BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011752
         (478 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ODM|A Chain A, Archaeal-Type Phosphoenolpyruvate Carboxylase
 pdb|3ODM|B Chain B, Archaeal-Type Phosphoenolpyruvate Carboxylase
 pdb|3ODM|C Chain C, Archaeal-Type Phosphoenolpyruvate Carboxylase
 pdb|3ODM|D Chain D, Archaeal-Type Phosphoenolpyruvate Carboxylase
 pdb|3ODM|E Chain E, Archaeal-Type Phosphoenolpyruvate Carboxylase
 pdb|3ODM|F Chain F, Archaeal-Type Phosphoenolpyruvate Carboxylase
 pdb|3ODM|G Chain G, Archaeal-Type Phosphoenolpyruvate Carboxylase
 pdb|3ODM|H Chain H, Archaeal-Type Phosphoenolpyruvate Carboxylase
          Length = 560

 Score = 30.8 bits (68), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 10/92 (10%)

Query: 384 ADMIKSENMDKEELSKEKNRCVLVPKTLRIDDPNEAAKSSIWATLGIKNESLAGGRLFKG 443
           AD++K E + +E LS + ++   VP+ +          +    TLG+  E +  GR    
Sbjct: 388 ADLVKDEVLKQEILSIDNSKEYAVPRAISF--------TGAMYTLGMPPELMGMGRALNE 439

Query: 444 LQSKSDEK--SHMAETSPVLRANPAALSRSLN 473
           +++K  ++    + E  P+LR + A  +R  N
Sbjct: 440 IKTKYGQEGIDKLLEIYPILRKDLAFAARFAN 471


>pdb|1JR1|A Chain A, Crystal Structure Of Inosine Monophosphate Dehydrogenase
           In Complex With Mycophenolic Acid
 pdb|1JR1|B Chain B, Crystal Structure Of Inosine Monophosphate Dehydrogenase
           In Complex With Mycophenolic Acid
          Length = 514

 Score = 30.8 bits (68), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 381 SRDADMIKSENMDK--EELSKEKNRCVLVPKTLRIDDPNEAAKSSIWATLGIKNE 433
           SRD D +K E  D+  EE+  ++   V+ P  + + + NE  + S    L I NE
Sbjct: 160 SRDIDFLKEEEHDRFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNE 214


>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
 pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
 pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
 pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
          Length = 479

 Score = 30.4 bits (67), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 306 SPIPCLPGVPWPYPWNASVPPPAFCPSGFPMSFYPAAFWNCGIPSTWN 353
           S I     + W  P+N  V    FC S  P +++   +W C I ST N
Sbjct: 377 SAILLAFIITWT-PYNIMVLVNTFCDSCIPKTYWNLGYWLCYINSTVN 423


>pdb|1B3O|A Chain A, Ternary Complex Of Human Type-Ii Inosine Monophosphate
           Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
           Dinucleotide
 pdb|1B3O|B Chain B, Ternary Complex Of Human Type-Ii Inosine Monophosphate
           Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
           Dinucleotide
 pdb|1NF7|A Chain A, Ternary Complex Of The Human Type Ii Inosine Monophosphate
           Dedhydrogenase With Ribavirin Monophosphate And C2-
           Mycophenolic Adenine Dinucleotide
 pdb|1NF7|B Chain B, Ternary Complex Of The Human Type Ii Inosine Monophosphate
           Dedhydrogenase With Ribavirin Monophosphate And C2-
           Mycophenolic Adenine Dinucleotide
 pdb|1NFB|A Chain A, Ternary Complex Of The Human Type Ii Inosine Monophosphate
           Dedhydrogenase With 6cl-Imp And Nad
 pdb|1NFB|B Chain B, Ternary Complex Of The Human Type Ii Inosine Monophosphate
           Dedhydrogenase With 6cl-Imp And Nad
          Length = 514

 Score = 29.3 bits (64), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 381 SRDADMIKSENMD--KEELSKEKNRCVLVPKTLRIDDPNEAAKSSIWATLGIKNE 433
           SRD D +K E  D   EE+  ++   V+ P  + + + NE  + S    L I NE
Sbjct: 160 SRDIDFLKEEEHDCFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNE 214


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.131    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,875,536
Number of Sequences: 62578
Number of extensions: 545360
Number of successful extensions: 615
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 614
Number of HSP's gapped (non-prelim): 4
length of query: 478
length of database: 14,973,337
effective HSP length: 103
effective length of query: 375
effective length of database: 8,527,803
effective search space: 3197926125
effective search space used: 3197926125
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)