BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011755
(478 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain
pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain In Complex With Adp
Length = 536
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/188 (42%), Positives = 103/188 (54%), Gaps = 15/188 (7%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
MNV+ V AE PWSKTGGLGDV G LP A+A GHRVMV++P Y Y + DT + +
Sbjct: 10 MNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIK 69
Query: 338 VDRQDIEVAYFQAYIDGVDFVFLDSPLFRH-----LGNNIYGGGR----EDILKRMVLFC 388
V + V +F Y GVD VF+D P F G IYG +D R L C
Sbjct: 70 VADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLC 129
Query: 389 KAAIEIPWYV-----PCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLL 443
+AA+E P + P YG+ ++VF+ NDWHT L YLK Y+ NG+ + +
Sbjct: 130 QAALEAPRILNLNNNPYFKGTYGE-DVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAF 188
Query: 444 VIHNIAHQ 451
IHNI++Q
Sbjct: 189 CIHNISYQ 196
>pdb|1RZU|A Chain A, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
pdb|1RZU|B Chain B, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
Length = 485
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 79/178 (44%), Gaps = 14/178 (7%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
MNV+ V++E P KTGGL DV GALP AL G R + P Y ++
Sbjct: 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEF 60
Query: 338 VDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGG--GRE--DILKRMVLFCKAAIE 393
D + + + +D + LD+P + Y G G++ D KR AA
Sbjct: 61 TDLLGEKADLLEVQHERLDLLILDAPAYYERSGGPYLGQTGKDYPDNWKRFAALSLAAAR 120
Query: 394 IPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQ 451
I GV G + A+DW A+ PVY++ Y + + SLL IHNIA Q
Sbjct: 121 I-----GAGVLPGWRPDMVHAHDWQAAMTPVYMR--YAETPEIP---SLLTIHNIAFQ 168
>pdb|1RZV|A Chain A, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
pdb|1RZV|B Chain B, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
Length = 485
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 75/177 (42%), Gaps = 14/177 (7%)
Query: 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRV 338
NV+ V++E P KTGGL DV GALP AL G R + P Y ++
Sbjct: 2 NVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEFT 61
Query: 339 DRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGG--GRE--DILKRMVLFCKAAIEI 394
D + + + +D + LD+P + Y G G++ D KR AA I
Sbjct: 62 DLLGEKADLLEVQHERLDLLILDAPAYYERSGGPYLGQTGKDYPDNWKRFAALSLAAARI 121
Query: 395 PWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQ 451
GV G A+DW A PVY + Y + + SLL IHNIA Q
Sbjct: 122 -----GAGVLPGWRPDXVHAHDWQAAXTPVYXR--YAETPEIP---SLLTIHNIAFQ 168
>pdb|3D1J|A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408s)
Length = 477
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 87/211 (41%), Gaps = 44/211 (20%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
M V+ V++E P KTGGL DV GALP A G V+ P + + G+
Sbjct: 1 MQVLHVSSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRR----GVTDAQV 56
Query: 338 VDRQDI---EVAYFQAYIDGVDFVFLDSP-LFRHLGN-----NIYGGGREDILKRMVLFC 388
V R+D + + +GV +D+P L+ G+ N++ D + R L
Sbjct: 57 VSRRDTFAGHITLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLF--AYTDNVLRFALLG 114
Query: 389 KAAIEI-----PWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLL 443
E+ P++ P V A+DWH L P YL A R +S+
Sbjct: 115 WVGAEMASGLDPFWRPD----------VVHAHDWHAGLAPAYLAARGRP------AKSVF 158
Query: 444 VIHNIAHQ------ICQDIT--WTFSNCMTL 466
+HN+A+Q DI W+F N L
Sbjct: 159 TVHNLAYQGMFYAHHMNDIQLPWSFFNIHGL 189
>pdb|2QZS|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsb)
pdb|2R4T|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsc)
pdb|2R4U|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsd)
pdb|3GUH|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Dgm
Length = 485
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 86/211 (40%), Gaps = 44/211 (20%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
M V+ V +E P KTGGL DV GALP A G V+ P + + G+
Sbjct: 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRR----GVTDAQV 56
Query: 338 VDRQDI---EVAYFQAYIDGVDFVFLDSP-LFRHLGN-----NIYGGGREDILKRMVLFC 388
V R+D + + +GV +D+P L+ G+ N++ D + R L
Sbjct: 57 VSRRDTFAGHITLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLF--AYTDNVLRFALLG 114
Query: 389 KAAIEI-----PWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLL 443
E+ P++ P V A+DWH L P YL A R +S+
Sbjct: 115 WVGAEMASGLDPFWRPD----------VVHAHDWHAGLAPAYLAARGRP------AKSVF 158
Query: 444 VIHNIAHQ------ICQDIT--WTFSNCMTL 466
+HN+A+Q DI W+F N L
Sbjct: 159 TVHNLAYQGMFYAHHMNDIQLPWSFFNIHGL 189
>pdb|3COP|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Acceptor Analogue Heppso
pdb|3CX4|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Oligosaccharides
Length = 485
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 86/211 (40%), Gaps = 44/211 (20%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
M V+ V +E P KTGGL DV GALP A G V+ P + + G+
Sbjct: 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRR----GVTDAQV 56
Query: 338 VDRQDI---EVAYFQAYIDGVDFVFLDSP-LFRHLGN-----NIYGGGREDILKRMVLFC 388
V R+D + + +GV +D+P L+ G+ N++ D + R L
Sbjct: 57 VSRRDTFAGHITLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLF--AYTDNVLRFALLG 114
Query: 389 KAAIEI-----PWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLL 443
E+ P++ P V A+DWH L P YL A R +S+
Sbjct: 115 WVGAEMASGLDPFWRPD----------VVHAHDWHAGLAPAYLAARGRP------AKSVF 158
Query: 444 VIHNIAHQ------ICQDIT--WTFSNCMTL 466
+HN+A+Q DI W+F N L
Sbjct: 159 TVHNLAYQGMFYAHHMNDIQLPWSFFNIHGL 189
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
Length = 440
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 25/161 (15%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
M V+L+ E P K GGL + A+ +ALA GH V+V P +G + + ++ G + R
Sbjct: 4 MKVLLLGFEFLP-VKVGGLAEALTAISEALASLGHEVLVFTPSHGRF-QGEEIG-KIRVF 60
Query: 338 VDRQDIEVAYFQ---AYIDGVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAI-- 392
+ ++V+Y + I + LDS ++YG G + ++++ V F +A++
Sbjct: 61 GEEVQVKVSYEERGNLRIYRIGGGLLDS-------EDVYGPGWDGLIRKAVTFGRASVLL 113
Query: 393 --EIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYR 431
++ P V + +DWHT +K Y++
Sbjct: 114 LNDLLREEPLPDVVH--------FHDWHTVFAGALIKKYFK 146
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
Length = 428
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 25/161 (15%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
M V+L+ E P K GGL + A+ +ALA GH V+V P +G + + ++ G + R
Sbjct: 3 MKVLLLGFEFLP-VKVGGLAEALTAISEALASLGHEVLVFTPSHGRF-QGEEIG-KIRVF 59
Query: 338 VDRQDIEVAYFQ---AYIDGVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAI-- 392
+ ++V+Y + I + LDS ++YG G + ++++ V F +A++
Sbjct: 60 GEEVQVKVSYEERGNLRIYRIGGGLLDS-------EDVYGPGWDGLIRKAVTFGRASVLL 112
Query: 393 --EIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYR 431
++ P V + +DWHT +K Y++
Sbjct: 113 LNDLLREEPLPDVVH--------FHDWHTVFAGALIKKYFK 145
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
Length = 439
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 25/161 (15%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
M V+L+ E P K GGL + A+ +ALA GH V+V P +G + + ++ G + R
Sbjct: 3 MKVLLLGFEFLP-VKVGGLAEALTAISEALASLGHEVLVFTPSHGRF-QGEEIG-KIRVF 59
Query: 338 VDRQDIEVAYFQ---AYIDGVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAI-- 392
+ ++V+Y + I + LDS ++YG G + ++++ V F +A++
Sbjct: 60 GEEVQVKVSYEERGNLRIYRIGGGLLDS-------EDVYGPGWDGLIRKAVTFGRASVLL 112
Query: 393 --EIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYR 431
++ P V + +DWHT +K Y++
Sbjct: 113 LNDLLREEPLPDVVH--------FHDWHTVFAGALIKKYFK 145
>pdb|3D1L|A Chain A, Crystal Structure Of Putative Nadp Oxidoreductase Bf3122
From Bacteroides Fragilis
pdb|3D1L|B Chain B, Crystal Structure Of Putative Nadp Oxidoreductase Bf3122
From Bacteroides Fragilis
Length = 266
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 46/116 (39%), Gaps = 16/116 (13%)
Query: 295 GLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDG 354
G G++A L KAL R+G R++ V A + Y D ++ Y + YI
Sbjct: 17 GAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVN-PYAKLYI-- 73
Query: 355 VDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIP---W--YVPCGGVCY 405
V L F L I G RE+ L A IP W +VP GV Y
Sbjct: 74 ---VSLKDSAFAELLQGIVEGKREE-----ALXVHTAGSIPXNVWEGHVPHYGVFY 121
>pdb|4GI5|A Chain A, Crystal Structure Of A Putative Quinone Reductase From
Klebsiella Pneumoniae (Target Psi-013613)
pdb|4GI5|B Chain B, Crystal Structure Of A Putative Quinone Reductase From
Klebsiella Pneumoniae (Target Psi-013613)
Length = 280
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 47 LNNSVSGFSFRS-NKSGHLLKVKHVKAT--GAGFVEDESGNEPEDSLQATIEKSKKVLAM 103
LN ++ F+ R ++GH ++V + A AG+ D+SG P SK+ A
Sbjct: 37 LNGALKNFAIRHLQQAGHEVQVSDLYAXRWKAGYDADDSGAPPVGEFWRPTLDSKQAFAQ 96
Query: 104 QKQLLQQISERRKLV 118
Q ++E+ KL+
Sbjct: 97 GTQSADIVAEQEKLL 111
>pdb|3H09|A Chain A, The Structure Of Haemophilus Influenzae Iga1 Protease
pdb|3H09|B Chain B, The Structure Of Haemophilus Influenzae Iga1 Protease
Length = 989
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Query: 197 NRLSPE--KESIDIDSSKLLKGTDTQSTWSDELPSFLSRTAVISSPKEERHEKDLDQVQQ 254
N PE K +D D++ L G++TQ W+ P+ +T+VIS+ E + D Q
Sbjct: 298 NIYKPEFAKTVLDKDTAGSLTGSNTQYNWN---PT--GKTSVISNGSESLNVDLFDSSQD 352
Query: 255 IDSEPIEPKTEEAKPPPLAGANVM 278
DS+ K K L G+ +
Sbjct: 353 TDSK----KNNHGKSVTLRGSGTL 372
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,234,997
Number of Sequences: 62578
Number of extensions: 562136
Number of successful extensions: 1271
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1247
Number of HSP's gapped (non-prelim): 22
length of query: 478
length of database: 14,973,337
effective HSP length: 103
effective length of query: 375
effective length of database: 8,527,803
effective search space: 3197926125
effective search space used: 3197926125
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)