Query 011753
Match_columns 478
No_of_seqs 407 out of 1728
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 14:37:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011753.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011753hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z2q_A LM5-1; membrane protein 99.8 8.9E-21 3E-25 157.0 4.1 70 209-280 10-79 (84)
2 1x4u_A Zinc finger, FYVE domai 99.8 2E-20 6.7E-25 154.8 6.1 69 210-280 4-78 (84)
3 3t7l_A Zinc finger FYVE domain 99.8 2.3E-20 7.9E-25 156.4 3.7 75 206-284 6-80 (90)
4 2yw8_A RUN and FYVE domain-con 99.8 3.9E-20 1.3E-24 152.4 4.6 67 210-280 9-75 (82)
5 1vfy_A Phosphatidylinositol-3- 99.8 3.4E-20 1.2E-24 149.5 2.3 67 210-281 4-70 (73)
6 1joc_A EEA1, early endosomal a 99.8 2.4E-19 8.2E-24 158.9 4.1 66 210-279 59-124 (125)
7 1dvp_A HRS, hepatocyte growth 99.7 8.6E-18 2.9E-22 161.8 3.9 68 208-280 152-219 (220)
8 3zyq_A Hepatocyte growth facto 99.7 1.2E-17 4.3E-22 161.6 4.1 70 207-281 154-223 (226)
9 1wfk_A Zinc finger, FYVE domai 99.7 3.8E-17 1.3E-21 136.3 4.3 61 218-281 7-67 (88)
10 1y02_A CARP2, FYVE-ring finger 99.6 3.3E-16 1.1E-20 137.6 1.5 60 211-280 10-69 (120)
11 3mpx_A FYVE, rhogef and PH dom 99.6 3E-16 1E-20 163.4 0.0 70 208-280 363-432 (434)
12 2vrw_B P95VAV, VAV1, proto-onc 97.6 2E-05 6.9E-10 81.2 2.3 47 208-254 345-391 (406)
13 1zbd_B Rabphilin-3A; G protein 95.7 0.0054 1.8E-07 54.5 2.9 54 219-277 54-107 (134)
14 2zet_C Melanophilin; complex, 95.4 0.0055 1.9E-07 55.7 2.1 51 220-278 68-118 (153)
15 3ky9_A Proto-oncogene VAV; cal 93.9 0.023 7.8E-07 61.4 2.8 45 210-254 519-563 (587)
16 1wff_A Riken cDNA 2810002D23 p 90.0 0.33 1.1E-05 39.8 4.5 32 217-251 22-53 (85)
17 2csz_A Synaptotagmin-like prot 87.0 0.38 1.3E-05 38.6 3.0 51 219-278 24-74 (76)
18 1wfh_A Zinc finger (AN1-like) 86.8 0.48 1.6E-05 36.8 3.3 29 219-251 14-42 (64)
19 1wfp_A Zinc finger (AN1-like) 85.9 0.8 2.7E-05 36.5 4.2 30 218-251 23-52 (74)
20 1wfl_A Zinc finger protein 216 85.5 0.85 2.9E-05 36.4 4.2 29 219-251 24-52 (74)
21 2e72_A POGO transposable eleme 81.3 0.26 8.8E-06 36.1 -0.3 35 212-247 5-40 (49)
22 1z60_A TFIIH basal transcripti 80.3 0.21 7E-06 38.3 -1.2 31 220-252 15-45 (59)
23 1wg2_A Zinc finger (AN1-like) 79.0 1.5 5.1E-05 34.0 3.2 28 220-251 15-42 (64)
24 2a20_A Regulating synaptic mem 73.2 3.6 0.00012 31.4 3.9 52 219-277 8-60 (62)
25 1x4w_A Hypothetical protein FL 72.5 2.1 7.1E-05 33.5 2.5 32 217-251 12-45 (67)
26 1twf_L ABC10-alpha, DNA-direct 72.3 1.6 5.3E-05 34.4 1.8 28 220-247 28-56 (70)
27 2jrp_A Putative cytoplasmic pr 64.0 4.6 0.00016 32.7 3.0 56 221-280 3-63 (81)
28 2ecm_A Ring finger and CHY zin 63.6 4.3 0.00015 28.7 2.6 50 219-278 4-53 (55)
29 1iym_A EL5; ring-H2 finger, ub 56.8 7.2 0.00025 27.6 2.8 48 220-277 5-52 (55)
30 3lrq_A E3 ubiquitin-protein li 55.6 3.1 0.0001 34.0 0.6 47 221-279 23-69 (100)
31 1bor_A Transcription factor PM 55.2 9.9 0.00034 27.5 3.3 44 219-279 5-48 (56)
32 1wd2_A Ariadne-1 protein homol 53.9 10 0.00034 28.7 3.2 35 220-254 6-43 (60)
33 4gzn_C ZFP-57, zinc finger pro 53.1 5.4 0.00018 29.7 1.6 29 221-249 5-44 (60)
34 2egp_A Tripartite motif-contai 53.0 5.8 0.0002 30.2 1.8 54 220-280 12-65 (79)
35 2ysl_A Tripartite motif-contai 51.2 3.5 0.00012 31.1 0.2 49 220-279 20-68 (73)
36 2ct7_A Ring finger protein 31; 51.0 8.2 0.00028 30.9 2.5 33 221-253 26-59 (86)
37 2lv2_A Insulinoma-associated p 50.8 10 0.00035 30.1 3.0 12 220-231 28-39 (85)
38 1x4v_A Hypothetical protein LO 47.9 13 0.00044 28.6 2.9 26 220-249 12-39 (63)
39 1e4u_A Transcriptional repress 47.8 6.9 0.00024 30.8 1.5 53 219-280 10-62 (78)
40 2ect_A Ring finger protein 126 47.8 13 0.00044 28.3 3.1 51 219-280 14-64 (78)
41 1x4j_A Ring finger protein 38; 47.6 5.9 0.0002 30.2 1.1 50 219-279 22-71 (75)
42 1jm7_B BARD1, BRCA1-associated 47.6 7.6 0.00026 32.4 1.8 43 221-278 23-65 (117)
43 2kiz_A E3 ubiquitin-protein li 47.2 9.6 0.00033 28.3 2.2 52 218-280 12-63 (69)
44 2lce_A B-cell lymphoma 6 prote 45.7 14 0.00048 27.2 2.9 13 220-232 17-29 (74)
45 2yur_A Retinoblastoma-binding 45.6 10 0.00035 28.9 2.1 48 220-278 15-62 (74)
46 3uk3_C Zinc finger protein 217 45.3 11 0.00037 26.1 2.1 12 221-232 5-16 (57)
47 2ecl_A Ring-box protein 2; RNF 45.1 9.8 0.00034 29.7 2.0 60 211-279 6-75 (81)
48 1bbo_A Human enhancer-binding 44.5 13 0.00046 25.6 2.5 10 222-231 3-12 (57)
49 3cc2_Z 50S ribosomal protein L 44.4 6.4 0.00022 33.9 0.8 32 220-251 60-92 (116)
50 2adr_A ADR1; transcription reg 42.6 14 0.00048 25.8 2.4 10 222-231 4-13 (60)
51 2ecv_A Tripartite motif-contai 41.7 13 0.00046 28.3 2.3 53 220-280 19-71 (85)
52 1chc_A Equine herpes virus-1 r 41.6 13 0.00046 27.3 2.2 48 220-280 5-52 (68)
53 3l11_A E3 ubiquitin-protein li 41.1 7.4 0.00025 32.2 0.7 48 220-280 15-62 (115)
54 2ysj_A Tripartite motif-contai 40.9 9.5 0.00032 27.9 1.2 32 220-256 20-51 (63)
55 2ct2_A Tripartite motif protei 40.9 9.3 0.00032 29.6 1.2 53 220-279 15-67 (88)
56 1vd4_A Transcription initiatio 40.5 7.3 0.00025 28.3 0.5 28 221-248 15-50 (62)
57 3h0g_L DNA-directed RNA polyme 39.5 17 0.00057 28.0 2.4 26 220-245 21-46 (63)
58 1wys_A Riken cDNA 2310008M20 p 39.1 34 0.0012 27.1 4.3 27 220-250 14-42 (75)
59 2eps_A POZ-, at HOOK-, and zin 38.3 15 0.00051 25.5 1.9 11 221-231 13-23 (54)
60 1x6e_A Zinc finger protein 24; 37.4 16 0.00054 26.8 2.0 11 221-231 15-25 (72)
61 2djb_A Polycomb group ring fin 36.8 14 0.00049 27.8 1.7 48 220-280 15-62 (72)
62 2ecn_A Ring finger protein 141 36.4 5.6 0.00019 29.8 -0.7 46 220-280 15-60 (70)
63 1x5w_A Zinc finger protein 64, 36.3 17 0.00059 26.4 2.1 11 221-231 10-20 (70)
64 3j20_Y 30S ribosomal protein S 36.3 14 0.00049 26.9 1.5 28 220-247 19-47 (50)
65 2ckl_B Ubiquitin ligase protei 36.0 8.7 0.0003 34.0 0.4 48 221-280 55-102 (165)
66 2cot_A Zinc finger protein 435 35.9 42 0.0014 24.7 4.3 13 219-231 17-29 (77)
67 2d8t_A Dactylidin, ring finger 35.5 11 0.00038 28.3 0.9 47 219-279 14-60 (71)
68 3v2d_5 50S ribosomal protein L 34.7 14 0.00048 28.0 1.3 20 220-244 30-50 (60)
69 3jyw_9 60S ribosomal protein L 34.2 19 0.00066 28.4 2.1 28 220-250 26-57 (72)
70 2ctd_A Zinc finger protein 512 33.7 15 0.00052 29.3 1.5 11 221-231 35-46 (96)
71 2ecy_A TNF receptor-associated 33.5 4 0.00014 30.3 -2.0 48 220-280 15-62 (66)
72 2y43_A E3 ubiquitin-protein li 33.3 11 0.00038 30.2 0.6 46 221-279 23-68 (99)
73 1v87_A Deltex protein 2; ring- 32.9 6.8 0.00023 32.3 -0.8 56 220-279 25-93 (114)
74 2ckl_A Polycomb group ring fin 32.9 11 0.00036 30.9 0.4 48 220-280 15-62 (108)
75 3j21_i 50S ribosomal protein L 32.5 17 0.00057 29.5 1.5 29 220-251 35-67 (83)
76 2gqj_A Zinc finger protein KIA 31.8 14 0.00047 29.2 0.9 12 220-231 24-35 (98)
77 3iz5_m 60S ribosomal protein L 31.6 21 0.0007 29.5 1.9 29 220-251 36-68 (92)
78 1jm7_A BRCA1, breast cancer ty 31.5 15 0.00052 29.8 1.1 48 221-279 22-69 (112)
79 3fl2_A E3 ubiquitin-protein li 31.1 12 0.00041 31.4 0.4 47 221-280 53-99 (124)
80 3ng2_A RNF4, snurf, ring finge 31.1 10 0.00036 28.1 0.0 52 219-279 9-62 (71)
81 1vq8_Z 50S ribosomal protein L 31.0 15 0.00051 29.7 0.9 31 220-251 27-59 (83)
82 2ep4_A Ring finger protein 24; 30.9 16 0.00055 27.5 1.1 50 220-280 15-64 (74)
83 2ayj_A 50S ribosomal protein L 30.6 17 0.00059 27.3 1.1 22 220-244 19-40 (56)
84 2drp_A Protein (tramtrack DNA- 30.1 24 0.00083 25.1 2.0 11 221-231 11-21 (66)
85 2ea6_A Ring finger protein 4; 30.0 12 0.0004 27.5 0.2 52 219-279 14-67 (69)
86 1wfe_A Riken cDNA 2310008M20 p 29.9 23 0.00078 28.8 1.9 27 220-250 25-53 (86)
87 2epr_A POZ-, at HOOK-, and zin 29.8 20 0.00068 24.1 1.3 11 221-231 13-23 (48)
88 2csy_A Zinc finger protein 183 29.5 19 0.00063 27.7 1.3 46 220-279 15-60 (81)
89 4a0k_B E3 ubiquitin-protein li 29.2 13 0.00046 31.7 0.4 57 212-277 40-109 (117)
90 3izc_m 60S ribosomal protein R 29.0 24 0.00084 29.1 1.9 29 220-251 36-68 (92)
91 1wil_A KIAA1045 protein; ring 28.6 27 0.00093 28.5 2.1 31 221-254 16-46 (89)
92 2d9h_A Zinc finger protein 692 28.4 21 0.00072 26.4 1.4 11 221-231 8-18 (78)
93 2xeu_A Ring finger protein 4; 27.8 11 0.00037 27.3 -0.4 51 220-279 3-55 (64)
94 2ct1_A Transcriptional repress 27.5 28 0.00096 25.7 2.0 11 221-231 16-26 (77)
95 2ecj_A Tripartite motif-contai 27.5 31 0.001 24.3 2.1 31 220-255 15-45 (58)
96 3ztg_A E3 ubiquitin-protein li 27.5 16 0.00056 28.6 0.6 48 220-278 13-60 (92)
97 1wim_A KIAA0161 protein; ring 27.5 17 0.00058 29.0 0.7 55 220-277 5-61 (94)
98 4ayb_P DNA-directed RNA polyme 27.2 35 0.0012 24.8 2.2 25 221-245 4-31 (48)
99 2zjr_Z 50S ribosomal protein L 27.2 23 0.00078 26.9 1.4 21 220-245 30-51 (60)
100 2jmo_A Parkin; IBR, E3 ligase, 26.3 90 0.0031 24.4 4.8 35 219-253 24-66 (80)
101 2jne_A Hypothetical protein YF 26.2 26 0.0009 29.2 1.7 56 221-280 33-93 (101)
102 2lcq_A Putative toxin VAPC6; P 26.2 24 0.00082 31.3 1.6 24 221-245 133-156 (165)
103 2dmd_A Zinc finger protein 64, 25.2 39 0.0013 25.7 2.5 29 220-248 8-47 (96)
104 2gmg_A Hypothetical protein PF 25.1 29 0.001 29.3 1.7 23 221-244 68-91 (105)
105 3k7a_M Transcription initiatio 24.7 38 0.0013 33.8 2.9 41 207-247 7-52 (345)
106 3j21_g 50S ribosomal protein L 24.1 32 0.0011 25.3 1.6 24 220-246 14-37 (51)
107 2ecw_A Tripartite motif-contai 24.0 22 0.00074 27.0 0.7 52 220-279 19-70 (85)
108 1t1h_A Gspef-atpub14, armadill 24.0 23 0.00079 26.8 0.9 47 220-279 8-54 (78)
109 2fiy_A Protein FDHE homolog; F 24.0 35 0.0012 34.0 2.4 60 220-280 182-265 (309)
110 2kvh_A Zinc finger and BTB dom 23.8 30 0.001 19.6 1.2 12 236-247 2-13 (27)
111 2l0b_A E3 ubiquitin-protein li 23.6 16 0.00055 29.0 -0.1 50 219-279 39-88 (91)
112 2m0e_A Zinc finger and BTB dom 23.3 30 0.001 19.5 1.2 10 238-247 3-12 (29)
113 2elu_A Zinc finger protein 406 23.1 20 0.00068 24.1 0.3 11 236-246 8-18 (37)
114 2y1n_A E3 ubiquitin-protein li 23.1 11 0.00037 38.9 -1.5 48 221-281 333-380 (389)
115 1ard_A Yeast transcription fac 22.6 29 0.00099 19.7 1.0 10 238-247 3-12 (29)
116 1ffk_W Ribosomal protein L37AE 22.6 32 0.0011 27.2 1.4 28 220-250 27-58 (73)
117 2kvf_A Zinc finger and BTB dom 22.4 34 0.0012 19.4 1.3 13 236-248 2-14 (28)
118 2wbt_A B-129; zinc finger; 2.7 21.8 29 0.001 28.3 1.1 11 221-231 75-85 (129)
119 2m0d_A Zinc finger and BTB dom 21.7 34 0.0012 19.5 1.2 13 236-248 2-14 (30)
120 4a17_Y RPL37A, 60S ribosomal p 21.1 26 0.0009 29.5 0.7 29 220-251 36-68 (103)
121 2yw8_A RUN and FYVE domain-con 20.9 48 0.0016 26.1 2.2 45 24-68 8-53 (82)
122 3t6p_A Baculoviral IAP repeat- 20.6 41 0.0014 33.9 2.1 44 220-281 295-339 (345)
123 2kmk_A Zinc finger protein GFI 20.5 40 0.0014 24.6 1.6 10 222-231 31-40 (82)
124 1rik_A E6APC1 peptide; E6-bind 20.3 38 0.0013 19.3 1.1 12 237-248 2-13 (29)
No 1
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=99.81 E-value=8.9e-21 Score=156.97 Aligned_cols=70 Identities=41% Similarity=0.972 Sum_probs=63.4
Q ss_pred cCCCCcccCCCCCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhcc
Q 011753 209 AEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (478)
Q Consensus 209 ~~~p~W~~d~~~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (478)
...+.|+||+++..|+.|+++|+++ +||||||+||+|||++||.++.+||. ++..+|+|||+.||..|+.
T Consensus 10 ~~~~~W~pd~~~~~C~~C~~~Fs~~-~RrHHCR~CG~v~C~~Cs~~~~~lp~-~~~~~~~RVC~~C~~~l~~ 79 (84)
T 1z2q_A 10 QSKGYWQEDEDAPACNGCGCVFTTT-VRRHHCRNCGYVLCGDCSRHRAAIPM-RGITEPERVCDACYLALRS 79 (84)
T ss_dssp CCCSCCCCTTTCCBCTTTCCBCCTT-SCCEECTTTCCEECTGGGCCEEEETT-TTEEEEEECCHHHHHHHHT
T ss_pred CCCCccccCCCCCCCcCcCCccccc-hhcccccCCCcEEChHHhCCeEeccC-CCCCCCCEECHHHHHHHhh
Confidence 3568999999999999999999986 89999999999999999999999984 3447899999999998875
No 2
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2e-20 Score=154.83 Aligned_cols=69 Identities=20% Similarity=0.458 Sum_probs=61.3
Q ss_pred CCCCcccCCCCCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCC------CCceeeCccchhhhcc
Q 011753 210 EPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRV------SDPQRVCDVCCVRLQS 280 (478)
Q Consensus 210 ~~p~W~~d~~~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~------~~pvRVC~~C~~~L~~ 280 (478)
..+.|+||+++..|+.|+++|+++ +||||||+||+|||+.||.++++||.. +. .+++|||+.||..|+.
T Consensus 4 ~~~~W~pd~~~~~C~~C~~~F~~~-~RrHHCR~CG~vfC~~Cs~~~~~l~~~-g~~~p~~~~~~~RVC~~C~~~l~~ 78 (84)
T 1x4u_A 4 GSSGRYPTNNFGNCTGCSATFSVL-KKRRSCSNCGNSFCSRCCSFKVPKSSM-GATAPEAQRETVFVCASCNQTLSK 78 (84)
T ss_dssp CCCCSCSCCCCSSCSSSCCCCCSS-SCCEECSSSCCEECTTTSCEEECSTTT-SCCCSSCSSCCEEECHHHHHHHHS
T ss_pred CCCccccCCCCCcCcCcCCccccc-hhhhhhcCCCcEEChhhcCCceecccc-cccCccccCCccEECHHHHHHHhc
Confidence 357999999999999999999976 899999999999999999999999842 32 3689999999998865
No 3
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=99.79 E-value=2.3e-20 Score=156.44 Aligned_cols=75 Identities=39% Similarity=0.886 Sum_probs=66.0
Q ss_pred ccccCCCCcccCCCCCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhcccchh
Q 011753 206 LLDAEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQSVQPY 284 (478)
Q Consensus 206 ~~~~~~p~W~~d~~~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~~~~~ 284 (478)
++...+|.|++|.++..|+.|+++|+++ +||||||+||+|||..||.++.++|. ..+|+|||+.||..|+..+.+
T Consensus 6 ~l~~~~p~W~~d~~~~~C~~C~~~F~~~-~RrhhCr~CG~v~C~~Cs~~~~~l~~---~~~~~RVC~~C~~~l~~~~~~ 80 (90)
T 3t7l_A 6 VLGQKQPTWVPDSEAPNCMNCQVKFTFT-KRRHHCRACGKVFCGVCCNRKCKLQY---LEKEARVCVVCYETISKAQAF 80 (90)
T ss_dssp CTTTSCCCCCCGGGCCBCTTTCCBCCSS-SCCEECTTTCCEECGGGSCEEEEETT---TTEEEEECHHHHHHHHHHC--
T ss_pred ccCCCCCcCcccccCCcCcCCCCcccch-hhCccccCCCCEECCcccCCeeecCC---CCCCCeECHHHHHHHHHHhhh
Confidence 4566789999999999999999999976 89999999999999999999999874 358999999999999876554
No 4
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=99.79 E-value=3.9e-20 Score=152.42 Aligned_cols=67 Identities=40% Similarity=0.849 Sum_probs=56.7
Q ss_pred CCCCcccCCCCCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhcc
Q 011753 210 EPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (478)
Q Consensus 210 ~~p~W~~d~~~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (478)
..|.|++|+++..|+.|+++|+++ +||||||+||+|||+.||.++++||. ..+|+|||+.||..|..
T Consensus 9 ~~~~W~~d~~~~~C~~C~~~Fs~~-~RrHHCR~CG~v~C~~Cs~~~~~l~~---~~~~~RVC~~C~~~l~~ 75 (82)
T 2yw8_A 9 KGHAWLKDDEATHCRQCEKEFSIS-RRKHHCRNCGHIFCNTCSSNELALPS---YPKPVRVCDSCHTLLLQ 75 (82)
T ss_dssp ------CCCCCCBCTTTCCBCBTT-BCCEECTTTCCEECSGGGCEEECCTT---CSSCEEECHHHHHHTTC
T ss_pred CCCccccCccCCcccCcCCcccCc-cccccCCCCCCEEChHHhCCeeecCC---CCCcCEECHHHHHHHHH
Confidence 347999999999999999999976 89999999999999999999999984 47899999999998865
No 5
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=99.78 E-value=3.4e-20 Score=149.54 Aligned_cols=67 Identities=39% Similarity=0.954 Sum_probs=57.4
Q ss_pred CCCCcccCCCCCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhccc
Q 011753 210 EPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQSV 281 (478)
Q Consensus 210 ~~p~W~~d~~~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~~ 281 (478)
.+|.|+++ +.|+.|+++|+++ +||||||+||+|||+.||+++++||. ++..+|+|||+.||..|+.+
T Consensus 4 ~~p~W~~~---~~C~~C~~~F~~~-~RrHHCR~CG~v~C~~Cs~~~~~lp~-~~~~~~~RVC~~C~~~l~~i 70 (73)
T 1vfy_A 4 TPADWIDS---DACMICSKKFSLL-NRKHHCRSCGGVFCQEHSSNSIPLPD-LGIYEPVRVCDSCFEDYEFI 70 (73)
T ss_dssp ---CCCCC---SBCTTTCCBCBTT-BCCEECTTTCCEECGGGSCEEEEEGG-GTEEEEEEECHHHHHHHHHH
T ss_pred CCCcCccC---CcccCCCCccCCc-cccccCCCCCEEEcccccCCeEEccc-CCCCCCCEECHHHHHHHHHH
Confidence 47899996 5899999999976 89999999999999999999999984 45568999999999988654
No 6
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=99.75 E-value=2.4e-19 Score=158.90 Aligned_cols=66 Identities=45% Similarity=0.981 Sum_probs=60.7
Q ss_pred CCCCcccCCCCCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhc
Q 011753 210 EPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (478)
Q Consensus 210 ~~p~W~~d~~~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (478)
.+|.|+||.++..|+.|+++|+++ +||||||+||+|||+.||.++.++|. ..+|+|||+.||..|+
T Consensus 59 ~~~~W~~d~~~~~C~~C~~~Fs~~-~RrHHCR~CG~vfC~~Cs~~~~~~p~---~~~p~RVC~~C~~~l~ 124 (125)
T 1joc_A 59 LNRKWAEDNEVQNCMACGKGFSVT-VRRHHCRQCGNIFCAECSAKNALTPS---SKKPVRVCDACFNDLQ 124 (125)
T ss_dssp HHCCCCCGGGCCBCTTTCCBCCSS-SCCEECTTTCCEECGGGSCEEECCTT---CSSCEEECHHHHHHTT
T ss_pred CCCccccCCCCCCCcCcCCccccc-cccccCCCCCeEEChHHhCCccccCC---CCCCCEeCHHHHHHhc
Confidence 457999999999999999999976 89999999999999999999998874 4789999999999875
No 7
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=99.68 E-value=8.6e-18 Score=161.79 Aligned_cols=68 Identities=37% Similarity=0.891 Sum_probs=60.1
Q ss_pred ccCCCCcccCCCCCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhcc
Q 011753 208 DAEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (478)
Q Consensus 208 ~~~~p~W~~d~~~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (478)
...+|.|+++ ..|+.|+++|+++ +||||||+||+|||+.||.++.++|. ++..+|+|||+.||..|+.
T Consensus 152 ~~~~~~W~~~---~~C~~C~~~F~~~-~rrhhCr~CG~v~C~~Cs~~~~~~~~-~~~~~~~RvC~~C~~~l~~ 219 (220)
T 1dvp_A 152 ADTAPNWADG---RVCHRCRVEFTFT-NRKHHCRNCGQVFCGQCTAKQCPLPK-YGIEKEVRVCDGCFAALQR 219 (220)
T ss_dssp CSCCCCCCCC---SBCTTTCCBCCSS-SCCEECTTTCCEECSTTSCEEEEEGG-GTEEEEEEECHHHHHHHHH
T ss_pred ccccccCCCC---CccCCCCCccCCc-ccccccCCcCCEEChHHhCCeeecCc-CCCCCCCEeCHHHHHHHhc
Confidence 3458899985 6999999999976 89999999999999999999999984 5667899999999998753
No 8
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=99.67 E-value=1.2e-17 Score=161.60 Aligned_cols=70 Identities=37% Similarity=0.901 Sum_probs=61.1
Q ss_pred cccCCCCcccCCCCCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhccc
Q 011753 207 LDAEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQSV 281 (478)
Q Consensus 207 ~~~~~p~W~~d~~~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~~ 281 (478)
....+|.|+++ ..|+.|+++|+++ +||||||+||+|||+.||.++.++|. ++..+|+|||+.||..|+..
T Consensus 154 ~~~~~p~W~~~---~~C~~C~~~F~~~-~RrhHCR~CG~v~C~~Cs~~~~~~p~-~~~~~~~RVC~~C~~~l~~~ 223 (226)
T 3zyq_A 154 AAERAPDWVDA---EECHRCRVQFGVM-TRKHHCRACGQIFCGKCSSKYSTIPK-FGIEKEVRVCEPCYEQLNRK 223 (226)
T ss_dssp CCCCCCCCCCC---SBCTTTCCBCBTT-BCCEECTTTCCEECTTTCCEEEEEGG-GTEEEEEEECHHHHHHHCC-
T ss_pred hcccccccccC---CCCcCcCCCCCcc-ccccccCCCcCEeChhhcCCcccCCC-CCCCCCCEeCHHHHHHhhhh
Confidence 34568999985 5899999999976 89999999999999999999999984 45678999999999998753
No 9
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=99.65 E-value=3.8e-17 Score=136.34 Aligned_cols=61 Identities=30% Similarity=0.601 Sum_probs=54.1
Q ss_pred CCCCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhccc
Q 011753 218 SSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQSV 281 (478)
Q Consensus 218 ~~~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~~ 281 (478)
.++..|+.|+++|+++ +||||||+||+|||+.||.++++||. + ..+|+|||+.||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~-~RrHHCR~CG~vfC~~Cs~~~~~lp~-~-g~~~~RVC~~C~~~l~~~ 67 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLF-KKEYGCKNCGRAFCNGCLSFSALVPR-A-GNTQQKVCKQCHTILTRG 67 (88)
T ss_dssp CCCSBCTTTCCBCCSS-SCEEECSSSCCEEETTTSCEEEEETT-T-TSEEEEECHHHHHHHHHC
T ss_pred CcCCCCcCcCCcccCc-cccccCCCCCCEEChhHcCCceeccc-c-CCCcCEECHHHHHHHHhc
Confidence 4578999999999986 89999999999999999999999984 2 357999999999998753
No 10
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=99.57 E-value=3.3e-16 Score=137.65 Aligned_cols=60 Identities=22% Similarity=0.431 Sum_probs=43.2
Q ss_pred CCCcccCCCCCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhcc
Q 011753 211 PPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (478)
Q Consensus 211 ~p~W~~d~~~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (478)
.+.|.||.++..|+.|+.+|+++ +||||||+||+|||+.||.++.+ ++|||+.||..+..
T Consensus 10 ~~~~~Pd~~~~~C~~C~~~Fs~~-~RkHHCR~CG~ifC~~Cs~~~~~---------~vRVC~~C~~~~~~ 69 (120)
T 1y02_A 10 SSFPSPTGLEPSCKSCGAHFANT-ARKQTCLDCKKNFCMTCSSQVGN---------GPRLCLLCQRFRAT 69 (120)
T ss_dssp ----------CCCTTTCCCCSSG-GGCEECTTTCCEECGGGEEC-------------CCEEHHHHHHHHT
T ss_pred ccCCcCccccCcccCcCCccccc-cccccCCCCCCeeCHHHhCCCCC---------CceECHHHHHHHhc
Confidence 34788999999999999999976 89999999999999999988753 49999999998754
No 11
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=99.55 E-value=3e-16 Score=163.43 Aligned_cols=70 Identities=33% Similarity=0.738 Sum_probs=0.0
Q ss_pred ccCCCCcccCCCCCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhcc
Q 011753 208 DAEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (478)
Q Consensus 208 ~~~~p~W~~d~~~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (478)
...+|.|+||.++..|+.|+.+|+++ +||||||+||++||..||.++.++| +...+|+|||+.||..|..
T Consensus 363 ~~~~p~w~~~~~~~~c~~c~~~f~~~-~r~h~Cr~Cg~~~C~~Cs~~~~~~~--~~~~~~~rvC~~C~~~l~~ 432 (434)
T 3mpx_A 363 GERPPTLVPVTHVMMCMNCGCDFSLT-LRRHHCHACGKIVCRNCSRNKYPLK--YLKDRMAKVCDGCFGELKK 432 (434)
T ss_dssp -------------------------------------------------------------------------
T ss_pred ccCCCcCCCcccCCcCCCcCCCCCCc-chhhhcccCcCEeehhhCCCeeeCC--CCCCCcCEecHHHHHHHHh
Confidence 44689999999999999999999975 8999999999999999999998887 3457899999999998854
No 12
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=97.57 E-value=2e-05 Score=81.19 Aligned_cols=47 Identities=13% Similarity=0.287 Sum_probs=41.1
Q ss_pred ccCCCCcccCCCCCcCCCCCccCcccccccccccCCCceEcCCCCCC
Q 011753 208 DAEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKG 254 (478)
Q Consensus 208 ~~~~p~W~~d~~~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~ 254 (478)
....+.|.++...+.|+.|+..|.-+++|+||||.||.++|..|+..
T Consensus 345 ~~h~f~~~~~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~ 391 (406)
T 2vrw_B 345 NGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR 391 (406)
T ss_dssp GGCCEEEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGG
T ss_pred CCCCCccccCCCCCCCccccchhceeCCCCCCCCCCcCccchhhhhh
Confidence 34567899999999999999999644589999999999999999863
No 13
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=95.65 E-value=0.0054 Score=54.55 Aligned_cols=54 Identities=20% Similarity=0.576 Sum_probs=44.3
Q ss_pred CCCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhh
Q 011753 219 SASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVR 277 (478)
Q Consensus 219 ~~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~ 277 (478)
....|..|.++|+++..+.|-|..|..-||.+|.... + .....+.=+|..|+..
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~---~--~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET---S--NNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC---C--CSSSSCCEEEHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCcc---C--CCCCccceechhhHHH
Confidence 3688999999998777889999999999999998542 2 1235678899999975
No 14
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=95.39 E-value=0.0055 Score=55.69 Aligned_cols=51 Identities=25% Similarity=0.657 Sum_probs=43.5
Q ss_pred CCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhh
Q 011753 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRL 278 (478)
Q Consensus 220 ~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L 278 (478)
...|..|.++|.++..+.+-|..|..-||.+|+.. +| ..+.=+|..|+..-
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~---~~-----~~~~W~C~vC~k~r 118 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHA---HP-----EEQGWLCDPCHLAR 118 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEEC---CS-----SSSSCEEHHHHHHH
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhcccccc---cC-----CCCcEeeHHHHHHH
Confidence 57999999999998889999999999999999832 22 34688999999763
No 15
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=93.92 E-value=0.023 Score=61.39 Aligned_cols=45 Identities=13% Similarity=0.304 Sum_probs=37.8
Q ss_pred CCCCcccCCCCCcCCCCCccCcccccccccccCCCceEcCCCCCC
Q 011753 210 EPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKG 254 (478)
Q Consensus 210 ~~p~W~~d~~~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~ 254 (478)
....|.+....+.|..|+..|.-++++.|||+.||.++|..|...
T Consensus 519 H~F~~~~~~~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~ 563 (587)
T 3ky9_A 519 HDFQMFSFEETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGR 563 (587)
T ss_dssp CCEEEECCSSCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGG
T ss_pred CceeEEeCCCCcccccccccccccccCCcCCCCCCCccchhhhhc
Confidence 345677788899999999998444579999999999999999864
No 16
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=90.01 E-value=0.33 Score=39.76 Aligned_cols=32 Identities=31% Similarity=0.815 Sum_probs=25.5
Q ss_pred CCCCCcCCCCCccCcccccccccccCCCceEcCCC
Q 011753 217 DSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGEC 251 (478)
Q Consensus 217 d~~~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~C 251 (478)
......|..|++...++ -..+|| ||.+||...
T Consensus 22 k~~~~rC~~C~kkvgl~--~~f~Cr-Cg~~FC~~H 53 (85)
T 1wff_A 22 KKIMKHCFLCGKKTGLA--TSFECR-CGNNFCASH 53 (85)
T ss_dssp CCCCCBCSSSCCBCSSS--SCEECT-TCCEECTTT
T ss_pred cccCccchhhCCeeccc--CCeEcC-CCCEecccC
Confidence 34568999999998863 468998 999998754
No 17
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.05 E-value=0.38 Score=38.57 Aligned_cols=51 Identities=24% Similarity=0.530 Sum_probs=42.2
Q ss_pred CCCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhh
Q 011753 219 SASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRL 278 (478)
Q Consensus 219 ~~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L 278 (478)
....|..|+.+|.+|+.|---|+.|-+-||.+|-.. . ..+.=.|..|+...
T Consensus 24 ~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~---~------~~~~W~C~VC~k~~ 74 (76)
T 2csz_A 24 SDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQ---E------SNGTWRCKVCSGPS 74 (76)
T ss_dssp CCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEE---C------STTCEEEHHHHSSC
T ss_pred CccchhhhCccccccccCCCcCcccChhhccccccc---C------CCCCEEEeeCchhh
Confidence 367899999999999999999999999999999632 1 12678899998754
No 18
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=86.84 E-value=0.48 Score=36.81 Aligned_cols=29 Identities=34% Similarity=0.880 Sum_probs=23.4
Q ss_pred CCCcCCCCCccCcccccccccccCCCceEcCCC
Q 011753 219 SASACMLCGVRFHPIMCSRHHCRFCGGIFCGEC 251 (478)
Q Consensus 219 ~~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~C 251 (478)
....|..|++...++ ..+|| ||..||...
T Consensus 14 ~~~rC~~C~kkvgl~---~f~Cr-Cg~~FC~~H 42 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLT---GFMCR-CGTTFCGSH 42 (64)
T ss_dssp SCCCCTTTCCCCCTT---CEECS-SSCEECTTT
T ss_pred cCCcChhhCCccCcc---CEEee-cCCEecccc
Confidence 357899999988853 58896 999998754
No 19
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=85.90 E-value=0.8 Score=36.52 Aligned_cols=30 Identities=37% Similarity=0.951 Sum_probs=24.0
Q ss_pred CCCCcCCCCCccCcccccccccccCCCceEcCCC
Q 011753 218 SSASACMLCGVRFHPIMCSRHHCRFCGGIFCGEC 251 (478)
Q Consensus 218 ~~~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~C 251 (478)
.....|..|++...++ ..+|| ||..||...
T Consensus 23 ~~~~RC~~C~kkvgL~---~f~Cr-Cg~~FCs~H 52 (74)
T 1wfp_A 23 STATRCLSCNKKVGVT---GFKCR-CGSTFCGTH 52 (74)
T ss_dssp CCCCBCSSSCCBCTTT---CEECT-TSCEECTTT
T ss_pred ccCccchhhcCccccc---ceEec-cCCEecccc
Confidence 3468999999988853 58995 999998753
No 20
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=85.50 E-value=0.85 Score=36.38 Aligned_cols=29 Identities=31% Similarity=0.930 Sum_probs=23.5
Q ss_pred CCCcCCCCCccCcccccccccccCCCceEcCCC
Q 011753 219 SASACMLCGVRFHPIMCSRHHCRFCGGIFCGEC 251 (478)
Q Consensus 219 ~~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~C 251 (478)
....|..|+++..++ ..+|| ||.+||...
T Consensus 24 ~~nRC~~CrKkvgL~---gf~Cr-Cg~~FCs~H 52 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLT---GFDCR-CGNLFCGLH 52 (74)
T ss_dssp CTTBCSSSCCBCGGG---CEECT-TSCEECSSS
T ss_pred cCCcChhhCCccccc---CeecC-CCCEechhc
Confidence 357899999988854 48999 999998753
No 21
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.26 E-value=0.26 Score=36.08 Aligned_cols=35 Identities=17% Similarity=0.392 Sum_probs=27.6
Q ss_pred CCcccCCCCCcCCCCCccCccc-ccccccccCCCceE
Q 011753 212 PRWLADSSASACMLCGVRFHPI-MCSRHHCRFCGGIF 247 (478)
Q Consensus 212 p~W~~d~~~~~C~~C~~~F~~l-~~RrHHCR~CG~v~ 247 (478)
+.|+.- ....|+.|++.|+++ ..|+|-|..||..+
T Consensus 5 ~~~~~~-~~~~CPrCn~~f~~~~sLr~HmkycCp~~v 40 (49)
T 2e72_A 5 SSGQDG-GRKICPRCNAQFRVTEALRGHMCYCCPEMV 40 (49)
T ss_dssp SSSCCS-SCCCCTTTCCCCSSHHHHHHHHHHHCTTTC
T ss_pred cccccC-CceeCCcccccccchHHHHhhhhhcCcchh
Confidence 467654 688999999999953 25889999998865
No 22
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=80.34 E-value=0.21 Score=38.27 Aligned_cols=31 Identities=23% Similarity=0.645 Sum_probs=25.6
Q ss_pred CCcCCCCCccCcccccccccccCCCceEcCCCC
Q 011753 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECS 252 (478)
Q Consensus 220 ~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS 252 (478)
...|..|+++|.. ..+..|..|+.+||-.|=
T Consensus 15 ~~~C~~C~~~~~~--~~~y~C~~C~~~FC~dCD 45 (59)
T 1z60_A 15 ERFCYGCQGELKD--QHVYVCAVCQNVFCVDCD 45 (59)
T ss_dssp CCEETTTTEECTT--SEEECCTTTTCCBCHHHH
T ss_pred CCcccccCcccCC--CccEECCccCcCcccchh
Confidence 3469999999963 345889999999999995
No 23
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=78.99 E-value=1.5 Score=34.02 Aligned_cols=28 Identities=29% Similarity=0.867 Sum_probs=22.7
Q ss_pred CCcCCCCCccCcccccccccccCCCceEcCCC
Q 011753 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGEC 251 (478)
Q Consensus 220 ~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~C 251 (478)
...|..|++...++ ..+| .||..||...
T Consensus 15 ~~rC~~C~kkvgl~---~f~C-rCg~~FC~~H 42 (64)
T 1wg2_A 15 NNRCFSCNKKVGVM---GFKC-KCGSTFCGSH 42 (64)
T ss_dssp SCSCTTTCCCCTTS---CEEC-TTSCEECSSS
T ss_pred CCcChhhCCccccc---CeEe-ecCCEecccC
Confidence 57899999987753 5889 5999998754
No 24
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=73.21 E-value=3.6 Score=31.38 Aligned_cols=52 Identities=29% Similarity=0.757 Sum_probs=39.5
Q ss_pred CCCcCCCCCc-cCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhh
Q 011753 219 SASACMLCGV-RFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVR 277 (478)
Q Consensus 219 ~~~~C~~C~~-~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~ 277 (478)
+...|.+|.+ +|.- ---|.|.+|-.-||..|.-+ .+| ..++-.-||+.|..+
T Consensus 8 d~~~C~iC~KTKFAD--G~Gh~C~yCk~r~CaRCGg~-v~l----r~~k~~WvC~lC~k~ 60 (62)
T 2a20_A 8 DAPTCGICHKTKFAD--GCGHNCSYCQTKFCARCGGR-VSL----RSNKVMWVCNLCRKQ 60 (62)
T ss_dssp CCCCCSSSSCSCCCS--SCCEEBTTTCCEECTTSEEE-EES----STTCEEEEEHHHHHH
T ss_pred Ccchhhhhccceecc--CCCccccccCCeeecccCCE-eee----cCCeEEEEehhhhhc
Confidence 4678999997 3442 34688999999999999854 444 346778899999764
No 25
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.50 E-value=2.1 Score=33.51 Aligned_cols=32 Identities=25% Similarity=0.651 Sum_probs=24.5
Q ss_pred CCCCCcCCCCCccCcccccc--cccccCCCceEcCCC
Q 011753 217 DSSASACMLCGVRFHPIMCS--RHHCRFCGGIFCGEC 251 (478)
Q Consensus 217 d~~~~~C~~C~~~F~~l~~R--rHHCR~CG~v~C~~C 251 (478)
......|..|++.-.+. . -.+| .||.+||...
T Consensus 12 ~~~~~rC~~C~kk~gL~--~~egf~C-rCg~~FC~~H 45 (67)
T 1x4w_A 12 QKSRRRCFQCQTKLELV--QQELGSC-RCGYVFCMLH 45 (67)
T ss_dssp CSCTTBCSSSCCBCCHH--HHHHHCC-SSSCCCCTTT
T ss_pred CccCCcchhhCCeeccc--ccCceEe-cCCCEehhcc
Confidence 33578999999998853 3 3789 7999998753
No 26
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=72.26 E-value=1.6 Score=34.44 Aligned_cols=28 Identities=21% Similarity=0.535 Sum_probs=20.4
Q ss_pred CCcCCCCCccCcccccccccccCCCc-eE
Q 011753 220 ASACMLCGVRFHPIMCSRHHCRFCGG-IF 247 (478)
Q Consensus 220 ~~~C~~C~~~F~~l~~RrHHCR~CG~-v~ 247 (478)
.-.|..|+..|.+...-.-||+.||. |+
T Consensus 28 ~Y~C~~CG~~~e~~~~d~irCp~CG~RIL 56 (70)
T 1twf_L 28 KYICAECSSKLSLSRTDAVRCKDCGHRIL 56 (70)
T ss_dssp CEECSSSCCEECCCTTSTTCCSSSCCCCC
T ss_pred EEECCCCCCcceeCCCCCccCCCCCceEe
Confidence 35799999998864334568888887 54
No 27
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=64.04 E-value=4.6 Score=32.70 Aligned_cols=56 Identities=16% Similarity=0.389 Sum_probs=37.8
Q ss_pred CcCCCCCccCcccccccccccCCCce-----EcCCCCCCeeeccccCCCCCceeeCccchhhhcc
Q 011753 221 SACMLCGVRFHPIMCSRHHCRFCGGI-----FCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (478)
Q Consensus 221 ~~C~~C~~~F~~l~~RrHHCR~CG~v-----~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (478)
..|+.|+.....- .+.+||..|++- ||..|-..-..++. - ....--|+.|...+++
T Consensus 3 ~~CP~C~~~l~~~-~~~~~C~~C~~~~~~~afCPeCgq~Le~lkA--C-GA~~yFC~~C~~LiSk 63 (81)
T 2jrp_A 3 ITCPVCHHALERN-GDTAHCETCAKDFSLQALCPDCRQPLQVLKA--C-GAVDYFCQNGHGLISK 63 (81)
T ss_dssp CCCSSSCSCCEEC-SSEEECTTTCCEEEEEEECSSSCSCCCEEEE--T-TEEEECCTTTTCCCCT
T ss_pred CCCCCCCCccccC-CCceECccccccCCCcccCcchhhHHHHHHh--c-CCcCeeeccCCCEeec
Confidence 4688899887753 567789999874 78888765433421 1 1236678888877765
No 28
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=63.58 E-value=4.3 Score=28.74 Aligned_cols=50 Identities=20% Similarity=0.360 Sum_probs=33.2
Q ss_pred CCCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhh
Q 011753 219 SASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRL 278 (478)
Q Consensus 219 ~~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L 278 (478)
....|.+|...|..- .+......||.+||..|....... ...|-.|...+
T Consensus 4 ~~~~C~IC~~~~~~~-~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHTS-RVVAHVLPCGHLLHRTCYEEMLKE---------GYRCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCTT-TSCEEECTTSCEEETTHHHHHHHH---------TCCCTTSCCSS
T ss_pred CCCcCcccChhhcCC-CcCeEecCCCCcccHHHHHHHHHc---------CCcCCCCCCcC
Confidence 356899999988531 234445679999999998654321 15677776543
No 29
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=56.85 E-value=7.2 Score=27.59 Aligned_cols=48 Identities=19% Similarity=0.412 Sum_probs=30.9
Q ss_pred CCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhh
Q 011753 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVR 277 (478)
Q Consensus 220 ~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~ 277 (478)
...|.+|...|..- ..-.....||.+||..|..... +....|-.|...
T Consensus 5 ~~~C~IC~~~~~~~-~~~~~~~~C~H~f~~~Ci~~w~---------~~~~~CP~Cr~~ 52 (55)
T 1iym_A 5 GVECAVCLAELEDG-EEARFLPRCGHGFHAECVDMWL---------GSHSTCPLCRLT 52 (55)
T ss_dssp SCCCTTTCCCCCTT-SCCEECSSSCCEECTTHHHHTT---------TTCCSCSSSCCC
T ss_pred CCcCccCCccccCC-CceEECCCCCCcccHHHHHHHH---------HcCCcCcCCCCE
Confidence 46799999988741 1222233699999999975432 113467777654
No 30
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=55.59 E-value=3.1 Score=34.02 Aligned_cols=47 Identities=21% Similarity=0.562 Sum_probs=33.8
Q ss_pred CcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhc
Q 011753 221 SACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (478)
Q Consensus 221 ~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (478)
-.|.+|...|. ....|-.||++||..|........ ...|-.|...+.
T Consensus 23 ~~C~IC~~~~~----~p~~~~~CgH~FC~~Ci~~~~~~~--------~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 23 FRCFICMEKLR----DARLCPHCSKLCCFSCIRRWLTEQ--------RAQCPHCRAPLQ 69 (100)
T ss_dssp TBCTTTCSBCS----SEEECTTTCCEEEHHHHHHHHHHT--------CSBCTTTCCBCC
T ss_pred CCCccCCcccc----CccccCCCCChhhHHHHHHHHHHC--------cCCCCCCCCcCC
Confidence 46999998775 345668999999999986543221 167888887663
No 31
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=55.18 E-value=9.9 Score=27.51 Aligned_cols=44 Identities=16% Similarity=0.362 Sum_probs=29.8
Q ss_pred CCCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhc
Q 011753 219 SASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (478)
Q Consensus 219 ~~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (478)
+...|.+|...|..- .--.||+.||..|... ....|-.|...+.
T Consensus 5 ~~~~C~IC~~~~~~p-----~~l~CgH~fC~~Ci~~------------~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 5 QFLRCQQCQAEAKCP-----KLLPCLHTLCSGCLEA------------SGMQCPICQAPWP 48 (56)
T ss_dssp CCSSCSSSCSSCBCC-----SCSTTSCCSBTTTCSS------------SSSSCSSCCSSSS
T ss_pred cCCCceEeCCccCCe-----EEcCCCCcccHHHHcc------------CCCCCCcCCcEee
Confidence 456799999877632 1236999999999754 1345777765543
No 32
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=53.85 E-value=10 Score=28.67 Aligned_cols=35 Identities=29% Similarity=0.617 Sum_probs=26.2
Q ss_pred CCcCCCCCccCcccc-cccccccC--CCceEcCCCCCC
Q 011753 220 ASACMLCGVRFHPIM-CSRHHCRF--CGGIFCGECSKG 254 (478)
Q Consensus 220 ~~~C~~C~~~F~~l~-~RrHHCR~--CG~v~C~~CS~~ 254 (478)
...|+.|+...-... --+-.|++ ||..||..|...
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~ 43 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGP 43 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSC
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCC
Confidence 578999998766431 22456998 999999999854
No 33
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=53.14 E-value=5.4 Score=29.67 Aligned_cols=29 Identities=24% Similarity=0.568 Sum_probs=19.2
Q ss_pred CcCCCCCccCccc-----------ccccccccCCCceEcC
Q 011753 221 SACMLCGVRFHPI-----------MCSRHHCRFCGGIFCG 249 (478)
Q Consensus 221 ~~C~~C~~~F~~l-----------~~RrHHCR~CG~v~C~ 249 (478)
-.|..|++.|... ..|.+.|..||+.|-.
T Consensus 5 y~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~ 44 (60)
T 4gzn_C 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRD 44 (60)
T ss_dssp EECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESS
T ss_pred ccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCC
Confidence 3688888888631 1356777777777643
No 34
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=53.01 E-value=5.8 Score=30.23 Aligned_cols=54 Identities=19% Similarity=0.357 Sum_probs=35.6
Q ss_pred CCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhcc
Q 011753 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (478)
Q Consensus 220 ~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (478)
...|.+|...|.-- .. -.||++||..|......... ........|-.|...+..
T Consensus 12 ~~~C~IC~~~~~~p--~~---l~CgH~fC~~Ci~~~~~~~~--~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 12 EVTCPICLELLTEP--LS---LDCGHSLCRACITVSNKEAV--TSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCEETTTTEECSSC--CC---CSSSCCCCHHHHSCCCCCCS--SSCCCCCCCSSSCCCCCS
T ss_pred CCCCcCCCcccCCe--eE---CCCCCHHHHHHHHHHHHhcc--cCCCCCCcCCCCCCcCCH
Confidence 46799999987632 11 26999999999876543211 112346789989877653
No 35
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.18 E-value=3.5 Score=31.10 Aligned_cols=49 Identities=20% Similarity=0.350 Sum_probs=33.4
Q ss_pred CCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhc
Q 011753 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (478)
Q Consensus 220 ~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (478)
...|.+|...|.-- .. -.||++||..|...... .......|-.|...+.
T Consensus 20 ~~~C~IC~~~~~~~--~~---~~CgH~fC~~Ci~~~~~------~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 20 EVICPICLDILQKP--VT---IDCGHNFCLKCITQIGE------TSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCBCTTTCSBCSSE--EE---CTTCCEEEHHHHHHHCS------SSCSCCCCSSSCCCCC
T ss_pred CCEeccCCcccCCe--EE---cCCCChhhHHHHHHHHH------cCCCCCCCCCCCCcCC
Confidence 56899999977632 11 27999999999865432 1124567888877654
No 36
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=51.02 E-value=8.2 Score=30.93 Aligned_cols=33 Identities=24% Similarity=0.533 Sum_probs=23.8
Q ss_pred CcCCCCCccCccc-ccccccccCCCceEcCCCCC
Q 011753 221 SACMLCGVRFHPI-MCSRHHCRFCGGIFCGECSK 253 (478)
Q Consensus 221 ~~C~~C~~~F~~l-~~RrHHCR~CG~v~C~~CS~ 253 (478)
.-|+.|+..|..- ..++..|..||..||..|-.
T Consensus 26 ~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~ 59 (86)
T 2ct7_A 26 LWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKR 59 (86)
T ss_dssp ECCSSSCCCEECCCSCSCEECTTTCCEECSSSCS
T ss_pred eECcCCCchheecCCCCceEeCCCCCccccccCC
Confidence 3477888766321 13457899999999999975
No 37
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=50.84 E-value=10 Score=30.13 Aligned_cols=12 Identities=33% Similarity=0.894 Sum_probs=9.4
Q ss_pred CCcCCCCCccCc
Q 011753 220 ASACMLCGVRFH 231 (478)
Q Consensus 220 ~~~C~~C~~~F~ 231 (478)
.-.|..|++.|.
T Consensus 28 ~h~C~~Cgk~F~ 39 (85)
T 2lv2_A 28 CHLCPVCGESFA 39 (85)
T ss_dssp TEECTTSCCEES
T ss_pred CEECCCCCCCcC
Confidence 457888888887
No 38
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.93 E-value=13 Score=28.62 Aligned_cols=26 Identities=27% Similarity=0.641 Sum_probs=20.2
Q ss_pred CCcCCC--CCccCcccccccccccCCCceEcC
Q 011753 220 ASACML--CGVRFHPIMCSRHHCRFCGGIFCG 249 (478)
Q Consensus 220 ~~~C~~--C~~~F~~l~~RrHHCR~CG~v~C~ 249 (478)
...|.. |.+. .+ -..+|+.|+..||.
T Consensus 12 ~~~Cs~~~Ck~~-~l---l~f~C~~C~~~FC~ 39 (63)
T 1x4v_A 12 TNKCERAGCRQR-EM---MKLTCERCSRNFCI 39 (63)
T ss_dssp CCCCCSTTCCCC-CS---SCCBCSSSCCBCCH
T ss_pred CCCCCccCCCCC-Cc---cceECCCCCcccCc
Confidence 467887 9986 33 24799999999986
No 39
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=47.84 E-value=6.9 Score=30.84 Aligned_cols=53 Identities=21% Similarity=0.414 Sum_probs=33.8
Q ss_pred CCCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhcc
Q 011753 219 SASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (478)
Q Consensus 219 ~~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (478)
+...|++|-..|+.--.+-.-| .||+.||..|-.... ......|-.|...+..
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~-~CGH~fC~~Cl~~~~--------~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPC-TCGYQICRFCWHRIR--------TDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSS-TTSCCCCHHHHHHHT--------TSSCSBCTTTCCBCSS
T ss_pred cCCcCCccCccCcccccccccc-CCCCCcCHHHHHHHH--------hcCCCCCCCCCCccCC
Confidence 3467999999886311112224 599999999975321 1134678888876654
No 40
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=47.76 E-value=13 Score=28.33 Aligned_cols=51 Identities=20% Similarity=0.343 Sum_probs=34.0
Q ss_pred CCCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhcc
Q 011753 219 SASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (478)
Q Consensus 219 ~~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (478)
....|.+|...|..- ....--.||++||..|....+. ..+.|-.|...+..
T Consensus 14 ~~~~C~IC~~~~~~~--~~~~~~~C~H~fc~~Ci~~~~~---------~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 14 SGLECPVCKEDYALG--ESVRQLPCNHLFHDSCIVPWLE---------QHDSCPVCRKSLTG 64 (78)
T ss_dssp SSCCCTTTTSCCCTT--SCEEECTTSCEEETTTTHHHHT---------TTCSCTTTCCCCCC
T ss_pred CCCCCeeCCccccCC--CCEEEeCCCCeecHHHHHHHHH---------cCCcCcCcCCccCC
Confidence 356899999988631 1111225999999999865431 12579889876654
No 41
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.62 E-value=5.9 Score=30.18 Aligned_cols=50 Identities=18% Similarity=0.418 Sum_probs=34.2
Q ss_pred CCCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhc
Q 011753 219 SASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (478)
Q Consensus 219 ~~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (478)
+...|.+|...|.. ......-.||++||..|....+.. ...|-.|...+.
T Consensus 22 ~~~~C~IC~~~~~~--~~~~~~l~C~H~fh~~Ci~~w~~~---------~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 22 EQTLCVVCMCDFES--RQLLRVLPCNHEFHAKCVDKWLKA---------NRTCPICRADSG 71 (75)
T ss_dssp SCCEETTTTEECCB--TCEEEEETTTEEEETTHHHHHHHH---------CSSCTTTCCCCC
T ss_pred CCCCCeECCcccCC--CCeEEEECCCCHhHHHHHHHHHHc---------CCcCcCcCCcCC
Confidence 45689999998873 233344569999999998654321 246888876543
No 42
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=47.55 E-value=7.6 Score=32.42 Aligned_cols=43 Identities=23% Similarity=0.437 Sum_probs=29.4
Q ss_pred CcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhh
Q 011753 221 SACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRL 278 (478)
Q Consensus 221 ~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L 278 (478)
-.|.+|...|.- ..--..||++||..|...... ..|..|...+
T Consensus 23 ~~C~IC~~~~~~----pv~~~~CgH~fC~~Ci~~~~~-----------~~CP~Cr~~~ 65 (117)
T 1jm7_B 23 LRCSRCTNILRE----PVCLGGCEHIFCSNCVSDCIG-----------TGCPVCYTPA 65 (117)
T ss_dssp TSCSSSCSCCSS----CBCCCSSSCCBCTTTGGGGTT-----------TBCSSSCCBC
T ss_pred CCCCCCChHhhC----ccEeCCCCCHHHHHHHHHHhc-----------CCCcCCCCcC
Confidence 569999886642 122227999999999865321 5688887654
No 43
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=47.18 E-value=9.6 Score=28.34 Aligned_cols=52 Identities=15% Similarity=0.405 Sum_probs=34.5
Q ss_pred CCCCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhcc
Q 011753 218 SSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (478)
Q Consensus 218 ~~~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (478)
.....|.+|...|.. ......-.||++||..|....... ...|-.|...+..
T Consensus 12 ~~~~~C~IC~~~~~~--~~~~~~~~C~H~fc~~Ci~~~~~~---------~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEE--GEDVRRLPCMHLFHQVCVDQWLIT---------NKKCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCS--SSCEEECTTSCEEEHHHHHHHHHH---------CSBCTTTCSBSCS
T ss_pred CCCCCCeeCCccccC--CCcEEEeCCCCHHHHHHHHHHHHc---------CCCCcCcCccccC
Confidence 345689999998852 233344569999999998654321 2348888776643
No 44
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=45.70 E-value=14 Score=27.20 Aligned_cols=13 Identities=23% Similarity=0.493 Sum_probs=10.4
Q ss_pred CCcCCCCCccCcc
Q 011753 220 ASACMLCGVRFHP 232 (478)
Q Consensus 220 ~~~C~~C~~~F~~ 232 (478)
.-.|..|++.|..
T Consensus 17 ~~~C~~C~k~f~~ 29 (74)
T 2lce_A 17 PYKCDRCQASFRY 29 (74)
T ss_dssp SBCCTTSSCCBSC
T ss_pred CeECCCCCceeCC
Confidence 4679999999973
No 45
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=45.58 E-value=10 Score=28.91 Aligned_cols=48 Identities=21% Similarity=0.534 Sum_probs=31.8
Q ss_pred CCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhh
Q 011753 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRL 278 (478)
Q Consensus 220 ~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L 278 (478)
...|.+|...|.- ...-..||++||..|......- ...+.|-.|...+
T Consensus 15 ~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~-------~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 15 ELLCLICKDIMTD----AVVIPCCGNSYCDECIRTALLE-------SDEHTCPTCHQND 62 (74)
T ss_dssp GGSCSSSCCCCTT----CEECSSSCCEECTTHHHHHHHH-------SSSSCCSSSCCSS
T ss_pred CCCCcCCChHHhC----CeEcCCCCCHHHHHHHHHHHHh-------cCCCcCCCCCCcC
Confidence 4579999887753 2233459999999998654321 1245788887643
No 46
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=45.33 E-value=11 Score=26.06 Aligned_cols=12 Identities=33% Similarity=0.863 Sum_probs=9.1
Q ss_pred CcCCCCCccCcc
Q 011753 221 SACMLCGVRFHP 232 (478)
Q Consensus 221 ~~C~~C~~~F~~ 232 (478)
-.|..|++.|..
T Consensus 5 ~~C~~C~~~f~~ 16 (57)
T 3uk3_C 5 RECSYCGKFFRS 16 (57)
T ss_dssp CBCTTTCCBCSC
T ss_pred ccCCCCcchhCC
Confidence 468888888863
No 47
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.11 E-value=9.8 Score=29.74 Aligned_cols=60 Identities=17% Similarity=0.287 Sum_probs=39.8
Q ss_pred CCCcccCCCCCcCCCCCccCccc---------ccc-cccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhc
Q 011753 211 PPRWLADSSASACMLCGVRFHPI---------MCS-RHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (478)
Q Consensus 211 ~p~W~~d~~~~~C~~C~~~F~~l---------~~R-rHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (478)
.+.|.-|.+...|.+|...|... ... ...-..||.+|+..|-...+. ....|..|...+.
T Consensus 6 ~~~w~~~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~---------~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 6 SGMWSWDVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK---------QNNRCPLCQQDWV 75 (81)
T ss_dssp CCCCCCSCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT---------TCCBCTTTCCBCC
T ss_pred eEEeeecCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH---------hCCCCCCcCCCcc
Confidence 46788888889999999999531 001 112235999999999765422 1247888876553
No 48
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=44.52 E-value=13 Score=25.57 Aligned_cols=10 Identities=40% Similarity=1.089 Sum_probs=8.0
Q ss_pred cCCCCCccCc
Q 011753 222 ACMLCGVRFH 231 (478)
Q Consensus 222 ~C~~C~~~F~ 231 (478)
.|..|++.|.
T Consensus 3 ~C~~C~~~f~ 12 (57)
T 1bbo_A 3 ICEECGIRXK 12 (57)
T ss_dssp BCTTTCCBCS
T ss_pred cCCCCcCcCC
Confidence 5888888886
No 49
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=44.35 E-value=6.4 Score=33.92 Aligned_cols=32 Identities=25% Similarity=0.525 Sum_probs=21.1
Q ss_pred CCcCCCCCcc-CcccccccccccCCCceEcCCC
Q 011753 220 ASACMLCGVR-FHPIMCSRHHCRFCGGIFCGEC 251 (478)
Q Consensus 220 ~~~C~~C~~~-F~~l~~RrHHCR~CG~v~C~~C 251 (478)
...|+.|++. +........||+.||++|-..-
T Consensus 60 kytCPfCGk~~vKR~avGIW~C~~Cgk~fAGGA 92 (116)
T 3cc2_Z 60 DHACPNCGEDRVDRQGTGIWQCSYCDYKFTGGS 92 (116)
T ss_dssp CEECSSSCCEEEEEEETTEEEETTTCCEEECCS
T ss_pred CCcCCCCCCceeEecCceeEECCCCCCEEECCC
Confidence 4679999972 2111123489999999987654
No 50
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=42.65 E-value=14 Score=25.82 Aligned_cols=10 Identities=30% Similarity=0.846 Sum_probs=7.9
Q ss_pred cCCCCCccCc
Q 011753 222 ACMLCGVRFH 231 (478)
Q Consensus 222 ~C~~C~~~F~ 231 (478)
.|..|++.|.
T Consensus 4 ~C~~C~~~f~ 13 (60)
T 2adr_A 4 VCEVCTRAFA 13 (60)
T ss_dssp CCTTTCCCBS
T ss_pred cCCCCccccC
Confidence 5888888886
No 51
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.70 E-value=13 Score=28.29 Aligned_cols=53 Identities=21% Similarity=0.478 Sum_probs=34.2
Q ss_pred CCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhcc
Q 011753 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (478)
Q Consensus 220 ~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (478)
...|..|...|.-- . . -.||++||..|......... .......|-.|...+..
T Consensus 19 ~~~C~IC~~~~~~p--~--~-~~CgH~fC~~Ci~~~~~~~~---~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 19 EVTCPICLELLTQP--L--S-LDCGHSFCQACLTANHKKSM---LDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCTTTCSCCSSC--B--C-CSSSCCBCTTHHHHHHHHHH---HTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCcccCCc--e--e-CCCCCHHHHHHHHHHHHHhh---cCCCCCcCCCCCCccCH
Confidence 46899999987632 1 1 26999999999865432210 01235678888877653
No 52
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=41.64 E-value=13 Score=27.34 Aligned_cols=48 Identities=23% Similarity=0.382 Sum_probs=33.0
Q ss_pred CCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhcc
Q 011753 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (478)
Q Consensus 220 ~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (478)
...|..|...|.. ....-.||++||..|...... ....|..|...+..
T Consensus 5 ~~~C~IC~~~~~~----~~~~~~C~H~fc~~Ci~~~~~---------~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 5 AERCPICLEDPSN----YSMALPCLHAFCYVCITRWIR---------QNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCSSCCSCCCS----CEEETTTTEEESTTHHHHHHH---------HSCSTTTTCCCCCC
T ss_pred CCCCeeCCccccC----CcEecCCCCeeHHHHHHHHHh---------CcCcCcCCChhhHh
Confidence 5679999988753 123456999999999865431 12478888876654
No 53
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=41.08 E-value=7.4 Score=32.21 Aligned_cols=48 Identities=19% Similarity=0.425 Sum_probs=32.9
Q ss_pred CCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhcc
Q 011753 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (478)
Q Consensus 220 ~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (478)
.-.|.+|...|.-- .. -.||+.||..|...... .....|-.|...+..
T Consensus 15 ~~~C~iC~~~~~~p-~~----~~CgH~fC~~Ci~~~~~--------~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVEP-VT----LPCNHTLCKPCFQSTVE--------KASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSSC-EE----CTTSCEECHHHHCCCCC--------TTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccCce-eE----cCCCCHHhHHHHHHHHh--------HCcCCCCCCCcccCc
Confidence 35799999877632 11 27999999999865421 123679999877654
No 54
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.91 E-value=9.5 Score=27.88 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=23.5
Q ss_pred CCcCCCCCccCcccccccccccCCCceEcCCCCCCee
Q 011753 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRS 256 (478)
Q Consensus 220 ~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~ 256 (478)
...|.+|...|.-- . . -.||++||..|.....
T Consensus 20 ~~~C~IC~~~~~~p--~--~-~~CgH~fC~~Ci~~~~ 51 (63)
T 2ysj_A 20 EVICPICLDILQKP--V--T-IDCGHNFCLKCITQIG 51 (63)
T ss_dssp CCBCTTTCSBCSSC--E--E-CTTSSEECHHHHHHHH
T ss_pred CCCCCcCCchhCCe--E--E-eCCCCcchHHHHHHHH
Confidence 56899999877632 1 1 2799999999986543
No 55
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.86 E-value=9.3 Score=29.63 Aligned_cols=53 Identities=21% Similarity=0.363 Sum_probs=34.8
Q ss_pred CCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhc
Q 011753 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (478)
Q Consensus 220 ~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (478)
...|.+|...|..- .+.-.--.||++||..|......- ......|-.|...+.
T Consensus 15 ~~~C~IC~~~~~~~-~~~~~~~~CgH~fC~~Ci~~~~~~------~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 15 VLECPICMESFTEE-QLRPKLLHCGHTICRQCLEKLLAS------SINGVRCPFCSKITR 67 (88)
T ss_dssp CCBCTTTCCBCCTT-SSCEEECSSSCEEEHHHHHHHHHH------CSSCBCCTTTCCCBC
T ss_pred CCCCccCCcccccc-CCCeEECCCCChhhHHHHHHHHHc------CCCCcCCCCCCCccc
Confidence 46799999988742 221222379999999998654322 113567888887554
No 56
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=40.51 E-value=7.3 Score=28.30 Aligned_cols=28 Identities=25% Similarity=0.636 Sum_probs=16.2
Q ss_pred CcCCCCCccCccc--------ccccccccCCCceEc
Q 011753 221 SACMLCGVRFHPI--------MCSRHHCRFCGGIFC 248 (478)
Q Consensus 221 ~~C~~C~~~F~~l--------~~RrHHCR~CG~v~C 248 (478)
-.|..|++.|... ..+.+.|..||+.|-
T Consensus 15 ~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~ 50 (62)
T 1vd4_A 15 FKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVE 50 (62)
T ss_dssp EECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCE
T ss_pred ccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccc
Confidence 4688888887631 023455666666553
No 57
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=39.53 E-value=17 Score=28.01 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=18.8
Q ss_pred CCcCCCCCccCcccccccccccCCCc
Q 011753 220 ASACMLCGVRFHPIMCSRHHCRFCGG 245 (478)
Q Consensus 220 ~~~C~~C~~~F~~l~~RrHHCR~CG~ 245 (478)
.-.|..|+..|.+-....-.|+.||.
T Consensus 21 ~Y~C~~Cg~~~~l~~~~~iRC~~CG~ 46 (63)
T 3h0g_L 21 IYLCADCGARNTIQAKEVIRCRECGH 46 (63)
T ss_dssp CCBCSSSCCBCCCCSSSCCCCSSSCC
T ss_pred EEECCCCCCeeecCCCCceECCCCCc
Confidence 46799999999853223567888875
No 58
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=39.15 E-value=34 Score=27.12 Aligned_cols=27 Identities=37% Similarity=0.785 Sum_probs=20.8
Q ss_pred CCcCCC--CCccCcccccccccccCCCceEcCC
Q 011753 220 ASACML--CGVRFHPIMCSRHHCRFCGGIFCGE 250 (478)
Q Consensus 220 ~~~C~~--C~~~F~~l~~RrHHCR~CG~v~C~~ 250 (478)
...|.. |++. .+ -...|+.||++||..
T Consensus 14 g~~Cs~~~C~~~-df---lpf~C~~C~~~FC~~ 42 (75)
T 1wys_A 14 GQHCQVQHCRQR-DF---LPFVCDGCSGIFCLE 42 (75)
T ss_dssp CCCCSCTTTCCC-SC---CCEECTTTCCEECST
T ss_pred CCCcCcccCCCc-cc---eeeECcccCcCcCcc
Confidence 467887 9886 32 257899999999975
No 59
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=38.31 E-value=15 Score=25.53 Aligned_cols=11 Identities=36% Similarity=0.845 Sum_probs=8.7
Q ss_pred CcCCCCCccCc
Q 011753 221 SACMLCGVRFH 231 (478)
Q Consensus 221 ~~C~~C~~~F~ 231 (478)
-.|..|++.|.
T Consensus 13 ~~C~~C~k~f~ 23 (54)
T 2eps_A 13 YICQSCGKGFS 23 (54)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCcccC
Confidence 46888888886
No 60
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=37.43 E-value=16 Score=26.83 Aligned_cols=11 Identities=36% Similarity=0.954 Sum_probs=7.9
Q ss_pred CcCCCCCccCc
Q 011753 221 SACMLCGVRFH 231 (478)
Q Consensus 221 ~~C~~C~~~F~ 231 (478)
-.|..|++.|.
T Consensus 15 ~~C~~C~k~f~ 25 (72)
T 1x6e_A 15 YGCVECGKAFS 25 (72)
T ss_dssp EECSSSCCEES
T ss_pred ccCCCCCCccC
Confidence 46777887775
No 61
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.85 E-value=14 Score=27.77 Aligned_cols=48 Identities=17% Similarity=0.360 Sum_probs=33.4
Q ss_pred CCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhcc
Q 011753 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (478)
Q Consensus 220 ~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (478)
...|.+|...|.- ...-..||++||..|...... ..+.|-.|...+..
T Consensus 15 ~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~---------~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 15 YILCSICKGYLID----ATTITECLHTFCKSCIVRHFY---------YSNRCPKCNIVVHQ 62 (72)
T ss_dssp GGSCTTTSSCCSS----CEECSSSCCEECHHHHHHHHH---------HCSSCTTTCCCCCS
T ss_pred CCCCCCCChHHHC----cCEECCCCCHHHHHHHHHHHH---------cCCcCCCcCcccCc
Confidence 4679999887752 223357999999999865432 13578888876654
No 62
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.45 E-value=5.6 Score=29.76 Aligned_cols=46 Identities=22% Similarity=0.506 Sum_probs=33.1
Q ss_pred CCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhcc
Q 011753 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (478)
Q Consensus 220 ~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (478)
...|.+|...|.. .--.||++||..|...... ....|-.|...+..
T Consensus 15 ~~~C~IC~~~~~~------~~~~CgH~fc~~Ci~~~~~---------~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 15 EEECCICMDGRAD------LILPCAHSFCQKCIDKWSD---------RHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCSSSCCSCCS------EEETTTEEECHHHHHHSSC---------CCSSCHHHHHCTTC
T ss_pred CCCCeeCCcCccC------cccCCCCcccHHHHHHHHH---------CcCcCCCcCCcccC
Confidence 5689999987763 2346999999999864321 35678888877654
No 63
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=36.32 E-value=17 Score=26.38 Aligned_cols=11 Identities=18% Similarity=0.507 Sum_probs=7.5
Q ss_pred CcCCCCCccCc
Q 011753 221 SACMLCGVRFH 231 (478)
Q Consensus 221 ~~C~~C~~~F~ 231 (478)
-.|..|++.|.
T Consensus 10 ~~C~~C~k~f~ 20 (70)
T 1x5w_A 10 EKCSECSYSCS 20 (70)
T ss_dssp EECSSSSCEES
T ss_pred eECCCCCcccC
Confidence 35777777775
No 64
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=36.31 E-value=14 Score=26.89 Aligned_cols=28 Identities=29% Similarity=0.465 Sum_probs=17.1
Q ss_pred CCcCCCCCcc-CcccccccccccCCCceE
Q 011753 220 ASACMLCGVR-FHPIMCSRHHCRFCGGIF 247 (478)
Q Consensus 220 ~~~C~~C~~~-F~~l~~RrHHCR~CG~v~ 247 (478)
...|+.|+.. |-.--..|++|..||.+.
T Consensus 19 ~k~CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp SEECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred cccCCCCCCceEEecCCCeEECCCCCCEE
Confidence 4568888863 221113577888888764
No 65
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=36.01 E-value=8.7 Score=33.96 Aligned_cols=48 Identities=21% Similarity=0.418 Sum_probs=33.7
Q ss_pred CcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhcc
Q 011753 221 SACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (478)
Q Consensus 221 ~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (478)
..|.+|...|.- ...+..||++||..|....... ....|-.|...+..
T Consensus 55 ~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~--------~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 55 LMCPICLDMLKN----TMTTKECLHRFCADCIITALRS--------GNKECPTCRKKLVS 102 (165)
T ss_dssp HBCTTTSSBCSS----EEEETTTCCEEEHHHHHHHHHT--------TCCBCTTTCCBCCS
T ss_pred CCCcccChHhhC----cCEeCCCCChhHHHHHHHHHHh--------CcCCCCCCCCcCCC
Confidence 479999887652 2344589999999998654321 24679889877643
No 66
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=35.95 E-value=42 Score=24.66 Aligned_cols=13 Identities=31% Similarity=0.657 Sum_probs=10.1
Q ss_pred CCCcCCCCCccCc
Q 011753 219 SASACMLCGVRFH 231 (478)
Q Consensus 219 ~~~~C~~C~~~F~ 231 (478)
..-.|..|++.|.
T Consensus 17 ~~~~C~~C~~~f~ 29 (77)
T 2cot_A 17 RRYKCDECGKSFS 29 (77)
T ss_dssp CSSBCSSSCCBCS
T ss_pred CCEECCCCCcccC
Confidence 3467889999886
No 67
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.51 E-value=11 Score=28.29 Aligned_cols=47 Identities=23% Similarity=0.515 Sum_probs=31.8
Q ss_pred CCCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhc
Q 011753 219 SASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (478)
Q Consensus 219 ~~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (478)
+...|.+|...|..- .. -.||++||..|...... ....|-.|...+.
T Consensus 14 ~~~~C~IC~~~~~~~----~~-~~CgH~fC~~Ci~~~~~---------~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 14 TVPECAICLQTCVHP----VS-LPCKHVFCYLCVKGASW---------LGKRCALCRQEIP 60 (71)
T ss_dssp SCCBCSSSSSBCSSE----EE-ETTTEEEEHHHHHHCTT---------CSSBCSSSCCBCC
T ss_pred CCCCCccCCcccCCC----EE-ccCCCHHHHHHHHHHHH---------CCCcCcCcCchhC
Confidence 356799999877532 11 26999999999754321 1267888887664
No 68
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=34.71 E-value=14 Score=28.05 Aligned_cols=20 Identities=30% Similarity=0.743 Sum_probs=15.0
Q ss_pred CCcCCCCCccCccccccccc-ccCCC
Q 011753 220 ASACMLCGVRFHPIMCSRHH-CRFCG 244 (478)
Q Consensus 220 ~~~C~~C~~~F~~l~~RrHH-CR~CG 244 (478)
...|..|+. + .+.|| |..||
T Consensus 30 l~~c~~cGe----~-~~~H~vc~~CG 50 (60)
T 3v2d_5 30 LVPCPECKA----M-KPPHTVCPECG 50 (60)
T ss_dssp CEECTTTCC----E-ECTTSCCTTTC
T ss_pred eeECCCCCC----e-ecceEEcCCCC
Confidence 567999998 3 46666 88887
No 69
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=34.19 E-value=19 Score=28.39 Aligned_cols=28 Identities=21% Similarity=0.616 Sum_probs=19.6
Q ss_pred CCcCCCCCccCccccccc----ccccCCCceEcCC
Q 011753 220 ASACMLCGVRFHPIMCSR----HHCRFCGGIFCGE 250 (478)
Q Consensus 220 ~~~C~~C~~~F~~l~~Rr----HHCR~CG~v~C~~ 250 (478)
...|+.|++. . + +|. -||+.||+.|=..
T Consensus 26 ky~C~fCgk~-~-v-kR~a~GIW~C~~C~~~~AGG 57 (72)
T 3jyw_9 26 RYDCSFCGKK-T-V-KRGAAGIWTCSCCKKTVAGG 57 (72)
T ss_dssp CBCCSSCCSS-C-B-SBCSSSCBCCSSSCCCCCCS
T ss_pred CccCCCCCCc-e-e-EecCCCeEECCCCCCEEeCC
Confidence 4679999974 3 3 453 4899999887553
No 70
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=33.70 E-value=15 Score=29.35 Aligned_cols=11 Identities=18% Similarity=0.362 Sum_probs=8.9
Q ss_pred CcCCCCCccC-c
Q 011753 221 SACMLCGVRF-H 231 (478)
Q Consensus 221 ~~C~~C~~~F-~ 231 (478)
-.|..|++.| .
T Consensus 35 ~~C~~C~k~F~~ 46 (96)
T 2ctd_A 35 VSCPTCQAVGRK 46 (96)
T ss_dssp EECTTTCSCEES
T ss_pred cCCCCCCCCccc
Confidence 4688999998 5
No 71
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.51 E-value=4 Score=30.34 Aligned_cols=48 Identities=19% Similarity=0.424 Sum_probs=32.4
Q ss_pred CCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhcc
Q 011753 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (478)
Q Consensus 220 ~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (478)
...|..|...|..- .. -.||++||..|...... .....|..|...+..
T Consensus 15 ~~~C~IC~~~~~~p-~~----~~CgH~fC~~Ci~~~~~--------~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 15 KYKCEKCHLVLCSP-KQ----TECGHRFCESCMAALLS--------SSSPKCTACQESIVK 62 (66)
T ss_dssp CEECTTTCCEESSC-CC----CSSSCCCCHHHHHHHHT--------TSSCCCTTTCCCCCT
T ss_pred CCCCCCCChHhcCe-eE----CCCCCHHHHHHHHHHHH--------hCcCCCCCCCcCCCh
Confidence 46799999877532 11 48999999999865421 234568888776543
No 72
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=33.30 E-value=11 Score=30.20 Aligned_cols=46 Identities=22% Similarity=0.500 Sum_probs=31.4
Q ss_pred CcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhc
Q 011753 221 SACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (478)
Q Consensus 221 ~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (478)
..|.+|...|.- ......||+.||..|...... ....|-.|...+.
T Consensus 23 ~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~---------~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 23 LRCGICFEYFNI----AMIIPQCSHNYCSLCIRKFLS---------YKTQCPTCCVTVT 68 (99)
T ss_dssp TBCTTTCSBCSS----EEECTTTCCEEEHHHHHHHHT---------TCCBCTTTCCBCC
T ss_pred CCcccCChhhCC----cCEECCCCCHhhHHHHHHHHH---------CCCCCCCCCCcCC
Confidence 479999987763 222347999999999865422 1257888887654
No 73
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=32.93 E-value=6.8 Score=32.29 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=35.1
Q ss_pred CCcCCCCCccCcccc-------------cccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhc
Q 011753 220 ASACMLCGVRFHPIM-------------CSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (478)
Q Consensus 220 ~~~C~~C~~~F~~l~-------------~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (478)
...|.+|...|..-. ...-..-.||++||..|....+... .......|-.|...+.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~----~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNG----NKDGSLQCPSCKTIYG 93 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHT----CCSSCCBCTTTCCBSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcc----cCCCCCcCCCCCCccC
Confidence 358999999885310 0011135699999999987654221 1134568888876554
No 74
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=32.92 E-value=11 Score=30.92 Aligned_cols=48 Identities=25% Similarity=0.526 Sum_probs=33.0
Q ss_pred CCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhcc
Q 011753 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (478)
Q Consensus 220 ~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (478)
...|.+|...|.- ....-.||++||..|...... ....|-.|...+..
T Consensus 15 ~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~---------~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFID----ATTIIECLHSFCKTCIVRYLE---------TSKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCSS----EEEETTTCCEEEHHHHHHHHT---------SCSBCTTTCCBSCS
T ss_pred cCCCccCChHHhC----cCEeCCCCChhhHHHHHHHHH---------hCCcCcCCCccccc
Confidence 3579999887652 233348999999999764421 12678888877654
No 75
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.52 E-value=17 Score=29.54 Aligned_cols=29 Identities=28% Similarity=0.787 Sum_probs=20.7
Q ss_pred CCcCCCCCccCccccccc----ccccCCCceEcCCC
Q 011753 220 ASACMLCGVRFHPIMCSR----HHCRFCGGIFCGEC 251 (478)
Q Consensus 220 ~~~C~~C~~~F~~l~~Rr----HHCR~CG~v~C~~C 251 (478)
...|+.|++. . + +|. -||+.||+.|=..-
T Consensus 35 ky~CpfCGk~-~-v-kR~a~GIW~C~kCg~~~AGGA 67 (83)
T 3j21_i 35 KHTCPVCGRK-A-V-KRISTGIWQCQKCGATFAGGA 67 (83)
T ss_dssp CBCCSSSCSS-C-E-EEEETTEEEETTTCCEEECCS
T ss_pred ccCCCCCCCc-e-e-EecCcCeEEcCCCCCEEeCCc
Confidence 4579999985 3 3 453 48999999886543
No 76
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.78 E-value=14 Score=29.22 Aligned_cols=12 Identities=25% Similarity=0.575 Sum_probs=8.9
Q ss_pred CCcCCCCCccCc
Q 011753 220 ASACMLCGVRFH 231 (478)
Q Consensus 220 ~~~C~~C~~~F~ 231 (478)
.-.|..|++.|.
T Consensus 24 ~~~C~~C~k~f~ 35 (98)
T 2gqj_A 24 EAVCPTCNVVTR 35 (98)
T ss_dssp CCCCTTTCCCCS
T ss_pred CcCCCCCCCChh
Confidence 346888888886
No 77
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=31.56 E-value=21 Score=29.54 Aligned_cols=29 Identities=24% Similarity=0.612 Sum_probs=20.7
Q ss_pred CCcCCCCCccCccccccc----ccccCCCceEcCCC
Q 011753 220 ASACMLCGVRFHPIMCSR----HHCRFCGGIFCGEC 251 (478)
Q Consensus 220 ~~~C~~C~~~F~~l~~Rr----HHCR~CG~v~C~~C 251 (478)
...|+.|++. . + +|. -||+.||+.|-..-
T Consensus 36 ky~CpfCgk~-~-v-kR~a~GIW~C~~Cg~~~AGGA 68 (92)
T 3iz5_m 36 KYFCEFCGKF-A-V-KRKAVGIWGCKDCGKVKAGGA 68 (92)
T ss_dssp CBCCTTTCSS-C-B-EEEETTEEECSSSCCEEECCS
T ss_pred cccCcccCCC-e-e-EecCcceEEcCCCCCEEeCCc
Confidence 3579999985 3 3 453 48999999886643
No 78
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=31.47 E-value=15 Score=29.83 Aligned_cols=48 Identities=19% Similarity=0.351 Sum_probs=31.1
Q ss_pred CcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhc
Q 011753 221 SACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (478)
Q Consensus 221 ~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (478)
..|.+|...|.-- . --.||++||..|....... ......|-.|...+.
T Consensus 22 ~~C~IC~~~~~~p----~-~~~CgH~fC~~Ci~~~~~~------~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 22 LECPICLELIKEP----V-STKCDHIFCKFCMLKLLNQ------KKGPSQCPLCKNDIT 69 (112)
T ss_dssp TSCSSSCCCCSSC----C-BCTTSCCCCSHHHHHHHHS------SSSSCCCTTTSCCCC
T ss_pred CCCcccChhhcCe----E-ECCCCCHHHHHHHHHHHHh------CCCCCCCcCCCCcCC
Confidence 3699998877531 1 1379999999998654321 112357888876543
No 79
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=31.10 E-value=12 Score=31.40 Aligned_cols=47 Identities=17% Similarity=0.365 Sum_probs=32.3
Q ss_pred CcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhcc
Q 011753 221 SACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (478)
Q Consensus 221 ~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (478)
..|.+|...|.-- .. -.||+.||..|...... ...+.|..|...+..
T Consensus 53 ~~C~IC~~~~~~p-~~----~~CgH~fC~~Ci~~~~~--------~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVFRP-IT----TVCQHNVCKDCLDRSFR--------AQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCSSE-EE----CTTSCEEEHHHHHHHHH--------TTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHcCc-EE----eeCCCcccHHHHHHHHh--------HCcCCCCCCCccCCC
Confidence 4799999877632 11 27999999999865432 134578888876643
No 80
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=31.10 E-value=10 Score=28.11 Aligned_cols=52 Identities=19% Similarity=0.542 Sum_probs=34.2
Q ss_pred CCCcCCCCCccCcccc--cccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhc
Q 011753 219 SASACMLCGVRFHPIM--CSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (478)
Q Consensus 219 ~~~~C~~C~~~F~~l~--~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (478)
+...|.+|...|..-. .+......||.+||..|......- ...|-.|...+.
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCPTCRKKIN 62 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH---------CSBCTTTCCBCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc---------CCCCCCCCCccC
Confidence 3568999999876310 122245689999999998654321 247888876654
No 81
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=30.97 E-value=15 Score=29.71 Aligned_cols=31 Identities=26% Similarity=0.536 Sum_probs=21.0
Q ss_pred CCcCCCCCccC--cccccccccccCCCceEcCCC
Q 011753 220 ASACMLCGVRF--HPIMCSRHHCRFCGGIFCGEC 251 (478)
Q Consensus 220 ~~~C~~C~~~F--~~l~~RrHHCR~CG~v~C~~C 251 (478)
...|+.|+..- .. .....+|+.||..|-..-
T Consensus 27 ~y~Cp~CG~~~v~r~-atGiW~C~~Cg~~~agga 59 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQ-GTGIWQCSYCDYKFTGGS 59 (83)
T ss_dssp CEECSSSCCEEEEEE-ETTEEEETTTCCEEECCS
T ss_pred cCcCCCCCCcceecc-CCCeEECCCCCCEecCCE
Confidence 35799999832 21 134688999999887654
No 82
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.86 E-value=16 Score=27.47 Aligned_cols=50 Identities=20% Similarity=0.438 Sum_probs=33.0
Q ss_pred CCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhcc
Q 011753 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (478)
Q Consensus 220 ~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (478)
...|.+|...|..- ....--.||++||..|....... .+.|-.|...+..
T Consensus 15 ~~~C~IC~~~~~~~--~~~~~~~C~H~f~~~Ci~~~~~~---------~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 15 HELCAVCLEDFKPR--DELGICPCKHAFHRKCLIKWLEV---------RKVCPLCNMPVLQ 64 (74)
T ss_dssp SCBCSSSCCBCCSS--SCEEEETTTEEEEHHHHHHHHHH---------CSBCTTTCCBCSS
T ss_pred CCCCcCCCcccCCC--CcEEEcCCCCEecHHHHHHHHHc---------CCcCCCcCccccc
Confidence 56899999988631 11111259999999998654321 2378888776644
No 83
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=30.59 E-value=17 Score=27.34 Aligned_cols=22 Identities=27% Similarity=0.619 Sum_probs=18.0
Q ss_pred CCcCCCCCccCcccccccccccCCC
Q 011753 220 ASACMLCGVRFHPIMCSRHHCRFCG 244 (478)
Q Consensus 220 ~~~C~~C~~~F~~l~~RrHHCR~CG 244 (478)
...|..|..... .|-..||.||
T Consensus 19 k~ICrkC~ARnp---~~A~~CRKCg 40 (56)
T 2ayj_A 19 KKVCRKCGALNP---IRATKCRRCH 40 (56)
T ss_dssp CEEETTTCCEEC---TTCSSCTTTC
T ss_pred hhhhccccCcCC---cccccccCCC
Confidence 467999999877 3889999887
No 84
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=30.14 E-value=24 Score=25.06 Aligned_cols=11 Identities=18% Similarity=0.670 Sum_probs=7.8
Q ss_pred CcCCCCCccCc
Q 011753 221 SACMLCGVRFH 231 (478)
Q Consensus 221 ~~C~~C~~~F~ 231 (478)
-.|..|++.|.
T Consensus 11 ~~C~~C~k~f~ 21 (66)
T 2drp_A 11 YRCKVCSRVYT 21 (66)
T ss_dssp EECTTTCCEES
T ss_pred eECCCCcchhC
Confidence 35777888776
No 85
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.98 E-value=12 Score=27.50 Aligned_cols=52 Identities=19% Similarity=0.542 Sum_probs=33.3
Q ss_pred CCCcCCCCCccCcccc--cccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhc
Q 011753 219 SASACMLCGVRFHPIM--CSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (478)
Q Consensus 219 ~~~~C~~C~~~F~~l~--~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (478)
+...|.+|...|..-. .+.-.-..||++||..|....... ...|-.|...+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCPTCRKKIN 67 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH---------CSSCTTTCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc---------CCCCCCCCCccC
Confidence 3578999999876310 122244689999999998654321 346777765543
No 86
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=29.88 E-value=23 Score=28.79 Aligned_cols=27 Identities=22% Similarity=0.634 Sum_probs=20.3
Q ss_pred CCcCCC--CCccCcccccccccccCCCceEcCC
Q 011753 220 ASACML--CGVRFHPIMCSRHHCRFCGGIFCGE 250 (478)
Q Consensus 220 ~~~C~~--C~~~F~~l~~RrHHCR~CG~v~C~~ 250 (478)
...|.. |++. .++ ..+|+.||..||..
T Consensus 25 ~~~C~~~~Ck~~-~~l---~f~C~~C~~~FC~~ 53 (86)
T 1wfe_A 25 SYSCSFKGCTDV-ELV---AVICPYCEKNFCLR 53 (86)
T ss_dssp CEECCSTTCCCE-ESS---CEECTTTCCEECGG
T ss_pred CCCCCCcCCCCC-Ccc---ceECCCCCcccccc
Confidence 467887 9886 322 46999999999864
No 87
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=29.83 E-value=20 Score=24.07 Aligned_cols=11 Identities=45% Similarity=1.069 Sum_probs=8.3
Q ss_pred CcCCCCCccCc
Q 011753 221 SACMLCGVRFH 231 (478)
Q Consensus 221 ~~C~~C~~~F~ 231 (478)
-.|..|++.|.
T Consensus 13 ~~C~~C~k~f~ 23 (48)
T 2epr_A 13 VACEICGKIFR 23 (48)
T ss_dssp EEETTTTEEES
T ss_pred eeCCCCCcccC
Confidence 46888888886
No 88
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.54 E-value=19 Score=27.73 Aligned_cols=46 Identities=20% Similarity=0.470 Sum_probs=31.7
Q ss_pred CCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhc
Q 011753 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (478)
Q Consensus 220 ~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (478)
...|.+|...|.-- . --.||++||..|...... ....|-.|...+.
T Consensus 15 ~~~C~IC~~~~~~p----~-~~~CgH~fC~~Ci~~~~~---------~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQNP----V-VTKCRHYFCESCALEHFR---------ATPRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCCSE----E-ECTTSCEEEHHHHHHHHH---------HCSBCSSSCCBCC
T ss_pred CCCCcCCCchhcCe----e-EccCCCHhHHHHHHHHHH---------CCCcCCCcCcccc
Confidence 45799999877531 1 247999999999865432 1446888876653
No 89
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=29.16 E-value=13 Score=31.69 Aligned_cols=57 Identities=18% Similarity=0.407 Sum_probs=6.5
Q ss_pred CCcccCCCCCcCCCCCccCccccc---------ccccc----cCCCceEcCCCCCCeeeccccCCCCCceeeCccchhh
Q 011753 212 PRWLADSSASACMLCGVRFHPIMC---------SRHHC----RFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVR 277 (478)
Q Consensus 212 p~W~~d~~~~~C~~C~~~F~~l~~---------RrHHC----R~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~ 277 (478)
..|.-|...+.|.+|...|...-. ....| -.||.+|+..|....+.. ..+|..|-..
T Consensus 40 a~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~---------~~~CP~Cr~~ 109 (117)
T 4a0k_B 40 ALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---------RQVCPLDNRE 109 (117)
T ss_dssp EEEEECCCC----------------------------------------------------------------------
T ss_pred EEEeecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc---------CCcCCCCCCe
Confidence 467777778999999999863100 01122 269999999998765322 3568777654
No 90
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=28.98 E-value=24 Score=29.09 Aligned_cols=29 Identities=21% Similarity=0.600 Sum_probs=20.5
Q ss_pred CCcCCCCCccCccccccc----ccccCCCceEcCCC
Q 011753 220 ASACMLCGVRFHPIMCSR----HHCRFCGGIFCGEC 251 (478)
Q Consensus 220 ~~~C~~C~~~F~~l~~Rr----HHCR~CG~v~C~~C 251 (478)
...|+.|++. . + +|. -||+.||+.|-..-
T Consensus 36 ky~CpfCgk~-~-v-kR~a~GIW~C~~C~~~~AGGA 68 (92)
T 3izc_m 36 RYDCSFCGKK-T-V-KRGAAGIWTCSCCKKTVAGGA 68 (92)
T ss_dssp CCCCSSSCSS-C-C-EEEETTEEECTTTCCEEECCS
T ss_pred CCcCCCCCCc-e-e-eecccceEEcCCCCCEEeCCc
Confidence 4579999974 3 3 454 48999999886643
No 91
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=28.59 E-value=27 Score=28.50 Aligned_cols=31 Identities=29% Similarity=0.733 Sum_probs=22.7
Q ss_pred CcCCCCCccCcccccccccccCCCceEcCCCCCC
Q 011753 221 SACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKG 254 (478)
Q Consensus 221 ~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~ 254 (478)
..|..|.. |+. .-..-||.|+++|=..|...
T Consensus 16 ~~C~VC~~-~t~--~~l~pCRvC~RvfH~~CL~r 46 (89)
T 1wil_A 16 EMCDVCEV-WTA--ESLFPCRVCTRVFHDGCLRR 46 (89)
T ss_dssp CCCTTTCC-CCS--SCCSSCSSSSSCCCHHHHHH
T ss_pred cccCcccc-ccc--cceeccccccccccHhhccc
Confidence 57888886 442 46778999999987777653
No 92
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.41 E-value=21 Score=26.43 Aligned_cols=11 Identities=27% Similarity=0.842 Sum_probs=7.2
Q ss_pred CcCCCCCccCc
Q 011753 221 SACMLCGVRFH 231 (478)
Q Consensus 221 ~~C~~C~~~F~ 231 (478)
-.|..|++.|.
T Consensus 8 ~~C~~C~k~f~ 18 (78)
T 2d9h_A 8 LQCEICGFTCR 18 (78)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCCeeC
Confidence 35777777775
No 93
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=27.81 E-value=11 Score=27.28 Aligned_cols=51 Identities=20% Similarity=0.516 Sum_probs=33.0
Q ss_pred CCcCCCCCccCccc--ccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhc
Q 011753 220 ASACMLCGVRFHPI--MCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (478)
Q Consensus 220 ~~~C~~C~~~F~~l--~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (478)
...|.+|...|..- ..+.-....||.+||..|....... ...|-.|...+.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCPTCRKKIN 55 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH---------CSBCTTTCCBCT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc---------CCCCCCCCccCC
Confidence 45799999887631 0122245689999999998654221 346777876554
No 94
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=27.54 E-value=28 Score=25.68 Aligned_cols=11 Identities=36% Similarity=1.023 Sum_probs=7.8
Q ss_pred CcCCCCCccCc
Q 011753 221 SACMLCGVRFH 231 (478)
Q Consensus 221 ~~C~~C~~~F~ 231 (478)
-.|..|++.|.
T Consensus 16 ~~C~~C~k~f~ 26 (77)
T 2ct1_A 16 YECYICHARFT 26 (77)
T ss_dssp EECTTTCCEES
T ss_pred eECCCcCchhC
Confidence 45777777776
No 95
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.53 E-value=31 Score=24.29 Aligned_cols=31 Identities=23% Similarity=0.493 Sum_probs=22.9
Q ss_pred CCcCCCCCccCcccccccccccCCCceEcCCCCCCe
Q 011753 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGR 255 (478)
Q Consensus 220 ~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~ 255 (478)
...|.+|...|..- .. -.||++||..|....
T Consensus 15 ~~~C~IC~~~~~~p--~~---~~CgH~fC~~Ci~~~ 45 (58)
T 2ecj_A 15 EASCSVCLEYLKEP--VI---IECGHNFCKACITRW 45 (58)
T ss_dssp CCBCSSSCCBCSSC--CC---CSSCCCCCHHHHHHH
T ss_pred CCCCccCCcccCcc--Ee---CCCCCccCHHHHHHH
Confidence 46799999887632 11 369999999997644
No 96
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=27.48 E-value=16 Score=28.64 Aligned_cols=48 Identities=21% Similarity=0.534 Sum_probs=31.4
Q ss_pred CCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhh
Q 011753 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRL 278 (478)
Q Consensus 220 ~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L 278 (478)
.-.|.+|...|.- ...-..||+.||..|......- .....|-.|...+
T Consensus 13 ~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~-------~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 13 ELLCLICKDIMTD----AVVIPCCGNSYCDECIRTALLE-------SDEHTCPTCHQND 60 (92)
T ss_dssp TTEETTTTEECSS----CEECTTTCCEECHHHHHHHHHH-------CTTCCCTTTCCSS
T ss_pred CCCCCCCChhhcC----ceECCCCCCHHHHHHHHHHHHh-------cCCCcCcCCCCcC
Confidence 4679999987752 2223349999999998654321 1135788887654
No 97
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=27.46 E-value=17 Score=28.96 Aligned_cols=55 Identities=25% Similarity=0.403 Sum_probs=32.2
Q ss_pred CCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCcc--chhh
Q 011753 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDV--CCVR 277 (478)
Q Consensus 220 ~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~--C~~~ 277 (478)
...|.+|-..|.. ..-..-..||+.||..|.......-.. .+......|-. |...
T Consensus 5 ~~~C~IC~~~~~~--~~~~~l~~CgH~FC~~Cl~~~~~~~i~-~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPV--EQMTTIAQCQCIFCTLCLKQYVELLIK-EGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBG--GGEEEETTTTEEEEHHHHHHHHHHHHH-HCSCCCEECSCTTCSSC
T ss_pred CcCCcccCccccc--ccceEcCCCCCcccHHHHHHHHHHHhh-cCCcccccCccccCCCC
Confidence 4579999887652 112222369999999998765432111 11112346777 8765
No 98
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=27.24 E-value=35 Score=24.79 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=16.5
Q ss_pred CcCCCCCccCcccc---cccccccCCCc
Q 011753 221 SACMLCGVRFHPIM---CSRHHCRFCGG 245 (478)
Q Consensus 221 ~~C~~C~~~F~~l~---~RrHHCR~CG~ 245 (478)
-.|..|++.|+.-- .---+|..||.
T Consensus 4 Y~C~rCg~~fs~~el~~lP~IrCpyCGy 31 (48)
T 4ayb_P 4 YRCGKCWKTFTDEQLKVLPGVRCPYCGY 31 (48)
T ss_dssp -CCCCTTTTCCCCCSCCCSSSCCTTTCC
T ss_pred EEeeccCCCccHHHHhhCCCcccCccCc
Confidence 36999999998421 12357888875
No 99
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=27.23 E-value=23 Score=26.87 Aligned_cols=21 Identities=33% Similarity=0.727 Sum_probs=14.3
Q ss_pred CCcCCCCCccCccccccccc-ccCCCc
Q 011753 220 ASACMLCGVRFHPIMCSRHH-CRFCGG 245 (478)
Q Consensus 220 ~~~C~~C~~~F~~l~~RrHH-CR~CG~ 245 (478)
...|..|+.. .+.|| |..||.
T Consensus 30 l~~c~~cG~~-----~~pH~vc~~CG~ 51 (60)
T 2zjr_Z 30 LTECPQCHGK-----KLSHHICPNCGY 51 (60)
T ss_dssp CEECTTTCCE-----ECTTBCCTTTCB
T ss_pred ceECCCCCCE-----eCCceEcCCCCc
Confidence 4578999983 34455 888873
No 100
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=26.25 E-value=90 Score=24.41 Aligned_cols=35 Identities=31% Similarity=0.717 Sum_probs=24.4
Q ss_pred CCCcCCC--CCccCccc-cccccccc-----CCCceEcCCCCC
Q 011753 219 SASACML--CGVRFHPI-MCSRHHCR-----FCGGIFCGECSK 253 (478)
Q Consensus 219 ~~~~C~~--C~~~F~~l-~~RrHHCR-----~CG~v~C~~CS~ 253 (478)
...-|+. |+.....- ..++-.|. .||..||..|..
T Consensus 24 ~~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~ 66 (80)
T 2jmo_A 24 GGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKE 66 (80)
T ss_dssp SSCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTE
T ss_pred CcEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCc
Confidence 3566765 77654321 14667897 899999999974
No 101
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=26.23 E-value=26 Score=29.24 Aligned_cols=56 Identities=18% Similarity=0.399 Sum_probs=33.0
Q ss_pred CcCCCCCccCcccccccccccCCCce-----EcCCCCCCeeeccccCCCCCceeeCccchhhhcc
Q 011753 221 SACMLCGVRFHPIMCSRHHCRFCGGI-----FCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (478)
Q Consensus 221 ~~C~~C~~~F~~l~~RrHHCR~CG~v-----~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (478)
..|+.|+.+...- ...+||..|.+- +|..|-..-..|- .- .-.---|+.|...+++
T Consensus 33 ~~CP~Cq~eL~~~-g~~~hC~~C~~~f~~~a~CPdC~q~LevLk--AC-GAvdYFC~~chgLiSK 93 (101)
T 2jne_A 33 LHCPQCQHVLDQD-NGHARCRSCGEFIEMKALCPDCHQPLQVLK--AC-GAVDYFCQHGHGLISK 93 (101)
T ss_dssp CBCSSSCSBEEEE-TTEEEETTTCCEEEEEEECTTTCSBCEEEE--ET-TEEEEEETTTTEEECT
T ss_pred ccCccCCCcceec-CCEEECccccchhhccccCcchhhHHHHHH--Hh-cCcchhhccCCceeec
Confidence 6899999988753 466778888874 5666654322221 00 1123456666665544
No 102
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=26.15 E-value=24 Score=31.28 Aligned_cols=24 Identities=29% Similarity=0.747 Sum_probs=14.9
Q ss_pred CcCCCCCccCcccccccccccCCCc
Q 011753 221 SACMLCGVRFHPIMCSRHHCRFCGG 245 (478)
Q Consensus 221 ~~C~~C~~~F~~l~~RrHHCR~CG~ 245 (478)
-.|..|++.|... .....|..||.
T Consensus 133 y~C~~Cg~~~~~~-~~~~~Cp~CG~ 156 (165)
T 2lcq_A 133 YVCIGCGRKFSTL-PPGGVCPDCGS 156 (165)
T ss_dssp EEESSSCCEESSC-CGGGBCTTTCC
T ss_pred EECCCCCCcccCC-CCCCcCCCCCC
Confidence 4688888877743 23345666665
No 103
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=25.15 E-value=39 Score=25.69 Aligned_cols=29 Identities=21% Similarity=0.467 Sum_probs=18.3
Q ss_pred CCcCCCCCccCcccc-----------cccccccCCCceEc
Q 011753 220 ASACMLCGVRFHPIM-----------CSRHHCRFCGGIFC 248 (478)
Q Consensus 220 ~~~C~~C~~~F~~l~-----------~RrHHCR~CG~v~C 248 (478)
.-.|..|++.|.... .+.+.|..||+.|-
T Consensus 8 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 47 (96)
T 2dmd_A 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAA 47 (96)
T ss_dssp CCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEES
T ss_pred CeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccC
Confidence 357999999997321 13345777776663
No 104
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=25.08 E-value=29 Score=29.31 Aligned_cols=23 Identities=30% Similarity=0.697 Sum_probs=12.5
Q ss_pred CcCCCCCccC-cccccccccccCCC
Q 011753 221 SACMLCGVRF-HPIMCSRHHCRFCG 244 (478)
Q Consensus 221 ~~C~~C~~~F-~~l~~RrHHCR~CG 244 (478)
..|..|+-.| ..+ .+...|..|+
T Consensus 68 ~~C~~CG~~F~~~~-~kPsrCP~Ck 91 (105)
T 2gmg_A 68 AQCRKCGFVFKAEI-NIPSRCPKCK 91 (105)
T ss_dssp CBBTTTCCBCCCCS-SCCSSCSSSC
T ss_pred cChhhCcCeecccC-CCCCCCcCCC
Confidence 4577788777 222 3444455443
No 105
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=24.73 E-value=38 Score=33.78 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=18.1
Q ss_pred cccCCCCcccCCC-CCcCCCCCccC-cccc---cccccccCCCceE
Q 011753 207 LDAEPPRWLADSS-ASACMLCGVRF-HPIM---CSRHHCRFCGGIF 247 (478)
Q Consensus 207 ~~~~~p~W~~d~~-~~~C~~C~~~F-~~l~---~RrHHCR~CG~v~ 247 (478)
.+.....|.||-. ...|+.|+..= .++. ..---|..||.|+
T Consensus 7 ~~~~~~~~~~~~~~~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl 52 (345)
T 3k7a_M 7 IDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVL 52 (345)
T ss_dssp ----------CCCCCCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCC
T ss_pred HHhcccccCccccCCCcCcCCCCCCCceEEECCCCCEecCCCCeEc
Confidence 3333344777765 56799998741 1111 2234577777765
No 106
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.07 E-value=32 Score=25.31 Aligned_cols=24 Identities=29% Similarity=0.675 Sum_probs=16.6
Q ss_pred CCcCCCCCccCcccccccccccCCCce
Q 011753 220 ASACMLCGVRFHPIMCSRHHCRFCGGI 246 (478)
Q Consensus 220 ~~~C~~C~~~F~~l~~RrHHCR~CG~v 246 (478)
...|+.|+..-. .+--+||.||..
T Consensus 14 k~iCpkC~a~~~---~gaw~CrKCG~~ 37 (51)
T 3j21_g 14 KYVCLRCGATNP---WGAKKCRKCGYK 37 (51)
T ss_dssp EEECTTTCCEEC---TTCSSCSSSSSC
T ss_pred CccCCCCCCcCC---CCceecCCCCCc
Confidence 356888888622 477788888764
No 107
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=24.00 E-value=22 Score=27.04 Aligned_cols=52 Identities=21% Similarity=0.356 Sum_probs=34.1
Q ss_pred CCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhc
Q 011753 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (478)
Q Consensus 220 ~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (478)
...|.+|...|..- .. -.||++||..|......... .......|-.|...+.
T Consensus 19 ~~~C~IC~~~~~~p----~~-~~CgH~fC~~Ci~~~~~~~~---~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 19 EVTCPICLELLKEP----VS-ADCNHSFCRACITLNYESNR---NTDGKGNCPVCRVPYP 70 (85)
T ss_dssp TTSCTTTCSCCSSC----EE-CTTSCCBCHHHHHHHHHHSB---CTTSCBCCTTTCCCCC
T ss_pred CCCCcCCChhhCcc----ee-CCCCCHHHHHHHHHHHHhcc---CCCCCCCCCCCCCcCC
Confidence 46799999877632 12 35999999999865432211 1223678888887664
No 108
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=23.99 E-value=23 Score=26.81 Aligned_cols=47 Identities=9% Similarity=-0.034 Sum_probs=31.5
Q ss_pred CCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhc
Q 011753 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (478)
Q Consensus 220 ~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (478)
.-.|.+|...|.-- . --.||++||..|...... .....|-.|...+.
T Consensus 8 ~~~C~IC~~~~~~P----v-~~~CgH~fc~~Ci~~~~~--------~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 8 YFRCPISLELMKDP----V-IVSTGQTYERSSIQKWLD--------AGHKTCPKSQETLL 54 (78)
T ss_dssp SSSCTTTSCCCSSE----E-EETTTEEEEHHHHHHHHT--------TTCCBCTTTCCBCS
T ss_pred cCCCCCccccccCC----E-EcCCCCeecHHHHHHHHH--------HCcCCCCCCcCCCC
Confidence 45799999877531 1 126999999999765431 12467888876553
No 109
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=23.95 E-value=35 Score=33.95 Aligned_cols=60 Identities=20% Similarity=0.429 Sum_probs=37.8
Q ss_pred CCcCCCCCccCc--cc-------ccccccccCCCc------eEcCCCCCCe-eeccccCCC------CC--ceeeCccch
Q 011753 220 ASACMLCGVRFH--PI-------MCSRHHCRFCGG------IFCGECSKGR-SLLPVKFRV------SD--PQRVCDVCC 275 (478)
Q Consensus 220 ~~~C~~C~~~F~--~l-------~~RrHHCR~CG~------v~C~~CS~~~-~~lP~~~~~------~~--pvRVC~~C~ 275 (478)
...|+.|+..=. .+ ..|..||-.||. +-|..|-+.+ +.+- .+.. .. .+-+|+.|.
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~~~l~y~-~~e~~~~~~~~~~~r~e~C~~C~ 260 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEESKHLAYL-SLEHDGQPAEKAVLRAETCPSCQ 260 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCCSCCEEE-CCCC-CCCSTTCSEEEEEETTTT
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCCCCeeEE-EecCccccCCCcceEEEEccccc
Confidence 478999997432 11 236789999985 5788887643 1110 1121 12 456899999
Q ss_pred hhhcc
Q 011753 276 VRLQS 280 (478)
Q Consensus 276 ~~L~~ 280 (478)
..+.-
T Consensus 261 ~YlK~ 265 (309)
T 2fiy_A 261 GYLKQ 265 (309)
T ss_dssp EEEEE
T ss_pred chHhh
Confidence 87754
No 110
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=23.80 E-value=30 Score=19.64 Aligned_cols=12 Identities=17% Similarity=0.443 Sum_probs=7.6
Q ss_pred ccccccCCCceE
Q 011753 236 SRHHCRFCGGIF 247 (478)
Q Consensus 236 RrHHCR~CG~v~ 247 (478)
+.+.|..||+.|
T Consensus 2 k~~~C~~C~k~f 13 (27)
T 2kvh_A 2 KPFSCSLCPQRS 13 (27)
T ss_dssp CCEECSSSSCEE
T ss_pred cCccCCCcChhh
Confidence 345677777665
No 111
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=23.63 E-value=16 Score=29.02 Aligned_cols=50 Identities=16% Similarity=0.295 Sum_probs=33.0
Q ss_pred CCCcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhc
Q 011753 219 SASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (478)
Q Consensus 219 ~~~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (478)
....|.+|...|.. ......-.||.+||..|...... ....|-.|...+.
T Consensus 39 ~~~~C~IC~~~~~~--~~~~~~l~C~H~Fh~~Ci~~wl~---------~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 39 QEMCCPICCSEYVK--GDVATELPCHHYFHKPCVSIWLQ---------KSGTCPVCRCMFP 88 (91)
T ss_dssp SCSEETTTTEECCT--TCEEEEETTTEEEEHHHHHHHHT---------TTCBCTTTCCBSS
T ss_pred CCCCCcccChhhcC--CCcEEecCCCChHHHHHHHHHHH---------cCCcCcCcCccCC
Confidence 35679999998864 12222235999999999765431 1247888876553
No 112
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.30 E-value=30 Score=19.49 Aligned_cols=10 Identities=40% Similarity=1.082 Sum_probs=4.9
Q ss_pred ccccCCCceE
Q 011753 238 HHCRFCGGIF 247 (478)
Q Consensus 238 HHCR~CG~v~ 247 (478)
+.|..||+.|
T Consensus 3 ~~C~~C~~~f 12 (29)
T 2m0e_A 3 HKCPHCDKKF 12 (29)
T ss_dssp CCCSSCCCCC
T ss_pred CcCCCCCccc
Confidence 3455555544
No 113
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=23.12 E-value=20 Score=24.08 Aligned_cols=11 Identities=45% Similarity=1.165 Sum_probs=8.3
Q ss_pred ccccccCCCce
Q 011753 236 SRHHCRFCGGI 246 (478)
Q Consensus 236 RrHHCR~CG~v 246 (478)
-+.|||.|-+-
T Consensus 8 ikqhcrfckkk 18 (37)
T 2elu_A 8 IKQHCRFCKKK 18 (37)
T ss_dssp CCCEETTTTEE
T ss_pred HHHHHHHHHHH
Confidence 47899998654
No 114
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=23.06 E-value=11 Score=38.86 Aligned_cols=48 Identities=17% Similarity=0.499 Sum_probs=33.5
Q ss_pred CcCCCCCccCcccccccccccCCCceEcCCCCCCeeeccccCCCCCceeeCccchhhhccc
Q 011753 221 SACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQSV 281 (478)
Q Consensus 221 ~~C~~C~~~F~~l~~RrHHCR~CG~v~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~~ 281 (478)
..|..|-..|.. --.-.||++||..|...... ...+.|..|...+...
T Consensus 333 ~~C~ICle~~~~-----pv~lpCGH~FC~~Ci~~wl~--------~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 333 QLCKICAENDKD-----VKIEPCGHLMCTSCLTSWQE--------SEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SBCTTTSSSBCC-----EEEETTCCEECHHHHHHHHH--------HTCSBCTTTCCBCCEE
T ss_pred CCCCccCcCCCC-----eEEeCCCChhhHHHHHHHHh--------cCCCCCCCCCCccCCc
Confidence 589999876642 23468999999999854321 0346798998777653
No 115
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=22.56 E-value=29 Score=19.74 Aligned_cols=10 Identities=30% Similarity=0.849 Sum_probs=6.0
Q ss_pred ccccCCCceE
Q 011753 238 HHCRFCGGIF 247 (478)
Q Consensus 238 HHCR~CG~v~ 247 (478)
+.|..||+.|
T Consensus 3 ~~C~~C~~~f 12 (29)
T 1ard_A 3 FVCEVCTRAF 12 (29)
T ss_dssp CBCTTTCCBC
T ss_pred eECCCCCccc
Confidence 4566666654
No 116
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=22.56 E-value=32 Score=27.19 Aligned_cols=28 Identities=25% Similarity=0.622 Sum_probs=19.6
Q ss_pred CCcCCCCCccCccccccc----ccccCCCceEcCC
Q 011753 220 ASACMLCGVRFHPIMCSR----HHCRFCGGIFCGE 250 (478)
Q Consensus 220 ~~~C~~C~~~F~~l~~Rr----HHCR~CG~v~C~~ 250 (478)
...|+.|++. . + +|. -+|+.||+.|=..
T Consensus 27 ky~C~fCgk~-~-v-kR~a~GIW~C~~C~~~~AGG 58 (73)
T 1ffk_W 27 KYKCPVCGFP-K-L-KRASTSIWVCGHCGYKIAGG 58 (73)
T ss_pred CccCCCCCCc-e-e-EEEEeEEEECCCCCcEEECC
Confidence 5689999873 3 2 343 6799999887554
No 117
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=22.35 E-value=34 Score=19.44 Aligned_cols=13 Identities=31% Similarity=0.759 Sum_probs=8.3
Q ss_pred ccccccCCCceEc
Q 011753 236 SRHHCRFCGGIFC 248 (478)
Q Consensus 236 RrHHCR~CG~v~C 248 (478)
+.+.|..||+.|-
T Consensus 2 k~~~C~~C~k~f~ 14 (28)
T 2kvf_A 2 RPYSCSVCGKRFS 14 (28)
T ss_dssp CSEECSSSCCEES
T ss_pred cCccCCCCCcccC
Confidence 4456777777663
No 118
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=21.77 E-value=29 Score=28.29 Aligned_cols=11 Identities=36% Similarity=0.757 Sum_probs=8.6
Q ss_pred CcCCCCCccCc
Q 011753 221 SACMLCGVRFH 231 (478)
Q Consensus 221 ~~C~~C~~~F~ 231 (478)
-.|..|++.|.
T Consensus 75 ~~C~~C~k~f~ 85 (129)
T 2wbt_A 75 FVCPLCLMPFS 85 (129)
T ss_dssp EECTTTCCEES
T ss_pred eECCCCCcccC
Confidence 46888888886
No 119
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.74 E-value=34 Score=19.45 Aligned_cols=13 Identities=31% Similarity=0.945 Sum_probs=8.5
Q ss_pred ccccccCCCceEc
Q 011753 236 SRHHCRFCGGIFC 248 (478)
Q Consensus 236 RrHHCR~CG~v~C 248 (478)
+.+.|..||+.|-
T Consensus 2 k~~~C~~C~~~f~ 14 (30)
T 2m0d_A 2 KPYQCDYCGRSFS 14 (30)
T ss_dssp CCEECTTTCCEES
T ss_pred cCccCCCCCcccC
Confidence 3456777777664
No 120
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=21.11 E-value=26 Score=29.46 Aligned_cols=29 Identities=24% Similarity=0.618 Sum_probs=19.7
Q ss_pred CCcCCCCCccCccccccc----ccccCCCceEcCCC
Q 011753 220 ASACMLCGVRFHPIMCSR----HHCRFCGGIFCGEC 251 (478)
Q Consensus 220 ~~~C~~C~~~F~~l~~Rr----HHCR~CG~v~C~~C 251 (478)
...|+.|++. . + +|. -||+.||+.|-+.-
T Consensus 36 ky~CpfCgk~-~-v-KR~a~GIW~C~kCg~~~AGGA 68 (103)
T 4a17_Y 36 KYGCPFCGKV-A-V-KRAAVGIWKCKPCKKIIAGGA 68 (103)
T ss_dssp CEECTTTCCE-E-E-EEEETTEEEETTTTEEEECCS
T ss_pred CCCCCCCCCc-e-e-eecCcceEEcCCCCCEEeCCc
Confidence 4579999874 3 3 443 48888888886643
No 121
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=20.95 E-value=48 Score=26.12 Aligned_cols=45 Identities=2% Similarity=-0.051 Sum_probs=34.2
Q ss_pred CCCCCCCCCcccccccccCCCcccccceeeccc-CcccCCCCCccc
Q 011753 24 IPSSPPDDMGLENSRASCNSMSAVEFESQRMVG-SKEYDTELPTQF 68 (478)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 68 (478)
+....|.+......+..|.+...+-.---.||. |..||...+..+
T Consensus 8 ~~~~~W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 8 LKGHAWLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp -------CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred cCCCccccCccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 455689999999999999999888888889999 999999888765
No 122
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=20.55 E-value=41 Score=33.89 Aligned_cols=44 Identities=23% Similarity=0.590 Sum_probs=31.6
Q ss_pred CCcCCCCCccCcccccccccccCCCce-EcCCCCCCeeeccccCCCCCceeeCccchhhhccc
Q 011753 220 ASACMLCGVRFHPIMCSRHHCRFCGGI-FCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQSV 281 (478)
Q Consensus 220 ~~~C~~C~~~F~~l~~RrHHCR~CG~v-~C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~~ 281 (478)
...|..|...|.-. ---.||+. ||..|.... +.|..|...+...
T Consensus 295 ~~~C~IC~~~~~~~-----v~lpCgH~~fC~~C~~~~-------------~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 295 ERTCKVCMDKEVSV-----VFIPCGHLVVCQECAPSL-------------RKCPICRGIIKGT 339 (345)
T ss_dssp TCBCTTTSSSBCCE-----EEETTCCEEECTTTGGGC-------------SBCTTTCCBCCEE
T ss_pred CCCCCccCCcCCce-----EEcCCCChhHhHHHHhcC-------------CcCCCCCCCccCe
Confidence 36799999877632 11379999 999997521 6788888777653
No 123
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=20.47 E-value=40 Score=24.63 Aligned_cols=10 Identities=60% Similarity=1.494 Sum_probs=5.9
Q ss_pred cCCCCCccCc
Q 011753 222 ACMLCGVRFH 231 (478)
Q Consensus 222 ~C~~C~~~F~ 231 (478)
.|..|++.|.
T Consensus 31 ~C~~C~~~f~ 40 (82)
T 2kmk_A 31 PCQYCGKRFH 40 (82)
T ss_dssp ECSSSCCEES
T ss_pred eCCcCChhhC
Confidence 4666666664
No 124
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=20.27 E-value=38 Score=19.28 Aligned_cols=12 Identities=25% Similarity=0.584 Sum_probs=7.6
Q ss_pred cccccCCCceEc
Q 011753 237 RHHCRFCGGIFC 248 (478)
Q Consensus 237 rHHCR~CG~v~C 248 (478)
.+.|..||+.|-
T Consensus 2 ~~~C~~C~k~f~ 13 (29)
T 1rik_A 2 KFACPECPKRFM 13 (29)
T ss_dssp CEECSSSSCEES
T ss_pred CccCCCCCchhC
Confidence 356777777664
Done!