Query 011751
Match_columns 478
No_of_seqs 297 out of 2655
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 14:35:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011751.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011751hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 100.0 6.6E-69 2.3E-73 572.7 42.5 434 3-478 83-534 (773)
2 2p6r_A Afuhel308 helicase; pro 100.0 6.2E-51 2.1E-55 435.2 19.7 408 7-477 18-499 (702)
3 2va8_A SSO2462, SKI2-type heli 100.0 4E-51 1.4E-55 438.0 15.6 416 5-477 21-518 (715)
4 2zj8_A DNA helicase, putative 100.0 1.2E-48 4E-53 418.8 14.7 415 4-477 13-502 (720)
5 4f92_B U5 small nuclear ribonu 100.0 1.7E-42 5.9E-47 393.6 27.5 413 15-476 927-1433(1724)
6 4f92_B U5 small nuclear ribonu 100.0 1.2E-41 4.1E-46 386.8 26.2 412 15-476 80-602 (1724)
7 2db3_A ATP-dependent RNA helic 100.0 4.1E-40 1.4E-44 332.0 23.2 310 5-387 69-407 (434)
8 3eiq_A Eukaryotic initiation f 100.0 1E-40 3.6E-45 335.0 13.4 315 4-391 52-391 (414)
9 3fht_A ATP-dependent RNA helic 100.0 4.3E-39 1.5E-43 322.9 24.6 319 5-388 38-380 (412)
10 2i4i_A ATP-dependent RNA helic 100.0 3.1E-39 1.1E-43 324.6 21.0 318 4-391 27-387 (417)
11 1hv8_A Putative ATP-dependent 100.0 1.1E-38 3.7E-43 314.8 23.9 312 4-391 18-349 (367)
12 3pey_A ATP-dependent RNA helic 100.0 2.1E-38 7.2E-43 315.9 25.9 319 4-388 17-357 (395)
13 2j0s_A ATP-dependent RNA helic 100.0 2.7E-39 9.1E-44 324.4 19.3 313 6-391 51-387 (410)
14 3l9o_A ATP-dependent RNA helic 100.0 6.4E-40 2.2E-44 360.9 15.2 320 9-387 179-597 (1108)
15 1xti_A Probable ATP-dependent 100.0 1.8E-37 6.3E-42 309.0 29.3 312 5-388 21-358 (391)
16 2v1x_A ATP-dependent DNA helic 100.0 4.5E-38 1.6E-42 326.4 25.1 302 12-390 42-377 (591)
17 1s2m_A Putative ATP-dependent 100.0 3.5E-38 1.2E-42 315.2 23.0 311 7-391 36-369 (400)
18 2xgj_A ATP-dependent RNA helic 100.0 2.2E-38 7.4E-43 345.9 21.7 319 10-387 82-499 (1010)
19 3fmp_B ATP-dependent RNA helic 100.0 5.9E-39 2E-43 328.3 14.7 319 5-388 105-447 (479)
20 3i5x_A ATP-dependent RNA helic 100.0 3.4E-38 1.2E-42 329.2 20.4 323 7-390 87-452 (563)
21 4a4z_A Antiviral helicase SKI2 100.0 2.8E-39 9.6E-44 352.8 12.0 319 10-385 35-490 (997)
22 1oyw_A RECQ helicase, ATP-depe 100.0 1.5E-37 5.2E-42 319.3 22.7 293 12-390 23-346 (523)
23 3sqw_A ATP-dependent RNA helic 100.0 1.3E-37 4.6E-42 325.1 21.4 323 6-390 35-401 (579)
24 3o8b_A HCV NS3 protease/helica 100.0 1.9E-38 6.4E-43 327.3 14.2 301 5-390 208-517 (666)
25 1fuu_A Yeast initiation factor 100.0 1.1E-38 3.9E-43 317.9 11.7 315 5-392 34-371 (394)
26 2z83_A Helicase/nucleoside tri 100.0 1.9E-37 6.6E-42 313.8 19.8 288 19-387 11-313 (459)
27 2z0m_A 337AA long hypothetical 100.0 9E-37 3.1E-41 297.6 19.2 297 4-385 6-321 (337)
28 2jlq_A Serine protease subunit 100.0 1.4E-37 4.7E-42 314.4 13.1 288 16-385 6-309 (451)
29 2whx_A Serine protease/ntpase/ 100.0 2.4E-37 8.2E-42 322.0 10.6 292 10-385 170-476 (618)
30 3fho_A ATP-dependent RNA helic 100.0 2.1E-37 7.2E-42 318.2 9.2 311 12-387 139-470 (508)
31 3oiy_A Reverse gyrase helicase 100.0 1.7E-36 5.8E-41 304.4 15.6 309 4-386 11-364 (414)
32 3rc3_A ATP-dependent RNA helic 100.0 3.1E-37 1.1E-41 322.0 10.3 310 26-416 152-476 (677)
33 1yks_A Genome polyprotein [con 100.0 2.4E-36 8.3E-41 304.0 16.2 279 25-384 4-296 (440)
34 2ykg_A Probable ATP-dependent 100.0 1.5E-36 5.1E-41 324.7 13.5 138 252-413 396-552 (696)
35 2v6i_A RNA helicase; membrane, 100.0 2.8E-35 9.7E-40 295.6 17.4 275 28-384 1-287 (431)
36 2wv9_A Flavivirin protease NS2 100.0 4.6E-36 1.6E-40 314.2 11.7 289 15-384 216-530 (673)
37 4a2p_A RIG-I, retinoic acid in 100.0 7.7E-35 2.6E-39 303.5 19.5 120 252-390 388-511 (556)
38 1wp9_A ATP-dependent RNA helic 100.0 9.2E-34 3.1E-38 290.0 19.8 112 252-390 359-478 (494)
39 3tbk_A RIG-I helicase domain; 100.0 2.1E-33 7.4E-38 292.4 22.5 120 252-390 387-510 (555)
40 4a2q_A RIG-I, retinoic acid in 100.0 1.9E-33 6.6E-38 303.8 19.6 119 252-389 629-751 (797)
41 2eyq_A TRCF, transcription-rep 100.0 2.1E-32 7.1E-37 303.0 25.8 299 9-387 598-922 (1151)
42 1gm5_A RECG; helicase, replica 100.0 1.8E-33 6.2E-38 298.0 14.9 295 10-385 364-695 (780)
43 4gl2_A Interferon-induced heli 100.0 1.7E-33 5.9E-38 301.2 10.2 109 254-384 400-516 (699)
44 4ddu_A Reverse gyrase; topoiso 100.0 1.3E-32 4.4E-37 302.9 16.6 280 7-342 71-388 (1104)
45 4a2w_A RIG-I, retinoic acid in 100.0 3.4E-32 1.2E-36 297.2 19.6 119 252-389 629-751 (936)
46 1gku_B Reverse gyrase, TOP-RG; 100.0 7.5E-31 2.6E-35 289.0 13.6 274 6-341 49-352 (1054)
47 2fwr_A DNA repair protein RAD2 100.0 3.1E-31 1E-35 270.7 7.7 286 12-387 91-454 (472)
48 2oca_A DAR protein, ATP-depend 100.0 3.4E-31 1.2E-35 273.0 6.0 294 12-385 111-453 (510)
49 1tf5_A Preprotein translocase 100.0 6E-29 2.1E-33 258.7 21.0 336 12-388 81-546 (844)
50 3h1t_A Type I site-specific re 100.0 1.3E-28 4.5E-33 257.9 15.6 299 13-377 177-545 (590)
51 2fsf_A Preprotein translocase 100.0 2.6E-27 8.9E-32 245.8 22.7 162 193-387 378-583 (853)
52 3eaq_A Heat resistant RNA depe 99.9 4.6E-28 1.6E-32 219.4 7.6 171 244-441 21-211 (212)
53 1nkt_A Preprotein translocase 99.9 1.3E-25 4.3E-30 233.5 23.7 339 11-387 108-617 (922)
54 3dmq_A RNA polymerase-associat 99.9 4.6E-26 1.6E-30 249.2 12.8 118 242-385 491-613 (968)
55 3i32_A Heat resistant RNA depe 99.9 6.6E-27 2.3E-31 221.6 5.1 190 226-446 4-213 (300)
56 3llm_A ATP-dependent RNA helic 99.9 3E-23 1E-27 191.1 16.7 172 4-217 51-234 (235)
57 1c4o_A DNA nucleotide excision 99.9 2.6E-22 8.7E-27 211.1 25.2 112 253-386 438-549 (664)
58 1z63_A Helicase of the SNF2/RA 99.9 1.4E-23 5E-28 215.4 15.3 110 253-388 340-454 (500)
59 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 9.6E-23 3.3E-27 221.5 18.8 306 13-385 270-707 (1038)
60 3jux_A Protein translocase sub 99.9 2.1E-22 7.2E-27 205.0 20.0 165 192-388 410-588 (822)
61 2rb4_A ATP-dependent RNA helic 99.9 8.3E-23 2.8E-27 179.3 11.2 143 224-390 7-150 (175)
62 2hjv_A ATP-dependent RNA helic 99.9 7.9E-23 2.7E-27 177.2 10.5 136 225-391 10-146 (163)
63 1z3i_X Similar to RAD54-like; 99.9 3.6E-21 1.2E-25 202.4 22.9 109 252-387 414-528 (644)
64 1t5i_A C_terminal domain of A 99.9 1.9E-22 6.6E-27 176.2 9.7 133 224-387 5-138 (172)
65 1fuk_A Eukaryotic initiation f 99.9 1.1E-22 3.6E-27 176.8 8.0 116 248-390 24-140 (165)
66 2jgn_A DBX, DDX3, ATP-dependen 99.9 3.5E-22 1.2E-26 176.5 9.7 137 224-390 19-156 (185)
67 2p6n_A ATP-dependent RNA helic 99.9 4.7E-22 1.6E-26 176.5 9.8 131 225-387 30-161 (191)
68 2yjt_D ATP-dependent RNA helic 99.7 1.1E-22 3.7E-27 177.6 0.0 120 245-391 21-141 (170)
69 3mwy_W Chromo domain-containin 99.8 4.9E-21 1.7E-25 206.4 12.5 112 252-390 570-687 (800)
70 2d7d_A Uvrabc system protein B 99.8 3.8E-20 1.3E-24 194.5 17.8 112 253-386 444-555 (661)
71 3iuy_A Probable ATP-dependent 99.7 8.5E-18 2.9E-22 153.9 12.9 122 5-128 33-177 (228)
72 1q0u_A Bstdead; DEAD protein, 99.7 2E-17 6.7E-22 150.5 13.0 126 4-129 16-161 (219)
73 2oxc_A Probable ATP-dependent 99.7 1.4E-17 4.7E-22 152.7 11.5 125 5-129 37-177 (230)
74 1qde_A EIF4A, translation init 99.7 2.8E-17 9.5E-22 150.0 13.3 124 5-129 27-166 (224)
75 2gxq_A Heat resistant RNA depe 99.7 3.1E-17 1E-21 147.8 13.2 123 4-129 13-155 (207)
76 3ly5_A ATP-dependent RNA helic 99.7 7E-18 2.4E-22 157.7 9.1 165 6-213 68-257 (262)
77 3fe2_A Probable ATP-dependent 99.7 1.3E-17 4.3E-22 154.2 10.6 171 6-219 43-238 (242)
78 2pl3_A Probable ATP-dependent 99.7 1.3E-17 4.4E-22 153.6 10.5 124 4-128 37-181 (236)
79 1vec_A ATP-dependent RNA helic 99.7 3.5E-17 1.2E-21 147.3 13.1 125 5-129 16-157 (206)
80 3fmo_B ATP-dependent RNA helic 99.7 2E-17 6.7E-22 157.6 11.6 125 4-128 104-245 (300)
81 3ber_A Probable ATP-dependent 99.7 2.4E-17 8.1E-22 152.9 11.5 124 4-128 55-196 (249)
82 3bor_A Human initiation factor 99.7 3.6E-17 1.2E-21 150.7 12.1 123 6-129 44-184 (237)
83 1t6n_A Probable ATP-dependent 99.7 4.5E-16 1.5E-20 141.6 17.1 124 6-129 28-169 (220)
84 3dkp_A Probable ATP-dependent 99.7 8.4E-17 2.9E-21 149.0 11.9 122 7-129 44-186 (245)
85 1wrb_A DJVLGB; RNA helicase, D 99.7 1.1E-16 3.9E-21 148.8 10.8 121 7-128 38-184 (253)
86 2ipc_A Preprotein translocase 99.6 1.6E-13 5.6E-18 142.7 23.6 113 12-129 77-213 (997)
87 2vl7_A XPD; helicase, unknown 99.6 2E-14 6.8E-19 148.0 13.2 127 240-383 371-518 (540)
88 3b6e_A Interferon-induced heli 99.5 1.9E-14 6.5E-19 130.2 9.2 119 10-130 29-174 (216)
89 1z5z_A Helicase of the SNF2/RA 99.5 6.7E-15 2.3E-19 137.5 6.1 110 253-388 111-225 (271)
90 1rif_A DAR protein, DNA helica 99.4 8.2E-14 2.8E-18 131.6 5.1 113 13-130 112-237 (282)
91 2fz4_A DNA repair protein RAD2 99.4 6.2E-13 2.1E-17 121.9 8.6 109 12-130 91-204 (237)
92 3crv_A XPD/RAD3 related DNA he 99.3 3.5E-11 1.2E-15 124.3 17.0 173 192-382 316-527 (551)
93 3i4u_A ATP-dependent RNA helic 98.9 7.8E-10 2.7E-14 102.3 3.6 56 421-477 6-62 (270)
94 1w36_D RECD, exodeoxyribonucle 98.3 2.2E-06 7.6E-11 89.1 10.0 65 16-80 151-217 (608)
95 3upu_A ATP-dependent DNA helic 97.9 0.00039 1.3E-08 69.7 18.5 65 14-79 25-94 (459)
96 3e1s_A Exodeoxyribonuclease V, 97.9 2.6E-05 8.9E-10 80.2 9.9 64 13-78 188-251 (574)
97 4a15_A XPD helicase, ATP-depen 97.6 7.1E-05 2.4E-09 77.8 6.8 175 192-383 376-581 (620)
98 3kl4_A SRP54, signal recogniti 97.5 0.0007 2.4E-08 66.6 12.7 94 29-129 97-190 (433)
99 4a15_A XPD helicase, ATP-depen 97.5 0.0001 3.6E-09 76.6 7.1 67 13-82 2-74 (620)
100 2kjq_A DNAA-related protein; s 97.4 0.00011 3.7E-09 61.5 4.1 24 28-51 35-58 (149)
101 3ec2_A DNA replication protein 97.3 0.00041 1.4E-08 59.9 7.1 37 16-52 16-61 (180)
102 3te6_A Regulatory protein SIR3 97.2 0.0014 4.6E-08 61.9 10.2 26 28-53 44-69 (318)
103 2orw_A Thymidine kinase; TMTK, 97.2 0.00046 1.6E-08 59.9 6.3 40 28-69 2-41 (184)
104 2b8t_A Thymidine kinase; deoxy 97.2 0.00027 9.2E-09 63.2 4.9 41 27-69 10-50 (223)
105 4b3f_X DNA-binding protein smu 97.2 0.00048 1.6E-08 72.2 7.5 65 15-81 190-255 (646)
106 3dm5_A SRP54, signal recogniti 97.2 0.0025 8.7E-08 62.7 11.5 93 29-128 100-192 (443)
107 2w0m_A SSO2452; RECA, SSPF, un 97.1 0.0013 4.3E-08 59.1 8.7 29 25-53 19-47 (235)
108 2pt7_A CAG-ALFA; ATPase, prote 97.1 0.0011 3.8E-08 63.2 8.3 90 18-128 160-250 (330)
109 1vma_A Cell division protein F 97.1 0.0024 8.2E-08 60.0 10.0 107 29-144 104-211 (306)
110 3cpe_A Terminase, DNA packagin 97.0 0.0019 6.6E-08 66.8 9.7 73 12-84 161-233 (592)
111 2o0j_A Terminase, DNA packagin 97.0 0.0031 1.1E-07 61.1 10.5 71 12-82 161-231 (385)
112 2gk6_A Regulator of nonsense t 97.0 0.0011 3.8E-08 69.0 7.9 66 15-81 181-246 (624)
113 2px0_A Flagellar biosynthesis 96.9 0.0025 8.6E-08 59.7 8.7 87 28-128 104-192 (296)
114 3tui_C Methionine import ATP-b 96.9 0.0013 4.6E-08 63.0 6.9 48 100-147 163-212 (366)
115 1cr0_A DNA primase/helicase; R 96.9 0.0032 1.1E-07 59.0 9.1 38 17-54 23-60 (296)
116 1l8q_A Chromosomal replication 96.9 0.0048 1.6E-07 58.6 10.3 37 29-67 37-73 (324)
117 3e70_C DPA, signal recognition 96.8 0.0048 1.7E-07 58.5 10.0 94 28-129 128-222 (328)
118 2w58_A DNAI, primosome compone 96.8 0.0036 1.2E-07 54.9 8.4 24 30-53 55-78 (202)
119 2wjy_A Regulator of nonsense t 96.8 0.0021 7E-08 68.7 7.9 66 15-81 357-422 (800)
120 2xzl_A ATP-dependent helicase 96.8 0.0015 5E-08 69.9 6.7 66 15-81 361-426 (802)
121 1ls1_A Signal recognition part 96.8 0.0088 3E-07 55.9 11.3 93 28-128 97-190 (295)
122 3jvv_A Twitching mobility prot 96.8 0.0021 7.2E-08 61.8 6.8 28 25-52 119-146 (356)
123 3h4m_A Proteasome-activating n 96.7 0.0053 1.8E-07 57.0 9.2 26 27-52 49-74 (285)
124 2cvh_A DNA repair and recombin 96.7 0.00076 2.6E-08 60.0 3.1 27 25-51 16-42 (220)
125 1njg_A DNA polymerase III subu 96.7 0.014 4.8E-07 52.1 11.6 37 16-52 29-68 (250)
126 1xx6_A Thymidine kinase; NESG, 96.7 0.0015 5.1E-08 56.9 4.7 40 28-69 7-46 (191)
127 1z47_A CYSA, putative ABC-tran 96.6 0.0065 2.2E-07 58.1 9.1 48 99-146 144-193 (355)
128 3bos_A Putative DNA replicatio 96.6 0.0074 2.5E-07 54.2 9.2 24 28-51 51-74 (242)
129 3vkw_A Replicase large subunit 96.6 0.0028 9.7E-08 62.2 6.4 45 29-80 161-205 (446)
130 3b85_A Phosphate starvation-in 96.6 0.0017 5.9E-08 57.4 4.4 39 14-52 7-45 (208)
131 2j9r_A Thymidine kinase; TK1, 96.6 0.0049 1.7E-07 54.2 7.2 41 28-70 27-67 (214)
132 1fnn_A CDC6P, cell division co 96.5 0.011 3.8E-07 57.3 10.4 23 31-53 46-68 (389)
133 2chg_A Replication factor C sm 96.5 0.011 3.9E-07 52.0 9.6 36 16-51 23-60 (226)
134 2v9p_A Replication protein E1; 96.5 0.001 3.4E-08 62.4 2.4 38 16-53 113-150 (305)
135 3b9q_A Chloroplast SRP recepto 96.4 0.017 5.9E-07 54.0 10.3 26 28-53 99-124 (302)
136 3syl_A Protein CBBX; photosynt 96.4 0.011 3.7E-07 55.6 8.9 22 29-50 67-88 (309)
137 2z4s_A Chromosomal replication 96.3 0.016 5.5E-07 57.5 10.2 39 29-67 130-168 (440)
138 1sxj_A Activator 1 95 kDa subu 96.3 0.014 4.7E-07 59.3 9.8 25 29-53 77-101 (516)
139 2qen_A Walker-type ATPase; unk 96.3 0.071 2.4E-06 50.6 14.5 40 14-53 16-55 (350)
140 3cf0_A Transitional endoplasmi 96.2 0.017 5.7E-07 54.2 9.3 27 27-53 47-73 (301)
141 2zpa_A Uncharacterized protein 96.2 0.011 3.7E-07 61.0 8.5 59 15-78 176-236 (671)
142 3lfu_A DNA helicase II; SF1 he 96.2 0.0052 1.8E-07 64.4 6.3 70 14-85 9-80 (647)
143 2qz4_A Paraplegin; AAA+, SPG7, 96.2 0.013 4.4E-07 53.5 8.3 25 28-52 38-62 (262)
144 1htw_A HI0065; nucleotide-bind 96.2 0.0018 6.2E-08 54.4 2.2 36 18-53 22-57 (158)
145 2v1u_A Cell division control p 96.2 0.01 3.5E-07 57.5 7.9 25 28-52 43-67 (387)
146 2og2_A Putative signal recogni 96.2 0.025 8.6E-07 54.2 10.2 26 28-53 156-181 (359)
147 2r2a_A Uncharacterized protein 96.1 0.021 7.2E-07 49.9 8.9 22 31-52 7-28 (199)
148 1d2n_A N-ethylmaleimide-sensit 96.1 0.0058 2E-07 56.4 5.6 23 30-52 65-87 (272)
149 1w4r_A Thymidine kinase; type 96.1 0.0041 1.4E-07 53.8 3.9 39 28-68 19-57 (195)
150 1vpl_A ABC transporter, ATP-bi 96.1 9.1E-05 3.1E-09 68.0 -7.0 51 1-51 13-63 (256)
151 2eyu_A Twitching motility prot 96.1 0.0027 9.2E-08 58.3 2.8 34 17-52 15-48 (261)
152 2d2e_A SUFC protein; ABC-ATPas 96.0 0.0001 3.5E-09 67.5 -6.8 48 4-51 4-51 (250)
153 1z6g_A Guanylate kinase; struc 96.0 0.003 1E-07 56.3 3.1 34 19-52 13-46 (218)
154 1zu4_A FTSY; GTPase, signal re 96.0 0.012 4E-07 55.7 7.2 25 29-53 105-129 (320)
155 2qby_A CDC6 homolog 1, cell di 96.0 0.01 3.5E-07 57.4 7.0 24 29-52 45-68 (386)
156 2gza_A Type IV secretion syste 96.0 0.0044 1.5E-07 59.8 4.3 34 20-53 166-199 (361)
157 1znw_A Guanylate kinase, GMP k 96.0 0.0038 1.3E-07 55.1 3.5 28 24-51 15-42 (207)
158 3eie_A Vacuolar protein sortin 96.0 0.013 4.4E-07 55.5 7.4 25 29-53 51-75 (322)
159 2qby_B CDC6 homolog 3, cell di 96.0 0.013 4.4E-07 56.9 7.5 24 29-52 45-68 (384)
160 1yqt_A RNAse L inhibitor; ATP- 96.0 0.0096 3.3E-07 60.6 6.8 119 27-146 310-449 (538)
161 2cbz_A Multidrug resistance-as 96.0 0.00014 4.7E-09 66.0 -6.3 49 3-51 3-53 (237)
162 3vfd_A Spastin; ATPase, microt 95.9 0.023 7.8E-07 55.4 9.1 24 29-52 148-171 (389)
163 3bk7_A ABC transporter ATP-bin 95.9 0.019 6.4E-07 59.3 8.8 116 26-146 379-519 (607)
164 3ozx_A RNAse L inhibitor; ATP 95.9 0.011 3.8E-07 60.1 6.9 120 26-146 291-433 (538)
165 3rlf_A Maltose/maltodextrin im 95.9 0.00015 5.1E-09 70.1 -6.7 51 1-51 1-51 (381)
166 1kgd_A CASK, peripheral plasma 95.9 0.005 1.7E-07 53.0 3.6 26 27-52 3-28 (180)
167 3b9p_A CG5977-PA, isoform A; A 95.9 0.015 5.2E-07 54.2 7.2 26 28-53 53-78 (297)
168 2qp9_X Vacuolar protein sortin 95.8 0.014 4.6E-07 56.2 6.9 25 29-53 84-108 (355)
169 3lnc_A Guanylate kinase, GMP k 95.8 0.0018 6.3E-08 58.2 0.7 34 17-50 15-48 (231)
170 4g1u_C Hemin import ATP-bindin 95.8 0.00014 4.8E-09 67.1 -6.9 48 4-51 12-59 (266)
171 2oap_1 GSPE-2, type II secreti 95.8 0.0066 2.3E-07 61.3 4.7 35 17-51 248-282 (511)
172 1g6h_A High-affinity branched- 95.8 0.00014 4.8E-09 66.8 -6.9 47 5-51 9-55 (257)
173 2ffh_A Protein (FFH); SRP54, s 95.8 0.079 2.7E-06 51.9 12.2 92 29-127 98-189 (425)
174 3tr0_A Guanylate kinase, GMP k 95.8 0.0051 1.8E-07 53.9 3.4 27 26-52 4-30 (205)
175 2orv_A Thymidine kinase; TP4A 95.8 0.01 3.5E-07 52.7 5.2 41 28-70 18-58 (234)
176 3nwj_A ATSK2; P loop, shikimat 95.8 0.0051 1.7E-07 55.9 3.3 51 3-53 17-72 (250)
177 2r6a_A DNAB helicase, replicat 95.7 0.026 9E-07 56.2 8.6 36 19-54 193-228 (454)
178 1j8m_F SRP54, signal recogniti 95.7 0.016 5.5E-07 54.1 6.5 93 29-128 98-190 (297)
179 3u61_B DNA polymerase accessor 95.7 0.051 1.7E-06 51.3 10.2 36 17-52 33-71 (324)
180 4gp7_A Metallophosphoesterase; 95.7 0.003 1E-07 53.9 1.4 23 26-48 6-28 (171)
181 1lvg_A Guanylate kinase, GMP k 95.7 0.0052 1.8E-07 53.8 2.9 24 28-51 3-26 (198)
182 1jr3_A DNA polymerase III subu 95.6 0.077 2.6E-06 51.0 11.5 36 17-52 23-61 (373)
183 1sxj_E Activator 1 40 kDa subu 95.6 0.047 1.6E-06 52.2 9.9 21 31-51 38-58 (354)
184 1iqp_A RFCS; clamp loader, ext 95.6 0.031 1E-06 52.7 8.4 35 17-51 32-68 (327)
185 3lda_A DNA repair protein RAD5 95.6 0.0056 1.9E-07 59.7 3.1 28 27-54 176-203 (400)
186 2it1_A 362AA long hypothetical 95.6 0.00029 9.9E-09 67.8 -6.0 50 1-50 1-50 (362)
187 3fvq_A Fe(3+) IONS import ATP- 95.6 0.00022 7.7E-09 68.3 -6.9 49 3-51 4-52 (359)
188 3tif_A Uncharacterized ABC tra 95.5 0.0048 1.7E-07 55.6 2.3 28 24-51 26-53 (235)
189 2yyz_A Sugar ABC transporter, 95.5 0.00025 8.7E-09 68.1 -6.7 49 3-51 3-51 (359)
190 2yhs_A FTSY, cell division pro 95.5 0.047 1.6E-06 54.3 9.3 25 28-52 292-316 (503)
191 3pfi_A Holliday junction ATP-d 95.5 0.036 1.2E-06 52.7 8.3 23 30-52 56-78 (338)
192 1zp6_A Hypothetical protein AT 95.5 0.0054 1.9E-07 53.1 2.2 28 25-52 5-32 (191)
193 1v43_A Sugar-binding transport 95.4 0.00029 1E-08 68.0 -6.5 49 3-51 11-59 (372)
194 3j16_B RLI1P; ribosome recycli 95.4 0.087 3E-06 54.3 11.4 48 99-146 466-515 (608)
195 1rj9_A FTSY, signal recognitio 95.4 0.035 1.2E-06 52.0 7.7 26 28-53 101-126 (304)
196 1xwi_A SKD1 protein; VPS4B, AA 95.4 0.027 9.3E-07 53.3 7.1 25 29-53 45-69 (322)
197 2j41_A Guanylate kinase; GMP, 95.4 0.0088 3E-07 52.4 3.4 27 26-52 3-29 (207)
198 1s96_A Guanylate kinase, GMP k 95.4 0.0096 3.3E-07 53.0 3.6 28 25-52 12-39 (219)
199 3tau_A Guanylate kinase, GMP k 95.3 0.0098 3.4E-07 52.4 3.6 26 27-52 6-31 (208)
200 4a1f_A DNAB helicase, replicat 95.3 0.02 6.7E-07 54.4 5.8 48 17-66 34-81 (338)
201 2pcj_A ABC transporter, lipopr 95.3 0.0063 2.1E-07 54.4 2.2 47 5-51 6-52 (224)
202 1a5t_A Delta prime, HOLB; zinc 95.3 0.062 2.1E-06 51.1 9.4 31 22-52 14-47 (334)
203 1g29_1 MALK, maltose transport 95.3 0.0003 1E-08 68.0 -6.9 47 4-50 4-50 (372)
204 3a00_A Guanylate kinase, GMP k 95.3 0.0084 2.9E-07 51.8 2.9 24 29-52 1-24 (186)
205 2ehv_A Hypothetical protein PH 95.3 0.0068 2.3E-07 54.9 2.4 27 25-51 26-52 (251)
206 3hgt_A HDA1 complex subunit 3; 95.3 0.05 1.7E-06 50.9 8.2 108 253-391 124-241 (328)
207 3gfo_A Cobalt import ATP-bindi 95.3 0.0066 2.2E-07 56.1 2.2 49 3-51 7-56 (275)
208 2q6t_A DNAB replication FORK h 95.3 0.053 1.8E-06 53.8 9.0 39 26-65 197-235 (444)
209 1oxx_K GLCV, glucose, ABC tran 95.2 0.00026 8.9E-09 68.0 -7.6 50 1-50 1-52 (353)
210 2ce7_A Cell division protein F 95.2 0.014 4.7E-07 58.3 4.5 25 29-53 49-73 (476)
211 3d8b_A Fidgetin-like protein 1 95.2 0.02 6.7E-07 55.2 5.5 26 28-53 116-141 (357)
212 1uaa_A REP helicase, protein ( 95.2 0.018 6.3E-07 60.5 5.7 69 15-85 3-73 (673)
213 3ney_A 55 kDa erythrocyte memb 95.2 0.012 4.1E-07 51.2 3.6 26 27-52 17-42 (197)
214 3e2i_A Thymidine kinase; Zn-bi 95.2 0.015 5.2E-07 51.0 4.1 42 27-70 26-67 (219)
215 3vaa_A Shikimate kinase, SK; s 95.2 0.012 4.1E-07 51.4 3.6 35 19-53 15-49 (199)
216 2fna_A Conserved hypothetical 95.2 0.16 5.3E-06 48.3 11.8 35 17-53 20-54 (357)
217 3pvs_A Replication-associated 95.2 0.015 5.2E-07 57.7 4.6 32 21-52 40-73 (447)
218 4f4c_A Multidrug resistance pr 95.1 0.033 1.1E-06 63.0 7.8 34 19-52 434-467 (1321)
219 1sgw_A Putative ABC transporte 95.1 0.0068 2.3E-07 53.7 1.8 29 23-51 29-57 (214)
220 2pze_A Cystic fibrosis transme 95.1 0.0079 2.7E-07 54.0 2.2 30 22-51 27-56 (229)
221 4b4t_J 26S protease regulatory 95.1 0.017 5.7E-07 56.0 4.5 26 28-53 181-206 (405)
222 1p9r_A General secretion pathw 95.1 0.02 6.8E-07 56.2 5.1 27 27-53 165-191 (418)
223 1sq5_A Pantothenate kinase; P- 95.0 0.018 6.1E-07 54.2 4.6 26 27-52 78-103 (308)
224 1b0u_A Histidine permease; ABC 95.0 0.0086 2.9E-07 54.9 2.3 47 5-51 8-54 (262)
225 1ji0_A ABC transporter; ATP bi 95.0 0.0084 2.9E-07 54.2 2.2 30 22-51 25-54 (240)
226 2ff7_A Alpha-hemolysin translo 95.0 0.0084 2.9E-07 54.5 2.2 30 23-52 29-58 (247)
227 2zu0_C Probable ATP-dependent 95.0 0.0099 3.4E-07 54.7 2.6 31 22-52 39-69 (267)
228 2olj_A Amino acid ABC transpor 95.0 0.0091 3.1E-07 54.7 2.3 47 5-51 26-72 (263)
229 1pjr_A PCRA; DNA repair, DNA r 95.0 0.025 8.6E-07 59.9 6.0 69 14-84 11-81 (724)
230 2qm8_A GTPase/ATPase; G protei 95.0 0.005 1.7E-07 58.8 0.5 32 20-51 46-77 (337)
231 2npi_A Protein CLP1; CLP1-PCF1 95.0 0.011 3.7E-07 58.9 2.9 42 4-51 119-160 (460)
232 2qi9_C Vitamin B12 import ATP- 94.9 0.0097 3.3E-07 54.1 2.2 28 25-52 22-49 (249)
233 2ghi_A Transport protein; mult 94.9 0.0098 3.3E-07 54.5 2.3 31 22-52 39-69 (260)
234 4f4c_A Multidrug resistance pr 94.9 0.029 9.8E-07 63.5 6.5 34 18-51 1094-1127(1321)
235 3n70_A Transport activator; si 94.9 0.02 6.8E-07 47.1 4.0 31 20-50 15-45 (145)
236 1mv5_A LMRA, multidrug resista 94.9 0.0087 3E-07 54.2 1.8 30 22-51 21-50 (243)
237 2j37_W Signal recognition part 94.9 0.26 9E-06 49.3 12.7 23 31-53 103-125 (504)
238 2ihy_A ABC transporter, ATP-bi 94.9 0.01 3.5E-07 55.0 2.2 31 21-51 39-69 (279)
239 3c8u_A Fructokinase; YP_612366 94.8 0.013 4.3E-07 51.7 2.7 24 27-50 20-43 (208)
240 2nq2_C Hypothetical ABC transp 94.8 0.011 3.6E-07 54.0 2.2 30 22-51 24-53 (253)
241 2ixe_A Antigen peptide transpo 94.8 0.011 3.6E-07 54.6 2.3 31 21-51 37-67 (271)
242 3hu3_A Transitional endoplasmi 94.8 0.059 2E-06 54.1 7.8 25 28-52 237-261 (489)
243 3u4q_A ATP-dependent helicase/ 94.8 0.03 1E-06 63.0 6.2 70 12-83 8-81 (1232)
244 3aez_A Pantothenate kinase; tr 94.8 0.024 8.4E-07 53.3 4.7 26 26-51 87-112 (312)
245 2jeo_A Uridine-cytidine kinase 94.8 0.013 4.6E-07 53.0 2.8 34 18-51 14-47 (245)
246 2yz2_A Putative ABC transporte 94.7 0.011 3.9E-07 54.3 2.3 30 22-51 26-55 (266)
247 1hqc_A RUVB; extended AAA-ATPa 94.7 0.053 1.8E-06 51.1 7.1 24 29-52 38-61 (324)
248 2zan_A Vacuolar protein sortin 94.7 0.052 1.8E-06 53.8 7.3 26 28-53 166-191 (444)
249 4eun_A Thermoresistant glucoki 94.7 0.019 6.5E-07 50.1 3.6 26 27-52 27-52 (200)
250 3co5_A Putative two-component 94.7 0.019 6.6E-07 47.1 3.4 31 18-48 16-46 (143)
251 4a74_A DNA repair and recombin 94.7 0.011 3.7E-07 52.8 2.0 28 25-52 21-48 (231)
252 1sxj_B Activator 1 37 kDa subu 94.7 0.061 2.1E-06 50.5 7.3 35 17-51 28-64 (323)
253 2ewv_A Twitching motility prot 94.7 0.012 4.3E-07 56.8 2.4 27 26-52 133-159 (372)
254 3nh6_A ATP-binding cassette SU 94.6 0.0098 3.4E-07 55.7 1.6 30 22-51 73-102 (306)
255 1ye8_A Protein THEP1, hypothet 94.6 0.02 6.7E-07 49.1 3.3 22 31-52 2-23 (178)
256 2gno_A DNA polymerase III, gam 94.6 0.085 2.9E-06 49.4 7.9 29 22-50 9-39 (305)
257 3tqc_A Pantothenate kinase; bi 94.6 0.059 2E-06 50.8 6.8 33 19-51 76-114 (321)
258 1n0w_A DNA repair protein RAD5 94.6 0.027 9.3E-07 50.6 4.3 28 26-53 21-48 (243)
259 3asz_A Uridine kinase; cytidin 94.5 0.018 6.1E-07 50.7 3.0 25 27-51 4-28 (211)
260 1tf7_A KAIC; homohexamer, hexa 94.5 0.05 1.7E-06 55.3 6.6 96 25-125 277-378 (525)
261 1in4_A RUVB, holliday junction 94.5 0.021 7.1E-07 54.4 3.5 40 13-52 28-74 (334)
262 2bbs_A Cystic fibrosis transme 94.4 0.015 5.3E-07 54.0 2.2 26 26-51 61-86 (290)
263 3cmu_A Protein RECA, recombina 94.4 0.029 9.8E-07 64.9 4.8 39 28-68 1426-1464(2050)
264 1jbk_A CLPB protein; beta barr 94.3 0.056 1.9E-06 46.1 5.7 38 15-52 27-66 (195)
265 1kag_A SKI, shikimate kinase I 94.3 0.023 7.8E-07 48.2 3.1 26 28-53 3-28 (173)
266 3uie_A Adenylyl-sulfate kinase 94.3 0.026 8.9E-07 49.2 3.5 31 22-52 18-48 (200)
267 2i3b_A HCR-ntpase, human cance 94.3 0.023 7.9E-07 49.2 3.1 25 29-53 1-25 (189)
268 2bdt_A BH3686; alpha-beta prot 94.3 0.019 6.4E-07 49.6 2.4 23 29-51 2-24 (189)
269 2xxa_A Signal recognition part 94.2 0.2 6.9E-06 49.3 10.1 91 30-127 101-192 (433)
270 4b4t_H 26S protease regulatory 94.2 0.023 8E-07 55.9 3.3 26 28-53 242-267 (467)
271 2qor_A Guanylate kinase; phosp 94.2 0.025 8.7E-07 49.5 3.1 28 26-53 9-36 (204)
272 2onk_A Molybdate/tungstate ABC 94.2 0.02 6.8E-07 51.7 2.5 26 25-51 21-46 (240)
273 1knq_A Gluconate kinase; ALFA/ 94.2 0.025 8.4E-07 48.1 2.9 24 28-51 7-30 (175)
274 4b4t_I 26S protease regulatory 94.0 0.042 1.4E-06 53.5 4.5 25 29-53 216-240 (437)
275 2dr3_A UPF0273 protein PH0284; 94.0 0.049 1.7E-06 49.0 4.8 28 26-53 20-47 (247)
276 2pjz_A Hypothetical protein ST 94.0 0.02 7E-07 52.4 2.2 28 24-52 26-53 (263)
277 2v3c_C SRP54, signal recogniti 94.0 0.045 1.5E-06 53.9 4.7 24 30-53 100-123 (432)
278 3d31_A Sulfate/molybdate ABC t 93.9 0.02 6.7E-07 54.7 2.0 29 23-51 20-48 (348)
279 2p65_A Hypothetical protein PF 93.8 0.06 2.1E-06 45.8 4.8 37 16-52 28-66 (187)
280 3gd7_A Fusion complex of cysti 93.8 0.026 8.8E-07 54.8 2.5 32 20-51 38-69 (390)
281 1w5s_A Origin recognition comp 93.8 0.042 1.4E-06 53.7 4.1 24 29-52 50-75 (412)
282 1tq4_A IIGP1, interferon-induc 93.6 0.066 2.3E-06 52.3 5.2 35 17-51 37-91 (413)
283 2zts_A Putative uncharacterize 93.5 0.032 1.1E-06 50.3 2.6 29 26-54 27-55 (251)
284 2obl_A ESCN; ATPase, hydrolase 93.5 0.017 5.8E-07 55.3 0.7 47 5-52 47-94 (347)
285 3b5x_A Lipid A export ATP-bind 93.5 0.0075 2.6E-07 62.2 -1.8 36 17-52 357-392 (582)
286 2bbw_A Adenylate kinase 4, AK4 93.5 0.045 1.5E-06 49.5 3.6 25 28-52 26-50 (246)
287 1qvr_A CLPB protein; coiled co 93.5 0.21 7E-06 54.0 9.2 36 17-52 177-214 (854)
288 3trf_A Shikimate kinase, SK; a 93.4 0.047 1.6E-06 46.7 3.4 25 29-53 5-29 (185)
289 1kht_A Adenylate kinase; phosp 93.4 0.048 1.6E-06 46.8 3.5 25 28-52 2-26 (192)
290 2dpy_A FLII, flagellum-specifi 93.4 0.023 7.8E-07 56.2 1.5 49 4-53 132-181 (438)
291 1pui_A ENGB, probable GTP-bind 93.4 0.0082 2.8E-07 52.7 -1.5 46 1-49 1-46 (210)
292 2qag_B Septin-6, protein NEDD5 93.4 0.032 1.1E-06 54.5 2.5 40 11-51 23-64 (427)
293 1qhx_A CPT, protein (chloramph 93.4 0.051 1.7E-06 46.2 3.6 26 28-53 2-27 (178)
294 1ex7_A Guanylate kinase; subst 93.4 0.044 1.5E-06 47.2 3.1 23 30-52 2-24 (186)
295 3cf2_A TER ATPase, transitiona 93.3 0.11 3.6E-06 55.2 6.5 25 29-53 238-262 (806)
296 3a8t_A Adenylate isopentenyltr 93.2 0.045 1.5E-06 51.7 3.1 24 28-51 39-62 (339)
297 3lw7_A Adenylate kinase relate 93.2 0.051 1.7E-06 45.8 3.2 20 30-49 2-21 (179)
298 3cm0_A Adenylate kinase; ATP-b 93.1 0.041 1.4E-06 47.2 2.6 26 28-53 3-28 (186)
299 3kb2_A SPBC2 prophage-derived 93.1 0.053 1.8E-06 45.6 3.2 23 31-53 3-25 (173)
300 2ze6_A Isopentenyl transferase 93.1 0.045 1.5E-06 49.8 2.8 21 31-51 3-23 (253)
301 4e22_A Cytidylate kinase; P-lo 93.0 0.058 2E-06 49.0 3.5 27 27-53 25-51 (252)
302 3exa_A TRNA delta(2)-isopenten 93.0 0.05 1.7E-06 50.7 3.1 23 29-51 3-25 (322)
303 2f1r_A Molybdopterin-guanine d 93.0 0.035 1.2E-06 47.1 1.9 23 30-52 3-25 (171)
304 1nlf_A Regulatory protein REPA 93.0 0.04 1.4E-06 50.9 2.4 27 25-51 26-52 (279)
305 2qmh_A HPR kinase/phosphorylas 93.0 0.051 1.7E-06 47.1 2.8 24 28-51 33-56 (205)
306 2qt1_A Nicotinamide riboside k 92.9 0.041 1.4E-06 48.2 2.3 29 23-51 15-43 (207)
307 1tf7_A KAIC; homohexamer, hexa 92.9 0.03 1E-06 56.9 1.6 36 16-51 25-61 (525)
308 1cke_A CK, MSSA, protein (cyti 92.9 0.061 2.1E-06 47.7 3.4 25 29-53 5-29 (227)
309 2bwj_A Adenylate kinase 5; pho 92.9 0.066 2.3E-06 46.3 3.6 29 25-53 8-36 (199)
310 1y63_A LMAJ004144AAA protein; 92.9 0.065 2.2E-06 46.0 3.5 25 28-52 9-33 (184)
311 3kta_A Chromosome segregation 92.9 0.066 2.3E-06 45.7 3.5 21 31-51 28-48 (182)
312 1g5t_A COB(I)alamin adenosyltr 92.8 0.24 8.2E-06 42.7 6.9 40 28-69 27-66 (196)
313 3umf_A Adenylate kinase; rossm 92.8 0.053 1.8E-06 48.0 2.8 30 25-54 25-54 (217)
314 1gm5_A RECG; helicase, replica 92.8 0.13 4.3E-06 54.7 6.2 78 254-336 417-495 (780)
315 1rz3_A Hypothetical protein rb 92.8 0.11 3.7E-06 45.3 4.8 24 28-51 21-44 (201)
316 1svm_A Large T antigen; AAA+ f 92.7 0.073 2.5E-06 51.4 3.8 29 23-51 163-191 (377)
317 1nij_A Hypothetical protein YJ 92.6 0.076 2.6E-06 50.1 3.8 23 30-52 5-27 (318)
318 2pez_A Bifunctional 3'-phospho 92.6 0.064 2.2E-06 45.7 3.1 24 28-51 4-27 (179)
319 3iij_A Coilin-interacting nucl 92.6 0.065 2.2E-06 45.6 3.1 26 27-52 9-34 (180)
320 1f2t_A RAD50 ABC-ATPase; DNA d 92.6 0.069 2.3E-06 44.2 3.1 21 30-50 24-44 (149)
321 2qgz_A Helicase loader, putati 92.6 0.13 4.3E-06 48.3 5.2 24 29-52 152-175 (308)
322 2c95_A Adenylate kinase 1; tra 92.6 0.1 3.5E-06 44.9 4.3 28 26-53 6-33 (196)
323 2yv5_A YJEQ protein; hydrolase 92.5 0.1 3.5E-06 48.8 4.5 28 23-50 159-186 (302)
324 3sop_A Neuronal-specific septi 92.5 0.064 2.2E-06 49.3 3.1 22 31-52 4-25 (270)
325 3k1j_A LON protease, ATP-depen 92.5 0.21 7.1E-06 51.6 7.2 40 13-52 44-83 (604)
326 1sxj_C Activator 1 40 kDa subu 92.5 0.13 4.6E-06 48.8 5.4 36 16-51 31-68 (340)
327 4ag6_A VIRB4 ATPase, type IV s 92.4 0.078 2.7E-06 51.6 3.8 41 28-70 34-74 (392)
328 2v54_A DTMP kinase, thymidylat 92.4 0.083 2.8E-06 45.9 3.6 25 28-52 3-27 (204)
329 1ly1_A Polynucleotide kinase; 92.4 0.075 2.5E-06 45.1 3.2 22 30-51 3-24 (181)
330 2rhm_A Putative kinase; P-loop 92.4 0.068 2.3E-06 46.0 3.0 25 28-52 4-28 (193)
331 3t61_A Gluconokinase; PSI-biol 92.3 0.068 2.3E-06 46.5 2.8 24 29-52 18-41 (202)
332 1gvn_B Zeta; postsegregational 92.1 0.12 4.2E-06 47.8 4.5 24 29-52 33-56 (287)
333 1m7g_A Adenylylsulfate kinase; 92.1 0.094 3.2E-06 46.0 3.6 34 17-51 14-47 (211)
334 2r44_A Uncharacterized protein 92.1 0.12 4E-06 49.0 4.4 38 15-52 32-69 (331)
335 3foz_A TRNA delta(2)-isopenten 92.1 0.076 2.6E-06 49.4 3.0 23 30-52 11-33 (316)
336 1yqt_A RNAse L inhibitor; ATP- 92.1 0.064 2.2E-06 54.5 2.7 27 25-51 43-69 (538)
337 1e9r_A Conjugal transfer prote 92.1 0.079 2.7E-06 52.4 3.3 43 28-72 52-94 (437)
338 1v5w_A DMC1, meiotic recombina 92.0 0.11 3.7E-06 49.6 4.2 29 27-55 120-148 (343)
339 2vp4_A Deoxynucleoside kinase; 92.0 0.063 2.1E-06 48.0 2.3 25 27-51 18-42 (230)
340 1pzn_A RAD51, DNA repair and r 92.0 0.079 2.7E-06 50.6 3.2 28 26-53 128-155 (349)
341 1zd8_A GTP:AMP phosphotransfer 92.0 0.11 3.7E-06 46.2 3.8 27 27-53 5-31 (227)
342 1tev_A UMP-CMP kinase; ploop, 92.0 0.083 2.8E-06 45.4 3.0 24 29-52 3-26 (196)
343 2bjv_A PSP operon transcriptio 91.9 0.12 4.1E-06 47.1 4.2 27 26-52 26-52 (265)
344 1lv7_A FTSH; alpha/beta domain 91.9 0.17 5.7E-06 45.9 5.0 24 29-52 45-68 (257)
345 1ofh_A ATP-dependent HSL prote 91.8 0.16 5.6E-06 47.2 5.1 24 29-52 50-73 (310)
346 1ixz_A ATP-dependent metallopr 91.8 0.039 1.3E-06 50.1 0.7 24 30-53 50-73 (254)
347 3b60_A Lipid A export ATP-bind 91.8 0.061 2.1E-06 55.4 2.3 31 21-51 361-391 (582)
348 3sr0_A Adenylate kinase; phosp 91.8 0.098 3.3E-06 45.8 3.3 24 31-54 2-25 (206)
349 2yvu_A Probable adenylyl-sulfa 91.8 0.091 3.1E-06 45.0 3.1 25 28-52 12-36 (186)
350 2if2_A Dephospho-COA kinase; a 91.8 0.098 3.3E-06 45.5 3.3 21 31-51 3-23 (204)
351 3tlx_A Adenylate kinase 2; str 91.8 0.12 4.2E-06 46.5 4.0 26 28-53 28-53 (243)
352 2rcn_A Probable GTPase ENGC; Y 91.7 0.15 5E-06 48.7 4.6 27 26-52 212-238 (358)
353 3hr8_A Protein RECA; alpha and 91.7 0.045 1.5E-06 52.4 1.0 39 27-67 59-97 (356)
354 2d7d_A Uvrabc system protein B 91.7 0.3 1E-05 51.0 7.3 71 10-85 8-83 (661)
355 3nbx_X ATPase RAVA; AAA+ ATPas 91.7 0.16 5.6E-06 50.9 5.1 41 12-52 24-64 (500)
356 1jjv_A Dephospho-COA kinase; P 91.6 0.099 3.4E-06 45.6 3.1 21 31-51 4-24 (206)
357 2plr_A DTMP kinase, probable t 91.6 0.096 3.3E-06 45.7 3.1 27 28-54 3-29 (213)
358 2z43_A DNA repair and recombin 91.6 0.13 4.3E-06 48.7 4.0 28 27-54 105-132 (324)
359 3hws_A ATP-dependent CLP prote 91.6 0.19 6.7E-06 48.2 5.4 26 28-53 50-75 (363)
360 1lw7_A Transcriptional regulat 91.5 0.084 2.9E-06 50.8 2.7 28 25-52 164-193 (365)
361 3bh0_A DNAB-like replicative h 91.5 0.12 4.1E-06 48.7 3.7 45 20-66 59-103 (315)
362 2wwf_A Thymidilate kinase, put 91.5 0.12 4E-06 45.3 3.4 25 28-52 9-33 (212)
363 1zuh_A Shikimate kinase; alpha 91.4 0.13 4.5E-06 43.1 3.6 24 30-53 8-31 (168)
364 1aky_A Adenylate kinase; ATP:A 91.4 0.12 4.3E-06 45.5 3.6 26 28-53 3-28 (220)
365 4fcw_A Chaperone protein CLPB; 91.4 0.16 5.3E-06 47.5 4.4 39 14-52 21-70 (311)
366 3qf4_B Uncharacterized ABC tra 91.4 0.064 2.2E-06 55.4 1.8 31 21-51 373-403 (598)
367 3fb4_A Adenylate kinase; psych 91.4 0.12 3.9E-06 45.5 3.3 23 31-53 2-24 (216)
368 3dl0_A Adenylate kinase; phosp 91.3 0.12 4.3E-06 45.3 3.5 23 31-53 2-24 (216)
369 1u0l_A Probable GTPase ENGC; p 91.3 0.15 5E-06 47.7 4.1 29 23-51 163-191 (301)
370 2jaq_A Deoxyguanosine kinase; 91.3 0.12 4.2E-06 44.8 3.3 23 31-53 2-24 (205)
371 4a82_A Cystic fibrosis transme 91.3 0.068 2.3E-06 55.0 1.9 30 21-50 359-388 (578)
372 3qf7_A RAD50; ABC-ATPase, ATPa 91.2 0.1 3.5E-06 50.2 3.0 20 31-50 25-44 (365)
373 1nn5_A Similar to deoxythymidy 91.2 0.13 4.5E-06 45.0 3.5 26 27-52 7-32 (215)
374 2cdn_A Adenylate kinase; phosp 91.2 0.14 4.6E-06 44.5 3.6 25 29-53 20-44 (201)
375 1nks_A Adenylate kinase; therm 91.2 0.12 4.1E-06 44.3 3.2 22 31-52 3-24 (194)
376 1np6_A Molybdopterin-guanine d 91.2 0.13 4.6E-06 43.6 3.3 23 30-52 7-29 (174)
377 3j16_B RLI1P; ribosome recycli 91.2 0.092 3.1E-06 54.1 2.7 28 25-52 99-126 (608)
378 2zr9_A Protein RECA, recombina 91.1 0.098 3.3E-06 50.0 2.7 28 27-54 59-86 (349)
379 1iy2_A ATP-dependent metallopr 91.1 0.051 1.7E-06 50.1 0.7 24 30-53 74-97 (278)
380 3d3q_A TRNA delta(2)-isopenten 91.1 0.11 3.9E-06 49.0 3.1 23 30-52 8-30 (340)
381 1via_A Shikimate kinase; struc 91.1 0.11 3.9E-06 43.9 2.9 23 31-53 6-28 (175)
382 3crm_A TRNA delta(2)-isopenten 91.1 0.12 4.1E-06 48.6 3.2 23 30-52 6-28 (323)
383 2yl4_A ATP-binding cassette SU 91.1 0.065 2.2E-06 55.3 1.5 31 22-52 363-393 (595)
384 1zak_A Adenylate kinase; ATP:A 91.0 0.11 3.9E-06 45.9 2.8 26 28-53 4-29 (222)
385 3bk7_A ABC transporter ATP-bin 91.0 0.089 3E-06 54.2 2.4 28 25-52 113-140 (607)
386 1xjc_A MOBB protein homolog; s 90.9 0.15 5.1E-06 43.0 3.3 23 30-52 5-27 (169)
387 1odf_A YGR205W, hypothetical 3 90.9 0.12 4.2E-06 47.9 3.1 22 29-50 31-52 (290)
388 2ius_A DNA translocase FTSK; n 90.8 0.22 7.6E-06 49.9 5.0 25 27-51 165-189 (512)
389 4eaq_A DTMP kinase, thymidylat 90.7 0.27 9.3E-06 43.7 5.2 26 28-53 25-50 (229)
390 2vli_A Antibiotic resistance p 90.7 0.13 4.5E-06 43.7 2.9 26 28-53 4-29 (183)
391 3ozx_A RNAse L inhibitor; ATP 90.6 0.11 3.8E-06 52.7 2.7 26 26-51 22-47 (538)
392 1e6c_A Shikimate kinase; phosp 90.5 0.14 4.7E-06 43.1 2.9 24 30-53 3-26 (173)
393 3qf4_A ABC transporter, ATP-bi 90.5 0.071 2.4E-06 54.9 1.2 29 22-50 362-390 (587)
394 2x8a_A Nuclear valosin-contain 90.5 0.16 5.3E-06 46.8 3.4 23 30-52 45-67 (274)
395 1gtv_A TMK, thymidylate kinase 90.5 0.082 2.8E-06 46.3 1.4 22 31-52 2-23 (214)
396 1ukz_A Uridylate kinase; trans 90.4 0.17 5.7E-06 44.0 3.4 24 30-53 16-39 (203)
397 3be4_A Adenylate kinase; malar 90.3 0.18 6.2E-06 44.4 3.5 25 29-53 5-29 (217)
398 2i1q_A DNA repair and recombin 90.2 0.19 6.6E-06 47.3 3.9 27 27-53 96-122 (322)
399 1qf9_A UMP/CMP kinase, protein 90.2 0.16 5.5E-06 43.4 3.1 24 30-53 7-30 (194)
400 2p67_A LAO/AO transport system 90.2 0.062 2.1E-06 51.2 0.4 27 26-52 53-79 (341)
401 3io5_A Recombination and repai 90.2 0.072 2.5E-06 49.7 0.8 41 28-69 28-68 (333)
402 2iyv_A Shikimate kinase, SK; t 90.1 0.16 5.6E-06 43.2 3.0 24 30-53 3-26 (184)
403 3eph_A TRNA isopentenyltransfe 90.1 0.15 5.2E-06 49.3 3.0 21 30-50 3-23 (409)
404 2eyq_A TRCF, transcription-rep 90.1 0.93 3.2E-05 50.5 9.7 79 253-336 651-730 (1151)
405 3qks_A DNA double-strand break 90.1 0.18 6.1E-06 44.0 3.3 22 29-50 23-44 (203)
406 2z0h_A DTMP kinase, thymidylat 90.0 0.17 5.9E-06 43.5 3.1 22 31-52 2-23 (197)
407 1e4v_A Adenylate kinase; trans 90.0 0.17 5.7E-06 44.5 3.1 23 31-53 2-24 (214)
408 2pt5_A Shikimate kinase, SK; a 90.0 0.19 6.6E-06 42.0 3.3 23 31-53 2-24 (168)
409 2pbr_A DTMP kinase, thymidylat 90.0 0.18 6.3E-06 43.2 3.3 22 31-52 2-23 (195)
410 1ak2_A Adenylate kinase isoenz 90.0 0.2 6.7E-06 44.7 3.6 26 28-53 15-40 (233)
411 1uf9_A TT1252 protein; P-loop, 89.9 0.17 5.9E-06 43.7 3.0 23 30-52 9-31 (203)
412 3bgw_A DNAB-like replicative h 89.7 0.19 6.4E-06 49.7 3.5 39 26-66 194-232 (444)
413 2p5t_B PEZT; postsegregational 89.7 0.12 4.2E-06 46.8 1.9 24 29-52 32-55 (253)
414 1t9h_A YLOQ, probable GTPase E 89.7 0.06 2E-06 50.4 -0.2 27 24-50 168-194 (307)
415 2xb4_A Adenylate kinase; ATP-b 89.7 0.19 6.6E-06 44.5 3.2 23 31-53 2-24 (223)
416 1oix_A RAS-related protein RAB 89.6 0.2 6.7E-06 43.1 3.2 22 31-52 31-52 (191)
417 1sxj_D Activator 1 41 kDa subu 89.6 0.21 7.3E-06 47.4 3.7 34 18-51 45-80 (353)
418 3ux8_A Excinuclease ABC, A sub 89.6 0.11 3.8E-06 54.4 1.8 24 24-47 343-366 (670)
419 3ux8_A Excinuclease ABC, A sub 89.6 0.11 3.8E-06 54.4 1.8 23 24-46 39-61 (670)
420 1vht_A Dephospho-COA kinase; s 89.4 0.2 6.7E-06 44.1 3.1 23 29-51 4-26 (218)
421 1u94_A RECA protein, recombina 89.4 0.17 5.8E-06 48.4 2.8 38 27-66 61-98 (356)
422 1ojl_A Transcriptional regulat 89.4 0.24 8.3E-06 46.2 3.8 26 27-52 23-48 (304)
423 2f9l_A RAB11B, member RAS onco 89.3 0.21 7.2E-06 43.1 3.1 22 31-52 7-28 (199)
424 1c9k_A COBU, adenosylcobinamid 89.3 0.17 5.8E-06 43.1 2.4 21 32-52 2-22 (180)
425 3euj_A Chromosome partition pr 89.3 0.16 5.6E-06 50.5 2.6 25 26-51 27-51 (483)
426 1tue_A Replication protein E1; 89.2 0.18 6.3E-06 43.8 2.6 20 30-49 59-78 (212)
427 2iw3_A Elongation factor 3A; a 89.2 0.15 5.2E-06 55.1 2.5 116 24-143 456-593 (986)
428 3a4m_A L-seryl-tRNA(SEC) kinas 89.1 0.21 7.1E-06 45.5 3.1 24 29-52 4-27 (260)
429 3t15_A Ribulose bisphosphate c 89.1 0.41 1.4E-05 44.4 5.1 24 30-53 37-60 (293)
430 3cmu_A Protein RECA, recombina 88.8 0.27 9.4E-06 57.0 4.3 93 25-129 1077-1170(2050)
431 3uk6_A RUVB-like 2; hexameric 88.8 0.24 8.1E-06 47.5 3.4 24 30-53 71-94 (368)
432 2oxc_A Probable ATP-dependent 88.8 2.8 9.6E-05 36.8 10.3 76 252-336 90-171 (230)
433 2www_A Methylmalonic aciduria 88.7 0.3 1E-05 46.6 3.9 24 29-52 74-97 (349)
434 3qkt_A DNA double-strand break 88.7 0.23 7.7E-06 47.3 3.1 21 29-49 23-43 (339)
435 3r20_A Cytidylate kinase; stru 88.5 0.31 1.1E-05 43.5 3.6 26 28-53 8-33 (233)
436 4tmk_A Protein (thymidylate ki 88.5 0.31 1E-05 42.9 3.6 24 28-51 2-25 (213)
437 3cf2_A TER ATPase, transitiona 88.4 1.2 4.1E-05 47.2 8.6 24 30-53 512-535 (806)
438 3auy_A DNA double-strand break 88.3 0.24 8.3E-06 47.7 3.0 21 30-50 26-46 (371)
439 2grj_A Dephospho-COA kinase; T 88.3 0.28 9.6E-06 42.3 3.1 23 30-52 13-35 (192)
440 4edh_A DTMP kinase, thymidylat 88.2 0.26 9E-06 43.3 3.0 25 27-51 4-28 (213)
441 1q3t_A Cytidylate kinase; nucl 88.1 0.32 1.1E-05 43.4 3.5 28 26-53 13-40 (236)
442 1wb9_A DNA mismatch repair pro 88.0 0.28 9.5E-06 52.2 3.5 25 27-51 605-629 (800)
443 3cr8_A Sulfate adenylyltranfer 88.0 0.19 6.5E-06 51.1 2.2 27 26-52 366-392 (552)
444 3ice_A Transcription terminati 87.9 0.25 8.5E-06 47.4 2.7 30 22-51 167-196 (422)
445 1vec_A ATP-dependent RNA helic 87.9 5 0.00017 34.3 11.2 76 253-336 70-151 (206)
446 3lv8_A DTMP kinase, thymidylat 87.8 0.34 1.2E-05 43.3 3.5 26 27-52 25-50 (236)
447 2gj8_A MNME, tRNA modification 87.8 0.29 9.9E-06 41.1 2.9 25 28-52 3-27 (172)
448 3pxg_A Negative regulator of g 87.7 0.54 1.8E-05 46.8 5.3 36 17-52 187-224 (468)
449 3tmk_A Thymidylate kinase; pho 87.7 0.36 1.2E-05 42.5 3.5 26 28-53 4-29 (216)
450 3v9p_A DTMP kinase, thymidylat 87.6 0.26 9E-06 43.8 2.6 26 26-51 22-47 (227)
451 1xp8_A RECA protein, recombina 87.6 0.26 8.9E-06 47.3 2.7 28 27-54 72-99 (366)
452 2wji_A Ferrous iron transport 87.6 0.33 1.1E-05 40.4 3.1 21 31-51 5-25 (165)
453 1ewq_A DNA mismatch repair pro 87.5 0.3 1E-05 51.7 3.4 23 29-51 576-598 (765)
454 1t6n_A Probable ATP-dependent 87.5 3.3 0.00011 36.0 9.9 76 254-336 82-163 (220)
455 1w1w_A Structural maintenance 87.5 0.33 1.1E-05 47.8 3.5 26 27-52 24-49 (430)
456 3m6a_A ATP-dependent protease 87.5 0.31 1.1E-05 49.5 3.4 26 28-53 107-132 (543)
457 3oiy_A Reverse gyrase helicase 87.5 0.63 2.2E-05 45.3 5.6 79 252-336 62-144 (414)
458 3thx_B DNA mismatch repair pro 87.4 0.24 8.2E-06 53.4 2.6 25 26-50 670-694 (918)
459 4b4t_M 26S protease regulatory 87.4 0.51 1.7E-05 46.2 4.7 26 28-53 214-239 (434)
460 2dyk_A GTP-binding protein; GT 87.3 0.36 1.2E-05 39.6 3.2 22 31-52 3-24 (161)
461 1q57_A DNA primase/helicase; d 87.3 0.38 1.3E-05 48.4 3.9 58 20-79 233-290 (503)
462 4aby_A DNA repair protein RECN 87.2 0.11 3.6E-06 51.0 -0.2 24 27-51 59-82 (415)
463 2vhj_A Ntpase P4, P4; non- hyd 87.2 0.31 1.1E-05 45.6 2.9 27 26-52 120-146 (331)
464 2o5v_A DNA replication and rep 87.1 0.24 8.2E-06 47.4 2.2 42 294-339 302-343 (359)
465 1e69_A Chromosome segregation 87.1 0.27 9.3E-06 46.3 2.5 23 28-51 24-46 (322)
466 2ce2_X GTPase HRAS; signaling 87.0 0.37 1.3E-05 39.5 3.1 22 31-52 5-26 (166)
467 1um8_A ATP-dependent CLP prote 86.9 0.33 1.1E-05 46.7 3.1 25 29-53 72-96 (376)
468 4b4t_L 26S protease subunit RP 86.9 0.56 1.9E-05 46.0 4.7 25 29-53 215-239 (437)
469 1z2a_A RAS-related protein RAB 86.9 0.38 1.3E-05 39.7 3.1 22 31-52 7-28 (168)
470 4b4t_K 26S protease regulatory 86.6 0.5 1.7E-05 46.3 4.2 26 28-53 205-230 (428)
471 3ake_A Cytidylate kinase; CMP 86.6 0.39 1.3E-05 41.6 3.1 23 31-53 4-26 (208)
472 2iw3_A Elongation factor 3A; a 86.6 0.18 6E-06 54.6 1.0 32 21-52 691-722 (986)
473 1uj2_A Uridine-cytidine kinase 86.5 0.38 1.3E-05 43.4 3.1 23 30-52 23-45 (252)
474 2ged_A SR-beta, signal recogni 86.5 0.41 1.4E-05 40.8 3.2 23 30-52 49-71 (193)
475 1ltq_A Polynucleotide kinase; 86.4 0.39 1.3E-05 44.6 3.2 22 30-51 3-24 (301)
476 2wjg_A FEOB, ferrous iron tran 86.3 0.42 1.4E-05 40.5 3.1 21 31-51 9-29 (188)
477 1z0j_A RAB-22, RAS-related pro 86.3 0.44 1.5E-05 39.4 3.2 23 31-53 8-30 (170)
478 1ky3_A GTP-binding protein YPT 86.2 0.44 1.5E-05 40.0 3.2 22 31-52 10-31 (182)
479 1kao_A RAP2A; GTP-binding prot 86.2 0.45 1.5E-05 39.1 3.2 22 31-52 5-26 (167)
480 2f6r_A COA synthase, bifunctio 86.2 0.41 1.4E-05 44.1 3.2 21 30-50 76-96 (281)
481 3tqf_A HPR(Ser) kinase; transf 86.1 0.42 1.5E-05 40.2 2.9 24 28-51 15-38 (181)
482 1g8p_A Magnesium-chelatase 38 86.1 0.46 1.6E-05 45.0 3.6 25 28-52 44-68 (350)
483 1g16_A RAS-related protein SEC 86.1 0.44 1.5E-05 39.4 3.1 22 31-52 5-26 (170)
484 2zej_A Dardarin, leucine-rich 86.0 0.37 1.3E-05 40.9 2.6 21 31-51 4-24 (184)
485 1ek0_A Protein (GTP-binding pr 86.0 0.45 1.5E-05 39.3 3.1 23 31-53 5-27 (170)
486 3thx_A DNA mismatch repair pro 86.0 0.37 1.3E-05 52.1 3.1 23 27-49 660-682 (934)
487 2c9o_A RUVB-like 1; hexameric 86.0 0.67 2.3E-05 45.9 4.9 31 22-52 52-86 (456)
488 2r62_A Cell division protease 85.9 0.19 6.5E-06 45.8 0.7 24 29-52 44-67 (268)
489 1u8z_A RAS-related protein RAL 85.9 0.47 1.6E-05 39.1 3.1 22 31-52 6-27 (168)
490 1a7j_A Phosphoribulokinase; tr 85.8 0.31 1.1E-05 45.2 2.1 23 29-51 5-27 (290)
491 2chq_A Replication factor C sm 85.8 0.49 1.7E-05 44.0 3.6 34 18-51 25-60 (319)
492 1qhl_A Protein (cell division 85.8 0.14 4.9E-06 45.5 -0.2 22 31-52 29-50 (227)
493 1qde_A EIF4A, translation init 85.7 4.1 0.00014 35.4 9.5 75 252-336 80-160 (224)
494 1wms_A RAB-9, RAB9, RAS-relate 85.7 0.48 1.6E-05 39.6 3.2 22 31-52 9-30 (177)
495 3g5u_A MCG1178, multidrug resi 85.7 0.25 8.6E-06 55.7 1.7 33 19-51 406-438 (1284)
496 2ga8_A Hypothetical 39.9 kDa p 85.7 0.54 1.9E-05 44.6 3.7 25 26-50 19-45 (359)
497 2erx_A GTP-binding protein DI- 85.6 0.49 1.7E-05 39.1 3.2 21 31-51 5-25 (172)
498 2iut_A DNA translocase FTSK; n 85.6 0.65 2.2E-05 47.0 4.5 42 28-69 213-256 (574)
499 1svi_A GTP-binding protein YSX 85.6 0.44 1.5E-05 40.7 2.9 23 29-51 23-45 (195)
500 3fe2_A Probable ATP-dependent 85.5 1.8 6.3E-05 38.4 7.1 75 253-336 101-181 (242)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=6.6e-69 Score=572.66 Aligned_cols=434 Identities=49% Similarity=0.799 Sum_probs=390.0
Q ss_pred chhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCC-CcEEEEecchHHHHHHHHHHHHH
Q 011751 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD-GKLIGVTQPRRVAAVTVAKRVAE 81 (478)
Q Consensus 3 ~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~-~~~i~~~~p~~~l~~~~~~~~~~ 81 (478)
+.+++..+..+|.+..|+.+...+..+++++++||||||||+++|+++.......+ +..+++++|+++++.++++++..
T Consensus 83 ~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~ 162 (773)
T 2xau_A 83 YVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAE 162 (773)
T ss_dssp HHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHH
Confidence 45667777889999999999999999999999999999999999999876554332 55799999999999999999999
Q ss_pred HhCCcCCCEEEEEEeecccC---------ChhhhHHHHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccc
Q 011751 82 ESGVELGQRVGYSIRFDDRT---------STSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSA 152 (478)
Q Consensus 82 ~~~~~~~~~vg~~~~~~~~~---------~~~~~~~~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~ 152 (478)
..+..++..+|+....+... +.......++.+..+.++++||+||+|+|..+.+.++.+++.+...+
T Consensus 163 ~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~---- 238 (773)
T 2xau_A 163 EMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR---- 238 (773)
T ss_dssp HTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC----
T ss_pred HhCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhC----
Confidence 99988999999876554322 22233345666788999999999999999999999999999887665
Q ss_pred cCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChhHHHhhhCCCCeEEeCCccccceEEecCC
Q 011751 153 DGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLY 232 (478)
Q Consensus 153 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (478)
++.++|+||||++.+.+++|+++.+++.++++.+|++.+|...
T Consensus 239 -------------------------------------~~~~iIl~SAT~~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~ 281 (773)
T 2xau_A 239 -------------------------------------PDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPE 281 (773)
T ss_dssp -------------------------------------TTCEEEEEESCSCCHHHHHHTTSCCEEECCCCCCCEEEECCSS
T ss_pred -------------------------------------CCceEEEEeccccHHHHHHHhcCCCcccccCcccceEEEEecC
Confidence 6789999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcC--CCCCCCeEEEEccCCCCHHHHHhhcCcCC
Q 011751 233 PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQL--PEASRKLVTVPIFSSLPSEQQMRVFAPAA 310 (478)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~--~~~~~~~~v~~~h~~l~~~~r~~i~~~f~ 310 (478)
+..++....+..+..++...+++++||||+++++++.+++.|.+..... .....++.+.++||+|++++|..+++.|+
T Consensus 282 ~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~ 361 (773)
T 2xau_A 282 FQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAP 361 (773)
T ss_dssp CCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCC
T ss_pred CchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcc
Confidence 9889988888888888877778999999999999999999998643221 11223788999999999999999999999
Q ss_pred -----CCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCCCCeEEEecC
Q 011751 311 -----AGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYP 385 (478)
Q Consensus 311 -----~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~ 385 (478)
+|.++|||||+++++|||+|+|++|||+|+.+.+.||+..++..+...|.|.++|.||+|||||.++|.||+||+
T Consensus 362 ~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~ 441 (773)
T 2xau_A 362 ESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYT 441 (773)
T ss_dssp CCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSC
T ss_pred cccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCCCEEEEEec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhH-hcccCCCCCcccccCchHHHHHHHHcCCCCCCCccCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHhccC
Q 011751 386 ENEF-DKLEDSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARL 464 (478)
Q Consensus 386 ~~~~-~~~~~~~~pei~~~~l~~~~l~~~~~~~~~~~~~~~~~~p~~~~l~~al~~L~~~g~l~~~~~~t~~lG~~~~~~ 464 (478)
++++ +.+.+...|||.+.+|.+++|+++.+|+.+...|+|++||+.+.+..|++.|..+|+||+++++|+ +|+.|+.+
T Consensus 442 ~~~~~~~l~~~~~pEi~r~~L~~~~L~l~~~gi~~~~~f~~~~~p~~~~i~~a~~~L~~lgald~~~~lT~-lG~~~a~~ 520 (773)
T 2xau_A 442 EEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDEGNLTP-LGRLASQF 520 (773)
T ss_dssp HHHHHHTSCSSCCCGGGGSCCHHHHHHHHHTTCCCGGGCCCSSCCCHHHHHHHHHHHHHTTSBCTTSCBCH-HHHHHTTS
T ss_pred HHHhcccccccCCCccccCcHHHHHHHHHHcCCCChhhccccCCCcHHHHHHHHHHHHHcCCcccCCCcCh-hhhhhccc
Confidence 9999 569999999999999999999999999999999999999999999999999999999999999996 99999999
Q ss_pred CCCHhhhchheecC
Q 011751 465 PLDPIYSKALIVAE 478 (478)
Q Consensus 465 ~~~p~~~~~l~~~~ 478 (478)
|++|++||||+.|+
T Consensus 521 pl~p~~~~~l~~~~ 534 (773)
T 2xau_A 521 PLDPMLAVMLIGSF 534 (773)
T ss_dssp SSCHHHHHHHHHGG
T ss_pred cCCHHHHHHHHhhc
Confidence 99999999999763
No 2
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=6.2e-51 Score=435.16 Aligned_cols=408 Identities=19% Similarity=0.205 Sum_probs=299.0
Q ss_pred HHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCc
Q 011751 7 LQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVE 86 (478)
Q Consensus 7 ~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~ 86 (478)
++..+.-.++++|.++++.+.++++++++||||||||+++++++++.... +.++++++|+++++.++.+++.. +. .
T Consensus 18 l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~--~~~~l~i~P~r~La~q~~~~~~~-~~-~ 93 (702)
T 2p6r_A 18 LKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--GGKSLYVVPLRALAGEKYESFKK-WE-K 93 (702)
T ss_dssp HHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHHTT-TT-T
T ss_pred HHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh--CCcEEEEeCcHHHHHHHHHHHHH-HH-h
Confidence 33333447899999999999999999999999999999999888865432 45799999999999999998842 22 2
Q ss_pred CCCEEEEEEeeccc-----------CChhhhHHHHhhC--cCcCCCcceEeecccc-----cchhhhHHHHHHHHHHHhh
Q 011751 87 LGQRVGYSIRFDDR-----------TSTSTRIKEALLD--PYLSRYSAIIVDEAHE-----RTVHTDVLLGLLKKVQNAR 148 (478)
Q Consensus 87 ~~~~vg~~~~~~~~-----------~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~-----r~~~~~~~l~~l~~~~~~~ 148 (478)
.+..++...+.... ..+..++..++.. .+++++++||+||+|+ |....+.++..++.. +
T Consensus 94 ~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~---~ 170 (702)
T 2p6r_A 94 IGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRM---N 170 (702)
T ss_dssp TTCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHH---C
T ss_pred cCCEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhc---C
Confidence 24444433221111 1223333333332 2378999999999997 555555555555421 2
Q ss_pred cccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC-ChhHHHhhhCCCCeEEeCCccccceE
Q 011751 149 SKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQFPVEI 227 (478)
Q Consensus 149 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (478)
++.|+|+||||+ |.+++++|++ .+.+..+.+.+|+..
T Consensus 171 -----------------------------------------~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~ 208 (702)
T 2p6r_A 171 -----------------------------------------KALRVIGLSATAPNVTEIAEWLD-ADYYVSDWRPVPLVE 208 (702)
T ss_dssp -----------------------------------------TTCEEEEEECCCTTHHHHHHHTT-CEEEECCCCSSCEEE
T ss_pred -----------------------------------------cCceEEEECCCcCCHHHHHHHhC-CCcccCCCCCccceE
Confidence 678999999999 6999999997 556777777777776
Q ss_pred EecCCCCcchHH---------HHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCC-------------
Q 011751 228 LYTLYPEPDYLD---------ATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEAS------------- 285 (478)
Q Consensus 228 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~------------- 285 (478)
.+...+...+.+ .....+.... .+++++||||+++++++.++..|.+.+.......
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~ 286 (702)
T 2p6r_A 209 GVLCEGTLELFDGAFSTSRRVKFEELVEECV--AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGE 286 (702)
T ss_dssp EEECSSEEEEEETTEEEEEECCHHHHHHHHH--HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSH
T ss_pred EEeeCCeeeccCcchhhhhhhhHHHHHHHHH--hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhcccc
Confidence 544322111100 0222333333 2478999999999999999999987643211000
Q ss_pred --------CCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCccccee
Q 011751 286 --------RKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLV 357 (478)
Q Consensus 286 --------~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~ 357 (478)
.+..+..+||+|+.++|..+++.|++|.++|||||+++++|||+|++++||++ ...|| +. .
T Consensus 287 ~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~yd---~~----~ 355 (702)
T 2p6r_A 287 MSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRS----LYRFD---GY----S 355 (702)
T ss_dssp HHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECC----SEEES---SS----E
T ss_pred ccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcC----ceeeC---CC----C
Confidence 01247779999999999999999999999999999999999999999999984 66787 11 3
Q ss_pred eecCHHHHHHhhcccCCCC---CCeEEEecCHhhHhccc---CCCCCcccccCchH------HHHHHHHcCCC-CCCC--
Q 011751 358 VPISKAQALQRSGRAGREG---PGKCFRLYPENEFDKLE---DSTKPEIKRCNLSN------VILQLKALGVD-DIIG-- 422 (478)
Q Consensus 358 ~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~~~~~---~~~~pei~~~~l~~------~~l~~~~~~~~-~~~~-- 422 (478)
.|.|.++|.||+|||||.| +|.||.++++.+++.+. ....|++.++++.. .++.+...|.. +...
T Consensus 356 ~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~ 435 (702)
T 2p6r_A 356 KRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELE 435 (702)
T ss_dssp EECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHH
T ss_pred CcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHH
Confidence 6999999999999999998 89999999988765422 24567777776654 56666666632 2111
Q ss_pred ----ccCC----CCCCHHHHHHHHHHHHHCCCCCCC--CCCCHHHHHHhccCCCCHhhhchheec
Q 011751 423 ----FDFM----EKPSRASIIKSLEQLFLLGALTDD--CKLSDPVGHQMARLPLDPIYSKALIVA 477 (478)
Q Consensus 423 ----~~~~----~~p~~~~l~~al~~L~~~g~l~~~--~~~t~~lG~~~~~~~~~p~~~~~l~~~ 477 (478)
..|+ .+|..+.++.+++.|...|+|+.+ +.+|+ +|++++.+|++|.+|++++.+
T Consensus 436 ~~l~~t~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~t~-lG~~~~~~~~~~~~~~~~~~~ 499 (702)
T 2p6r_A 436 DFFADTFFFKQNEISLSYELERVVRQLENWGMVVEAAHLAPTK-LGSLVSRLYIDPLTGFIFHDV 499 (702)
T ss_dssp HHHHTSTTHHHHCCCCHHHHHHHHHHHHHTTSEEESSSEEECH-HHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHhhhHHHhhhHHHHHHHHHHHHHHHHCcCeeECCeeccCh-HHHHHHHHhCCHHHHHHHHHH
Confidence 1232 368889999999999999999877 78997 999999999999999999764
No 3
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=4e-51 Score=438.02 Aligned_cols=416 Identities=17% Similarity=0.181 Sum_probs=284.5
Q ss_pred hHHHhhhcCCcHHHHHHHHHH-HhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHh
Q 011751 5 KILQQRKSLPIASVEKRLVEE-VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (478)
Q Consensus 5 ~~~~~~~~~~~~~~q~~~~~~-l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (478)
+.++..+.-.++++|.++++. +.++++++++||||||||+++++++++.... .+.++++++|+++++.++.+++.. +
T Consensus 21 ~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-~~~~il~i~P~r~La~q~~~~~~~-~ 98 (715)
T 2va8_A 21 EIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK-NGGKAIYVTPLRALTNEKYLTFKD-W 98 (715)
T ss_dssp HHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH-SCSEEEEECSCHHHHHHHHHHHGG-G
T ss_pred HHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH-CCCeEEEEeCcHHHHHHHHHHHHH-h
Confidence 334444444789999999999 8899999999999999999999998865432 256899999999999999998832 2
Q ss_pred CCcCCCEEEEEEeeccc-----------CChhhhHHHHh-hCc-CcCCCcceEeecccccchhhhHHHHHHHHHHHhhcc
Q 011751 84 GVELGQRVGYSIRFDDR-----------TSTSTRIKEAL-LDP-YLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSK 150 (478)
Q Consensus 84 ~~~~~~~vg~~~~~~~~-----------~~~~~~~~~~l-~~~-~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~ 150 (478)
. ..+..++...+.... ..+..++..++ .++ +++++++||+||+|+.... .....+..+..+.
T Consensus 99 ~-~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~--~~~~~l~~i~~~~-- 173 (715)
T 2va8_A 99 E-LIGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDP--ERGPVVESVTIRA-- 173 (715)
T ss_dssp G-GGTCCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCT--TTHHHHHHHHHHH--
T ss_pred h-cCCCEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCc--ccchHHHHHHHhc--
Confidence 1 123444432221111 12223333322 233 3889999999999964311 1111222222211
Q ss_pred cccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC-ChhHHHhhhCCCCeEEeCCccccceEEe
Q 011751 151 SADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQFPVEILY 229 (478)
Q Consensus 151 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (478)
.+.|+|+||||+ |.+.+++|++ .+.+..+.+.+|+...+
T Consensus 174 ---------------------------------------~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~ 213 (715)
T 2va8_A 174 ---------------------------------------KRRNLLALSATISNYKQIAKWLG-AEPVATNWRPVPLIEGV 213 (715)
T ss_dssp ---------------------------------------HTSEEEEEESCCTTHHHHHHHHT-CEEEECCCCSSCEEEEE
T ss_pred ---------------------------------------ccCcEEEEcCCCCCHHHHHHHhC-CCccCCCCCCCCceEEE
Confidence 357999999999 7999999997 44566666666665433
Q ss_pred cCCC-----------C---cch--HHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhc--CCC--------
Q 011751 230 TLYP-----------E---PDY--LDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQ--LPE-------- 283 (478)
Q Consensus 230 ~~~~-----------~---~~~--~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~--~~~-------- 283 (478)
...+ . ... .......+.... .+++++||||+++++++.++..|.+.... +..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~ 291 (715)
T 2va8_A 214 IYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSL--SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILK 291 (715)
T ss_dssp EEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHH
T ss_pred EecCCcccceeeecCcchhhhcccchHHHHHHHHHH--hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHH
Confidence 2111 0 000 122333444433 35799999999999999999999875321 000
Q ss_pred ------C-----------CCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceee
Q 011751 284 ------A-----------SRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLY 346 (478)
Q Consensus 284 ------~-----------~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~y 346 (478)
. .....+..+||+|+.++|..+++.|++|.++|||||+++++|||+|++++||++ ...|
T Consensus 292 ~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~~ 367 (715)
T 2va8_A 292 QLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGD----IYRF 367 (715)
T ss_dssp HHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECC----C---
T ss_pred HHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeC----Ceec
Confidence 0 001248889999999999999999999999999999999999999999999984 5668
Q ss_pred cCCCCcccceeeecCHHHHHHhhcccCCCC---CCeEEEecCHhh-Hhcc---cCCCCCcccccCchH------HHHHHH
Q 011751 347 DPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPENE-FDKL---EDSTKPEIKRCNLSN------VILQLK 413 (478)
Q Consensus 347 d~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~-~~~~---~~~~~pei~~~~l~~------~~l~~~ 413 (478)
|+..+.. ..|.|.++|.||+|||||.| +|.||+++++.+ +..+ .....|++.++++.. .++.++
T Consensus 368 d~~~~~~---~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~ 444 (715)
T 2va8_A 368 NKKIAGY---YDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGIL 444 (715)
T ss_dssp --------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHH
T ss_pred cccCCCC---CCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHHHH
Confidence 8554332 36899999999999999999 899999997655 3221 113567777776554 667777
Q ss_pred HcCCC----CCCC---ccCCC-CCCHHHHHHHHHHHHHCCCCCCCC---CCCHHHHHHhccCCCCHhhhchheec
Q 011751 414 ALGVD----DIIG---FDFME-KPSRASIIKSLEQLFLLGALTDDC---KLSDPVGHQMARLPLDPIYSKALIVA 477 (478)
Q Consensus 414 ~~~~~----~~~~---~~~~~-~p~~~~l~~al~~L~~~g~l~~~~---~~t~~lG~~~~~~~~~p~~~~~l~~~ 477 (478)
..|.. +... ..|+. +|+...++.+++.|..+|+|+.++ .+|+ +|+.|+.+|++|.+|++++.+
T Consensus 445 ~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~~t~-lG~~~~~~~~~~~~~~~~~~~ 518 (715)
T 2va8_A 445 SAEGNLSEKQLENFAYESLLAKQLVDVYFDRAIRWLLEHSFIKEEGNTFALTN-FGKRVADLYINPFTADIIRKG 518 (715)
T ss_dssp HHHCSEEHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTSEEECSSEEEECH-HHHHHHHHTCCHHHHHHHHHH
T ss_pred hccccCCHHHHHHHHHhhHHHhhcchHHHHHHHHHHHHCcCEeecCCeEeeCh-HHHHHHHHcCCHhHHHHHHHH
Confidence 66632 1111 13443 455667999999999999998764 7996 999999999999999999764
No 4
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.2e-48 Score=418.77 Aligned_cols=415 Identities=16% Similarity=0.147 Sum_probs=284.8
Q ss_pred hhHHHhhhcCCcHHHHHHHHHH-HhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHH
Q 011751 4 QKILQQRKSLPIASVEKRLVEE-VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~-l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~ 82 (478)
.+.++..+.-.++++|.+++.. +.++++++++||||||||+++++++++.... .+.++++++|+++++.++.+++.+.
T Consensus 13 ~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-~~~~~l~i~P~raLa~q~~~~~~~l 91 (720)
T 2zj8_A 13 KSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT-QGGKAVYIVPLKALAEEKFQEFQDW 91 (720)
T ss_dssp HHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH-HCSEEEEECSSGGGHHHHHHHTGGG
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh-CCCEEEEEcCcHHHHHHHHHHHHHH
Confidence 3455555555889999999998 8999999999999999999988888765432 2568999999999999999998532
Q ss_pred hCCcCCCEEEEEEeecc-----------cCChhhhHHHHhh-C-cCcCCCcceEeecccccchhhhHHHHHHHHHHHhhc
Q 011751 83 SGVELGQRVGYSIRFDD-----------RTSTSTRIKEALL-D-PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARS 149 (478)
Q Consensus 83 ~~~~~~~~vg~~~~~~~-----------~~~~~~~~~~~l~-~-~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~ 149 (478)
. ..+..++...+... ...+..++..++. + .+++++++||+||+|.
T Consensus 92 ~--~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~-------------------- 149 (720)
T 2zj8_A 92 E--KIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHL-------------------- 149 (720)
T ss_dssp G--GGTCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGG--------------------
T ss_pred H--hcCCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcc--------------------
Confidence 1 12444544322111 0122233333222 2 3478999999999993
Q ss_pred ccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC-ChhHHHhhhCCCCeEEeCCccccceEE
Q 011751 150 KSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQFPVEIL 228 (478)
Q Consensus 150 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (478)
+.+..++..+..++.++. .+.|+|+||||+ |.+++++|++. +.+..+.+..|+...
T Consensus 150 ------------------l~~~~r~~~~~~ll~~l~----~~~~ii~lSATl~n~~~~~~~l~~-~~~~~~~rp~~l~~~ 206 (720)
T 2zj8_A 150 ------------------IGSRDRGATLEVILAHML----GKAQIIGLSATIGNPEELAEWLNA-ELIVSDWRPVKLRRG 206 (720)
T ss_dssp ------------------GGCTTTHHHHHHHHHHHB----TTBEEEEEECCCSCHHHHHHHTTE-EEEECCCCSSEEEEE
T ss_pred ------------------cCCCcccHHHHHHHHHhh----cCCeEEEEcCCcCCHHHHHHHhCC-cccCCCCCCCcceEE
Confidence 222222222222222222 257999999999 89999999974 345555555555543
Q ss_pred ecCCCCcch-------HHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCC------------C-----
Q 011751 229 YTLYPEPDY-------LDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPE------------A----- 284 (478)
Q Consensus 229 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~------------~----- 284 (478)
+...+...+ .......+.+.. .+++++||||+++++++.++..|.+....... .
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~ 284 (720)
T 2zj8_A 207 VFYQGFVTWEDGSIDRFSSWEELVYDAI--RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENP 284 (720)
T ss_dssp EEETTEEEETTSCEEECSSTTHHHHHHH--HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCH
T ss_pred EEeCCeeeccccchhhhhHHHHHHHHHH--hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhccc
Confidence 321110000 111122223322 24789999999999999999999876432100 0
Q ss_pred -------CCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCccccee
Q 011751 285 -------SRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLV 357 (478)
Q Consensus 285 -------~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~ 357 (478)
.....+..+||+|+.++|..+++.|++|.++|||||+++++|||+|++++||+. ...|| ..| .
T Consensus 285 ~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~----~~~yd-~~g-----~ 354 (720)
T 2zj8_A 285 TNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRD----IWRYS-DFG-----M 354 (720)
T ss_dssp HHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECC----SEECC-SSS-----C
T ss_pred chHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcC----Ceeec-CCC-----C
Confidence 001248899999999999999999999999999999999999999999999983 35566 222 1
Q ss_pred eecCHHHHHHhhcccCCCC---CCeEEEecCHhhHh----cccCCCCCccccc-----CchHHHHHHHHcCCCCC----C
Q 011751 358 VPISKAQALQRSGRAGREG---PGKCFRLYPENEFD----KLEDSTKPEIKRC-----NLSNVILQLKALGVDDI----I 421 (478)
Q Consensus 358 ~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~~----~~~~~~~pei~~~-----~l~~~~l~~~~~~~~~~----~ 421 (478)
.|.|..+|.||+|||||.| +|.||.++++..++ .+.....+++... .+...++.....|.... .
T Consensus 355 ~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~ 434 (720)
T 2zj8_A 355 ERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEIL 434 (720)
T ss_dssp EECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHH
T ss_pred ccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHH
Confidence 5899999999999999998 79999999876533 3333333333322 24555666666553211 1
Q ss_pred C---ccCC------CCCCHHHHHHHHHHHHHCCCCC-CCC---CCCHHHHHHhccCCCCHhhhchheec
Q 011751 422 G---FDFM------EKPSRASIIKSLEQLFLLGALT-DDC---KLSDPVGHQMARLPLDPIYSKALIVA 477 (478)
Q Consensus 422 ~---~~~~------~~p~~~~l~~al~~L~~~g~l~-~~~---~~t~~lG~~~~~~~~~p~~~~~l~~~ 477 (478)
. +.|+ +++..+.++.+++.|...|+|+ .++ .+|+ +|+.|+.+|++|..+++++.+
T Consensus 435 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~t~-lG~~~~~~~~~~~~~~~~~~~ 502 (720)
T 2zj8_A 435 KFISNTFYAYQRKDTYSLEEKIRNILYFLLENEFIEISLEDKIRPLS-LGIRTAKLYIDPYTAKMFKDK 502 (720)
T ss_dssp HHHHTSHHHHHCSCCHHHHHHHHHHHHHHHHTTSEEECTTSCEEECH-HHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHhChHHHhccchHHHHHHHHHHHHHHHHCCCeeECCCCcEeeCh-HHHHHHHHcCCHHHHHHHHHH
Confidence 1 1222 2334578999999999999998 655 7896 999999999999999998764
No 5
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.7e-42 Score=393.64 Aligned_cols=413 Identities=14% Similarity=0.135 Sum_probs=287.0
Q ss_pred cHHHHHHHHHHHh-cCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEE
Q 011751 15 IASVEKRLVEEVR-KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGY 93 (478)
Q Consensus 15 ~~~~q~~~~~~l~-~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~ 93 (478)
..++|.++++.+. .+++++++||||||||+++.+++++.....++.+++++.|+++++.|..+.+.+.++...+..|+.
T Consensus 927 fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ 1006 (1724)
T 4f92_B 927 FNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVL 1006 (1724)
T ss_dssp CCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEE
T ss_pred CCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEE
Confidence 5789999999985 567899999999999999888888776655566899999999999999999988888777777764
Q ss_pred EEeec-----------ccCChhhhHHHHhh----CcCcCCCcceEeecccc----cchhhhHHHHHHHHHHHhhcccccC
Q 011751 94 SIRFD-----------DRTSTSTRIKEALL----DPYLSRYSAIIVDEAHE----RTVHTDVLLGLLKKVQNARSKSADG 154 (478)
Q Consensus 94 ~~~~~-----------~~~~~~~~~~~~l~----~~~l~~~~~lIiDE~H~----r~~~~~~~l~~l~~~~~~~~~~~~~ 154 (478)
..+.. ..+.+.+++..++. ...++++++||+||+|. |....+.++..++.+....
T Consensus 1007 ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~------ 1080 (1724)
T 4f92_B 1007 LTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQI------ 1080 (1724)
T ss_dssp CCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTT------
T ss_pred EECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHHHHHhhc------
Confidence 32211 11223333333332 24578999999999994 2223333333343332221
Q ss_pred CCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC-ChhHHHhhhCCCC--eEEeCCcc--ccceEEe
Q 011751 155 HSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAK--AVHVQGRQ--FPVEILY 229 (478)
Q Consensus 155 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~-~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~ 229 (478)
..++|+|+||||+ |++++++|++..+ .+.+.... .|++.+.
T Consensus 1081 ----------------------------------~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i 1126 (1724)
T 4f92_B 1081 ----------------------------------ERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHI 1126 (1724)
T ss_dssp ----------------------------------SSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEE
T ss_pred ----------------------------------CCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEE
Confidence 1678999999999 9999999998643 44444444 4444444
Q ss_pred cCCCCcchHHHH---HHHHH-HhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCC---------------------
Q 011751 230 TLYPEPDYLDAT---LITIF-QVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEA--------------------- 284 (478)
Q Consensus 230 ~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~--------------------- 284 (478)
...+........ ...+. .+....+++++||||+|++.|+.++..|...+......
T Consensus 1127 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~ 1206 (1724)
T 4f92_B 1127 QGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDS 1206 (1724)
T ss_dssp EEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCH
T ss_pred EeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccH
Confidence 333333322221 11111 22334568899999999999999998887654321100
Q ss_pred ----CCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeec
Q 011751 285 ----SRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPI 360 (478)
Q Consensus 285 ----~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~ 360 (478)
.....+..+||||++++|..+++.|++|.++|||||+++++|||+|++++||. ....||.... ...|.
T Consensus 1207 ~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~----~~~~~dg~~~----~~~~~ 1278 (1724)
T 4f92_B 1207 TLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIM----DTQYYNGKIH----AYVDY 1278 (1724)
T ss_dssp HHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEE----CSEEEETTTT----EEEEC
T ss_pred HHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEe----cCccccCccc----ccCCC
Confidence 01235888999999999999999999999999999999999999999999996 4566775543 23589
Q ss_pred CHHHHHHhhcccCCCC---CCeEEEecCHhh---HhcccCCCCC--cccccCchHHHHHHHHcCCCCCCC-------ccC
Q 011751 361 SKAQALQRSGRAGREG---PGKCFRLYPENE---FDKLEDSTKP--EIKRCNLSNVILQLKALGVDDIIG-------FDF 425 (478)
Q Consensus 361 s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~---~~~~~~~~~p--ei~~~~l~~~~l~~~~~~~~~~~~-------~~~ 425 (478)
+..+|+||+|||||.| .|.|+.++.+.+ |+.+.....| .-....+...++.....|.-.... ..|
T Consensus 1279 s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tf 1358 (1724)
T 4f92_B 1279 PIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTF 1358 (1724)
T ss_dssp CHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTTSCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSS
T ss_pred CHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHhCCCCceeeecccchHHHHHHHHHhcccCCHHHHHHHHHhhH
Confidence 9999999999999999 699999986543 3444333222 122334555565555544321110 011
Q ss_pred C---------------------CCCCHHHHHHHHHHHHHCCCCC--CCC--CCCHHHHHHhccCCCCHhhhchhee
Q 011751 426 M---------------------EKPSRASIIKSLEQLFLLGALT--DDC--KLSDPVGHQMARLPLDPIYSKALIV 476 (478)
Q Consensus 426 ~---------------------~~p~~~~l~~al~~L~~~g~l~--~~~--~~t~~lG~~~~~~~~~p~~~~~l~~ 476 (478)
+ +....+.++.+++.|++.|+|+ +++ .+|+ +|++++.++++|..++++..
T Consensus 1359 l~~r~~~nP~~y~l~~~~~~~~~~~l~~lv~~~l~~L~~~~~I~~~~~~~l~~T~-lG~i~s~~yi~~~t~~~~~~ 1433 (1724)
T 4f92_B 1359 LYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLN-LGMIAAYYYINYTTIELFSM 1433 (1724)
T ss_dssp HHHHHHHSGGGTTCSCCSHHHHHHHHHHHHHHHHHHHHHTTSEEEETTTEEEECH-HHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHhcCcccccccccchhhHHHHHHHHHHHHHHHHHHCCCEEEcCCCCEeecH-HHHHHHHHCCCHHHHHHHHH
Confidence 1 1122345678999999999995 333 4686 99999999999999998864
No 6
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.2e-41 Score=386.80 Aligned_cols=412 Identities=16% Similarity=0.177 Sum_probs=278.9
Q ss_pred cHHHHHHHHHHHh-cCCEEEEEcCCCCcHHhHHHHHHhhcCcc---------CCCcEEEEecchHHHHHHHHHHHHHHhC
Q 011751 15 IASVEKRLVEEVR-KNDILIIVGETGSGKTTQLPQFLFHAGFC---------RDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (478)
Q Consensus 15 ~~~~q~~~~~~l~-~~~~~~i~apTGsGKT~~~~~~~~~~~~~---------~~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (478)
+.++|.++++.+. .++|++++||||||||.++.+++++.... .++.+++++.|+++|+.+..+.+.+.++
T Consensus 80 ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~ 159 (1724)
T 4f92_B 80 LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLA 159 (1724)
T ss_dssp CCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHh
Confidence 5689999999754 68999999999999998887777654321 2356899999999999999999987765
Q ss_pred CcCCCEEEEEEeecc-----------cCChhhhHHHHhhC----cCcCCCcceEeecccc----cchhhhHHHHHHHHHH
Q 011751 85 VELGQRVGYSIRFDD-----------RTSTSTRIKEALLD----PYLSRYSAIIVDEAHE----RTVHTDVLLGLLKKVQ 145 (478)
Q Consensus 85 ~~~~~~vg~~~~~~~-----------~~~~~~~~~~~l~~----~~l~~~~~lIiDE~H~----r~~~~~~~l~~l~~~~ 145 (478)
. .|..|+...+... .+.+.+++..++.. ..++++++|||||+|. |....+.++..+++..
T Consensus 160 ~-~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~ 238 (1724)
T 4f92_B 160 T-YGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNI 238 (1724)
T ss_dssp T-TTCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHHHHH
T ss_pred h-CCCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccHHHHHHHHHHHHHHH
Confidence 3 4555553322111 12233444444432 2478899999999993 3333333333322222
Q ss_pred HhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC-ChhHHHhhhCCCC---eEEeCCc
Q 011751 146 NARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAK---AVHVQGR 221 (478)
Q Consensus 146 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~-~~~~~~~~~~~~~---~~~~~~~ 221 (478)
... ..++|+|+||||+ |.+++++|++..+ ...+...
T Consensus 239 ~~~----------------------------------------~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~ 278 (1724)
T 4f92_B 239 EMT----------------------------------------QEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNS 278 (1724)
T ss_dssp HHH----------------------------------------TCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGG
T ss_pred HhC----------------------------------------CCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCC
Confidence 111 1678999999999 9999999998653 3455555
Q ss_pred cccceE--EecCCCCcchHH--HHH-HHHHH-hhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCC------------
Q 011751 222 QFPVEI--LYTLYPEPDYLD--ATL-ITIFQ-VHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPE------------ 283 (478)
Q Consensus 222 ~~~~~~--~~~~~~~~~~~~--~~~-~~~~~-~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~------------ 283 (478)
..|+.+ ++.......... ... ..+.. +.....++++||||+|++.|+.+++.|.+.......
T Consensus 279 ~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~ 358 (1724)
T 4f92_B 279 FRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSAST 358 (1724)
T ss_dssp GCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCS
T ss_pred CccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHH
Confidence 555543 333333322211 111 12222 223345778999999999999999999876432110
Q ss_pred ----------------CCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeec
Q 011751 284 ----------------ASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYD 347 (478)
Q Consensus 284 ----------------~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd 347 (478)
+.....++.|||||++++|..+++.|++|.++|||||+++++|||+|++++||. ....||
T Consensus 359 ~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~----~~~~~~ 434 (1724)
T 4f92_B 359 EVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIK----GTQVYS 434 (1724)
T ss_dssp SHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEE----CCEEEE
T ss_pred HHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEe----CCEEec
Confidence 011235888999999999999999999999999999999999999999999997 567798
Q ss_pred CCCCcccceeeecCHHHHHHhhcccCCCC---CCeEEEecCHhh---HhcccCCCCC--cccccCchHHHHHHHHcCC-C
Q 011751 348 PVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPENE---FDKLEDSTKP--EIKRCNLSNVILQLKALGV-D 418 (478)
Q Consensus 348 ~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~---~~~~~~~~~p--ei~~~~l~~~~l~~~~~~~-~ 418 (478)
+..+.. .|.|..+|+||+|||||.| .|.++.+.+.++ |..+.....| .-....+.+.+++-..+|. .
T Consensus 435 ~~~~~~----~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~~~pieS~l~~~l~d~L~aeI~~g~i~ 510 (1724)
T 4f92_B 435 PEKGRW----TELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQ 510 (1724)
T ss_dssp TTTTEE----EECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTTCSCCCCCTTTTHHHHHHHHHHHTSCC
T ss_pred CcCCCc----ccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHHHcCCCcchhhccccHHHHHHHHHHHhhcC
Confidence 876643 5899999999999999998 799999986543 3333333222 1112234444444333332 1
Q ss_pred CCC--------------------Cc----------cCCCCCCHHHHHHHHHHHHHCCCCCCC---C--CCCHHHHHHhcc
Q 011751 419 DII--------------------GF----------DFMEKPSRASIIKSLEQLFLLGALTDD---C--KLSDPVGHQMAR 463 (478)
Q Consensus 419 ~~~--------------------~~----------~~~~~p~~~~l~~al~~L~~~g~l~~~---~--~~t~~lG~~~~~ 463 (478)
+.. .+ +.++....+.+..++..|.+.|+|..+ + ..|+ +|+++++
T Consensus 511 ~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~~~~~~i~~~~~~L~~~~li~~d~~~~~~~~T~-lGr~~s~ 589 (1724)
T 4f92_B 511 NAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTE-LGRIASH 589 (1724)
T ss_dssp BHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHHHHHHHHHHHHHHHHHTTSEEECTTTCBEEECH-HHHHHHH
T ss_pred CHHHHHHHHhccHHHHHhhhChhhhccCccccccchHHHHHHHHHHHHHHHHHHHCCCeeeecCCCccccch-HHHHHHH
Confidence 110 00 111112234577899999999999432 2 5797 9999999
Q ss_pred CCCCHhhhchhee
Q 011751 464 LPLDPIYSKALIV 476 (478)
Q Consensus 464 ~~~~p~~~~~l~~ 476 (478)
++++|..++.+..
T Consensus 590 ~yi~~~t~~~~~~ 602 (1724)
T 4f92_B 590 YYITNDTVQTYNQ 602 (1724)
T ss_dssp TTCCHHHHHHHHH
T ss_pred hcCCHHHHHHHHh
Confidence 9999999987754
No 7
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=4.1e-40 Score=332.01 Aligned_cols=310 Identities=17% Similarity=0.204 Sum_probs=220.3
Q ss_pred hHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCc------cCCCcEEEEecchHHHHHHHHHH
Q 011751 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF------CRDGKLIGVTQPRRVAAVTVAKR 78 (478)
Q Consensus 5 ~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~------~~~~~~i~~~~p~~~l~~~~~~~ 78 (478)
+.+...+.-.++++|+++++.+.+|++++++||||||||..+...++.... ...+..++++.|+++++.|+.+.
T Consensus 69 ~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~ 148 (434)
T 2db3_A 69 DNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNE 148 (434)
T ss_dssp HHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHH
Confidence 334445556689999999999999999999999999999665554443322 12355799999999999999998
Q ss_pred HHHHhCCcCCCEEEEEEee--------------cccCChhhhHHHHhhC--cCcCCCcceEeecccccchhhhHHHHHHH
Q 011751 79 VAEESGVELGQRVGYSIRF--------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLK 142 (478)
Q Consensus 79 ~~~~~~~~~~~~vg~~~~~--------------~~~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~r~~~~~~~l~~l~ 142 (478)
+.+.... .+..++...+. +..+.+..++..++.. ..+.+++++|+||||
T Consensus 149 ~~~~~~~-~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah-------------- 213 (434)
T 2db3_A 149 ARKFAFE-SYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEAD-------------- 213 (434)
T ss_dssp HHHHTTT-SSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHH--------------
T ss_pred HHHHhcc-CCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHh--------------
Confidence 8766532 22222221111 1112334444444443 347899999999998
Q ss_pred HHHHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCCh--hHHH-hhhCCCCeEEeC
Q 011751 143 KVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RGFS-EYFGCAKAVHVQ 219 (478)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~--~~~~-~~~~~~~~~~~~ 219 (478)
.|++.++...+..++..+.. .++.|++++|||++. +.++ .|+.+...+.+.
T Consensus 214 ------------------------~~~~~gf~~~~~~i~~~~~~--~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~ 267 (434)
T 2db3_A 214 ------------------------RMLDMGFSEDMRRIMTHVTM--RPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIG 267 (434)
T ss_dssp ------------------------HHTSTTTHHHHHHHHHCTTS--CSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEES
T ss_pred ------------------------hhhccCcHHHHHHHHHhcCC--CCCceEEEEeccCCHHHHHHHHHhccCCEEEEec
Confidence 44444444444444433211 266899999999943 3343 555544444433
Q ss_pred Cc---cccceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCC
Q 011751 220 GR---QFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSS 296 (478)
Q Consensus 220 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~ 296 (478)
.. ...+...+......+.... +..+.... .+++||||++++.++.+++.|.+. ++.+..+||+
T Consensus 268 ~~~~~~~~i~~~~~~~~~~~k~~~----l~~~l~~~-~~~~lVF~~t~~~a~~l~~~L~~~---------~~~~~~lhg~ 333 (434)
T 2db3_A 268 IVGGACSDVKQTIYEVNKYAKRSK----LIEILSEQ-ADGTIVFVETKRGADFLASFLSEK---------EFPTTSIHGD 333 (434)
T ss_dssp STTCCCTTEEEEEEECCGGGHHHH----HHHHHHHC-CTTEEEECSSHHHHHHHHHHHHHT---------TCCEEEESTT
T ss_pred cccccccccceEEEEeCcHHHHHH----HHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHhC---------CCCEEEEeCC
Confidence 21 2233444433333333322 22333222 345999999999999999999886 7889999999
Q ss_pred CCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC
Q 011751 297 LPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG 376 (478)
Q Consensus 297 l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~ 376 (478)
+++.+|..+++.|++|+.+|||||+++++|+|+|++++||+ || .|.+.++|+||+|||||.|
T Consensus 334 ~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~--------~d----------~p~~~~~y~qriGR~gR~g 395 (434)
T 2db3_A 334 RLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVIN--------YD----------MPSKIDDYVHRIGRTGRVG 395 (434)
T ss_dssp SCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEE--------SS----------CCSSHHHHHHHHTTSSCTT
T ss_pred CCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEE--------EC----------CCCCHHHHHHHhcccccCC
Confidence 99999999999999999999999999999999999999999 77 5889999999999999999
Q ss_pred -CCeEEEecCHh
Q 011751 377 -PGKCFRLYPEN 387 (478)
Q Consensus 377 -~G~~~~l~~~~ 387 (478)
.|.++.+++++
T Consensus 396 ~~G~a~~~~~~~ 407 (434)
T 2db3_A 396 NNGRATSFFDPE 407 (434)
T ss_dssp CCEEEEEEECTT
T ss_pred CCCEEEEEEecc
Confidence 99999999854
No 8
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1e-40 Score=334.98 Aligned_cols=315 Identities=16% Similarity=0.255 Sum_probs=210.6
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccC-CCcEEEEecchHHHHHHHHHHHHHH
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPRRVAAVTVAKRVAEE 82 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~-~~~~i~~~~p~~~l~~~~~~~~~~~ 82 (478)
++.+...+...++++|+++++.+.+|+++++++|||||||+++..+++...... .+.+++++.|+++++.|+.+.+.+.
T Consensus 52 ~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 131 (414)
T 3eiq_A 52 LRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMAL 131 (414)
T ss_dssp HHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHH
Confidence 344555667789999999999999999999999999999988777777654432 3567999999999999999988775
Q ss_pred hCCcCCCEEEEEEeecc---------------cCChhhhHHHHhhC--cCcCCCcceEeecccccchhhhHHHHHHHHHH
Q 011751 83 SGVELGQRVGYSIRFDD---------------RTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQ 145 (478)
Q Consensus 83 ~~~~~~~~vg~~~~~~~---------------~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~ 145 (478)
.. ..+..++....... ...+..++...+.. ..+.++++||+||||+.
T Consensus 132 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~--------------- 195 (414)
T 3eiq_A 132 GD-YMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEM--------------- 195 (414)
T ss_dssp GG-GSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHH---------------
T ss_pred hc-ccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHh---------------
Confidence 43 22333332221111 11222333333322 24677999999999942
Q ss_pred HhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChh--HH-HhhhCCCCeEEeCCcc
Q 011751 146 NARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--GF-SEYFGCAKAVHVQGRQ 222 (478)
Q Consensus 146 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~--~~-~~~~~~~~~~~~~~~~ 222 (478)
.+.++...+..++..+. ++.++++||||++.+ .+ ..++.+...+......
T Consensus 196 -----------------------~~~~~~~~~~~~~~~~~----~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (414)
T 3eiq_A 196 -----------------------LSRGFKDQIYDIFQKLN----SNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE 248 (414)
T ss_dssp -----------------------HHTTTHHHHHHHHTTSC----TTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCC
T ss_pred -----------------------hccCcHHHHHHHHHhCC----CCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCc
Confidence 11111111111222222 678999999999543 33 3455444333333222
Q ss_pred c---cceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCH
Q 011751 223 F---PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPS 299 (478)
Q Consensus 223 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~ 299 (478)
. .+...+......+. ....+..+......+++||||+++++++.+++.|.+. ++.+..+||+++.
T Consensus 249 ~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~---------~~~~~~~h~~~~~ 316 (414)
T 3eiq_A 249 LTLEGIRQFYINVEREEW---KLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHAR---------DFTVSAMHGDMDQ 316 (414)
T ss_dssp CCTTSCCEEEEECSSSTT---HHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTT---------TCCCEEC---CHH
T ss_pred cCCCCceEEEEEeChHHh---HHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhc---------CCeEEEecCCCCH
Confidence 1 22333333333332 2334444555556789999999999999999999875 7889999999999
Q ss_pred HHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CC
Q 011751 300 EQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PG 378 (478)
Q Consensus 300 ~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G 378 (478)
++|..+++.|++|..+|||||+++++|+|+|++++||+ || .|.+..+|.||+|||||.| +|
T Consensus 317 ~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~--------~~----------~p~s~~~~~Qr~GR~gR~g~~g 378 (414)
T 3eiq_A 317 KERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN--------YD----------LPTNRENYIHRIGRGGRFGRKG 378 (414)
T ss_dssp HHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEE--------SS----------CCSSTHHHHHHSCCC-------
T ss_pred HHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEE--------eC----------CCCCHHHhhhhcCcccCCCCCc
Confidence 99999999999999999999999999999999999999 66 4788999999999999998 89
Q ss_pred eEEEecCHhhHhc
Q 011751 379 KCFRLYPENEFDK 391 (478)
Q Consensus 379 ~~~~l~~~~~~~~ 391 (478)
.|+.++++++...
T Consensus 379 ~~~~~~~~~~~~~ 391 (414)
T 3eiq_A 379 VAINMVTEEDKRT 391 (414)
T ss_dssp CEEEEECSTHHHH
T ss_pred eEEEEEcHHHHHH
Confidence 9999998776544
No 9
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=4.3e-39 Score=322.92 Aligned_cols=319 Identities=13% Similarity=0.155 Sum_probs=221.0
Q ss_pred hHHHhhhcCCcHHHHHHHHHHHhcC--CEEEEEcCCCCcHHhHHHHHHhhcCccC-CCcEEEEecchHHHHHHHHHHHHH
Q 011751 5 KILQQRKSLPIASVEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPRRVAAVTVAKRVAE 81 (478)
Q Consensus 5 ~~~~~~~~~~~~~~q~~~~~~l~~~--~~~~i~apTGsGKT~~~~~~~~~~~~~~-~~~~i~~~~p~~~l~~~~~~~~~~ 81 (478)
+.+...+...++++|.++++.+..+ +++++++|||||||.++..+++...... .+.+++++.|+++++.|+.+.+.+
T Consensus 38 ~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 117 (412)
T 3fht_A 38 QGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQ 117 (412)
T ss_dssp HHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHH
Confidence 4445556667899999999999987 9999999999999987767666554432 345799999999999999998877
Q ss_pred HhCCcCCCEEEEEEeecc-----------cCChhhhHHHHhhC---cCcCCCcceEeecccccchhhhHHHHHHHHHHHh
Q 011751 82 ESGVELGQRVGYSIRFDD-----------RTSTSTRIKEALLD---PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNA 147 (478)
Q Consensus 82 ~~~~~~~~~vg~~~~~~~-----------~~~~~~~~~~~l~~---~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~ 147 (478)
......+..+++...... .+.+..++..++.. ..+.+++++|+||||........ ...+..+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~-~~~~~~~~-- 194 (412)
T 3fht_A 118 MGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGH-QDQSIRIQ-- 194 (412)
T ss_dssp HTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTT-HHHHHHHH--
T ss_pred HHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCc-HHHHHHHH--
Confidence 655433445554432211 12233444444422 33578999999999942111100 00011111
Q ss_pred hcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChh--HHH-hhhCCCCeEEeCCcc--
Q 011751 148 RSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--GFS-EYFGCAKAVHVQGRQ-- 222 (478)
Q Consensus 148 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~--~~~-~~~~~~~~~~~~~~~-- 222 (478)
.. ...+.++++||||++.. .+. .++.....+......
T Consensus 195 ----------------------------------~~----~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (412)
T 3fht_A 195 ----------------------------------RM----LPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEET 236 (412)
T ss_dssp ----------------------------------HT----SCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSS
T ss_pred ----------------------------------hh----CCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeecccccc
Confidence 11 11567999999999543 333 455544444333222
Q ss_pred -ccceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHH
Q 011751 223 -FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQ 301 (478)
Q Consensus 223 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~ 301 (478)
..+...+...... ......+.........+++||||+++++++.++..|.+. ++.+..+||+++.++
T Consensus 237 ~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~ 304 (412)
T 3fht_A 237 LDTIKQYYVLCSSR---DEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE---------GHQVALLSGEMMVEQ 304 (412)
T ss_dssp CTTEEEEEEECSSH---HHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHT---------TCCCEEECTTSCHHH
T ss_pred ccCceEEEEEcCCh---HHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhC---------CCeEEEecCCCCHHH
Confidence 2223333332222 223334444444445789999999999999999999886 778999999999999
Q ss_pred HHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeE
Q 011751 302 QMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKC 380 (478)
Q Consensus 302 r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~ 380 (478)
|..+++.|++|+.+|||||+++++|+|+|++++||+ ||...... .+.|..+|+||+|||||.| .|.|
T Consensus 305 r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~--------~~~p~~~~----~~~s~~~~~Qr~GR~gR~g~~g~~ 372 (412)
T 3fht_A 305 RAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN--------FDLPVDKD----GNPDNETYLHRIGRTGRFGKRGLA 372 (412)
T ss_dssp HHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEE--------SSCCBCSS----SSBCHHHHHHHHTTSSCTTCCEEE
T ss_pred HHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEE--------ECCCCCCC----CCcchheeecccCcccCCCCCceE
Confidence 999999999999999999999999999999999999 55211100 1268899999999999998 7999
Q ss_pred EEecCHhh
Q 011751 381 FRLYPENE 388 (478)
Q Consensus 381 ~~l~~~~~ 388 (478)
+.+++..+
T Consensus 373 ~~~~~~~~ 380 (412)
T 3fht_A 373 VNMVDSKH 380 (412)
T ss_dssp EEEECSHH
T ss_pred EEEEcChh
Confidence 99997553
No 10
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.1e-39 Score=324.64 Aligned_cols=318 Identities=17% Similarity=0.193 Sum_probs=215.6
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCcc-------------------CCCcEEEE
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC-------------------RDGKLIGV 64 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~-------------------~~~~~i~~ 64 (478)
++.+...+...++++|.++++.+..|++++++||||||||..+...++..... ..+..+++
T Consensus 27 ~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 106 (417)
T 2i4i_A 27 MGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLV 106 (417)
T ss_dssp HHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEE
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEE
Confidence 34455566678999999999999999999999999999996555544432211 11356999
Q ss_pred ecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeec--------------ccCChhhhHHHHhhC--cCcCCCcceEeeccc
Q 011751 65 TQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFD--------------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAH 128 (478)
Q Consensus 65 ~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~--------------~~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H 128 (478)
+.|+++++.|+.+.+.+.... .+..++...... ..+.+..++...+.. ..+.+++++|+||||
T Consensus 107 l~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah 185 (417)
T 2i4i_A 107 LAPTRELAVQIYEEARKFSYR-SRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEAD 185 (417)
T ss_dssp ECSSHHHHHHHHHHHHHHHTT-SSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHH
T ss_pred ECCcHHHHHHHHHHHHHHhCc-CCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChh
Confidence 999999999999988776542 223333221111 112233334333333 347889999999999
Q ss_pred ccchhhhHHHHHHHHHHHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCCh--hHH
Q 011751 129 ERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RGF 206 (478)
Q Consensus 129 ~r~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~--~~~ 206 (478)
.. ++.++...+..++...........++++||||++. +.+
T Consensus 186 ~~--------------------------------------~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~ 227 (417)
T 2i4i_A 186 RM--------------------------------------LDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQML 227 (417)
T ss_dssp HH--------------------------------------HHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHH
T ss_pred Hh--------------------------------------hccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHH
Confidence 31 11111111111111111111136789999999943 333
Q ss_pred H-hhhCCCCeEEeCCc---cccceEEecCCCCcchHHHHHHHHHHhhhc-CCCCCEEEEcCCHHHHHHHHHHHHHHHhcC
Q 011751 207 S-EYFGCAKAVHVQGR---QFPVEILYTLYPEPDYLDATLITIFQVHLD-EAPGDILVFLTGQEEIESVERLVQERLLQL 281 (478)
Q Consensus 207 ~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~ 281 (478)
. .|+++...+.+... ...+...+......+... .+..+... ..++++||||+++++++.+++.|.+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---- 299 (417)
T 2i4i_A 228 ARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRS----FLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE---- 299 (417)
T ss_dssp HHHHCSSCEEEEEC----CCSSEEEEEEECCGGGHHH----HHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHT----
T ss_pred HHHHcCCCEEEEeCCCCCCccCceEEEEEeccHhHHH----HHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHC----
Confidence 3 45554433333221 112233333333333222 22222222 35778999999999999999999886
Q ss_pred CCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecC
Q 011751 282 PEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPIS 361 (478)
Q Consensus 282 ~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s 361 (478)
++.+..+||+++.++|..+++.|++|+.+|||||+++++|+|+|++++||+ || .|.|
T Consensus 300 -----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~--------~~----------~p~s 356 (417)
T 2i4i_A 300 -----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVIN--------FD----------LPSD 356 (417)
T ss_dssp -----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEE--------SS----------CCSS
T ss_pred -----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEE--------Ec----------CCCC
Confidence 788999999999999999999999999999999999999999999999999 66 4789
Q ss_pred HHHHHHhhcccCCCC-CCeEEEecCHhhHhc
Q 011751 362 KAQALQRSGRAGREG-PGKCFRLYPENEFDK 391 (478)
Q Consensus 362 ~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~~~ 391 (478)
..+|+||+|||||.| .|.|+.++++++...
T Consensus 357 ~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 387 (417)
T 2i4i_A 357 IEEYVHRIGRTGRVGNLGLATSFFNERNINI 387 (417)
T ss_dssp HHHHHHHHTTBCC--CCEEEEEEECGGGGGG
T ss_pred HHHHHHhcCccccCCCCceEEEEEccccHHH
Confidence 999999999999998 899999999876544
No 11
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.1e-38 Score=314.85 Aligned_cols=312 Identities=18% Similarity=0.252 Sum_probs=224.6
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcC-CEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHH
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKN-DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~-~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~ 82 (478)
++.++..+...++++|.++++.+.++ +++++.+|||||||+++..++........+.+++++.|+++++.|+.+.+.+.
T Consensus 18 ~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 97 (367)
T 1hv8_A 18 LNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESL 97 (367)
T ss_dssp HHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHH
Confidence 34455566668999999999999988 79999999999999887777766554445678999999999999999999887
Q ss_pred hCCcCCCEEEEEEeecc-------------cCChhhhHHHHhhC--cCcCCCcceEeecccccchhhhHHHHHHHHHHHh
Q 011751 83 SGVELGQRVGYSIRFDD-------------RTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNA 147 (478)
Q Consensus 83 ~~~~~~~~vg~~~~~~~-------------~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~ 147 (478)
.+.. +..++....... ...+...+...+.. ..+.+++++|+||||...... +...+..+..
T Consensus 98 ~~~~-~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~--~~~~~~~~~~- 173 (367)
T 1hv8_A 98 KGNK-NLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMG--FIKDVEKILN- 173 (367)
T ss_dssp HCSS-CCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTT--THHHHHHHHH-
T ss_pred hCCC-CceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhc--hHHHHHHHHH-
Confidence 6643 222322211110 11222233333332 347889999999999532111 1111111111
Q ss_pred hcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChh---HHHhhhCCCCeEEeCCcccc
Q 011751 148 RSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR---GFSEYFGCAKAVHVQGRQFP 224 (478)
Q Consensus 148 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~---~~~~~~~~~~~~~~~~~~~~ 224 (478)
. ...+.++++||||++.+ .+..++++...+.. .....
T Consensus 174 -----------------------------------~----~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~-~~~~~ 213 (367)
T 1hv8_A 174 -----------------------------------A----CNKDKRILLFSATMPREILNLAKKYMGDYSFIKA-KINAN 213 (367)
T ss_dssp -----------------------------------T----SCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEEC-CSSSS
T ss_pred -----------------------------------h----CCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEe-cCCCC
Confidence 1 11567999999999554 33456665433332 22334
Q ss_pred ceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHh
Q 011751 225 VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMR 304 (478)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~ 304 (478)
+...+......+.... +..... ..++++||||+++++++.+++.|.+. ++.+..+||+++.++|..
T Consensus 214 ~~~~~~~~~~~~~~~~----l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~ 279 (367)
T 1hv8_A 214 IEQSYVEVNENERFEA----LCRLLK-NKEFYGLVFCKTKRDTKELASMLRDI---------GFKAGAIHGDLSQSQREK 279 (367)
T ss_dssp SEEEEEECCGGGHHHH----HHHHHC-STTCCEEEECSSHHHHHHHHHHHHHT---------TCCEEEECSSSCHHHHHH
T ss_pred ceEEEEEeChHHHHHH----HHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhc---------CCCeEEeeCCCCHHHHHH
Confidence 4555544444443333 223322 45788999999999999999999886 778999999999999999
Q ss_pred hcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEEe
Q 011751 305 VFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRL 383 (478)
Q Consensus 305 i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l 383 (478)
+++.|++|+.+|||||+++++|+|+|++++||+ || .|.|..+|.||+|||||.| +|.|+.+
T Consensus 280 ~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~--------~~----------~~~s~~~~~Q~~GR~~R~g~~g~~~~~ 341 (367)
T 1hv8_A 280 VIRLFKQKKIRILIATDVMSRGIDVNDLNCVIN--------YH----------LPQNPESYMHRIGRTGRAGKKGKAISI 341 (367)
T ss_dssp HHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEE--------SS----------CCSCHHHHHHHSTTTCCSSSCCEEEEE
T ss_pred HHHHHHcCCCeEEEECChhhcCCCcccCCEEEE--------ec----------CCCCHHHhhhcccccccCCCccEEEEE
Confidence 999999999999999999999999999999999 55 4789999999999999998 9999999
Q ss_pred cCHhhHhc
Q 011751 384 YPENEFDK 391 (478)
Q Consensus 384 ~~~~~~~~ 391 (478)
++++++..
T Consensus 342 ~~~~~~~~ 349 (367)
T 1hv8_A 342 INRREYKK 349 (367)
T ss_dssp ECTTSHHH
T ss_pred EcHHHHHH
Confidence 98876654
No 12
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2.1e-38 Score=315.94 Aligned_cols=319 Identities=16% Similarity=0.180 Sum_probs=220.6
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcC--CEEEEEcCCCCcHHhHHHHHHhhcCccC-CCcEEEEecchHHHHHHHHHHHH
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPRRVAAVTVAKRVA 80 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~--~~~~i~apTGsGKT~~~~~~~~~~~~~~-~~~~i~~~~p~~~l~~~~~~~~~ 80 (478)
++.+...+...++++|.++++.+..+ +++++++|||||||.++..+++...... .+.+++++.|+++++.|+.+.+.
T Consensus 17 ~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 96 (395)
T 3pey_A 17 LKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQ 96 (395)
T ss_dssp HHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHH
Confidence 34455566778999999999999998 9999999999999988777776654332 35679999999999999999887
Q ss_pred HHhCCcCCCEEEEEEee----------cccCChhhhHHHHhhC--cCcCCCcceEeecccccchhhhHHHHHHHHHHHhh
Q 011751 81 EESGVELGQRVGYSIRF----------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (478)
Q Consensus 81 ~~~~~~~~~~vg~~~~~----------~~~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~ 148 (478)
+.... .+..++..... +....+...+...+.. ..+.+++++|+||||......... ..+..+...
T Consensus 97 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~-~~~~~~~~~- 173 (395)
T 3pey_A 97 EMGKF-TKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLG-DQCIRVKRF- 173 (395)
T ss_dssp HHTTT-SCCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHH-HHHHHHHHT-
T ss_pred HHhcc-cCeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccH-HHHHHHHHh-
Confidence 65432 22333322111 1112233344444332 347889999999999533211111 111111111
Q ss_pred cccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCCh--hHHHh-hhCCCCeEEeCCccc--
Q 011751 149 SKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RGFSE-YFGCAKAVHVQGRQF-- 223 (478)
Q Consensus 149 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~--~~~~~-~~~~~~~~~~~~~~~-- 223 (478)
...+.++++||||++. ..+.. ++.....+.......
T Consensus 174 ---------------------------------------~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (395)
T 3pey_A 174 ---------------------------------------LPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNV 214 (395)
T ss_dssp ---------------------------------------SCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSC
T ss_pred ---------------------------------------CCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEcccccccc
Confidence 1156799999999943 34443 444433333332222
Q ss_pred -cceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHH
Q 011751 224 -PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQ 302 (478)
Q Consensus 224 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r 302 (478)
.+...+..... .......+..+....+.+++||||++++.++.+++.|++. ++.+..+||+++.++|
T Consensus 215 ~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~---------~~~~~~~~~~~~~~~r 282 (395)
T 3pey_A 215 DAIKQLYMDCKN---EADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSE---------GHEVSILHGDLQTQER 282 (395)
T ss_dssp TTEEEEEEECSS---HHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHT---------TCCCEEECTTSCHHHH
T ss_pred ccccEEEEEcCc---hHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhc---------CCcEEEeCCCCCHHHH
Confidence 12222222222 2223344444555556789999999999999999999886 7789999999999999
Q ss_pred HhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEE
Q 011751 303 MRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCF 381 (478)
Q Consensus 303 ~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~ 381 (478)
..+++.|++|+.+|||||+++++|+|+|++++||+ ||.... ...+.|..+|+||+|||||.| .|.|+
T Consensus 283 ~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~--------~~~p~~----~~~~~s~~~~~Qr~GR~gR~g~~g~~~ 350 (395)
T 3pey_A 283 DRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVN--------YDLPTL----ANGQADPATYIHRIGRTGRFGRKGVAI 350 (395)
T ss_dssp HHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEE--------SSCCBC----TTSSBCHHHHHHHHTTSSCTTCCEEEE
T ss_pred HHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEE--------cCCCCC----CcCCCCHHHhhHhccccccCCCCceEE
Confidence 99999999999999999999999999999999999 553211 112359999999999999999 79999
Q ss_pred EecCHhh
Q 011751 382 RLYPENE 388 (478)
Q Consensus 382 ~l~~~~~ 388 (478)
.+++..+
T Consensus 351 ~~~~~~~ 357 (395)
T 3pey_A 351 SFVHDKN 357 (395)
T ss_dssp EEECSHH
T ss_pred EEEechH
Confidence 9997543
No 13
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.7e-39 Score=324.42 Aligned_cols=313 Identities=14% Similarity=0.247 Sum_probs=219.1
Q ss_pred HHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCcc-CCCcEEEEecchHHHHHHHHHHHHHHhC
Q 011751 6 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC-RDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (478)
Q Consensus 6 ~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~-~~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (478)
.+...+.-.++++|+++++.+.+|+++++++|||||||.++...++..... ..+.+++++.|+++++.|+.+.+.+...
T Consensus 51 ~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 130 (410)
T 2j0s_A 51 GIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGD 130 (410)
T ss_dssp HHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhc
Confidence 333444456899999999999999999999999999997777776655432 2356899999999999999998876543
Q ss_pred CcCCCEEEEEEeec--------------ccCChhhhHHHHhhC--cCcCCCcceEeecccccchhhhHHHHHHHHHHHhh
Q 011751 85 VELGQRVGYSIRFD--------------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (478)
Q Consensus 85 ~~~~~~vg~~~~~~--------------~~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~ 148 (478)
..+..++...... ....+..++...+.. ..+.+++++|+||||.
T Consensus 131 -~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~------------------- 190 (410)
T 2j0s_A 131 -YMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADE------------------- 190 (410)
T ss_dssp -TTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH-------------------
T ss_pred -cCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHH-------------------
Confidence 3334443322111 111223333333333 3467899999999994
Q ss_pred cccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChhH--H-HhhhCCCCeEEeCCcc---
Q 011751 149 SKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARG--F-SEYFGCAKAVHVQGRQ--- 222 (478)
Q Consensus 149 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~--~-~~~~~~~~~~~~~~~~--- 222 (478)
+.+.++...+..++..+ .++.+++++|||++.+. + ..++.++..+.+....
T Consensus 191 -------------------~~~~~~~~~~~~i~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (410)
T 2j0s_A 191 -------------------MLNKGFKEQIYDVYRYL----PPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTL 247 (410)
T ss_dssp -------------------HTSTTTHHHHHHHHTTS----CTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSC
T ss_pred -------------------HHhhhhHHHHHHHHHhC----ccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccC
Confidence 22222111111122222 25689999999995532 2 3455444333332221
Q ss_pred ccceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHH
Q 011751 223 FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQ 302 (478)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r 302 (478)
..+...+......+.... .+..+......+++||||++++.++.+++.|.+. ++.+..+||++++++|
T Consensus 248 ~~~~~~~~~~~~~~~k~~---~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~h~~~~~~~r 315 (410)
T 2j0s_A 248 EGIKQFFVAVEREEWKFD---TLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA---------NFTVSSMHGDMPQKER 315 (410)
T ss_dssp TTEEEEEEEESSTTHHHH---HHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHT---------TCCCEEECTTSCHHHH
T ss_pred CCceEEEEEeCcHHhHHH---HHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhC---------CCceEEeeCCCCHHHH
Confidence 223333333333332222 2223333334678999999999999999999886 7789999999999999
Q ss_pred HhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEE
Q 011751 303 MRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCF 381 (478)
Q Consensus 303 ~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~ 381 (478)
..+++.|++|..+|||||+++++|+|+|++++||+ || .|.+..+|+||+|||||.| +|.|+
T Consensus 316 ~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~--------~~----------~p~s~~~~~Qr~GR~gR~g~~g~~~ 377 (410)
T 2j0s_A 316 ESIMKEFRSGASRVLISTDVWARGLDVPQVSLIIN--------YD----------LPNNRELYIHRIGRSGRYGRKGVAI 377 (410)
T ss_dssp HHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEE--------SS----------CCSSHHHHHHHHTTSSGGGCCEEEE
T ss_pred HHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEE--------EC----------CCCCHHHHHHhcccccCCCCceEEE
Confidence 99999999999999999999999999999999999 66 4789999999999999998 99999
Q ss_pred EecCHhhHhc
Q 011751 382 RLYPENEFDK 391 (478)
Q Consensus 382 ~l~~~~~~~~ 391 (478)
.++++++...
T Consensus 378 ~~~~~~~~~~ 387 (410)
T 2j0s_A 378 NFVKNDDIRI 387 (410)
T ss_dssp EEEEGGGHHH
T ss_pred EEecHHHHHH
Confidence 9998776443
No 14
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-40 Score=360.87 Aligned_cols=320 Identities=17% Similarity=0.191 Sum_probs=225.7
Q ss_pred hhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCC
Q 011751 9 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELG 88 (478)
Q Consensus 9 ~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~ 88 (478)
....|+++++|.++++.+..|++++++||||||||+++.+++..... .+.+++|++|+++|+.|+.+++.+.++
T Consensus 179 ~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~--~g~rvlvl~PtraLa~Q~~~~l~~~~~---- 252 (1108)
T 3l9o_A 179 RTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK--NKQRVIYTSPIKALSNQKYRELLAEFG---- 252 (1108)
T ss_dssp SCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHHHHHHTS----
T ss_pred HhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh--cCCeEEEEcCcHHHHHHHHHHHHHHhC----
Confidence 45567899999999999999999999999999999888777776542 356899999999999999999988776
Q ss_pred CEEEEEEeec-------ccCChhhhHHHHhhC--cCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccCCCCCC
Q 011751 89 QRVGYSIRFD-------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGN 159 (478)
Q Consensus 89 ~~vg~~~~~~-------~~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 159 (478)
.+|+..+.. ..+.+..++..++.. ..+.++++|||||||.
T Consensus 253 -~VglltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~------------------------------ 301 (1108)
T 3l9o_A 253 -DVGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHY------------------------------ 301 (1108)
T ss_dssp -SEEEECSSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGG------------------------------
T ss_pred -CccEEeCccccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhh------------------------------
Confidence 244322111 112333444444332 2377899999999993
Q ss_pred CCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC-ChhHHHhhhCC-----CCeEEeCCccccceEEecCCC
Q 011751 160 NNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGC-----AKAVHVQGRQFPVEILYTLYP 233 (478)
Q Consensus 160 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~-~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 233 (478)
+.+.+++..+..++..++ .++++|+||||+ +...+++|++. ..++..+.+..|+..++....
T Consensus 302 --------l~d~~rg~~~e~ii~~l~----~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~ 369 (1108)
T 3l9o_A 302 --------MRDKERGVVWEETIILLP----DKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAH 369 (1108)
T ss_dssp --------TTSHHHHHHHHHHHHHSC----TTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETT
T ss_pred --------ccccchHHHHHHHHHhcC----CCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecC
Confidence 333333333333343333 678999999999 88888888753 234445555566554432211
Q ss_pred C----------cch----H-------------------------------------HHHHHHHHHhhhcCCCCCEEEEcC
Q 011751 234 E----------PDY----L-------------------------------------DATLITIFQVHLDEAPGDILVFLT 262 (478)
Q Consensus 234 ~----------~~~----~-------------------------------------~~~~~~~~~~~~~~~~~~~LVF~~ 262 (478)
. ..+ . ...+..++........+++||||+
T Consensus 370 ~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~ 449 (1108)
T 3l9o_A 370 GDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSF 449 (1108)
T ss_dssp SSCCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeC
Confidence 0 000 0 222333444444556789999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCCC---------------------C---------CCeEEEEccCCCCHHHHHhhcCcCCCC
Q 011751 263 GQEEIESVERLVQERLLQLPEA---------------------S---------RKLVTVPIFSSLPSEQQMRVFAPAAAG 312 (478)
Q Consensus 263 s~~~~~~l~~~l~~~~~~~~~~---------------------~---------~~~~v~~~h~~l~~~~r~~i~~~f~~g 312 (478)
+++.|+.++..|.......... . ....+..+||+|++.+|..+++.|++|
T Consensus 450 sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G 529 (1108)
T 3l9o_A 450 SKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEG 529 (1108)
T ss_dssp CHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCC
Confidence 9999999999886531110000 0 011288899999999999999999999
Q ss_pred ccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC---CCeEEEecCHh
Q 011751 313 FRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPEN 387 (478)
Q Consensus 313 ~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~ 387 (478)
.++|||||+++++|||+|++++||++. ..||+. ...|.|..+|+||+|||||.| .|.||.++++.
T Consensus 530 ~ikVLVAT~vla~GIDiP~v~~VI~~~----~~~d~~------~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 530 FLKVLFATETFSIGLNMPAKTVVFTSV----RKWDGQ------QFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp CCCEEEEESCCCSCCCC--CEEEESCS----EEESSS------CEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred CCeEEEECcHHhcCCCCCCceEEEecC----cccCcc------ccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 999999999999999999999999832 223322 125889999999999999999 89999999654
No 15
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.8e-37 Score=308.96 Aligned_cols=312 Identities=15% Similarity=0.185 Sum_probs=219.7
Q ss_pred hHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccC-CCcEEEEecchHHHHHHHHHHHHHHh
Q 011751 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPRRVAAVTVAKRVAEES 83 (478)
Q Consensus 5 ~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~-~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (478)
+.+...+.-.++++|.++++.+.+++++++++|||+|||.++..++....... .+.+++++.|+++++.|+.+.+.+..
T Consensus 21 ~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 100 (391)
T 1xti_A 21 RAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFS 100 (391)
T ss_dssp HHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHH
Confidence 33444444459999999999999999999999999999977666665543322 35579999999999999999887775
Q ss_pred CCcCCCEEEEEEeec---------------ccCChhhhHHHHhhC--cCcCCCcceEeecccccchhhhHHHHHHHHHHH
Q 011751 84 GVELGQRVGYSIRFD---------------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQN 146 (478)
Q Consensus 84 ~~~~~~~vg~~~~~~---------------~~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~ 146 (478)
....+..++...... ....+...+..++.. ..+.+++++|+||||....+... ...+..+..
T Consensus 101 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~-~~~~~~~~~ 179 (391)
T 1xti_A 101 KYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDM-RRDVQEIFR 179 (391)
T ss_dssp TTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHH-HHHHHHHHH
T ss_pred hhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccch-HHHHHHHHh
Confidence 543234444332211 111222333333322 34788999999999954332111 111222111
Q ss_pred hhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCCh--hH-HHhhhCCCCeEEeCCcc-
Q 011751 147 ARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RG-FSEYFGCAKAVHVQGRQ- 222 (478)
Q Consensus 147 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~--~~-~~~~~~~~~~~~~~~~~- 222 (478)
.. ..+.++++||||++. .. +..++..+..+......
T Consensus 180 ~~----------------------------------------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (391)
T 1xti_A 180 MT----------------------------------------PHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETK 219 (391)
T ss_dssp TS----------------------------------------CSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCC
T ss_pred hC----------------------------------------CCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccc
Confidence 11 156799999999933 33 34566555444433221
Q ss_pred ---ccceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCH
Q 011751 223 ---FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPS 299 (478)
Q Consensus 223 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~ 299 (478)
..+...+...+..+.... +..+....+.+++||||+++++++.+++.|.+. ++.+..+||+++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~----l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~ 286 (391)
T 1xti_A 220 LTLHGLQQYYVKLKDNEKNRK----LFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ---------NFPAIAIHRGMPQ 286 (391)
T ss_dssp CCCTTCEEEEEECCGGGHHHH----HHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHT---------TCCEEEECTTSCH
T ss_pred cCcccceEEEEEcCchhHHHH----HHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhC---------CCcEEEEeCCCCH
Confidence 223333333333333222 223333346789999999999999999999886 7789999999999
Q ss_pred HHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CC
Q 011751 300 EQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PG 378 (478)
Q Consensus 300 ~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G 378 (478)
++|..+++.|++|..+|||||+++++|+|+|++++||+ || .|.|..+|.||+|||||.| +|
T Consensus 287 ~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~--------~~----------~p~s~~~~~Qr~GR~~R~g~~g 348 (391)
T 1xti_A 287 EERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN--------YD----------MPEDSDTYLHRVARAGRFGTKG 348 (391)
T ss_dssp HHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEE--------SS----------CCSSHHHHHHHHCBCSSSCCCC
T ss_pred HHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEE--------eC----------CCCCHHHHHHhcccccCCCCce
Confidence 99999999999999999999999999999999999999 55 4789999999999999998 99
Q ss_pred eEEEecCHhh
Q 011751 379 KCFRLYPENE 388 (478)
Q Consensus 379 ~~~~l~~~~~ 388 (478)
.|+.++++++
T Consensus 349 ~~~~~~~~~~ 358 (391)
T 1xti_A 349 LAITFVSDEN 358 (391)
T ss_dssp EEEEEECSHH
T ss_pred EEEEEEcccc
Confidence 9999998654
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=4.5e-38 Score=326.42 Aligned_cols=302 Identities=17% Similarity=0.149 Sum_probs=212.9
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEE
Q 011751 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRV 91 (478)
Q Consensus 12 ~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~v 91 (478)
.-.++++|.++++.+.+|+++++++|||+|||.++...++.. ...++|+.|+++|+.++.+.+.+. +.. +
T Consensus 42 ~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~-----~g~~lVisP~~~L~~q~~~~l~~~-gi~----~ 111 (591)
T 2v1x_A 42 LEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS-----DGFTLVICPLISLMEDQLMVLKQL-GIS----A 111 (591)
T ss_dssp CCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-----SSEEEEECSCHHHHHHHHHHHHHH-TCC----E
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-----CCcEEEEeCHHHHHHHHHHHHHhc-CCc----E
Confidence 336789999999999999999999999999996554444432 347999999999999999988764 322 2
Q ss_pred EEEEeec--------------------ccCChhhhH------HHHhh-CcCcCCCcceEeecccccchhhhHHHHHHHHH
Q 011751 92 GYSIRFD--------------------DRTSTSTRI------KEALL-DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKV 144 (478)
Q Consensus 92 g~~~~~~--------------------~~~~~~~~~------~~~l~-~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~ 144 (478)
++..... ....+..++ ...+. ...+.++++|||||||+...+...
T Consensus 112 ~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~d-------- 183 (591)
T 2v1x_A 112 TMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHD-------- 183 (591)
T ss_dssp EECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTT--------
T ss_pred EEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccc--------
Confidence 2111000 000111111 11111 123568999999999953222110
Q ss_pred HHhhcccccCCCCCCCCCCCchhhhccCCCCCCcc--ccccccCCCCCCceEEEEcCCCCh---hHHHhhhCCCCeEEeC
Q 011751 145 QNARSKSADGHSNGNNNNENSDMILDRGNDTNGIN--TLKQCQGRKFAPLKLIIMSASLDA---RGFSEYFGCAKAVHVQ 219 (478)
Q Consensus 145 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~lSAT~~~---~~~~~~~~~~~~~~~~ 219 (478)
+...... .+... .++.++++||||++. +.+.++++......+.
T Consensus 184 ----------------------------fr~~~~~l~~l~~~----~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~ 231 (591)
T 2v1x_A 184 ----------------------------FRPDYKALGILKRQ----FPNASLIGLTATATNHVLTDAQKILCIEKCFTFT 231 (591)
T ss_dssp ----------------------------CCGGGGGGGHHHHH----CTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEE
T ss_pred ----------------------------cHHHHHHHHHHHHh----CCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEe
Confidence 1111111 11111 157899999999965 4566777765444444
Q ss_pred CccccceEEecCCCCcchHHHHHHHHHHhhhc-CCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCC
Q 011751 220 GRQFPVEILYTLYPEPDYLDATLITIFQVHLD-EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLP 298 (478)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~ 298 (478)
.......+.|............+..+...... .+++++||||+|+++++.++..|.+. ++.+..+||+|+
T Consensus 232 ~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~---------g~~~~~~h~~l~ 302 (591)
T 2v1x_A 232 ASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNL---------GIHAGAYHANLE 302 (591)
T ss_dssp CCCCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSC
T ss_pred cCCCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHC---------CCCEEEecCCCC
Confidence 33333334443333333333444445544432 35788999999999999999999886 888999999999
Q ss_pred HHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-C
Q 011751 299 SEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-P 377 (478)
Q Consensus 299 ~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~ 377 (478)
.++|..+++.|++|..+|||||+++++|||+|+|++||+ || .|.|.++|+||+|||||.| +
T Consensus 303 ~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~--------~~----------~p~s~~~y~Qr~GRaGR~G~~ 364 (591)
T 2v1x_A 303 PEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIH--------HS----------MSKSMENYYQESGRAGRDDMK 364 (591)
T ss_dssp HHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEE--------SS----------CCSSHHHHHHHHTTSCTTSSC
T ss_pred HHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEE--------eC----------CCCCHHHHHHHhccCCcCCCC
Confidence 999999999999999999999999999999999999999 66 5889999999999999999 9
Q ss_pred CeEEEecCHhhHh
Q 011751 378 GKCFRLYPENEFD 390 (478)
Q Consensus 378 G~~~~l~~~~~~~ 390 (478)
|.|+.+|+..+..
T Consensus 365 g~~i~l~~~~D~~ 377 (591)
T 2v1x_A 365 ADCILYYGFGDIF 377 (591)
T ss_dssp EEEEEEECHHHHH
T ss_pred ceEEEEEChHHHH
Confidence 9999999876654
No 17
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=3.5e-38 Score=315.19 Aligned_cols=311 Identities=14% Similarity=0.163 Sum_probs=217.9
Q ss_pred HHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccC-CCcEEEEecchHHHHHHHHHHHHHHhCC
Q 011751 7 LQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPRRVAAVTVAKRVAEESGV 85 (478)
Q Consensus 7 ~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~-~~~~i~~~~p~~~l~~~~~~~~~~~~~~ 85 (478)
+...+.-.++++|.++++.+.+++++++++|||||||+++..+++...... .+.+++++.|+++++.|+.+.+.+....
T Consensus 36 l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 115 (400)
T 1s2m_A 36 IFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKH 115 (400)
T ss_dssp HHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred HHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcc
Confidence 333444458999999999999999999999999999977766666544332 3557999999999999999988766542
Q ss_pred cCCCEEEEEEeecc--------------cCChhhhHHHHhhC--cCcCCCcceEeecccccchhhhHHHHHHHHHHHhhc
Q 011751 86 ELGQRVGYSIRFDD--------------RTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARS 149 (478)
Q Consensus 86 ~~~~~vg~~~~~~~--------------~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~ 149 (478)
.+..++....... ...+...+...+.. ..+.+++++|+||||..... .+...+..+...
T Consensus 116 -~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~--~~~~~~~~i~~~-- 190 (400)
T 1s2m_A 116 -CGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSR--DFKTIIEQILSF-- 190 (400)
T ss_dssp -TTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSH--HHHHHHHHHHTT--
T ss_pred -cCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhh--chHHHHHHHHHh--
Confidence 2333433221110 11222333333332 34788999999999942211 111222222111
Q ss_pred ccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChh---HHHhhhCCCCeEEeCCcc--cc
Q 011751 150 KSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR---GFSEYFGCAKAVHVQGRQ--FP 224 (478)
Q Consensus 150 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~---~~~~~~~~~~~~~~~~~~--~~ 224 (478)
..+..++++||||++.. .+..++..+..+...... ..
T Consensus 191 --------------------------------------~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (400)
T 1s2m_A 191 --------------------------------------LPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKG 232 (400)
T ss_dssp --------------------------------------SCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTT
T ss_pred --------------------------------------CCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccccccCC
Confidence 11567999999999543 234555443222222211 12
Q ss_pred ceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHh
Q 011751 225 VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMR 304 (478)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~ 304 (478)
+...+......... ..+..+....+.+++||||+++++++.+++.|.+. ++.+..+||+++.++|..
T Consensus 233 ~~~~~~~~~~~~k~----~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~ 299 (400)
T 1s2m_A 233 ITQYYAFVEERQKL----HCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDL---------GYSCYYSHARMKQQERNK 299 (400)
T ss_dssp EEEEEEECCGGGHH----HHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHH---------TCCEEEECTTSCHHHHHH
T ss_pred ceeEEEEechhhHH----HHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhc---------CCCeEEecCCCCHHHHHH
Confidence 23333322222222 22233333345789999999999999999999987 788999999999999999
Q ss_pred hcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEEe
Q 011751 305 VFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRL 383 (478)
Q Consensus 305 i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l 383 (478)
+++.|++|..+|||||+++++|+|+|++++||+ || .|.+..+|+||+|||||.| +|.|+.+
T Consensus 300 ~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~--------~~----------~p~s~~~~~Qr~GR~gR~g~~g~~~~l 361 (400)
T 1s2m_A 300 VFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVIN--------FD----------FPKTAETYLHRIGRSGRFGHLGLAINL 361 (400)
T ss_dssp HHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEE--------SS----------CCSSHHHHHHHHCBSSCTTCCEEEEEE
T ss_pred HHHHHhcCCCcEEEEcCccccCCCccCCCEEEE--------eC----------CCCCHHHHHHhcchhcCCCCCceEEEE
Confidence 999999999999999999999999999999999 66 4789999999999999998 9999999
Q ss_pred cCHhhHhc
Q 011751 384 YPENEFDK 391 (478)
Q Consensus 384 ~~~~~~~~ 391 (478)
+++++...
T Consensus 362 ~~~~~~~~ 369 (400)
T 1s2m_A 362 INWNDRFN 369 (400)
T ss_dssp ECGGGHHH
T ss_pred eccchHHH
Confidence 99887544
No 18
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-38 Score=345.86 Aligned_cols=319 Identities=18% Similarity=0.236 Sum_probs=227.2
Q ss_pred hhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCC
Q 011751 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ 89 (478)
Q Consensus 10 ~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~ 89 (478)
...|.++++|.+++..+.+|++++++||||||||+++..++.... ..+.+++|+.|+++|+.|..+.+.+.++ .
T Consensus 82 ~~~f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l--~~g~rvL~l~PtkaLa~Q~~~~l~~~~~-~--- 155 (1010)
T 2xgj_A 82 TYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSL--KNKQRVIYTSPIKALSNQKYRELLAEFG-D--- 155 (1010)
T ss_dssp CCSSCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHH--HTTCEEEEEESSHHHHHHHHHHHHHHHS-C---
T ss_pred hCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHh--ccCCeEEEECChHHHHHHHHHHHHHHhC-C---
Confidence 345679999999999999999999999999999977766555433 2356899999999999999999988876 2
Q ss_pred EEEEEEee-------cccCChhhhHHHHhh--CcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccCCCCCCC
Q 011751 90 RVGYSIRF-------DDRTSTSTRIKEALL--DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNN 160 (478)
Q Consensus 90 ~vg~~~~~-------~~~~~~~~~~~~~l~--~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 160 (478)
+|...+. +..+.+...+..++. ...+.++++|||||+|
T Consensus 156 -vglltGd~~~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH-------------------------------- 202 (1010)
T 2xgj_A 156 -VGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH-------------------------------- 202 (1010)
T ss_dssp -EEEECSSCEECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGG--------------------------------
T ss_pred -EEEEeCCCccCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechh--------------------------------
Confidence 3322111 111233344444332 3567899999999999
Q ss_pred CCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC-ChhHHHhhhC-----CCCeEEeCCccccceEEecCCC-
Q 011751 161 NNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFG-----CAKAVHVQGRQFPVEILYTLYP- 233 (478)
Q Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~- 233 (478)
.+.+..++..++.++..++ .+.++|+||||+ |...+++|++ ...++..+.+..|+..++...+
T Consensus 203 ------~l~d~~rg~~~e~il~~l~----~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~ 272 (1010)
T 2xgj_A 203 ------YMRDKERGVVWEETIILLP----DKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHG 272 (1010)
T ss_dssp ------GGGCTTTHHHHHHHHHHSC----TTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTS
T ss_pred ------hhcccchhHHHHHHHHhcC----CCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCC
Confidence 4555555555555555554 678999999999 8889999985 2234444555566554433211
Q ss_pred ---------Ccch----H-------------------------------------HHHHHHHHHhhhcCCCCCEEEEcCC
Q 011751 234 ---------EPDY----L-------------------------------------DATLITIFQVHLDEAPGDILVFLTG 263 (478)
Q Consensus 234 ---------~~~~----~-------------------------------------~~~~~~~~~~~~~~~~~~~LVF~~s 263 (478)
...+ . ...+..+.......+.+++||||++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~s 352 (1010)
T 2xgj_A 273 DGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFS 352 (1010)
T ss_dssp SCCEEEECTTCCBCHHHHHHHHHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESS
T ss_pred cceeeeeccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECC
Confidence 0000 0 1112223333333446699999999
Q ss_pred HHHHHHHHHHHHHHH------------------hcCCCCCC------------CeEEEEccCCCCHHHHHhhcCcCCCCc
Q 011751 264 QEEIESVERLVQERL------------------LQLPEASR------------KLVTVPIFSSLPSEQQMRVFAPAAAGF 313 (478)
Q Consensus 264 ~~~~~~l~~~l~~~~------------------~~~~~~~~------------~~~v~~~h~~l~~~~r~~i~~~f~~g~ 313 (478)
+..|+.++..|.+.. ..+..... ...+..+||+|++.+|..+++.|++|.
T Consensus 353 r~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ 432 (1010)
T 2xgj_A 353 KRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGF 432 (1010)
T ss_dssp HHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCC
Confidence 999999998885410 00000000 123788999999999999999999999
Q ss_pred cEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC---CCeEEEecCHh
Q 011751 314 RKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPEN 387 (478)
Q Consensus 314 ~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~ 387 (478)
++|||||+++++|||+|++++||+ ....||... ..|.|..+|.||+|||||.| .|.|+.++++.
T Consensus 433 ikVLVAT~~la~GIDiP~~~vVI~----~~~kfd~~~------~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 433 LKVLFATETFSIGLNMPAKTVVFT----SVRKWDGQQ------FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp CSEEEEEGGGGGSTTCCBSEEEES----CSEEECSSC------EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred CcEEEEehHhhccCCCCCceEEEe----CCcccCCcC------CccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 999999999999999999999998 345576322 24889999999999999999 49999999754
No 19
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=5.9e-39 Score=328.31 Aligned_cols=319 Identities=13% Similarity=0.148 Sum_probs=110.0
Q ss_pred hHHHhhhcCCcHHHHHHHHHHHhcC--CEEEEEcCCCCcHHhHHHHHHhhcCccCC-CcEEEEecchHHHHHHHHHHHHH
Q 011751 5 KILQQRKSLPIASVEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLFHAGFCRD-GKLIGVTQPRRVAAVTVAKRVAE 81 (478)
Q Consensus 5 ~~~~~~~~~~~~~~q~~~~~~l~~~--~~~~i~apTGsGKT~~~~~~~~~~~~~~~-~~~i~~~~p~~~l~~~~~~~~~~ 81 (478)
+.+...+...++++|.++++.+..+ ++++++||||||||.++.++++....... +..++++.|+++++.|+.+.+.+
T Consensus 105 ~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 184 (479)
T 3fmp_B 105 QGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQ 184 (479)
T ss_dssp HHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHH
Confidence 3444556667899999999999987 99999999999999887777766554332 44799999999999999888877
Q ss_pred HhCCcCCCEEEEEEeec-----------ccCChhhhHHHHhhC---cCcCCCcceEeecccccchhhhHHHHHHHHHHHh
Q 011751 82 ESGVELGQRVGYSIRFD-----------DRTSTSTRIKEALLD---PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNA 147 (478)
Q Consensus 82 ~~~~~~~~~vg~~~~~~-----------~~~~~~~~~~~~l~~---~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~ 147 (478)
......+..+++..... ..+.+..++..++.. ..+.++++||+||+|....... ....+..+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~-~~~~~~~i--- 260 (479)
T 3fmp_B 185 MGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQG-HQDQSIRI--- 260 (479)
T ss_dssp HHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTT-HHHHHHHH---
T ss_pred HHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCC-cHHHHHHH---
Confidence 65543334444332211 112334455455432 2358999999999994211110 00011111
Q ss_pred hcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChh--HHH-hhhCCCCeEEeCCcccc
Q 011751 148 RSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--GFS-EYFGCAKAVHVQGRQFP 224 (478)
Q Consensus 148 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~--~~~-~~~~~~~~~~~~~~~~~ 224 (478)
+. ....+.+++++|||++.+ .++ .++.+...+.+......
T Consensus 261 ---------------------------------~~----~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~ 303 (479)
T 3fmp_B 261 ---------------------------------QR----MLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEET 303 (479)
T ss_dssp ---------------------------------HT----TSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-----
T ss_pred ---------------------------------Hh----hCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccC
Confidence 11 111568999999999543 344 44544444444332221
Q ss_pred ---ceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHH
Q 011751 225 ---VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQ 301 (478)
Q Consensus 225 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~ 301 (478)
+...+...+.. ......+.........+++||||++++.++.++..|.+. ++.+..+||++++.+
T Consensus 304 ~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~---------~~~v~~lh~~~~~~~ 371 (479)
T 3fmp_B 304 LDTIKQYYVLCSSR---DEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE---------GHQVALLSGEMMVEQ 371 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCceEEEEEeCCH---HHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhC---------CccEEEecCCCCHHH
Confidence 11222221111 112233333444445788999999999999999999876 788999999999999
Q ss_pred HHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeE
Q 011751 302 QMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKC 380 (478)
Q Consensus 302 r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~ 380 (478)
|..+++.|++|..+|||||+++++|+|+|++++||+ ||...... .+.+..+|+||+|||||.| .|.|
T Consensus 372 R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~--------~d~p~~~~----~~~s~~~~~Qr~GRagR~g~~G~~ 439 (479)
T 3fmp_B 372 RAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN--------FDLPVDKD----GNPDNETYLHRIGRTGRFGKRGLA 439 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHcCCCcEEEEccccccCCccccCCEEEE--------ecCCCCCc----cCCCHHHHHHHhcccccCCCCceE
Confidence 999999999999999999999999999999999999 65221110 1257789999999999999 8999
Q ss_pred EEecCHhh
Q 011751 381 FRLYPENE 388 (478)
Q Consensus 381 ~~l~~~~~ 388 (478)
+.++++..
T Consensus 440 i~~~~~~~ 447 (479)
T 3fmp_B 440 VNMVDSKH 447 (479)
T ss_dssp --------
T ss_pred EEEEcCcc
Confidence 99997654
No 20
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=3.4e-38 Score=329.25 Aligned_cols=323 Identities=13% Similarity=0.171 Sum_probs=214.2
Q ss_pred HHhhhcCCcHHHHHHHHHHHh--cCCEEEEEcCCCCcHHhHHHHHHhhcCccC-----CCcEEEEecchHHHHHHHHHHH
Q 011751 7 LQQRKSLPIASVEKRLVEEVR--KNDILIIVGETGSGKTTQLPQFLFHAGFCR-----DGKLIGVTQPRRVAAVTVAKRV 79 (478)
Q Consensus 7 ~~~~~~~~~~~~q~~~~~~l~--~~~~~~i~apTGsGKT~~~~~~~~~~~~~~-----~~~~i~~~~p~~~l~~~~~~~~ 79 (478)
+...+.-.++++|.++++.+. .+++++++||||||||.++..+++...... .+.+++++.|+++++.|+.+.+
T Consensus 87 l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~ 166 (563)
T 3i5x_A 87 ITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEV 166 (563)
T ss_dssp HHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHH
Confidence 333444568999999999999 778999999999999966555554332221 1347999999999999999988
Q ss_pred HHHhCCcC---CCEEEEEEeec---------------ccCChhhhHHHHhh---CcCcCCCcceEeecccccchh--hhH
Q 011751 80 AEESGVEL---GQRVGYSIRFD---------------DRTSTSTRIKEALL---DPYLSRYSAIIVDEAHERTVH--TDV 136 (478)
Q Consensus 80 ~~~~~~~~---~~~vg~~~~~~---------------~~~~~~~~~~~~l~---~~~l~~~~~lIiDE~H~r~~~--~~~ 136 (478)
.+...... ...+....... ..+.+..++..++. ...+.++++||+||||+...+ ...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~ 246 (563)
T 3i5x_A 167 KKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDD 246 (563)
T ss_dssp HHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHH
T ss_pred HHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHH
Confidence 77532111 11121111111 11122233333222 135788999999999952211 111
Q ss_pred HHHHHHHHHHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCC--hhHHHhhhCCC-
Q 011751 137 LLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLD--ARGFSEYFGCA- 213 (478)
Q Consensus 137 ~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~--~~~~~~~~~~~- 213 (478)
+..++..+.... .....+.|+++||||++ ...+..++...
T Consensus 247 ~~~i~~~l~~~~-------------------------------------~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~ 289 (563)
T 3i5x_A 247 LETISGILNEKN-------------------------------------SKSADNIKTLLFSATLDDKVQKLANNIMNKK 289 (563)
T ss_dssp HHHHHHHHHHHC-------------------------------------SSCTTCCEEEEEESSCCTHHHHHTTTTCCSS
T ss_pred HHHHHHhhhhcc-------------------------------------ccCccCceEEEEEccCCHHHHHHHHHhcCCC
Confidence 111111111111 11125789999999994 35555544333
Q ss_pred CeEEeCCcc-------ccceEEecCC-CCcchHHHHHHHHHHhh-hcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCC
Q 011751 214 KAVHVQGRQ-------FPVEILYTLY-PEPDYLDATLITIFQVH-LDEAPGDILVFLTGQEEIESVERLVQERLLQLPEA 284 (478)
Q Consensus 214 ~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~ 284 (478)
..+.+.... ..+...+... .........+..+.... ...+++++||||+|++.++.++..|.+.+..
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~---- 365 (563)
T 3i5x_A 290 ECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK---- 365 (563)
T ss_dssp EEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTT----
T ss_pred ceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccC----
Confidence 333322110 1111222111 11222233333333332 2356789999999999999999999887542
Q ss_pred CCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHH
Q 011751 285 SRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQ 364 (478)
Q Consensus 285 ~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~ 364 (478)
++.+..+||+|++++|..+++.|++|+.+|||||+++++|+|+|++++||+ || .|.+..+
T Consensus 366 --~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~--------~~----------~p~s~~~ 425 (563)
T 3i5x_A 366 --DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ--------IG----------VPSELAN 425 (563)
T ss_dssp --TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE--------ES----------CCSSTTH
T ss_pred --CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEE--------EC----------CCCchhh
Confidence 677999999999999999999999999999999999999999999999999 77 5788999
Q ss_pred HHHhhcccCCCC-CCeEEEecCHhhHh
Q 011751 365 ALQRSGRAGREG-PGKCFRLYPENEFD 390 (478)
Q Consensus 365 ~~Qr~GRaGR~~-~G~~~~l~~~~~~~ 390 (478)
|+||+|||||.| .|.|+.++++.+..
T Consensus 426 y~Qr~GRagR~g~~g~~i~~~~~~e~~ 452 (563)
T 3i5x_A 426 YIHRIGRTARSGKEGSSVLFICKDELP 452 (563)
T ss_dssp HHHHHTTSSCTTCCEEEEEEEEGGGHH
T ss_pred hhhhcCccccCCCCceEEEEEchhHHH
Confidence 999999999999 89999999776543
No 21
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2.8e-39 Score=352.85 Aligned_cols=319 Identities=17% Similarity=0.188 Sum_probs=225.2
Q ss_pred hhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCC
Q 011751 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ 89 (478)
Q Consensus 10 ~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~ 89 (478)
...|+++++|.+++..+.+|++++++||||||||+++...+.... ..+.+++|+.|+++++.|+.+++.+.++ +.
T Consensus 35 ~~~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~--~~g~~vlvl~PtraLa~Q~~~~l~~~~~---~~ 109 (997)
T 4a4z_A 35 SWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAH--RNMTKTIYTSPIKALSNQKFRDFKETFD---DV 109 (997)
T ss_dssp CCSSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHH--HTTCEEEEEESCGGGHHHHHHHHHTTC-----C
T ss_pred hCCCCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHH--hcCCeEEEEeCCHHHHHHHHHHHHHHcC---CC
Confidence 345678999999999999999999999999999965444443321 2356799999999999999999887553 23
Q ss_pred EEEEEEeecc-------cCChhhhHHHHhh--CcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccCCCCCCC
Q 011751 90 RVGYSIRFDD-------RTSTSTRIKEALL--DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNN 160 (478)
Q Consensus 90 ~vg~~~~~~~-------~~~~~~~~~~~l~--~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 160 (478)
.++...+... ...+..++...+. ...+.++++|||||||
T Consensus 110 ~v~~l~G~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH-------------------------------- 157 (997)
T 4a4z_A 110 NIGLITGDVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH-------------------------------- 157 (997)
T ss_dssp CEEEECSSCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTT--------------------------------
T ss_pred eEEEEeCCCccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcc--------------------------------
Confidence 3333221111 1233344443332 2357889999999999
Q ss_pred CCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC-ChhHHHhhhCC-----CCeEEeCCccccceEEecCC--
Q 011751 161 NNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGC-----AKAVHVQGRQFPVEILYTLY-- 232 (478)
Q Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~-~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-- 232 (478)
.+.+.+++..++.++..++ +++++|+||||+ |..++++|++. ..++..+.+..|+..++...
T Consensus 158 ------~l~d~~~g~~~e~ii~~l~----~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~ 227 (997)
T 4a4z_A 158 ------YVNDQDRGVVWEEVIIMLP----QHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKE 227 (997)
T ss_dssp ------CCCTTCTTCCHHHHHHHSC----TTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTE
T ss_pred ------cccccchHHHHHHHHHhcc----cCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCc
Confidence 5666677777777777665 678999999999 89999999963 22444555666665443210
Q ss_pred ------CCcch---------------------------------------------------------------------
Q 011751 233 ------PEPDY--------------------------------------------------------------------- 237 (478)
Q Consensus 233 ------~~~~~--------------------------------------------------------------------- 237 (478)
....+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~ 307 (997)
T 4a4z_A 228 LIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIG 307 (997)
T ss_dssp EEEEECTTCCBCHHHHHHHHHHHC--------------------------------------------------------
T ss_pred chhcccchhhhhHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00000
Q ss_pred ------------HHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHH------------------hcCCC----
Q 011751 238 ------------LDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERL------------------LQLPE---- 283 (478)
Q Consensus 238 ------------~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~------------------~~~~~---- 283 (478)
....+..+.......+.+++||||+|+++|+.++..|.+.. ..+..
T Consensus 308 ~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~ 387 (997)
T 4a4z_A 308 SNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRD 387 (997)
T ss_dssp ---------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHT
T ss_pred ccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhc
Confidence 00112334444445567899999999999999998885410 00000
Q ss_pred --------CCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccc
Q 011751 284 --------ASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESL 355 (478)
Q Consensus 284 --------~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~ 355 (478)
......+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++.+|+. + ...||+.
T Consensus 388 l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi~-~---~~k~dg~------ 457 (997)
T 4a4z_A 388 LPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFS-S---IRKHDGN------ 457 (997)
T ss_dssp CHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEES-C---SEEEETT------
T ss_pred chhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceEEEe-c---cccccCc------
Confidence 000124788999999999999999999999999999999999999999777774 3 2335533
Q ss_pred eeeecCHHHHHHhhcccCCCC---CCeEEEecC
Q 011751 356 LVVPISKAQALQRSGRAGREG---PGKCFRLYP 385 (478)
Q Consensus 356 ~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~ 385 (478)
...|.|..+|.||+|||||.| .|.||.++.
T Consensus 458 ~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 458 GLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp EEEECCHHHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred cCCCCCHHHHhHHhcccccCCCCcceEEEEecC
Confidence 225889999999999999988 899999984
No 22
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.5e-37 Score=319.28 Aligned_cols=293 Identities=16% Similarity=0.260 Sum_probs=206.2
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEE
Q 011751 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRV 91 (478)
Q Consensus 12 ~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~v 91 (478)
.-.++++|.++++.+.+|+++++++|||||||.++...++.. ...++++.|+++++.++.+.+.+ .+ ..+
T Consensus 23 ~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----~g~~lvi~P~~aL~~q~~~~l~~-~g----i~~ 92 (523)
T 1oyw_A 23 YQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----NGLTVVVSPLISLMKDQVDQLQA-NG----VAA 92 (523)
T ss_dssp CSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----SSEEEEECSCHHHHHHHHHHHHH-TT----CCE
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-----CCCEEEECChHHHHHHHHHHHHH-cC----CcE
Confidence 335789999999999999999999999999996443333322 24689999999999999988765 23 223
Q ss_pred EEEEeecccCChhhhH---H---------------HHhhC-----cCcCCCcceEeecccccchhhhHH---HHHHHHHH
Q 011751 92 GYSIRFDDRTSTSTRI---K---------------EALLD-----PYLSRYSAIIVDEAHERTVHTDVL---LGLLKKVQ 145 (478)
Q Consensus 92 g~~~~~~~~~~~~~~~---~---------------~~l~~-----~~l~~~~~lIiDE~H~r~~~~~~~---l~~l~~~~ 145 (478)
.+. .+..+..... . .+... ....++++|||||||+...+...+ +..+..+.
T Consensus 93 ~~l---~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~ 169 (523)
T 1oyw_A 93 ACL---NSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLR 169 (523)
T ss_dssp EEE---CTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHH
T ss_pred EEE---eCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHH
Confidence 221 1111111110 0 11110 113678999999999644332111 11111111
Q ss_pred HhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChh---HHHhhhCC-CCeEEeCCc
Q 011751 146 NARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR---GFSEYFGC-AKAVHVQGR 221 (478)
Q Consensus 146 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~---~~~~~~~~-~~~~~~~~~ 221 (478)
... ++.+++++|||++.. ++.++++- .+.+...+.
T Consensus 170 ~~~-----------------------------------------~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~ 208 (523)
T 1oyw_A 170 QRF-----------------------------------------PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSF 208 (523)
T ss_dssp HHC-----------------------------------------TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCC
T ss_pred HhC-----------------------------------------CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCC
Confidence 111 568899999999553 56677763 334444333
Q ss_pred cccceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHH
Q 011751 222 QFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQ 301 (478)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~ 301 (478)
..+ ++.+...+..+.... +.......+++++||||+|+++++.+++.|.+. ++.+..+||+|+.++
T Consensus 209 ~r~-~l~~~v~~~~~~~~~----l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~---------g~~~~~~h~~l~~~~ 274 (523)
T 1oyw_A 209 DRP-NIRYMLMEKFKPLDQ----LMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSK---------GISAAAYHAGLENNV 274 (523)
T ss_dssp CCT-TEEEEEEECSSHHHH----HHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHH
T ss_pred CCC-ceEEEEEeCCCHHHH----HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHC---------CCCEEEecCCCCHHH
Confidence 222 333332223333333 333333345779999999999999999999886 788999999999999
Q ss_pred HHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeE
Q 011751 302 QMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKC 380 (478)
Q Consensus 302 r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~ 380 (478)
|..+++.|++|+.+|||||+++++|+|+|++++||+ || .|.|.++|.||+|||||.| +|.|
T Consensus 275 R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~--------~~----------~p~s~~~y~Qr~GRaGR~g~~~~~ 336 (523)
T 1oyw_A 275 RADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVH--------FD----------IPRNIESYYQETGRAGRDGLPAEA 336 (523)
T ss_dssp HHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEE--------SS----------CCSSHHHHHHHHTTSCTTSSCEEE
T ss_pred HHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEE--------EC----------CCCCHHHHHHHhccccCCCCCceE
Confidence 999999999999999999999999999999999999 55 5889999999999999999 9999
Q ss_pred EEecCHhhHh
Q 011751 381 FRLYPENEFD 390 (478)
Q Consensus 381 ~~l~~~~~~~ 390 (478)
+.+|++++..
T Consensus 337 ~l~~~~~d~~ 346 (523)
T 1oyw_A 337 MLFYDPADMA 346 (523)
T ss_dssp EEEECHHHHH
T ss_pred EEEeCHHHHH
Confidence 9999877654
No 23
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.3e-37 Score=325.15 Aligned_cols=323 Identities=13% Similarity=0.187 Sum_probs=214.8
Q ss_pred HHHhhhcCCcHHHHHHHHHHHh--cCCEEEEEcCCCCcHHhHHHHHHhhcCcc-----CCCcEEEEecchHHHHHHHHHH
Q 011751 6 ILQQRKSLPIASVEKRLVEEVR--KNDILIIVGETGSGKTTQLPQFLFHAGFC-----RDGKLIGVTQPRRVAAVTVAKR 78 (478)
Q Consensus 6 ~~~~~~~~~~~~~q~~~~~~l~--~~~~~~i~apTGsGKT~~~~~~~~~~~~~-----~~~~~i~~~~p~~~l~~~~~~~ 78 (478)
.+...+.-.++++|.++++.+. .+++++++||||||||.++..+++..... ..+..++++.|+++|+.|+.+.
T Consensus 35 ~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~ 114 (579)
T 3sqw_A 35 AITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAE 114 (579)
T ss_dssp HHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHH
T ss_pred HHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHH
Confidence 3444444568999999999999 78999999999999996655555433221 1245799999999999999998
Q ss_pred HHHHhC----CcCCCEEEEEEee---------------cccCChhhhHHHHhh---CcCcCCCcceEeecccccchh--h
Q 011751 79 VAEESG----VELGQRVGYSIRF---------------DDRTSTSTRIKEALL---DPYLSRYSAIIVDEAHERTVH--T 134 (478)
Q Consensus 79 ~~~~~~----~~~~~~vg~~~~~---------------~~~~~~~~~~~~~l~---~~~l~~~~~lIiDE~H~r~~~--~ 134 (478)
+.+... ........ .... +..+.+..++..++. ...+.++++||+||||+...+ .
T Consensus 115 ~~~~~~~~~~~~~~~~~~-~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~ 193 (579)
T 3sqw_A 115 VKKIHDMNYGLKKYACVS-LVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFR 193 (579)
T ss_dssp HHHHHHHCGGGTTSCEEE-ECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTH
T ss_pred HHHHHhhcccccceEEEE-EECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCH
Confidence 877542 11111111 1111 011122233333222 235788999999999953211 1
Q ss_pred hHHHHHHHHHHHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCCh--hHHHhhh-C
Q 011751 135 DVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RGFSEYF-G 211 (478)
Q Consensus 135 ~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~--~~~~~~~-~ 211 (478)
+.+..++..+...+ .....+.++++||||++. ..+..++ .
T Consensus 194 ~~~~~i~~~l~~~~-------------------------------------~~~~~~~~~l~~SAT~~~~v~~~~~~~l~ 236 (579)
T 3sqw_A 194 DDLETISGILNEKN-------------------------------------SKSADNIKTLLFSATLDDKVQKLANNIMN 236 (579)
T ss_dssp HHHHHHHHHHHHHC-------------------------------------SSCTTCCEEEEEESSCCTHHHHHTTTTCC
T ss_pred HHHHHHHHHhhhhh-------------------------------------cccccCceEEEEeccCChHHHHHHHHHcC
Confidence 11111111111111 111147899999999943 4455444 3
Q ss_pred CCCeEEeCCc-------cccceEEecCCCC-cchHHHHHHHHHHhhh-cCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCC
Q 011751 212 CAKAVHVQGR-------QFPVEILYTLYPE-PDYLDATLITIFQVHL-DEAPGDILVFLTGQEEIESVERLVQERLLQLP 282 (478)
Q Consensus 212 ~~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~ 282 (478)
....+.+... ...+...+..... .......+..+..... ..+++++||||+|+..++.++..|.+.+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~-- 314 (579)
T 3sqw_A 237 KKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK-- 314 (579)
T ss_dssp SSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTT--
T ss_pred CCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcC--
Confidence 3333333211 0111222211111 2222333333333332 255789999999999999999999887542
Q ss_pred CCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCH
Q 011751 283 EASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISK 362 (478)
Q Consensus 283 ~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~ 362 (478)
++.+..+||+|++++|..+++.|++|..+|||||+++++|+|+|++++||+ || .|.+.
T Consensus 315 ----~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~--------~~----------~p~s~ 372 (579)
T 3sqw_A 315 ----DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ--------IG----------VPSEL 372 (579)
T ss_dssp ----TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE--------ES----------CCSST
T ss_pred ----CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEE--------cC----------CCCCH
Confidence 677999999999999999999999999999999999999999999999999 76 58889
Q ss_pred HHHHHhhcccCCCC-CCeEEEecCHhhHh
Q 011751 363 AQALQRSGRAGREG-PGKCFRLYPENEFD 390 (478)
Q Consensus 363 ~~~~Qr~GRaGR~~-~G~~~~l~~~~~~~ 390 (478)
.+|+||+|||||.| .|.|+.++++.+..
T Consensus 373 ~~y~Qr~GRagR~g~~g~~i~~~~~~e~~ 401 (579)
T 3sqw_A 373 ANYIHRIGRTARSGKEGSSVLFICKDELP 401 (579)
T ss_dssp THHHHHHTTSSCTTCCEEEEEEEEGGGHH
T ss_pred HHhhhhccccccCCCCceEEEEEcccHHH
Confidence 99999999999999 89999999876543
No 24
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=1.9e-38 Score=327.32 Aligned_cols=301 Identities=19% Similarity=0.199 Sum_probs=216.2
Q ss_pred hHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhC
Q 011751 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (478)
Q Consensus 5 ~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (478)
+.+..+..+|++.+|+++...+.++++++++||||||||+++++++++. +.+++++.|+|+++.|+++++.+.++
T Consensus 208 e~l~~r~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~-----g~~vLVl~PTReLA~Qia~~l~~~~g 282 (666)
T 3o8b_A 208 ESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ-----GYKVLVLNPSVAATLGFGAYMSKAHG 282 (666)
T ss_dssp HHHHHHHHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT-----TCCEEEEESCHHHHHHHHHHHHHHHS
T ss_pred HhhhhhccCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC-----CCeEEEEcchHHHHHHHHHHHHHHhC
Confidence 4566778899999999999999999999999999999999999888864 44799999999999999999998888
Q ss_pred CcCCCEEEEEEee---cccCChhhhHHHHhhC--cCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccCCCCCC
Q 011751 85 VELGQRVGYSIRF---DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGN 159 (478)
Q Consensus 85 ~~~~~~vg~~~~~---~~~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 159 (478)
...+..+|+.... +....+..++ +.+ ..+.++++|||||||+++...+..+..+.+.....
T Consensus 283 ~~vg~~vG~~~~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~----------- 348 (666)
T 3o8b_A 283 IDPNIRTGVRTITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETA----------- 348 (666)
T ss_dssp CCCEEECSSCEECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTT-----------
T ss_pred CCeeEEECcEeccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhc-----------
Confidence 7665544432211 1112223333 333 34667999999999998887776666554433221
Q ss_pred CCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChhHHHhhhCCCCeEEeCCccccceEEecCCCCcchHH
Q 011751 160 NNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDYLD 239 (478)
Q Consensus 160 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (478)
....+++||||++.. +. ........+...... ...+.. ... .
T Consensus 349 ------------------------------~~~llil~SAT~~~~-i~--~~~p~i~~v~~~~~~-~i~~~~---~~~-~ 390 (666)
T 3o8b_A 349 ------------------------------GARLVVLATATPPGS-VT--VPHPNIEEVALSNTG-EIPFYG---KAI-P 390 (666)
T ss_dssp ------------------------------TCSEEEEEESSCTTC-CC--CCCTTEEEEECBSCS-SEEETT---EEE-C
T ss_pred ------------------------------CCceEEEECCCCCcc-cc--cCCcceEEEeecccc-hhHHHH---hhh-h
Confidence 233478889999542 10 011111111110000 011110 000 0
Q ss_pred HHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEe
Q 011751 240 ATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILA 319 (478)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlva 319 (478)
......+++||||+++++++.+++.|++. ++.+..+||++++++ |+++..+||||
T Consensus 391 ---------l~~~~~~~vLVFv~Tr~~ae~la~~L~~~---------g~~v~~lHG~l~q~e-------r~~~~~~VLVA 445 (666)
T 3o8b_A 391 ---------IEAIRGGRHLIFCHSKKKCDELAAKLSGL---------GINAVAYYRGLDVSV-------IPTIGDVVVVA 445 (666)
T ss_dssp ---------GGGSSSSEEEEECSCHHHHHHHHHHHHTT---------TCCEEEECTTSCGGG-------SCSSSCEEEEE
T ss_pred ---------hhhccCCcEEEEeCCHHHHHHHHHHHHhC---------CCcEEEecCCCCHHH-------HHhCCCcEEEE
Confidence 11235789999999999999999999875 788999999999875 34566699999
Q ss_pred ccccccccccCCeEEEEeCCccccee----ecCCCCcccceeeecCHHHHHHhhcccCCCCCCeEEEecCHhhHh
Q 011751 320 TNIAETSVTIPGIKYVIDPGFVKARL----YDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFD 390 (478)
Q Consensus 320 T~~~~~Gvdip~v~~VI~~g~~~~~~----yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~ 390 (478)
||++++|||+| +++|||+|+.+... |||..++.. ...|.|.++|+||+|||||..+|. |.|+++++..
T Consensus 446 TdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~-~~~P~s~~syiQRiGRtGRg~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 446 TDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIET-TTVPQDAVSRSQRRGRTGRGRRGI-YRFVTPGERP 517 (666)
T ss_dssp CTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEE-EEEECBHHHHHHHHTTBCSSSCEE-EEESCCCCBC
T ss_pred CChHHccCCCC-CcEEEecCccccccccccccccccccc-ccCcCCHHHHHHHhccCCCCCCCE-EEEEecchhh
Confidence 99999999997 99999999888664 566666654 467999999999999999944999 9999876543
No 25
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.1e-38 Score=317.95 Aligned_cols=315 Identities=15% Similarity=0.256 Sum_probs=106.5
Q ss_pred hHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccC-CCcEEEEecchHHHHHHHHHHHHHHh
Q 011751 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPRRVAAVTVAKRVAEES 83 (478)
Q Consensus 5 ~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~-~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (478)
+.+...+...++++|+++++.+.+++++++++|||||||.++..+++...... .+.+++++.|+++++.|+.+.+.+..
T Consensus 34 ~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 113 (394)
T 1fuu_A 34 RGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALA 113 (394)
T ss_dssp HHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 33444555678999999999999999999999999999977666665543322 35679999999999999999887665
Q ss_pred CCcCCCEEEEEEeecc-------------cCChhhhHHHHhh--CcCcCCCcceEeecccccchhhhHHHHHHHHHHHhh
Q 011751 84 GVELGQRVGYSIRFDD-------------RTSTSTRIKEALL--DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (478)
Q Consensus 84 ~~~~~~~vg~~~~~~~-------------~~~~~~~~~~~l~--~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~ 148 (478)
.. .+..++....... ...+...+...+. ...+.+++++|+||||...... ....+..+
T Consensus 114 ~~-~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~--~~~~~~~~---- 186 (394)
T 1fuu_A 114 FH-MDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSG--FKEQIYQI---- 186 (394)
T ss_dssp TT-SCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTT--CHHHHHHH----
T ss_pred cc-CCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCC--cHHHHHHH----
Confidence 42 2333332221111 1122222223332 2346789999999999421110 01111111
Q ss_pred cccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChh---HHHhhhCCCCeEEeCCcccc-
Q 011751 149 SKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR---GFSEYFGCAKAVHVQGRQFP- 224 (478)
Q Consensus 149 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~---~~~~~~~~~~~~~~~~~~~~- 224 (478)
+..+. ++.++++||||++.. ....++..+..+........
T Consensus 187 --------------------------------~~~~~----~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (394)
T 1fuu_A 187 --------------------------------FTLLP----PTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTL 230 (394)
T ss_dssp --------------------------------HHHSC----TTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----
T ss_pred --------------------------------HHhCC----CCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccC
Confidence 11111 567999999999543 34456665544444332221
Q ss_pred --ceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHH
Q 011751 225 --VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQ 302 (478)
Q Consensus 225 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r 302 (478)
+...+......++. ...+..+....+.+++||||+++++++.+++.|.+. ++.+..+||+++.++|
T Consensus 231 ~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r 298 (394)
T 1fuu_A 231 EGIKQFYVNVEEEEYK---YECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND---------KFTVSAIYSDLPQQER 298 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEEEcCchhhH---HHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHc---------CCeEEEeeCCCCHHHH
Confidence 12222222222211 122223333345679999999999999999999876 7789999999999999
Q ss_pred HhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEE
Q 011751 303 MRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCF 381 (478)
Q Consensus 303 ~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~ 381 (478)
..+++.|++|..+|||||+++++|+|+|++++||+ || .|.+..+|.||+||+||.| +|.|+
T Consensus 299 ~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~--------~~----------~p~s~~~~~Qr~GR~~R~g~~g~~~ 360 (394)
T 1fuu_A 299 DTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN--------YD----------LPANKENYIHRIGRGGRFGRKGVAI 360 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEE--------eC----------CCCCHHHHHHHcCcccCCCCCceEE
Confidence 99999999999999999999999999999999999 65 4788999999999999998 89999
Q ss_pred EecCHhhHhcc
Q 011751 382 RLYPENEFDKL 392 (478)
Q Consensus 382 ~l~~~~~~~~~ 392 (478)
.++++++...+
T Consensus 361 ~~~~~~~~~~~ 371 (394)
T 1fuu_A 361 NFVTNEDVGAM 371 (394)
T ss_dssp -----------
T ss_pred EEEchhHHHHH
Confidence 99988866543
No 26
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.9e-37 Score=313.85 Aligned_cols=288 Identities=18% Similarity=0.179 Sum_probs=197.0
Q ss_pred HHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeec
Q 011751 19 EKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFD 98 (478)
Q Consensus 19 q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~ 98 (478)
+......+.++++++++||||||||+++.+.++..... .+.+++++.|+++++.|+.+++. + ..+++.....
T Consensus 11 ~~~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-~~~~~lvl~Ptr~La~Q~~~~l~---g----~~v~~~~~~~ 82 (459)
T 2z83_A 11 GRGSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-QRLRTAVLAPTRVVAAEMAEALR---G----LPVRYQTSAV 82 (459)
T ss_dssp ----CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-TTCCEEEEECSHHHHHHHHHHTT---T----SCEEECC---
T ss_pred HHHHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEECchHHHHHHHHHHhc---C----ceEeEEeccc
Confidence 33345567889999999999999998765555543322 35679999999999999998774 2 2222211110
Q ss_pred c-------c---CChhhhHHHHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccCCCCCCCCCCCchhh
Q 011751 99 D-------R---TSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMI 168 (478)
Q Consensus 99 ~-------~---~~~~~~~~~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~ 168 (478)
. . .........++....+.++++||+||||+++......++++......
T Consensus 83 ~~~~t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~~--------------------- 141 (459)
T 2z83_A 83 QREHQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVEL--------------------- 141 (459)
T ss_dssp -----CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHHT---------------------
T ss_pred ccCCCCCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhcc---------------------
Confidence 0 0 01112233555567789999999999999888888888777654432
Q ss_pred hccCCCCCCccccccccCCCCCCceEEEEcCCCChhHHHhhh-CCCCeEEeCCccccceEEecCCCCcchHHHHHHHHHH
Q 011751 169 LDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYF-GCAKAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQ 247 (478)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (478)
++.++++||||++.+. ..+. ...++..+.. ..+...+.. ....+
T Consensus 142 ---------------------~~~~~il~SAT~~~~~-~~~~~~~~pi~~~~~----------~~~~~~~~~-~~~~l-- 186 (459)
T 2z83_A 142 ---------------------GEAAAIFMTATPPGTT-DPFPDSNAPIHDLQD----------EIPDRAWSS-GYEWI-- 186 (459)
T ss_dssp ---------------------TSCEEEEECSSCTTCC-CSSCCCSSCEEEEEC----------CCCSSCCSS-CCHHH--
T ss_pred ---------------------CCccEEEEEcCCCcch-hhhccCCCCeEEecc----------cCCcchhHH-HHHHH--
Confidence 5679999999995432 1111 1233332211 111111100 00111
Q ss_pred hhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEecccccccc
Q 011751 248 VHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSV 327 (478)
Q Consensus 248 ~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gv 327 (478)
. ..++++||||+++++++.+++.|++. ++.+..+||. +|..+++.|++|+.+|||||+++++|+
T Consensus 187 --~-~~~~~~LVF~~s~~~~~~l~~~L~~~---------g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~Gi 250 (459)
T 2z83_A 187 --T-EYAGKTVWFVASVKMGNEIAMCLQRA---------GKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGA 250 (459)
T ss_dssp --H-HCCSCEEEECSCHHHHHHHHHHHHHT---------TCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---C
T ss_pred --H-hcCCCEEEEeCChHHHHHHHHHHHhc---------CCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCe
Confidence 1 12789999999999999999999886 7889999984 788999999999999999999999999
Q ss_pred ccCCeEEEEeCCcccceeec--CCCCcccceeeecCHHHHHHhhcccCCCC--CCeEEEecCHh
Q 011751 328 TIPGIKYVIDPGFVKARLYD--PVKGMESLLVVPISKAQALQRSGRAGREG--PGKCFRLYPEN 387 (478)
Q Consensus 328 dip~v~~VI~~g~~~~~~yd--~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~--~G~~~~l~~~~ 387 (478)
|+|+ ++|||+|....+.|+ .......+...|.|.++|+||+|||||.| +|.||.+++..
T Consensus 251 Dip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 251 NFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 9999 999999987777654 22222222338999999999999999998 89999999764
No 27
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=9e-37 Score=297.58 Aligned_cols=297 Identities=18% Similarity=0.232 Sum_probs=209.0
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHh
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (478)
.+.++..+...++++|+++++.+.+++++++++|||||||.++..+++.. +..++++.|+++++.|+.+.+.+..
T Consensus 6 ~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-----~~~~liv~P~~~L~~q~~~~~~~~~ 80 (337)
T 2z0m_A 6 EQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-----GMKSLVVTPTRELTRQVASHIRDIG 80 (337)
T ss_dssp HHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----TCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-----cCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 44555666677999999999999999999999999999997776666654 4568999999999999999887654
Q ss_pred CCcCCCEEEEEEeec-------------ccCChhhhHHHHhhC--cCcCCCcceEeecccccchhhhHHHHHHHHHHHhh
Q 011751 84 GVELGQRVGYSIRFD-------------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (478)
Q Consensus 84 ~~~~~~~vg~~~~~~-------------~~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~ 148 (478)
. ..+..++...... ....+...+...+.. ..+.+++++|+||||....+. ....++.+..
T Consensus 81 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~--~~~~~~~~~~-- 155 (337)
T 2z0m_A 81 R-YMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMG--FIDDIKIILA-- 155 (337)
T ss_dssp T-TSCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTT--CHHHHHHHHH--
T ss_pred h-hcCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccc--cHHHHHHHHh--
Confidence 3 2233333222111 011222333333332 246789999999999422111 0111111111
Q ss_pred cccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChh---HHHhhhCCCCeEEeCCccccc
Q 011751 149 SKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR---GFSEYFGCAKAVHVQGRQFPV 225 (478)
Q Consensus 149 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~---~~~~~~~~~~~~~~~~~~~~~ 225 (478)
... ...++++||||++.. .+..|+.+...+........+
T Consensus 156 ----------------------------------~~~----~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (337)
T 2z0m_A 156 ----------------------------------QTS----NRKITGLFSATIPEEIRKVVKDFITNYEEIEACIGLANV 197 (337)
T ss_dssp ----------------------------------HCT----TCSEEEEEESCCCHHHHHHHHHHSCSCEEEECSGGGGGE
T ss_pred ----------------------------------hCC----cccEEEEEeCcCCHHHHHHHHHhcCCceeeecccccCCc
Confidence 111 456889999999544 455677665444333222333
Q ss_pred eEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhh
Q 011751 226 EILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRV 305 (478)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i 305 (478)
...+....... .. . ........++++||||+++++++.+++.|. .+..+||+++.++|.++
T Consensus 198 ~~~~~~~~~~~-~~-~----~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~-------------~~~~~~~~~~~~~r~~~ 258 (337)
T 2z0m_A 198 EHKFVHVKDDW-RS-K----VQALRENKDKGVIVFVRTRNRVAKLVRLFD-------------NAIELRGDLPQSVRNRN 258 (337)
T ss_dssp EEEEEECSSSS-HH-H----HHHHHTCCCSSEEEECSCHHHHHHHHTTCT-------------TEEEECTTSCHHHHHHH
T ss_pred eEEEEEeChHH-HH-H----HHHHHhCCCCcEEEEEcCHHHHHHHHHHhh-------------hhhhhcCCCCHHHHHHH
Confidence 33333332221 11 1 122334567899999999999999887764 26778999999999999
Q ss_pred cCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEEec
Q 011751 306 FAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLY 384 (478)
Q Consensus 306 ~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~ 384 (478)
++.|++|+.+|||||+++++|+|+|++++||+ || .|.|..+|.||+|||||.| +|.|+.++
T Consensus 259 ~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~--------~~----------~~~s~~~~~Q~~GR~gR~g~~g~~~~~~ 320 (337)
T 2z0m_A 259 IDAFREGEYDMLITTDVASRGLDIPLVEKVIN--------FD----------APQDLRTYIHRIGRTGRMGRKGEAITFI 320 (337)
T ss_dssp HHHHHTTSCSEEEECHHHHTTCCCCCBSEEEE--------SS----------CCSSHHHHHHHHTTBCGGGCCEEEEEEE
T ss_pred HHHHHcCCCcEEEEcCccccCCCccCCCEEEE--------ec----------CCCCHHHhhHhcCccccCCCCceEEEEE
Confidence 99999999999999999999999999999999 65 4789999999999999998 89999998
Q ss_pred C
Q 011751 385 P 385 (478)
Q Consensus 385 ~ 385 (478)
.
T Consensus 321 ~ 321 (337)
T 2z0m_A 321 L 321 (337)
T ss_dssp S
T ss_pred e
Confidence 7
No 28
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.4e-37 Score=314.43 Aligned_cols=288 Identities=16% Similarity=0.194 Sum_probs=202.3
Q ss_pred HHHHHHHHHHHhcCCEE-EEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEE
Q 011751 16 ASVEKRLVEEVRKNDIL-IIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYS 94 (478)
Q Consensus 16 ~~~q~~~~~~l~~~~~~-~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~ 94 (478)
.++|+ +++.+.+++++ +++||||||||+++...++..... .+.+++++.|+++++.|+.+.+. +..+++.
T Consensus 6 ~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-~~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~ 76 (451)
T 2jlq_A 6 EPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-RRLRTLILAPTRVVAAEMEEALR-------GLPIRYQ 76 (451)
T ss_dssp SCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTT-------TSCEEEC
T ss_pred CCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-cCCcEEEECCCHHHHHHHHHHhc-------Cceeeee
Confidence 34454 56777766655 999999999997543343322222 34679999999999999988763 2233332
Q ss_pred Eeecc-c---------CChhhhHHHHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccCCCCCCCCCCC
Q 011751 95 IRFDD-R---------TSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNEN 164 (478)
Q Consensus 95 ~~~~~-~---------~~~~~~~~~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~ 164 (478)
..... . .+.......+.....+.++++||+||||+.+...+..+.++..... .
T Consensus 77 ~~~~~~~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~-~---------------- 139 (451)
T 2jlq_A 77 TPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVE-M---------------- 139 (451)
T ss_dssp CTTCSCCCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHHHHHHHHH-T----------------
T ss_pred eccccccCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHHHHHHhhc-C----------------
Confidence 22110 0 0111223345556778999999999999886666666655543221 1
Q ss_pred chhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChhHHHhhhCCCCeEEeCCccccceEEecCCCCcchHHHHHHH
Q 011751 165 SDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDYLDATLIT 244 (478)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (478)
++.++++||||++.+....+.++.+.+... ...|... +.. . ...
T Consensus 140 -------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~-~~~p~~~-~~~-----~----~~~ 183 (451)
T 2jlq_A 140 -------------------------GEAAAIFMTATPPGSTDPFPQSNSPIEDIE-REIPERS-WNT-----G----FDW 183 (451)
T ss_dssp -------------------------TSCEEEEECSSCTTCCCSSCCCSSCEEEEE-CCCCSSC-CSS-----S----CHH
T ss_pred -------------------------CCceEEEEccCCCccchhhhcCCCceEecC-ccCCchh-hHH-----H----HHH
Confidence 568999999999665544455555444433 2222111 100 0 011
Q ss_pred HHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccc
Q 011751 245 IFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAE 324 (478)
Q Consensus 245 ~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~ 324 (478)
.. ...+++||||+++++++.+++.|.+. ++.+..+||.+ +.++++.|++|+.+|||||++++
T Consensus 184 ----l~-~~~~~~lVF~~s~~~a~~l~~~L~~~---------g~~~~~lh~~~----~~~~~~~f~~g~~~vLVaT~v~~ 245 (451)
T 2jlq_A 184 ----IT-DYQGKTVWFVPSIKAGNDIANCLRKS---------GKRVIQLSRKT----FDTEYPKTKLTDWDFVVTTDISE 245 (451)
T ss_dssp ----HH-HCCSCEEEECSSHHHHHHHHHHHHTT---------TCCEEEECTTT----HHHHGGGGGSSCCSEEEECGGGG
T ss_pred ----HH-hCCCCEEEEcCCHHHHHHHHHHHHHc---------CCeEEECCHHH----HHHHHHhhccCCceEEEECCHHH
Confidence 11 13679999999999999999999875 77888999975 45789999999999999999999
Q ss_pred cccccCCeEEEEeCCcccceeecCCCCccccee---eecCHHHHHHhhcccCCCC--CCeEEEecC
Q 011751 325 TSVTIPGIKYVIDPGFVKARLYDPVKGMESLLV---VPISKAQALQRSGRAGREG--PGKCFRLYP 385 (478)
Q Consensus 325 ~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~---~~~s~~~~~Qr~GRaGR~~--~G~~~~l~~ 385 (478)
+|+|+|+ ++|||+|+.+...|| ..+...+.. .|.|.++|+||+|||||.| +|.|+.++.
T Consensus 246 ~GiDip~-~~VI~~~~~~~~~~d-~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~ 309 (451)
T 2jlq_A 246 MGANFRA-GRVIDPRRCLKPVIL-TDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 309 (451)
T ss_dssp SSCCCCC-SEEEECCEEEEEEEE-CSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred hCcCCCC-CEEEECCCccccccc-ccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeC
Confidence 9999999 999999999888887 445555544 8999999999999999999 789988874
No 29
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=2.4e-37 Score=321.96 Aligned_cols=292 Identities=17% Similarity=0.204 Sum_probs=205.6
Q ss_pred hhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCC
Q 011751 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ 89 (478)
Q Consensus 10 ~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~ 89 (478)
+..+|+... .++.+.+|++++++||||||||+++...++..... .+.+++++.|+++++.|+.+.+. +.
T Consensus 170 ~~~lpiq~~---~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-~~~~vLvl~PtreLa~Qi~~~l~-------~~ 238 (618)
T 2whx_A 170 RIGEPDYEV---DEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-RRLRTLILAPTRVVAAEMEEALR-------GL 238 (618)
T ss_dssp CCCCCCCCC---CGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTT-------TS
T ss_pred ccCCCcccc---CHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEcChHHHHHHHHHHhc-------CC
Confidence 344555432 48889999999999999999997754444433222 35578999999999999988764 23
Q ss_pred EEEEEEeecc-cCCh---------hhhHHHHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccCCCCCC
Q 011751 90 RVGYSIRFDD-RTST---------STRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGN 159 (478)
Q Consensus 90 ~vg~~~~~~~-~~~~---------~~~~~~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 159 (478)
.+++...... ..+. ......++.+..+.++++||+||||+.+...+..+..+......
T Consensus 239 ~v~~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l~~------------ 306 (618)
T 2whx_A 239 PIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEM------------ 306 (618)
T ss_dssp CEEECCTTSSCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHH------------
T ss_pred ceeEecccceeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCccHHHHHHHHHHHhcc------------
Confidence 3444322110 1111 11222455566789999999999999877666666666554421
Q ss_pred CCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChhHHHhhhC-CCCeEEeCCccccceEEecCCCCcchH
Q 011751 160 NNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFG-CAKAVHVQGRQFPVEILYTLYPEPDYL 238 (478)
Q Consensus 160 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (478)
++.|+++||||++.. ...+.. +.+.+.+... + +...+
T Consensus 307 ------------------------------~~~q~il~SAT~~~~-~~~~~~~~~~~~~v~~~-~---------~~~~~- 344 (618)
T 2whx_A 307 ------------------------------GEAAAIFMTATPPGS-TDPFPQSNSPIEDIERE-I---------PERSW- 344 (618)
T ss_dssp ------------------------------TSCEEEEECSSCTTC-CCSSCCCSSCEEEEECC-C---------CSSCC-
T ss_pred ------------------------------cCccEEEEECCCchh-hhhhhccCCceeeeccc-C---------CHHHH-
Confidence 567999999999433 223333 2223333221 1 11111
Q ss_pred HHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEE
Q 011751 239 DATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVIL 318 (478)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlv 318 (478)
...+..+ .. ..+++||||+|+++++.+++.|.+. ++.+..+||. +|.++++.|++|+.+|||
T Consensus 345 ~~ll~~l----~~-~~~~~LVF~~s~~~a~~l~~~L~~~---------g~~v~~lhg~----~R~~~l~~F~~g~~~VLV 406 (618)
T 2whx_A 345 NTGFDWI----TD-YQGKTVWFVPSIKAGNDIANCLRKS---------GKRVIQLSRK----TFDTEYPKTKLTDWDFVV 406 (618)
T ss_dssp SSSCHHH----HH-CCSCEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTT----THHHHTTHHHHSCCSEEE
T ss_pred HHHHHHH----Hh-CCCCEEEEECChhHHHHHHHHHHHc---------CCcEEEEChH----HHHHHHHhhcCCCcEEEE
Confidence 0011111 11 3779999999999999999999886 7789999984 788899999999999999
Q ss_pred eccccccccccCCeEEEEeCCcccceee--cCCCCcccceeeecCHHHHHHhhcccCCCC--CCeEEEecC
Q 011751 319 ATNIAETSVTIPGIKYVIDPGFVKARLY--DPVKGMESLLVVPISKAQALQRSGRAGREG--PGKCFRLYP 385 (478)
Q Consensus 319 aT~~~~~Gvdip~v~~VI~~g~~~~~~y--d~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~--~G~~~~l~~ 385 (478)
|||++++|+|+| +++|||+|+...+.+ |...++......|.|.++|+||+|||||.| +|.||.+++
T Consensus 407 aTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~ 476 (618)
T 2whx_A 407 TTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 476 (618)
T ss_dssp ECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred ECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEcc
Confidence 999999999997 999999998776654 333334445568999999999999999996 899999996
No 30
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-37 Score=318.17 Aligned_cols=311 Identities=15% Similarity=0.196 Sum_probs=192.5
Q ss_pred cCCcHHHHHHHHHHHhcC--CEEEEEcCCCCcHHhHHHHHHhhcCccCC-CcEEEEecchHHHHHHHHHHHHHHhCCcCC
Q 011751 12 SLPIASVEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLFHAGFCRD-GKLIGVTQPRRVAAVTVAKRVAEESGVELG 88 (478)
Q Consensus 12 ~~~~~~~q~~~~~~l~~~--~~~~i~apTGsGKT~~~~~~~~~~~~~~~-~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~ 88 (478)
...++++|.++++.+.++ +++++++|||||||.++..++........ +.+++++.|+++++.|+.+++.+.......
T Consensus 139 ~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~ 218 (508)
T 3fho_A 139 XXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEV 218 (508)
T ss_dssp CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSC
T ss_pred ccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCe
Confidence 335788999999999998 99999999999999877777666544332 557999999999999999998876543211
Q ss_pred C-EEEEEEe--------ecccCChhhhHHHHhhC--cCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccCCCC
Q 011751 89 Q-RVGYSIR--------FDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSN 157 (478)
Q Consensus 89 ~-~vg~~~~--------~~~~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~~~~ 157 (478)
. ..++... .+....+...+...+.. ..+.++++||+||||....... ....+..+...
T Consensus 219 ~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~-~~~~~~~i~~~---------- 287 (508)
T 3fho_A 219 KTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQG-LGDQSMRIKHL---------- 287 (508)
T ss_dssp CEEC----------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC---CHHHHHHHHHH----------
T ss_pred eEEEEeCCcccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCC-cHHHHHHHHHh----------
Confidence 1 1111110 01112333444333332 2478899999999995332111 11111111111
Q ss_pred CCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCC--hhHHHhhhC-CCCeEEeCCcccc---ceEEecC
Q 011751 158 GNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLD--ARGFSEYFG-CAKAVHVQGRQFP---VEILYTL 231 (478)
Q Consensus 158 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~--~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~ 231 (478)
+ ..+.++++||||++ .+.+..++. ....+.+...... +...+..
T Consensus 288 --------------------------~----~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 337 (508)
T 3fho_A 288 --------------------------L----PRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMD 337 (508)
T ss_dssp --------------------------S----CTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEE
T ss_pred --------------------------C----CcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEE
Confidence 1 15679999999994 455555544 3333333322221 1222222
Q ss_pred CCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCC
Q 011751 232 YPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAA 311 (478)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~ 311 (478)
.... ......+..+....+.+++||||+++++++.++..|.+. +..+..+||+++..+|..+++.|++
T Consensus 338 ~~~~---~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~---------~~~v~~~hg~~~~~~R~~il~~f~~ 405 (508)
T 3fho_A 338 CQSE---EHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTAD---------GHTVACLTGNLEGAQRDAIMDSFRV 405 (508)
T ss_dssp C--C---HHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTT---------TCCCCEEC-----CTTGGGTHHHHS
T ss_pred CCch---HHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhC---------CCcEEEEeCCCCHHHHHHHHHHHHC
Confidence 2222 222333444445556789999999999999999999764 7788899999999999999999999
Q ss_pred CccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEEecCHh
Q 011751 312 GFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPEN 387 (478)
Q Consensus 312 g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~ 387 (478)
|..+|||||+++++|+|+|++++||+ ||..... ....|..+|+||+|||||.| .|.|+.+++..
T Consensus 406 g~~~VLVaT~~l~~GiDip~v~~VI~--------~~~p~~~----~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~ 470 (508)
T 3fho_A 406 GTSKVLVTTNVIARGIDVSQVNLVVN--------YDMPLDQ----AGRPDPQTYLHRIGRTGRFGRVGVSINFVHDK 470 (508)
T ss_dssp SSCCCCEECC-----CCCTTCCEEEC------------CC---------CTHHHHHTTSCCC-----CEEEEEECTT
T ss_pred CCCeEEEeCChhhcCCCccCCCEEEE--------ECCCCcc----cCCCCHHHHHHHhhhcCCCCCCcEEEEEEeCh
Confidence 99999999999999999999999998 5521110 01267899999999999999 89999999743
No 31
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.7e-36 Score=304.39 Aligned_cols=309 Identities=16% Similarity=0.151 Sum_probs=202.7
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHh
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (478)
.+.++....+.++++|.++++.+.+|++++++||||||||.++..++.... ..+..++++.|+++++.|+.+++.+..
T Consensus 11 ~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~--~~~~~~lil~Pt~~L~~q~~~~~~~~~ 88 (414)
T 3oiy_A 11 RSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQKLA 88 (414)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh--cCCCEEEEEECCHHHHHHHHHHHHHHc
Confidence 455666677889999999999999999999999999999964433333322 235679999999999999999988754
Q ss_pred CCcCCCEEEEEEeecc------------------cCChhhhHHHHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHH
Q 011751 84 GVELGQRVGYSIRFDD------------------RTSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQ 145 (478)
Q Consensus 84 ~~~~~~~vg~~~~~~~------------------~~~~~~~~~~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~ 145 (478)
. .+..++...+... .+.+..++...+....+.+++++|+||||....+..
T Consensus 89 ~--~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~---------- 156 (414)
T 3oiy_A 89 D--EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASR---------- 156 (414)
T ss_dssp C--SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHH----------
T ss_pred c--CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccc----------
Confidence 4 4444443221111 112222222223334467899999999994221110
Q ss_pred HhhcccccCCCCCCCCCCCchhhhc-cCCCCC-Ccccccccc-----CCC--CCCceEEEEcCCCChh----H-HHhhhC
Q 011751 146 NARSKSADGHSNGNNNNENSDMILD-RGNDTN-GINTLKQCQ-----GRK--FAPLKLIIMSASLDAR----G-FSEYFG 211 (478)
Q Consensus 146 ~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~-~~~~~~~~~-----~~~--~~~~~~i~lSAT~~~~----~-~~~~~~ 211 (478)
..|.+++ .++... +..++..++ ... ..+.+++++|||+.++ . +..+++
T Consensus 157 ------------------~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~ 218 (414)
T 3oiy_A 157 ------------------NIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN 218 (414)
T ss_dssp ------------------HHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS
T ss_pred ------------------hhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc
Confidence 0022333 333222 222222221 011 1567999999995222 2 223333
Q ss_pred CCCeEEeCCccccceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEE
Q 011751 212 CAKAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTV 291 (478)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~ 291 (478)
-. ..........+...+..... .......+.. .++++||||++++.++.++..|.+. ++.+.
T Consensus 219 ~~-~~~~~~~~~~i~~~~~~~~~---~~~l~~~l~~-----~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~ 280 (414)
T 3oiy_A 219 FT-VGRLVSVARNITHVRISSRS---KEKLVELLEI-----FRDGILIFAQTEEEGKELYEYLKRF---------KFNVG 280 (414)
T ss_dssp CC-SSCCCCCCCSEEEEEESSCC---HHHHHHHHHH-----HCSSEEEEESSHHHHHHHHHHHHHT---------TCCEE
T ss_pred cC-cCccccccccchheeeccCH---HHHHHHHHHH-----cCCCEEEEECCHHHHHHHHHHHHHc---------CCcee
Confidence 11 11111112233333433322 2222222222 2588999999999999999999886 77887
Q ss_pred -EccCCCCHHHHHhhcCcCCCCccEEEEe----ccccccccccCC-eEEEEeCCcccceeecCCCCcccceeee--cCHH
Q 011751 292 -PIFSSLPSEQQMRVFAPAAAGFRKVILA----TNIAETSVTIPG-IKYVIDPGFVKARLYDPVKGMESLLVVP--ISKA 363 (478)
Q Consensus 292 -~~h~~l~~~~r~~i~~~f~~g~~~vlva----T~~~~~Gvdip~-v~~VI~~g~~~~~~yd~~~~~~~~~~~~--~s~~ 363 (478)
.+||. +|+ ++.|++|+.+|||| |+++++|+|+|+ +++||+ || .| .+..
T Consensus 281 ~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~--------~~----------~p~~~~~~ 336 (414)
T 3oiy_A 281 ETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIF--------WG----------TPSGPDVY 336 (414)
T ss_dssp ESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEE--------ES----------CCTTTCHH
T ss_pred hhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEE--------EC----------CCCCCCHH
Confidence 88984 444 99999999999999 999999999999 999999 76 47 7999
Q ss_pred HHHHhhcccCCCC-----CCeEEEecCH
Q 011751 364 QALQRSGRAGREG-----PGKCFRLYPE 386 (478)
Q Consensus 364 ~~~Qr~GRaGR~~-----~G~~~~l~~~ 386 (478)
+|+||+|||||.| .|.|+.++..
T Consensus 337 ~y~qr~GR~gR~g~~~~~~g~~i~~~~~ 364 (414)
T 3oiy_A 337 TYIQASGRSSRILNGVLVKGVSVIFEED 364 (414)
T ss_dssp HHHHHHGGGCCEETTEECCEEEEEECCC
T ss_pred HHHHHhCccccCCCCCCcceEEEEEEcc
Confidence 9999999999986 6899999943
No 32
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=3.1e-37 Score=322.04 Aligned_cols=310 Identities=19% Similarity=0.183 Sum_probs=210.1
Q ss_pred HhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccC-Chh
Q 011751 26 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRT-STS 104 (478)
Q Consensus 26 l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~-~~~ 104 (478)
..++++++++||||||||+.+...+.... ..+++.|+++++.|+++++.+. +. .++...+..... .+.
T Consensus 152 ~l~rk~vlv~apTGSGKT~~al~~l~~~~------~gl~l~PtR~LA~Qi~~~l~~~-g~----~v~lltG~~~~iv~Tp 220 (677)
T 3rc3_A 152 AMQRKIIFHSGPTNSGKTYHAIQKYFSAK------SGVYCGPLKLLAHEIFEKSNAA-GV----PCDLVTGEERVTVQPN 220 (677)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHSS------SEEEEESSHHHHHHHHHHHHHT-TC----CEEEECSSCEECCSTT
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcC------CeEEEeCHHHHHHHHHHHHHhc-CC----cEEEEECCeeEEecCC
Confidence 35789999999999999986666665541 2478899999999999998653 33 344332222111 111
Q ss_pred hhHHHHh-----hCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccCCCCCCCCCCCchhhhccCCCCCCcc
Q 011751 105 TRIKEAL-----LDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGIN 179 (478)
Q Consensus 105 ~~~~~~l-----~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 179 (478)
.+...++ .......++++||||+|+ +++.+++..+..
T Consensus 221 Gr~~~il~~T~e~~~l~~~v~lvVIDEaH~--------------------------------------l~d~~~g~~~~~ 262 (677)
T 3rc3_A 221 GKQASHVSCTVEMCSVTTPYEVAVIDEIQM--------------------------------------IRDPARGWAWTR 262 (677)
T ss_dssp CCCCSEEEEEGGGCCSSSCEEEEEECSGGG--------------------------------------GGCTTTHHHHHH
T ss_pred CcccceeEecHhHhhhcccCCEEEEeccee--------------------------------------cCCccchHHHHH
Confidence 1111111 112456789999999994 344444444444
Q ss_pred ccccccCCCCCCceEEEEcCCC-ChhHHHhhhCCCCeEEeCCccccceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEE
Q 011751 180 TLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDIL 258 (478)
Q Consensus 180 ~~~~~~~~~~~~~~~i~lSAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 258 (478)
++..+.. .+.+++++|||. ..+.+..+.+....+....+..+. .+....-.. .... ..+.+
T Consensus 263 ~l~~l~~---~~i~il~~SAT~~~i~~l~~~~~~~~~v~~~~r~~~l--~~~~~~l~~------------l~~~-~~g~i 324 (677)
T 3rc3_A 263 ALLGLCA---EEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPI--SVLDHALES------------LDNL-RPGDC 324 (677)
T ss_dssp HHHHCCE---EEEEEEECGGGHHHHHHHHHHHTCCEEEEECCCSSCE--EECSSCCCS------------GGGC-CTTEE
T ss_pred HHHccCc---cceEEEeccchHHHHHHHHHhcCCceEEEEeeecchH--HHHHHHHHH------------HHhc-CCCCE
Confidence 4433331 467899999997 455555555543233222222222 221111100 1111 33458
Q ss_pred EEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCC--CccEEEEeccccccccccCCeEEEE
Q 011751 259 VFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAA--GFRKVILATNIAETSVTIPGIKYVI 336 (478)
Q Consensus 259 VF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~--g~~~vlvaT~~~~~Gvdip~v~~VI 336 (478)
|||+++++++.+++.|.+. ++.+..+||+|++++|..+++.|++ |.++|||||+++++|+|+ ++++||
T Consensus 325 If~~s~~~ie~la~~L~~~---------g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI 394 (677)
T 3rc3_A 325 IVCFSKNDIYSVSRQIEIR---------GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRII 394 (677)
T ss_dssp EECSSHHHHHHHHHHHHHT---------TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEE
T ss_pred EEEcCHHHHHHHHHHHHhc---------CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEE
Confidence 8899999999999999885 7889999999999999999999998 899999999999999999 899999
Q ss_pred eCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC----CCeEEEecCHh--hHhcccCCCCCcccccCchHHHH
Q 011751 337 DPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG----PGKCFRLYPEN--EFDKLEDSTKPEIKRCNLSNVIL 410 (478)
Q Consensus 337 ~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~----~G~~~~l~~~~--~~~~~~~~~~pei~~~~l~~~~l 410 (478)
++|+.+. .||+..+.. ..|.|.++|.||+|||||.| +|.|+.+++++ .+..+.....|++.+.++....+
T Consensus 395 ~~~~~k~-~~~~~G~~~---~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d~~~~~~~~~~~~~~i~~~~l~p~~~ 470 (677)
T 3rc3_A 395 FYSLIKP-SINEKGERE---LEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAE 470 (677)
T ss_dssp ESCSBC---------------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTHHHHHHHHHHSCCCCCCCEEECCCHH
T ss_pred ECCcccc-ccccCCccc---cccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecchHHHHHHHHhcCcchhhhccCCChHH
Confidence 9999887 677764332 35999999999999999999 48999999877 66667788888888877766666
Q ss_pred HHHHcC
Q 011751 411 QLKALG 416 (478)
Q Consensus 411 ~~~~~~ 416 (478)
+++.++
T Consensus 471 ~l~~~~ 476 (677)
T 3rc3_A 471 QIEMFA 476 (677)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666654
No 33
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=2.4e-36 Score=303.95 Aligned_cols=279 Identities=18% Similarity=0.157 Sum_probs=186.9
Q ss_pred HHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCChh
Q 011751 25 EVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTS 104 (478)
Q Consensus 25 ~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~ 104 (478)
.+.+|++++++||||||||+++...++..... ++.+++++.|+++++.|+.+.+.. ..+++.........+.
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-~~~~~lil~Ptr~La~Q~~~~l~~-------~~v~~~~~~~~~v~Tp 75 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR-RRLRTLVLAPTRVVLSEMKEAFHG-------LDVKFHTQAFSAHGSG 75 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTTT-------SCEEEESSCCCCCCCS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-cCCeEEEEcchHHHHHHHHHHHhc-------CCeEEecccceeccCC
Confidence 46789999999999999997754544443222 245788999999999999987642 1233322111111111
Q ss_pred h----------hHHHHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccCCCCCCCCCCCchhhhccCCC
Q 011751 105 T----------RIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGND 174 (478)
Q Consensus 105 ~----------~~~~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 174 (478)
. ....++....+.+++++|+||+|..+...+..++++.+....
T Consensus 76 ~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~~--------------------------- 128 (440)
T 1yks_A 76 REVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARA--------------------------- 128 (440)
T ss_dssp SCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHHT---------------------------
T ss_pred ccceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhcc---------------------------
Confidence 1 112344445688999999999999866666666666654421
Q ss_pred CCCccccccccCCCCCCceEEEEcCCCChhHHHhhhCC-CCeEEeCCccccceEEecCCCCcchHHHHHHHHHHhhhcCC
Q 011751 175 TNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGC-AKAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEA 253 (478)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (478)
.+.++++||||++... ..+... .+... .....+.... ...+..+. +.
T Consensus 129 ---------------~~~~~l~~SAT~~~~~-~~~~~~~~~~~~----------~~~~~~~~~~-~~~~~~l~-----~~ 176 (440)
T 1yks_A 129 ---------------NESATILMTATPPGTS-DEFPHSNGEIED----------VQTDIPSEPW-NTGHDWIL-----AD 176 (440)
T ss_dssp ---------------TSCEEEEECSSCTTCC-CSSCCCSSCEEE----------EECCCCSSCC-SSSCHHHH-----HC
T ss_pred ---------------CCceEEEEeCCCCchh-hhhhhcCCCeeE----------eeeccChHHH-HHHHHHHH-----hc
Confidence 4679999999994431 112111 11111 1111111110 00111111 12
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeE
Q 011751 254 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIK 333 (478)
Q Consensus 254 ~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~ 333 (478)
++++|||||++++++.+++.|++. ++.+..+|| ++|..+++.|++|+.+|||||+++++|+|+| ++
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~---------~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~ 242 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA---------GKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VE 242 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT---------TCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc---------CCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ce
Confidence 689999999999999999999885 778999999 5788999999999999999999999999999 99
Q ss_pred EEEeCCcccceee-cCCCCcccceeeecCHHHHHHhhcccCCC-C-CCeEEEec
Q 011751 334 YVIDPGFVKARLY-DPVKGMESLLVVPISKAQALQRSGRAGRE-G-PGKCFRLY 384 (478)
Q Consensus 334 ~VI~~g~~~~~~y-d~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~-~G~~~~l~ 384 (478)
+|||+|+...+.| +...++......|.+.++|+||+|||||. + +|.||.++
T Consensus 243 ~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~ 296 (440)
T 1yks_A 243 RVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYS 296 (440)
T ss_dssp EEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred EEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEe
Confidence 9999999887766 33334444455799999999999999997 4 89999997
No 34
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.5e-36 Score=324.75 Aligned_cols=138 Identities=16% Similarity=0.251 Sum_probs=79.2
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEc--------cCCCCHHHHHhhcCcCCC-CccEEEEeccc
Q 011751 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPI--------FSSLPSEQQMRVFAPAAA-GFRKVILATNI 322 (478)
Q Consensus 252 ~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~--------h~~l~~~~r~~i~~~f~~-g~~~vlvaT~~ 322 (478)
.+++++||||+++..++.+++.|.+... ...+.+..+ ||+|++++|.++++.|++ |..+|||||++
T Consensus 396 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~-----~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v 470 (696)
T 2ykg_A 396 NPETITILFVKTRALVDALKNWIEGNPK-----LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSV 470 (696)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHCTT-----CCSCCEEC-----------------------------CCSCSEEEES
T ss_pred CCCCcEEEEeCcHHHHHHHHHHHHhCCC-----ccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEech
Confidence 3578899999999999999999987410 012556666 669999999999999998 99999999999
Q ss_pred cccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCCCCeEEEecCHhhH----------hcc
Q 011751 323 AETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEF----------DKL 392 (478)
Q Consensus 323 ~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~----------~~~ 392 (478)
+++|+|+|++++||+ || .|.+..+|+||+|| ||..+|.|+.++++.+. +.+
T Consensus 471 ~~~GiDip~v~~VI~--------~d----------~p~s~~~~~Qr~GR-GR~~~g~~~~l~~~~~~~~~~~~~~~~e~~ 531 (696)
T 2ykg_A 471 ADEGIDIAQCNLVIL--------YE----------YVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKM 531 (696)
T ss_dssp SCCC---CCCSEEEE--------ES----------CC--CCCC----------CCCEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred hhcCCcCccCCEEEE--------eC----------CCCCHHHHHHhhcc-CcCCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 999999999999999 88 46778889999999 99999999999987766 334
Q ss_pred cCCCCCcccccCchHHHHHHH
Q 011751 393 EDSTKPEIKRCNLSNVILQLK 413 (478)
Q Consensus 393 ~~~~~pei~~~~l~~~~l~~~ 413 (478)
.....|++...+...+..+++
T Consensus 532 ~~~~~~~~~~~~~~~~~~~i~ 552 (696)
T 2ykg_A 532 MNDSILRLQTWDEAVFREKIL 552 (696)
T ss_dssp HHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHhhccCHHHHHHHHH
Confidence 444455555555555544443
No 35
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=2.8e-35 Score=295.60 Aligned_cols=275 Identities=17% Similarity=0.180 Sum_probs=191.4
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecc-cC-----
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDD-RT----- 101 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~-~~----- 101 (478)
+|++++++||||||||.++...+++.... .+.+++++.|+++++.|+.+.+. + ..+++...... ..
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~-~g~~~lvl~Pt~~La~Q~~~~~~---~----~~v~~~~~~~~~~~~~~~~ 72 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK-KRLRTVILAPTRVVASEMYEALR---G----EPIRYMTPAVQSERTGNEI 72 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTT---T----SCEEEC---------CCCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEECcHHHHHHHHHHHhC---C----CeEEEEecCccccCCCCce
Confidence 47899999999999997754444422222 35579999999999999887663 2 23333222100 00
Q ss_pred ----ChhhhHHHHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccCCCCCCCCCCCchhhhccCCCCCC
Q 011751 102 ----STSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNG 177 (478)
Q Consensus 102 ----~~~~~~~~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 177 (478)
........++.+..+.+++++|+||+|..+...+..+..++.....
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~~~------------------------------ 122 (431)
T 2v6i_A 73 VDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRVSM------------------------------ 122 (431)
T ss_dssp EEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHT------------------------------
T ss_pred EEEEchHHHHHHHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHhhC------------------------------
Confidence 1111223455566689999999999999877777777777665421
Q ss_pred ccccccccCCCCCCceEEEEcCCCChhHHHhhhC-CCCeEEeCCccccceEEecCCCCcchHHHHHHHHHHhhhcCCCCC
Q 011751 178 INTLKQCQGRKFAPLKLIIMSASLDARGFSEYFG-CAKAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGD 256 (478)
Q Consensus 178 ~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (478)
.+.++++||||+... +.++.. ..++..+.. ..+...+ .. +..... +.+++
T Consensus 123 ------------~~~~~l~~SAT~~~~-~~~~~~~~~~i~~~~~----------~~~~~~~-~~----~~~~l~-~~~~~ 173 (431)
T 2v6i_A 123 ------------GDAGAIFMTATPPGT-TEAFPPSNSPIIDEET----------RIPDKAW-NS----GYEWIT-EFDGR 173 (431)
T ss_dssp ------------TSCEEEEEESSCTTC-CCSSCCCSSCCEEEEC----------CCCSSCC-SS----CCHHHH-SCSSC
T ss_pred ------------CCCcEEEEeCCCCcc-hhhhcCCCCceeeccc----------cCCHHHH-HH----HHHHHH-cCCCC
Confidence 568999999999542 112211 222222211 1111111 00 011111 23678
Q ss_pred EEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEE
Q 011751 257 ILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVI 336 (478)
Q Consensus 257 ~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI 336 (478)
+|||||++++++.+++.|++. ++.+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +.+||
T Consensus 174 ~lVF~~~~~~~~~l~~~L~~~---------~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI 239 (431)
T 2v6i_A 174 TVWFVHSIKQGAEIGTCLQKA---------GKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVI 239 (431)
T ss_dssp EEEECSSHHHHHHHHHHHHHT---------TCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHc---------CCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEE
Confidence 999999999999999999875 7789999997 688899999999999999999999999999 99999
Q ss_pred eCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEEec
Q 011751 337 DPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLY 384 (478)
Q Consensus 337 ~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~ 384 (478)
++|....+.|| ..++......|.+.++|+||+||+||.| .+.|+.+|
T Consensus 240 ~~g~~~~~v~d-~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~ 287 (431)
T 2v6i_A 240 DPRKTIKPILL-DGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAY 287 (431)
T ss_dssp ECCEEEEEEEE-TTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEE
T ss_pred ecCccccceec-ccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEE
Confidence 99999988888 5556556678999999999999999998 33344444
No 36
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=4.6e-36 Score=314.15 Aligned_cols=289 Identities=17% Similarity=0.189 Sum_probs=199.7
Q ss_pred cHHHHH-----HHHHHHh------cCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHh
Q 011751 15 IASVEK-----RLVEEVR------KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (478)
Q Consensus 15 ~~~~q~-----~~~~~l~------~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (478)
++++|+ ++++.+. ++++++++||||||||+++...++..... ++.+++++.|+++++.|+.+.+...
T Consensus 216 pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-~~~~~lilaPTr~La~Q~~~~l~~~- 293 (673)
T 2wv9_A 216 VSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-KRLRTAVLAPTRVVAAEMAEALRGL- 293 (673)
T ss_dssp EEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTTTS-
T ss_pred cCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-CCCcEEEEccHHHHHHHHHHHHhcC-
Confidence 445566 7777766 89999999999999997754544433222 3457899999999999999876422
Q ss_pred CCcCCCEEEEEEeecc-cC---------ChhhhHHHHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhccccc
Q 011751 84 GVELGQRVGYSIRFDD-RT---------STSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSAD 153 (478)
Q Consensus 84 ~~~~~~~vg~~~~~~~-~~---------~~~~~~~~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~ 153 (478)
+ +++...... .. ........++.+..+.+++++|+||+|+.+...+..+..++.....
T Consensus 294 ~------i~~~~~~l~~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~~------ 361 (673)
T 2wv9_A 294 P------VRYLTPAVQREHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVEA------ 361 (673)
T ss_dssp C------CEECCC---CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHHT------
T ss_pred C------eeeecccccccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHHHHhccc------
Confidence 1 111111000 00 1112223455556789999999999999877777777777665431
Q ss_pred CCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChhHHHhhhC-CCCeEEeCCccccceEEecCC
Q 011751 154 GHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFG-CAKAVHVQGRQFPVEILYTLY 232 (478)
Q Consensus 154 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 232 (478)
.+.++++||||++.. +.++.. ..++..+.. ..
T Consensus 362 ------------------------------------~~~~vl~~SAT~~~~-i~~~~~~~~~i~~v~~----------~~ 394 (673)
T 2wv9_A 362 ------------------------------------GEAAAIFMTATPPGT-SDPFPDTNSPVHDVSS----------EI 394 (673)
T ss_dssp ------------------------------------TSCEEEEECSSCTTC-CCSSCCCSSCEEEEEC----------CC
T ss_pred ------------------------------------cCCcEEEEcCCCChh-hhhhcccCCceEEEee----------ec
Confidence 457999999999433 111221 122222211 11
Q ss_pred CCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCC
Q 011751 233 PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG 312 (478)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g 312 (478)
+..... ..+.. .. ..++++||||+++++++.+++.|.+. ++.+..+|| ++|.++++.|++|
T Consensus 395 ~~~~~~-~~l~~----l~-~~~~~~lVF~~s~~~~e~la~~L~~~---------g~~v~~lHg----~eR~~v~~~F~~g 455 (673)
T 2wv9_A 395 PDRAWS-SGFEW----IT-DYAGKTVWFVASVKMSNEIAQCLQRA---------GKRVIQLNR----KSYDTEYPKCKNG 455 (673)
T ss_dssp CSSCCS-SCCHH----HH-SCCSCEEEECSSHHHHHHHHHHHHTT---------TCCEEEECS----SSHHHHGGGGGTC
T ss_pred CHHHHH-HHHHH----HH-hCCCCEEEEECCHHHHHHHHHHHHhC---------CCeEEEeCh----HHHHHHHHHHHCC
Confidence 111110 01111 11 24789999999999999999999875 778999999 3899999999999
Q ss_pred ccEEEEeccccccccccCCeEEEEeCCcccce--eecCCCCcccceeeecCHHHHHHhhcccCCC-C-CCeEEEec
Q 011751 313 FRKVILATNIAETSVTIPGIKYVIDPGFVKAR--LYDPVKGMESLLVVPISKAQALQRSGRAGRE-G-PGKCFRLY 384 (478)
Q Consensus 313 ~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~--~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~-~G~~~~l~ 384 (478)
+.+|||||+++++|+|+| +++|||+|....+ .||...++..+...|.|.++|+||+|||||. + .|.||.++
T Consensus 456 ~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~ 530 (673)
T 2wv9_A 456 DWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYG 530 (673)
T ss_dssp CCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEEC
T ss_pred CceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEE
Confidence 999999999999999999 9999999866543 3555444444445799999999999999999 4 89999997
No 37
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=7.7e-35 Score=303.48 Aligned_cols=120 Identities=16% Similarity=0.241 Sum_probs=58.8
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHh--cCC-CCCCCeEEEEccCCCCHHHHHhhcCcCCC-CccEEEEecccccccc
Q 011751 252 EAPGDILVFLTGQEEIESVERLVQERLL--QLP-EASRKLVTVPIFSSLPSEQQMRVFAPAAA-GFRKVILATNIAETSV 327 (478)
Q Consensus 252 ~~~~~~LVF~~s~~~~~~l~~~l~~~~~--~~~-~~~~~~~v~~~h~~l~~~~r~~i~~~f~~-g~~~vlvaT~~~~~Gv 327 (478)
.+++++||||+++..++.+++.|.+... ... ....+.....+||+|++++|..+++.|++ |..+|||||+++++|+
T Consensus 388 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~Gi 467 (556)
T 4a2p_A 388 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 467 (556)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC------
T ss_pred CCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCC
Confidence 5578999999999999999999975310 000 01124455667899999999999999999 9999999999999999
Q ss_pred ccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCCCCeEEEecCHhhHh
Q 011751 328 TIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFD 390 (478)
Q Consensus 328 dip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~ 390 (478)
|+|++++||+ || .|.+..+|+||+|| ||..+|.||.|+++.+.+
T Consensus 468 Dip~v~~VI~--------~d----------~p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 468 DIVQCNLVVL--------YE----------YSGNVTKMIQVRGR-GRAAGSKCILVTSKTEVV 511 (556)
T ss_dssp -----CEEEE--------ET----------CCSCHHHHHHC---------CCEEEEESCHHHH
T ss_pred CchhCCEEEE--------eC----------CCCCHHHHHHhcCC-CCCCCceEEEEEeCcchH
Confidence 9999999999 88 58899999999999 999999999999877653
No 38
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=9.2e-34 Score=289.95 Aligned_cols=112 Identities=23% Similarity=0.382 Sum_probs=100.5
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccC--------CCCHHHHHhhcCcCCCCccEEEEecccc
Q 011751 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFS--------SLPSEQQMRVFAPAAAGFRKVILATNIA 323 (478)
Q Consensus 252 ~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~--------~l~~~~r~~i~~~f~~g~~~vlvaT~~~ 323 (478)
.+++++||||++++.++.+++.|.+. ++.+..+|| +++.++|..+++.|++|..+|||||+++
T Consensus 359 ~~~~k~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~ 429 (494)
T 1wp9_A 359 KQNSKIIVFTNYRETAKKIVNELVKD---------GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVG 429 (494)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHT---------TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGG
T ss_pred CCCCeEEEEEccHHHHHHHHHHHHHc---------CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCcc
Confidence 46889999999999999999999886 778899999 9999999999999999999999999999
Q ss_pred ccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCCCCeEEEecCHhhHh
Q 011751 324 ETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFD 390 (478)
Q Consensus 324 ~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~ 390 (478)
++|+|+|++++||+ || .|.+...|.||+|||||.|+|.+|.|++++..+
T Consensus 430 ~~Gldl~~~~~Vi~--------~d----------~~~~~~~~~Qr~GR~~R~g~g~~~~l~~~~t~e 478 (494)
T 1wp9_A 430 EEGLDVPEVDLVVF--------YE----------PVPSAIRSIQRRGRTGRHMPGRVIILMAKGTRD 478 (494)
T ss_dssp GGGGGSTTCCEEEE--------SS----------CCHHHHHHHHHHTTSCSCCCSEEEEEEETTSHH
T ss_pred ccCCCchhCCEEEE--------eC----------CCCCHHHHHHHHhhccCCCCceEEEEEecCCHH
Confidence 99999999999998 66 477889999999999999999999999876543
No 39
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=2.1e-33 Score=292.38 Aligned_cols=120 Identities=19% Similarity=0.300 Sum_probs=78.7
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhc---CCCCCCCeEEEEccCCCCHHHHHhhcCcCCC-CccEEEEecccccccc
Q 011751 252 EAPGDILVFLTGQEEIESVERLVQERLLQ---LPEASRKLVTVPIFSSLPSEQQMRVFAPAAA-GFRKVILATNIAETSV 327 (478)
Q Consensus 252 ~~~~~~LVF~~s~~~~~~l~~~l~~~~~~---~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~-g~~~vlvaT~~~~~Gv 327 (478)
.+.+++||||+++..++.++..|.+.... ......+.....+||+|++++|..+++.|++ |..+|||||+++++|+
T Consensus 387 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~Gl 466 (555)
T 3tbk_A 387 KPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGI 466 (555)
T ss_dssp CTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCE
T ss_pred CCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCC
Confidence 45789999999999999999999874210 0001113345566789999999999999999 9999999999999999
Q ss_pred ccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCCCCeEEEecCHhhHh
Q 011751 328 TIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFD 390 (478)
Q Consensus 328 dip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~ 390 (478)
|+|++++||+ || .|.+..+|+||+|| ||..+|.||.|+++.+.+
T Consensus 467 Dlp~v~~VI~--------~d----------~p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~ 510 (555)
T 3tbk_A 467 DIAECNLVIL--------YE----------YVGNVIKMIQTRGR-GRARDSKCFLLTSSADVI 510 (555)
T ss_dssp ETTSCSEEEE--------ES----------CCSSCCCEECSSCC-CTTTSCEEEEEESCHHHH
T ss_pred ccccCCEEEE--------eC----------CCCCHHHHHHhcCc-CcCCCceEEEEEcCCCHH
Confidence 9999999999 88 47788889999999 999999999999876543
No 40
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.9e-33 Score=303.84 Aligned_cols=119 Identities=16% Similarity=0.251 Sum_probs=64.2
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHh--cCC-CCCCCeEEEEccCCCCHHHHHhhcCcCCC-CccEEEEecccccccc
Q 011751 252 EAPGDILVFLTGQEEIESVERLVQERLL--QLP-EASRKLVTVPIFSSLPSEQQMRVFAPAAA-GFRKVILATNIAETSV 327 (478)
Q Consensus 252 ~~~~~~LVF~~s~~~~~~l~~~l~~~~~--~~~-~~~~~~~v~~~h~~l~~~~r~~i~~~f~~-g~~~vlvaT~~~~~Gv 327 (478)
.+++++||||+++..++.+++.|.+... .+. ....+.....+||+|++.+|..+++.|++ |..+|||||+++++||
T Consensus 629 ~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GI 708 (797)
T 4a2q_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 708 (797)
T ss_dssp CSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-----
T ss_pred CCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCC
Confidence 5578999999999999999999976310 000 01124456677999999999999999999 9999999999999999
Q ss_pred ccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCCCCeEEEecCHhhH
Q 011751 328 TIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEF 389 (478)
Q Consensus 328 dip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~ 389 (478)
|+|++++||+ || .|.+..+|+||+|| ||..+|.||.|+++.+.
T Consensus 709 Dlp~v~~VI~--------yd----------~p~s~~~~iQr~GR-GR~~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 709 DIVQCNLVVL--------YE----------YSGNVTKMIQVRGR-GRAAGSKCILVTSKTEV 751 (797)
T ss_dssp --CCCSEEEE--------ES----------CCSCHHHHHTC--------CCCEEEEECCHHH
T ss_pred CchhCCEEEE--------eC----------CCCCHHHHHHhcCC-CCCCCceEEEEEeCCcH
Confidence 9999999999 88 57899999999999 99999999999987654
No 41
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=2.1e-32 Score=303.01 Aligned_cols=299 Identities=18% Similarity=0.195 Sum_probs=207.5
Q ss_pred hhhcCCcHHHHHHHHHHHhc----CC--EEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHH
Q 011751 9 QRKSLPIASVEKRLVEEVRK----ND--ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (478)
Q Consensus 9 ~~~~~~~~~~q~~~~~~l~~----~~--~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~ 82 (478)
....+.++++|.++++.+.+ ++ +++++||||||||.++..++..... .+..+++++|++.++.|..+.+.+.
T Consensus 598 ~~f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~--~g~~vlvlvPt~~La~Q~~~~~~~~ 675 (1151)
T 2eyq_A 598 DSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD--NHKQVAVLVPTTLLAQQHYDNFRDR 675 (1151)
T ss_dssp HTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT--TTCEEEEECSSHHHHHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH--hCCeEEEEechHHHHHHHHHHHHHH
Confidence 34556679999999999876 66 9999999999999776555544322 3568999999999999999999877
Q ss_pred hCCcCCCEEEEEEeecccCChhhhHH--------------HHh-hCcCcCCCcceEeecccccchhhhHHHHHHHHHHHh
Q 011751 83 SGVELGQRVGYSIRFDDRTSTSTRIK--------------EAL-LDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNA 147 (478)
Q Consensus 83 ~~~~~~~~vg~~~~~~~~~~~~~~~~--------------~~l-~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~ 147 (478)
+.. .+..++...++.+.......+. .++ .+..+.+++++|+||+|....... ..++. .
T Consensus 676 ~~~-~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvIiDEaH~~g~~~~---~~l~~---l 748 (1151)
T 2eyq_A 676 FAN-WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHK---ERIKA---M 748 (1151)
T ss_dssp STT-TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEEESGGGSCHHHH---HHHHH---H
T ss_pred hhc-CCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEEEechHhcChHHH---HHHHH---h
Confidence 652 3344443322111100000000 112 224578899999999997443221 11211 1
Q ss_pred hcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChhHHHhhhCCCCeE-EeCC---ccc
Q 011751 148 RSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAV-HVQG---RQF 223 (478)
Q Consensus 148 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~-~~~~---~~~ 223 (478)
+ .+.++++||||+.+..+...+...... .+.. ...
T Consensus 749 ~-----------------------------------------~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r~ 787 (1151)
T 2eyq_A 749 R-----------------------------------------ANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRL 787 (1151)
T ss_dssp H-----------------------------------------TTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCBCB
T ss_pred c-----------------------------------------CCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCCcc
Confidence 1 567999999999766665544433222 2211 112
Q ss_pred cceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHH
Q 011751 224 PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQM 303 (478)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~ 303 (478)
++..++..... ......+.... ..+++++|||++.++++.+++.|++.+. +..+..+||+|++.+|+
T Consensus 788 ~i~~~~~~~~~----~~i~~~il~~l--~~g~qvlvf~~~v~~~~~l~~~L~~~~p-------~~~v~~lhg~~~~~eR~ 854 (1151)
T 2eyq_A 788 AVKTFVREYDS----MVVREAILREI--LRGGQVYYLYNDVENIQKAAERLAELVP-------EARIAIGHGQMRERELE 854 (1151)
T ss_dssp CEEEEEEECCH----HHHHHHHHHHH--TTTCEEEEECCCSSCHHHHHHHHHHHCT-------TSCEEECCSSCCHHHHH
T ss_pred ccEEEEecCCH----HHHHHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHHhCC-------CCeEEEEeCCCCHHHHH
Confidence 33333322211 12222222222 3478999999999999999999988632 56789999999999999
Q ss_pred hhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEE
Q 011751 304 RVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFR 382 (478)
Q Consensus 304 ~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~ 382 (478)
.+++.|++|+.+|||||+++++|+|+|++++||. +++. +.+.++|.||+||+||.| .|.||.
T Consensus 855 ~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi--------~~~~---------~~~l~~l~Qr~GRvgR~g~~g~~~l 917 (1151)
T 2eyq_A 855 RVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII--------ERAD---------HFGLAQLHQLRGRVGRSHHQAYAWL 917 (1151)
T ss_dssp HHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEE--------TTTT---------SSCHHHHHHHHTTCCBTTBCEEEEE
T ss_pred HHHHHHHcCCCcEEEECCcceeeecccCCcEEEE--------eCCC---------CCCHHHHHHHHhccCcCCCceEEEE
Confidence 9999999999999999999999999999999996 4421 346778999999999999 999999
Q ss_pred ecCHh
Q 011751 383 LYPEN 387 (478)
Q Consensus 383 l~~~~ 387 (478)
+++++
T Consensus 918 l~~~~ 922 (1151)
T 2eyq_A 918 LTPHP 922 (1151)
T ss_dssp EECCG
T ss_pred EECCc
Confidence 99754
No 42
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.8e-33 Score=298.01 Aligned_cols=295 Identities=19% Similarity=0.251 Sum_probs=198.4
Q ss_pred hhcCCcHHHHHHHHHHHhcC------CEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHh
Q 011751 10 RKSLPIASVEKRLVEEVRKN------DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (478)
Q Consensus 10 ~~~~~~~~~q~~~~~~l~~~------~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (478)
...|.++++|++++..+.++ .+++++||||||||.++..+++.... .+..++++.|+++++.|..+++.+.+
T Consensus 364 ~lpf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~--~g~qvlvlaPtr~La~Q~~~~l~~~~ 441 (780)
T 1gm5_A 364 SLPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE--AGFQTAFMVPTSILAIQHYRRTVESF 441 (780)
T ss_dssp HSSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH--HTSCEEEECSCHHHHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 45568899999999998876 58999999999999777776665432 25679999999999999999998777
Q ss_pred CCcCCCEEEEEEeecccCChhhhH---H---------------HHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHH
Q 011751 84 GVELGQRVGYSIRFDDRTSTSTRI---K---------------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQ 145 (478)
Q Consensus 84 ~~~~~~~vg~~~~~~~~~~~~~~~---~---------------~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~ 145 (478)
.. .+..++... +..+...+. . .+.....+.+++++|+||+|.....
T Consensus 442 ~~-~gi~v~~l~---G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVIDEaHr~g~~------------ 505 (780)
T 1gm5_A 442 SK-FNIHVALLI---GATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIIDEQHRFGVK------------ 505 (780)
T ss_dssp TC-SSCCEEECC---SSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEESCCCC---------------
T ss_pred hh-cCceEEEEe---CCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEecccchhhHH------------
Confidence 42 334444322 122221111 1 1122345789999999999942100
Q ss_pred HhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChhHHH-hhhCCCCeEEeCC---c
Q 011751 146 NARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFS-EYFGCAKAVHVQG---R 221 (478)
Q Consensus 146 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~-~~~~~~~~~~~~~---~ 221 (478)
. ...+... ..+.++++||||+.++.++ .+++......+.. .
T Consensus 506 --------------------------q-----r~~l~~~----~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~ 550 (780)
T 1gm5_A 506 --------------------------Q-----REALMNK----GKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPG 550 (780)
T ss_dssp ---------------------------------CCCCSS----SSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSS
T ss_pred --------------------------H-----HHHHHHh----CCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCC
Confidence 0 0001111 1457899999999777665 3455444434332 1
Q ss_pred cccceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHH--------HHHHHHHHHHHHhcCCCCCCCeEEEEc
Q 011751 222 QFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE--------IESVERLVQERLLQLPEASRKLVTVPI 293 (478)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~--------~~~l~~~l~~~~~~~~~~~~~~~v~~~ 293 (478)
..++...+... .........+.... ..+++++||||+.++ ++.+++.|.+. ..+++.+..+
T Consensus 551 r~~i~~~~~~~---~~~~~l~~~i~~~l--~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~------~~~~~~v~~l 619 (780)
T 1gm5_A 551 RKEVQTMLVPM---DRVNEVYEFVRQEV--MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKE------VFPEFKLGLM 619 (780)
T ss_dssp CCCCEECCCCS---STHHHHHHHHHHHT--TTSCCBCCBCCCC--------CHHHHHHHSGGGS------CC---CBCCC
T ss_pred CcceEEEEecc---chHHHHHHHHHHHH--hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhh------hcCCCcEEEE
Confidence 23444333322 22333333333322 347889999997654 34444444330 1126778899
Q ss_pred cCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccC
Q 011751 294 FSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAG 373 (478)
Q Consensus 294 h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaG 373 (478)
||+|++++|..+++.|++|+.+|||||+++++|+|+|++++||+ ||+.. .+.+++.||+||||
T Consensus 620 HG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi--------~d~~r---------~~l~~l~Qr~GRaG 682 (780)
T 1gm5_A 620 HGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVI--------ENPER---------FGLAQLHQLRGRVG 682 (780)
T ss_dssp CSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEB--------CSCSS---------SCTTHHHHHHHTSC
T ss_pred eCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEE--------eCCCC---------CCHHHHHHHhcccC
Confidence 99999999999999999999999999999999999999999998 66321 35678999999999
Q ss_pred CCC-CCeEEEecC
Q 011751 374 REG-PGKCFRLYP 385 (478)
Q Consensus 374 R~~-~G~~~~l~~ 385 (478)
|.| +|.|+.+++
T Consensus 683 R~g~~g~~ill~~ 695 (780)
T 1gm5_A 683 RGGQEAYCFLVVG 695 (780)
T ss_dssp CSSTTCEEECCCC
T ss_pred cCCCCCEEEEEEC
Confidence 998 999999997
No 43
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=301.21 Aligned_cols=109 Identities=17% Similarity=0.246 Sum_probs=88.0
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCC--------CCHHHHHhhcCcCCCCccEEEEecccccc
Q 011751 254 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSS--------LPSEQQMRVFAPAAAGFRKVILATNIAET 325 (478)
Q Consensus 254 ~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~--------l~~~~r~~i~~~f~~g~~~vlvaT~~~~~ 325 (478)
++++||||++++.++.+++.|.+.. .....++.+..+||+ |+.++|.++++.|++|..+|||||+++++
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~---~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~ 476 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENE---KFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEE 476 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSC---SCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCT
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCc---cccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Confidence 7899999999999999999997630 001125788899999 99999999999999999999999999999
Q ss_pred ccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCCCCeEEEec
Q 011751 326 SVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLY 384 (478)
Q Consensus 326 Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~ 384 (478)
|||+|++++||+ || .|.+..+|+||+|||||.| +.++.++
T Consensus 477 GIDip~v~~VI~--------~d----------~p~s~~~~~Qr~GRArr~g-~~~~l~~ 516 (699)
T 4gl2_A 477 GLDIKECNIVIR--------YG----------LVTNEIAMVQARGRARADE-STYVLVA 516 (699)
T ss_dssp TSCCCSCCCCEE--------ES----------CCCCHHHHHHHHTTSCSSS-CEEEEEE
T ss_pred CCccccCCEEEE--------eC----------CCCCHHHHHHHcCCCCCCC-ceEEEEE
Confidence 999999999999 88 5889999999999987766 4444444
No 44
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.98 E-value=1.3e-32 Score=302.86 Aligned_cols=280 Identities=15% Similarity=0.140 Sum_probs=180.1
Q ss_pred HHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCc
Q 011751 7 LQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVE 86 (478)
Q Consensus 7 ~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~ 86 (478)
......+.++++|.++++.+.+|++++++||||||||+++..++.... ..+..++++.|+++|+.|+.+++.+ ++ .
T Consensus 71 ~~~~~gf~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~--~~~~~~Lil~PtreLa~Q~~~~l~~-l~-~ 146 (1104)
T 4ddu_A 71 FKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQK-LA-D 146 (1104)
T ss_dssp HHHHSSSCCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHT-TS-C
T ss_pred HHHhcCCCCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH--hcCCeEEEEechHHHHHHHHHHHHH-hh-C
Confidence 334456789999999999999999999999999999974434433322 3466799999999999999999887 33 3
Q ss_pred CCCEEEEEEeeccc------------------CChhhhHHHHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhh
Q 011751 87 LGQRVGYSIRFDDR------------------TSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (478)
Q Consensus 87 ~~~~vg~~~~~~~~------------------~~~~~~~~~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~ 148 (478)
.+..++...+.... +.+..++..++....+.++++||+||||+.....
T Consensus 147 ~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~-------------- 212 (1104)
T 4ddu_A 147 EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKAS-------------- 212 (1104)
T ss_dssp TTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSS--------------
T ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCcccccc--------------
Confidence 44455544322211 1122233222222346789999999999522111
Q ss_pred cccccCCCCCCCCCCCchhhhc-cCCCCC-Ccccccccc-----CC--CCCCceEEEEcCCCChh-----HHHhhhCCCC
Q 011751 149 SKSADGHSNGNNNNENSDMILD-RGNDTN-GINTLKQCQ-----GR--KFAPLKLIIMSASLDAR-----GFSEYFGCAK 214 (478)
Q Consensus 149 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~-~~~~~~~~~-----~~--~~~~~~~i~lSAT~~~~-----~~~~~~~~~~ 214 (478)
...|.|++ .++... +..++..++ .. ...+.|+++||||+.++ .+..++. ..
T Consensus 213 --------------r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~-i~ 277 (1104)
T 4ddu_A 213 --------------RNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-FT 277 (1104)
T ss_dssp --------------HHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC-CC
T ss_pred --------------ccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee-EE
Confidence 01133444 443333 233333222 00 11567999999996322 2233332 11
Q ss_pred eEEeCCccccceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEE-Ec
Q 011751 215 AVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTV-PI 293 (478)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~-~~ 293 (478)
+.........+...+..... .......+.. .++++||||++++.++.++..|.+. ++.+. .+
T Consensus 278 v~~~~~~~~~i~~~~~~~~k---~~~L~~ll~~-----~~~~~LVF~~s~~~a~~l~~~L~~~---------g~~~~~~l 340 (1104)
T 4ddu_A 278 VGRLVSVARNITHVRISSRS---KEKLVELLEI-----FRDGILIFAQTEEEGKELYEYLKRF---------KFNVGETW 340 (1104)
T ss_dssp CCBCCCCCCCEEEEEESCCC---HHHHHHHHHH-----HCSSEEEEESSSHHHHHHHHHHHHT---------TCCEEESS
T ss_pred eccCCCCcCCceeEEEecCH---HHHHHHHHHh-----cCCCEEEEECcHHHHHHHHHHHHhC---------CCCeeeEe
Confidence 11111112233344433322 2222222222 2589999999999999999999886 78887 99
Q ss_pred cCCCCHHHHHhhcCcCCCCccEEEEe----ccccccccccCC-eEEEEeCCccc
Q 011751 294 FSSLPSEQQMRVFAPAAAGFRKVILA----TNIAETSVTIPG-IKYVIDPGFVK 342 (478)
Q Consensus 294 h~~l~~~~r~~i~~~f~~g~~~vlva----T~~~~~Gvdip~-v~~VI~~g~~~ 342 (478)
|| +|++ ++.|++|+.+|||| |+++++|+|+|+ |++||++|+++
T Consensus 341 hg-----~rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 341 SE-----FEKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp SS-----HHHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred cC-----cHHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 98 2555 99999999999999 999999999999 99999977766
No 45
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.98 E-value=3.4e-32 Score=297.19 Aligned_cols=119 Identities=16% Similarity=0.251 Sum_probs=64.7
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHh--cCC-CCCCCeEEEEccCCCCHHHHHhhcCcCCC-CccEEEEecccccccc
Q 011751 252 EAPGDILVFLTGQEEIESVERLVQERLL--QLP-EASRKLVTVPIFSSLPSEQQMRVFAPAAA-GFRKVILATNIAETSV 327 (478)
Q Consensus 252 ~~~~~~LVF~~s~~~~~~l~~~l~~~~~--~~~-~~~~~~~v~~~h~~l~~~~r~~i~~~f~~-g~~~vlvaT~~~~~Gv 327 (478)
.+++++||||++++.++.+++.|.+... .+. ....+.....+||+|+..+|..+++.|++ |..+|||||+++++||
T Consensus 629 ~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGI 708 (936)
T 4a2w_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 708 (936)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC-----
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCC
Confidence 4578999999999999999999987410 000 00124455667999999999999999999 9999999999999999
Q ss_pred ccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCCCCeEEEecCHhhH
Q 011751 328 TIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEF 389 (478)
Q Consensus 328 dip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~ 389 (478)
|+|++++||+ || .|.+..+|+||+|| ||..+|.||.|+++...
T Consensus 709 Dlp~v~~VI~--------yD----------~p~s~~~~iQr~GR-GR~~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 709 DIVQCNLVVL--------YE----------YSGNVTKMIQVRGR-GRAAGSKCILVTSKTEV 751 (936)
T ss_dssp -CCCCSEEEE--------ES----------CCSCSHHHHCC--------CCCEEEEESCHHH
T ss_pred cchhCCEEEE--------eC----------CCCCHHHHHHhcCC-CCCCCCEEEEEEeCCCH
Confidence 9999999999 88 47888999999999 99999999999976543
No 46
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.97 E-value=7.5e-31 Score=288.99 Aligned_cols=274 Identities=14% Similarity=0.126 Sum_probs=163.4
Q ss_pred HHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCC
Q 011751 6 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGV 85 (478)
Q Consensus 6 ~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~ 85 (478)
.......+++ ++|.++++.+.+|++++++||||||||+ +.+.++..... .+..++++.|+++++.|+.+.+.+....
T Consensus 49 ~~~~~~g~~p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~-~~~~~lil~PtreLa~Q~~~~l~~l~~~ 125 (1054)
T 1gku_B 49 FFRKCVGEPR-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL-KGKRCYVIFPTSLLVIQAAETIRKYAEK 125 (1054)
T ss_dssp HHHTTTCSCC-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-TSCCEEEEESCHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCCH-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-cCCeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 3344455667 9999999999999999999999999995 33333332222 3567999999999999999998776543
Q ss_pred cCCC----EEEEEEeecc----------------cCChhhhHHHHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHH
Q 011751 86 ELGQ----RVGYSIRFDD----------------RTSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQ 145 (478)
Q Consensus 86 ~~~~----~vg~~~~~~~----------------~~~~~~~~~~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~ 145 (478)
.+. .++...+... .+.+..++...+.. +.+++++|+||||+...+...+..+++.
T Consensus 126 -~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~--L~~l~~lViDEah~~l~~~~~~~~i~~~-- 200 (1054)
T 1gku_B 126 -AGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE--LGHFDFIFVDDVDAILKASKNVDKLLHL-- 200 (1054)
T ss_dssp -TCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTT--SCCCSEEEESCHHHHHTSTHHHHHHHHH--
T ss_pred -cCCCccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHH--hccCCEEEEeChhhhhhccccHHHHHHH--
Confidence 222 3443222111 11222333333333 6789999999999522111111111111
Q ss_pred HhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCCh-hHHH-hhhCCCCeEEeCCc--
Q 011751 146 NARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA-RGFS-EYFGCAKAVHVQGR-- 221 (478)
Q Consensus 146 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~-~~~~-~~~~~~~~~~~~~~-- 221 (478)
.++...... ..++ ...+++++|||++. ..+. .+++....+.+...
T Consensus 201 -------------------------lgf~~~~~~--~~~~----~~~q~~l~SAT~t~~~~~~~~~~~~~~~i~v~~~~~ 249 (1054)
T 1gku_B 201 -------------------------LGFHYDLKT--KSWV----GEARGCLMVSTATAKKGKKAELFRQLLNFDIGSSRI 249 (1054)
T ss_dssp -------------------------TTEEEETTT--TEEE----ECCSSEEEECCCCSCCCTTHHHHHHHHCCCCSCCEE
T ss_pred -------------------------hCcchhhhh--hhcc----cCCceEEEEecCCCchhHHHHHhhcceEEEccCccc
Confidence 010000000 0111 45678999999933 3222 22221111111111
Q ss_pred -cccceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHH
Q 011751 222 -QFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSE 300 (478)
Q Consensus 222 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~ 300 (478)
...+...+......+.+ ..+... .++++||||+++++++.++..|.+ .+.+..+||++.
T Consensus 250 ~~~~i~~~~~~~~k~~~L-------~~ll~~-~~~~~LVF~~t~~~a~~l~~~L~~----------~~~v~~lhg~~~-- 309 (1054)
T 1gku_B 250 TVRNVEDVAVNDESISTL-------SSILEK-LGTGGIIYARTGEEAEEIYESLKN----------KFRIGIVTATKK-- 309 (1054)
T ss_dssp CCCCEEEEEESCCCTTTT-------HHHHTT-SCSCEEEEESSHHHHHHHHHTTTT----------SSCEEECTTSSS--
T ss_pred CcCCceEEEechhHHHHH-------HHHHhh-cCCCEEEEEcCHHHHHHHHHHHhh----------ccCeeEEeccHH--
Confidence 12233344332222222 122222 267899999999999999988864 256889999983
Q ss_pred HHHhhcCcCCCCccEEEEe----ccccccccccCCe-EEEEeCCcc
Q 011751 301 QQMRVFAPAAAGFRKVILA----TNIAETSVTIPGI-KYVIDPGFV 341 (478)
Q Consensus 301 ~r~~i~~~f~~g~~~vlva----T~~~~~Gvdip~v-~~VI~~g~~ 341 (478)
.+++.|++|..+|||| |+++++|+|+|+| ++||++|..
T Consensus 310 ---~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 310 ---GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp ---HHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCC
T ss_pred ---HHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 5677899999999999 9999999999995 999997776
No 47
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.97 E-value=3.1e-31 Score=270.67 Aligned_cols=286 Identities=15% Similarity=0.148 Sum_probs=186.8
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEE
Q 011751 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRV 91 (478)
Q Consensus 12 ~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~v 91 (478)
.+.++++|.+++..+.+++++++++|||+|||.++..++... +..+++++|+++++.|..+++.+ ++.. .+
T Consensus 91 ~~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----~~~~Lvl~P~~~L~~Q~~~~~~~-~~~~---~v 161 (472)
T 2fwr_A 91 EISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGI-FGEE---YV 161 (472)
T ss_dssp CCCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----CSCEEEEESSHHHHHHHHHHGGG-GCGG---GE
T ss_pred CCCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHh-CCCc---ce
Confidence 457899999999999999999999999999997776666654 45789999999999999998877 5433 03
Q ss_pred EEEEeec-----ccCChhhhHHHHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccCCCCCCCCCCCch
Q 011751 92 GYSIRFD-----DRTSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSD 166 (478)
Q Consensus 92 g~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~ 166 (478)
+...... ..+.+...+..... ....++++||+||+|......
T Consensus 162 ~~~~g~~~~~~~Ivv~T~~~l~~~~~-~~~~~~~liIvDEaH~~~~~~-------------------------------- 208 (472)
T 2fwr_A 162 GEFSGRIKELKPLTVSTYDSAYVNAE-KLGNRFMLLIFDEVHHLPAES-------------------------------- 208 (472)
T ss_dssp EEBSSSCBCCCSEEEEEHHHHHHTHH-HHTTTCSEEEEETGGGTTSTT--------------------------------
T ss_pred EEECCCcCCcCCEEEEEcHHHHHHHH-HhcCCCCEEEEECCcCCCChH--------------------------------
Confidence 3211111 01122222222111 123569999999999421110
Q ss_pred hhhccCCCCCCccccccccCCCCCCceEEEEcCCCC-hh----HHHhhhCCCCeEEeC-----Cc-cccceE--EecC--
Q 011751 167 MILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLD-AR----GFSEYFGCAKAVHVQ-----GR-QFPVEI--LYTL-- 231 (478)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~-~~----~~~~~~~~~~~~~~~-----~~-~~~~~~--~~~~-- 231 (478)
...++..+ ...++++||||+. .+ .+..+++.. ..... .. ..+... ....
T Consensus 209 ----------~~~~~~~~-----~~~~~l~lSATp~~~~~~~~~l~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~~~~ 272 (472)
T 2fwr_A 209 ----------YVQIAQMS-----IAPFRLGLTATFEREDGRHEILKEVVGGK-VFELFPDSLAGKHLAKYTIKRIFVPLA 272 (472)
T ss_dssp ----------THHHHHTC-----CCSEEEEEESCCCCTTSGGGSHHHHTCCE-EEECCHHHHTSCCCCSEEECCEEECCC
T ss_pred ----------HHHHHHhc-----CCCeEEEEecCccCCCCHHHHHHHHhCCe-EeecCHHHHhcCcCCCeEEEEEEcCCC
Confidence 01111111 4568999999993 11 233333311 00000 00 000000 0000
Q ss_pred ----------------------------------------CCC--cch------------HHHHHHHHHHhhhcCCCCCE
Q 011751 232 ----------------------------------------YPE--PDY------------LDATLITIFQVHLDEAPGDI 257 (478)
Q Consensus 232 ----------------------------------------~~~--~~~------------~~~~~~~~~~~~~~~~~~~~ 257 (478)
.+. ... .......+..+.....++++
T Consensus 273 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~ 352 (472)
T 2fwr_A 273 EDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKI 352 (472)
T ss_dssp HHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCB
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcE
Confidence 000 000 00112333334444568899
Q ss_pred EEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEe
Q 011751 258 LVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVID 337 (478)
Q Consensus 258 LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~ 337 (478)
||||++.+.++.+++.|. +..+||+++..+|.++++.|++|..+|||||+++++|+|+|++++||+
T Consensus 353 lvF~~~~~~~~~l~~~l~--------------~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~ 418 (472)
T 2fwr_A 353 IIFTRHNELVYRISKVFL--------------IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVI 418 (472)
T ss_dssp CCBCSCHHHHHHHHHHTT--------------CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEE
T ss_pred EEEECCHHHHHHHHHHhC--------------cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEE
Confidence 999999999998888762 346799999999999999999999999999999999999999999998
Q ss_pred CCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCCCC----eEEEecCHh
Q 011751 338 PGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPG----KCFRLYPEN 387 (478)
Q Consensus 338 ~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G----~~~~l~~~~ 387 (478)
|| .|.+..+|.||+|||||.|+| .+|.+++++
T Consensus 419 --------~~----------~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 419 --------MS----------GSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp --------EC----------CSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred --------EC----------CCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 77 467889999999999999966 355666543
No 48
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.96 E-value=3.4e-31 Score=272.98 Aligned_cols=294 Identities=14% Similarity=0.092 Sum_probs=187.0
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEE
Q 011751 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRV 91 (478)
Q Consensus 12 ~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~v 91 (478)
.+.++++|.+++..+.+++++++++|||||||.++..++..... ..+.+++++.|+++++.|..+.+.+... ..+..+
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~-~~~~~vlvl~P~~~L~~Q~~~~~~~~~~-~~~~~v 188 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLE-NYEGKILIIVPTTALTTQMADDFVDYRL-FSHAMI 188 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHH-HCSSEEEEEESSHHHHHHHHHHHHHTTS-SCGGGE
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHh-CCCCeEEEEECcHHHHHHHHHHHHHhhc-CCccce
Confidence 45789999999999999999999999999999777555544322 2234899999999999999999865422 211222
Q ss_pred EEEEeeccc-----------CChhhhHHHHhhC--cCcCCCcceEeecccccchhhhHHHHHHHHHHHhhcccccCCCCC
Q 011751 92 GYSIRFDDR-----------TSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNG 158 (478)
Q Consensus 92 g~~~~~~~~-----------~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 158 (478)
+...+.... +.+.. .+..+ ..+.++++||+||+|..... .+..+
T Consensus 189 ~~~~~~~~~~~~~~~~~~I~i~T~~---~l~~~~~~~~~~~~liIiDE~H~~~~~------~~~~i-------------- 245 (510)
T 2oca_A 189 KKIGGGASKDDKYKNDAPVVVGTWQ---TVVKQPKEWFSQFGMMMNDECHLATGK------SISSI-------------- 245 (510)
T ss_dssp EECGGGCCTTGGGCTTCSEEEEEHH---HHTTSCGGGGGGEEEEEEETGGGCCHH------HHHHH--------------
T ss_pred EEEecCCccccccccCCcEEEEeHH---HHhhchhhhhhcCCEEEEECCcCCCcc------cHHHH--------------
Confidence 221111111 01111 22222 45778999999999964331 01111
Q ss_pred CCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChh--H---HHhhhCCCCeEEeCC-------ccccce
Q 011751 159 NNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--G---FSEYFGCAKAVHVQG-------RQFPVE 226 (478)
Q Consensus 159 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~--~---~~~~~~~~~~~~~~~-------~~~~~~ 226 (478)
+..+. ...++++||||+... . +..+++.. .+.++. ...+..
T Consensus 246 ----------------------l~~~~----~~~~~l~lSATp~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~ 298 (510)
T 2oca_A 246 ----------------------ISGLN----NCMFKFGLSGSLRDGKANIMQYVGMFGEI-FKPVTTSKLMEDGQVTELK 298 (510)
T ss_dssp ----------------------GGGCT----TCCEEEEEESCGGGCSSCHHHHHHHHCSE-ECCCCCC---------CCE
T ss_pred ----------------------HHhcc----cCcEEEEEEeCCCCCcccHHHhHHhhCCe-EEeeCHHHHhhCCcCCCce
Confidence 11111 456899999999222 2 22344321 111111 111111
Q ss_pred EE--ecCCCC--------cchHH------------HHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCC
Q 011751 227 IL--YTLYPE--------PDYLD------------ATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEA 284 (478)
Q Consensus 227 ~~--~~~~~~--------~~~~~------------~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~ 284 (478)
.. ....+. ..+.. ..+...+.......+.+++||++ .++++.+++.|.+.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~------- 370 (510)
T 2oca_A 299 INSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNE------- 370 (510)
T ss_dssp EEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTT-------
T ss_pred EEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHc-------
Confidence 11 000110 11111 01111111112223455677776 88888888888764
Q ss_pred CCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEec-cccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHH
Q 011751 285 SRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILAT-NIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKA 363 (478)
Q Consensus 285 ~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT-~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~ 363 (478)
+..+..+||+++.++|.++++.|++|..+||||| +++++|+|+|++++||. || .|.+..
T Consensus 371 --~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~--------~~----------~~~s~~ 430 (510)
T 2oca_A 371 --YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVL--------AH----------GVKSKI 430 (510)
T ss_dssp --CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEE--------SS----------CCCSCC
T ss_pred --CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEE--------eC----------CCCCHH
Confidence 3478899999999999999999999999999999 99999999999999998 65 366778
Q ss_pred HHHHhhcccCCCCCC-eEEEecC
Q 011751 364 QALQRSGRAGREGPG-KCFRLYP 385 (478)
Q Consensus 364 ~~~Qr~GRaGR~~~G-~~~~l~~ 385 (478)
+|.||+||+||.|+| .++.+++
T Consensus 431 ~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 431 IVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HHHHHHHHHHTTTCCCCCCEEEE
T ss_pred HHHHHHhcccccCCCCceEEEEE
Confidence 899999999999954 3555554
No 49
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.96 E-value=6e-29 Score=258.74 Aligned_cols=336 Identities=18% Similarity=0.138 Sum_probs=205.6
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEE
Q 011751 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRV 91 (478)
Q Consensus 12 ~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~v 91 (478)
.+.++++|...++.+.+|+ +..++||+|||..+.+.++..... +..++|+.|++.||.+.++.+..... ..+..+
T Consensus 81 G~~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~--g~~vlVltptreLA~qd~e~~~~l~~-~lgl~v 155 (844)
T 1tf5_A 81 GMFPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT--GKGVHVVTVNEYLASRDAEQMGKIFE-FLGLTV 155 (844)
T ss_dssp SCCCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT--SSCEEEEESSHHHHHHHHHHHHHHHH-HTTCCE
T ss_pred CCCCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHHHHh-hcCCeE
Confidence 4588999999999999999 889999999995555544422222 45689999999999998887655433 234555
Q ss_pred EEEEeec------------ccCChhhhH-HHHhh--------CcCcCCCcceEeecccccc---hhh-----------hH
Q 011751 92 GYSIRFD------------DRTSTSTRI-KEALL--------DPYLSRYSAIIVDEAHERT---VHT-----------DV 136 (478)
Q Consensus 92 g~~~~~~------------~~~~~~~~~-~~~l~--------~~~l~~~~~lIiDE~H~r~---~~~-----------~~ 136 (478)
+...... ....+..++ -.++. ...+.++.++|+||||.-- ..+ ..
T Consensus 156 ~~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~ 235 (844)
T 1tf5_A 156 GLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTK 235 (844)
T ss_dssp EECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCH
T ss_pred EEEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchh
Confidence 5432221 111222233 11111 2346889999999998521 111 01
Q ss_pred HHHHHHHHHHhhcccccCCCCCC-----------------------CCCCCc---------------------hhh----
Q 011751 137 LLGLLKKVQNARSKSADGHSNGN-----------------------NNNENS---------------------DMI---- 168 (478)
Q Consensus 137 ~l~~l~~~~~~~~~~~~~~~~~~-----------------------~~g~~~---------------------~~~---- 168 (478)
+...+..+...-.. ......++ -+++.. |++
T Consensus 236 ~~~~i~~iv~~l~~-~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg 314 (844)
T 1tf5_A 236 LYVQANAFVRTLKA-EKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDG 314 (844)
T ss_dssp HHHHHHHHHTTCCS-SSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETT
T ss_pred HHHHHHHHHHhCcc-cccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecC
Confidence 33334444432110 00000000 111110 000
Q ss_pred ----hccCCC-----CCCcc-------------------ccccccCC--CCCCceEEEEcCCC--ChhHHHhhhCCCCeE
Q 011751 169 ----LDRGND-----TNGIN-------------------TLKQCQGR--KFAPLKLIIMSASL--DARGFSEYFGCAKAV 216 (478)
Q Consensus 169 ----~~~~~~-----~~~~~-------------------~~~~~~~~--~~~~~~~i~lSAT~--~~~~~~~~~~~~~~~ 216 (478)
+|..-+ ..|.. .+..+... ...=.++.+||+|. ..++|.+.++- .++
T Consensus 315 ~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l-~vv 393 (844)
T 1tf5_A 315 QVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNM-QVV 393 (844)
T ss_dssp EEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCC-CEE
T ss_pred eeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCC-ceE
Confidence 000000 00000 00000000 00113678999999 44566666653 455
Q ss_pred EeCCccccce------EEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEE
Q 011751 217 HVQGRQFPVE------ILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVT 290 (478)
Q Consensus 217 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v 290 (478)
.++.. .|+. ..|. ...+.....+..+...+ ..+.++||||+|++.++.++..|.+. ++.+
T Consensus 394 ~IPtn-~p~~r~d~~d~v~~--~~~~K~~al~~~i~~~~--~~~~pvLVft~s~~~se~Ls~~L~~~---------gi~~ 459 (844)
T 1tf5_A 394 TIPTN-RPVVRDDRPDLIYR--TMEGKFKAVAEDVAQRY--MTGQPVLVGTVAVETSELISKLLKNK---------GIPH 459 (844)
T ss_dssp ECCCS-SCCCCEECCCEEES--SHHHHHHHHHHHHHHHH--HHTCCEEEEESCHHHHHHHHHHHHTT---------TCCC
T ss_pred EecCC-CCcccccCCcEEEe--CHHHHHHHHHHHHHHHH--hcCCcEEEEECCHHHHHHHHHHHHHC---------CCCE
Confidence 55532 2221 1121 12222333333333322 23678999999999999999999886 8889
Q ss_pred EEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccC--------CeEEEEeCCcccceeecCCCCcccceeeecCH
Q 011751 291 VPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIP--------GIKYVIDPGFVKARLYDPVKGMESLLVVPISK 362 (478)
Q Consensus 291 ~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip--------~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~ 362 (478)
..+||.+.+.+|..+...++.| .|+||||+++||+||+ ++.+||+ || .|.|.
T Consensus 460 ~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn--------~d----------~p~s~ 519 (844)
T 1tf5_A 460 QVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVG--------TE----------RHESR 519 (844)
T ss_dssp EEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEE--------SS----------CCSSH
T ss_pred EEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEE--------ec----------CCCCH
Confidence 9999999998998888888766 6999999999999999 8999999 77 68999
Q ss_pred HHHHHhhcccCCCC-CCeEEEecCHhh
Q 011751 363 AQALQRSGRAGREG-PGKCFRLYPENE 388 (478)
Q Consensus 363 ~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 388 (478)
..|.||+|||||.| +|.++.+++.++
T Consensus 520 r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 520 RIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp HHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred HHHHhhcCccccCCCCCeEEEEecHHH
Confidence 99999999999999 999998886543
No 50
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.96 E-value=1.3e-28 Score=257.87 Aligned_cols=299 Identities=18% Similarity=0.127 Sum_probs=168.0
Q ss_pred CCcHHHHHHHHHHHhc-----CCEEEEEcCCCCcHHhHHHHHHhhcCccC-------CCcEEEEecchHHHHHHHH-HHH
Q 011751 13 LPIASVEKRLVEEVRK-----NDILIIVGETGSGKTTQLPQFLFHAGFCR-------DGKLIGVTQPRRVAAVTVA-KRV 79 (478)
Q Consensus 13 ~~~~~~q~~~~~~l~~-----~~~~~i~apTGsGKT~~~~~~~~~~~~~~-------~~~~i~~~~p~~~l~~~~~-~~~ 79 (478)
+.++++|.+++..+.+ ++++++++|||||||.++..++....... .+.+++++.|+++|+.|.. +.+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 4688999999998875 57799999999999966544443322221 4568999999999999988 433
Q ss_pred HHHhCCcCCCEEEEEE--eecccCChhhhHHHH------hhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhccc
Q 011751 80 AEESGVELGQRVGYSI--RFDDRTSTSTRIKEA------LLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKS 151 (478)
Q Consensus 80 ~~~~~~~~~~~vg~~~--~~~~~~~~~~~~~~~------l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~ 151 (478)
.. ++.......+... ..+..+.+...+... .......++++||+||||......
T Consensus 257 ~~-~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~----------------- 318 (590)
T 3h1t_A 257 TP-FGDARHKIEGGKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD----------------- 318 (590)
T ss_dssp TT-TCSSEEECCC--CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC-----------------------
T ss_pred Hh-cchhhhhhhccCCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-----------------
Confidence 32 2211100000000 000011122222221 122234678999999999321100
Q ss_pred ccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCC---ChhHHHhhhCCCCeEEeC-------Cc
Q 011751 152 ADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL---DARGFSEYFGCAKAVHVQ-------GR 221 (478)
Q Consensus 152 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~---~~~~~~~~~~~~~~~~~~-------~~ 221 (478)
...+..++..+ +..++++||||+ +......+|+.. +.... +.
T Consensus 319 ----------------------~~~~~~il~~~-----~~~~~l~lTATP~~~~~~~~~~~f~~~-~~~~~~~~~i~~~~ 370 (590)
T 3h1t_A 319 ----------------------NSNWREILEYF-----EPAFQIGMTATPLREDNRDTYRYFGNP-IYTYSLRQGIDDGF 370 (590)
T ss_dssp -------------------------CHHHHHHS-----TTSEEEEEESSCSCTTTHHHHHHSCSC-SEEECHHHHHHHTS
T ss_pred ----------------------hHHHHHHHHhC-----CcceEEEeccccccccchhHHHHcCCc-eEecCHHHHhhCCc
Confidence 01112222222 346899999999 233456677643 22211 11
Q ss_pred cccceEEecCC--------------------------CCcch---------HHHHHHHHHHhh-hcCCCCCEEEEcCCHH
Q 011751 222 QFPVEILYTLY--------------------------PEPDY---------LDATLITIFQVH-LDEAPGDILVFLTGQE 265 (478)
Q Consensus 222 ~~~~~~~~~~~--------------------------~~~~~---------~~~~~~~~~~~~-~~~~~~~~LVF~~s~~ 265 (478)
..|........ ...+. .......+.... ...+.+++||||++++
T Consensus 371 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~ 450 (590)
T 3h1t_A 371 LAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQE 450 (590)
T ss_dssp SCCEEEEEEEETTCC-----------------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHH
T ss_pred cCCcEEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHH
Confidence 11111110000 00000 111112222222 2245689999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccE---EEEeccccccccccCCeEEEEeCCccc
Q 011751 266 EIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRK---VILATNIAETSVTIPGIKYVIDPGFVK 342 (478)
Q Consensus 266 ~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~---vlvaT~~~~~Gvdip~v~~VI~~g~~~ 342 (478)
+++.+++.|.+......... .-.+..+||+++. +|+.+++.|++|..+ |+|||+++++|+|+|++++||.
T Consensus 451 ~a~~l~~~L~~~~~~~~~~~-~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~----- 523 (590)
T 3h1t_A 451 HADEMRRALNNLNSDLSRKH-PDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVL----- 523 (590)
T ss_dssp HHHHHHHHHHHHTHHHHTTC-TTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEE-----
T ss_pred HHHHHHHHHHHhhhhhhccC-CCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEE-----
Confidence 99999999987633211111 2236778998764 799999999998765 8899999999999999999998
Q ss_pred ceeecCCCCcccceeeecCHHHHHHhhcccCCCCC
Q 011751 343 ARLYDPVKGMESLLVVPISKAQALQRSGRAGREGP 377 (478)
Q Consensus 343 ~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~ 377 (478)
|+ .|.|...|+||+||+||.++
T Consensus 524 ---~~----------~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 524 ---AR----------VVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp ---ES----------CCCCHHHHHHHHTTSCCCBG
T ss_pred ---Ee----------cCCChHHHHHHHhhhcccCc
Confidence 66 47889999999999999874
No 51
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.95 E-value=2.6e-27 Score=245.81 Aligned_cols=162 Identities=20% Similarity=0.170 Sum_probs=122.8
Q ss_pred eEEEEcCCC--ChhHHHhhhCCCCeEEeCCccccceEEecC----CCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHH
Q 011751 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILYTL----YPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE 266 (478)
Q Consensus 193 ~~i~lSAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~ 266 (478)
++.+||+|+ ..++|.+.++ ..++.++. ..|+...... ....+.....+..+...+ ..+.++||||+|++.
T Consensus 378 kl~GmTGTa~te~~ef~~iY~-l~vv~IPt-n~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~--~~gqpvLVft~sie~ 453 (853)
T 2fsf_A 378 KLAGMTGTADTEAFEFSSIYK-LDTVVVPT-NRPMIRKDLPDLVYMTEAEKIQAIIEDIKERT--AKGQPVLVGTISIEK 453 (853)
T ss_dssp EEEEEECTTCCCHHHHHHHHC-CEEEECCC-SSCCCCEECCCEEESSHHHHHHHHHHHHHHHH--TTTCCEEEEESSHHH
T ss_pred hhhcCCCCchhHHHHHHHHhC-CcEEEcCC-CCCceeecCCcEEEeCHHHHHHHHHHHHHHHh--cCCCCEEEEECcHHH
Confidence 688999999 5567777775 44666663 2333211111 111222222222222222 346789999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCC---------------
Q 011751 267 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPG--------------- 331 (478)
Q Consensus 267 ~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~--------------- 331 (478)
++.++..|.+. ++.+..+||...+.++..+.++|+.| .|+||||+|+||+||+.
T Consensus 454 se~Ls~~L~~~---------gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~ 522 (853)
T 2fsf_A 454 SELVSNELTKA---------GIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPT 522 (853)
T ss_dssp HHHHHHHHHHT---------TCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCC
T ss_pred HHHHHHHHHHC---------CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccch
Confidence 99999999987 88899999999888998899999988 69999999999999997
Q ss_pred -----------------e-----EEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEEecCHh
Q 011751 332 -----------------I-----KYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPEN 387 (478)
Q Consensus 332 -----------------v-----~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~ 387 (478)
| .+||+ || .|.|...|.||+||+||.| +|.+..+++.+
T Consensus 523 ~~~~~~~~~~~~~~~~~V~~~GGl~VI~--------te----------~pes~riy~qr~GRTGRqGd~G~s~~fls~e 583 (853)
T 2fsf_A 523 AEQIEKIKADWQVRHDAVLEAGGLHIIG--------TE----------RHESRRIDNQLRGRSGRQGDAGSSRFYLSME 583 (853)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTSEEEEE--------SS----------CCSSHHHHHHHHTTSSGGGCCEEEEEEEETT
T ss_pred hHHHHHHHHHhhhhhhHHHhcCCcEEEE--------cc----------CCCCHHHHHhhccccccCCCCeeEEEEeccc
Confidence 4 79999 66 6899999999999999999 99988888644
No 52
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=4.6e-28 Score=219.43 Aligned_cols=171 Identities=20% Similarity=0.337 Sum_probs=142.6
Q ss_pred HHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEecccc
Q 011751 244 TIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIA 323 (478)
Q Consensus 244 ~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~ 323 (478)
.+.++....+++++||||+++.+++.++..|.+. ++.+..+||+|++++|..+++.|++|..+|||||+++
T Consensus 21 ~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~ 91 (212)
T 3eaq_A 21 VLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL---------GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVA 91 (212)
T ss_dssp HHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHH---------TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTT
T ss_pred HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChh
Confidence 3344444445789999999999999999999887 8889999999999999999999999999999999999
Q ss_pred ccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEEecCHhhH-------------
Q 011751 324 ETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENEF------------- 389 (478)
Q Consensus 324 ~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~------------- 389 (478)
++|+|+|++++||+ || .|.+..+|+||+|||||.| +|.|+.++++.+.
T Consensus 92 ~~Gidi~~v~~Vi~--------~~----------~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~ 153 (212)
T 3eaq_A 92 ARGLDIPQVDLVVH--------YR----------LPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRR 153 (212)
T ss_dssp TCSSSCCCBSEEEE--------SS----------CCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSC
T ss_pred hcCCCCccCcEEEE--------CC----------CCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCc
Confidence 99999999999999 55 4889999999999999999 9999999987762
Q ss_pred -hcccCCCCCcccccCchHHHHHHHHcCCCCCCCc-----cCCCCCCHHHHHHHHHHH
Q 011751 390 -DKLEDSTKPEIKRCNLSNVILQLKALGVDDIIGF-----DFMEKPSRASIIKSLEQL 441 (478)
Q Consensus 390 -~~~~~~~~pei~~~~l~~~~l~~~~~~~~~~~~~-----~~~~~p~~~~l~~al~~L 441 (478)
..+.....+++.+..+..+++.++.++..+...| .|+++|..+.+..|+..|
T Consensus 154 ~~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~l 211 (212)
T 3eaq_A 154 FKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALL 211 (212)
T ss_dssp CEECCCCCHHHHHHHHHHHHHHHHTTSCHHHHTTTHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CeecCCCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 2244445556777778888888887765444334 567888999998888776
No 53
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.94 E-value=1.3e-25 Score=233.48 Aligned_cols=339 Identities=17% Similarity=0.110 Sum_probs=205.7
Q ss_pred hcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCE
Q 011751 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQR 90 (478)
Q Consensus 11 ~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~ 90 (478)
..+.++++|...+..+.+|+ +..++||+|||..+.+.++..... +..+.|+.|++.|+.+.++.+..... ..|..
T Consensus 108 lG~rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~--g~~v~VvTpTreLA~Qdae~m~~l~~-~lGLs 182 (922)
T 1nkt_A 108 LDQRPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA--GNGVHIVTVNDYLAKRDSEWMGRVHR-FLGLQ 182 (922)
T ss_dssp HSCCCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT--TSCEEEEESSHHHHHHHHHHHHHHHH-HTTCC
T ss_pred cCCCCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHHHHHHHHh-hcCCe
Confidence 34578999999999999998 999999999995554444322222 45689999999999988887655433 23455
Q ss_pred EEEEEeec------------ccCChhhhH-HHHhh--------CcCcCCCcceEeecccccchh---h-----------h
Q 011751 91 VGYSIRFD------------DRTSTSTRI-KEALL--------DPYLSRYSAIIVDEAHERTVH---T-----------D 135 (478)
Q Consensus 91 vg~~~~~~------------~~~~~~~~~-~~~l~--------~~~l~~~~~lIiDE~H~r~~~---~-----------~ 135 (478)
++...... ....+..++ -.++. ...+.++.++|+||||.--.+ + .
T Consensus 183 v~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~ 262 (922)
T 1nkt_A 183 VGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGAS 262 (922)
T ss_dssp EEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCH
T ss_pred EEEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCCcch
Confidence 55433221 111222222 11222 234678999999999842111 0 1
Q ss_pred HHHHHHHHHHHhhc---------ccccCC-----------------CCCCCCCC-----------------Cchhh----
Q 011751 136 VLLGLLKKVQNARS---------KSADGH-----------------SNGNNNNE-----------------NSDMI---- 168 (478)
Q Consensus 136 ~~l~~l~~~~~~~~---------~~~~~~-----------------~~~~~~g~-----------------~~~~~---- 168 (478)
.+...+..+...-. +..... .++..... ..|++
T Consensus 263 ~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg 342 (922)
T 1nkt_A 263 NWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDG 342 (922)
T ss_dssp HHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSS
T ss_pred hHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecC
Confidence 22233333333211 000000 11111100 00011
Q ss_pred ----hccCCCCC---------------------Cc---cccccccCC--CCCCceEEEEcCCC--ChhHHHhhhCCCCeE
Q 011751 169 ----LDRGNDTN---------------------GI---NTLKQCQGR--KFAPLKLIIMSASL--DARGFSEYFGCAKAV 216 (478)
Q Consensus 169 ----~~~~~~~~---------------------~~---~~~~~~~~~--~~~~~~~i~lSAT~--~~~~~~~~~~~~~~~ 216 (478)
+|..-+.. +. ..+..+... ...-.++.+||+|+ ..++|.+.++ ..++
T Consensus 343 ~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~-l~vv 421 (922)
T 1nkt_A 343 EVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYK-LGVV 421 (922)
T ss_dssp CEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHC-CEEE
T ss_pred ceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhC-CCeE
Confidence 01000000 00 001111100 00113789999999 4456777775 4466
Q ss_pred EeCCccccceEEec----CCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEE
Q 011751 217 HVQGRQFPVEILYT----LYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVP 292 (478)
Q Consensus 217 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~ 292 (478)
.++.. .|+..... .....+.....+..+...+ ..+.++||||+|++.++.++..|.+. ++.+..
T Consensus 422 ~IPtn-~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~--~~gqpvLVft~Sie~sE~Ls~~L~~~---------Gi~~~v 489 (922)
T 1nkt_A 422 SIPTN-MPMIREDQSDLIYKTEEAKYIAVVDDVAERY--AKGQPVLIGTTSVERSEYLSRQFTKR---------RIPHNV 489 (922)
T ss_dssp ECCCS-SCCCCEECCCEEESCHHHHHHHHHHHHHHHH--HTTCCEEEEESCHHHHHHHHHHHHHT---------TCCCEE
T ss_pred EeCCC-CCcccccCCcEEEeCHHHHHHHHHHHHHHHH--hcCCcEEEEECCHHHHHHHHHHHHHC---------CCCEEE
Confidence 66653 23211111 0112222233333333322 23668999999999999999999987 888999
Q ss_pred ccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCe----------------------------------------
Q 011751 293 IFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGI---------------------------------------- 332 (478)
Q Consensus 293 ~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v---------------------------------------- 332 (478)
+||.....++..+.+.|+.| .|+||||+++||+||+.+
T Consensus 490 Lnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (922)
T 1nkt_A 490 LNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEA 567 (922)
T ss_dssp ECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHT
T ss_pred ecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHH
Confidence 99999888888888999888 699999999999999964
Q ss_pred ------------EEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEEecCHh
Q 011751 333 ------------KYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPEN 387 (478)
Q Consensus 333 ------------~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~ 387 (478)
.+||+ || .|.|...|.||+||+||.| +|.+..+++.+
T Consensus 568 ~~~~~~V~~~GGlhVI~--------te----------~pes~riy~qr~GRTGRqGdpG~s~fflSle 617 (922)
T 1nkt_A 568 SKEAKEVIEAGGLYVLG--------TE----------RHESRRIDNQLRGRSGRQGDPGESRFYLSLG 617 (922)
T ss_dssp THHHHHHHHTTSEEEEE--------CS----------CCSSHHHHHHHHHTSSGGGCCEEEEEEEETT
T ss_pred HHhhhHHHhcCCcEEEe--------cc----------CCCCHHHHHHHhcccccCCCCeeEEEEechh
Confidence 69999 66 6899999999999999999 99988887543
No 54
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.93 E-value=4.6e-26 Score=249.24 Aligned_cols=118 Identities=17% Similarity=0.178 Sum_probs=100.7
Q ss_pred HHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCc--cEEEEe
Q 011751 242 LITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGF--RKVILA 319 (478)
Q Consensus 242 ~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~--~~vlva 319 (478)
...+..+....+++++||||+++..++.++..|.+.. ++.+..+||+|++.+|..+++.|++|. .+||||
T Consensus 491 ~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~--------g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLva 562 (968)
T 3dmq_A 491 VEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRERE--------GIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLC 562 (968)
T ss_dssp HHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTT--------CCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEEC
T ss_pred HHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHc--------CCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEe
Confidence 3344444444668899999999999999999998521 778999999999999999999999998 999999
Q ss_pred ccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCe--EEEecC
Q 011751 320 TNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGK--CFRLYP 385 (478)
Q Consensus 320 T~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~--~~~l~~ 385 (478)
|+++++|+|+|++++||+ || .|.+...|.||+||+||.| .|. +|.++.
T Consensus 563 T~v~~~GlDl~~~~~VI~--------~d----------~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~ 613 (968)
T 3dmq_A 563 SEIGSEGRNFQFASHMVM--------FD----------LPFNPDLLEQRIGRLDRIGQAHDIQIHVPYL 613 (968)
T ss_dssp SCCTTCSSCCTTCCEEEC--------SS----------CCSSHHHHHHHHHTTSCSSSCSCCEEEEEEE
T ss_pred cchhhcCCCcccCcEEEE--------ec----------CCCCHHHHHHHhhccccCCCCceEEEEEecC
Confidence 999999999999999999 77 4788999999999999999 553 455453
No 55
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=6.6e-27 Score=221.62 Aligned_cols=190 Identities=20% Similarity=0.310 Sum_probs=149.1
Q ss_pred eEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhh
Q 011751 226 EILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRV 305 (478)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i 305 (478)
+..+...+..+..+. +.++.....++++||||+++++++.++..|.+. ++.+..+||+|++.+|..+
T Consensus 4 ~~~~i~~~~~~K~~~----L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~---------g~~~~~lhg~l~~~~r~~~ 70 (300)
T 3i32_A 4 EEEAVPAPVRGRLEV----LSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL---------GHPAQALHGDMSQGERERV 70 (300)
T ss_dssp EEEEEECCSSSHHHH----HHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTT---------TCCEEEECSCCCTHHHHHH
T ss_pred EEEEEECCHHHHHHH----HHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHHHH
Confidence 344444444444333 333333334889999999999999999999775 7889999999999999999
Q ss_pred cCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEEec
Q 011751 306 FAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLY 384 (478)
Q Consensus 306 ~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~ 384 (478)
++.|++|..+|||||+++++|+|+|++++||+ || .|.+..+|+||+|||||.| +|.|+.++
T Consensus 71 ~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~--------~d----------~p~s~~~y~Qr~GRagR~g~~G~~i~l~ 132 (300)
T 3i32_A 71 MGAFRQGEVRVLVATDVAARGLDIPQVDLVVH--------YR----------MPDRAEAYQHRSGRTGRAGRGGRVVLLY 132 (300)
T ss_dssp HHHHHHTSCCEEEECSTTTCSTTCCCCSEEEE--------SS----------CCSSTTHHHHHHTCCC-----CEEEEEE
T ss_pred HHHhhcCCceEEEEechhhcCccccceeEEEE--------cC----------CCCCHHHHHHHccCcCcCCCCceEEEEe
Confidence 99999999999999999999999999999999 55 4788999999999999998 99999999
Q ss_pred CHhh--------------HhcccCCCCCcccccCchHHHHHHHHcCCCCCCCc-----cCCCCCCHHHHHHHHHHHHHCC
Q 011751 385 PENE--------------FDKLEDSTKPEIKRCNLSNVILQLKALGVDDIIGF-----DFMEKPSRASIIKSLEQLFLLG 445 (478)
Q Consensus 385 ~~~~--------------~~~~~~~~~pei~~~~l~~~~l~~~~~~~~~~~~~-----~~~~~p~~~~l~~al~~L~~~g 445 (478)
++.+ +..+.....+++.+..+..++++++.++..+...| .|+++|+.+.+..|+..|....
T Consensus 133 ~~~e~~~~~~ie~~~~~~~~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~f~~~~~~l~~~~~~e~laaal~~l~~~~ 212 (300)
T 3i32_A 133 GPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLLGGA 212 (300)
T ss_dssp CSSTHHHHHHHHHHHTCCCEECCCCCHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHTCHHHHHHHHHHHHTCC
T ss_pred ChHHHHHHHHHHHHhCCcceEeCCCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCcHHHHHHHHHHHhcCC
Confidence 8765 22345555667888888888888887655444444 5677899999999999996554
Q ss_pred C
Q 011751 446 A 446 (478)
Q Consensus 446 ~ 446 (478)
.
T Consensus 213 ~ 213 (300)
T 3i32_A 213 P 213 (300)
T ss_dssp C
T ss_pred c
Confidence 4
No 56
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.90 E-value=3e-23 Score=191.14 Aligned_cols=172 Identities=42% Similarity=0.624 Sum_probs=141.5
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCC---CcEEEEecchHHHHHHHHHHHH
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD---GKLIGVTQPRRVAAVTVAKRVA 80 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~---~~~i~~~~p~~~l~~~~~~~~~ 80 (478)
.++.+.+..+|++++|+++++.+.+|++++++||||||||+++..++.......+ +..++++.|+++++.++.+++.
T Consensus 51 ~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~ 130 (235)
T 3llm_A 51 QAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVA 130 (235)
T ss_dssp HHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHH
Confidence 3556778889999999999999999999999999999999998888766543222 3478999999999999999999
Q ss_pred HHhCCcCCCEEEEEEeecccC---------ChhhhHHHHhhCcCcCCCcceEeecccccchhhhHHHHHHHHHHHhhccc
Q 011751 81 EESGVELGQRVGYSIRFDDRT---------STSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKS 151 (478)
Q Consensus 81 ~~~~~~~~~~vg~~~~~~~~~---------~~~~~~~~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~~~~~~~ 151 (478)
..++...+..+|+..+.+... .+..++...+.. .+.+++++|+||+|+++.+.+..+..++.+...+
T Consensus 131 ~~~~~~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~--- 206 (235)
T 3llm_A 131 FERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEA-GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY--- 206 (235)
T ss_dssp HTTTCCTTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH-CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC---
T ss_pred HHhccccCceEEEeechhhccCCCCCeEEEECHHHHHHHHHh-hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC---
Confidence 988888888899876554332 233444444433 5899999999999999999999988888887765
Q ss_pred ccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCChhHHHhhhCCCCeEE
Q 011751 152 ADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVH 217 (478)
Q Consensus 152 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~ 217 (478)
++.|+++||||++.+.+++||++.+++.
T Consensus 207 --------------------------------------~~~~~il~SAT~~~~~~~~~~~~~pvi~ 234 (235)
T 3llm_A 207 --------------------------------------PEVRIVLMSATIDTSMFCEYFFNCPIIE 234 (235)
T ss_dssp --------------------------------------TTSEEEEEECSSCCHHHHHHTTSCCCEE
T ss_pred --------------------------------------CCCeEEEEecCCCHHHHHHHcCCCCEEe
Confidence 6789999999998888999999887765
No 57
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.90 E-value=2.6e-22 Score=211.05 Aligned_cols=112 Identities=17% Similarity=0.196 Sum_probs=100.8
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCe
Q 011751 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGI 332 (478)
Q Consensus 253 ~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v 332 (478)
.+.++||||+|+..++.++..|.+. ++.+..+||++++.+|..+++.|++|..+|+|||+++++|+|+|++
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~---------gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v 508 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH---------GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEV 508 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTE
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc---------CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCC
Confidence 3679999999999999999999886 7788899999999999999999999999999999999999999999
Q ss_pred EEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCCCCeEEEecCH
Q 011751 333 KYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPE 386 (478)
Q Consensus 333 ~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~ 386 (478)
++||+ ||.... ..|.|..+|+||+|||||.++|.|+.++++
T Consensus 509 ~lVI~--------~d~d~~-----G~p~s~~~~iQr~GRagR~~~G~~i~~~~~ 549 (664)
T 1c4o_A 509 SLVAI--------LDADKE-----GFLRSERSLIQTIGRAARNARGEVWLYADR 549 (664)
T ss_dssp EEEEE--------TTTTSC-----SGGGSHHHHHHHHGGGTTSTTCEEEEECSS
T ss_pred CEEEE--------eCCccc-----CCCCCHHHHHHHHCccCcCCCCEEEEEEcC
Confidence 99999 553211 137899999999999999999999999964
No 58
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.90 E-value=1.4e-23 Score=215.41 Aligned_cols=110 Identities=14% Similarity=0.169 Sum_probs=90.7
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCC-ccE-EEEeccccccccccC
Q 011751 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG-FRK-VILATNIAETSVTIP 330 (478)
Q Consensus 253 ~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g-~~~-vlvaT~~~~~Gvdip 330 (478)
++.++||||++...++.++..|.+.. ++.+..+||+++.++|.++++.|++| ..+ +|+||+++++|+|+|
T Consensus 340 ~~~k~lvF~~~~~~~~~l~~~l~~~~--------~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~ 411 (500)
T 1z63_A 340 EGDKIAIFTQFVDMGKIIRNIIEKEL--------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLT 411 (500)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHH--------TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCT
T ss_pred cCCcEEEEEehHHHHHHHHHHHHHhh--------CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchh
Confidence 57899999999999999999998743 56677889999999999999999988 454 799999999999999
Q ss_pred CeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC---CCeEEEecCHhh
Q 011751 331 GIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPENE 388 (478)
Q Consensus 331 ~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~ 388 (478)
++++||. || .|.+...+.||+||++|.| +..+|.++.+..
T Consensus 412 ~~~~vi~--------~d----------~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~t 454 (500)
T 1z63_A 412 SANRVIH--------FD----------RWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 454 (500)
T ss_dssp TCSEEEE--------SS----------CCSCC---CHHHHTTTTTTTTSCEEEEEEEETTS
T ss_pred hCCEEEE--------eC----------CCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCC
Confidence 9999998 77 4677888999999999999 334677776543
No 59
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.89 E-value=9.6e-23 Score=221.52 Aligned_cols=306 Identities=11% Similarity=0.021 Sum_probs=183.1
Q ss_pred CCcHHHHHHHHHHHhc--------------CCEEEEEcCCCCcHHhHHHHHHhhcCcc-CCCcEEEEecchHHHHHHHHH
Q 011751 13 LPIASVEKRLVEEVRK--------------NDILIIVGETGSGKTTQLPQFLFHAGFC-RDGKLIGVTQPRRVAAVTVAK 77 (478)
Q Consensus 13 ~~~~~~q~~~~~~l~~--------------~~~~~i~apTGsGKT~~~~~~~~~~~~~-~~~~~i~~~~p~~~l~~~~~~ 77 (478)
..++++|.++++.+.+ +++.+++++||||||..+ ..+...... ....++++++|++.|+.|..+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHH
Confidence 3478999999998765 368999999999999555 223222221 223589999999999999988
Q ss_pred HHHHHhCCcCCCEEEE--------EEeecccCChhhhHHHHhhC----cCcCCCcceEeecccccchhhhHHHHHHHHHH
Q 011751 78 RVAEESGVELGQRVGY--------SIRFDDRTSTSTRIKEALLD----PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQ 145 (478)
Q Consensus 78 ~~~~~~~~~~~~~vg~--------~~~~~~~~~~~~~~~~~l~~----~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~~ 145 (478)
.+.......+...... .......+++..++...+.. +.+....+||+||||.. .... ..+.+.
T Consensus 349 ~f~~f~~~~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs-~~~~----~~~~I~ 423 (1038)
T 2w00_A 349 EYQRFSPDSVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRS-QFGE----AQKNLK 423 (1038)
T ss_dssp HHHTTSTTCSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTT-HHHH----HHHHHH
T ss_pred HHHHhcccccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchh-cchH----HHHHHH
Confidence 7765433211100000 00000112222333332221 23567899999999952 2211 112221
Q ss_pred HhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCC-h------hHHHhhhCCCCeEEe
Q 011751 146 NARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLD-A------RGFSEYFGCAKAVHV 218 (478)
Q Consensus 146 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~-~------~~~~~~~~~~~~~~~ 218 (478)
... ++.++++||||+. . ....++||.. +...
T Consensus 424 ~~~-----------------------------------------p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~-i~~Y 461 (1038)
T 2w00_A 424 KKF-----------------------------------------KRYYQFGFTGTPIFPENALGSETTASVFGRE-LHSY 461 (1038)
T ss_dssp HHC-----------------------------------------SSEEEEEEESSCCCSTTCTTSCCHHHHHCSE-EEEE
T ss_pred HhC-----------------------------------------CcccEEEEeCCccccccchhhhHHHHHhCCe-eEee
Confidence 111 5578999999992 2 2455677642 2221
Q ss_pred -------CCccccceEEecCCC-------------------------CcchHHHHHHHHHHhh-hc-------CCCCCEE
Q 011751 219 -------QGRQFPVEILYTLYP-------------------------EPDYLDATLITIFQVH-LD-------EAPGDIL 258 (478)
Q Consensus 219 -------~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~-~~-------~~~~~~L 258 (478)
++...|+.+.|.... .++........+.... .. ..++++|
T Consensus 462 ~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kam 541 (1038)
T 2w00_A 462 VITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAM 541 (1038)
T ss_dssp CHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEE
T ss_pred cHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEE
Confidence 122334443333210 0111122222222211 11 1346899
Q ss_pred EEcCCHHHHHHHHHHHHHHHhcC---CCCCCCeEE-EEccCC----------C----------CH---------------
Q 011751 259 VFLTGQEEIESVERLVQERLLQL---PEASRKLVT-VPIFSS----------L----------PS--------------- 299 (478)
Q Consensus 259 VF~~s~~~~~~l~~~l~~~~~~~---~~~~~~~~v-~~~h~~----------l----------~~--------------- 299 (478)
|||+|+..|..+++.|.+..... .....++.+ ..+|++ + ++
T Consensus 542 Vf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~ 621 (1038)
T 2w00_A 542 LAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNS 621 (1038)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHH
Confidence 99999999999999998764211 011112333 345542 2 22
Q ss_pred --------------HHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHH
Q 011751 300 --------------EQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQA 365 (478)
Q Consensus 300 --------------~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~ 365 (478)
.+|..+.+.|++|.++|||+|+++.+|+|+|.+.+++ +| .|.+...|
T Consensus 622 ~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l~tly---------lD----------kpl~~~~l 682 (1038)
T 2w00_A 622 HFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTLNTLF---------VD----------KNLRYHGL 682 (1038)
T ss_dssp HHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTEEEEE---------EE----------SCCCHHHH
T ss_pred HhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccccEEE---------Ec----------cCCCccce
Confidence 1477888999999999999999999999999996554 66 47888999
Q ss_pred HHhhcccCCCCC-----CeEEEecC
Q 011751 366 LQRSGRAGREGP-----GKCFRLYP 385 (478)
Q Consensus 366 ~Qr~GRaGR~~~-----G~~~~l~~ 385 (478)
+||+||++|.++ |.++.+..
T Consensus 683 iQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 683 MQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp HHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred eehhhccCcCCCCCCCcEEEEEccc
Confidence 999999999884 66666664
No 60
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.89 E-value=2.1e-22 Score=205.04 Aligned_cols=165 Identities=19% Similarity=0.230 Sum_probs=119.9
Q ss_pred ceEEEEcCCC--ChhHHHhhhCCCCeEEeCCccccceEEe---cCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHH
Q 011751 192 LKLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILY---TLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE 266 (478)
Q Consensus 192 ~~~i~lSAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~ 266 (478)
.++.+||+|+ ..++|.+.++ ..++.++...-...... ......+.....+..+...+ ..+.++||||+|++.
T Consensus 410 ~kL~GMTGTa~te~~Ef~~iY~-l~vv~IPtnkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~--~~gqpVLVFt~S~e~ 486 (822)
T 3jux_A 410 EKLAGMTGTAKTEESEFVQVYG-MEVVVIPTHKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRY--KKGQPVLVGTTSIEK 486 (822)
T ss_dssp SEEEEEESSCGGGHHHHHHHSC-CCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHH--HHTCCEEEEESSHHH
T ss_pred hHHeEECCCCchHHHHHHHHhC-CeEEEECCCCCcceeecCcEEEecHHHHHHHHHHHHHHHh--hCCCCEEEEECCHHH
Confidence 3689999999 4456777665 44666654321111111 00112223333333333332 236789999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccC--------CeEEEEeC
Q 011751 267 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIP--------GIKYVIDP 338 (478)
Q Consensus 267 ~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip--------~v~~VI~~ 338 (478)
++.+++.|.+. ++.+..+||+..+.++..+...++.| .|+||||+++||+||+ +..+||+
T Consensus 487 sE~Ls~~L~~~---------Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVIn- 554 (822)
T 3jux_A 487 SELLSSMLKKK---------GIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIG- 554 (822)
T ss_dssp HHHHHHHHHTT---------TCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEE-
T ss_pred HHHHHHHHHHC---------CCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEe-
Confidence 99999999876 88889999997666666666677666 6999999999999998 6679999
Q ss_pred CcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEEecCHhh
Q 011751 339 GFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENE 388 (478)
Q Consensus 339 g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 388 (478)
|| .|.|...|.||+|||||.| +|.++.+++.++
T Consensus 555 -------te----------~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 555 -------TE----------RHESRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp -------SS----------CCSSHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred -------cC----------CCCCHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 66 6899999999999999999 999988886543
No 61
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.88 E-value=8.3e-23 Score=179.28 Aligned_cols=143 Identities=17% Similarity=0.257 Sum_probs=111.1
Q ss_pred cceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHH
Q 011751 224 PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQM 303 (478)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~ 303 (478)
.+..+|...+..+ .....+..+....+.+++||||++++.++.++..|.+. ++.+..+||+|++.+|.
T Consensus 7 ~i~q~~~~~~~~~---~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~R~ 74 (175)
T 2rb4_A 7 NIRQYYVLCEHRK---DKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQD---------GHQVSLLSGELTVEQRA 74 (175)
T ss_dssp CEEEEEEECSSHH---HHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTT---------TCCEEEECSSCCHHHHH
T ss_pred CceEEEEEcCChH---hHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHH
Confidence 3445555444432 23344455555556789999999999999999999875 78899999999999999
Q ss_pred hhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEE
Q 011751 304 RVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFR 382 (478)
Q Consensus 304 ~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~ 382 (478)
.+++.|++|..+|||||+++++|+|+|++++||+ ||+..... ...+..+|+||+|||||.| +|.|+.
T Consensus 75 ~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~--------~d~p~~~~----~~~~~~~~~qr~GR~gR~g~~g~~~~ 142 (175)
T 2rb4_A 75 SIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVN--------FDLPVKQG----EEPDYETYLHRIGRTGRFGKKGLAFN 142 (175)
T ss_dssp HHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEE--------SSCCC--C----CSCCHHHHHHHHCBC----CCEEEEE
T ss_pred HHHHHHHcCCCeEEEEecchhcCCCcccCCEEEE--------eCCCCCcc----ccCCHHHHHHHhcccccCCCCceEEE
Confidence 9999999999999999999999999999999999 66311100 1188999999999999998 899999
Q ss_pred ecCHhhHh
Q 011751 383 LYPENEFD 390 (478)
Q Consensus 383 l~~~~~~~ 390 (478)
++++.+..
T Consensus 143 ~~~~~~~~ 150 (175)
T 2rb4_A 143 MIEVDELP 150 (175)
T ss_dssp EECGGGHH
T ss_pred EEccchHH
Confidence 99877543
No 62
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.88 E-value=7.9e-23 Score=177.17 Aligned_cols=136 Identities=23% Similarity=0.375 Sum_probs=113.7
Q ss_pred ceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHh
Q 011751 225 VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMR 304 (478)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~ 304 (478)
+...+...+..+..... ..+....+++++||||++++.++.+++.|.+. ++.+..+||+|++.+|..
T Consensus 10 i~~~~~~~~~~~K~~~L----~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~hg~~~~~~r~~ 76 (163)
T 2hjv_A 10 IEHAVIQVREENKFSLL----KDVLMTENPDSCIIFCRTKEHVNQLTDELDDL---------GYPCDKIHGGMIQEDRFD 76 (163)
T ss_dssp EEEEEEECCGGGHHHHH----HHHHHHHCCSSEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHH
T ss_pred ceEEEEECChHHHHHHH----HHHHHhcCCCcEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHHH
Confidence 44555554444433332 23333345789999999999999999999886 788999999999999999
Q ss_pred hcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEEe
Q 011751 305 VFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRL 383 (478)
Q Consensus 305 i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l 383 (478)
+++.|++|..+|||||+++++|+|+|++++||+ || .|.+..+|.||+||+||.| +|.|+.+
T Consensus 77 ~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~--------~~----------~p~~~~~~~qr~GR~~R~g~~g~~~~~ 138 (163)
T 2hjv_A 77 VMNEFKRGEYRYLVATDVAARGIDIENISLVIN--------YD----------LPLEKESYVHRTGRTGRAGNKGKAISF 138 (163)
T ss_dssp HHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEE--------SS----------CCSSHHHHHHHTTTSSCTTCCEEEEEE
T ss_pred HHHHHHcCCCeEEEECChhhcCCchhcCCEEEE--------eC----------CCCCHHHHHHhccccCcCCCCceEEEE
Confidence 999999999999999999999999999999999 66 4889999999999999998 9999999
Q ss_pred cCHhhHhc
Q 011751 384 YPENEFDK 391 (478)
Q Consensus 384 ~~~~~~~~ 391 (478)
+++.+...
T Consensus 139 ~~~~~~~~ 146 (163)
T 2hjv_A 139 VTAFEKRF 146 (163)
T ss_dssp ECGGGHHH
T ss_pred ecHHHHHH
Confidence 98765443
No 63
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.87 E-value=3.6e-21 Score=202.42 Aligned_cols=109 Identities=13% Similarity=0.246 Sum_probs=97.2
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCcc---EEEEeccccccccc
Q 011751 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFR---KVILATNIAETSVT 328 (478)
Q Consensus 252 ~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~---~vlvaT~~~~~Gvd 328 (478)
.++.++|||++....++.++..|... ++.+..+||+++.++|..+++.|.+|.. .+|++|++++.|+|
T Consensus 414 ~~~~k~lIFs~~~~~~~~l~~~l~~~---------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Gln 484 (644)
T 1z3i_X 414 TTSDKVVLVSNYTQTLDLFEKLCRNR---------RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLN 484 (644)
T ss_dssp HCCCEEEEEESCHHHHHHHHHHHHHH---------TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCC
T ss_pred cCCCEEEEEEccHHHHHHHHHHHHHC---------CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcc
Confidence 34779999999999999999999887 8889999999999999999999998865 48999999999999
Q ss_pred cCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC---CCeEEEecCHh
Q 011751 329 IPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPEN 387 (478)
Q Consensus 329 ip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~ 387 (478)
++++++||+ || .|.+++.+.|++||++|.| +..+|+++...
T Consensus 485 l~~a~~Vi~--------~d----------~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 485 LIGANRLVM--------FD----------PDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp CTTEEEEEE--------CS----------CCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred cccCCEEEE--------EC----------CCCCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 999999999 88 4788999999999999999 34577787654
No 64
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.87 E-value=1.9e-22 Score=176.17 Aligned_cols=133 Identities=18% Similarity=0.361 Sum_probs=112.6
Q ss_pred cceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHH
Q 011751 224 PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQM 303 (478)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~ 303 (478)
.+..+|...+..+... .+..+....+.+++||||+++..++.++..|.+. ++.+..+||+|++.+|.
T Consensus 5 ~i~q~~~~~~~~~K~~----~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~hg~~~~~~r~ 71 (172)
T 1t5i_A 5 GLQQYYVKLKDNEKNR----KLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ---------NFPAIAIHRGMPQEERL 71 (172)
T ss_dssp CCEEEEEECCGGGHHH----HHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHH
T ss_pred CeEEEEEECChHHHHH----HHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhc---------CCCEEEEECCCCHHHHH
Confidence 3445555544444333 3333444446789999999999999999999886 78899999999999999
Q ss_pred hhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEE
Q 011751 304 RVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFR 382 (478)
Q Consensus 304 ~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~ 382 (478)
.+++.|++|..+|||||+++++|+|+|++++||+ || .|.+..+|.||+|||||.| +|.++.
T Consensus 72 ~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~--------~d----------~p~~~~~~~qr~GR~~R~g~~g~~~~ 133 (172)
T 1t5i_A 72 SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN--------YD----------MPEDSDTYLHRVARAGRFGTKGLAIT 133 (172)
T ss_dssp HHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEE--------SS----------CCSSHHHHHHHHHHHTGGGCCCEEEE
T ss_pred HHHHHHHCCCCcEEEECCchhcCcchhhCCEEEE--------EC----------CCCCHHHHHHHhcccccCCCCcEEEE
Confidence 9999999999999999999999999999999999 76 5889999999999999999 899999
Q ss_pred ecCHh
Q 011751 383 LYPEN 387 (478)
Q Consensus 383 l~~~~ 387 (478)
++++.
T Consensus 134 ~~~~~ 138 (172)
T 1t5i_A 134 FVSDE 138 (172)
T ss_dssp EECSH
T ss_pred EEcCh
Confidence 99754
No 65
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.87 E-value=1.1e-22 Score=176.79 Aligned_cols=116 Identities=19% Similarity=0.447 Sum_probs=101.0
Q ss_pred hhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEecccccccc
Q 011751 248 VHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSV 327 (478)
Q Consensus 248 ~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gv 327 (478)
+....+.+++||||++++.++.++..|.+. ++.+..+||++++.+|..+++.|++|..+|||||+++++|+
T Consensus 24 ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~ 94 (165)
T 1fuk_A 24 LYDSISVTQAVIFCNTRRKVEELTTKLRND---------KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGI 94 (165)
T ss_dssp HHHHTTCSCEEEEESSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTC
T ss_pred HHHhCCCCCEEEEECCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCC
Confidence 333345789999999999999999999875 78899999999999999999999999999999999999999
Q ss_pred ccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEEecCHhhHh
Q 011751 328 TIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENEFD 390 (478)
Q Consensus 328 dip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~~ 390 (478)
|+|++++||+ || .|.+..+|.||+|||||.| +|.|+.++++++..
T Consensus 95 d~~~~~~Vi~--------~~----------~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~ 140 (165)
T 1fuk_A 95 DVQQVSLVIN--------YD----------LPANKENYIHRIGRGGRFGRKGVAINFVTNEDVG 140 (165)
T ss_dssp CCCSCSEEEE--------SS----------CCSSGGGGGGSSCSCC-----CEEEEEEETTTHH
T ss_pred CcccCCEEEE--------eC----------CCCCHHHHHHHhcccccCCCCceEEEEEcchHHH
Confidence 9999999999 66 4788999999999999998 89999999766543
No 66
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.86 E-value=3.5e-22 Score=176.52 Aligned_cols=137 Identities=20% Similarity=0.304 Sum_probs=99.5
Q ss_pred cceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHH
Q 011751 224 PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQM 303 (478)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~ 303 (478)
.+...+...+..+........+.. ..+++++||||+++..++.++..|.+. ++.+..+||++++.+|.
T Consensus 19 ~i~q~~~~v~~~~K~~~L~~ll~~---~~~~~k~lVF~~~~~~~~~l~~~L~~~---------g~~~~~lhg~~~~~~r~ 86 (185)
T 2jgn_A 19 NITQKVVWVEESDKRSFLLDLLNA---TGKDSLTLVFVETKKGADSLEDFLYHE---------GYACTSIHGDRSQRDRE 86 (185)
T ss_dssp TEEEEEEECCGGGHHHHHHHHHHH---C-CCSCEEEEESCHHHHHHHHHHHHHT---------TCCEEEEC--------C
T ss_pred CceEEEEEeCcHHHHHHHHHHHHh---cCCCCeEEEEECCHHHHHHHHHHHHHc---------CCceEEEeCCCCHHHHH
Confidence 344555544444444333322222 225788999999999999999999875 78899999999999999
Q ss_pred hhcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEE
Q 011751 304 RVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFR 382 (478)
Q Consensus 304 ~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~ 382 (478)
.+++.|++|..+|||||+++++|+|+|++++||+ || .|.+..+|.||+|||||.| +|.|+.
T Consensus 87 ~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~--------~d----------~p~s~~~~~Qr~GR~~R~g~~g~~~~ 148 (185)
T 2jgn_A 87 EALHQFRSGKSPILVATAVAARGLDISNVKHVIN--------FD----------LPSDIEEYVHRIGRTGRVGNLGLATS 148 (185)
T ss_dssp HHHHHHHHTSSSEEEEEC------CCCSBSEEEE--------SS----------CCSSHHHHHHHHTTBCCTTSCEEEEE
T ss_pred HHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEE--------eC----------CCCCHHHHHHHccccCCCCCCcEEEE
Confidence 9999999999999999999999999999999999 77 5889999999999999999 999999
Q ss_pred ecCHhhHh
Q 011751 383 LYPENEFD 390 (478)
Q Consensus 383 l~~~~~~~ 390 (478)
++++.+..
T Consensus 149 ~~~~~~~~ 156 (185)
T 2jgn_A 149 FFNERNIN 156 (185)
T ss_dssp EECGGGGG
T ss_pred EEchhhHH
Confidence 99876543
No 67
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.86 E-value=4.7e-22 Score=176.48 Aligned_cols=131 Identities=20% Similarity=0.383 Sum_probs=108.6
Q ss_pred ceEEecCCCCcchHHHHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHh
Q 011751 225 VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMR 304 (478)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~ 304 (478)
+...+...+..+.. ..+..+... .++++||||++++.++.++..|.+. ++.+..+||++++.+|..
T Consensus 30 i~q~~~~~~~~~K~----~~L~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~---------g~~~~~lhg~~~~~~R~~ 95 (191)
T 2p6n_A 30 VIQEVEYVKEEAKM----VYLLECLQK-TPPPVLIFAEKKADVDAIHEYLLLK---------GVEAVAIHGGKDQEERTK 95 (191)
T ss_dssp SEEEEEECCGGGHH----HHHHHHHTT-SCSCEEEECSCHHHHHHHHHHHHHH---------TCCEEEECTTSCHHHHHH
T ss_pred ceEEEEEcChHHHH----HHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHHH
Confidence 44444444443333 333333333 3568999999999999999999887 788999999999999999
Q ss_pred hcCcCCCCccEEEEeccccccccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEEe
Q 011751 305 VFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRL 383 (478)
Q Consensus 305 i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l 383 (478)
+++.|++|..+|||||+++++|+|+|++++||+ || .|.+..+|.||+|||||.| +|.++.+
T Consensus 96 ~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~--------~d----------~p~~~~~~~qr~GR~gR~g~~g~~i~l 157 (191)
T 2p6n_A 96 AIEAFREGKKDVLVATDVASKGLDFPAIQHVIN--------YD----------MPEEIENYVHRIGRTGCSGNTGIATTF 157 (191)
T ss_dssp HHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEE--------SS----------CCSSHHHHHHHHTTSCC---CCEEEEE
T ss_pred HHHHHhcCCCEEEEEcCchhcCCCcccCCEEEE--------eC----------CCCCHHHHHHHhCccccCCCCcEEEEE
Confidence 999999999999999999999999999999999 77 5889999999999999999 8999999
Q ss_pred cCHh
Q 011751 384 YPEN 387 (478)
Q Consensus 384 ~~~~ 387 (478)
+++.
T Consensus 158 ~~~~ 161 (191)
T 2p6n_A 158 INKA 161 (191)
T ss_dssp ECTT
T ss_pred EcCc
Confidence 9754
No 68
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.74 E-value=1.1e-22 Score=177.57 Aligned_cols=120 Identities=19% Similarity=0.354 Sum_probs=106.7
Q ss_pred HHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccc
Q 011751 245 IFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAE 324 (478)
Q Consensus 245 ~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~ 324 (478)
+..+....+++++||||+++..++.++..|.+. ++.+..+||++++.+|..+++.|++|..+|||||++++
T Consensus 21 l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 91 (170)
T 2yjt_D 21 LVHLLKQPEATRSIVFVRKRERVHELANWLREA---------GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAA 91 (170)
Confidence 333444445788999999999999999999876 78899999999999999999999999999999999999
Q ss_pred cccccCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-CCeEEEecCHhhHhc
Q 011751 325 TSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENEFDK 391 (478)
Q Consensus 325 ~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~~~ 391 (478)
+|+|+|++++||+ || .|.+..+|+||+|||||.| .|.++.+++..+...
T Consensus 92 ~Gid~~~~~~Vi~--------~~----------~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~ 141 (170)
T 2yjt_D 92 RGIDIPDVSHVFN--------FD----------MPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 141 (170)
Confidence 9999999999999 66 5788999999999999999 999999998765443
No 69
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.84 E-value=4.9e-21 Score=206.42 Aligned_cols=112 Identities=15% Similarity=0.179 Sum_probs=98.1
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCcc---EEEEeccccccccc
Q 011751 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFR---KVILATNIAETSVT 328 (478)
Q Consensus 252 ~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~---~vlvaT~~~~~Gvd 328 (478)
..+.++|||+.....++.+...|... ++.+..+||+++..+|..+++.|.++.. .+|+||.+++.|+|
T Consensus 570 ~~g~kvLIFsq~~~~ld~L~~~L~~~---------g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlN 640 (800)
T 3mwy_W 570 KDGHRVLIFSQMVRMLDILGDYLSIK---------GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGIN 640 (800)
T ss_dssp TTTCCEEEEESCHHHHHHHHHHHHHH---------TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCC
T ss_pred hCCCeEEEEechHHHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCC
Confidence 34679999999999999999999887 8888999999999999999999998544 58999999999999
Q ss_pred cCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC---CCeEEEecCHhhHh
Q 011751 329 IPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPENEFD 390 (478)
Q Consensus 329 ip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~~ 390 (478)
++++++||. || .|-++..+.||.||++|.| +..+|+|+++...+
T Consensus 641 L~~a~~VI~--------~D----------~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiE 687 (800)
T 3mwy_W 641 LMTADTVVI--------FD----------SDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVE 687 (800)
T ss_dssp CTTCCEEEE--------SS----------CCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHH
T ss_pred ccccceEEE--------ec----------CCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHH
Confidence 999999999 88 3667889999999999998 46688888765433
No 70
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.84 E-value=3.8e-20 Score=194.47 Aligned_cols=112 Identities=18% Similarity=0.230 Sum_probs=100.7
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCe
Q 011751 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGI 332 (478)
Q Consensus 253 ~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v 332 (478)
.++++||||+|+..++.++..|.+. ++.+..+||++++.+|..+++.|++|..+|+|||+++++|+|+|++
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~---------gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v 514 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI---------GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEV 514 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc---------CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCC
Confidence 4679999999999999999999886 7788899999999999999999999999999999999999999999
Q ss_pred EEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCCCCeEEEecCH
Q 011751 333 KYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPE 386 (478)
Q Consensus 333 ~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~ 386 (478)
++||+ ||.... ..|.|..+|+||+|||||.++|.|+.++++
T Consensus 515 ~lVi~--------~d~d~~-----G~p~s~~~~iQr~GRagR~~~G~~i~~~~~ 555 (661)
T 2d7d_A 515 SLVAI--------LDADKE-----GFLRSERSLIQTIGRAARNAEGRVIMYADK 555 (661)
T ss_dssp EEEEE--------TTTTCC-----TTTTSHHHHHHHHHTTTTSTTCEEEEECSS
T ss_pred CEEEE--------eCcccc-----cCCCCHHHHHHHhCcccCCCCCEEEEEEeC
Confidence 99999 553211 126789999999999999999999999965
No 71
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.74 E-value=8.5e-18 Score=153.91 Aligned_cols=122 Identities=22% Similarity=0.172 Sum_probs=81.3
Q ss_pred hHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCc-------cCCCcEEEEecchHHHHHHHHH
Q 011751 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF-------CRDGKLIGVTQPRRVAAVTVAK 77 (478)
Q Consensus 5 ~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~-------~~~~~~i~~~~p~~~l~~~~~~ 77 (478)
+.+...+...++++|.++++.+.+|+++++++|||||||..+...++.... ...+..++++.|+++++.|+.+
T Consensus 33 ~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~ 112 (228)
T 3iuy_A 33 KSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEA 112 (228)
T ss_dssp HHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHH
Confidence 334445556899999999999999999999999999999655444433211 1235678999999999999999
Q ss_pred HHHHHhCCcCCCEEEEEEee--------------cccCChhhhHHHHhhC--cCcCCCcceEeeccc
Q 011751 78 RVAEESGVELGQRVGYSIRF--------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAH 128 (478)
Q Consensus 78 ~~~~~~~~~~~~~vg~~~~~--------------~~~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H 128 (478)
.+.+.... +..+...... +..+.+..++..++.. ..+.+++++|+||||
T Consensus 113 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah 177 (228)
T 3iuy_A 113 ECSKYSYK--GLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEAD 177 (228)
T ss_dssp HHHHHCCT--TCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHH
T ss_pred HHHHhccc--CceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHH
Confidence 98776432 2222211111 1112233344333332 347889999999999
No 72
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.73 E-value=2e-17 Score=150.52 Aligned_cols=126 Identities=14% Similarity=0.095 Sum_probs=87.1
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccC-CCcEEEEecchHHHHHHHHHHHHHH
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPRRVAAVTVAKRVAEE 82 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~-~~~~i~~~~p~~~l~~~~~~~~~~~ 82 (478)
++.++..+...++++|.++++.+.+|+++++++|||||||..+...++...... .+.+++++.|+++++.|+.+.+.+.
T Consensus 16 ~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 95 (219)
T 1q0u_A 16 IEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKI 95 (219)
T ss_dssp HHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHH
Confidence 445556667789999999999999999999999999999977666665544332 3567999999999999999988766
Q ss_pred hCCcC---CCEEEEEEeec--------------ccCChhhhHHHHhhC--cCcCCCcceEeecccc
Q 011751 83 SGVEL---GQRVGYSIRFD--------------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHE 129 (478)
Q Consensus 83 ~~~~~---~~~vg~~~~~~--------------~~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~ 129 (478)
..... +..++...+.. ....+..++...+.. ..+.+++++|+||||.
T Consensus 96 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~ 161 (219)
T 1q0u_A 96 TKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADL 161 (219)
T ss_dssp HTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHH
T ss_pred hhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchH
Confidence 54221 22332221111 112333444444433 3467899999999993
No 73
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.73 E-value=1.4e-17 Score=152.75 Aligned_cols=125 Identities=18% Similarity=0.098 Sum_probs=85.1
Q ss_pred hHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCcc-CCCcEEEEecchHHHHHHHHHHHHHHh
Q 011751 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC-RDGKLIGVTQPRRVAAVTVAKRVAEES 83 (478)
Q Consensus 5 ~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~-~~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (478)
+.+...+.-.++++|.++++.+.+|+++++++|||||||..+...++..... ..+.+++++.|+++++.|+.+.+.+..
T Consensus 37 ~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 116 (230)
T 2oxc_A 37 EGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIG 116 (230)
T ss_dssp HHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 3344444445899999999999999999999999999997765555544332 235689999999999999999887765
Q ss_pred CCcCCCEEEEEEeec-------------ccCChhhhHHHHhhC--cCcCCCcceEeecccc
Q 011751 84 GVELGQRVGYSIRFD-------------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHE 129 (478)
Q Consensus 84 ~~~~~~~vg~~~~~~-------------~~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~ 129 (478)
....+..++...+.. ..+.+..++..++.. ..+.+++++|+||||.
T Consensus 117 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~ 177 (230)
T 2oxc_A 117 IKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADK 177 (230)
T ss_dssp TTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHH
T ss_pred cccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchH
Confidence 432234444322111 112233334344332 3467899999999993
No 74
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.73 E-value=2.8e-17 Score=150.03 Aligned_cols=124 Identities=15% Similarity=0.103 Sum_probs=83.9
Q ss_pred hHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCcc-CCCcEEEEecchHHHHHHHHHHHHHHh
Q 011751 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC-RDGKLIGVTQPRRVAAVTVAKRVAEES 83 (478)
Q Consensus 5 ~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~-~~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (478)
+.+...+...++++|.++++.+.+++++++++|||||||..+...++..... ..+.+++++.|+++++.|+.+.+.+..
T Consensus 27 ~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (224)
T 1qde_A 27 RGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALA 106 (224)
T ss_dssp HHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHh
Confidence 4444455567899999999999999999999999999997765555544332 235679999999999999999887654
Q ss_pred CCcCCCEEEEEEee-------------cccCChhhhHHHHhhC--cCcCCCcceEeecccc
Q 011751 84 GVELGQRVGYSIRF-------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHE 129 (478)
Q Consensus 84 ~~~~~~~vg~~~~~-------------~~~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~ 129 (478)
.. .+..++..... +....+..++...+.. ..+.+++++|+||||.
T Consensus 107 ~~-~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~ 166 (224)
T 1qde_A 107 FH-MDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE 166 (224)
T ss_dssp TT-SCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH
T ss_pred cc-cCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhH
Confidence 32 22322221111 1112233333333332 3477899999999993
No 75
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.72 E-value=3.1e-17 Score=147.77 Aligned_cols=123 Identities=21% Similarity=0.102 Sum_probs=84.2
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCcc----CCCcEEEEecchHHHHHHHHHHH
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC----RDGKLIGVTQPRRVAAVTVAKRV 79 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~----~~~~~i~~~~p~~~l~~~~~~~~ 79 (478)
.+.+...+...++++|.++++.+.+++++++++|||||||..+...+...... ..+.+++++.|+++++.|+.+.+
T Consensus 13 ~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 92 (207)
T 2gxq_A 13 LEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASEL 92 (207)
T ss_dssp HHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHH
Confidence 34455556668999999999999999999999999999997766666554332 23567999999999999999998
Q ss_pred HHHhCCcCCCEEEEEEeecc--------------cCChhhhHHHHhh--CcCcCCCcceEeecccc
Q 011751 80 AEESGVELGQRVGYSIRFDD--------------RTSTSTRIKEALL--DPYLSRYSAIIVDEAHE 129 (478)
Q Consensus 80 ~~~~~~~~~~~vg~~~~~~~--------------~~~~~~~~~~~l~--~~~l~~~~~lIiDE~H~ 129 (478)
.+.... ..+........ ...+..++...+. ...+.+++++|+||||.
T Consensus 93 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~ 155 (207)
T 2gxq_A 93 TAVAPH---LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADE 155 (207)
T ss_dssp HHHCTT---SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHH
T ss_pred HHHhhc---ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhH
Confidence 776543 12221111111 1122223323322 23478899999999993
No 76
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.72 E-value=7e-18 Score=157.75 Aligned_cols=165 Identities=16% Similarity=0.169 Sum_probs=106.0
Q ss_pred HHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCc-----cCCCcEEEEecchHHHHHHHHHHHH
Q 011751 6 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF-----CRDGKLIGVTQPRRVAAVTVAKRVA 80 (478)
Q Consensus 6 ~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~-----~~~~~~i~~~~p~~~l~~~~~~~~~ 80 (478)
.+...+...++++|.++++.+..+++++++||||||||..+...++.... ...+..++++.|+++++.|+.+.+.
T Consensus 68 ~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~ 147 (262)
T 3ly5_A 68 AIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLK 147 (262)
T ss_dssp HHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHH
Confidence 34444555689999999999999999999999999999665555543221 1235679999999999999999887
Q ss_pred HHhCCcCCCEEEEEEeecc--------------cCChhhhHHHHhh-C--cCcCCCcceEeecccccchhhhHHHHHHHH
Q 011751 81 EESGVELGQRVGYSIRFDD--------------RTSTSTRIKEALL-D--PYLSRYSAIIVDEAHERTVHTDVLLGLLKK 143 (478)
Q Consensus 81 ~~~~~~~~~~vg~~~~~~~--------------~~~~~~~~~~~l~-~--~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~ 143 (478)
+.... .+..++...+... .+.+..++..++. . ..+.+++++|+||||
T Consensus 148 ~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah--------------- 211 (262)
T 3ly5_A 148 ELMTH-HVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEAD--------------- 211 (262)
T ss_dssp HHTTT-CCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHH---------------
T ss_pred HHHhh-cCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChH---------------
Confidence 76543 3444443322111 1122223322222 1 357889999999999
Q ss_pred HHHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCC--hhHHHh-hhCCC
Q 011751 144 VQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLD--ARGFSE-YFGCA 213 (478)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~--~~~~~~-~~~~~ 213 (478)
.+++.+++..+..++..++ .+.|+++||||++ .+.+++ ++...
T Consensus 212 -----------------------~l~~~~~~~~l~~i~~~~~----~~~q~l~~SAT~~~~v~~~~~~~l~~~ 257 (262)
T 3ly5_A 212 -----------------------RILDVGFEEELKQIIKLLP----TRRQTMLFSATQTRKVEDLARISLKKE 257 (262)
T ss_dssp -----------------------HHHHTTCHHHHHHHHHHSC----SSSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred -----------------------HHhhhhHHHHHHHHHHhCC----CCCeEEEEEecCCHHHHHHHHHHcCCC
Confidence 3333333333333343333 5679999999994 445554 44433
No 77
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.72 E-value=1.3e-17 Score=154.20 Aligned_cols=171 Identities=18% Similarity=0.149 Sum_probs=107.3
Q ss_pred HHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCc------cCCCcEEEEecchHHHHHHHHHHH
Q 011751 6 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF------CRDGKLIGVTQPRRVAAVTVAKRV 79 (478)
Q Consensus 6 ~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~------~~~~~~i~~~~p~~~l~~~~~~~~ 79 (478)
.+...+.-.++++|.++++.+.+|+++++++|||||||..+...++.... ...+..++++.|+++++.|+.+.+
T Consensus 43 ~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~ 122 (242)
T 3fe2_A 43 VIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVA 122 (242)
T ss_dssp HHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHH
T ss_pred HHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHH
Confidence 34444455689999999999999999999999999999665444433221 123567999999999999998877
Q ss_pred HHHhCCcCCCEEEEEEee--------------cccCChhhhHHHHhh--CcCcCCCcceEeecccccchhhhHHHHHHHH
Q 011751 80 AEESGVELGQRVGYSIRF--------------DDRTSTSTRIKEALL--DPYLSRYSAIIVDEAHERTVHTDVLLGLLKK 143 (478)
Q Consensus 80 ~~~~~~~~~~~vg~~~~~--------------~~~~~~~~~~~~~l~--~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~ 143 (478)
.+.... .+..++...+. +..+.+..++..++. ...+.+++++|+||||
T Consensus 123 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah--------------- 186 (242)
T 3fe2_A 123 AEYCRA-CRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEAD--------------- 186 (242)
T ss_dssp HHHHHH-TTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHH---------------
T ss_pred HHHHhh-cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHH---------------
Confidence 654321 22333322111 111223333333332 2357899999999999
Q ss_pred HHHhhcccccCCCCCCCCCCCchhhhccCCCCCCccccccccCCCCCCceEEEEcCCCC--hhHHH-hhhCCCCeEEeC
Q 011751 144 VQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLD--ARGFS-EYFGCAKAVHVQ 219 (478)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~--~~~~~-~~~~~~~~~~~~ 219 (478)
.+++.++...+..++..++ ++.|+++||||++ .+.+. .++.++..+.+.
T Consensus 187 -----------------------~l~~~~~~~~~~~i~~~~~----~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~ 238 (242)
T 3fe2_A 187 -----------------------RMLDMGFEPQIRKIVDQIR----PDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG 238 (242)
T ss_dssp -----------------------HHHHTTCHHHHHHHHTTSC----SSCEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred -----------------------HHhhhCcHHHHHHHHHhCC----ccceEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 3444444444444444443 6789999999994 44454 455554444443
No 78
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=153.60 Aligned_cols=124 Identities=19% Similarity=0.187 Sum_probs=83.7
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCc-----cCCCcEEEEecchHHHHHHHHHH
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF-----CRDGKLIGVTQPRRVAAVTVAKR 78 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~-----~~~~~~i~~~~p~~~l~~~~~~~ 78 (478)
++.+...+...++++|.++++.+.+|+++++++|||||||+++...++.... ...+.+++++.|+++++.|+.+.
T Consensus 37 ~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 116 (236)
T 2pl3_A 37 LKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEV 116 (236)
T ss_dssp HHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHH
Confidence 3445555666789999999999999999999999999999765555543321 12356799999999999999998
Q ss_pred HHHHhCCcCCCEEEEEEeecc-------------cCChhhhHHHHhh---CcCcCCCcceEeeccc
Q 011751 79 VAEESGVELGQRVGYSIRFDD-------------RTSTSTRIKEALL---DPYLSRYSAIIVDEAH 128 (478)
Q Consensus 79 ~~~~~~~~~~~~vg~~~~~~~-------------~~~~~~~~~~~l~---~~~l~~~~~lIiDE~H 128 (478)
+.+... ..+..++...+... .+.+..++...+. ...+.+++++|+||||
T Consensus 117 ~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah 181 (236)
T 2pl3_A 117 LRKVGK-NHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEAD 181 (236)
T ss_dssp HHHHTT-TSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHH
T ss_pred HHHHhC-CCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChH
Confidence 876543 22333333221111 1122333333332 2346789999999999
No 79
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.72 E-value=3.5e-17 Score=147.26 Aligned_cols=125 Identities=16% Similarity=0.104 Sum_probs=85.3
Q ss_pred hHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCcc-CCCcEEEEecchHHHHHHHHHHHHHHh
Q 011751 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC-RDGKLIGVTQPRRVAAVTVAKRVAEES 83 (478)
Q Consensus 5 ~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~-~~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (478)
+.+...+.-.++++|.++++.+.+++++++++|||||||..+...+...... ..+.+++++.|+++++.|+.+.+.+..
T Consensus 16 ~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 95 (206)
T 1vec_A 16 MGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVS 95 (206)
T ss_dssp HHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHH
Confidence 4444455557899999999999999999999999999996665555544322 235579999999999999999887765
Q ss_pred CCcCCCEEEEEEeecc--------------cCChhhhHHHHhhC--cCcCCCcceEeecccc
Q 011751 84 GVELGQRVGYSIRFDD--------------RTSTSTRIKEALLD--PYLSRYSAIIVDEAHE 129 (478)
Q Consensus 84 ~~~~~~~vg~~~~~~~--------------~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~ 129 (478)
....+..++....... ...+..++...+.. ..+.+++++|+||||.
T Consensus 96 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~ 157 (206)
T 1vec_A 96 KHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 157 (206)
T ss_dssp TTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH
T ss_pred hhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH
Confidence 4322334433221111 11222333333332 3477899999999994
No 80
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=157.62 Aligned_cols=125 Identities=12% Similarity=0.055 Sum_probs=88.2
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcC--CEEEEEcCCCCcHHhHHHHHHhhcCccC-CCcEEEEecchHHHHHHHHHHHH
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPRRVAAVTVAKRVA 80 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~--~~~~i~apTGsGKT~~~~~~~~~~~~~~-~~~~i~~~~p~~~l~~~~~~~~~ 80 (478)
++.+...+...++++|.++++.+..| ++++++||||||||..+.+.++...... .+..++++.|+++++.|+.+.+.
T Consensus 104 ~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~ 183 (300)
T 3fmo_B 104 LQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIE 183 (300)
T ss_dssp HHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHH
Confidence 34455566678899999999999987 9999999999999977665555544332 34579999999999999998887
Q ss_pred HHhCCcCCCEEEEEEeec-----------ccCChhhhHHHHhhC---cCcCCCcceEeeccc
Q 011751 81 EESGVELGQRVGYSIRFD-----------DRTSTSTRIKEALLD---PYLSRYSAIIVDEAH 128 (478)
Q Consensus 81 ~~~~~~~~~~vg~~~~~~-----------~~~~~~~~~~~~l~~---~~l~~~~~lIiDE~H 128 (478)
.......+..+++..... ..+.+..++..++.. ..+.++++||+||||
T Consensus 184 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad 245 (300)
T 3fmo_B 184 QMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 245 (300)
T ss_dssp HHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHH
T ss_pred HHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHH
Confidence 665433234444332211 112344555555533 347899999999999
No 81
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.72 E-value=2.4e-17 Score=152.91 Aligned_cols=124 Identities=18% Similarity=0.139 Sum_probs=85.1
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccC-CCcEEEEecchHHHHHHHHHHHHHH
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPRRVAAVTVAKRVAEE 82 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~-~~~~i~~~~p~~~l~~~~~~~~~~~ 82 (478)
.+.++..+...++++|.++++.+.+|+++++++|||||||.++..+++...... .+.+++++.|+++++.|+.+.+.+.
T Consensus 55 ~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~ 134 (249)
T 3ber_A 55 CEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEAL 134 (249)
T ss_dssp HHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 345555666689999999999999999999999999999977666665543322 2457999999999999999887665
Q ss_pred hCCcCCCEEEEEEeec--------------ccCChhhhHHHHhhC---cCcCCCcceEeeccc
Q 011751 83 SGVELGQRVGYSIRFD--------------DRTSTSTRIKEALLD---PYLSRYSAIIVDEAH 128 (478)
Q Consensus 83 ~~~~~~~~vg~~~~~~--------------~~~~~~~~~~~~l~~---~~l~~~~~lIiDE~H 128 (478)
.. ..+..++...... ....+..++...+.. ..+.+++++|+||||
T Consensus 135 ~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah 196 (249)
T 3ber_A 135 GS-SIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEAD 196 (249)
T ss_dssp HG-GGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHH
T ss_pred hc-cCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChh
Confidence 43 2233333222111 111223333333321 347889999999999
No 82
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.71 E-value=3.6e-17 Score=150.65 Aligned_cols=123 Identities=17% Similarity=0.114 Sum_probs=84.1
Q ss_pred HHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccC-CCcEEEEecchHHHHHHHHHHHHHHhC
Q 011751 6 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPRRVAAVTVAKRVAEESG 84 (478)
Q Consensus 6 ~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~-~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (478)
.+...+.-.++++|.++++.+.+++++++++|||||||..+...++...... .+.+++++.|+++++.|+.+.+.+...
T Consensus 44 ~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 123 (237)
T 3bor_A 44 GIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGD 123 (237)
T ss_dssp HHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhh
Confidence 3344444458999999999999999999999999999977666666544322 356799999999999999998876543
Q ss_pred CcCCCEEEEEEe---------------ecccCChhhhHHHHhhC--cCcCCCcceEeecccc
Q 011751 85 VELGQRVGYSIR---------------FDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHE 129 (478)
Q Consensus 85 ~~~~~~vg~~~~---------------~~~~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~ 129 (478)
. .+..+..... .+..+.+..++..++.. ..+.+++++|+||||.
T Consensus 124 ~-~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~ 184 (237)
T 3bor_A 124 Y-MGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADE 184 (237)
T ss_dssp T-TTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHH
T ss_pred h-cCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchH
Confidence 2 2222221111 11122334444444433 3467899999999993
No 83
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.70 E-value=4.5e-16 Score=141.57 Aligned_cols=124 Identities=15% Similarity=0.004 Sum_probs=84.5
Q ss_pred HHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccC-CCcEEEEecchHHHHHHHHHHHHHHhC
Q 011751 6 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPRRVAAVTVAKRVAEESG 84 (478)
Q Consensus 6 ~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~-~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (478)
.+...+.-.++++|.++++.+.+++++++++|||||||..+...+....... ++.+++++.|+++++.|+.+.+.+...
T Consensus 28 ~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 107 (220)
T 1t6n_A 28 AIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSK 107 (220)
T ss_dssp HHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 3333444458999999999999999999999999999977666665554332 244799999999999999998877654
Q ss_pred CcCCCEEEEEEeec---------------ccCChhhhHHHHhhC--cCcCCCcceEeecccc
Q 011751 85 VELGQRVGYSIRFD---------------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHE 129 (478)
Q Consensus 85 ~~~~~~vg~~~~~~---------------~~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~ 129 (478)
...+..++...... ....+..++..++.. ..+.+++++|+||||.
T Consensus 108 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~ 169 (220)
T 1t6n_A 108 YMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDK 169 (220)
T ss_dssp TSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHH
T ss_pred hCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHH
Confidence 32234444322111 111222333333332 3478899999999995
No 84
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.69 E-value=8.4e-17 Score=148.99 Aligned_cols=122 Identities=19% Similarity=0.178 Sum_probs=83.4
Q ss_pred HHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCc--cCCCcEEEEecchHHHHHHHHHHHHHHhC
Q 011751 7 LQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF--CRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (478)
Q Consensus 7 ~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~--~~~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (478)
+...+...++++|.++++.+.+|+++++++|||||||..+...++.... ...+.+++++.|+++++.|+.+.+.+...
T Consensus 44 l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 123 (245)
T 3dkp_A 44 ILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISE 123 (245)
T ss_dssp HHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred HHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhc
Confidence 3444555689999999999999999999999999999665555544332 22356799999999999999998876644
Q ss_pred CcCCCEEEEEEe---------------ecccCChhhhHHHHhhC----cCcCCCcceEeecccc
Q 011751 85 VELGQRVGYSIR---------------FDDRTSTSTRIKEALLD----PYLSRYSAIIVDEAHE 129 (478)
Q Consensus 85 ~~~~~~vg~~~~---------------~~~~~~~~~~~~~~l~~----~~l~~~~~lIiDE~H~ 129 (478)
. .+..+..... .+..+.+..++..++.. ..+.+++++|+||||.
T Consensus 124 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~ 186 (245)
T 3dkp_A 124 G-TGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDK 186 (245)
T ss_dssp T-SCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHH
T ss_pred c-cCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHH
Confidence 2 2222221110 01122334455444433 3578899999999995
No 85
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.68 E-value=1.1e-16 Score=148.85 Aligned_cols=121 Identities=17% Similarity=0.118 Sum_probs=80.8
Q ss_pred HHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCcc----------CCCcEEEEecchHHHHHHHH
Q 011751 7 LQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC----------RDGKLIGVTQPRRVAAVTVA 76 (478)
Q Consensus 7 ~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~----------~~~~~i~~~~p~~~l~~~~~ 76 (478)
+...+...++++|.++++.+.+|+++++++|||||||..+...++..... ..+.+++++.|+++++.|+.
T Consensus 38 l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~ 117 (253)
T 1wrb_A 38 ILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQIL 117 (253)
T ss_dssp TTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHH
Confidence 33344556899999999999999999999999999996655555433211 12357999999999999999
Q ss_pred HHHHHHhCCcCCCEEEEEEeec--------------ccCChhhhHHHHhhC--cCcCCCcceEeeccc
Q 011751 77 KRVAEESGVELGQRVGYSIRFD--------------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAH 128 (478)
Q Consensus 77 ~~~~~~~~~~~~~~vg~~~~~~--------------~~~~~~~~~~~~l~~--~~l~~~~~lIiDE~H 128 (478)
+.+.+..... +..+....... ..+.+..++..++.. ..+.+++++|+||||
T Consensus 118 ~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah 184 (253)
T 1wrb_A 118 SESQKFSLNT-PLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEAD 184 (253)
T ss_dssp HHHHHHHTTS-SCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHH
T ss_pred HHHHHHhccC-CceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHH
Confidence 9887665422 22332221111 112223334344333 347889999999999
No 86
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.59 E-value=1.6e-13 Score=142.73 Aligned_cols=113 Identities=20% Similarity=0.125 Sum_probs=76.2
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEE
Q 011751 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRV 91 (478)
Q Consensus 12 ~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~v 91 (478)
.+.++++|...+..+.+|+ +..+.||+|||..+.+.++..... +..+.++.|++.||.|.++.+...+. ..+..+
T Consensus 77 G~~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~--G~qv~VvTPTreLA~Qdae~m~~l~~-~lGLsv 151 (997)
T 2ipc_A 77 GMRHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT--GKGVHVVTVNDYLARRDAEWMGPVYR-GLGLSV 151 (997)
T ss_dssp CCCCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT--CSCCEEEESSHHHHHHHHHHHHHHHH-TTTCCE
T ss_pred CCCCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh--CCCEEEEeCCHHHHHHHHHHHHHHHH-hcCCeE
Confidence 4577999999999999999 899999999996655555332222 45688999999999999988766554 345666
Q ss_pred EEEEeecc------------cCChhhhH-HHHhhC--------cCcC---CCcceEeecccc
Q 011751 92 GYSIRFDD------------RTSTSTRI-KEALLD--------PYLS---RYSAIIVDEAHE 129 (478)
Q Consensus 92 g~~~~~~~------------~~~~~~~~-~~~l~~--------~~l~---~~~~lIiDE~H~ 129 (478)
+...+... ...+..++ ..++.+ ..+. ++.++|+||+|.
T Consensus 152 ~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDs 213 (997)
T 2ipc_A 152 GVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDS 213 (997)
T ss_dssp EECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHH
T ss_pred EEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHH
Confidence 64432211 11122222 122222 2356 899999999995
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.55 E-value=2e-14 Score=148.01 Aligned_cols=127 Identities=17% Similarity=0.187 Sum_probs=70.7
Q ss_pred HHHHHHHHhhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEE-
Q 011751 240 ATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVIL- 318 (478)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlv- 318 (478)
.....+..+... .++++|||+||....+.+++.+.+ ..+. .++.. .+|..+++.|+++. .|++
T Consensus 371 ~~~~~l~~~~~~-~~g~~lvff~S~~~~~~v~~~l~~-----------~~~~-~q~~~--~~~~~~l~~f~~~~-~il~~ 434 (540)
T 2vl7_A 371 IYSILLKRIYEN-SSKSVLVFFPSYEMLESVRIHLSG-----------IPVI-EENKK--TRHEEVLELMKTGK-YLVML 434 (540)
T ss_dssp HHHHHHHHHHHT-CSSEEEEEESCHHHHHHHHTTCTT-----------SCEE-ESTTT--CCHHHHHHHHHTSC-CEEEE
T ss_pred HHHHHHHHHHHh-CCCCEEEEeCCHHHHHHHHHHhcc-----------CceE-ecCCC--CcHHHHHHHHhcCC-eEEEE
Confidence 334444444433 478899999999999998876642 2232 34443 45777888887764 5666
Q ss_pred -eccccccccccCC----eEEEEeCCcccceeecCC-------------CCcccceeeecCHHHHHHhhcccCCCC--CC
Q 011751 319 -ATNIAETSVTIPG----IKYVIDPGFVKARLYDPV-------------KGMESLLVVPISKAQALQRSGRAGREG--PG 378 (478)
Q Consensus 319 -aT~~~~~Gvdip~----v~~VI~~g~~~~~~yd~~-------------~~~~~~~~~~~s~~~~~Qr~GRaGR~~--~G 378 (478)
+|+.+.+|||+|+ +++||..|++-...-||. .+... ...|.......|-+||+-|.. .|
T Consensus 435 V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~Q~~GR~iR~~~D~g 513 (540)
T 2vl7_A 435 VMRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDS-IIHDLTAIVIKQTIGRAFRDPNDYV 513 (540)
T ss_dssp EC---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHH-HHHHHHHHHHHHHHHHHCCSTTCCC
T ss_pred EecCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhH-HHHHHHHHHHHHHhCCcccCCCccE
Confidence 8999999999997 899998887643322221 01000 011222567889999999976 66
Q ss_pred eEEEe
Q 011751 379 KCFRL 383 (478)
Q Consensus 379 ~~~~l 383 (478)
..+.+
T Consensus 514 ~v~ll 518 (540)
T 2vl7_A 514 KIYLC 518 (540)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 65443
No 88
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.53 E-value=1.9e-14 Score=130.18 Aligned_cols=119 Identities=22% Similarity=0.112 Sum_probs=76.5
Q ss_pred hhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCcc----CCCcEEEEecchHHHHHH-HHHHHHHHhC
Q 011751 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC----RDGKLIGVTQPRRVAAVT-VAKRVAEESG 84 (478)
Q Consensus 10 ~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~----~~~~~i~~~~p~~~l~~~-~~~~~~~~~~ 84 (478)
...++++++|.+++..+.+++++++.+|||+|||+++..++...... ..+.+++++.|+++++.| ..+.+.+...
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 44568999999999999999999999999999997776666543211 124578899999999998 5555655544
Q ss_pred CcCCCEEEEEEee--------------cccCChhhhHHHHhhC--------cCcCCCcceEeeccccc
Q 011751 85 VELGQRVGYSIRF--------------DDRTSTSTRIKEALLD--------PYLSRYSAIIVDEAHER 130 (478)
Q Consensus 85 ~~~~~~vg~~~~~--------------~~~~~~~~~~~~~l~~--------~~l~~~~~lIiDE~H~r 130 (478)
.. ..++..... +..+.+...+...+.. ..+.++++||+||||..
T Consensus 109 ~~--~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~ 174 (216)
T 3b6e_A 109 KW--YRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHT 174 (216)
T ss_dssp TT--SCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC---
T ss_pred cC--ceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhh
Confidence 31 222211110 0111222333333332 34678999999999964
No 89
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.52 E-value=6.7e-15 Score=137.52 Aligned_cols=110 Identities=14% Similarity=0.169 Sum_probs=84.9
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCC-ccE-EEEeccccccccccC
Q 011751 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG-FRK-VILATNIAETSVTIP 330 (478)
Q Consensus 253 ~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g-~~~-vlvaT~~~~~Gvdip 330 (478)
++.++||||++...++.+...|.+.. ++.+..+||+++.++|..+++.|++| ..+ +|+||+++++|+|++
T Consensus 111 ~~~kvlIFs~~~~~~~~l~~~L~~~~--------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~ 182 (271)
T 1z5z_A 111 EGDKIAIFTQFVDMGKIIRNIIEKEL--------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLT 182 (271)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHH--------CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCT
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhc--------CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcc
Confidence 47899999999999999999998742 56677899999999999999999988 666 789999999999999
Q ss_pred CeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC---CCeEEEecCHhh
Q 011751 331 GIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPENE 388 (478)
Q Consensus 331 ~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~ 388 (478)
++++||+ || .|.++..+.||+||++|.| +-.+|++++...
T Consensus 183 ~a~~VI~--------~d----------~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~T 225 (271)
T 1z5z_A 183 SANRVIH--------FD----------RWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 225 (271)
T ss_dssp TCSEEEE--------CS----------CCSCTTTC--------------CCEEEEEEETTS
T ss_pred cCCEEEE--------EC----------CCCChhHHHHHHHhccccCCCCceEEEEEeeCCC
Confidence 9999999 88 4677888999999999999 345688886553
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.42 E-value=8.2e-14 Score=131.61 Aligned_cols=113 Identities=13% Similarity=0.010 Sum_probs=75.1
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEE
Q 011751 13 LPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVG 92 (478)
Q Consensus 13 ~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg 92 (478)
+.++++|.+++..+..+++.++++|||+|||.++..++..... .++.+++++.|+++++.|..+++.+..... ...++
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~-~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~-~~~~~ 189 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLE-NYEGKILIIVPTTALTTQMADDFVDYRLFS-HAMIK 189 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHH-HCSSEEEEECSSHHHHHHHHHHHHHHTSCC-GGGEE
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHhcccc-cceEE
Confidence 5789999999999988889999999999999776555443221 223479999999999999999987764321 12222
Q ss_pred EEEeeccc-----------CChhhhHHHHhhC--cCcCCCcceEeeccccc
Q 011751 93 YSIRFDDR-----------TSTSTRIKEALLD--PYLSRYSAIIVDEAHER 130 (478)
Q Consensus 93 ~~~~~~~~-----------~~~~~~~~~~l~~--~~l~~~~~lIiDE~H~r 130 (478)
........ +.+.. .+... ..+.+++++|+||||..
T Consensus 190 ~~~~~~~~~~~~~~~~~I~v~T~~---~l~~~~~~~~~~~~~vIiDEaH~~ 237 (282)
T 1rif_A 190 KIGGGASKDDKYKNDAPVVVGTWQ---TVVKQPKEWFSQFGMMMNDECHLA 237 (282)
T ss_dssp ECSTTCSSTTCCCTTCSEEEECHH---HHTTSCGGGGGGEEEEEEETGGGC
T ss_pred EEeCCCcchhhhccCCcEEEEchH---HHHhhHHHHHhhCCEEEEECCccC
Confidence 11111000 11111 12221 35678999999999953
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.39 E-value=6.2e-13 Score=121.92 Aligned_cols=109 Identities=21% Similarity=0.103 Sum_probs=73.4
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEE
Q 011751 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRV 91 (478)
Q Consensus 12 ~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~v 91 (478)
.+.++++|.+++..+.+++++++++|||+|||.++..++... +..++++.|++.++.|..+.+.+ ++.. .+
T Consensus 91 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~liv~P~~~L~~q~~~~~~~-~~~~---~v 161 (237)
T 2fz4_A 91 EISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGI-FGEE---YV 161 (237)
T ss_dssp CCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-----CSCEEEEESSHHHHHHHHHHHGG-GCGG---GE
T ss_pred CCCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEeCCHHHHHHHHHHHHh-CCCC---eE
Confidence 356789999999999999999999999999998776666554 34688889999999999888876 4432 02
Q ss_pred EEEEeec-----ccCChhhhHHHHhhCcCcCCCcceEeeccccc
Q 011751 92 GYSIRFD-----DRTSTSTRIKEALLDPYLSRYSAIIVDEAHER 130 (478)
Q Consensus 92 g~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~lIiDE~H~r 130 (478)
+...... ..+.+...+..... ....++++|||||+|..
T Consensus 162 ~~~~g~~~~~~~i~v~T~~~l~~~~~-~~~~~~~llIiDEaH~l 204 (237)
T 2fz4_A 162 GEFSGRIKELKPLTVSTYDSAYVNAE-KLGNRFMLLIFDEVHHL 204 (237)
T ss_dssp EEESSSCBCCCSEEEEEHHHHHHTHH-HHTTTCSEEEEECSSCC
T ss_pred EEEeCCCCCcCCEEEEeHHHHHhhHH-HhcccCCEEEEECCccC
Confidence 2111100 01111222221111 12346899999999953
No 92
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.31 E-value=3.5e-11 Score=124.27 Aligned_cols=173 Identities=17% Similarity=0.152 Sum_probs=100.4
Q ss_pred ceEEEEcCCC-ChhHHHhhhCCC-CeE------EeCCcc-ccceEEec-CCCC------cchHHHHHHHHHHhhhcCCCC
Q 011751 192 LKLIIMSASL-DARGFSEYFGCA-KAV------HVQGRQ-FPVEILYT-LYPE------PDYLDATLITIFQVHLDEAPG 255 (478)
Q Consensus 192 ~~~i~lSAT~-~~~~~~~~~~~~-~~~------~~~~~~-~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~ 255 (478)
..+|++|||+ +.+.+.+.+|-. +.. .++... ....++.. ..+. ..+.......+..+... .+|
T Consensus 316 ~svIltSaTL~~~~~~~~~lGl~~~~~~~~~~~~~~spf~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~-~~g 394 (551)
T 3crv_A 316 LSIILMSGTLPPREYMEKVWGIKRNMLYLDVEREIQKRVSGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQ-AKA 394 (551)
T ss_dssp CEEEEEESSCCCHHHHHHTSCCCSCEEEEEHHHHTTSCCSCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHH-CSS
T ss_pred ceEEEEeeCCCcHHHHHHHhCCCCccccccceeecCCcCCCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHh-CCC
Confidence 5899999999 555667777654 221 012111 01111111 1111 22344555555555544 377
Q ss_pred CEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEec--cccccccccC---
Q 011751 256 DILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILAT--NIAETSVTIP--- 330 (478)
Q Consensus 256 ~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT--~~~~~Gvdip--- 330 (478)
.+|||+||....+.+++. .+..+..-..+++.++..+.++ +++ --|++|| ..+..|||+|
T Consensus 395 ~~lvlF~Sy~~l~~v~~~------------~~~~v~~q~~~~~~~~~~~~~~--~~~-~~vl~~v~gg~~~EGiD~~d~~ 459 (551)
T 3crv_A 395 NVLVVFPSYEIMDRVMSR------------ISLPKYVESEDSSVEDLYSAIS--ANN-KVLIGSVGKGKLAEGIELRNND 459 (551)
T ss_dssp EEEEEESCHHHHHHHHTT------------CCSSEEECCSSCCHHHHHHHTT--SSS-SCEEEEESSCCSCCSSCCEETT
T ss_pred CEEEEecCHHHHHHHHHh------------cCCcEEEcCCCCCHHHHHHHHH--hcC-CeEEEEEecceecccccccccC
Confidence 999999999999888751 1334444344566555544444 233 3799998 6999999999
Q ss_pred --CeEEEEeCCcccceeecC-----------CCCcccc---eeeecCHHHHHHhhcccCCCC--CCeEEE
Q 011751 331 --GIKYVIDPGFVKARLYDP-----------VKGMESL---LVVPISKAQALQRSGRAGREG--PGKCFR 382 (478)
Q Consensus 331 --~v~~VI~~g~~~~~~yd~-----------~~~~~~~---~~~~~s~~~~~Qr~GRaGR~~--~G~~~~ 382 (478)
..+.||-.|++=-.. || ..|.... ...| ......|-+||+=|.. .|..+.
T Consensus 460 g~~l~~viI~~lPfp~~-dp~~~ar~~~~~~~~g~~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G~v~l 527 (551)
T 3crv_A 460 RSLISDVVIVGIPYPPP-DDYLKILAQRVSLKMNRENEEFLFKIP-ALVTIKQAIGRAIRDVNDKCNVWL 527 (551)
T ss_dssp EESEEEEEEESCCCCCC-SHHHHHHHHHTTCCSSTTTHHHHTHHH-HHHHHHHHHHTTCCSTTCEEEEEE
T ss_pred CcceeEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCchhHHHHHHH-HHHHHHHHhccCccCCCccEEEEE
Confidence 367777767654333 33 1122111 2234 5667889999999987 454443
No 93
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=98.87 E-value=7.8e-10 Score=102.26 Aligned_cols=56 Identities=36% Similarity=0.686 Sum_probs=47.7
Q ss_pred CCccC-CCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHhccCCCCHhhhchheec
Q 011751 421 IGFDF-MEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSKALIVA 477 (478)
Q Consensus 421 ~~~~~-~~~p~~~~l~~al~~L~~~g~l~~~~~~t~~lG~~~~~~~~~p~~~~~l~~~ 477 (478)
..|+| ++||+.+++..|++.|..+||||++|++|+ +|+.|+++|++|++||||+.|
T Consensus 6 ~~l~~~ldpP~~~~l~~A~~~L~~LgAld~~g~lT~-lG~~ma~lPl~P~lakmLl~a 62 (270)
T 3i4u_A 6 PEFELGTRGSPMETLITAMEQLYTLGALDDEGLLTR-LGRRMAEFPLEPMLCKMLIMS 62 (270)
T ss_dssp --------CCHHHHHHHHHHHHHHHTSBCTTSCBCH-HHHHHTTSCSCHHHHHHHHHH
T ss_pred hccccCCCCcCHHHHHHHHHHHHHcCCcCCCCCccH-HHHHHHhCCCCHHHHHHHHHh
Confidence 34678 999999999999999999999999999996 999999999999999999876
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.27 E-value=2.2e-06 Score=89.06 Aligned_cols=65 Identities=22% Similarity=0.225 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcC--ccCCCcEEEEecchHHHHHHHHHHHH
Q 011751 16 ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAG--FCRDGKLIGVTQPRRVAAVTVAKRVA 80 (478)
Q Consensus 16 ~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~--~~~~~~~i~~~~p~~~l~~~~~~~~~ 80 (478)
.+.|++++..+..+++++++|++||||||++..++.... ....+..++++.||..++.+..+.+.
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~ 217 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLG 217 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHH
Confidence 568999999999999999999999999977655543221 11235579999999999988877654
No 95
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.94 E-value=0.00039 Score=69.71 Aligned_cols=65 Identities=20% Similarity=0.137 Sum_probs=46.7
Q ss_pred CcHHHHHHHHHHHhc----CC-EEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHH
Q 011751 14 PIASVEKRLVEEVRK----ND-ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRV 79 (478)
Q Consensus 14 ~~~~~q~~~~~~l~~----~~-~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~ 79 (478)
.+.+-|++++..+.. ++ .++|.|+.|||||+++..++...... +...++++.|+..++..+.+++
T Consensus 25 ~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~-~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 25 DLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALIST-GETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhc-CCceEEEecCcHHHHHHHHhhh
Confidence 466789999887643 23 99999999999998876655433221 2236888899998887776654
No 96
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.94 E-value=2.6e-05 Score=80.24 Aligned_cols=64 Identities=17% Similarity=0.293 Sum_probs=50.7
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHH
Q 011751 13 LPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKR 78 (478)
Q Consensus 13 ~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~ 78 (478)
+.+.+.|++++..+..++.++|+||+||||||++..++.... ..+..++++.|+..++....+.
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~--~~g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAE--SLGLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEESSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHH--hcCCeEEEecCcHHHHHHhHhh
Confidence 456789999999999999999999999999988766554322 1356788999999888766554
No 97
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.60 E-value=7.1e-05 Score=77.83 Aligned_cols=175 Identities=22% Similarity=0.287 Sum_probs=96.4
Q ss_pred ceEEEEcCCC-ChhHHHhhhCCC-CeEEeCCcccc---ceEEecCC-C------CcchHHHHHHHHHHhhhcCCCCCEEE
Q 011751 192 LKLIIMSASL-DARGFSEYFGCA-KAVHVQGRQFP---VEILYTLY-P------EPDYLDATLITIFQVHLDEAPGDILV 259 (478)
Q Consensus 192 ~~~i~lSAT~-~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~LV 259 (478)
..+|++|||+ +.+.+.+.+|-. ..+.++.. ++ ..+.+... + ...+.......+..+.... +|++||
T Consensus 376 ~~~il~SaTL~p~~~~~~~lGl~~~~~~~~sp-f~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~-~g~~lv 453 (620)
T 4a15_A 376 SKTIHMSGTLDPFDFYSDITGFEIPFKKIGEI-FPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKV-KKNTIV 453 (620)
T ss_dssp SEEEEEESSCCSHHHHHHHHCCCCCEEECCCC-SCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHHH-CSCEEE
T ss_pred CeEEEEccCCCcHHHHHHHhCCCceeeecCCC-CCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhC-CCCEEE
Confidence 3579999999 666677777653 22222221 11 11111111 1 1222334444444544433 778999
Q ss_pred EcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEecc--ccccccccCC--eEEE
Q 011751 260 FLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN--IAETSVTIPG--IKYV 335 (478)
Q Consensus 260 F~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~--~~~~Gvdip~--v~~V 335 (478)
|+||....+.+++.+. . . +.. ...+++..++..+++.|+ +.-.|++++. .+..|||+|+ .+.|
T Consensus 454 lF~Sy~~l~~v~~~l~-~---~-----~~~---~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~v 520 (620)
T 4a15_A 454 YFPSYSLMDRVENRVS-F---E-----HMK---EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMI 520 (620)
T ss_dssp EESCHHHHHHHTSSCC-S---C-----CEE---CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEE
T ss_pred EeCCHHHHHHHHHHHH-h---c-----chh---ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEE
Confidence 9999999988877664 1 0 222 445666667888999998 7788999975 9999999984 5577
Q ss_pred EeCCcccceeecCC-------------CCcccceeeecCHHHHHHhhcccCCCC--CCeEEEe
Q 011751 336 IDPGFVKARLYDPV-------------KGMESLLVVPISKAQALQRSGRAGREG--PGKCFRL 383 (478)
Q Consensus 336 I~~g~~~~~~yd~~-------------~~~~~~~~~~~s~~~~~Qr~GRaGR~~--~G~~~~l 383 (478)
|-.|+.=-.- ||. .+...-...| ......|-+||+=|.. .|..+.+
T Consensus 521 iI~~lPfp~~-~p~~~ar~~~~~~~~g~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G~v~ll 581 (620)
T 4a15_A 521 ILAGLPFPRP-DAINRSLFDYYERKYGKGWEYSVVYP-TAIKIRQEIGRLIRSAEDTGACVIL 581 (620)
T ss_dssp EESSCCCCCC-CHHHHHHHHHHHHHHSCHHHHHTHHH-HHHHHHHHHHTTCCSTTCCEEEEEE
T ss_pred EEEcCCCCCC-CHHHHHHHHHHHHhhCCCchHHhHHH-HHHHHHHHhCccccCCCceEEEEEE
Confidence 7666642111 110 0000001123 3456789999999977 5655443
No 98
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.55 E-value=0.0007 Score=66.62 Aligned_cols=94 Identities=21% Similarity=0.162 Sum_probs=51.3
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCChhhhHH
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK 108 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~ 108 (478)
+..++++||+|+||||++..++...........++-..+.+..+......+....+... ........+.....
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~-------~~~~~~~dp~~i~~ 169 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQV-------YGEPNNQNPIEIAK 169 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCE-------ECCTTCSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCce-------eeccccCCHHHHHH
Confidence 35788999999999988877665433221122233344666666555555555444321 01111112222222
Q ss_pred HHhhCcCcCCCcceEeecccc
Q 011751 109 EALLDPYLSRYSAIIVDEAHE 129 (478)
Q Consensus 109 ~~l~~~~l~~~~~lIiDE~H~ 129 (478)
..+......+++++|||++-.
T Consensus 170 ~al~~a~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 170 KGVDIFVKNKMDIIIVDTAGR 190 (433)
T ss_dssp HHHHHTTTTTCSEEEEEECCC
T ss_pred HHHHHHHhcCCCEEEEECCCC
Confidence 333333346799999999853
No 99
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.54 E-value=0.0001 Score=76.58 Aligned_cols=67 Identities=13% Similarity=0.095 Sum_probs=47.6
Q ss_pred CCcHHHHHHHHH----HHhcCCEEEEEcCCCCcHH--hHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHH
Q 011751 13 LPIASVEKRLVE----EVRKNDILIIVGETGSGKT--TQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (478)
Q Consensus 13 ~~~~~~q~~~~~----~l~~~~~~~i~apTGsGKT--~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~ 82 (478)
|.+++.|.++.. ++.+|+++++.||||+||| +++|.+..... .+.+++|+.||+.++.|..+.+...
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~---~~~kvli~t~T~~l~~Qi~~el~~l 74 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE---RKLKVLYLVRTNSQEEQVIKELRSL 74 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH---HTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh---cCCeEEEECCCHHHHHHHHHHHHHH
Confidence 445777877764 5679999999999999999 34443332211 2457999999999999988776543
No 100
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.40 E-value=0.00011 Score=61.49 Aligned_cols=24 Identities=25% Similarity=0.548 Sum_probs=20.7
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
.++.+++.||+|+|||+++..+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999988866554
No 101
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.32 E-value=0.00041 Score=59.89 Aligned_cols=37 Identities=27% Similarity=0.301 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHh---------cCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 16 ASVEKRLVEEVR---------KNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 16 ~~~q~~~~~~l~---------~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+.|++++..+. .|+.+++.||+|+||||++..++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 445666655543 5799999999999999888766544
No 102
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.24 E-value=0.0014 Score=61.87 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=21.2
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.+.+++|.||+|+|||+++...+.+.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 55789999999999998887776443
No 103
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.22 E-value=0.00046 Score=59.89 Aligned_cols=40 Identities=30% Similarity=0.396 Sum_probs=29.0
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchH
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRR 69 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~ 69 (478)
.|+..+++||.||||||++...+.+... .+..++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~--~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKL--GKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH--TTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeecc
Confidence 4778899999999999998777655432 245677777764
No 104
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.22 E-value=0.00027 Score=63.16 Aligned_cols=41 Identities=24% Similarity=0.226 Sum_probs=29.9
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchH
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRR 69 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~ 69 (478)
..|..++++||+|+||||.+...+.+.... +.+++++.|..
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~--g~kVli~~~~~ 50 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYA--DVKYLVFKPKI 50 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEEECC
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEEecc
Confidence 457788999999999999988887665432 44567776554
No 105
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.21 E-value=0.00048 Score=72.21 Aligned_cols=65 Identities=25% Similarity=0.350 Sum_probs=51.3
Q ss_pred cHHHHHHHHHHHhc-CCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHH
Q 011751 15 IASVEKRLVEEVRK-NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 81 (478)
Q Consensus 15 ~~~~q~~~~~~l~~-~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~ 81 (478)
+.+.|++++..... ....+|.||+|||||+.+..++..... .+.+|+++.|+-.++.++.+++..
T Consensus 190 LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~--~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVK--QGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp CCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEcCchHHHHHHHHHHHh
Confidence 45789988888664 558899999999999776666654432 356799999999999999998854
No 106
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.15 E-value=0.0025 Score=62.67 Aligned_cols=93 Identities=22% Similarity=0.127 Sum_probs=50.7
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCChhhhHH
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK 108 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~ 108 (478)
...++++|++|+||||++..++...........++-.-|.|..+..+...+....+.++ - .......+.....
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv----~---~~~~~~dp~~i~~ 172 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEV----F---GNPQEKDAIKLAK 172 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEE----E---CCTTCCCHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcE----E---ecCCCCCHHHHHH
Confidence 35789999999999988776665433221122233345677776666665555444321 0 1111112222222
Q ss_pred HHhhCcCcCCCcceEeeccc
Q 011751 109 EALLDPYLSRYSAIIVDEAH 128 (478)
Q Consensus 109 ~~l~~~~l~~~~~lIiDE~H 128 (478)
..+......+++++|||.+=
T Consensus 173 ~al~~a~~~~~DvVIIDTaG 192 (443)
T 3dm5_A 173 EGVDYFKSKGVDIIIVDTAG 192 (443)
T ss_dssp HHHHHHHHTTCSEEEEECCC
T ss_pred HHHHHHHhCCCCEEEEECCC
Confidence 22222223458999999984
No 107
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.15 E-value=0.0013 Score=59.09 Aligned_cols=29 Identities=24% Similarity=0.432 Sum_probs=24.1
Q ss_pred HHhcCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 25 EVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 25 ~l~~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
-+..|+.+++.||+||||||++..++...
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999988777543
No 108
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.12 E-value=0.0011 Score=63.19 Aligned_cols=90 Identities=17% Similarity=0.175 Sum_probs=54.2
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCc-CCCEEEEEEe
Q 011751 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVE-LGQRVGYSIR 96 (478)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~-~~~~vg~~~~ 96 (478)
+.+.+...+..|+.++|+|||||||||++..++-.... ....+.+--+. . .... ....+++..+
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~--~~g~i~i~~~~-e------------~~~~~~~~~i~~~~g 224 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK--EERIISIEDTE-E------------IVFKHHKNYTQLFFG 224 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT--TSCEEEEESSC-C------------CCCSSCSSEEEEECB
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcEEEECCee-c------------cccccchhEEEEEeC
Confidence 45667778889999999999999999988776644322 22334443221 1 0111 2244544321
Q ss_pred ecccCChhhhHHHHhhCcCcCCCcceEeeccc
Q 011751 97 FDDRTSTSTRIKEALLDPYLSRYSAIIVDEAH 128 (478)
Q Consensus 97 ~~~~~~~~~~~~~~l~~~~l~~~~~lIiDE~H 128 (478)
...+.+..+...+..+.+++++||+-
T Consensus 225 ------gg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 225 ------GNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp ------TTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred ------CChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 22333344444566789999999984
No 109
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.07 E-value=0.0024 Score=59.98 Aligned_cols=107 Identities=21% Similarity=0.220 Sum_probs=53.8
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEE-ecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCChhhhH
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGV-TQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRI 107 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~-~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~ 107 (478)
++.++++||+||||||++..++...... +++..++ .-+.+..+.++.+.+.+..+... . ............
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~-g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~------~-~~~s~~~~~~v~ 175 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDE-GKSVVLAAADTFRAAAIEQLKIWGERVGATV------I-SHSEGADPAAVA 175 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEECTTCHHHHHHHHHHHHHHTCEE------E-CCSTTCCHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhc-CCEEEEEccccccHHHHHHHHHHHHHcCCcE------E-ecCCccCHHHHH
Confidence 4578999999999998887776543322 2222222 33455444433333334333321 1 111111111111
Q ss_pred HHHhhCcCcCCCcceEeecccccchhhhHHHHHHHHH
Q 011751 108 KEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKV 144 (478)
Q Consensus 108 ~~~l~~~~l~~~~~lIiDE~H~r~~~~~~~l~~l~~~ 144 (478)
...+......+++++|+|++- +....+.++..++.+
T Consensus 176 ~~al~~a~~~~~dvvIiDtpg-~~~~~~~l~~eL~~l 211 (306)
T 1vma_A 176 FDAVAHALARNKDVVIIDTAG-RLHTKKNLMEELRKV 211 (306)
T ss_dssp HHHHHHHHHTTCSEEEEEECC-CCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEECCC-chhhHHHHHHHHHHH
Confidence 122222345678999999985 233344444445444
No 110
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.02 E-value=0.0019 Score=66.77 Aligned_cols=73 Identities=15% Similarity=0.218 Sum_probs=56.9
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhC
Q 011751 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (478)
Q Consensus 12 ~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (478)
.+.+.++|+.++..+...+..++.++-|+|||+++..++.......++..++++.|++..+......+.....
T Consensus 161 ~~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~ 233 (592)
T 3cpe_A 161 KVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (592)
T ss_dssp BCCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred cCcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHH
Confidence 4567899999999886778899999999999977665554433334466899999999999888877665543
No 111
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.02 E-value=0.0031 Score=61.05 Aligned_cols=71 Identities=15% Similarity=0.236 Sum_probs=54.9
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHH
Q 011751 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (478)
Q Consensus 12 ~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~ 82 (478)
.+.+.++|+.++..+...+.+++..+-+.|||+++..+++.......+..++++.|++..+..+.+.+...
T Consensus 161 p~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~m 231 (385)
T 2o0j_A 161 KVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQA 231 (385)
T ss_dssp ECCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 46789999999998877788999999999999776555544333345668999999999988777665443
No 112
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.01 E-value=0.0011 Score=69.02 Aligned_cols=66 Identities=18% Similarity=0.343 Sum_probs=53.0
Q ss_pred cHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHH
Q 011751 15 IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 81 (478)
Q Consensus 15 ~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~ 81 (478)
+.+.|.+++..+..+..++|.||+|+|||+++..++.... ...+.+++++.|+..++.+..+++.+
T Consensus 181 ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~-~~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 181 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLA-RQGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHH-TSSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHH-HcCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 5678999999988888999999999999977665554322 11356799999999999999888754
No 113
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.92 E-value=0.0025 Score=59.65 Aligned_cols=87 Identities=29% Similarity=0.334 Sum_probs=46.4
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEE--ecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCChhh
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGV--TQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTST 105 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~--~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 105 (478)
.++.++++||+|+||||++..++...... .|.++.+ .-+.+..+.+....+.+..+.... .... ..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~-~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~----------~~~~-~~ 171 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLE-KHKKIAFITTDTYRIAAVEQLKTYAELLQAPLE----------VCYT-KE 171 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCC----------BCSS-HH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCEEEEEecCcccchHHHHHHHHHHhcCCCeE----------ecCC-HH
Confidence 46789999999999998887776544321 2333333 334444444333333333332210 0011 12
Q ss_pred hHHHHhhCcCcCCCcceEeeccc
Q 011751 106 RIKEALLDPYLSRYSAIIVDEAH 128 (478)
Q Consensus 106 ~~~~~l~~~~l~~~~~lIiDE~H 128 (478)
.+...+. .+.+++++|+|.+-
T Consensus 172 ~l~~al~--~~~~~dlvIiDT~G 192 (296)
T 2px0_A 172 EFQQAKE--LFSEYDHVFVDTAG 192 (296)
T ss_dssp HHHHHHH--HGGGSSEEEEECCC
T ss_pred HHHHHHH--HhcCCCEEEEeCCC
Confidence 2333333 23678999999663
No 114
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.92 E-value=0.0013 Score=62.99 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=33.2
Q ss_pred cCChhhhHHHHhhCcCcCCCcceEeecc--cccchhhhHHHHHHHHHHHh
Q 011751 100 RTSTSTRIKEALLDPYLSRYSAIIVDEA--HERTVHTDVLLGLLKKVQNA 147 (478)
Q Consensus 100 ~~~~~~~~~~~l~~~~l~~~~~lIiDE~--H~r~~~~~~~l~~l~~~~~~ 147 (478)
..|...+.+..+...+..+.+++++||. .........++.+++++...
T Consensus 163 ~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~ 212 (366)
T 3tui_C 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR 212 (366)
T ss_dssp TSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHh
Confidence 3455566666666677889999999995 33455566777777776543
No 115
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.88 E-value=0.0032 Score=59.00 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcC
Q 011751 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAG 54 (478)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~ 54 (478)
+....+...+..|+.++|.||+|+||||++..++....
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34556666678999999999999999999887776543
No 116
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.85 E-value=0.0048 Score=58.59 Aligned_cols=37 Identities=24% Similarity=0.200 Sum_probs=24.7
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecc
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 67 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p 67 (478)
+..+++.||+|+|||+++..+....... +..++++..
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~ 73 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSA 73 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEH
Confidence 3589999999999998887666433211 334555543
No 117
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.84 E-value=0.0048 Score=58.53 Aligned_cols=94 Identities=17% Similarity=0.173 Sum_probs=47.3
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEe-cchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCChhhh
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT-QPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTR 106 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~-~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 106 (478)
.+..+.++||+||||||++..+....... ++...+.- .+.+..+..+...+....+.. +..+.....+..+.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~-~g~V~l~g~D~~r~~a~eql~~~~~~~gv~------~v~q~~~~~p~~~v 200 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH-GFSVVIAASDTFRAGAIEQLEEHAKRIGVK------VIKHSYGADPAAVA 200 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEECCSSTTHHHHHHHHHHHTTCE------EECCCTTCCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCEEEEEeecccccchHHHHHHHHHHcCce------EEeccccCCHHHHH
Confidence 46789999999999999987776543222 23333332 333333434344344443321 12122222222222
Q ss_pred HHHHhhCcCcCCCcceEeecccc
Q 011751 107 IKEALLDPYLSRYSAIIVDEAHE 129 (478)
Q Consensus 107 ~~~~l~~~~l~~~~~lIiDE~H~ 129 (478)
...+ ......+.+++++|.+-.
T Consensus 201 ~e~l-~~~~~~~~d~vliDtaG~ 222 (328)
T 3e70_C 201 YDAI-QHAKARGIDVVLIDTAGR 222 (328)
T ss_dssp HHHH-HHHHHHTCSEEEEEECCS
T ss_pred HHHH-HHHHhccchhhHHhhccc
Confidence 2211 111224578889998753
No 118
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.81 E-value=0.0036 Score=54.86 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
+.+++.||+|+|||+++..+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 789999999999998876655433
No 119
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.80 E-value=0.0021 Score=68.69 Aligned_cols=66 Identities=18% Similarity=0.343 Sum_probs=52.9
Q ss_pred cHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHH
Q 011751 15 IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 81 (478)
Q Consensus 15 ~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~ 81 (478)
+.+.|.+++..+..+..++|.||+|+|||+++..++.... ...+.+++++.|+..++.+..+++.+
T Consensus 357 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~-~~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 357 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLA-RQGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHH-TTCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHH-HcCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 5678999999988889999999999999977665554322 11356799999999999999888754
No 120
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.80 E-value=0.0015 Score=69.91 Aligned_cols=66 Identities=24% Similarity=0.354 Sum_probs=52.7
Q ss_pred cHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHH
Q 011751 15 IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 81 (478)
Q Consensus 15 ~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~ 81 (478)
+.+.|.+++..+..+..++|.||+|||||+++...+..... ..+.+++++.|+..++.++.+++.+
T Consensus 361 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~-~~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 361 LNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSK-IHKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHH-HHCCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHh-CCCCeEEEEcCcHHHHHHHHHHHHh
Confidence 46889999999988889999999999999776555532211 1255799999999999999998865
No 121
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.79 E-value=0.0088 Score=55.92 Aligned_cols=93 Identities=23% Similarity=0.246 Sum_probs=47.3
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcE-EEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCChhhh
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKL-IGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTR 106 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~-i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 106 (478)
.++.+.++|++|+||||++..+....... ++.. ++-..+.+..+..+...+....+..+ + .......+...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~-~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~---~----~~~~~~~p~~l 168 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAADTQRPAAREQLRLLGEKVGVPV---L----EVMDGESPESI 168 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEEECCSSCHHHHHHHHHHHHHHTCCE---E----ECCTTCCHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEecCCcccHhHHHHHHHhcccCCeEE---E----EcCCCCCHHHH
Confidence 35688899999999998877666543322 2222 22233444444333333334333221 1 01111122222
Q ss_pred HHHHhhCcCcCCCcceEeeccc
Q 011751 107 IKEALLDPYLSRYSAIIVDEAH 128 (478)
Q Consensus 107 ~~~~l~~~~l~~~~~lIiDE~H 128 (478)
....+......+++++|+||.-
T Consensus 169 ~~~~l~~~~~~~~D~viiDtpp 190 (295)
T 1ls1_A 169 RRRVEEKARLEARDLILVDTAG 190 (295)
T ss_dssp HHHHHHHHHHHTCCEEEEECCC
T ss_pred HHHHHHHHHhCCCCEEEEeCCC
Confidence 2333332223578999999984
No 122
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.75 E-value=0.0021 Score=61.77 Aligned_cols=28 Identities=32% Similarity=0.475 Sum_probs=22.5
Q ss_pred HHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 25 EVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 25 ~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
....+..++|+|||||||||++..++-.
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3456779999999999999998766543
No 123
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.72 E-value=0.0053 Score=57.02 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=21.1
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
..++.+++.||+|+|||+++..+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 35678999999999999888666544
No 124
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.69 E-value=0.00076 Score=60.05 Aligned_cols=27 Identities=26% Similarity=0.149 Sum_probs=23.6
Q ss_pred HHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 25 EVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 25 ~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
-+..|+.+++.||+||||||++..++.
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 355789999999999999999888877
No 125
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.68 E-value=0.014 Score=52.14 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcCC---EEEEEcCCCCcHHhHHHHHHhh
Q 011751 16 ASVEKRLVEEVRKND---ILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 16 ~~~q~~~~~~l~~~~---~~~i~apTGsGKT~~~~~~~~~ 52 (478)
....+.+...+..++ .+++.||+|+|||+++..+...
T Consensus 29 ~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 29 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp HHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345556666676666 7999999999999888766543
No 126
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.67 E-value=0.0015 Score=56.85 Aligned_cols=40 Identities=28% Similarity=0.291 Sum_probs=30.3
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchH
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRR 69 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~ 69 (478)
.|+..+++||.||||||.+...+.+... .+.+++++.|..
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~--~g~kV~v~k~~~ 46 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKI--AKQKIQVFKPEI 46 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEEEC-
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH--CCCEEEEEEecc
Confidence 4678899999999999888877766532 256788887774
No 127
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.62 E-value=0.0065 Score=58.15 Aligned_cols=48 Identities=19% Similarity=0.211 Sum_probs=32.4
Q ss_pred ccCChhhhHHHHhhCcCcCCCcceEeecc--cccchhhhHHHHHHHHHHH
Q 011751 99 DRTSTSTRIKEALLDPYLSRYSAIIVDEA--HERTVHTDVLLGLLKKVQN 146 (478)
Q Consensus 99 ~~~~~~~~~~~~l~~~~l~~~~~lIiDE~--H~r~~~~~~~l~~l~~~~~ 146 (478)
...|...+.+..+...++.+.+++++||- .........+...++++..
T Consensus 144 ~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 193 (355)
T 1z47_A 144 HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHD 193 (355)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 34566667777777778889999999994 3344444555666666544
No 128
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.61 E-value=0.0074 Score=54.15 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=20.1
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
.+..+++.||+|+|||+++..+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999988866554
No 129
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.57 E-value=0.0028 Score=62.17 Aligned_cols=45 Identities=22% Similarity=0.313 Sum_probs=34.9
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHH
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVA 80 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~ 80 (478)
.+..+|.|+.|||||+.+...+.. ...+++.|++.++....+++.
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~~-------~~~lVlTpT~~aa~~l~~kl~ 205 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVNF-------EEDLILVPGRQAAEMIRRRAN 205 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCCT-------TTCEEEESCHHHHHHHHHHHT
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcc-------CCeEEEeCCHHHHHHHHHHhh
Confidence 357889999999999888655421 246888999999988877763
No 130
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.57 E-value=0.0017 Score=57.38 Aligned_cols=39 Identities=28% Similarity=0.347 Sum_probs=31.8
Q ss_pred CcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 14 PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 14 ~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
|...-+..++..+.+|+.+.|+||+||||||++..+.-.
T Consensus 7 pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 7 PKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred cCCHhHHHHHHhccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 333446678888999999999999999999998776643
No 131
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.56 E-value=0.0049 Score=54.17 Aligned_cols=41 Identities=24% Similarity=0.184 Sum_probs=30.3
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHH
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRV 70 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~ 70 (478)
.|+..+++||-||||||.+...+.+.... +.+++++.|...
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~--g~kVli~k~~~d 67 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFA--KQHAIVFKPCID 67 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEECC--
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEeccC
Confidence 46677899999999998888877665432 567888888764
No 132
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.52 E-value=0.011 Score=57.35 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHhHHHHHHhhc
Q 011751 31 ILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.++|+||+|+|||+++..+....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999887766443
No 133
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.51 E-value=0.011 Score=51.99 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhcC--CEEEEEcCCCCcHHhHHHHHHh
Q 011751 16 ASVEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 16 ~~~q~~~~~~l~~~--~~~~i~apTGsGKT~~~~~~~~ 51 (478)
....+++...+..+ ..+++.||+|+|||+++..+..
T Consensus 23 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 23 DEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 34555566666555 3599999999999988866553
No 134
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.47 E-value=0.001 Score=62.38 Aligned_cols=38 Identities=16% Similarity=0.290 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 16 ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 16 ~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.++.+.+...+.+|+.+.|+||+||||||++..++-..
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34566677778899999999999999999987766443
No 135
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.38 E-value=0.017 Score=54.04 Aligned_cols=26 Identities=38% Similarity=0.629 Sum_probs=21.5
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.|+.+.++||+||||||++..+....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46689999999999999988776543
No 136
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.35 E-value=0.011 Score=55.58 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=18.0
Q ss_pred CCEEEEEcCCCCcHHhHHHHHH
Q 011751 29 NDILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~ 50 (478)
+.++++.||+|+|||+++..+.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3479999999999998876544
No 137
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.30 E-value=0.016 Score=57.48 Aligned_cols=39 Identities=21% Similarity=0.073 Sum_probs=25.0
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecc
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 67 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p 67 (478)
...+++.||+|+|||+++..+.........+..++++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 358999999999999888665543321112334555543
No 138
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.28 E-value=0.014 Score=59.28 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.+.++++||+|+|||+++..++...
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3689999999999998887666554
No 139
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.28 E-value=0.071 Score=50.60 Aligned_cols=40 Identities=20% Similarity=0.335 Sum_probs=30.6
Q ss_pred CcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 14 PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 14 ~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
+-....+++...+..++.++|.||.|+|||+++..++...
T Consensus 16 gR~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 16 DREEESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp SCHHHHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHHc
Confidence 3344556666667678999999999999999998776553
No 140
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.21 E-value=0.017 Score=54.21 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=21.8
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
..++.+++.||+|+|||+++..+....
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 356789999999999998887666543
No 141
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.20 E-value=0.011 Score=61.05 Aligned_cols=59 Identities=17% Similarity=0.272 Sum_probs=46.7
Q ss_pred cHHHHHHHHHHHhc--CCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHH
Q 011751 15 IASVEKRLVEEVRK--NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKR 78 (478)
Q Consensus 15 ~~~~q~~~~~~l~~--~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~ 78 (478)
++.-|.+++..+.. ....+++|+-|.|||+++..++.... + .++++.|+...+....+.
T Consensus 176 ~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~----~-~~~vtAP~~~a~~~l~~~ 236 (671)
T 2zpa_A 176 PQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA----G-RAIVTAPAKASTDVLAQF 236 (671)
T ss_dssp CCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS----S-CEEEECSSCCSCHHHHHH
T ss_pred CCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH----h-CcEEECCCHHHHHHHHHH
Confidence 45678999988876 55789999999999999988887653 1 368999999888765554
No 142
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.20 E-value=0.0052 Score=64.39 Aligned_cols=70 Identities=19% Similarity=0.172 Sum_probs=51.9
Q ss_pred CcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCcc--CCCcEEEEecchHHHHHHHHHHHHHHhCC
Q 011751 14 PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC--RDGKLIGVTQPRRVAAVTVAKRVAEESGV 85 (478)
Q Consensus 14 ~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~--~~~~~i~~~~p~~~l~~~~~~~~~~~~~~ 85 (478)
.+.+.|++++. ..+..++|.|+.|||||+++-.-+...... .+...++++.+++.++.++.+++.+..+.
T Consensus 9 ~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~ 80 (647)
T 3lfu_A 9 SLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT 80 (647)
T ss_dssp TCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCS
T ss_pred cCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhcc
Confidence 46788999987 346789999999999997665444322211 12357999999999999999998877654
No 143
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.20 E-value=0.013 Score=53.50 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=19.9
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
..+.+++.||+|+|||+++..+...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999888666543
No 144
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.18 E-value=0.0018 Score=54.45 Aligned_cols=36 Identities=28% Similarity=0.275 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
....+...+..|+.+.+.||+||||||++..++-..
T Consensus 22 ~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 22 AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 334444445889999999999999999987776543
No 145
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.16 E-value=0.01 Score=57.48 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=20.6
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+..++++||+|+|||+++..+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999888766644
No 146
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.15 E-value=0.025 Score=54.18 Aligned_cols=26 Identities=38% Similarity=0.629 Sum_probs=21.4
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.|+.+.++||+||||||++..+....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 45689999999999999987776543
No 147
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.13 E-value=0.021 Score=49.87 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHhHHHHHHhh
Q 011751 31 ILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~~ 52 (478)
..+++|++|||||+.+...+..
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6789999999999877665444
No 148
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.13 E-value=0.0058 Score=56.37 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=19.1
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhh
Q 011751 30 DILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
..+++.||+|+|||+++..+...
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 57999999999999888666554
No 149
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.07 E-value=0.0041 Score=53.79 Aligned_cols=39 Identities=23% Similarity=0.177 Sum_probs=30.0
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecch
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPR 68 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~ 68 (478)
.++-.++.||.||||||.+...+.+.... +.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~--~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA--QYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT--TCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEccc
Confidence 57788999999999998887877665443 4567777666
No 150
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.07 E-value=9.1e-05 Score=67.95 Aligned_cols=51 Identities=25% Similarity=0.341 Sum_probs=33.5
Q ss_pred CCchhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
|+.+++.+..+.|+-.++.+.+...+.+|+.+.|.||+||||||++..+.-
T Consensus 13 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 334444445555543223333444567899999999999999999987663
No 151
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.05 E-value=0.0027 Score=58.30 Aligned_cols=34 Identities=29% Similarity=0.459 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+..+.+. +..|+.++|+|||||||||++..++-.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHh
Confidence 3445554 788999999999999999998776643
No 152
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.05 E-value=0.0001 Score=67.50 Aligned_cols=48 Identities=21% Similarity=0.184 Sum_probs=32.1
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
+++.+..+.|+-.++.+.+...+.+|+.+.|+||+||||||++..+.-
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 4 LEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 344444444433222333444567899999999999999999977664
No 153
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.04 E-value=0.003 Score=56.25 Aligned_cols=34 Identities=24% Similarity=0.253 Sum_probs=22.5
Q ss_pred HHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 19 EKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 19 q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+.+...+..|+.++|+||+||||||++..++-.
T Consensus 13 l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 13 GLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp ---------CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCceecCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3456677889999999999999999999877653
No 154
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.03 E-value=0.012 Score=55.72 Aligned_cols=25 Identities=36% Similarity=0.546 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
++.++++|++|+||||++..++...
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999998877666443
No 155
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.02 E-value=0.01 Score=57.45 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+..++|.||+|+|||+++..++..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999988776654
No 156
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.01 E-value=0.0044 Score=59.82 Aligned_cols=34 Identities=32% Similarity=0.524 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 20 KRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 20 ~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
+.+...+..|+.++|+|||||||||++..++-..
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 6677788999999999999999999998776543
No 157
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.01 E-value=0.0038 Score=55.08 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=21.8
Q ss_pred HHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 24 EEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 24 ~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
..+.+|+.+.|+||+||||||++..+.-
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999999977664
No 158
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.99 E-value=0.013 Score=55.55 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.+.+++.||+|+|||+++..+....
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4679999999999998886665543
No 159
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.98 E-value=0.013 Score=56.88 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+.+++.||+|+|||+++..+...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 567999999999999888666643
No 160
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.98 E-value=0.0096 Score=60.64 Aligned_cols=119 Identities=15% Similarity=0.094 Sum_probs=63.2
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHhhcCccCC----CcEEEEecchH-----HHHHHHHHHH----------HHHhCCcC
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRD----GKLIGVTQPRR-----VAAVTVAKRV----------AEESGVEL 87 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~----~~~i~~~~p~~-----~l~~~~~~~~----------~~~~~~~~ 87 (478)
..|+.+.|+||+||||||++..+.-......+ ...+.+++-.. ..+.+..... ....-..+
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPL 389 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc
Confidence 47899999999999999999887743321111 11222222110 0111111111 01111111
Q ss_pred CCEEEEEEeecccCChhhhHHHHhhCcCcCCCcceEeecc--cccchhhhHHHHHHHHHHH
Q 011751 88 GQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEA--HERTVHTDVLLGLLKKVQN 146 (478)
Q Consensus 88 ~~~vg~~~~~~~~~~~~~~~~~~l~~~~l~~~~~lIiDE~--H~r~~~~~~~l~~l~~~~~ 146 (478)
+.. ....+.....+...+.+..+...+..+.+++|+||- |........++.+++++..
T Consensus 390 ~l~-~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~ 449 (538)
T 1yqt_A 390 GII-DLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME 449 (538)
T ss_dssp TCG-GGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred CCh-hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 110 000112234566677777777777889999999994 4445555666667766643
No 161
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.95 E-value=0.00014 Score=65.98 Aligned_cols=49 Identities=14% Similarity=0.260 Sum_probs=32.8
Q ss_pred chhHHHhhhcCC--cHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 3 RQKILQQRKSLP--IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 3 ~~~~~~~~~~~~--~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
.+++.+..+.|+ -.++.+.+...+.+|+.+.|+||+||||||++..+.-
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 344444555553 1223333444567899999999999999999977653
No 162
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.95 E-value=0.023 Score=55.42 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+.+++.||+|+|||+++..+...
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 579999999999999888666544
No 163
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.94 E-value=0.019 Score=59.28 Aligned_cols=116 Identities=16% Similarity=0.125 Sum_probs=63.8
Q ss_pred HhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCC----CcEEEEecch---------HHHHHHH----------HHHHHHH
Q 011751 26 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD----GKLIGVTQPR---------RVAAVTV----------AKRVAEE 82 (478)
Q Consensus 26 l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~----~~~i~~~~p~---------~~l~~~~----------~~~~~~~ 82 (478)
+..|+.+.|.||+||||||++..+.-......+ ...+.+++-. ...+... ...+.+.
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~ 458 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKP 458 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 357899999999999999999887743221111 1122222111 1111110 0111122
Q ss_pred hCCcCCCEEEEEEeecccCChhhhHHHHhhCcCcCCCcceEeec--ccccchhhhHHHHHHHHHHH
Q 011751 83 SGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLLGLLKKVQN 146 (478)
Q Consensus 83 ~~~~~~~~vg~~~~~~~~~~~~~~~~~~l~~~~l~~~~~lIiDE--~H~r~~~~~~~l~~l~~~~~ 146 (478)
++.. . ...+.....+...+.+..+...+..+.+++++|| .|........++.+++++..
T Consensus 459 ~~l~--~---~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~ 519 (607)
T 3bk7_A 459 LGII--D---LYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME 519 (607)
T ss_dssp HTCT--T---TTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCc--h---HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH
Confidence 2221 0 0011223456677777777777888999999999 45455555666667766643
No 164
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.91 E-value=0.011 Score=60.08 Aligned_cols=120 Identities=14% Similarity=0.111 Sum_probs=61.9
Q ss_pred HhcCCEEEEEcCCCCcHHhHHHHHHhhcCccC-----CCcEEEEecch-----HHHHHHHHHHHH-----------HHhC
Q 011751 26 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-----DGKLIGVTQPR-----RVAAVTVAKRVA-----------EESG 84 (478)
Q Consensus 26 l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~-----~~~~i~~~~p~-----~~l~~~~~~~~~-----------~~~~ 84 (478)
+..|+.+.|+||+||||||++..+.-...... .+..+.+++.. ...+.+...... ...-
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l 370 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVT 370 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHH
Confidence 35789999999999999999987764322111 11223332211 111111111110 0000
Q ss_pred CcCCCEEEEEEeecccCChhhhHHHHhhCcCcCCCcceEeecc--cccchhhhHHHHHHHHHHH
Q 011751 85 VELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEA--HERTVHTDVLLGLLKKVQN 146 (478)
Q Consensus 85 ~~~~~~vg~~~~~~~~~~~~~~~~~~l~~~~l~~~~~lIiDE~--H~r~~~~~~~l~~l~~~~~ 146 (478)
..++.. ....+.....|...+.+..+...+..+.+++|+||- +........++.+++++..
T Consensus 371 ~~~~l~-~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~ 433 (538)
T 3ozx_A 371 KRLNLH-RLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTR 433 (538)
T ss_dssp TTTTGG-GCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHcCCH-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH
Confidence 000000 000012233466666677777777889999999994 3344444555666666544
No 165
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.89 E-value=0.00015 Score=70.09 Aligned_cols=51 Identities=22% Similarity=0.338 Sum_probs=36.6
Q ss_pred CCchhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
|+.+++.+..+.|+-....+.+...+.+|+.+.+.||+||||||++..+.-
T Consensus 1 M~~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 1 MASVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHc
Confidence 444555566666654444444555677999999999999999999988773
No 166
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.86 E-value=0.005 Score=52.96 Aligned_cols=26 Identities=15% Similarity=0.387 Sum_probs=22.1
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
..|+.++++||+||||||++..+...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 36789999999999999999877654
No 167
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.85 E-value=0.015 Score=54.24 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=21.0
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.++.+++.||+|+|||+++..+....
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 36799999999999998886665443
No 168
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.85 E-value=0.014 Score=56.24 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.+.+++.||+|+|||+++..++...
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 3579999999999998887666554
No 169
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.84 E-value=0.0018 Score=58.20 Aligned_cols=34 Identities=24% Similarity=0.230 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHH
Q 011751 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~ 50 (478)
..|..+...+..|+.++++||+||||||++..+.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3566666777899999999999999999987766
No 170
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.83 E-value=0.00014 Score=67.12 Aligned_cols=48 Identities=15% Similarity=0.231 Sum_probs=33.0
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
+++.+..+.|+-.++.+.+...+.+|+.+.|+||+||||||++..+.-
T Consensus 12 l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 12 LEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTS
T ss_pred EEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 344444444443333444455577899999999999999999977664
No 171
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.81 E-value=0.0066 Score=61.29 Aligned_cols=35 Identities=37% Similarity=0.418 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
.....+...+..|.+++|+|||||||||++..++.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGG
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHh
Confidence 34456677788999999999999999999876554
No 172
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.81 E-value=0.00014 Score=66.82 Aligned_cols=47 Identities=23% Similarity=0.244 Sum_probs=31.5
Q ss_pred hHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 5 ~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
++.+..+.|+-.++.+.+...+.+|+.+.|+||+||||||++..+.-
T Consensus 9 ~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 9 RTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp EEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhC
Confidence 33344444433223333445567999999999999999999977653
No 173
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.81 E-value=0.079 Score=51.91 Aligned_cols=92 Identities=24% Similarity=0.263 Sum_probs=47.3
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCChhhhHH
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK 108 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~ 108 (478)
++.++++|++|+||||++..++...........++-.-+.+..+.++...+....+..+ +. ... ...+.....
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v---~~---~~~-~~~p~~i~~ 170 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV---LE---VMD-GESPESIRR 170 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE---EE---CCT-TCCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccE---Ee---cCC-CCCHHHHHH
Confidence 45788899999999988877665443222222233344556555444344444444321 11 111 111222222
Q ss_pred HHhhCcCcCCCcceEeecc
Q 011751 109 EALLDPYLSRYSAIIVDEA 127 (478)
Q Consensus 109 ~~l~~~~l~~~~~lIiDE~ 127 (478)
..+......+++++|||=+
T Consensus 171 ~~l~~~~~~~~DvVIIDTa 189 (425)
T 2ffh_A 171 RVEEKARLEARDLILVDTA 189 (425)
T ss_dssp HHHHHHHHTTCSEEEEECC
T ss_pred HHHHHHHHCCCCEEEEcCC
Confidence 2322211357899999965
No 174
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.79 E-value=0.0051 Score=53.91 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=22.3
Q ss_pred HhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 26 VRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 26 l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+..|+.++++||+||||||++..+.-.
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 457899999999999999998776643
No 175
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.78 E-value=0.01 Score=52.72 Aligned_cols=41 Identities=22% Similarity=0.160 Sum_probs=31.8
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHH
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRV 70 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~ 70 (478)
.|+..+++|+-||||||.+...+.+... .+.+++++.|...
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~--~g~kvli~kp~~D 58 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQI--AQYKCLVIKYAKD 58 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT--TTCCEEEEEETTC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH--CCCeEEEEeecCC
Confidence 5788899999999999888777766543 2567888877754
No 176
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.76 E-value=0.0051 Score=55.95 Aligned_cols=51 Identities=24% Similarity=0.194 Sum_probs=31.1
Q ss_pred chhHHHh-hhcC-CcHHHHHHHHHHHhc---CCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 3 RQKILQQ-RKSL-PIASVEKRLVEEVRK---NDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 3 ~~~~~~~-~~~~-~~~~~q~~~~~~l~~---~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
++++.+. .+.| .-....+.+...+.. |+.++++|++||||||++..+....
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3455555 5556 445567777777778 9999999999999999987776543
No 177
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.70 E-value=0.026 Score=56.20 Aligned_cols=36 Identities=17% Similarity=0.318 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcC
Q 011751 19 EKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAG 54 (478)
Q Consensus 19 q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~ 54 (478)
..++..-+..|+.++|.|++|+|||+++..++....
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 334444456788999999999999999888877654
No 178
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.69 E-value=0.016 Score=54.13 Aligned_cols=93 Identities=19% Similarity=0.166 Sum_probs=47.4
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCChhhhHH
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK 108 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~ 108 (478)
++.++++|++|+||||++..++...........++-..+.+..+..+.+.+....+..+ + .......+...+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v---~----~~~~~~~p~~~~~ 170 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPV---Y----GEPGEKDVVGIAK 170 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCE---E----CCTTCCCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEE---E----ecCCCCCHHHHHH
Confidence 44788899999999988877665443221222233344455555444443444444321 0 0111112222222
Q ss_pred HHhhCcCcCCCcceEeeccc
Q 011751 109 EALLDPYLSRYSAIIVDEAH 128 (478)
Q Consensus 109 ~~l~~~~l~~~~~lIiDE~H 128 (478)
..+......+++++|||=+-
T Consensus 171 ~~l~~~~~~~~D~ViIDTpg 190 (297)
T 1j8m_F 171 RGVEKFLSEKMEIIIVDTAG 190 (297)
T ss_dssp HHHHHHHHTTCSEEEEECCC
T ss_pred HHHHHHHhCCCCEEEEeCCC
Confidence 23322122578999999864
No 179
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.68 E-value=0.051 Score=51.32 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcCC---EEEEEcCCCCcHHhHHHHHHhh
Q 011751 17 SVEKRLVEEVRKND---ILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 17 ~~q~~~~~~l~~~~---~~~i~apTGsGKT~~~~~~~~~ 52 (478)
...+.+...+..++ .+++.||+|+|||+++..+...
T Consensus 33 ~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 33 FDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp HHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 34445555555554 4677788999999888665433
No 180
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.67 E-value=0.003 Score=53.87 Aligned_cols=23 Identities=26% Similarity=0.616 Sum_probs=20.4
Q ss_pred HhcCCEEEEEcCCCCcHHhHHHH
Q 011751 26 VRKNDILIIVGETGSGKTTQLPQ 48 (478)
Q Consensus 26 l~~~~~~~i~apTGsGKT~~~~~ 48 (478)
+.+|+.++++||+||||||++..
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
Confidence 45788999999999999999985
No 181
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.66 E-value=0.0052 Score=53.77 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=19.8
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
.|+.++|+||+||||||++..+.-
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 578899999999999999987764
No 182
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.64 E-value=0.077 Score=51.03 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCC---EEEEEcCCCCcHHhHHHHHHhh
Q 011751 17 SVEKRLVEEVRKND---ILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 17 ~~q~~~~~~l~~~~---~~~i~apTGsGKT~~~~~~~~~ 52 (478)
...+.+...+..++ .+++.||+|+|||+++..+...
T Consensus 23 ~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 23 HVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp HHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34455556666665 4899999999999888766543
No 183
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.64 E-value=0.047 Score=52.21 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHhHHHHHHh
Q 011751 31 ILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~ 51 (478)
++++.||+|+||||++..+..
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999998876654
No 184
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.63 E-value=0.031 Score=52.72 Aligned_cols=35 Identities=31% Similarity=0.401 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhcCC--EEEEEcCCCCcHHhHHHHHHh
Q 011751 17 SVEKRLVEEVRKND--ILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 17 ~~q~~~~~~l~~~~--~~~i~apTGsGKT~~~~~~~~ 51 (478)
...+.+...+..++ ++++.||+|+|||+++..+..
T Consensus 32 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~ 68 (327)
T 1iqp_A 32 HIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAR 68 (327)
T ss_dssp HHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 34445555566665 799999999999988865553
No 185
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.59 E-value=0.0056 Score=59.74 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=23.2
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHhhcC
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLFHAG 54 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~~~~ 54 (478)
..|+.+.|.||+||||||++.+++....
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~ 203 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQ 203 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhc
Confidence 3678999999999999999987765443
No 186
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.57 E-value=0.00029 Score=67.82 Aligned_cols=50 Identities=20% Similarity=0.300 Sum_probs=34.7
Q ss_pred CCchhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHH
Q 011751 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~ 50 (478)
|+.+++.+..+.|.-.++.+.+...+.+|+.+.+.||+||||||++..+.
T Consensus 1 m~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia 50 (362)
T 2it1_A 1 MVEIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIA 50 (362)
T ss_dssp CCCEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHh
Confidence 33344555555554333334444556789999999999999999998877
No 187
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.55 E-value=0.00022 Score=68.34 Aligned_cols=49 Identities=29% Similarity=0.325 Sum_probs=34.8
Q ss_pred chhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 3 ~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
++++.+..+.|+-.+..+.+...+.+|+.+.+.||+||||||++..+.-
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhc
Confidence 3445555555554444444555677899999999999999999987773
No 188
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.53 E-value=0.0048 Score=55.62 Aligned_cols=28 Identities=29% Similarity=0.489 Sum_probs=23.8
Q ss_pred HHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 24 EEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 24 ~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
..+.+|+.+.|+||+||||||++..+.-
T Consensus 26 l~i~~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 26 LNIKEGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3467899999999999999999977653
No 189
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.50 E-value=0.00025 Score=68.12 Aligned_cols=49 Identities=20% Similarity=0.321 Sum_probs=33.3
Q ss_pred chhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 3 ~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
.+++.+..+.|+-.+..+.+...+.+|+.+.+.||+||||||++..+.-
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHC
Confidence 3444444555543223334444567899999999999999999988773
No 190
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.49 E-value=0.047 Score=54.29 Aligned_cols=25 Identities=28% Similarity=0.479 Sum_probs=20.9
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.|..+.++|++||||||++..+...
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH
Confidence 4668999999999999998777644
No 191
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.47 E-value=0.036 Score=52.74 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=18.8
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhh
Q 011751 30 DILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.++++.||+|+|||+++..+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 58999999999999888665433
No 192
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.45 E-value=0.0054 Score=53.09 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=22.9
Q ss_pred HHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 25 EVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 25 ~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+.+|+.++++||+||||||++..+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3567889999999999999998776543
No 193
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.44 E-value=0.00029 Score=68.02 Aligned_cols=49 Identities=22% Similarity=0.337 Sum_probs=34.0
Q ss_pred chhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 3 ~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
.+++.+..+.|+-.+..+.+...+.+|+.+.+.||+||||||++..+.-
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHc
Confidence 3444455555543333334445567899999999999999999987763
No 194
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.087 Score=54.26 Aligned_cols=48 Identities=8% Similarity=0.009 Sum_probs=33.2
Q ss_pred ccCChhhhHHHHhhCcCcCCCcceEeecc--cccchhhhHHHHHHHHHHH
Q 011751 99 DRTSTSTRIKEALLDPYLSRYSAIIVDEA--HERTVHTDVLLGLLKKVQN 146 (478)
Q Consensus 99 ~~~~~~~~~~~~l~~~~l~~~~~lIiDE~--H~r~~~~~~~l~~l~~~~~ 146 (478)
...|...+.+..+...+..+.+++++||- +........++.+++++..
T Consensus 466 ~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~ 515 (608)
T 3j16_B 466 QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFIL 515 (608)
T ss_dssp SSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
Confidence 34566777777777778889999999994 3344444556666666643
No 195
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.40 E-value=0.035 Score=51.98 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=21.9
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.++.+.++||+||||||++..+....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999988777543
No 196
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.39 E-value=0.027 Score=53.30 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.+.+++.||+|+|||+++..+....
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 3789999999999998886665543
No 197
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.37 E-value=0.0088 Score=52.43 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=22.3
Q ss_pred HhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 26 VRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 26 l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+..|..++++||+||||||++..+...
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 567899999999999999998776543
No 198
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.36 E-value=0.0096 Score=52.97 Aligned_cols=28 Identities=18% Similarity=0.446 Sum_probs=22.0
Q ss_pred HHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 25 EVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 25 ~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
....|+.++|+||+||||||++..++-.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3568899999999999999999776644
No 199
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.35 E-value=0.0098 Score=52.43 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=22.2
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
..|+.++++||+||||||++..++..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 36889999999999999999877654
No 200
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.34 E-value=0.02 Score=54.43 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEec
Q 011751 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (478)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~ 66 (478)
+-..++..-+..|+.++|.|++|+|||+++..++..... .+..++++.
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fS 81 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFS 81 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEE
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEe
Confidence 344445545678899999999999999998888766543 244555543
No 201
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.33 E-value=0.0063 Score=54.43 Aligned_cols=47 Identities=26% Similarity=0.343 Sum_probs=31.0
Q ss_pred hHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 5 ~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
++.+..+.|+-.+..+.+...+.+|+.+.|+||+||||||++..+.-
T Consensus 6 ~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 6 RAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTT
T ss_pred EEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 33344444432222333444567899999999999999999977653
No 202
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.32 E-value=0.062 Score=51.08 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=22.6
Q ss_pred HHHHHhcCC---EEEEEcCCCCcHHhHHHHHHhh
Q 011751 22 LVEEVRKND---ILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 22 ~~~~l~~~~---~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+...+.+|+ .+++.||.|+|||+++..++..
T Consensus 14 l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~ 47 (334)
T 1a5t_A 14 LVASYQAGRGHHALLIQALPGMGDDALIYALSRY 47 (334)
T ss_dssp HHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHcCCcceeEEEECCCCchHHHHHHHHHHH
Confidence 344455655 4899999999999887766643
No 203
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.31 E-value=0.0003 Score=68.03 Aligned_cols=47 Identities=23% Similarity=0.442 Sum_probs=32.2
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHH
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~ 50 (478)
+++.+..+.|+-.+..+.+...+.+|+.+.+.||+||||||++..+.
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia 50 (372)
T 1g29_1 4 VRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIA 50 (372)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHH
Confidence 34444444453322333344456789999999999999999998877
No 204
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.30 E-value=0.0084 Score=51.79 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
++.++++||+||||||++..++-.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 467899999999999998777643
No 205
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.29 E-value=0.0068 Score=54.92 Aligned_cols=27 Identities=33% Similarity=0.644 Sum_probs=23.5
Q ss_pred HHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 25 EVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 25 ~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
-+..|+.++|.||+||||||++..++.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 467899999999999999999887763
No 206
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=95.29 E-value=0.05 Score=50.89 Aligned_cols=108 Identities=13% Similarity=0.011 Sum_probs=67.1
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccccccc----
Q 011751 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVT---- 328 (478)
Q Consensus 253 ~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvd---- 328 (478)
.+.++|||++..+..+-+..++... ++...-+.|.....+++. ++....+.+.|....-|+|
T Consensus 124 ~~~kVLIfsq~t~~LDilE~~l~~~---------~~~y~RlDG~~~~~~~k~-----~~~~~~i~Lltsag~~gin~~~~ 189 (328)
T 3hgt_A 124 YETETAIVCRPGRTMDLLEALLLGN---------KVHIKRYDGHSIKSAAAA-----NDFSCTVHLFSSEGINFTKYPIK 189 (328)
T ss_dssp SCEEEEEEECSTHHHHHHHHHHTTS---------SCEEEESSSCCC------------CCSEEEEEEESSCCCTTTSCCC
T ss_pred CCCEEEEEECChhHHHHHHHHHhcC---------CCceEeCCCCchhhhhhc-----ccCCceEEEEECCCCCCcCcccc
Confidence 4778999999998888888887653 788888888855433221 2344566555665566676
Q ss_pred -cCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhhcccCCCC-----CCeEEEecCHhhHhc
Q 011751 329 -IPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-----PGKCFRLYPENEFDK 391 (478)
Q Consensus 329 -ip~v~~VI~~g~~~~~~yd~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-----~G~~~~l~~~~~~~~ 391 (478)
.-..+.||- ||+..+. ....+|.+-|+.|.+ +=.+|+|++....++
T Consensus 190 nl~~aD~VI~--------~DsdwNp---------~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh 241 (328)
T 3hgt_A 190 SKARFDMLIC--------LDTTVDT---------SQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDH 241 (328)
T ss_dssp CCSCCSEEEE--------CSTTCCT---------TSHHHHHHHCCC---------CCEEEEEETTSHHH
T ss_pred cCCCCCEEEE--------ECCCCCC---------CChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHH
Confidence 456777776 8876542 223456555555543 446999998765555
No 207
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.26 E-value=0.0066 Score=56.07 Aligned_cols=49 Identities=18% Similarity=0.263 Sum_probs=34.2
Q ss_pred chhHHHhhhcCCcH-HHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 3 RQKILQQRKSLPIA-SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 3 ~~~~~~~~~~~~~~-~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
++++.+..+.|+-. ++.+.+...+.+|+.+.|+||+||||||++..+.-
T Consensus 7 ~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 34555555666421 23344445667899999999999999999987763
No 208
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.26 E-value=0.053 Score=53.83 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=28.5
Q ss_pred HhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEe
Q 011751 26 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT 65 (478)
Q Consensus 26 l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~ 65 (478)
+..|+.++|.|++|+|||+++..++....... +..++++
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~ 235 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIY 235 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEE
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEE
Confidence 55778999999999999998888877654322 3345554
No 209
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.24 E-value=0.00026 Score=68.01 Aligned_cols=50 Identities=20% Similarity=0.247 Sum_probs=33.7
Q ss_pred CCchhHHHhhhcCCcHH--HHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHH
Q 011751 1 MPRQKILQQRKSLPIAS--VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 1 ~~~~~~~~~~~~~~~~~--~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~ 50 (478)
|+++++.+..+.|+-.+ ..+.+...+.+|+.+.+.||+||||||++..+.
T Consensus 1 M~~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia 52 (353)
T 1oxx_K 1 MVRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIA 52 (353)
T ss_dssp CCCEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHH
T ss_pred CcEEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHh
Confidence 33344445555553322 223444556789999999999999999998876
No 210
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.21 E-value=0.014 Score=58.31 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.+.++++||+|+|||+++..+....
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3679999999999998886665443
No 211
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.21 E-value=0.02 Score=55.16 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=21.0
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
..+.+++.||+|+|||+++..+....
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 35789999999999998887665443
No 212
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.20 E-value=0.018 Score=60.47 Aligned_cols=69 Identities=20% Similarity=0.203 Sum_probs=50.6
Q ss_pred cHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCcc--CCCcEEEEecchHHHHHHHHHHHHHHhCC
Q 011751 15 IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC--RDGKLIGVTQPRRVAAVTVAKRVAEESGV 85 (478)
Q Consensus 15 ~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~--~~~~~i~~~~p~~~l~~~~~~~~~~~~~~ 85 (478)
+.+-|++++.. .+..++|.|+.|||||+++-.-+...... .+...++++.+++.++.++.+++.+..+.
T Consensus 3 L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~ 73 (673)
T 1uaa_A 3 LNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGR 73 (673)
T ss_dssp CCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCT
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCc
Confidence 56789998875 47789999999999996665433221111 12356899999999999999998877653
No 213
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.19 E-value=0.012 Score=51.21 Aligned_cols=26 Identities=19% Similarity=0.477 Sum_probs=22.3
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
..|+.++|+||+||||||++..++..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 47889999999999999998777644
No 214
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.18 E-value=0.015 Score=50.97 Aligned_cols=42 Identities=24% Similarity=0.171 Sum_probs=28.7
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHH
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRV 70 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~ 70 (478)
..|...+++||-||||||.+...+.+.... +.+++++.|...
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~--g~kvli~kp~~D 67 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYA--KQKVVVFKPAID 67 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHT--TCCEEEEEEC--
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHc--CCceEEEEeccC
Confidence 467889999999999998665555444322 456788877664
No 215
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.17 E-value=0.012 Score=51.39 Aligned_cols=35 Identities=23% Similarity=0.203 Sum_probs=22.5
Q ss_pred HHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 19 EKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 19 q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
-+.+...+..++.++++|++||||||++..+....
T Consensus 15 ~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 15 TENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 44556667789999999999999999987766543
No 216
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.16 E-value=0.16 Score=48.30 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
...+.+.. +.. ..++|.||.|+|||+++..+....
T Consensus 20 ~el~~L~~-l~~-~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 20 KEIEKLKG-LRA-PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp HHHHHHHH-TCS-SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHH-hcC-CcEEEECCCCCCHHHHHHHHHHhc
Confidence 44455555 444 799999999999999988777553
No 217
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.16 E-value=0.015 Score=57.70 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=23.7
Q ss_pred HHHHHHhcCC--EEEEEcCCCCcHHhHHHHHHhh
Q 011751 21 RLVEEVRKND--ILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 21 ~~~~~l~~~~--~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+...+..++ ++++.||+|+|||+++..+...
T Consensus 40 ~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 40 PLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp HHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHH
Confidence 3445566665 6999999999999888665544
No 218
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.13 E-value=0.033 Score=62.98 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 19 EKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 19 q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+.+...+..|+.+.|+||+||||||++..++-.
T Consensus 434 L~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 434 LRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp EEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred eeceEEeecCCcEEEEEecCCCcHHHHHHHhccc
Confidence 3444455678999999999999999999777643
No 219
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.13 E-value=0.0068 Score=53.69 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=24.3
Q ss_pred HHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 23 VEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 23 ~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
...+.+|+.+.|.||+||||||++..+.-
T Consensus 29 sl~i~~Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 29 TMTIEKGNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp EEEEETTCCEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34567899999999999999999987663
No 220
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.12 E-value=0.0079 Score=53.96 Aligned_cols=30 Identities=27% Similarity=0.479 Sum_probs=24.8
Q ss_pred HHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 22 LVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 22 ~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
+...+.+|+.+.|+||+||||||++..+.-
T Consensus 27 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 27 INFKIERGQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 344567899999999999999999977654
No 221
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.08 E-value=0.017 Score=56.01 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=20.2
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
..+-+++.||+|+|||+++..++.+.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 34789999999999997775555443
No 222
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.06 E-value=0.02 Score=56.16 Aligned_cols=27 Identities=41% Similarity=0.561 Sum_probs=22.0
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
..+..++|+|||||||||++..++-..
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 456789999999999999987766543
No 223
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.05 E-value=0.018 Score=54.21 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=21.6
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
..+..+.|+||+||||||++..+...
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56778999999999999998766543
No 224
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.04 E-value=0.0086 Score=54.92 Aligned_cols=47 Identities=30% Similarity=0.426 Sum_probs=31.2
Q ss_pred hHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 5 ~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
++.+..+.|+-.++.+.+...+..|+.+.|+||+||||||++..+.-
T Consensus 8 ~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 8 HVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 33344444432223333444567899999999999999999977653
No 225
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.04 E-value=0.0084 Score=54.22 Aligned_cols=30 Identities=30% Similarity=0.493 Sum_probs=24.7
Q ss_pred HHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 22 LVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 22 ~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
+...+.+|+.+.|+||+||||||++..+.-
T Consensus 25 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 25 IDLKVPRGQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 334567899999999999999999977654
No 226
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.04 E-value=0.0084 Score=54.45 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=24.6
Q ss_pred HHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 23 VEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 23 ~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
...+.+|+.+.|+||+||||||++..+.-.
T Consensus 29 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 29 NLSIKQGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 344678999999999999999999776543
No 227
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.01 E-value=0.0099 Score=54.67 Aligned_cols=31 Identities=29% Similarity=0.403 Sum_probs=25.3
Q ss_pred HHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 22 LVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 22 ~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+...+.+|+.+.|+||+||||||++..+.-.
T Consensus 39 vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 39 LSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3345678999999999999999999776643
No 228
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.99 E-value=0.0091 Score=54.73 Aligned_cols=47 Identities=28% Similarity=0.469 Sum_probs=31.0
Q ss_pred hHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 5 ~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
++.+..+.|+-.++.+.+...+.+|+.+.|+||+||||||++..+.-
T Consensus 26 ~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 26 DVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHc
Confidence 33344444432222333444567899999999999999999977653
No 229
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=94.98 E-value=0.025 Score=59.92 Aligned_cols=69 Identities=22% Similarity=0.121 Sum_probs=50.4
Q ss_pred CcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCcc--CCCcEEEEecchHHHHHHHHHHHHHHhC
Q 011751 14 PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC--RDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (478)
Q Consensus 14 ~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~--~~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (478)
.+.+.|++++.. .+..++|.|+.|||||+++-.-+...... .+...++++..|+.++.++.+++.+..+
T Consensus 11 ~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 11 HLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLG 81 (724)
T ss_dssp TSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred hCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhc
Confidence 467889998876 45689999999999996654433322111 1234688999999999999998877654
No 230
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.98 E-value=0.005 Score=58.82 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=25.0
Q ss_pred HHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 20 KRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 20 ~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
+.+...+..+..+.++||+||||||++..++-
T Consensus 46 ~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 46 DAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 33444456788999999999999999987764
No 231
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.97 E-value=0.011 Score=58.88 Aligned_cols=42 Identities=19% Similarity=0.190 Sum_probs=31.7
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
+++.+..+.|+ .+...+..|+.+.|+||+||||||++..++-
T Consensus 119 i~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 119 KYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp HHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHH
T ss_pred hhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 44555444442 5667778999999999999999999877654
No 232
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.91 E-value=0.0097 Score=54.07 Aligned_cols=28 Identities=43% Similarity=0.627 Sum_probs=23.6
Q ss_pred HHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 25 EVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 25 ~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+..|+.+.|+||+||||||++..+.-.
T Consensus 22 ~i~~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 22 EVRAGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4568999999999999999999776543
No 233
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.90 E-value=0.0098 Score=54.47 Aligned_cols=31 Identities=26% Similarity=0.263 Sum_probs=25.3
Q ss_pred HHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 22 LVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 22 ~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+...+.+|+.+.|+||+||||||++..+.-.
T Consensus 39 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 39 INFFIPSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3445678999999999999999999776543
No 234
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.90 E-value=0.029 Score=63.50 Aligned_cols=34 Identities=29% Similarity=0.376 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
+.+.+...+..|+.+.|+|+|||||||++..+.-
T Consensus 1094 VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTT
T ss_pred cccceeEEECCCCEEEEECCCCChHHHHHHHHhc
Confidence 3445555677899999999999999999977763
No 235
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.89 E-value=0.02 Score=47.15 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=22.9
Q ss_pred HHHHHHHhcCCEEEEEcCCCCcHHhHHHHHH
Q 011751 20 KRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 20 ~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~ 50 (478)
+.+-.....+.++++.||+|+|||+++..+.
T Consensus 15 ~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~ 45 (145)
T 3n70_A 15 RRLQQLSETDIAVWLYGAPGTGRMTGARYLH 45 (145)
T ss_dssp HHHHHHTTCCSCEEEESSTTSSHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEECCCCCCHHHHHHHHH
Confidence 3333344677899999999999997775543
No 236
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.87 E-value=0.0087 Score=54.24 Aligned_cols=30 Identities=27% Similarity=0.414 Sum_probs=24.7
Q ss_pred HHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 22 LVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 22 ~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
+...+.+|+.+.|+||+||||||++..+.-
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 21 ISFEAQPNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEECTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 334567899999999999999999977654
No 237
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.86 E-value=0.26 Score=49.33 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHhHHHHHHhhc
Q 011751 31 ILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.++++|++|+||||++..++...
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68889999999999987777544
No 238
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.86 E-value=0.01 Score=54.96 Aligned_cols=31 Identities=32% Similarity=0.417 Sum_probs=25.2
Q ss_pred HHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 21 RLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 21 ~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
.+...+.+|+.+.|+||+||||||++..+.-
T Consensus 39 ~isl~i~~Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 39 KISWQIAKGDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3444567899999999999999999977653
No 239
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.83 E-value=0.013 Score=51.68 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=20.0
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHH
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~ 50 (478)
..|..+.|+||+||||||++..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~ 43 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLA 43 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 357789999999999999986554
No 240
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.81 E-value=0.011 Score=54.01 Aligned_cols=30 Identities=40% Similarity=0.593 Sum_probs=24.8
Q ss_pred HHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 22 LVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 22 ~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
+...+.+|+.+.|.||+||||||++..+.-
T Consensus 24 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 24 LNFDLNKGDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp EEEEEETTCEEEEECCSSSSHHHHHHHHTT
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 344567899999999999999999977654
No 241
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.81 E-value=0.011 Score=54.58 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=25.4
Q ss_pred HHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 21 RLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 21 ~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
.+...+..|+.+.|+||+||||||++..+.-
T Consensus 37 ~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 37 GLTFTLYPGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3444567899999999999999999977654
No 242
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.80 E-value=0.059 Score=54.05 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=20.1
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
....+++.||+|+|||+++..+...
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHH
Confidence 4578999999999999888666444
No 243
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.77 E-value=0.03 Score=63.04 Aligned_cols=70 Identities=17% Similarity=0.156 Sum_probs=51.0
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCcc----CCCcEEEEecchHHHHHHHHHHHHHHh
Q 011751 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC----RDGKLIGVTQPRRVAAVTVAKRVAEES 83 (478)
Q Consensus 12 ~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~----~~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (478)
....++-|++++.. .+++++|.|..|||||+++-.-+...... .+...++++.+|+.++..+.+++....
T Consensus 8 ~~~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 8 DSTWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp --CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 34567889999876 38899999999999997765443332221 123479999999999999998876643
No 244
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.77 E-value=0.024 Score=53.29 Aligned_cols=26 Identities=19% Similarity=0.132 Sum_probs=21.3
Q ss_pred HhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 26 VRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 26 l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
+..|..+.|.||+||||||++..+..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 45678899999999999999866543
No 245
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.76 E-value=0.013 Score=53.01 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=22.2
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
....+...+..|..+.|.||+||||||++..+..
T Consensus 14 ~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp ---------CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred eecceeccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4556667788899999999999999999876654
No 246
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.75 E-value=0.011 Score=54.27 Aligned_cols=30 Identities=30% Similarity=0.438 Sum_probs=24.7
Q ss_pred HHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 22 LVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 22 ~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
+...+.+|+.+.|+||+||||||++..+.-
T Consensus 26 vsl~i~~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 26 VSLVINEGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 334567899999999999999999977653
No 247
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.74 E-value=0.053 Score=51.07 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=19.4
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
...++++||+|+|||+++..+...
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999888665443
No 248
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.74 E-value=0.052 Score=53.82 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=20.8
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
..+.+++.||+|+|||+++..+....
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 34789999999999998887666543
No 249
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.72 E-value=0.019 Score=50.15 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=21.5
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
..|+.++++||+||||||++..+...
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999999998776543
No 250
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.71 E-value=0.019 Score=47.10 Aligned_cols=31 Identities=16% Similarity=0.290 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCcHHhHHHH
Q 011751 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQ 48 (478)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~ 48 (478)
..+.+......+.++++.||+|+|||+++..
T Consensus 16 l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~ 46 (143)
T 3co5_A 16 MNREVEAAAKRTSPVFLTGEAGSPFETVARY 46 (143)
T ss_dssp HHHHHHHHHTCSSCEEEEEETTCCHHHHHGG
T ss_pred HHHHHHHHhCCCCcEEEECCCCccHHHHHHH
Confidence 4444444556788999999999999977643
No 251
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.71 E-value=0.011 Score=52.82 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=23.8
Q ss_pred HHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 25 EVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 25 ~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
-+..|+.+.|+||+||||||++..++..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3557899999999999999999888753
No 252
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.67 E-value=0.061 Score=50.49 Aligned_cols=35 Identities=29% Similarity=0.394 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhcCC--EEEEEcCCCCcHHhHHHHHHh
Q 011751 17 SVEKRLVEEVRKND--ILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 17 ~~q~~~~~~l~~~~--~~~i~apTGsGKT~~~~~~~~ 51 (478)
...+.+...+..++ ++++.||+|+|||+++..+..
T Consensus 28 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~ 64 (323)
T 1sxj_B 28 ETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAH 64 (323)
T ss_dssp HHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 34445555565554 499999999999988765543
No 253
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.66 E-value=0.012 Score=56.84 Aligned_cols=27 Identities=33% Similarity=0.587 Sum_probs=23.2
Q ss_pred HhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 26 VRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 26 l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+..|+.++|+|||||||||++..++..
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 567889999999999999998777653
No 254
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.63 E-value=0.0098 Score=55.74 Aligned_cols=30 Identities=30% Similarity=0.418 Sum_probs=24.5
Q ss_pred HHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 22 LVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 22 ~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
+...+..|+.+.|+||+||||||++..+.-
T Consensus 73 isl~i~~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 73 VSFTVMPGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEEEECTTCEEEEESSSCHHHHHHHHHHTT
T ss_pred eeEEEcCCCEEEEECCCCchHHHHHHHHHc
Confidence 334567899999999999999999977653
No 255
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.63 E-value=0.02 Score=49.12 Aligned_cols=22 Identities=41% Similarity=0.607 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHhHHHHHHhh
Q 011751 31 ILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.++++||+||||||++..++-.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999998777643
No 256
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=94.61 E-value=0.085 Score=49.39 Aligned_cols=29 Identities=21% Similarity=0.169 Sum_probs=21.1
Q ss_pred HHHHHhcCC--EEEEEcCCCCcHHhHHHHHH
Q 011751 22 LVEEVRKND--ILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 22 ~~~~l~~~~--~~~i~apTGsGKT~~~~~~~ 50 (478)
+...+.+++ .+++.||.|+|||+.+..++
T Consensus 9 L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la 39 (305)
T 2gno_A 9 LKRIIEKSEGISILINGEDLSYPREVSLELP 39 (305)
T ss_dssp HHHHHHTCSSEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHHHHCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 344455554 78999999999998775544
No 257
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.60 E-value=0.059 Score=50.76 Aligned_cols=33 Identities=18% Similarity=0.149 Sum_probs=24.6
Q ss_pred HHHHHHHHhcCC------EEEEEcCCCCcHHhHHHHHHh
Q 011751 19 EKRLVEEVRKND------ILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 19 q~~~~~~l~~~~------~~~i~apTGsGKT~~~~~~~~ 51 (478)
...+...+..+. .+.|.||+||||||++..+..
T Consensus 76 l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 76 LQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 344555666665 799999999999999866543
No 258
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.56 E-value=0.027 Score=50.57 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=24.1
Q ss_pred HhcCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 26 VRKNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 26 l~~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
+..|+.+++.||+||||||++..++...
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4578999999999999999998887753
No 259
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.54 E-value=0.018 Score=50.71 Aligned_cols=25 Identities=36% Similarity=0.303 Sum_probs=20.5
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
..+..+.|+||+||||||++..+.-
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4677899999999999999866654
No 260
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.50 E-value=0.05 Score=55.27 Aligned_cols=96 Identities=14% Similarity=0.148 Sum_probs=51.6
Q ss_pred HHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCc------CCCEEEEEEeec
Q 011751 25 EVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVE------LGQRVGYSIRFD 98 (478)
Q Consensus 25 ~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~------~~~~vg~~~~~~ 98 (478)
.+..|..++|.||+||||||++.+++...... +..++++.+... ..+...+.. ..+.. .+ ...+.....
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~--G~~vi~~~~ee~-~~~l~~~~~-~~g~~~~~~~~~g-~~~~~~~~p 351 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACAN--KERAILFAYEES-RAQLLRNAY-SWGMDFEEMERQN-LLKIVCAYP 351 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEESSSC-HHHHHHHHH-TTSCCHHHHHHTT-SEEECCCCG
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC--CCCEEEEEEeCC-HHHHHHHHH-HcCCCHHHHHhCC-CEEEEEecc
Confidence 35688999999999999999988887554322 333434332211 112222211 11211 11 111111112
Q ss_pred ccCChhhhHHHHhhCcCcCCCcceEee
Q 011751 99 DRTSTSTRIKEALLDPYLSRYSAIIVD 125 (478)
Q Consensus 99 ~~~~~~~~~~~~l~~~~l~~~~~lIiD 125 (478)
...+.....+..+......+.+++|+|
T Consensus 352 ~~LS~g~~q~~~~a~~l~~~p~llilD 378 (525)
T 1tf7_A 352 ESAGLEDHLQIIKSEINDFKPARIAID 378 (525)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEc
Confidence 234555555555555556789999999
No 261
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.49 E-value=0.021 Score=54.43 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=28.0
Q ss_pred CCcHHHHHHHHHHHhcC-------CEEEEEcCCCCcHHhHHHHHHhh
Q 011751 13 LPIASVEKRLVEEVRKN-------DILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 13 ~~~~~~q~~~~~~l~~~-------~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+.-....+.+...+..+ +.+++.||+|+||||++..+...
T Consensus 28 ~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 28 IGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 33344555555555544 78999999999999998666543
No 262
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.36 E-value=0.015 Score=54.00 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=22.2
Q ss_pred HhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 26 VRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 26 l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
+.+|+.+.|+||+||||||++..+.-
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 45788999999999999999977653
No 263
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.35 E-value=0.029 Score=64.93 Aligned_cols=39 Identities=31% Similarity=0.255 Sum_probs=29.1
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecch
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPR 68 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~ 68 (478)
.++++++.||+|+|||+++-.++.+.... +..+.++...
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~--G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAE 1464 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEEcc
Confidence 58999999999999998887777665432 4455555544
No 264
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.32 E-value=0.056 Score=46.13 Aligned_cols=38 Identities=18% Similarity=0.355 Sum_probs=27.4
Q ss_pred cHHHHHHHHHHHhcC--CEEEEEcCCCCcHHhHHHHHHhh
Q 011751 15 IASVEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 15 ~~~~q~~~~~~l~~~--~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
-....+++...+..+ ..++++||+|+|||+++..++..
T Consensus 27 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 27 RDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 344555666666544 68999999999999888666543
No 265
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.32 E-value=0.023 Score=48.16 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=21.2
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.+..++++||+||||||++..+....
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999987766543
No 266
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.32 E-value=0.026 Score=49.24 Aligned_cols=31 Identities=23% Similarity=0.151 Sum_probs=24.1
Q ss_pred HHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 22 LVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 22 ~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+-.....|..++++||+||||||++..+...
T Consensus 18 ~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 18 QRLLDQKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp HHHHTSCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3334567889999999999999998666543
No 267
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.29 E-value=0.023 Score=49.16 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
|+.+.++||+||||||++..++-..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 5678999999999999987766543
No 268
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.26 E-value=0.019 Score=49.60 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=19.5
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHh
Q 011751 29 NDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
|+.++++||+||||||++..+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 45789999999999999987754
No 269
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.25 E-value=0.2 Score=49.27 Aligned_cols=91 Identities=24% Similarity=0.298 Sum_probs=46.5
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhcCcc-CCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCChhhhHH
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHAGFC-RDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK 108 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~~~~-~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~ 108 (478)
+.++++|++|+||||++..++...... .....++-.-|.+..+.++...+....+..+-. ......+...+.
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~-------~~~~~dp~~i~~ 173 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFP-------SDVGQKPVDIVN 173 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECC-------CCSSSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEe-------CCCCCCHHHHHH
Confidence 378889999999998877766544332 222233334455555544443344444432100 001112222222
Q ss_pred HHhhCcCcCCCcceEeecc
Q 011751 109 EALLDPYLSRYSAIIVDEA 127 (478)
Q Consensus 109 ~~l~~~~l~~~~~lIiDE~ 127 (478)
..+......+++++|||=+
T Consensus 174 ~~l~~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 174 AALKEAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHHHHHTTCSEEEEECC
T ss_pred HHHHHHHhCCCCEEEEECC
Confidence 2232212246899999986
No 270
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.24 E-value=0.023 Score=55.85 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=20.6
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
..+-+++.||+|+|||+++..++.+.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 55889999999999998775555444
No 271
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.18 E-value=0.025 Score=49.50 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=22.9
Q ss_pred HhcCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 26 VRKNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 26 l~~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
...++.++++||+||||||++..+....
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3567889999999999999987776543
No 272
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.16 E-value=0.02 Score=51.68 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=21.9
Q ss_pred HHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 25 EVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 25 ~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
.+.+ +.+.|.||+||||||++..+.-
T Consensus 21 ~i~~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 21 EMGR-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp EECS-SEEEEECCTTSSHHHHHHHHHT
T ss_pred EECC-EEEEEECCCCCCHHHHHHHHhC
Confidence 3457 8899999999999999987763
No 273
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.16 E-value=0.025 Score=48.09 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=20.2
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
+++.++++|++||||||++..+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999876654
No 274
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.03 E-value=0.042 Score=53.55 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.+-+++.||+|+|||+++..++.+.
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHHh
Confidence 4789999999999998775555444
No 275
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.02 E-value=0.049 Score=48.97 Aligned_cols=28 Identities=29% Similarity=0.658 Sum_probs=23.5
Q ss_pred HhcCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 26 VRKNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 26 l~~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
+..|+.++|.||+|||||+++.+++...
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999987776554
No 276
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.97 E-value=0.02 Score=52.37 Aligned_cols=28 Identities=43% Similarity=0.482 Sum_probs=23.1
Q ss_pred HHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 24 EEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 24 ~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
..+. |+.+.|.||+||||||++..+.-.
T Consensus 26 l~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 26 LEVN-GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEC-SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEC-CEEEEEECCCCCCHHHHHHHHhCC
Confidence 3456 899999999999999999776543
No 277
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.95 E-value=0.045 Score=53.94 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.+++++|++|+||||++..++...
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 378899999999998887766544
No 278
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.90 E-value=0.02 Score=54.70 Aligned_cols=29 Identities=31% Similarity=0.413 Sum_probs=24.5
Q ss_pred HHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 23 VEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 23 ~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
...+.+|+.+.+.||+||||||++..+.-
T Consensus 20 sl~i~~Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 20 SLKVESGEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp EEEECTTCEEEEECCCTHHHHHHHHHHHT
T ss_pred EEEEcCCCEEEEECCCCccHHHHHHHHHc
Confidence 34467899999999999999999988773
No 279
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.83 E-value=0.06 Score=45.75 Aligned_cols=37 Identities=19% Similarity=0.401 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhc--CCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 16 ASVEKRLVEEVRK--NDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 16 ~~~q~~~~~~l~~--~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
....+.+...+.. ..+++++||+|+|||+++..+...
T Consensus 28 ~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 28 DTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp HHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 3445555555544 568999999999999888766544
No 280
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.77 E-value=0.026 Score=54.77 Aligned_cols=32 Identities=31% Similarity=0.472 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 20 KRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 20 ~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
+.+...+.+|+.+.|.||+||||||++..+.-
T Consensus 38 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 38 ENISFSISPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred eceeEEEcCCCEEEEECCCCChHHHHHHHHhC
Confidence 33444567899999999999999999987763
No 281
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.75 E-value=0.042 Score=53.72 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=19.5
Q ss_pred CCEEEE--EcCCCCcHHhHHHHHHhh
Q 011751 29 NDILII--VGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 29 ~~~~~i--~apTGsGKT~~~~~~~~~ 52 (478)
+..++| +||+|+|||+++..+...
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~ 75 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKR 75 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHH
Confidence 457888 899999999988776643
No 282
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.62 E-value=0.066 Score=52.26 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhcCC--------------------EEEEEcCCCCcHHhHHHHHHh
Q 011751 17 SVEKRLVEEVRKND--------------------ILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 17 ~~q~~~~~~l~~~~--------------------~~~i~apTGsGKT~~~~~~~~ 51 (478)
...+.+...+.+|+ .+.++||+||||||++..+.-
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 34556667777888 999999999999999987664
No 283
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.54 E-value=0.032 Score=50.33 Aligned_cols=29 Identities=31% Similarity=0.627 Sum_probs=23.9
Q ss_pred HhcCCEEEEEcCCCCcHHhHHHHHHhhcC
Q 011751 26 VRKNDILIIVGETGSGKTTQLPQFLFHAG 54 (478)
Q Consensus 26 l~~~~~~~i~apTGsGKT~~~~~~~~~~~ 54 (478)
+..|..++|.|++|+|||+++.+++.+..
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~ 55 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34678999999999999998888776543
No 284
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.52 E-value=0.017 Score=55.25 Aligned_cols=47 Identities=15% Similarity=-0.008 Sum_probs=33.1
Q ss_pred hHHHhhhcCC-cHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 5 KILQQRKSLP-IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 5 ~~~~~~~~~~-~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+..+..+.|. -......+ ..+..|+.+.|.||+|+||||++..++-.
T Consensus 47 ~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 47 LRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred eecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3344445554 23444555 66789999999999999999998766654
No 285
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.52 E-value=0.0075 Score=62.24 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+..+.+...+.+|+.+.++||+||||||++..+.-.
T Consensus 357 ~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 357 PALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred cccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 455566667789999999999999999999776643
No 286
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.51 E-value=0.045 Score=49.48 Aligned_cols=25 Identities=32% Similarity=0.327 Sum_probs=21.2
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+..++|+||+||||||++..+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999777644
No 287
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.46 E-value=0.21 Score=54.00 Aligned_cols=36 Identities=19% Similarity=0.386 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhcC--CEEEEEcCCCCcHHhHHHHHHhh
Q 011751 17 SVEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 17 ~~q~~~~~~l~~~--~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.....++..+..+ .+++++||+|+|||+++..+...
T Consensus 177 ~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 177 EEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp HHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHH
Confidence 3444555555443 47999999999999888766643
No 288
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.43 E-value=0.047 Score=46.74 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.+.++++|++||||||+...+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999987766543
No 289
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.42 E-value=0.048 Score=46.83 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=20.5
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+..++++|++||||||++..+...
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999998776653
No 290
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.42 E-value=0.023 Score=56.20 Aligned_cols=49 Identities=14% Similarity=0.072 Sum_probs=35.1
Q ss_pred hhHHHhhhcCC-cHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 4 QKILQQRKSLP-IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 4 ~~~~~~~~~~~-~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
++..+..+.|+ -......+ ..+.+|+.+.|.||+||||||++..++-..
T Consensus 132 l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 132 LQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred eEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34444455554 23455556 778899999999999999999987666543
No 291
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.41 E-value=0.0082 Score=52.73 Aligned_cols=46 Identities=13% Similarity=0.149 Sum_probs=24.5
Q ss_pred CCchhHHHhhhcCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHH
Q 011751 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQF 49 (478)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~ 49 (478)
|+++++.+..+.++. +.... ..+..+..++++|++|+||||++..+
T Consensus 1 m~~l~~~~~~~~~~~-~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l 46 (210)
T 1pui_A 1 MTNLNYQQTHFVMSA-PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTL 46 (210)
T ss_dssp ----------CEEEE-SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTT
T ss_pred Ccchhhhhhhheeec-CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHH
Confidence 444566666666642 11112 34567788999999999999998443
No 292
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.40 E-value=0.032 Score=54.55 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=29.4
Q ss_pred hcCCcHHHHHHHHHHHhcCCE--EEEEcCCCCcHHhHHHHHHh
Q 011751 11 KSLPIASVEKRLVEEVRKNDI--LIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 11 ~~~~~~~~q~~~~~~l~~~~~--~~i~apTGsGKT~~~~~~~~ 51 (478)
+.|+-.+ .+.+...+..|.. +.|+||+||||||++..++-
T Consensus 23 ~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 23 VGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp C-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHT
T ss_pred EEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhC
Confidence 3344344 6677788899999 99999999999999977654
No 293
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.40 E-value=0.051 Score=46.17 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=20.9
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.+..++++|++||||||+...+....
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999987765543
No 294
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.39 E-value=0.044 Score=47.17 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=19.3
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhh
Q 011751 30 DILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+-++|+||+|+||||++..++..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999998776654
No 295
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.32 E-value=0.11 Score=55.21 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.+.+++.||+|+|||+++..++.+.
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3679999999999998887666544
No 296
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.22 E-value=0.045 Score=51.68 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=19.1
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
.++.++|+||||||||++...++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999988865554
No 297
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.15 E-value=0.051 Score=45.79 Aligned_cols=20 Identities=30% Similarity=0.566 Sum_probs=17.6
Q ss_pred CEEEEEcCCCCcHHhHHHHH
Q 011751 30 DILIIVGETGSGKTTQLPQF 49 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~ 49 (478)
..++++||+||||||++..+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36889999999999998777
No 298
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.13 E-value=0.041 Score=47.15 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=21.3
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.|..++++|++||||||++..+....
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999997776443
No 299
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.11 E-value=0.053 Score=45.63 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHhHHHHHHhhc
Q 011751 31 ILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.++++|+.||||||++..+....
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999997766543
No 300
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.08 E-value=0.045 Score=49.81 Aligned_cols=21 Identities=38% Similarity=0.363 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHhHHHHHHh
Q 011751 31 ILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~ 51 (478)
.++|+|||||||||++..++.
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999998866554
No 301
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.03 E-value=0.058 Score=49.02 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=22.6
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
..+..+.|+||+||||||++..+....
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999999997776543
No 302
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.02 E-value=0.05 Score=50.73 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=18.5
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHh
Q 011751 29 NDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
+..++|+||||||||+++..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 45788999999999988865543
No 303
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.01 E-value=0.035 Score=47.14 Aligned_cols=23 Identities=43% Similarity=0.521 Sum_probs=19.2
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhh
Q 011751 30 DILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+.+.|+|++||||||++..++..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999998776643
No 304
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.99 E-value=0.04 Score=50.87 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=23.7
Q ss_pred HHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 25 EVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 25 ~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
-+..|+.++|.||+||||||++..++.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 367899999999999999999887775
No 305
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.98 E-value=0.051 Score=47.05 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=19.3
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
.++-++|+||||+|||+++..++.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999988866554
No 306
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.94 E-value=0.041 Score=48.22 Aligned_cols=29 Identities=38% Similarity=0.269 Sum_probs=22.9
Q ss_pred HHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 23 VEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 23 ~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
++.+..+..+.|+|++||||||++..+..
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34455678899999999999999876554
No 307
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.94 E-value=0.03 Score=56.92 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=29.2
Q ss_pred HHHHHHHHH-HHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 16 ASVEKRLVE-EVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 16 ~~~q~~~~~-~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
.+....+.. .+..|+.++|+||+||||||++.++++
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll 61 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLY 61 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 345566666 777899999999999999999988643
No 308
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.89 E-value=0.061 Score=47.71 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
+..+.|+||+||||||++..+....
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999997776543
No 309
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.88 E-value=0.066 Score=46.30 Aligned_cols=29 Identities=38% Similarity=0.603 Sum_probs=23.5
Q ss_pred HHhcCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 25 EVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 25 ~l~~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.+..+..++++|++||||||++..+....
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 44567899999999999999987776543
No 310
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.87 E-value=0.065 Score=45.96 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=21.1
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+..++++|++||||||+...+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 5678999999999999998766554
No 311
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.87 E-value=0.066 Score=45.67 Aligned_cols=21 Identities=43% Similarity=0.616 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHhHHHHHHh
Q 011751 31 ILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~ 51 (478)
..+|+|||||||||++..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 789999999999998866544
No 312
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.83 E-value=0.24 Score=42.73 Aligned_cols=40 Identities=33% Similarity=0.316 Sum_probs=28.1
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchH
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRR 69 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~ 69 (478)
+...+++.+++|.||||.+.-..+...- .|.++++++-.+
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g--~G~rV~~vQF~K 66 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVG--HGKNVGVVQFIK 66 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHH--TTCCEEEEESSC
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEEeeC
Confidence 3457888888999999887666655432 256788876554
No 313
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.83 E-value=0.053 Score=47.96 Aligned_cols=30 Identities=27% Similarity=0.488 Sum_probs=24.0
Q ss_pred HHhcCCEEEEEcCCCCcHHhHHHHHHhhcC
Q 011751 25 EVRKNDILIIVGETGSGKTTQLPQFLFHAG 54 (478)
Q Consensus 25 ~l~~~~~~~i~apTGsGKT~~~~~~~~~~~ 54 (478)
.+...+.+++.||+||||+|++..+.....
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 345667889999999999999988776543
No 314
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=92.81 E-value=0.13 Score=54.71 Aligned_cols=78 Identities=10% Similarity=0.103 Sum_probs=65.5
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccc-cccccccCCe
Q 011751 254 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNI-AETSVTIPGI 332 (478)
Q Consensus 254 ~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~-~~~Gvdip~v 332 (478)
+.+++|.+|++.-+++.++.+.+.+... ++.+..+||+++..+|..+.+.+.+|..+|+|+|.. +...+++.++
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~-----gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l 491 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKF-----NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNL 491 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCS-----SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCC
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhc-----CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCC
Confidence 6789999999999999999998876432 577899999999999998888888899999999974 3345677888
Q ss_pred EEEE
Q 011751 333 KYVI 336 (478)
Q Consensus 333 ~~VI 336 (478)
.+||
T Consensus 492 ~lVV 495 (780)
T 1gm5_A 492 GLVI 495 (780)
T ss_dssp CEEE
T ss_pred ceEE
Confidence 8877
No 315
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.79 E-value=0.11 Score=45.28 Aligned_cols=24 Identities=38% Similarity=0.231 Sum_probs=19.5
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
.+..+.|+|++||||||++..+..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999998866543
No 316
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.68 E-value=0.073 Score=51.36 Aligned_cols=29 Identities=31% Similarity=0.349 Sum_probs=23.5
Q ss_pred HHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 23 VEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 23 ~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
...+..++.+++.||+||||||++..+..
T Consensus 163 ~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 163 VYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 33456788999999999999999876654
No 317
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.63 E-value=0.076 Score=50.09 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhh
Q 011751 30 DILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
..++|+|++||||||++..++..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 36899999999999999887754
No 318
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.63 E-value=0.064 Score=45.69 Aligned_cols=24 Identities=25% Similarity=0.265 Sum_probs=20.2
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
.|..++++|++||||||++..+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 577899999999999998866544
No 319
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.60 E-value=0.065 Score=45.65 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=21.4
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
..++.++++|++||||||++..+...
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 35678999999999999998766544
No 320
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.59 E-value=0.069 Score=44.15 Aligned_cols=21 Identities=43% Similarity=0.760 Sum_probs=17.2
Q ss_pred CEEEEEcCCCCcHHhHHHHHH
Q 011751 30 DILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~ 50 (478)
...+|+||||||||+++..+.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 478999999999998875543
No 321
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.57 E-value=0.13 Score=48.31 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=19.7
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
++++++.||+|+|||+++..+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999877655543
No 322
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.56 E-value=0.1 Score=44.95 Aligned_cols=28 Identities=36% Similarity=0.612 Sum_probs=23.0
Q ss_pred HhcCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 26 VRKNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 26 l~~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
...+..++++|++||||||++..+....
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999987776543
No 323
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.51 E-value=0.1 Score=48.78 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=24.3
Q ss_pred HHHHhcCCEEEEEcCCCCcHHhHHHHHH
Q 011751 23 VEEVRKNDILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 23 ~~~l~~~~~~~i~apTGsGKT~~~~~~~ 50 (478)
+..+..|+.+.++||+|+||||++..+.
T Consensus 159 L~~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 159 LVDYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHhhccCcEEEEECCCCCCHHHHHHHHH
Confidence 4456689999999999999999998877
No 324
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.50 E-value=0.064 Score=49.25 Aligned_cols=22 Identities=27% Similarity=0.560 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHhHHHHHHhh
Q 011751 31 ILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~~ 52 (478)
++.++||+||||||++..+.-.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999776643
No 325
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.49 E-value=0.21 Score=51.63 Aligned_cols=40 Identities=13% Similarity=0.214 Sum_probs=33.0
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 13 LPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 13 ~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+.-....+.+...+..++.+++.||+|+||||++..+...
T Consensus 44 ~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 44 IGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp CSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHT
T ss_pred ECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 4445667788888999999999999999999888776643
No 326
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.48 E-value=0.13 Score=48.81 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCCE--EEEEcCCCCcHHhHHHHHHh
Q 011751 16 ASVEKRLVEEVRKNDI--LIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 16 ~~~q~~~~~~l~~~~~--~~i~apTGsGKT~~~~~~~~ 51 (478)
....+.+...+..|+. +++.||+|+||||++..+..
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3455566667778876 99999999999988866554
No 327
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.44 E-value=0.078 Score=51.62 Aligned_cols=41 Identities=22% Similarity=0.378 Sum_probs=30.5
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHH
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRV 70 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~ 70 (478)
.+.+++|+||||||||+++..++..... .+..++++-|...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~--~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYM--QGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHH--CCCEEEEEeCCcC
Confidence 5778999999999999888777765432 2445777777654
No 328
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.41 E-value=0.083 Score=45.92 Aligned_cols=25 Identities=28% Similarity=0.394 Sum_probs=21.4
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+..++++|+.||||||++..+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999877654
No 329
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.40 E-value=0.075 Score=45.09 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=18.5
Q ss_pred CEEEEEcCCCCcHHhHHHHHHh
Q 011751 30 DILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~ 51 (478)
..++++|++||||||++..+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3688999999999999877654
No 330
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.39 E-value=0.068 Score=45.96 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=20.5
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+..++++|+.||||||++..+...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999998776544
No 331
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.27 E-value=0.068 Score=46.54 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
...++++|++||||||++..+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999998766544
No 332
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.14 E-value=0.12 Score=47.84 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=19.6
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+..++++||+||||||++..+...
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999998776543
No 333
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.11 E-value=0.094 Score=46.04 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
..+... ..+..+..++++|++||||||++..+..
T Consensus 14 ~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 14 RSERTE-LRNQRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp HHHHHH-HHTSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHhhc-ccCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 343433 4567888999999999999998876654
No 334
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=92.09 E-value=0.12 Score=48.96 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=29.8
Q ss_pred cHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 15 IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 15 ~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
-....+.+...+..+.++++.||+|+|||+++..+...
T Consensus 32 ~~~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 32 QKYMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp CHHHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34556667777788999999999999999888665543
No 335
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.08 E-value=0.076 Score=49.40 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=18.2
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhh
Q 011751 30 DILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
..++|+||||||||+++..++..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 46889999999999888555443
No 336
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.07 E-value=0.064 Score=54.52 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=23.9
Q ss_pred HHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 25 EVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 25 ~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
.+..|+.+.++||+||||||++..+.-
T Consensus 43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 43 VVKEGMVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHT
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 467999999999999999999987764
No 337
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=92.06 E-value=0.079 Score=52.40 Aligned_cols=43 Identities=21% Similarity=0.395 Sum_probs=31.5
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHH
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAA 72 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~ 72 (478)
...+++|.|+||||||+.+..++.+... .+..++++-|..+..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~--~g~~viv~Dpkge~~ 94 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLL--RGDRMVIVDPNGDML 94 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHH--TTCEEEEEEETTHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHH--CCCcEEEEeCCCchh
Confidence 4568999999999999877655544322 245788888887765
No 338
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.05 E-value=0.11 Score=49.55 Aligned_cols=29 Identities=24% Similarity=0.197 Sum_probs=24.1
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHhhcCc
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLFHAGF 55 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~~~~~ 55 (478)
..|+.++|.||+|||||+++..++.....
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~ 148 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQL 148 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 46788999999999999998888876433
No 339
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.04 E-value=0.063 Score=47.98 Aligned_cols=25 Identities=40% Similarity=0.481 Sum_probs=20.6
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
..|..+.+.|++||||||++..+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 4577899999999999999866543
No 340
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.02 E-value=0.079 Score=50.65 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=23.9
Q ss_pred HhcCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 26 VRKNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 26 l~~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
+..|+.+.|.||+||||||++.+++...
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3477899999999999999998888664
No 341
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.98 E-value=0.11 Score=46.23 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=21.0
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.....++++|++||||||++..+....
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999997776543
No 342
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=91.96 E-value=0.083 Score=45.44 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+..++++|++||||||++..+...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999998776544
No 343
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=91.90 E-value=0.12 Score=47.09 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=21.4
Q ss_pred HhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 26 VRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 26 l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
...+..+++.||+|+|||+++..+...
T Consensus 26 ~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 26 APLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp TTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred hCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 456789999999999999877655543
No 344
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=91.86 E-value=0.17 Score=45.92 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=19.7
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+.+++.||+|+|||+++..+...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 567999999999999888666543
No 345
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=91.84 E-value=0.16 Score=47.21 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
..++++.||+|+|||+++..+...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999888665543
No 346
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=91.84 E-value=0.039 Score=50.10 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=19.4
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
+.+++.||+||||||++..+....
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 459999999999999887665443
No 347
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=91.83 E-value=0.061 Score=55.37 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=25.1
Q ss_pred HHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 21 RLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 21 ~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
.+...+.+|+.+.++||+||||||++..+.-
T Consensus 361 ~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 361 NINLKIPAGKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp EEEEEECTTCEEEEEECTTSSHHHHHHHHTT
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 3344567899999999999999999977654
No 348
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.83 E-value=0.098 Score=45.85 Aligned_cols=24 Identities=38% Similarity=0.632 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHhHHHHHHhhcC
Q 011751 31 ILIIVGETGSGKTTQLPQFLFHAG 54 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~~~~ 54 (478)
.+++.||+||||+|++..+.....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578899999999999988876653
No 349
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.83 E-value=0.091 Score=45.03 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=20.8
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+..++++|++||||||++..+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999998776544
No 350
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.82 E-value=0.098 Score=45.53 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHhHHHHHHh
Q 011751 31 ILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~ 51 (478)
.++|+|++||||||++..+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 688999999999999876654
No 351
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.81 E-value=0.12 Score=46.52 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=21.4
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.+..++++||.||||||++..+....
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 55679999999999999998776543
No 352
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.75 E-value=0.15 Score=48.75 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=23.1
Q ss_pred HhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 26 VRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 26 l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
...|+.++++||+|+||||++..++-.
T Consensus 212 ~~~G~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 212 ALTGRISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp HHTTSEEEEECCTTSSHHHHHHHHHCC
T ss_pred hcCCCEEEEECCCCccHHHHHHHHhcc
Confidence 458999999999999999999777643
No 353
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=91.73 E-value=0.045 Score=52.36 Aligned_cols=39 Identities=26% Similarity=0.295 Sum_probs=27.6
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecc
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 67 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p 67 (478)
..|+.++|.||+||||||++..++...... +..++++..
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~ 97 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDA 97 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEES
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEec
Confidence 357889999999999999988877654322 334555443
No 354
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=91.68 E-value=0.3 Score=50.98 Aligned_cols=71 Identities=15% Similarity=0.155 Sum_probs=53.0
Q ss_pred hhcCCcHHHHHHHHHHH----hcCC-EEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhC
Q 011751 10 RKSLPIASVEKRLVEEV----RKND-ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (478)
Q Consensus 10 ~~~~~~~~~q~~~~~~l----~~~~-~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (478)
...|.+...|.+.+..+ ..|. ...+.|-||||||.++...+... ++.++++.|+..++.+....+..+++
T Consensus 8 ~~~~~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~~-----~~~~lvv~~~~~~A~~l~~el~~~~~ 82 (661)
T 2d7d_A 8 VSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEV-----NKPTLVIAHNKTLAGQLYSEFKEFFP 82 (661)
T ss_dssp CCSCCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH-----CCCEEEECSSHHHHHHHHHHHHHHCT
T ss_pred ecCCCCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHHHHh-----CCCEEEEECCHHHHHHHHHHHHHHcC
Confidence 44567777887666644 4453 57789999999997776655443 23588999999999999999988865
Q ss_pred C
Q 011751 85 V 85 (478)
Q Consensus 85 ~ 85 (478)
.
T Consensus 83 ~ 83 (661)
T 2d7d_A 83 N 83 (661)
T ss_dssp T
T ss_pred C
Confidence 3
No 355
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=91.66 E-value=0.16 Score=50.85 Aligned_cols=41 Identities=10% Similarity=0.136 Sum_probs=32.7
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 12 ~~~~~~~q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.++-....+.+...+..+.++++.||+|+|||+++..+...
T Consensus 24 ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 24 LYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp CSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGG
T ss_pred hHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHH
Confidence 34556677788888899999999999999999877655443
No 356
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.64 E-value=0.099 Score=45.61 Aligned_cols=21 Identities=43% Similarity=0.453 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHhHHHHHHh
Q 011751 31 ILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~ 51 (478)
.+.++||+||||||++..+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999877654
No 357
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.61 E-value=0.096 Score=45.73 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=22.0
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhcC
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHAG 54 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~~ 54 (478)
.+..+++.|+.||||||++..+.....
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 466789999999999999987765443
No 358
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=91.60 E-value=0.13 Score=48.68 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=23.8
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHhhcC
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLFHAG 54 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~~~~ 54 (478)
..|+.++|.||+|||||+++.+++....
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~ 132 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQ 132 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHh
Confidence 4678999999999999999888887643
No 359
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=91.55 E-value=0.19 Score=48.16 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=21.0
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.+.++++.||+|+|||+++..+....
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999998876665443
No 360
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.51 E-value=0.084 Score=50.85 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=23.1
Q ss_pred HHhc--CCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 25 EVRK--NDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 25 ~l~~--~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+.. ++.+.|+||+||||||++..+.-.
T Consensus 164 ~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 164 EARPFFAKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp TTGGGTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred HHHHhhhCeEEEECCCCCCHHHHHHHHHHH
Confidence 3456 889999999999999999776643
No 361
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=91.49 E-value=0.12 Score=48.66 Aligned_cols=45 Identities=11% Similarity=0.183 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEec
Q 011751 20 KRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (478)
Q Consensus 20 ~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~ 66 (478)
.+++--+..|+.++|.|++|+|||+++.+++...... +..++++.
T Consensus 59 D~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~--g~~vl~~s 103 (315)
T 3bh0_A 59 DRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHS 103 (315)
T ss_dssp HHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT--TCEEEEEE
T ss_pred HhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEE
Confidence 3344345678899999999999999988887665432 34555554
No 362
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.47 E-value=0.12 Score=45.26 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.2
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+..++++|+.||||||++..+...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999998777644
No 363
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.41 E-value=0.13 Score=43.12 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
++++++|+.||||||+...+....
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999987766543
No 364
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.39 E-value=0.12 Score=45.53 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=21.4
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.+..+++.|+.||||||++..+....
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999997776544
No 365
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=91.38 E-value=0.16 Score=47.46 Aligned_cols=39 Identities=18% Similarity=0.325 Sum_probs=27.0
Q ss_pred CcHHHHHHHHHHHhcC-----------CEEEEEcCCCCcHHhHHHHHHhh
Q 011751 14 PIASVEKRLVEEVRKN-----------DILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 14 ~~~~~q~~~~~~l~~~-----------~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.-....+.+...+..+ ..+++.||+|+|||+++..+...
T Consensus 21 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 21 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH
Confidence 4445555555555543 47999999999999888665543
No 366
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.37 E-value=0.064 Score=55.43 Aligned_cols=31 Identities=29% Similarity=0.450 Sum_probs=25.1
Q ss_pred HHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 21 RLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 21 ~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
.+...+.+|+.+.++||+||||||++..+.-
T Consensus 373 ~isl~i~~G~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 373 DITFHIKPGQKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp SEEEECCTTCEEEEECCTTSSTTHHHHHHTT
T ss_pred ceEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3444567899999999999999999977654
No 367
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.35 E-value=0.12 Score=45.53 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHhHHHHHHhhc
Q 011751 31 ILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.++++||+||||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999998776544
No 368
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.35 E-value=0.12 Score=45.33 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHhHHHHHHhhc
Q 011751 31 ILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.++++||.||||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999998776544
No 369
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.31 E-value=0.15 Score=47.69 Aligned_cols=29 Identities=28% Similarity=0.352 Sum_probs=23.7
Q ss_pred HHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 23 VEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 23 ~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
+..+..++.+.+.||+||||||++..+.-
T Consensus 163 lf~~l~geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 163 LKEYLKGKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp HHHHHSSSEEEEECSTTSSHHHHHHHHST
T ss_pred HHHHhcCCeEEEECCCCCcHHHHHHHhcc
Confidence 34556899999999999999999976653
No 370
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.29 E-value=0.12 Score=44.76 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHhHHHHHHhhc
Q 011751 31 ILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.+++.|+.||||||++..+....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 57899999999999997776543
No 371
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=91.25 E-value=0.068 Score=54.95 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=23.9
Q ss_pred HHHHHHhcCCEEEEEcCCCCcHHhHHHHHH
Q 011751 21 RLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 21 ~~~~~l~~~~~~~i~apTGsGKT~~~~~~~ 50 (478)
.+...+.+|+.+.++||+||||||++..+.
T Consensus 359 ~isl~i~~G~~~~ivG~sGsGKSTll~~l~ 388 (578)
T 4a82_A 359 DINLSIEKGETVAFVGMSGGGKSTLINLIP 388 (578)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHTTTT
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHh
Confidence 334456789999999999999999986544
No 372
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=91.21 E-value=0.1 Score=50.19 Aligned_cols=20 Identities=25% Similarity=0.546 Sum_probs=17.1
Q ss_pred EEEEEcCCCCcHHhHHHHHH
Q 011751 31 ILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~ 50 (478)
.++|+|||||||||++..+.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 67899999999999986554
No 373
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.21 E-value=0.13 Score=45.01 Aligned_cols=26 Identities=23% Similarity=0.463 Sum_probs=21.8
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
..+..++++|+.||||||++..+...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35778999999999999999877654
No 374
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.21 E-value=0.14 Score=44.53 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
+..++++|++||||||++..+....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999987776543
No 375
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.20 E-value=0.12 Score=44.31 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHhHHHHHHhh
Q 011751 31 ILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.++++|+.||||||++..+...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999998776654
No 376
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.17 E-value=0.13 Score=43.62 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhh
Q 011751 30 DILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
..++++|++||||||++..++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 57899999999999998777654
No 377
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.15 E-value=0.092 Score=54.08 Aligned_cols=28 Identities=32% Similarity=0.423 Sum_probs=23.8
Q ss_pred HHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 25 EVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 25 ~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+.+|+.+.++||+||||||++..+.-.
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcC
Confidence 3568999999999999999999877643
No 378
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=91.14 E-value=0.098 Score=49.98 Aligned_cols=28 Identities=29% Similarity=0.328 Sum_probs=23.5
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHhhcC
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLFHAG 54 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~~~~ 54 (478)
..|+.++|.||+||||||++.+++....
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3678999999999999999888776543
No 379
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=91.12 E-value=0.051 Score=50.12 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=19.3
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
+.+++.||+||||||++..+....
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCcChHHHHHHHHHHHc
Confidence 459999999999999887665443
No 380
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.12 E-value=0.11 Score=49.01 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=18.4
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhh
Q 011751 30 DILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
..++|+|||||||||++..+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 47899999999999888655443
No 381
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.12 E-value=0.11 Score=43.87 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHhHHHHHHhhc
Q 011751 31 ILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.++|+|++||||||+...+....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 68999999999999987766543
No 382
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.10 E-value=0.12 Score=48.57 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=18.3
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhh
Q 011751 30 DILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+.++|+|||||||||+...+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999888555443
No 383
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=91.06 E-value=0.065 Score=55.34 Aligned_cols=31 Identities=29% Similarity=0.444 Sum_probs=25.0
Q ss_pred HHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 22 LVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 22 ~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+...+.+|+.+.++||+||||||++..+.-.
T Consensus 363 isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 363 FSLSIPSGSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECTTCEEEEECCTTSSSTHHHHHHTTS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3444678999999999999999999776543
No 384
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.97 E-value=0.11 Score=45.89 Aligned_cols=26 Identities=27% Similarity=0.202 Sum_probs=21.2
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
....+++.|+.||||||++..+....
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678999999999999998776544
No 385
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.96 E-value=0.089 Score=54.24 Aligned_cols=28 Identities=32% Similarity=0.412 Sum_probs=24.1
Q ss_pred HHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 25 EVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 25 ~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+.+|+.+.|+||+||||||++..+.-.
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhCC
Confidence 4679999999999999999999776643
No 386
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=90.91 E-value=0.15 Score=43.04 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=19.2
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhh
Q 011751 30 DILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
..+.++|++||||||++..++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999988777654
No 387
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=90.88 E-value=0.12 Score=47.91 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=17.9
Q ss_pred CCEEEEEcCCCCcHHhHHHHHH
Q 011751 29 NDILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~ 50 (478)
+..+.|+||+||||||++..+.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3478899999999999885544
No 388
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=90.76 E-value=0.22 Score=49.90 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=21.0
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
..+.+++|.|+||||||+++..++.
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999988877664
No 389
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.74 E-value=0.27 Score=43.75 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=22.0
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.|..+++.|+.||||||++..+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67789999999999999997776544
No 390
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.65 E-value=0.13 Score=43.71 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=16.8
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.+..++++|+.||||||++..+....
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999987765443
No 391
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.62 E-value=0.11 Score=52.72 Aligned_cols=26 Identities=38% Similarity=0.491 Sum_probs=22.4
Q ss_pred HhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 26 VRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 26 l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
..+|+.+.++||+||||||++..+.-
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhc
Confidence 45789999999999999999977664
No 392
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.53 E-value=0.14 Score=43.09 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
+.++++|+.||||||++..+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999987766543
No 393
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.50 E-value=0.071 Score=54.93 Aligned_cols=29 Identities=31% Similarity=0.503 Sum_probs=23.8
Q ss_pred HHHHHhcCCEEEEEcCCCCcHHhHHHHHH
Q 011751 22 LVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 22 ~~~~l~~~~~~~i~apTGsGKT~~~~~~~ 50 (478)
+...+.+|+.+.++||+||||||++..+.
T Consensus 362 isl~i~~Ge~~~ivG~sGsGKSTll~~l~ 390 (587)
T 3qf4_A 362 VNFSVKPGSLVAVLGETGSGKSTLMNLIP 390 (587)
T ss_dssp EEEEECTTCEEEEECSSSSSHHHHHHTTT
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 33456789999999999999999986655
No 394
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=90.47 E-value=0.16 Score=46.75 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=18.9
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhh
Q 011751 30 DILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+.+++.||+||||||++..+...
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45999999999999988766544
No 395
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.46 E-value=0.082 Score=46.35 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHhHHHHHHhh
Q 011751 31 ILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.++++|+.||||||++..+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999776543
No 396
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=90.40 E-value=0.17 Score=43.98 Aligned_cols=24 Identities=25% Similarity=0.528 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
..++++|+.||||||++..+....
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999987766543
No 397
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.27 E-value=0.18 Score=44.40 Aligned_cols=25 Identities=36% Similarity=0.413 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
+..+++.|+.||||||++..+....
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999997776544
No 398
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=90.23 E-value=0.19 Score=47.30 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=23.0
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
..|+.++|.||+|+|||+++.+++...
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456889999999999999988888754
No 399
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=90.22 E-value=0.16 Score=43.44 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
..++++|++||||||++..+....
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999987766543
No 400
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=90.18 E-value=0.062 Score=51.24 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=21.9
Q ss_pred HhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 26 VRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 26 l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
...+..++++|++|+||||++..++..
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 345678999999999999998777643
No 401
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=90.17 E-value=0.072 Score=49.72 Aligned_cols=41 Identities=12% Similarity=-0.055 Sum_probs=28.6
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchH
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRR 69 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~ 69 (478)
.| .+.|.||+|+|||+++.+++........+..++++..-.
T Consensus 28 ~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 28 SG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp SE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred CC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 46 789999999999999888887654322244566655433
No 402
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=90.11 E-value=0.16 Score=43.24 Aligned_cols=24 Identities=29% Similarity=0.301 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
..++++|++||||||+...+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 458999999999999987766543
No 403
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.07 E-value=0.15 Score=49.28 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=17.0
Q ss_pred CEEEEEcCCCCcHHhHHHHHH
Q 011751 30 DILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~ 50 (478)
..++|+||||||||+++..++
T Consensus 3 ~~i~i~GptgsGKttla~~La 23 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLA 23 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHH
Confidence 467899999999998875544
No 404
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=90.07 E-value=0.93 Score=50.49 Aligned_cols=79 Identities=13% Similarity=0.182 Sum_probs=65.7
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEecc-ccccccccCC
Q 011751 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN-IAETSVTIPG 331 (478)
Q Consensus 253 ~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~-~~~~Gvdip~ 331 (478)
.+.+++|.+||+.-+++.++.+.+.+... ++.+..+++..+..++..+.+....|..+|+|+|. .+...+.+.+
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~-----~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~ 725 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANW-----PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKD 725 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTT-----TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSS
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcC-----CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccc
Confidence 36689999999999999999998875432 46788889999999998888888889999999995 5555688889
Q ss_pred eEEEE
Q 011751 332 IKYVI 336 (478)
Q Consensus 332 v~~VI 336 (478)
+.+||
T Consensus 726 l~lvI 730 (1151)
T 2eyq_A 726 LGLLI 730 (1151)
T ss_dssp EEEEE
T ss_pred cceEE
Confidence 98887
No 405
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=90.06 E-value=0.18 Score=44.02 Aligned_cols=22 Identities=41% Similarity=0.739 Sum_probs=17.7
Q ss_pred CCEEEEEcCCCCcHHhHHHHHH
Q 011751 29 NDILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~ 50 (478)
....+|+||||||||+++..+.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHH
Confidence 3578999999999998875543
No 406
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.05 E-value=0.17 Score=43.52 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHhHHHHHHhh
Q 011751 31 ILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+++.|+.||||||++..+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999776644
No 407
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.05 E-value=0.17 Score=44.47 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHhHHHHHHhhc
Q 011751 31 ILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.+++.|++||||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999997776544
No 408
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.01 E-value=0.19 Score=41.98 Aligned_cols=23 Identities=22% Similarity=0.145 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHhHHHHHHhhc
Q 011751 31 ILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.++++|+.||||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999987766543
No 409
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.00 E-value=0.18 Score=43.16 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHhHHHHHHhh
Q 011751 31 ILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.++++|+.||||||++..+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999998776543
No 410
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.99 E-value=0.2 Score=44.72 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=21.5
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.+..+++.|++||||||++..+....
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999997776554
No 411
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=89.88 E-value=0.17 Score=43.73 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=19.1
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhh
Q 011751 30 DILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
..++|+|++||||||+...+...
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 46889999999999998776554
No 412
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=89.72 E-value=0.19 Score=49.74 Aligned_cols=39 Identities=10% Similarity=0.172 Sum_probs=29.9
Q ss_pred HhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEec
Q 011751 26 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (478)
Q Consensus 26 l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~ 66 (478)
+..|..++|.|++|+|||+++.+++.+.... +..++++.
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fS 232 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHS 232 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEEC
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEE
Confidence 4567899999999999999988888766543 44566654
No 413
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=89.68 E-value=0.12 Score=46.83 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=19.4
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+..++++|++||||||++..+...
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999998766543
No 414
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=89.67 E-value=0.06 Score=50.35 Aligned_cols=27 Identities=19% Similarity=0.329 Sum_probs=22.8
Q ss_pred HHHhcCCEEEEEcCCCCcHHhHHHHHH
Q 011751 24 EEVRKNDILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 24 ~~l~~~~~~~i~apTGsGKT~~~~~~~ 50 (478)
..+.+|+.+.++||+|+||||++..++
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~ 194 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAIS 194 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHC
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhc
Confidence 345689999999999999999996654
No 415
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.65 E-value=0.19 Score=44.47 Aligned_cols=23 Identities=35% Similarity=0.309 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHhHHHHHHhhc
Q 011751 31 ILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.+++.|++||||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999998776543
No 416
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.64 E-value=0.2 Score=43.08 Aligned_cols=22 Identities=27% Similarity=0.681 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHhHHHHHHhh
Q 011751 31 ILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.++++|++|+||||++..+.-.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999999777654
No 417
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.64 E-value=0.21 Score=47.40 Aligned_cols=34 Identities=18% Similarity=0.319 Sum_probs=25.5
Q ss_pred HHHHHHHHHhcC--CEEEEEcCCCCcHHhHHHHHHh
Q 011751 18 VEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 18 ~q~~~~~~l~~~--~~~~i~apTGsGKT~~~~~~~~ 51 (478)
..+.+...+..+ .++++.||+|+|||+++..+..
T Consensus 45 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 45 AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 445566666666 5699999999999988865553
No 418
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=89.61 E-value=0.11 Score=54.44 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=20.5
Q ss_pred HHHhcCCEEEEEcCCCCcHHhHHH
Q 011751 24 EEVRKNDILIIVGETGSGKTTQLP 47 (478)
Q Consensus 24 ~~l~~~~~~~i~apTGsGKT~~~~ 47 (478)
..+..|+.+.|+||+||||||++.
T Consensus 343 l~I~~Ge~vaIiGpnGsGKSTLl~ 366 (670)
T 3ux8_A 343 VKIPLGTFVAVTGVSGSGKSTLVN 366 (670)
T ss_dssp EEEETTSEEEEECSTTSSHHHHHT
T ss_pred eEecCCCEEEEEeeCCCCHHHHHH
Confidence 345678999999999999999984
No 419
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=89.57 E-value=0.11 Score=54.40 Aligned_cols=23 Identities=26% Similarity=0.611 Sum_probs=20.2
Q ss_pred HHHhcCCEEEEEcCCCCcHHhHH
Q 011751 24 EEVRKNDILIIVGETGSGKTTQL 46 (478)
Q Consensus 24 ~~l~~~~~~~i~apTGsGKT~~~ 46 (478)
..+.+|+.+.|+||+||||||++
T Consensus 39 l~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 39 VEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEEETTSEEEEECSTTSSHHHHH
T ss_pred EEECCCCEEEEECCCCCCHHHHh
Confidence 34578999999999999999996
No 420
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.45 E-value=0.2 Score=44.14 Aligned_cols=23 Identities=35% Similarity=0.444 Sum_probs=18.9
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHh
Q 011751 29 NDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
+..++|+|+.||||||++..+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999998876643
No 421
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=89.37 E-value=0.17 Score=48.39 Aligned_cols=38 Identities=32% Similarity=0.247 Sum_probs=27.4
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEec
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~ 66 (478)
..|+.++|.|++|+|||+++..++...... +..++++.
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid 98 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFID 98 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEe
Confidence 367899999999999999988877654322 23444444
No 422
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=89.37 E-value=0.24 Score=46.24 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=20.7
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
..+.++++.||+|+|||+++..+...
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHh
Confidence 46778999999999999777655543
No 423
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.32 E-value=0.21 Score=43.12 Aligned_cols=22 Identities=27% Similarity=0.681 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHhHHHHHHhh
Q 011751 31 ILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.++++|++|+||||++..+.-.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999999777654
No 424
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=89.28 E-value=0.17 Score=43.11 Aligned_cols=21 Identities=19% Similarity=0.425 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHhHHHHHHhh
Q 011751 32 LIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 32 ~~i~apTGsGKT~~~~~~~~~ 52 (478)
++|+|++|||||+++..++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999887754
No 425
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=89.25 E-value=0.16 Score=50.45 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=21.0
Q ss_pred HhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 26 VRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 26 l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
+.. +.+.|+||+||||||++..+.-
T Consensus 27 i~~-e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 27 FDE-LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp CCS-SEEEEECCTTSSHHHHHHHHHH
T ss_pred Ecc-ceEEEECCCCCcHHHHHHHHhc
Confidence 445 7899999999999999877663
No 426
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=89.25 E-value=0.18 Score=43.79 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=16.5
Q ss_pred CEEEEEcCCCCcHHhHHHHH
Q 011751 30 DILIIVGETGSGKTTQLPQF 49 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~ 49 (478)
+.+++.||+|+|||+.+..+
T Consensus 59 n~ili~GPPGtGKTt~a~al 78 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSF 78 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46999999999999877433
No 427
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=89.24 E-value=0.15 Score=55.10 Aligned_cols=116 Identities=19% Similarity=0.138 Sum_probs=62.1
Q ss_pred HHHhcCCEEEEEcCCCCcHHhHHHHHHhhcC--ccC-CCcEEEEecch------HHHHH-----------HHHHHHHHHh
Q 011751 24 EEVRKNDILIIVGETGSGKTTQLPQFLFHAG--FCR-DGKLIGVTQPR------RVAAV-----------TVAKRVAEES 83 (478)
Q Consensus 24 ~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~--~~~-~~~~i~~~~p~------~~l~~-----------~~~~~~~~~~ 83 (478)
..+..|+.+.|+||+||||||++..+.--.. ... ....+.++... ...+. +....+.+.+
T Consensus 456 l~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~l 535 (986)
T 2iw3_A 456 LRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEF 535 (986)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHc
Confidence 3456899999999999999999988762111 100 11123333211 00010 1111122222
Q ss_pred CCcCCCEEEEEEeecccCChhhhHHHHhhCcCcCCCcceEeec--ccccchhhhHHHHHHHH
Q 011751 84 GVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLLGLLKK 143 (478)
Q Consensus 84 ~~~~~~~vg~~~~~~~~~~~~~~~~~~l~~~~l~~~~~lIiDE--~H~r~~~~~~~l~~l~~ 143 (478)
+... ....+.....+...+.+..+...++.+.+++++|| .|........+..++++
T Consensus 536 gL~~----~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~ 593 (986)
T 2iw3_A 536 GFTD----EMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT 593 (986)
T ss_dssp TCCH----HHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred CCCh----hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh
Confidence 2210 00001223456666777666677788899999999 45555555666666654
No 428
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=89.14 E-value=0.21 Score=45.50 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=19.7
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
...++++|++||||||++..+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 457899999999999998776643
No 429
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=89.10 E-value=0.41 Score=44.36 Aligned_cols=24 Identities=33% Similarity=0.288 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
..+++.||+|+|||+++..++...
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999998887666544
No 430
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.79 E-value=0.27 Score=57.03 Aligned_cols=93 Identities=25% Similarity=0.238 Sum_probs=52.9
Q ss_pred HHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHHHHHhCCcCCCEEEEEEeecccCCh-
Q 011751 25 EVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTST- 103 (478)
Q Consensus 25 ~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~- 103 (478)
-+..+++++++||+|||||+++.+++.+.... +..++++.-.... .+.. .+..+.++....-. +.+ ...
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~--Ge~~~Fit~ee~~-~~L~---a~~~G~dl~~l~~~--~pd--~~e~ 1146 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHAL-DPIY---ARKLGVDIDNLLCS--QPD--TGEQ 1146 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCC-CHHH---HHHTTCCTTTCEEE--CCS--SHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEccccH-HHHH---HHHcCCChhHheee--cCc--chHH
Confidence 35688999999999999999998888776543 4455555433222 2222 24455555443211 111 111
Q ss_pred hhhHHHHhhCcCcCCCcceEeecccc
Q 011751 104 STRIKEALLDPYLSRYSAIIVDEAHE 129 (478)
Q Consensus 104 ~~~~~~~l~~~~l~~~~~lIiDE~H~ 129 (478)
...+...+. ....+++|||||+-.
T Consensus 1147 ~~~i~~~l~--~~~~~dlvVIDsl~~ 1170 (2050)
T 3cmu_A 1147 ALEICDALA--RSGAVDVIVVDSVAA 1170 (2050)
T ss_dssp HHHHHHHHH--HHTCCSEEEESCGGG
T ss_pred HHHHHHHHH--HhCCCCEEEECCccc
Confidence 111222222 145689999999754
No 431
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=88.79 E-value=0.24 Score=47.48 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
+.+++.||+|+|||+++..+....
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999998887766554
No 432
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=88.78 E-value=2.8 Score=36.82 Aligned_cols=76 Identities=11% Similarity=0.111 Sum_probs=54.6
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEecccc------cc
Q 011751 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIA------ET 325 (478)
Q Consensus 252 ~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~------~~ 325 (478)
..+.++||.+|+++-++++++.+.+..... .++.+..++|+.+..++..... ..+|+|+|.-- ..
T Consensus 90 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~-----~~~Iiv~Tp~~l~~~~~~~ 160 (230)
T 2oxc_A 90 NLSTQILILAPTREIAVQIHSVITAIGIKM----EGLECHVFIGGTPLSQDKTRLK-----KCHIAVGSPGRIKQLIELD 160 (230)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTS----TTCCEEEECTTSCHHHHHHHTT-----SCSEEEECHHHHHHHHHTT
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHhccc----CCceEEEEeCCCCHHHHHHhcc-----CCCEEEECHHHHHHHHhcC
Confidence 346789999999999999999888763321 2567888899998877665543 36899999721 23
Q ss_pred ccccCCeEEEE
Q 011751 326 SVTIPGIKYVI 336 (478)
Q Consensus 326 Gvdip~v~~VI 336 (478)
.+++.++++||
T Consensus 161 ~~~~~~~~~lV 171 (230)
T 2oxc_A 161 YLNPGSIRLFI 171 (230)
T ss_dssp SSCGGGCCEEE
T ss_pred CcccccCCEEE
Confidence 45666777766
No 433
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=88.73 E-value=0.3 Score=46.63 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+..+.++|++|+||||++..++..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 457899999999999999887753
No 434
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=88.68 E-value=0.23 Score=47.25 Aligned_cols=21 Identities=38% Similarity=0.711 Sum_probs=17.3
Q ss_pred CCEEEEEcCCCCcHHhHHHHH
Q 011751 29 NDILIIVGETGSGKTTQLPQF 49 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~ 49 (478)
....+|+||||||||+++..+
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi 43 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAI 43 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 346789999999999988644
No 435
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=88.46 E-value=0.31 Score=43.45 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=20.6
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
....+.|.||+||||||++..+....
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44589999999999999987766443
No 436
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=88.46 E-value=0.31 Score=42.89 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=20.5
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
.|..+++.|+.||||||++..+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~ 25 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVE 25 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 578899999999999999876653
No 437
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=88.36 E-value=1.2 Score=47.18 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=19.2
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 30 DILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
+.+++.||+|+|||+++..++.+.
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~ 535 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHh
Confidence 568999999999997776665554
No 438
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=88.29 E-value=0.24 Score=47.69 Aligned_cols=21 Identities=38% Similarity=0.730 Sum_probs=17.5
Q ss_pred CEEEEEcCCCCcHHhHHHHHH
Q 011751 30 DILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~ 50 (478)
...+|+||||||||+++.-+.
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 578999999999998876554
No 439
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=88.26 E-value=0.28 Score=42.34 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=18.9
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhh
Q 011751 30 DILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
..+.++|+.||||||+...+...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35788999999999998776654
No 440
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.24 E-value=0.26 Score=43.30 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=20.8
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
..|..+++.|+.||||||++..+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 4678899999999999999977654
No 441
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.09 E-value=0.32 Score=43.44 Aligned_cols=28 Identities=25% Similarity=0.124 Sum_probs=22.0
Q ss_pred HhcCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 26 VRKNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 26 l~~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
...+..+.|+|++||||||++..+....
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4567789999999999999987765433
No 442
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=88.03 E-value=0.28 Score=52.23 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=21.3
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
..|+.++|+||+||||||++..+..
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHH
Confidence 3678999999999999999877654
No 443
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=88.02 E-value=0.19 Score=51.06 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=22.4
Q ss_pred HhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 26 VRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 26 l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+.+|..++++|++||||||++..+...
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHh
Confidence 457889999999999999988766543
No 444
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=87.92 E-value=0.25 Score=47.41 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=23.9
Q ss_pred HHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 22 LVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 22 ~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
+...+..|+.+.|.||+|+|||+++..+..
T Consensus 167 ~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 167 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp HHSCCBTTCEEEEECCSSSSHHHHHHHHHH
T ss_pred eeeeecCCcEEEEecCCCCChhHHHHHHHH
Confidence 333456899999999999999988876554
No 445
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=87.88 E-value=5 Score=34.26 Aligned_cols=76 Identities=8% Similarity=0.107 Sum_probs=52.8
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEecc-----cccc-c
Q 011751 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN-----IAET-S 326 (478)
Q Consensus 253 ~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~-----~~~~-G 326 (478)
.+.++||.+|+++-++++++.+.+..... ++..+..++|+.+..+...... +..+|+|+|. .+.. .
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~ 141 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHM----GGAKVMATTGGTNLRDDIMRLD----DTVHVVIATPGRILDLIKKGV 141 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTS----SSCCEEEECSSSCHHHHHHHTT----SCCSEEEECHHHHHHHHHTTC
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhc----CCceEEEEeCCccHHHHHHhcC----CCCCEEEeCHHHHHHHHHcCC
Confidence 45679999999999999998887764322 2566788899988765544332 3468999997 2222 3
Q ss_pred cccCCeEEEE
Q 011751 327 VTIPGIKYVI 336 (478)
Q Consensus 327 vdip~v~~VI 336 (478)
+++.++++||
T Consensus 142 ~~~~~~~~lV 151 (206)
T 1vec_A 142 AKVDHVQMIV 151 (206)
T ss_dssp SCCTTCCEEE
T ss_pred cCcccCCEEE
Confidence 4566777776
No 446
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=87.82 E-value=0.34 Score=43.31 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=21.4
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
..|..+++.|+.||||||++..+...
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999998776543
No 447
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=87.77 E-value=0.29 Score=41.15 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=20.1
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+..++++|++|+|||+++..+...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3557899999999999999777643
No 448
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=87.75 E-value=0.54 Score=46.82 Aligned_cols=36 Identities=25% Similarity=0.421 Sum_probs=25.9
Q ss_pred HHHHHHHHHH--hcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 17 SVEKRLVEEV--RKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 17 ~~q~~~~~~l--~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
...+.++..+ ....+++++||+|+|||+++..+...
T Consensus 187 ~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 187 KEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp HHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 3444556555 35568999999999999888665543
No 449
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=87.65 E-value=0.36 Score=42.51 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=22.3
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.|..+++.|+.||||||++..+....
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998776554
No 450
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=87.64 E-value=0.26 Score=43.76 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=18.7
Q ss_pred HhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 26 VRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 26 l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
...|..+++.|+.||||||++..+..
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999877654
No 451
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=87.58 E-value=0.26 Score=47.29 Aligned_cols=28 Identities=29% Similarity=0.290 Sum_probs=23.4
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHhhcC
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLFHAG 54 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~~~~ 54 (478)
..|+.++|.||+|+|||+++..++....
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~ 99 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQ 99 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHH
Confidence 4678999999999999988888776543
No 452
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=87.58 E-value=0.33 Score=40.36 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHhHHHHHHh
Q 011751 31 ILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~ 51 (478)
.++++|++|+|||+++..+.-
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 588999999999999977753
No 453
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=87.54 E-value=0.3 Score=51.67 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHh
Q 011751 29 NDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
|+.++|+||+||||||++..+..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iag 598 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTAL 598 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHh
Confidence 88999999999999999877664
No 454
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=87.52 E-value=3.3 Score=35.97 Aligned_cols=76 Identities=16% Similarity=0.181 Sum_probs=53.9
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccc-----c-cccc
Q 011751 254 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNI-----A-ETSV 327 (478)
Q Consensus 254 ~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~-----~-~~Gv 327 (478)
..++||.+|+++-++++++.+++..... ++..+..++|+.+..++...+ ..+..+|+|+|.- + ...+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~----~~~~v~~~~g~~~~~~~~~~~---~~~~~~i~v~T~~~l~~~~~~~~~ 154 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYM----PNVKVAVFFGGLSIKKDEEVL---KKNCPHIVVGTPGRILALARNKSL 154 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTS----TTCCEEEESCCSCHHHHHHHH---HHSCCSEEEECHHHHHHHHHTTSS
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhC----CCceEEEEeCCCChHHHHHHH---hcCCCCEEEeCHHHHHHHHHhCCC
Confidence 4589999999999999988887763321 256788889998876654433 2345689999962 1 2345
Q ss_pred ccCCeEEEE
Q 011751 328 TIPGIKYVI 336 (478)
Q Consensus 328 dip~v~~VI 336 (478)
++.++++||
T Consensus 155 ~~~~~~~lV 163 (220)
T 1t6n_A 155 NLKHIKHFI 163 (220)
T ss_dssp CCTTCCEEE
T ss_pred CcccCCEEE
Confidence 677888877
No 455
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=87.47 E-value=0.33 Score=47.76 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=21.3
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
..++.++|+||+|||||+++..+...
T Consensus 24 ~~~~~~~i~G~nG~GKstll~ai~~~ 49 (430)
T 1w1w_A 24 GESNFTSIIGPNGSGKSNMMDAISFV 49 (430)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 35789999999999999888766543
No 456
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=87.47 E-value=0.31 Score=49.54 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=21.3
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.+..+++.||+|+|||+++..+....
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 47899999999999998887665443
No 457
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=87.45 E-value=0.63 Score=45.28 Aligned_cols=79 Identities=8% Similarity=0.061 Sum_probs=61.3
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEeccccc----ccc
Q 011751 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAE----TSV 327 (478)
Q Consensus 252 ~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~----~Gv 327 (478)
..++++||.+|+++-+.++++.+.+... .++.+..+||+.+..++....+.+..|..+|+|+|+-.- .-+
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~------~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~ 135 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLAD------EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKL 135 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCC------SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHH
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHcc------CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHh
Confidence 4578899999999999999999988522 267899999999998877777777777789999997321 114
Q ss_pred ccCCeEEEE
Q 011751 328 TIPGIKYVI 336 (478)
Q Consensus 328 dip~v~~VI 336 (478)
+..++++||
T Consensus 136 ~~~~~~~iV 144 (414)
T 3oiy_A 136 SQKRFDFVF 144 (414)
T ss_dssp TTCCCSEEE
T ss_pred ccccccEEE
Confidence 556777777
No 458
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=87.37 E-value=0.24 Score=53.39 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=21.1
Q ss_pred HhcCCEEEEEcCCCCcHHhHHHHHH
Q 011751 26 VRKNDILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 26 l~~~~~~~i~apTGsGKT~~~~~~~ 50 (478)
+..|+.++|+||+||||||++..+.
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHHH
Confidence 3468899999999999999987654
No 459
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.36 E-value=0.51 Score=46.25 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=20.3
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
..+-+++.||+|||||+++..++.+.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 34789999999999998776555444
No 460
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=87.34 E-value=0.36 Score=39.61 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHhHHHHHHhh
Q 011751 31 ILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.++++|++|+|||+++..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999777643
No 461
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=87.25 E-value=0.38 Score=48.43 Aligned_cols=58 Identities=16% Similarity=0.220 Sum_probs=36.8
Q ss_pred HHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhhcCccCCCcEEEEecchHHHHHHHHHHH
Q 011751 20 KRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRV 79 (478)
Q Consensus 20 ~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~ 79 (478)
.+++.-+..|+.++|.|++|+|||+++.+++.+..... +..++++.. .....+...++
T Consensus 233 D~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~-g~~vl~~s~-E~s~~~l~~r~ 290 (503)
T 1q57_A 233 NDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAM-GKKVGLAML-EESVEETAEDL 290 (503)
T ss_dssp HHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTS-CCCEEEEES-SSCHHHHHHHH
T ss_pred hHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhc-CCcEEEEec-cCCHHHHHHHH
Confidence 33333356789999999999999999988887765432 334444432 22234444443
No 462
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=87.21 E-value=0.11 Score=51.01 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=19.6
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 27 RKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
..| .++++|||||||||++..+..
T Consensus 59 ~~G-~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 59 GGG-FCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp CSS-EEEEEESHHHHHHHHTHHHHH
T ss_pred CCC-cEEEECCCCCCHHHHHHHHHH
Confidence 356 899999999999998866543
No 463
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=87.16 E-value=0.31 Score=45.56 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=21.9
Q ss_pred HhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 26 VRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 26 l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
+..+..+++.||+|+|||+++.+++..
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 345677899999999999888777654
No 464
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=87.14 E-value=0.24 Score=47.36 Aligned_cols=42 Identities=12% Similarity=0.132 Sum_probs=27.0
Q ss_pred cCCCCHHHHHhhcCcCCCCccEEEEeccccccccccCCeEEEEeCC
Q 011751 294 FSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPG 339 (478)
Q Consensus 294 h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g 339 (478)
.++++...|..+++.+.+-..-+|++|. .+. ..+--++++-|
T Consensus 302 ~s~LD~~~~~~l~~~l~~~~qt~i~~th-~~~---~~~~i~~l~~G 343 (359)
T 2o5v_A 302 TAELDPHRRQYLLDLAASVPQAIVTGTE-LAP---GAALTLRAQAG 343 (359)
T ss_dssp GGCCCHHHHHHHHHHHHHSSEEEEEESS-CCT---TCSEEEEEETT
T ss_pred cccCCHHHHHHHHHHHHhcCcEEEEEEe-ccc---cCCEEEEEECC
Confidence 6899999888887766432245666676 333 44555666655
No 465
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.07 E-value=0.27 Score=46.31 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=19.1
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
.| ..+|+||||||||+++..+..
T Consensus 24 ~g-~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 24 DR-VTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp SS-EEEEECCTTTCSTHHHHHHHH
T ss_pred CC-cEEEECCCCCcHHHHHHHHHH
Confidence 44 899999999999988876554
No 466
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=86.98 E-value=0.37 Score=39.54 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHhHHHHHHhh
Q 011751 31 ILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.++++|++|+|||+++..++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999998777654
No 467
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=86.92 E-value=0.33 Score=46.72 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
..++++.||+|+|||+++..+....
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999998886665443
No 468
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.91 E-value=0.56 Score=46.01 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.+-+++.||+|||||+++..++.+.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4789999999999998876555444
No 469
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=86.89 E-value=0.38 Score=39.72 Aligned_cols=22 Identities=18% Similarity=0.471 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHhHHHHHHhh
Q 011751 31 ILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.++++|++|+|||+++..+...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999777643
No 470
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.63 E-value=0.5 Score=46.25 Aligned_cols=26 Identities=19% Similarity=0.278 Sum_probs=20.1
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhc
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
..+-+++.||+|||||+++..++.+.
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999998876555443
No 471
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=86.61 E-value=0.39 Score=41.62 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHhHHHHHHhhc
Q 011751 31 ILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.+.|+|+.||||||+...+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 78899999999999987765543
No 472
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=86.60 E-value=0.18 Score=54.59 Aligned_cols=32 Identities=16% Similarity=0.270 Sum_probs=25.9
Q ss_pred HHHHHHhcCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 21 RLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 21 ~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+...+..|+.+.|+||+||||||++..+.-.
T Consensus 691 dVSl~I~~GeivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 691 DINFQCSLSSRIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp EEEEEEETTCEEEECSCCCHHHHHHHHHHTTS
T ss_pred ccEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34445678999999999999999999777643
No 473
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=86.55 E-value=0.38 Score=43.40 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=18.6
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhh
Q 011751 30 DILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
..+.|+|+.||||||+...+...
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999988765543
No 474
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=86.52 E-value=0.41 Score=40.82 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=19.3
Q ss_pred CEEEEEcCCCCcHHhHHHHHHhh
Q 011751 30 DILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
-.++++|++|+|||+++..+...
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999776644
No 475
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=86.42 E-value=0.39 Score=44.57 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=18.6
Q ss_pred CEEEEEcCCCCcHHhHHHHHHh
Q 011751 30 DILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~~ 51 (478)
..++++|++||||||++..+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999877654
No 476
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=86.28 E-value=0.42 Score=40.49 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHhHHHHHHh
Q 011751 31 ILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~ 51 (478)
.++++|++|+|||+++..+.-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999987764
No 477
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=86.25 E-value=0.44 Score=39.41 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHhHHHHHHhhc
Q 011751 31 ILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.++++|++|+|||+++..++...
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999998776543
No 478
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=86.24 E-value=0.44 Score=39.97 Aligned_cols=22 Identities=32% Similarity=0.690 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHhHHHHHHhh
Q 011751 31 ILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.++++|++|+|||+++..++..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999777644
No 479
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=86.19 E-value=0.45 Score=39.14 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHhHHHHHHhh
Q 011751 31 ILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.++++|++|+|||+++..++..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999998777644
No 480
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=86.17 E-value=0.41 Score=44.07 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=18.2
Q ss_pred CEEEEEcCCCCcHHhHHHHHH
Q 011751 30 DILIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 30 ~~~~i~apTGsGKT~~~~~~~ 50 (478)
..++|+|+.||||||++..+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999987766
No 481
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=86.14 E-value=0.42 Score=40.22 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=20.0
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
.|+-++++|++|+||||++..++.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 456789999999999988876665
No 482
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=86.13 E-value=0.46 Score=45.04 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=20.0
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
...++++.||+|+|||+++..+...
T Consensus 44 ~~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHh
Confidence 4567999999999999888666543
No 483
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=86.06 E-value=0.44 Score=39.39 Aligned_cols=22 Identities=27% Similarity=0.667 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHhHHHHHHhh
Q 011751 31 ILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.++++|++|+|||+++..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5789999999999999777643
No 484
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=86.03 E-value=0.37 Score=40.90 Aligned_cols=21 Identities=62% Similarity=0.822 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHhHHHHHHh
Q 011751 31 ILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~ 51 (478)
.++++|++|+|||+++..++-
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999977654
No 485
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.03 E-value=0.45 Score=39.30 Aligned_cols=23 Identities=26% Similarity=0.561 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHhHHHHHHhhc
Q 011751 31 ILIIVGETGSGKTTQLPQFLFHA 53 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~~~ 53 (478)
.++++|++|+|||+++..++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999997776543
No 486
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=85.99 E-value=0.37 Score=52.06 Aligned_cols=23 Identities=35% Similarity=0.374 Sum_probs=20.4
Q ss_pred hcCCEEEEEcCCCCcHHhHHHHH
Q 011751 27 RKNDILIIVGETGSGKTTQLPQF 49 (478)
Q Consensus 27 ~~~~~~~i~apTGsGKT~~~~~~ 49 (478)
..|+.++|+||+||||||++.++
T Consensus 660 ~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 660 DKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TTBCEEEEECCTTSSHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 45789999999999999998776
No 487
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=85.98 E-value=0.67 Score=45.93 Aligned_cols=31 Identities=23% Similarity=0.427 Sum_probs=22.4
Q ss_pred HHHHHhcC----CEEEEEcCCCCcHHhHHHHHHhh
Q 011751 22 LVEEVRKN----DILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 22 ~~~~l~~~----~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
++..+..+ +.+++.||+|+|||+++..+...
T Consensus 52 ~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 52 IVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 34444444 58999999999999888655544
No 488
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=85.93 E-value=0.19 Score=45.81 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=19.4
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHhh
Q 011751 29 NDILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+.+++.||+|+|||+++..+...
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHH
Confidence 456899999999999888666543
No 489
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=85.87 E-value=0.47 Score=39.07 Aligned_cols=22 Identities=36% Similarity=0.691 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHhHHHHHHhh
Q 011751 31 ILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.++++|++|+|||+++..+...
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999998777644
No 490
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=85.82 E-value=0.31 Score=45.16 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=15.5
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHh
Q 011751 29 NDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
...+.|+||.||||||++..+..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999998865543
No 491
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=85.78 E-value=0.49 Score=44.02 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCC--EEEEEcCCCCcHHhHHHHHHh
Q 011751 18 VEKRLVEEVRKND--ILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 18 ~q~~~~~~l~~~~--~~~i~apTGsGKT~~~~~~~~ 51 (478)
..+.+...+..++ ++++.||+|+|||+++..+..
T Consensus 25 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~ 60 (319)
T 2chq_A 25 VIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALAR 60 (319)
T ss_dssp HHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHH
Confidence 3344444444444 599999999999988765543
No 492
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=85.77 E-value=0.14 Score=45.48 Aligned_cols=22 Identities=27% Similarity=0.599 Sum_probs=17.4
Q ss_pred EEEEEcCCCCcHHhHHHHHHhh
Q 011751 31 ILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.+.|+|||||||||++..+...
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4468899999999998766543
No 493
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=85.74 E-value=4.1 Score=35.44 Aligned_cols=75 Identities=9% Similarity=0.073 Sum_probs=46.5
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEecccc------cc
Q 011751 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIA------ET 325 (478)
Q Consensus 252 ~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~------~~ 325 (478)
..+.++||.+|+++-++++++.+.+.... .+..+..++|+.+..++...+. ..+|+|+|.-- ..
T Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~-----~~~iiv~Tp~~l~~~~~~~ 149 (224)
T 1qde_A 80 VKAPQALMLAPTRELALQIQKVVMALAFH-----MDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRR 149 (224)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTT-----SCCCEEEECC----------CT-----TCSEEEECHHHHHHHHHTT
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHHhcc-----cCceEEEEeCCcchHHHHhcCC-----CCCEEEECHHHHHHHHHhC
Confidence 34668999999999999999888875332 1566788899877655443332 26899999621 33
Q ss_pred ccccCCeEEEE
Q 011751 326 SVTIPGIKYVI 336 (478)
Q Consensus 326 Gvdip~v~~VI 336 (478)
.+++..+++||
T Consensus 150 ~~~~~~~~~iV 160 (224)
T 1qde_A 150 RFRTDKIKMFI 160 (224)
T ss_dssp SSCCTTCCEEE
T ss_pred CcchhhCcEEE
Confidence 45667777777
No 494
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=85.71 E-value=0.48 Score=39.56 Aligned_cols=22 Identities=23% Similarity=0.646 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHhHHHHHHhh
Q 011751 31 ILIIVGETGSGKTTQLPQFLFH 52 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~~ 52 (478)
.++++|++|+|||+++..++..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999777643
No 495
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=85.70 E-value=0.25 Score=55.70 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCCEEEEEcCCCCcHHhHHHHHHh
Q 011751 19 EKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 19 q~~~~~~l~~~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
.+.+...+..|+.+.|+|||||||||++..+.-
T Consensus 406 L~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g 438 (1284)
T 3g5u_A 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQR 438 (1284)
T ss_dssp EEEEEEEECTTCEEEEECCSSSSHHHHHHHTTT
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 344445567899999999999999999976653
No 496
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=85.68 E-value=0.54 Score=44.58 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=19.5
Q ss_pred HhcCCE--EEEEcCCCCcHHhHHHHHH
Q 011751 26 VRKNDI--LIIVGETGSGKTTQLPQFL 50 (478)
Q Consensus 26 l~~~~~--~~i~apTGsGKT~~~~~~~ 50 (478)
+..|+. ++++|+.||||||+...+.
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHHHHH
Confidence 346655 9999999999998885444
No 497
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=85.63 E-value=0.49 Score=39.15 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHhHHHHHHh
Q 011751 31 ILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 31 ~~~i~apTGsGKT~~~~~~~~ 51 (478)
.++++|++|+|||+++..++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 588999999999999977764
No 498
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=85.59 E-value=0.65 Score=47.01 Aligned_cols=42 Identities=26% Similarity=0.390 Sum_probs=29.0
Q ss_pred cCCEEEEEcCCCCcHHhHHHHHHhhcCccC--CCcEEEEecchH
Q 011751 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCR--DGKLIGVTQPRR 69 (478)
Q Consensus 28 ~~~~~~i~apTGsGKT~~~~~~~~~~~~~~--~~~~i~~~~p~~ 69 (478)
..-+++|.|.||||||+++..++....... ...+++++-|..
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred hCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 346899999999999988877776443322 234566666664
No 499
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=85.58 E-value=0.44 Score=40.66 Aligned_cols=23 Identities=13% Similarity=0.297 Sum_probs=19.4
Q ss_pred CCEEEEEcCCCCcHHhHHHHHHh
Q 011751 29 NDILIIVGETGSGKTTQLPQFLF 51 (478)
Q Consensus 29 ~~~~~i~apTGsGKT~~~~~~~~ 51 (478)
.-.++++|++|+|||+++..++.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35789999999999999977654
No 500
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=85.47 E-value=1.8 Score=38.43 Aligned_cols=75 Identities=19% Similarity=0.235 Sum_probs=54.1
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCccEEEEecc-----ccc-cc
Q 011751 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN-----IAE-TS 326 (478)
Q Consensus 253 ~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~i~~~f~~g~~~vlvaT~-----~~~-~G 326 (478)
.+..+||.+|+++-+.++++.+.+..... ++.+..++|+.+..++...+.. ..+|+|+|. .+. ..
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~ 171 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRAC-----RLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGK 171 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTS
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhc-----CceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCC
Confidence 35679999999999999988887764432 5678888999988766544332 357999996 222 23
Q ss_pred cccCCeEEEE
Q 011751 327 VTIPGIKYVI 336 (478)
Q Consensus 327 vdip~v~~VI 336 (478)
+++.++++||
T Consensus 172 ~~~~~~~~lV 181 (242)
T 3fe2_A 172 TNLRRTTYLV 181 (242)
T ss_dssp CCCTTCCEEE
T ss_pred CCcccccEEE
Confidence 5677888877
Done!