81 E-value=0.0012 Score=61.58 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=36.8
Q ss_pred chhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 3 ~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
.+++.+..+.++-.+..+.+...+..|+.+.|+||+||||||++..+.-
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNR 51 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3445555566654455566677788999999999999999999877664
No 409
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.80 E-value=0.0017 Score=59.02 Aligned_cols=43 Identities=33% Similarity=0.342 Sum_probs=32.3
Q ss_pred hhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 9 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 9 ~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
..+.|+-.+..+.+...+.+|+.+.|+||+||||||++..+.-
T Consensus 5 l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 47 (213)
T cd03235 5 LTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILG 47 (213)
T ss_pred ceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 3444443345566667788999999999999999999977654
No 410
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=95.80 E-value=0.051 Score=49.69 Aligned_cols=36 Identities=28% Similarity=0.458 Sum_probs=27.1
Q ss_pred HHHHHHHHHhc--CCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 18 VEKRLVEEVRK--NDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 18 ~q~~~~~~l~~--~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
-.+++...+.. ++.++|.||.|+|||+++..++...
T Consensus 7 el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 7 ELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp HHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 34555555655 4789999999999999887776554
No 411
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.79 E-value=0.0016 Score=58.71 Aligned_cols=44 Identities=20% Similarity=0.221 Sum_probs=31.9
Q ss_pred hhhcCCc-HHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 9 QRKSLPI-ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 9 ~~~~~~~-~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
..+.++- .+..+.+...+..|+.+.|+||+||||||++..+.-.
T Consensus 5 l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 5 ISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3344443 3344555566789999999999999999999776543
No 412
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.78 E-value=0.11 Score=51.35 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=22.9
Q ss_pred HHHHHHhcCC---EEEEEcCCCCcHHhHHHHHHhh
Q 011751 21 RLVEEVRKND---ILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 21 ~~~~~l~~~~---~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+...+..++ .+++.||.|+||||++..++..
T Consensus 27 ~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~ 61 (363)
T PRK14961 27 AISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKS 61 (363)
T ss_pred HHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHH
Confidence 3444455554 3689999999999988777644
No 413
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.78 E-value=0.0013 Score=59.74 Aligned_cols=49 Identities=24% Similarity=0.144 Sum_probs=37.4
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+++.+..+.++-.+..+.+...+.+|+.+.|+||+||||||++..+.-.
T Consensus 12 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 12 LAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred EEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3455556666554566677777889999999999999999999777644
No 414
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=95.78 E-value=0.035 Score=58.73 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
++.+.+...+.+|+.++|+|++||||||++..++-.
T Consensus 357 ~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl 392 (582)
T PRK11176 357 PALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRF 392 (582)
T ss_pred ccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 355666667789999999999999999999887743
No 415
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.77 E-value=0.015 Score=58.98 Aligned_cols=90 Identities=18% Similarity=0.221 Sum_probs=51.0
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCChhhh
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTR 106 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 106 (478)
..|..++|.|++|+|||+++.+++..... .+.+++++.- .+...+...+ +...+..... +- +. .. .....
T Consensus 78 ~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~--~g~~vlYvs~-Ees~~qi~~r-a~rlg~~~~~-l~--~~--~e-~~l~~ 147 (446)
T PRK11823 78 VPGSVVLIGGDPGIGKSTLLLQVAARLAA--AGGKVLYVSG-EESASQIKLR-AERLGLPSDN-LY--LL--AE-TNLEA 147 (446)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEEc-cccHHHHHHH-HHHcCCChhc-EE--Ee--CC-CCHHH
Confidence 35678999999999999999888876542 2446666653 3334444443 2334433222 11 11 11 11222
Q ss_pred HHHHhhCcCcCCCcceEeecccc
Q 011751 107 IKEALLDPYLSRYSAIIVDEAHE 129 (478)
Q Consensus 107 ~~~~l~~~~l~~~~~lIiDE~H~ 129 (478)
+...+. -.+++++|||+++.
T Consensus 148 i~~~i~---~~~~~lVVIDSIq~ 167 (446)
T PRK11823 148 ILATIE---EEKPDLVVIDSIQT 167 (446)
T ss_pred HHHHHH---hhCCCEEEEechhh
Confidence 322322 23688999999873
No 416
>PRK13409 putative ATPase RIL; Provisional
Probab=95.76 E-value=0.041 Score=57.94 Aligned_cols=120 Identities=16% Similarity=0.135 Sum_probs=62.3
Q ss_pred HHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCc-----EEEEecchHH-----HHHHHHHHHHHHhC---------C
Q 011751 25 EVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGK-----LIGVTQPRRV-----AAVTVAKRVAEESG---------V 85 (478)
Q Consensus 25 ~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~-----~i~~~~p~~~-----l~~~~~~~~~~~~~---------~ 85 (478)
.+..|+.+.|.||+||||||++..+.-..... .|. .+.+++.... .+.+.......... .
T Consensus 361 ~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~-~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~ 439 (590)
T PRK13409 361 EIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD-EGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIK 439 (590)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHH
Confidence 45789999999999999999998776432211 121 1222211110 11111100000000 0
Q ss_pred cCCCEEEEEEeecccCChhhhHHHHhhCcCcCCCcceEeec--ccccchhhhHHHHHHHHHHH
Q 011751 86 ELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLLGLLKKVQN 146 (478)
Q Consensus 86 ~~~~~vg~~~~~~~~~~~~~~~~~~l~~~~l~~~~~lIiDE--~H~r~~~~~~~l~~l~~~~~ 146 (478)
.++.. ....+.....|...+.+..+...+..+.+++++|| +|........+..+++++..
T Consensus 440 ~l~l~-~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~ 501 (590)
T PRK13409 440 PLQLE-RLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAE 501 (590)
T ss_pred HCCCH-HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH
Confidence 00000 00111223456666666666667788999999999 44455555666666666543
No 417
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=95.75 E-value=0.0017 Score=67.03 Aligned_cols=52 Identities=21% Similarity=0.154 Sum_probs=41.4
Q ss_pred CCchhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
|.++++.+..+.|+-.++-+.+...+.+|+.+.|+||+||||||++..+.-.
T Consensus 1 m~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~ 52 (490)
T PRK10938 1 MSSLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGE 52 (490)
T ss_pred CceEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4456677777777655566777778889999999999999999999777643
No 418
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.73 E-value=0.073 Score=54.71 Aligned_cols=31 Identities=26% Similarity=0.422 Sum_probs=21.5
Q ss_pred HHHHHhcCC---EEEEEcCCCCcHHhHHHHHHhh
Q 011751 22 LVEEVRKND---ILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 22 ~~~~l~~~~---~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+...+..++ .++++||+|+||||++..++..
T Consensus 26 L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~ 59 (504)
T PRK14963 26 LLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMA 59 (504)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 333344553 3599999999999888666543
No 419
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.73 E-value=0.037 Score=57.47 Aligned_cols=38 Identities=29% Similarity=0.277 Sum_probs=25.2
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecc
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 67 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p 67 (478)
..++|.|++|+|||.++..+.........+..++++..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita 352 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS 352 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 34899999999999777655544322223556777653
No 420
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=95.73 E-value=0.044 Score=57.43 Aligned_cols=36 Identities=22% Similarity=0.311 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+..+.+...+..|+.+.|+||+||||||++..++-.
T Consensus 332 ~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~ 367 (544)
T TIGR01842 332 PTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGI 367 (544)
T ss_pred cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 455666677789999999999999999999887744
No 421
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.72 E-value=0.038 Score=55.29 Aligned_cols=32 Identities=28% Similarity=0.338 Sum_probs=22.7
Q ss_pred HHHHHHHhcCC---EEEEEcCCCCcHHhHHHHHHh
Q 011751 20 KRLVEEVRKND---ILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 20 ~~~~~~l~~~~---~~~i~apTGsGKT~~~~~~~~ 51 (478)
+.+...+.+|+ .++++||.|+||||++..++.
T Consensus 26 ~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~ 60 (397)
T PRK14955 26 RTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAK 60 (397)
T ss_pred HHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHH
Confidence 33444555553 378999999999988866654
No 422
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.72 E-value=0.052 Score=55.22 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=21.2
Q ss_pred HHHhcC---CEEEEEcCCCCcHHhHHHHHHh
Q 011751 24 EEVRKN---DILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 24 ~~l~~~---~~~~i~apTGsGKT~~~~~~~~ 51 (478)
..+..| +.++++||.|+||||++..++.
T Consensus 27 ~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 27 NAFTLNKIPQSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred HHHHcCCCCceEEEECCCCccHHHHHHHHHH
Confidence 344455 4689999999999988866654
No 423
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.71 E-value=0.053 Score=53.65 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=20.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCC
Q 011751 426 MEKPSRASIIKSLEQLFLLGALTD 449 (478)
Q Consensus 426 ~~~p~~~~l~~al~~L~~~g~l~~ 449 (478)
.+|.....+...+..|+.+|.|+.
T Consensus 326 ~~~~~~~~~~~~l~~l~~~gli~~ 349 (365)
T TIGR02928 326 VDPLTQRRISDLLNELDMLGLVEA 349 (365)
T ss_pred CCCCcHHHHHHHHHHHHhcCCeEE
Confidence 356778889999999999999964
No 424
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=95.70 E-value=0.001 Score=64.62 Aligned_cols=52 Identities=21% Similarity=0.245 Sum_probs=40.5
Q ss_pred CCchhHHHhhhcCCc----HHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 1 MPRQKILQQRKSLPI----ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 1 ~~~~~~~~~~~~~~~----~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
|+++++.+..+.|+. ....+.+...+..|+.+.|+|++||||||++..++-.
T Consensus 1 m~~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gl 56 (326)
T PRK11022 1 MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGL 56 (326)
T ss_pred CceEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 556677777777754 2356667778899999999999999999998777643
No 425
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.70 E-value=0.042 Score=65.35 Aligned_cols=65 Identities=17% Similarity=0.163 Sum_probs=46.5
Q ss_pred cCCcHHHHHHHHHHHhc--CCEEEEEcCCCCcHHhHHHHHH--hhcCccCCCcEEEEecchHHHHHHHH
Q 011751 12 SLPIASVEKRLVEEVRK--NDILIIVGETGSGKTTQLPQFL--FHAGFCRDGKLIGVTQPRRVAAVTVA 76 (478)
Q Consensus 12 ~~~~~~~q~~~~~~l~~--~~~~~i~apTGsGKT~~~~~~~--~~~~~~~~~~~i~~~~p~~~l~~~~~ 76 (478)
...+.+-|++++..+.. ++.++|+|+.|+||||++...+ ....+...+..++.+.|+-.++....
T Consensus 1017 ~~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1017 LERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHH
Confidence 35678999999999875 4788999999999998883221 11112233567888899988776553
No 426
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.68 E-value=0.0011 Score=61.42 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=36.3
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+++.+..+.|+-.++.+.+...+.+|+.+.|+||+||||||++..+.-.
T Consensus 3 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred EEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3445555556544455666677889999999999999999999777643
No 427
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=95.68 E-value=0.0074 Score=61.19 Aligned_cols=33 Identities=30% Similarity=0.439 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHH
Q 011751 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~ 50 (478)
.-+.+...+.+|+.+.++|++||||||+...++
T Consensus 306 Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~ 338 (539)
T COG1123 306 AVDDVSFDLREGETLGLVGESGSGKSTLARILA 338 (539)
T ss_pred eeeeeeeEecCCCEEEEECCCCCCHHHHHHHHh
Confidence 355667778899999999999999999987776
No 428
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.68 E-value=0.0013 Score=61.13 Aligned_cols=49 Identities=12% Similarity=0.183 Sum_probs=37.0
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+++.+....++-.++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 3 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred EEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3445555666554556666777889999999999999999999776643
No 429
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.67 E-value=0.026 Score=60.19 Aligned_cols=72 Identities=26% Similarity=0.246 Sum_probs=52.6
Q ss_pred hcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCc--cCCCcEEEEecchHHHHHHHHHHHHHHhC
Q 011751 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF--CRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (478)
Q Consensus 11 ~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~--~~~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (478)
...|+.+-|++++.. ...+++|.|..|||||+++..-+..... ......++++..++.++..+.+|+....+
T Consensus 193 e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg 266 (684)
T PRK11054 193 ESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLG 266 (684)
T ss_pred cCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcC
Confidence 346899999998864 3456799999999999666443322111 11245799999999999999999887766
No 430
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.66 E-value=0.018 Score=53.01 Aligned_cols=29 Identities=34% Similarity=0.414 Sum_probs=24.2
Q ss_pred HhcCCEEEEEcCCCCcHHhHHHHHHhhcC
Q 011751 26 VRKNDILIIVGETGSGKTTQLPQFLFHAG 54 (478)
Q Consensus 26 l~~~~~~~i~apTGsGKT~~~~~~~~~~~ 54 (478)
+..|+.+.|.||+|||||+++.+++....
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~ 44 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQ 44 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHee
Confidence 44678999999999999999888876643
No 431
>PRK04195 replication factor C large subunit; Provisional
Probab=95.66 E-value=0.095 Score=53.91 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.+.+++.||+|+|||+++..++.+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 5789999999999999887666554
No 432
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=95.66 E-value=0.042 Score=59.53 Aligned_cols=36 Identities=28% Similarity=0.372 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
++-+.+...+.+|+.+.|+||+||||||++..+.-.
T Consensus 495 ~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl 530 (711)
T TIGR00958 495 PVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNL 530 (711)
T ss_pred ccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 456667777889999999999999999999877643
No 433
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.65 E-value=0.002 Score=60.32 Aligned_cols=50 Identities=18% Similarity=0.128 Sum_probs=37.8
Q ss_pred chhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 3 ~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
++++.+....++-.++.+.+...+..|+.+.|.||+||||||++..+.-.
T Consensus 7 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (254)
T PRK14273 7 IIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRM 56 (254)
T ss_pred eEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34455566666544556667778889999999999999999999776643
No 434
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.65 E-value=0.0018 Score=58.72 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 15 ~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 15 PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 344555666789999999999999999999777643
No 435
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=95.63 E-value=0.066 Score=56.51 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+.+.+...+.+|+.++|+|++||||||++..++-.
T Consensus 347 il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl 381 (571)
T TIGR02203 347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRF 381 (571)
T ss_pred cccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 44555566789999999999999999999877643
No 436
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=95.63 E-value=0.001 Score=65.72 Aligned_cols=51 Identities=20% Similarity=0.320 Sum_probs=38.4
Q ss_pred CCchhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
|+.+++.+..+.|+-....+.+...+..|+.+.|.||+||||||++..+.-
T Consensus 1 m~~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaG 51 (369)
T PRK11000 1 MASVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG 51 (369)
T ss_pred CCEEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 445556666666654444556666788999999999999999999987774
No 437
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.63 E-value=0.076 Score=49.60 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=23.1
Q ss_pred HHHHHHHHHh------cCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 18 VEKRLVEEVR------KNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 18 ~q~~~~~~l~------~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
.|+.++..+. ..-+.+..||+|+|||+.+..+..
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar 79 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFAR 79 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHH
Confidence 4555555443 345789999999999976655443
No 438
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=95.63 E-value=0.0018 Score=60.54 Aligned_cols=49 Identities=27% Similarity=0.240 Sum_probs=36.4
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+++.+..+.++-...-+.+...+.+|+.++|.||+||||||++..+.-.
T Consensus 4 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (253)
T TIGR02323 4 LQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGR 52 (253)
T ss_pred EEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4455555666544445566677889999999999999999999776644
No 439
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.61 E-value=0.0012 Score=62.11 Aligned_cols=50 Identities=18% Similarity=0.211 Sum_probs=36.9
Q ss_pred chhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 3 ~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
++++.+..+.++-.+..+.+...+.+|+.+.|+||+||||||++..+.-.
T Consensus 12 ~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 61 (259)
T PRK14274 12 VYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLM 61 (259)
T ss_pred eEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 44556666666544445555566789999999999999999999877643
No 440
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.61 E-value=0.015 Score=52.05 Aligned_cols=22 Identities=36% Similarity=0.659 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHhHHHHHHhh
Q 011751 31 ILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.++|+|||||||||++..++..
T Consensus 3 lilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999998665543
No 441
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.61 E-value=0.0014 Score=59.84 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=31.6
Q ss_pred hhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 10 ~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
.+.++-.++.+.+...+.+|+.+.|+||+||||||++..+.-
T Consensus 7 ~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 48 (220)
T cd03265 7 VKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred EEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 334433344556666778999999999999999999977664
No 442
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=95.60 E-value=0.0012 Score=64.80 Aligned_cols=52 Identities=29% Similarity=0.351 Sum_probs=39.3
Q ss_pred CCchhHHHhhhcC-CcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 1 MPRQKILQQRKSL-PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
|+.+++.+..+.| .-....+.+...+..|+.+.+.||+||||||++..++-.
T Consensus 1 m~~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl 53 (356)
T PRK11650 1 MAGLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGL 53 (356)
T ss_pred CCEEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCC
Confidence 4555666667777 334455566677889999999999999999999887743
No 443
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.60 E-value=0.086 Score=55.27 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=24.0
Q ss_pred HHHHHHHhcCC---EEEEEcCCCCcHHhHHHHHHhh
Q 011751 20 KRLVEEVRKND---ILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 20 ~~~~~~l~~~~---~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+.+...+..|+ .++++||.|+|||+++..++..
T Consensus 34 ~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~ 69 (598)
T PRK09111 34 RTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARA 69 (598)
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 34444555554 6899999999999888776643
No 444
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.59 E-value=0.0015 Score=59.39 Aligned_cols=44 Identities=20% Similarity=0.306 Sum_probs=32.3
Q ss_pred hhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 9 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 9 ~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
....++-.+..+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 6 l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 6 VTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred eEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 33444433445556666789999999999999999999776644
No 445
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.59 E-value=0.0012 Score=62.69 Aligned_cols=52 Identities=17% Similarity=0.132 Sum_probs=39.4
Q ss_pred CCchhHHHhhhcCCc-HHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 1 MPRQKILQQRKSLPI-ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 1 ~~~~~~~~~~~~~~~-~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
|.++++.+..+.++- ....+.+...+..|+.+.|+|++||||||++..+.-.
T Consensus 1 ~~~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl 53 (277)
T PRK13652 1 MHLIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGI 53 (277)
T ss_pred CceEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 455666677777752 3356666677889999999999999999999777643
No 446
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=95.59 E-value=0.0011 Score=64.73 Aligned_cols=50 Identities=22% Similarity=0.179 Sum_probs=38.4
Q ss_pred chhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 3 ~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
++++.+..+.|+-....+.+...+..|+.+.++||+||||||++..+.-.
T Consensus 41 ~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl 90 (340)
T PRK13536 41 AIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGM 90 (340)
T ss_pred eEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 34555666666655556666677889999999999999999999777643
No 447
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.59 E-value=0.029 Score=51.40 Aligned_cols=29 Identities=38% Similarity=0.410 Sum_probs=24.0
Q ss_pred HhcCCEEEEEcCCCCcHHhHHHHHHhhcC
Q 011751 26 VRKNDILIIVGETGSGKTTQLPQFLFHAG 54 (478)
Q Consensus 26 l~~~~~~~i~apTGsGKT~~~~~~~~~~~ 54 (478)
+..|+.+.|.||+|+|||+++.+++....
T Consensus 16 ~~~g~v~~I~G~~GsGKT~l~~~ia~~~~ 44 (226)
T cd01393 16 IPTGRITEIFGEFGSGKTQLCLQLAVEAQ 44 (226)
T ss_pred CcCCcEEEEeCCCCCChhHHHHHHHHHhh
Confidence 44678999999999999988888776643
No 448
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.59 E-value=0.0017 Score=59.32 Aligned_cols=45 Identities=27% Similarity=0.318 Sum_probs=33.5
Q ss_pred HhhhcCCc--HHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 8 QQRKSLPI--ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 8 ~~~~~~~~--~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+..+.++- .++.+.+...+..|+.+.|+||+||||||++..+.-.
T Consensus 5 ~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 5 NLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred eeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 33444443 3455666677889999999999999999999777643
No 449
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.59 E-value=0.023 Score=55.73 Aligned_cols=24 Identities=42% Similarity=0.668 Sum_probs=20.6
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
.+..++|+|||||||||++..++.
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~ 156 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIR 156 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999998866553
No 450
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.58 E-value=0.099 Score=55.44 Aligned_cols=35 Identities=29% Similarity=0.355 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+-+.+...+.+|+.++|+|++||||||++..+.-.
T Consensus 356 il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl 390 (592)
T PRK10790 356 VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGY 390 (592)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45555666789999999999999999999887643
No 451
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.58 E-value=0.13 Score=49.80 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=22.4
Q ss_pred HHHHHHHHHhcCC---EEEEEcCCCCcHHhHHHHHHh
Q 011751 18 VEKRLVEEVRKND---ILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 18 ~q~~~~~~l~~~~---~~~i~apTGsGKT~~~~~~~~ 51 (478)
..+.+...+..++ .+++.||+|+|||+++..+..
T Consensus 29 ~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~ 65 (316)
T PHA02544 29 DKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCN 65 (316)
T ss_pred HHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHH
Confidence 3444555555554 345589999999988765544
No 452
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.58 E-value=0.0011 Score=59.62 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=34.9
Q ss_pred HHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 6 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 6 ~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+.+..+.++-.+..+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 4 ~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 4 VIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred EEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 33444555444456666777889999999999999999999876543
No 453
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=95.57 E-value=0.05 Score=57.48 Aligned_cols=35 Identities=29% Similarity=0.270 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
..+.+...+.+|+.+.|+||+||||||++..+.-.
T Consensus 350 ~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~ 384 (585)
T TIGR01192 350 GVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRV 384 (585)
T ss_pred cccceeEEEcCCCEEEEECCCCCCHHHHHHHHccC
Confidence 45556666789999999999999999999877643
No 454
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.57 E-value=0.0015 Score=61.05 Aligned_cols=49 Identities=18% Similarity=0.148 Sum_probs=37.0
Q ss_pred chhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 3 ~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
++++.+..+.++-....+.+...+..|+.+.|.||+||||||++..+.-
T Consensus 6 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 6 ILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred eEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3455556666654455566667788999999999999999999977764
No 455
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.57 E-value=0.0014 Score=61.46 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=36.2
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+++.+..+.++-.+..+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 13 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 61 (258)
T PRK14268 13 IKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRM 61 (258)
T ss_pred EEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4445555555544455666677889999999999999999999777643
No 456
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=95.57 E-value=0.052 Score=58.70 Aligned_cols=35 Identities=29% Similarity=0.364 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+.+.+...+..|+.+.|+|++||||||++..+.-.
T Consensus 472 il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~ 506 (694)
T TIGR01846 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRL 506 (694)
T ss_pred ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45556666789999999999999999999887743
No 457
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.56 E-value=0.0014 Score=59.69 Aligned_cols=36 Identities=31% Similarity=0.348 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
++.+.+...+..|+.+.|+||+||||||++..+.-.
T Consensus 18 ~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 18 QALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred eEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 344555667789999999999999999999777643
No 458
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=95.56 E-value=0.0016 Score=60.88 Aligned_cols=49 Identities=18% Similarity=0.192 Sum_probs=36.5
Q ss_pred chhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 3 ~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
++++.+..+.++-.+..+.+...+..|+.+.|+||+||||||++..+.-
T Consensus 5 ~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3455555666654445566667788999999999999999999977753
No 459
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.56 E-value=0.019 Score=51.85 Aligned_cols=39 Identities=28% Similarity=0.288 Sum_probs=28.0
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecc
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 67 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p 67 (478)
..|+.+.|.||+|||||+++.+++.+.... +..++++..
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~ 48 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDT 48 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEC
Confidence 457889999999999998887777655322 344555544
No 460
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.54 E-value=0.002 Score=59.20 Aligned_cols=36 Identities=31% Similarity=0.374 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+..+.+...+..|+.+.|.||+||||||++..+.-.
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 355666777889999999999999999999777644
No 461
>PLN03232 ABC transporter C family member; Provisional
Probab=95.54 E-value=0.011 Score=69.16 Aligned_cols=150 Identities=17% Similarity=0.178 Sum_probs=0.0
Q ss_pred hhHHHhhhcCCcH--HHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHH--------
Q 011751 4 QKILQQRKSLPIA--SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAV-------- 73 (478)
Q Consensus 4 ~~~~~~~~~~~~~--~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~-------- 73 (478)
+++.+....|+.. ++.+.+...+..|+.+.|+|+|||||||++..++.......+.-.+-=..-+..-..
T Consensus 1235 I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~i 1314 (1495)
T PLN03232 1235 IKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSI 1314 (1495)
T ss_pred EEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEE
Q ss_pred ---------------------------------HHHHHHHHHhCCcCCCEEEEEEeecccCChhhhHHHHhhCcCcCCCc
Q 011751 74 ---------------------------------TVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYS 120 (478)
Q Consensus 74 ---------------------------------~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 120 (478)
.....+-..........+| ......+..++.+-.+.+..+.+.+
T Consensus 1315 VpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~---e~G~~LSgGQrQrlaLARALLr~~~ 1391 (1495)
T PLN03232 1315 IPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVS---EGGENFSVGQRQLLSLARALLRRSK 1391 (1495)
T ss_pred ECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceec---CCCCCCCHHHHHHHHHHHHHHhCCC
Q ss_pred ceEeecccccchhhhHHHHHHHHHHHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEc
Q 011751 121 AIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMS 198 (478)
Q Consensus 121 ~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lS 198 (478)
++|+||+ .-+.+.+--..+.+.+.... .+.-+|..+
T Consensus 1392 ILILDEA-TSaLD~~Te~~Iq~~L~~~~-----------------------------------------~~~TvI~IA 1427 (1495)
T PLN03232 1392 ILVLDEA-TASVDVRTDSLIQRTIREEF-----------------------------------------KSCTMLVIA 1427 (1495)
T ss_pred EEEEECC-cccCCHHHHHHHHHHHHHHc-----------------------------------------CCCEEEEEe
No 462
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=95.54 E-value=0.026 Score=60.93 Aligned_cols=46 Identities=15% Similarity=0.215 Sum_probs=30.1
Q ss_pred CCCCcchHHHHHHHHHHhh----hcCCCCCEEEEcCCHHHHHHHHHHHHH
Q 011751 231 LYPEPDYLDATLITIFQVH----LDEAPGDILVFLTGQEEIESVERLVQE 276 (478)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~LVF~~s~~~~~~l~~~l~~ 276 (478)
..|..+.+...+..+.... ...+.+++||||+.+..|..+.+.|..
T Consensus 268 e~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 268 ENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred cCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 3444444445444444331 113567899999999999999988855
No 463
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=95.54 E-value=0.0017 Score=61.08 Aligned_cols=48 Identities=21% Similarity=0.254 Sum_probs=35.4
Q ss_pred hHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 5 ~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
++.+..+.|+-.+.-+.+...+..|+.+.|+||+||||||++..+.-.
T Consensus 15 ~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 15 QVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred EEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 344455555544455566677889999999999999999999777643
No 464
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.54 E-value=0.0018 Score=59.84 Aligned_cols=44 Identities=23% Similarity=0.178 Sum_probs=32.4
Q ss_pred HhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 8 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 8 ~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
+....|+-.+..+.+...+.+|+.+.|.||+||||||++..+.-
T Consensus 5 ~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (236)
T cd03219 5 GLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISG 48 (236)
T ss_pred eeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcC
Confidence 33444443334555666788999999999999999999977654
No 465
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.54 E-value=0.13 Score=48.95 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=17.7
Q ss_pred CCEEEEEcCCCCcHHhHHHHHH
Q 011751 29 NDILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~ 50 (478)
+.++++.||+|+|||+++..+.
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia 79 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMA 79 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHH
Confidence 3479999999999998874443
No 466
>CHL00176 ftsH cell division protein; Validated
Probab=95.52 E-value=0.056 Score=57.07 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=19.4
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
+.+++.||+|+|||+++..++.+.
T Consensus 217 ~gVLL~GPpGTGKT~LAralA~e~ 240 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAIAGEA 240 (638)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999998887665443
No 467
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=95.51 E-value=0.0014 Score=63.70 Aligned_cols=52 Identities=23% Similarity=0.250 Sum_probs=39.8
Q ss_pred CCchhHHHhhhcCCc----HHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 1 MPRQKILQQRKSLPI----ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 1 ~~~~~~~~~~~~~~~----~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
|+++++.+..+.|+. ....+.+...+..|+.+.|+|++||||||++..++-.
T Consensus 1 ~~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl 56 (330)
T PRK15093 1 MPLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGV 56 (330)
T ss_pred CCeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 556677777777742 2355667777889999999999999999998776643
No 468
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.51 E-value=0.008 Score=50.19 Aligned_cols=25 Identities=40% Similarity=0.697 Sum_probs=21.9
Q ss_pred HhcCCEEEEEcCCCCcHHhHHHHHH
Q 011751 26 VRKNDILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 26 l~~~~~~~i~apTGsGKT~~~~~~~ 50 (478)
+..|+.++|+|++||||||++..+.
T Consensus 8 i~~g~~~~i~G~nGsGKStLl~~l~ 32 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLLKALA 32 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHT
T ss_pred EcCCCEEEEEccCCCccccceeeec
Confidence 4578999999999999999997665
No 469
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.51 E-value=0.0016 Score=59.66 Aligned_cols=42 Identities=21% Similarity=0.308 Sum_probs=30.7
Q ss_pred hhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 10 ~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
.+.++-.+..+.+...+..|+.+.|+||+||||||++..+.-
T Consensus 7 ~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (222)
T cd03224 7 NAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred EeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhC
Confidence 334443334455566778999999999999999999976653
No 470
>PLN03130 ABC transporter C family member; Provisional
Probab=95.50 E-value=0.019 Score=67.48 Aligned_cols=35 Identities=31% Similarity=0.425 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
++.+.+...+..|+.+.|+|+|||||||++..+..
T Consensus 1253 ~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~r 1287 (1622)
T PLN03130 1253 PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFR 1287 (1622)
T ss_pred ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 46677777888999999999999999999877764
No 471
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=95.50 E-value=0.053 Score=57.32 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.-+.+-..+.+|+.++|+|++||||||++..++-.
T Consensus 355 iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl 389 (576)
T TIGR02204 355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRF 389 (576)
T ss_pred cccceeEEecCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 44455556779999999999999999999887743
No 472
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.50 E-value=0.0012 Score=59.62 Aligned_cols=45 Identities=18% Similarity=0.113 Sum_probs=33.4
Q ss_pred HhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 8 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 8 ~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+..+.++-.+..+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 6 ~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 6 NLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred EEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 334444444455566677889999999999999999999776644
No 473
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.49 E-value=0.0096 Score=47.03 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=21.9
Q ss_pred HHhcCCEEEEEcCCCCcHHhHHHHHH
Q 011751 25 EVRKNDILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 25 ~l~~~~~~~i~apTGsGKT~~~~~~~ 50 (478)
.+..++.+++.||+||||||++..+.
T Consensus 11 ~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 11 DVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 34568899999999999999987754
No 474
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.49 E-value=0.014 Score=52.93 Aligned_cols=22 Identities=36% Similarity=0.609 Sum_probs=19.0
Q ss_pred CEEEEEcCCCCcHHhHHHHHHh
Q 011751 30 DILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~ 51 (478)
+.++|+||+|+||||++..+..
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6799999999999999877653
No 475
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.49 E-value=0.0021 Score=58.47 Aligned_cols=46 Identities=26% Similarity=0.370 Sum_probs=33.3
Q ss_pred HHhhhcCC-cHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 7 LQQRKSLP-IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 7 ~~~~~~~~-~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+..+.++ -.+..+.+...+.+|+.+.|+||+||||||++..+.-.
T Consensus 5 ~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 5 HNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34444442 23455566677889999999999999999999766543
No 476
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=95.49 E-value=0.0019 Score=59.96 Aligned_cols=44 Identities=30% Similarity=0.311 Sum_probs=32.9
Q ss_pred hhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 9 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 9 ~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
..+.++-.+..+.+...+.+|+.+.|+||+||||||++..+.-.
T Consensus 6 l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 6 LHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34444433445566677889999999999999999999776644
No 477
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.49 E-value=0.0017 Score=59.22 Aligned_cols=46 Identities=20% Similarity=0.179 Sum_probs=33.8
Q ss_pred HHhhhcCCcH----HHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 7 LQQRKSLPIA----SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 7 ~~~~~~~~~~----~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+..+.++-. ++-+.+...+..|+.+.|.||+||||||++..+.-.
T Consensus 5 ~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 5 DALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred EEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3444455433 455666667789999999999999999999777643
No 478
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.48 E-value=0.0017 Score=60.64 Aligned_cols=50 Identities=14% Similarity=0.120 Sum_probs=37.9
Q ss_pred chhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 3 ~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
++++.+....++-.+..+.+...+..|+.+.|+|++||||||++..+.-.
T Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14251 4 IISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 34555666666655566666777889999999999999999998776643
No 479
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=95.47 E-value=0.0014 Score=61.32 Aligned_cols=49 Identities=18% Similarity=0.210 Sum_probs=37.6
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+++.+.++.++-.+..+.+...+..|+.+.|+|++||||||++..+.-.
T Consensus 3 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (255)
T PRK11231 3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARL 51 (255)
T ss_pred EEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4555666666654556666777889999999999999999999777644
No 480
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.47 E-value=0.0015 Score=61.08 Aligned_cols=47 Identities=21% Similarity=0.238 Sum_probs=34.0
Q ss_pred HHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 6 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 6 ~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+.+..+.|+-.++.+.+...+.+|+.+.|+||+||||||++..+.-.
T Consensus 15 i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 15 LNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred EEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 33444445433445556667789999999999999999999777643
No 481
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.47 E-value=0.0021 Score=59.28 Aligned_cols=44 Identities=23% Similarity=0.273 Sum_probs=32.6
Q ss_pred hhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 9 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 9 ~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
..+.++-.+..+.+...+..|+.+.|.||+||||||++..+.-.
T Consensus 6 l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 6 LSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred EEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 33444433445566677889999999999999999999777643
No 482
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.47 E-value=0.072 Score=55.22 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=23.9
Q ss_pred HHHHHHHHhcCC---EEEEEcCCCCcHHhHHHHHHhh
Q 011751 19 EKRLVEEVRKND---ILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 19 q~~~~~~l~~~~---~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+.+...+..++ -++++||.|+||||++..++..
T Consensus 25 ~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~ 61 (527)
T PRK14969 25 VRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKS 61 (527)
T ss_pred HHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 344444555554 4689999999999888776644
No 483
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=95.47 E-value=0.0011 Score=62.66 Aligned_cols=50 Identities=20% Similarity=0.120 Sum_probs=35.5
Q ss_pred chhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 3 ~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
++++.+..+.++-.+..+.+...+..|+.+.|+||+||||||++..+.-.
T Consensus 7 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (269)
T PRK11831 7 LVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQ 56 (269)
T ss_pred eEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34445555555433344556667789999999999999999999776643
No 484
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=95.46 E-value=0.0018 Score=60.70 Aligned_cols=50 Identities=26% Similarity=0.227 Sum_probs=37.7
Q ss_pred chhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 3 ~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
++++.+..+.++-.+.-+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 6 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 6 LLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred eEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34556666666544455566667889999999999999999999777644
No 485
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=95.46 E-value=0.05 Score=51.78 Aligned_cols=99 Identities=18% Similarity=0.246 Sum_probs=50.7
Q ss_pred HHHHHHHhc----CCEEEEEcCCCCcHHhHHHHHHhhcCccCC-CcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEE
Q 011751 20 KRLVEEVRK----NDILIIVGETGSGKTTQLPQFLFHAGFCRD-GKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYS 94 (478)
Q Consensus 20 ~~~~~~l~~----~~~~~i~apTGsGKT~~~~~~~~~~~~~~~-~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~ 94 (478)
+++...+.. .+.+.|+|+.|+|||+++..++........ ...+.+.........+..+.+....+......
T Consensus 6 ~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---- 81 (287)
T PF00931_consen 6 EKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSI---- 81 (287)
T ss_dssp HHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STS----
T ss_pred HHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccccccc----
Confidence 445555555 567899999999999999887755222222 22333332222222444455555555432111
Q ss_pred EeecccCChh---hhHHHHhhCcCcCCCcceEeecccc
Q 011751 95 IRFDDRTSTS---TRIKEALLDPYLSRYSAIIVDEAHE 129 (478)
Q Consensus 95 ~~~~~~~~~~---~~~~~~l~~~~l~~~~~lIiDE~H~ 129 (478)
....... ..+...+.+ +--++|+|.+..
T Consensus 82 ---~~~~~~~~~~~~l~~~L~~----~~~LlVlDdv~~ 112 (287)
T PF00931_consen 82 ---SDPKDIEELQDQLRELLKD----KRCLLVLDDVWD 112 (287)
T ss_dssp ---SCCSSHHHHHHHHHHHHCC----TSEEEEEEEE-S
T ss_pred ---ccccccccccccchhhhcc----ccceeeeeeecc
Confidence 0111111 222233333 356899999974
No 486
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.45 E-value=0.0017 Score=59.65 Aligned_cols=45 Identities=20% Similarity=0.216 Sum_probs=32.6
Q ss_pred hhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 9 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 9 ~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
..+.++-.+..+.+...+.+|+.+.|+||+||||||++..+.-..
T Consensus 6 l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 6 LNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 334444334445556677899999999999999999998766443
No 487
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=95.43 E-value=0.039 Score=59.27 Aligned_cols=68 Identities=18% Similarity=0.308 Sum_probs=47.9
Q ss_pred HhhhcCCcHHHHHHHHHH----HhcCCEEEEEcCCCCcHH--hHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHH
Q 011751 8 QQRKSLPIASVEKRLVEE----VRKNDILIIVGETGSGKT--TQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKR 78 (478)
Q Consensus 8 ~~~~~~~~~~~q~~~~~~----l~~~~~~~i~apTGsGKT--~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~ 78 (478)
.....+.+++.|.++... +..++.+++.||||+||| +++|.+..... .+..+++..+++.+..|..++
T Consensus 9 ~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~---~~~~viist~t~~lq~q~~~~ 82 (654)
T COG1199 9 VAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYARE---EGKKVIISTRTKALQEQLLEE 82 (654)
T ss_pred hhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHH---cCCcEEEECCCHHHHHHHHHh
Confidence 344556678888877644 456777999999999999 44444433321 246789999999888777665
No 488
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.43 E-value=0.002 Score=58.19 Aligned_cols=36 Identities=31% Similarity=0.414 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+..+.+...+..|+.+.|+||+||||||++..+.-.
T Consensus 12 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 12 IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 344455566789999999999999999999777643
No 489
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.43 E-value=0.0018 Score=58.79 Aligned_cols=42 Identities=33% Similarity=0.431 Sum_probs=31.1
Q ss_pred hcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 11 ~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
..++-.+..+.+...+..|+.+.++||+||||||++..+.-.
T Consensus 8 ~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 8 KSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred EEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 334333344555667789999999999999999998777643
No 490
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.0058 Score=52.78 Aligned_cols=34 Identities=29% Similarity=0.372 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHH
Q 011751 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~ 50 (478)
..-..+...+..|+-+.|.||+||||||++..++
T Consensus 16 ~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRila 49 (209)
T COG4133 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILA 49 (209)
T ss_pred eeecceeEEEcCCCEEEEECCCCCcHHHHHHHHH
Confidence 3344566678899999999999999999997766
No 491
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.42 E-value=0.026 Score=54.27 Aligned_cols=40 Identities=18% Similarity=0.138 Sum_probs=28.2
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHhhcCcc----CCCcEEEEec
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLFHAGFC----RDGKLIGVTQ 66 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~~~~~~----~~~~~i~~~~ 66 (478)
..|..+.|+||+|||||+++.+++...... ..+..++|+.
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId 137 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID 137 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE
Confidence 355789999999999998888777654332 1234566665
No 492
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=95.41 E-value=0.0019 Score=60.83 Aligned_cols=50 Identities=16% Similarity=0.247 Sum_probs=37.2
Q ss_pred chhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 3 ~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
++++.+..+.++-.+..+.+...+..|+.+.|+||+||||||++..+.-.
T Consensus 4 ~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 53 (262)
T PRK09984 4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGL 53 (262)
T ss_pred EEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 34455555666544455666677889999999999999999999776643
No 493
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.41 E-value=0.0018 Score=61.18 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=34.6
Q ss_pred hHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 5 ~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
++.+..+.|+-..+.+.+...+..|+.+.|.||+||||||++..+.-
T Consensus 23 ~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 69 (268)
T PRK14248 23 EVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINR 69 (268)
T ss_pred EEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 34444555554445556666778999999999999999999977764
No 494
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.40 E-value=0.0017 Score=60.23 Aligned_cols=49 Identities=20% Similarity=0.166 Sum_probs=36.6
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+++.+..+.++-.+..+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 3 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 3 LYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred EEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3444555566544456666677889999999999999999998777644
No 495
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=95.40 E-value=0.0021 Score=60.56 Aligned_cols=48 Identities=23% Similarity=0.212 Sum_probs=37.1
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
+++.+..+.++-.+..+.+...+..|+.+.|+||+||||||++..+.-
T Consensus 11 l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 58 (264)
T PRK14243 11 LRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNR 58 (264)
T ss_pred EEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 345555566654455667777889999999999999999999987764
No 496
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=95.40 E-value=0.0012 Score=64.82 Aligned_cols=52 Identities=27% Similarity=0.307 Sum_probs=38.6
Q ss_pred CCchhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
|+.+++.+..+.|+-....+.+...+..|+.+.+.||+||||||++..+.-.
T Consensus 2 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl 53 (353)
T TIGR03265 2 SPYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL 53 (353)
T ss_pred CcEEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3445666666777654444456666789999999999999999999877743
No 497
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=95.40 E-value=0.12 Score=46.14 Aligned_cols=22 Identities=32% Similarity=0.609 Sum_probs=14.6
Q ss_pred EEEEEcCCCCcHHhHHHHH-Hhh
Q 011751 31 ILIIVGETGSGKTTQLPQF-LFH 52 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~-~~~ 52 (478)
..+++|.+|||||+.+... +..
T Consensus 2 I~~~~G~pGsGKS~~av~~~i~~ 24 (193)
T PF05707_consen 2 IYLITGKPGSGKSYYAVSYVIIP 24 (193)
T ss_dssp EEEEE--TTSSHHHHHHHHHHH-
T ss_pred EEEEEcCCCCcHhHHHHHHHHHH
Confidence 4689999999999776666 444
No 498
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.40 E-value=0.0031 Score=57.76 Aligned_cols=46 Identities=22% Similarity=0.229 Sum_probs=34.6
Q ss_pred HHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 7 LQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 7 ~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+....+...++.+.+...+..|+.+.|.||+||||||++..+.-.
T Consensus 26 ~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 26 LGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred hhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3344445445566666777889999999999999999999777643
No 499
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.39 E-value=0.17 Score=54.45 Aligned_cols=20 Identities=40% Similarity=0.630 Sum_probs=16.1
Q ss_pred EEEEEcCCCCcHHhHHHHHH
Q 011751 31 ILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~ 50 (478)
.+.|.|+||+|||+++..++
T Consensus 783 vLYIyG~PGTGKTATVK~VL 802 (1164)
T PTZ00112 783 ILYISGMPGTGKTATVYSVI 802 (1164)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 35699999999997776665
No 500
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=95.39 E-value=0.0018 Score=60.77 Aligned_cols=49 Identities=12% Similarity=0.132 Sum_probs=37.1
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+++.+..+.|+-.+..+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 5 l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 5 IDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred EEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3445555666544556666777889999999999999999999777643
Done!