Query 011752
Match_columns 478
No_of_seqs 149 out of 261
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 14:36:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011752.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011752hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0g_I DNA-directed RNA polyme 68.8 3.5 0.00012 35.2 3.3 46 119-166 64-112 (113)
2 1tfi_A Transcriptional elongat 63.0 3.5 0.00012 30.9 2.0 37 129-165 9-48 (50)
3 1qyp_A RNA polymerase II; tran 62.0 3.1 0.0001 31.2 1.5 38 129-166 15-55 (57)
4 4f02_C Eukaryotic translation 51.0 4.1 0.00014 27.5 0.5 13 409-421 1-13 (27)
5 3dfx_A Trans-acting T-cell-spe 50.5 12 0.0004 29.6 3.2 44 128-175 6-49 (63)
6 1twf_I B12.6, DNA-directed RNA 49.8 17 0.00057 31.3 4.3 47 120-168 65-114 (122)
7 2fiy_A Protein FDHE homolog; F 43.1 8.9 0.0003 38.1 1.7 35 129-164 222-263 (309)
8 1gnf_A Transcription factor GA 42.7 17 0.00058 27.0 2.8 41 129-173 4-44 (46)
9 3po3_S Transcription elongatio 41.1 13 0.00044 34.1 2.4 35 128-165 136-176 (178)
10 1k82_A Formamidopyrimidine-DNA 39.1 9.2 0.00031 36.9 1.1 29 129-162 240-268 (268)
11 1ee8_A MUTM (FPG) protein; bet 38.9 10 0.00035 36.6 1.4 29 129-162 235-263 (266)
12 2xzf_A Formamidopyrimidine-DNA 37.8 10 0.00034 36.6 1.1 29 129-162 242-270 (271)
13 1pqv_S STP-alpha, transcriptio 36.5 13 0.00045 36.6 1.8 37 129-165 268-307 (309)
14 3u6p_A Formamidopyrimidine-DNA 36.0 9.7 0.00033 36.8 0.7 29 129-162 245-273 (273)
15 1k3x_A Endonuclease VIII; hydr 32.9 12 0.00041 35.9 0.8 29 129-162 234-262 (262)
16 3qt1_I DNA-directed RNA polyme 29.2 12 0.0004 33.2 0.0 44 121-166 86-132 (133)
17 4hc9_A Trans-acting T-cell-spe 26.5 47 0.0016 28.6 3.3 45 127-175 57-101 (115)
18 3cw1_L U1 small nuclear ribonu 26.3 15 0.0005 30.2 0.1 17 153-169 2-18 (77)
19 2vut_I AREA, nitrogen regulato 25.3 32 0.0011 25.2 1.8 40 130-173 2-41 (43)
20 2jny_A Uncharacterized BCR; st 23.0 23 0.00077 28.2 0.6 31 127-164 8-38 (67)
21 2pk7_A Uncharacterized protein 22.1 29 0.001 27.6 1.1 30 128-164 7-36 (69)
22 2js4_A UPF0434 protein BB2007; 21.8 40 0.0014 26.9 1.8 32 127-165 6-37 (70)
23 1wii_A Hypothetical UPF0222 pr 21.5 45 0.0015 27.6 2.2 42 123-165 17-58 (85)
24 3nw0_A Non-structural maintena 21.3 13 0.00045 35.3 -1.3 38 129-167 193-230 (238)
25 4gat_A Nitrogen regulatory pro 20.4 92 0.0031 24.7 3.6 45 127-175 7-51 (66)
No 1
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=68.83 E-value=3.5 Score=35.17 Aligned_cols=46 Identities=20% Similarity=0.392 Sum_probs=27.9
Q ss_pred cccccCCCCCccCCCCCCCCCCceeeecccCCCCCc---chhhhhhhhhcc
Q 011752 119 QEKTLKKPDKILPCPRCNSMDTKFCYYNNYNINQPR---HFCKACQRYWTA 166 (478)
Q Consensus 119 q~k~l~~p~~~~~CPRc~S~~tkfcyyNny~~~qPR---~fCk~C~RywT~ 166 (478)
++..|++ ....||+|...+..|-..+-.....|- |.|.+|.-.|..
T Consensus 64 ~~~tlp~--~~~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~w~~ 112 (113)
T 3h0g_I 64 TDPTLPR--SDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAFEE 112 (113)
T ss_dssp TCSSSCB--CCSCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCCCCC
T ss_pred ccccCCC--cccCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCEEec
Confidence 3455544 337999999876544222222222221 889999999964
No 2
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=63.01 E-value=3.5 Score=30.91 Aligned_cols=37 Identities=16% Similarity=0.677 Sum_probs=26.7
Q ss_pred ccCCCCCCCCCCceeeecccCCCCCc---chhhhhhhhhc
Q 011752 129 ILPCPRCNSMDTKFCYYNNYNINQPR---HFCKACQRYWT 165 (478)
Q Consensus 129 ~~~CPRc~S~~tkfcyyNny~~~qPR---~fCk~C~RywT 165 (478)
...||+|...+.-|--.+......|- |.|.+|..-|.
T Consensus 9 ~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~ 48 (50)
T 1tfi_A 9 LFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 48 (50)
T ss_dssp CSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred ccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEE
Confidence 36899999887776555555444443 88999998885
No 3
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=61.97 E-value=3.1 Score=31.24 Aligned_cols=38 Identities=18% Similarity=0.557 Sum_probs=24.6
Q ss_pred ccCCCCCCCCCCceeeecccCCCCC---cchhhhhhhhhcc
Q 011752 129 ILPCPRCNSMDTKFCYYNNYNINQP---RHFCKACQRYWTA 166 (478)
Q Consensus 129 ~~~CPRc~S~~tkfcyyNny~~~qP---R~fCk~C~RywT~ 166 (478)
.++||+|...+..|--.+-.....| .|.|.+|.--|..
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 4789999984433333333233334 3899999999975
No 4
>4f02_C Eukaryotic translation initiation factor 4 gamma; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens}
Probab=51.04 E-value=4.1 Score=27.50 Aligned_cols=13 Identities=62% Similarity=0.997 Sum_probs=10.8
Q ss_pred ceeccCCCccccc
Q 011752 409 KTLRIDDPNEAAK 421 (478)
Q Consensus 409 KTLRIDDp~EAAK 421 (478)
|||||-||+.-.|
T Consensus 1 k~irirdpnqggk 13 (27)
T 4f02_C 1 KTIRIRDPNQGGK 13 (27)
T ss_pred CcceecCccccch
Confidence 7999999987554
No 5
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=50.47 E-value=12 Score=29.63 Aligned_cols=44 Identities=18% Similarity=0.471 Sum_probs=32.2
Q ss_pred CccCCCCCCCCCCceeeecccCCCCCcchhhhhhhhhccCCccccccc
Q 011752 128 KILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPV 175 (478)
Q Consensus 128 ~~~~CPRc~S~~tkfcyyNny~~~qPR~fCk~C~RywT~GG~lRnvPv 175 (478)
....|-.|....|-. +-.- .....+|-+|.-||-..|..|-+.+
T Consensus 6 ~~~~C~~C~tt~Tp~--WR~g--p~G~~LCNACGl~~~~~~~~RP~~~ 49 (63)
T 3dfx_A 6 AGTSCANCQTTTTTL--WRRN--ANGDPVCNACGLYYKLHNINRPLTM 49 (63)
T ss_dssp TTCCCTTTCCSCCSS--CCCC--TTSCCCCHHHHHHHHHHSSCCCGGG
T ss_pred CCCcCCCcCCCCCCc--cCCC--CCCCchhhHHHHHHHHcCCCCCcCc
Confidence 345899999988753 2221 1223899999999999999887765
No 6
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=49.83 E-value=17 Score=31.30 Aligned_cols=47 Identities=21% Similarity=0.503 Sum_probs=30.9
Q ss_pred ccccCCCCCccCCCCCCCCCCceeeecccCCCCCc---chhhhhhhhhccCC
Q 011752 120 EKTLKKPDKILPCPRCNSMDTKFCYYNNYNINQPR---HFCKACQRYWTAGG 168 (478)
Q Consensus 120 ~k~l~~p~~~~~CPRc~S~~tkfcyyNny~~~qPR---~fCk~C~RywT~GG 168 (478)
+..+++- ...||+|...+.-|-..+-.....|- |.|.+|.-.|....
T Consensus 65 ~~t~p~t--~~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~~nn 114 (122)
T 1twf_I 65 DPTLPRS--DRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQ 114 (122)
T ss_dssp CTTSCCC--CCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECCT
T ss_pred ccccccc--CCCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEeccCC
Confidence 3455443 46899999876555444443333332 89999999998764
No 7
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=43.05 E-value=8.9 Score=38.09 Aligned_cols=35 Identities=20% Similarity=0.527 Sum_probs=21.7
Q ss_pred ccCCCCCCCCCCceeeecccC-------CCCCcchhhhhhhhh
Q 011752 129 ILPCPRCNSMDTKFCYYNNYN-------INQPRHFCKACQRYW 164 (478)
Q Consensus 129 ~~~CPRc~S~~tkfcyyNny~-------~~qPR~fCk~C~Ryw 164 (478)
.+.||.|... .++-||.--. ...--+.|..|+.|+
T Consensus 222 R~~C~~Cg~~-~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~Yl 263 (309)
T 2fiy_A 222 RIKCSHCEES-KHLAYLSLEHDGQPAEKAVLRAETCPSCQGYL 263 (309)
T ss_dssp TTSCSSSCCC-SCCEEECCCC-CCCSTTCSEEEEEETTTTEEE
T ss_pred CcCCcCCCCC-CCeeEEEecCccccCCCcceEEEEcccccchH
Confidence 4577888877 3566664433 112237788888887
No 8
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=42.68 E-value=17 Score=27.04 Aligned_cols=41 Identities=22% Similarity=0.515 Sum_probs=29.8
Q ss_pred ccCCCCCCCCCCceeeecccCCCCCcchhhhhhhhhccCCccccc
Q 011752 129 ILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNV 173 (478)
Q Consensus 129 ~~~CPRc~S~~tkfcyyNny~~~qPR~fCk~C~RywT~GG~lRnv 173 (478)
...|-.|....|-. +-.-. ....+|-+|.-||-..|.+|-+
T Consensus 4 ~~~C~~C~tt~Tp~--WR~gp--~G~~LCNaCGl~~k~~~~~RP~ 44 (46)
T 1gnf_A 4 ARECVNCGATATPL--WRRDR--TGHYLCNACGLYHKMNGQNRPL 44 (46)
T ss_dssp SCCCTTTCCCCCSS--CBCCT--TCCCBCSHHHHHHHHTCSCCCC
T ss_pred CCCCCCcCCCCCCc--CccCC--CCCccchHHHHHHHHcCCCCCC
Confidence 45799999988753 22221 2238999999999999998743
No 9
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=41.06 E-value=13 Score=34.15 Aligned_cols=35 Identities=23% Similarity=0.651 Sum_probs=22.7
Q ss_pred CccCCCCCCCCCCceeeecccC---CCCC---cchhhhhhhhhc
Q 011752 128 KILPCPRCNSMDTKFCYYNNYN---INQP---RHFCKACQRYWT 165 (478)
Q Consensus 128 ~~~~CPRc~S~~tkfcyyNny~---~~qP---R~fCk~C~RywT 165 (478)
....||+|...+. ||...+ ..-| -|.|.+|..-|.
T Consensus 136 ~~~~Cp~C~~~~a---~~~q~Q~rsaDE~mt~f~~C~~C~~~w~ 176 (178)
T 3po3_S 136 DRFTCGKCKEKKV---SYYQLQTRSAAAPLTTFCTCEACGNRWK 176 (178)
T ss_dssp SSSCCSSSCCSCE---ECCCCCCSCTTSCCCCCEEETTTCCEEC
T ss_pred CCcCCCCCCCCce---EEEEeecccCCCCCcEEEEcCCCCCeec
Confidence 3579999996554 443332 1112 388999999885
No 10
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=39.10 E-value=9.2 Score=36.85 Aligned_cols=29 Identities=21% Similarity=0.534 Sum_probs=21.2
Q ss_pred ccCCCCCCCCCCceeeecccCCCCCcchhhhhhh
Q 011752 129 ILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQR 162 (478)
Q Consensus 129 ~~~CPRc~S~~tkfcyyNny~~~qPR~fCk~C~R 162 (478)
..+||||...=.|.-+ . .+.-|||..||+
T Consensus 240 g~pC~~CG~~I~~~~~-~----gR~t~~CP~CQ~ 268 (268)
T 1k82_A 240 GEPCRVCGTPIVATKH-A----QRATFYCRQCQK 268 (268)
T ss_dssp TSBCTTTCCBCEEEEE-T----TEEEEECTTTCC
T ss_pred CCCCCCCCCEeeEEEE-C----CCceEECCCCCC
Confidence 4589999987666543 2 355599999995
No 11
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=38.89 E-value=10 Score=36.57 Aligned_cols=29 Identities=34% Similarity=0.779 Sum_probs=21.2
Q ss_pred ccCCCCCCCCCCceeeecccCCCCCcchhhhhhh
Q 011752 129 ILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQR 162 (478)
Q Consensus 129 ~~~CPRc~S~~tkfcyyNny~~~qPR~fCk~C~R 162 (478)
..+||||...=.|.-+ . .+.-|||..||+
T Consensus 235 g~pC~~CG~~I~~~~~-~----gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 235 GLPCPACGRPVERRVV-A----GRGTHFCPTCQG 263 (266)
T ss_dssp TSBCTTTCCBCEEEES-S----SCEEEECTTTTT
T ss_pred CCCCCCCCCEeeEEEE-C----CCceEECCCCCC
Confidence 4589999887665433 2 355699999997
No 12
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=37.82 E-value=10 Score=36.59 Aligned_cols=29 Identities=31% Similarity=0.641 Sum_probs=21.3
Q ss_pred ccCCCCCCCCCCceeeecccCCCCCcchhhhhhh
Q 011752 129 ILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQR 162 (478)
Q Consensus 129 ~~~CPRc~S~~tkfcyyNny~~~qPR~fCk~C~R 162 (478)
..+||||...=.|.-+ . .+.-|||..||+
T Consensus 242 G~pC~~CG~~I~~~~~-~----gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 242 GEKCSRCGAEIQKIKV-A----GRGTHFCPVCQQ 270 (271)
T ss_dssp TSBCTTTCCBCEEEEE-T----TEEEEECTTTSC
T ss_pred CCCCCCCCCEeeEEEE-C----CCceEECCCCCC
Confidence 3589999887666533 2 355599999996
No 13
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=36.52 E-value=13 Score=36.58 Aligned_cols=37 Identities=19% Similarity=0.627 Sum_probs=22.2
Q ss_pred ccCCCCCCCCCCceeeecccCCCCC---cchhhhhhhhhc
Q 011752 129 ILPCPRCNSMDTKFCYYNNYNINQP---RHFCKACQRYWT 165 (478)
Q Consensus 129 ~~~CPRc~S~~tkfcyyNny~~~qP---R~fCk~C~RywT 165 (478)
...||+|...+..|--.+...-..| -|.|.+|..-|.
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~ 307 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWK 307 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCcee
Confidence 4689999955544311122222222 289999999885
No 14
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=35.97 E-value=9.7 Score=36.82 Aligned_cols=29 Identities=34% Similarity=0.722 Sum_probs=20.7
Q ss_pred ccCCCCCCCCCCceeeecccCCCCCcchhhhhhh
Q 011752 129 ILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQR 162 (478)
Q Consensus 129 ~~~CPRc~S~~tkfcyyNny~~~qPR~fCk~C~R 162 (478)
..+||||...=.|.-+ . .+.-|||..||+
T Consensus 245 g~pC~~CG~~I~~~~~-~----gR~t~~CP~CQ~ 273 (273)
T 3u6p_A 245 GNPCKRCGTPIEKTVV-A----GRGTHYCPRCQR 273 (273)
T ss_dssp TSBCTTTCCBCEEEEE-T----TEEEEECTTTCC
T ss_pred cCCCCCCCCeEEEEEE-C----CCCeEECCCCCC
Confidence 3599999877655433 2 355599999995
No 15
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=32.91 E-value=12 Score=35.87 Aligned_cols=29 Identities=34% Similarity=0.741 Sum_probs=20.5
Q ss_pred ccCCCCCCCCCCceeeecccCCCCCcchhhhhhh
Q 011752 129 ILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQR 162 (478)
Q Consensus 129 ~~~CPRc~S~~tkfcyyNny~~~qPR~fCk~C~R 162 (478)
..+||||...=.|.- +. .+.-|||..||+
T Consensus 234 g~pC~~CG~~I~~~~-~~----gR~t~~CP~CQ~ 262 (262)
T 1k3x_A 234 GEPCERCGSIIEKTT-LS----SRPFYWCPGCQH 262 (262)
T ss_dssp TSBCTTTCCBCEEEE-ET----TEEEEECTTTCC
T ss_pred cCCCCCCCCEeEEEE-EC----CCCeEECCCCCC
Confidence 358999987765543 22 355599999995
No 16
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=29.18 E-value=12 Score=33.19 Aligned_cols=44 Identities=25% Similarity=0.566 Sum_probs=0.0
Q ss_pred cccCCCCCccCCCCCCCCCCceeeecccCCCCC---cchhhhhhhhhcc
Q 011752 121 KTLKKPDKILPCPRCNSMDTKFCYYNNYNINQP---RHFCKACQRYWTA 166 (478)
Q Consensus 121 k~l~~p~~~~~CPRc~S~~tkfcyyNny~~~qP---R~fCk~C~RywT~ 166 (478)
.+|++ ....||+|...+.-|-..+-.....| -|.|..|.--|..
T Consensus 86 ptlp~--t~~~CpkCg~~~a~f~q~Q~RsaDE~mT~fy~C~~C~~~w~e 132 (133)
T 3qt1_I 86 PTLPR--SDRECPKCHSRENVFFQLQIRSADEPMTTFYKCVNCGHRWKE 132 (133)
T ss_dssp -------------------------------------------------
T ss_pred ccCCc--ccCCCCCCCCceEEEEEEeeecCCCCCcEEEEcCCCCCEeCc
Confidence 44543 34799999987665422222222222 2789999999975
No 17
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=26.47 E-value=47 Score=28.60 Aligned_cols=45 Identities=20% Similarity=0.497 Sum_probs=33.5
Q ss_pred CCccCCCCCCCCCCceeeecccCCCCCcchhhhhhhhhccCCccccccc
Q 011752 127 DKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPV 175 (478)
Q Consensus 127 ~~~~~CPRc~S~~tkfcyyNny~~~qPR~fCk~C~RywT~GG~lRnvPv 175 (478)
...+.|-.|....|-. .-. . ...+.+|-+|.-||-..|..|-+-+
T Consensus 57 ~~~~~C~~C~t~~tp~--WRr-~-~~g~~lCNaCgl~~~~~~~~rp~~~ 101 (115)
T 4hc9_A 57 RAGTSCANCQTTTTTL--WRR-N-ANGDPVCNACGLYYKLHNINRPLTM 101 (115)
T ss_dssp CTTCCCTTTCCSCCSS--CEE-C-TTSCEECHHHHHHHHHHSSCCCGGG
T ss_pred cccccCCCcCCCCcce--eEE-C-CCCCCcchHHHHHHHHhCCCCCccc
Confidence 3457999999988752 211 1 2236899999999999999887766
No 18
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A
Probab=26.29 E-value=15 Score=30.25 Aligned_cols=17 Identities=29% Similarity=0.915 Sum_probs=15.1
Q ss_pred CcchhhhhhhhhccCCc
Q 011752 153 PRHFCKACQRYWTAGGT 169 (478)
Q Consensus 153 PR~fCk~C~RywT~GG~ 169 (478)
|||||.-|..|.|+.-.
T Consensus 2 PkYyCdYCd~~lt~Ds~ 18 (77)
T 3cw1_L 2 PKFYCDYCDTYLTHDSP 18 (77)
T ss_pred CCcccccCCceecCCCH
Confidence 89999999999988754
No 19
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=25.32 E-value=32 Score=25.15 Aligned_cols=40 Identities=20% Similarity=0.546 Sum_probs=28.7
Q ss_pred cCCCCCCCCCCceeeecccCCCCCcchhhhhhhhhccCCccccc
Q 011752 130 LPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNV 173 (478)
Q Consensus 130 ~~CPRc~S~~tkfcyyNny~~~qPR~fCk~C~RywT~GG~lRnv 173 (478)
..|-.|....|-. +-.- . ....+|-+|.-||-..|.+|-+
T Consensus 2 ~~C~~C~tt~Tp~--WR~g-p-~G~~LCNaCGl~~k~~~~~RP~ 41 (43)
T 2vut_I 2 TTCTNCFTQTTPL--WRRN-P-EGQPLCNACGLFLKLHGVVRPL 41 (43)
T ss_dssp CCCSSSCCCCCSC--CEEC-T-TSCEECHHHHHHHHHHSSCCCC
T ss_pred CcCCccCCCCCCc--cccC-C-CCCcccHHHHHHHHHhCCCCCC
Confidence 4688898887753 2221 1 2238999999999999998755
No 20
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=23.05 E-value=23 Score=28.16 Aligned_cols=31 Identities=13% Similarity=0.217 Sum_probs=21.0
Q ss_pred CCccCCCCCCCCCCceeeecccCCCCCcchhhhhhhhh
Q 011752 127 DKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYW 164 (478)
Q Consensus 127 ~~~~~CPRc~S~~tkfcyyNny~~~qPR~fCk~C~Ryw 164 (478)
-.++.||.|... .-| ....-...|+.|++-+
T Consensus 8 LeiL~CP~ck~~---L~~----~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 8 LEVLACPKDKGP---LRY----LESEQLLVNERLNLAY 38 (67)
T ss_dssp TCCCBCTTTCCB---CEE----ETTTTEEEETTTTEEE
T ss_pred HHHhCCCCCCCc---CeE----eCCCCEEEcCCCCccc
Confidence 357999999983 222 2335668899997654
No 21
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=22.06 E-value=29 Score=27.55 Aligned_cols=30 Identities=20% Similarity=0.461 Sum_probs=20.4
Q ss_pred CccCCCCCCCCCCceeeecccCCCCCcchhhhhhhhh
Q 011752 128 KILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYW 164 (478)
Q Consensus 128 ~~~~CPRc~S~~tkfcyyNny~~~qPR~fCk~C~Ryw 164 (478)
.++.||.|... .- | ........|++|++-+
T Consensus 7 eiL~CP~ck~~---L~-~---~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 7 DILACPICKGP---LK-L---SADKTELISKGAGLAY 36 (69)
T ss_dssp GTCCCTTTCCC---CE-E---CTTSSEEEETTTTEEE
T ss_pred hheeCCCCCCc---Ce-E---eCCCCEEEcCCCCcEe
Confidence 57899999964 22 2 3345668899997654
No 22
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=21.79 E-value=40 Score=26.86 Aligned_cols=32 Identities=25% Similarity=0.488 Sum_probs=21.6
Q ss_pred CCccCCCCCCCCCCceeeecccCCCCCcchhhhhhhhhc
Q 011752 127 DKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWT 165 (478)
Q Consensus 127 ~~~~~CPRc~S~~tkfcyyNny~~~qPR~fCk~C~RywT 165 (478)
-.++.||.|... .-| ........|++|++-+-
T Consensus 6 L~iL~CP~ck~~---L~~----~~~~~~LiC~~cg~~YP 37 (70)
T 2js4_A 6 LDILVCPVCKGR---LEF----QRAQAELVCNADRLAFP 37 (70)
T ss_dssp CCCCBCTTTCCB---EEE----ETTTTEEEETTTTEEEE
T ss_pred hhheECCCCCCc---CEE----eCCCCEEEcCCCCceec
Confidence 357899999983 322 23356688999976553
No 23
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=21.55 E-value=45 Score=27.63 Aligned_cols=42 Identities=17% Similarity=0.301 Sum_probs=31.5
Q ss_pred cCCCCCccCCCCCCCCCCceeeecccCCCCCcchhhhhhhhhc
Q 011752 123 LKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWT 165 (478)
Q Consensus 123 l~~p~~~~~CPRc~S~~tkfcyyNny~~~qPR~fCk~C~RywT 165 (478)
+.+-++...||.|+..++=-|-+.- ...-.+.-|+.|+-.+.
T Consensus 17 ~~~L~t~F~CPfCnh~~sV~vkidk-~~~~g~l~C~~Cg~~~~ 58 (85)
T 1wii_A 17 TGTLETQFTCPFCNHEKSCDVKMDR-ARNTGVISCTVCLEEFQ 58 (85)
T ss_dssp CCCCSSCCCCTTTCCSSCEEEEEET-TTTEEEEEESSSCCEEE
T ss_pred CCCCCCeEcCCCCCCCCeEEEEEEc-cCCEEEEEcccCCCeEE
Confidence 3566788999999999877777653 34467788999986654
No 24
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=21.29 E-value=13 Score=35.28 Aligned_cols=38 Identities=18% Similarity=0.489 Sum_probs=29.2
Q ss_pred ccCCCCCCCCCCceeeecccCCCCCcchhhhhhhhhccC
Q 011752 129 ILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAG 167 (478)
Q Consensus 129 ~~~CPRc~S~~tkfcyyNny~~~qPR~fCk~C~RywT~G 167 (478)
+..|+.|+..=+..|+++-+ ..+...-|..|+..|...
T Consensus 193 g~~C~~C~~~~H~~C~~~~~-~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 193 GQSCETCGIRMHLPCVAKYF-QSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CEECSSSCCEECHHHHHHHT-TTCSSCBCTTTCCBCCSC
T ss_pred CcccCccChHHHHHHHHHHH-HhCCCCCCCCCCCCCCCC
Confidence 45788888888888875543 456677899999999876
No 25
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=20.37 E-value=92 Score=24.66 Aligned_cols=45 Identities=20% Similarity=0.527 Sum_probs=32.3
Q ss_pred CCccCCCCCCCCCCceeeecccCCCCCcchhhhhhhhhccCCccccccc
Q 011752 127 DKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPV 175 (478)
Q Consensus 127 ~~~~~CPRc~S~~tkfcyyNny~~~qPR~fCk~C~RywT~GG~lRnvPv 175 (478)
.....|-.|...+|-. .-. ...- ..+|-+|.-||-..|.+|-+..
T Consensus 7 ~~~~~C~~C~t~~Tp~--WR~-gp~G-~~LCNaCGl~~~~~~~~RP~~~ 51 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPL--WRR-NPEG-QPLCNACGLFLKLHGVVRPLSL 51 (66)
T ss_dssp SSSCCCTTTCCCCCSS--CEE-ETTT-EEECHHHHHHHHHHCSCCCGGG
T ss_pred CCCCCCCCCCCCCCCc--CCc-CCCC-CCccHHHHHHHHHcCCCCchhh
Confidence 4457899999988762 111 1122 2899999999999999876655
Done!