Query 011755
Match_columns 478
No_of_seqs 169 out of 1140
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 04:52:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011755.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011755hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08323 Glyco_transf_5: Starc 100.0 4.1E-47 8.9E-52 367.4 14.4 179 279-468 1-191 (245)
2 PRK14098 glycogen synthase; Pr 100.0 6.3E-43 1.4E-47 367.9 18.3 177 274-458 2-191 (489)
3 PLN02939 transferase, transfer 100.0 1.4E-42 3E-47 386.9 20.0 174 275-459 479-660 (977)
4 PRK14099 glycogen synthase; Pr 100.0 2.3E-42 5E-47 363.4 19.0 170 276-457 2-177 (485)
5 TIGR02095 glgA glycogen/starch 100.0 6.4E-39 1.4E-43 331.6 18.0 170 278-458 1-174 (473)
6 PLN02316 synthase/transferase 100.0 2.2E-36 4.8E-41 340.9 20.3 170 272-454 582-754 (1036)
7 PRK00654 glgA glycogen synthas 100.0 3.3E-36 7.2E-41 312.5 17.8 163 278-457 1-165 (466)
8 COG0297 GlgA Glycogen synthase 100.0 3.9E-36 8.6E-41 318.1 15.8 168 278-455 1-174 (487)
9 cd03791 GT1_Glycogen_synthase_ 100.0 3.7E-35 8E-40 301.0 18.4 171 279-458 1-178 (476)
10 TIGR02094 more_P_ylases alpha- 99.8 7.9E-20 1.7E-24 198.6 13.3 172 280-459 1-221 (601)
11 cd04299 GT1_Glycogen_Phosphory 99.8 5E-18 1.1E-22 189.0 13.5 170 279-459 87-309 (778)
12 TIGR03449 mycothiol_MshA UDP-N 99.0 5.1E-09 1.1E-13 105.2 12.3 129 280-449 1-135 (405)
13 PF13579 Glyco_trans_4_4: Glyc 98.9 1.5E-08 3.3E-13 86.2 10.5 106 294-450 1-108 (160)
14 TIGR02472 sucr_P_syn_N sucrose 98.9 2.9E-08 6.2E-13 103.1 14.1 124 291-449 23-148 (439)
15 TIGR02468 sucrsPsyn_pln sucros 98.8 5E-08 1.1E-12 112.4 13.1 156 276-448 168-343 (1050)
16 PRK10307 putative glycosyl tra 98.7 2.5E-07 5.4E-12 94.1 15.1 138 278-449 1-142 (412)
17 cd03802 GT1_AviGT4_like This f 98.7 2.2E-07 4.8E-12 89.2 12.6 45 278-322 1-47 (335)
18 cd03796 GT1_PIG-A_like This fa 98.7 2.9E-07 6.2E-12 93.6 13.1 42 279-322 1-42 (398)
19 TIGR02149 glgA_Coryne glycogen 98.6 4.3E-07 9.4E-12 90.1 12.4 117 278-449 1-117 (388)
20 PLN02871 UDP-sulfoquinovose:DA 98.6 6.6E-07 1.4E-11 93.5 13.8 47 275-322 56-102 (465)
21 cd03800 GT1_Sucrose_synthase T 98.6 5.1E-07 1.1E-11 88.8 12.0 129 279-449 1-135 (398)
22 cd04962 GT1_like_5 This family 98.5 6.3E-07 1.4E-11 87.7 11.5 122 278-449 1-122 (371)
23 TIGR02470 sucr_synth sucrose s 98.5 8E-07 1.7E-11 100.3 12.3 143 278-449 256-419 (784)
24 cd03793 GT1_Glycogen_synthase_ 98.4 7.4E-07 1.6E-11 97.6 8.6 156 282-450 6-184 (590)
25 cd03794 GT1_wbuB_like This fam 98.4 7.9E-06 1.7E-10 77.4 13.5 132 279-448 1-134 (394)
26 PF13439 Glyco_transf_4: Glyco 98.3 8.5E-06 1.8E-10 70.5 11.1 103 292-449 10-112 (177)
27 PF13477 Glyco_trans_4_2: Glyc 98.3 1.1E-05 2.5E-10 69.6 11.3 109 279-449 1-110 (139)
28 cd03805 GT1_ALG2_like This fam 98.2 7E-06 1.5E-10 81.6 10.6 41 278-322 1-41 (392)
29 cd04951 GT1_WbdM_like This fam 98.2 1.3E-05 2.9E-10 77.4 11.4 118 279-453 1-118 (360)
30 cd03801 GT1_YqgM_like This fam 98.2 2.7E-05 5.9E-10 72.5 12.5 43 279-323 1-43 (374)
31 PRK00726 murG undecaprenyldiph 98.2 1.6E-05 3.6E-10 79.2 11.6 120 278-448 2-124 (357)
32 cd03825 GT1_wcfI_like This fam 98.1 9.7E-06 2.1E-10 78.5 8.5 39 278-320 1-39 (365)
33 cd03823 GT1_ExpE7_like This fa 98.1 4.3E-05 9.4E-10 72.5 11.6 44 279-323 1-44 (359)
34 cd04955 GT1_like_6 This family 98.0 8E-05 1.7E-09 72.3 13.1 42 279-321 1-42 (363)
35 cd03817 GT1_UGDG_like This fam 98.0 5E-05 1.1E-09 72.1 11.1 44 279-324 1-44 (374)
36 PLN00142 sucrose synthase 98.0 2.3E-05 5E-10 89.0 10.1 35 408-449 408-442 (815)
37 cd03807 GT1_WbnK_like This fam 98.0 5.3E-05 1.1E-09 71.5 10.2 117 279-451 1-117 (365)
38 TIGR01133 murG undecaprenyldip 97.9 8.7E-05 1.9E-09 73.0 11.6 120 278-448 1-123 (348)
39 PLN02846 digalactosyldiacylgly 97.9 4.1E-05 8.9E-10 82.2 9.9 47 275-323 2-49 (462)
40 cd01635 Glycosyltransferase_GT 97.8 0.00012 2.5E-09 65.3 9.1 37 280-318 1-37 (229)
41 cd03821 GT1_Bme6_like This fam 97.7 0.00025 5.4E-09 67.2 10.6 42 279-322 1-42 (375)
42 cd03819 GT1_WavL_like This fam 97.7 0.00017 3.7E-09 70.0 9.5 108 289-449 5-112 (355)
43 cd03809 GT1_mtfB_like This fam 97.7 0.00019 4.2E-09 68.7 9.3 45 279-324 1-45 (365)
44 cd03808 GT1_cap1E_like This fa 97.7 0.00079 1.7E-08 63.2 12.9 117 279-451 1-117 (359)
45 cd03822 GT1_ecORF704_like This 97.6 0.00034 7.4E-09 67.0 10.1 41 279-322 1-41 (366)
46 cd03818 GT1_ExpC_like This fam 97.6 0.00067 1.5E-08 69.0 12.7 117 279-446 1-117 (396)
47 cd03785 GT1_MurG MurG is an N- 97.6 0.00056 1.2E-08 67.4 11.7 118 280-448 2-122 (350)
48 cd03814 GT1_like_2 This family 97.6 0.00035 7.5E-09 66.8 9.9 42 279-322 1-42 (364)
49 cd03792 GT1_Trehalose_phosphor 97.6 0.00032 7E-09 70.4 9.9 38 279-320 1-38 (372)
50 cd03812 GT1_CapH_like This fam 97.6 0.00033 7.2E-09 68.0 9.7 40 279-322 1-40 (358)
51 cd03820 GT1_amsD_like This fam 97.5 0.001 2.2E-08 62.3 10.8 42 279-323 1-42 (348)
52 cd03795 GT1_like_4 This family 97.4 0.0015 3.2E-08 63.2 11.4 42 279-322 1-42 (357)
53 PRK09922 UDP-D-galactose:(gluc 97.4 0.00054 1.2E-08 68.9 8.4 42 278-322 1-44 (359)
54 cd03811 GT1_WabH_like This fam 97.3 0.0011 2.4E-08 61.9 9.2 41 279-323 1-41 (353)
55 cd03799 GT1_amsK_like This is 97.3 0.002 4.4E-08 62.1 11.3 39 279-322 1-39 (355)
56 PF05693 Glycogen_syn: Glycoge 97.2 0.0002 4.2E-09 79.2 3.2 155 283-449 2-178 (633)
57 PRK15484 lipopolysaccharide 1, 97.2 0.0018 3.9E-08 66.4 9.8 127 278-448 3-131 (380)
58 PRK10125 putative glycosyl tra 97.2 0.0013 2.7E-08 68.9 8.2 39 278-320 1-39 (405)
59 cd03798 GT1_wlbH_like This fam 97.1 0.0086 1.9E-07 56.3 12.2 42 280-322 1-42 (377)
60 cd03816 GT1_ALG1_like This fam 96.8 0.011 2.3E-07 61.6 11.4 39 278-322 4-42 (415)
61 cd05844 GT1_like_7 Glycosyltra 96.5 0.012 2.5E-07 57.8 9.0 36 279-321 1-36 (367)
62 PRK15427 colanic acid biosynth 96.3 0.043 9.3E-07 57.2 12.2 40 278-322 1-40 (406)
63 PRK13609 diacylglycerol glucos 95.8 0.028 6E-07 57.0 7.8 43 276-323 3-45 (380)
64 KOG1111 N-acetylglucosaminyltr 95.7 0.057 1.2E-06 57.2 9.5 122 278-448 1-124 (426)
65 TIGR03088 stp2 sugar transfera 95.4 0.084 1.8E-06 52.7 9.2 37 278-318 2-38 (374)
66 PLN02275 transferase, transfer 93.9 0.51 1.1E-05 48.3 10.9 27 293-319 14-41 (371)
67 PRK15179 Vi polysaccharide bio 93.9 0.59 1.3E-05 53.2 12.2 30 279-312 283-312 (694)
68 PF09314 DUF1972: Domain of un 93.0 2 4.3E-05 41.5 12.5 129 279-452 3-132 (185)
69 PRK00025 lpxB lipid-A-disaccha 91.4 0.56 1.2E-05 47.3 7.1 36 277-319 1-36 (380)
70 cd03788 GT1_TPS Trehalose-6-Ph 89.7 0.56 1.2E-05 50.2 5.6 46 385-447 119-164 (460)
71 cd03806 GT1_ALG11_like This fa 88.4 4.9 0.00011 42.2 11.5 36 288-323 7-45 (419)
72 PRK13608 diacylglycerol glucos 85.9 3 6.4E-05 43.3 8.1 37 276-317 4-43 (391)
73 TIGR00236 wecB UDP-N-acetylglu 85.0 2.9 6.2E-05 42.3 7.3 50 381-446 68-118 (365)
74 COG0058 GlgP Glucan phosphoryl 84.1 3.2 6.8E-05 47.9 7.8 161 286-452 108-316 (750)
75 cd03784 GT1_Gtf_like This fami 83.9 1.4 3E-05 44.9 4.5 36 278-321 1-38 (401)
76 cd03786 GT1_UDP-GlcNAc_2-Epime 80.6 4.5 9.8E-05 40.3 6.7 51 382-448 71-122 (363)
77 cd03813 GT1_like_3 This family 79.9 2 4.3E-05 45.8 4.1 41 279-320 1-41 (475)
78 PF03033 Glyco_transf_28: Glyc 79.1 3.7 8.1E-05 35.5 4.9 28 293-320 6-35 (139)
79 TIGR02400 trehalose_OtsA alpha 76.0 4.8 0.0001 43.5 5.7 55 385-461 115-169 (456)
80 PRK12446 undecaprenyldiphospho 74.4 37 0.00081 35.1 11.4 29 294-322 9-40 (352)
81 COG0707 MurG UDP-N-acetylgluco 74.1 42 0.00092 35.4 11.9 111 293-448 10-124 (357)
82 PF02951 GSH-S_N: Prokaryotic 65.0 11 0.00023 34.2 4.5 41 278-321 1-41 (119)
83 PLN02605 monogalactosyldiacylg 62.9 15 0.00033 37.8 5.8 33 280-317 1-36 (382)
84 cd04300 GT1_Glycogen_Phosphory 59.2 91 0.002 36.8 11.6 30 293-322 106-135 (797)
85 PF08288 PIGA: PIGA (GPI ancho 56.5 15 0.00033 32.1 3.8 36 408-448 50-85 (90)
86 PRK14985 maltodextrin phosphor 56.4 1E+02 0.0022 36.3 11.4 31 292-322 111-141 (798)
87 PF01975 SurE: Survival protei 55.9 17 0.00038 35.2 4.5 40 278-324 1-40 (196)
88 PF00862 Sucrose_synth: Sucros 55.8 42 0.0009 37.7 7.8 35 408-449 401-435 (550)
89 COG0380 OtsA Trehalose-6-phosp 54.9 23 0.00049 39.3 5.7 66 376-463 125-191 (486)
90 PRK06718 precorrin-2 dehydroge 54.2 18 0.00038 35.0 4.3 32 289-321 12-43 (202)
91 PRK05647 purN phosphoribosylgl 53.7 25 0.00055 34.1 5.2 130 278-470 2-136 (200)
92 KOG2130 Phosphatidylserine-spe 53.5 12 0.00025 39.8 3.0 37 98-144 321-357 (407)
93 PRK14501 putative bifunctional 52.9 23 0.00049 40.4 5.5 55 385-461 121-175 (726)
94 TIGR02093 P_ylase glycogen/sta 52.6 1.7E+02 0.0036 34.7 12.2 30 293-322 103-132 (794)
95 PHA03392 egt ecdysteroid UDP-g 52.5 12 0.00026 41.0 3.2 39 278-321 21-59 (507)
96 TIGR01007 eps_fam capsular exo 51.9 24 0.00052 33.1 4.6 34 278-317 17-52 (204)
97 TIGR00215 lpxB lipid-A-disacch 50.9 52 0.0011 34.4 7.4 34 278-318 6-39 (385)
98 PRK06249 2-dehydropantoate 2-r 50.6 25 0.00054 35.6 4.9 35 275-320 3-37 (313)
99 TIGR01915 npdG NADPH-dependent 49.5 23 0.00049 34.1 4.2 28 293-320 6-33 (219)
100 PF06564 YhjQ: YhjQ protein; 47.5 25 0.00055 35.5 4.3 34 278-317 1-36 (243)
101 PF12000 Glyco_trans_4_3: Gkyc 46.2 47 0.001 31.8 5.7 45 380-431 42-87 (171)
102 PRK10117 trehalose-6-phosphate 44.9 40 0.00086 37.2 5.6 46 385-447 111-156 (474)
103 PF00982 Glyco_transf_20: Glyc 43.2 34 0.00074 37.5 4.8 55 385-461 129-183 (474)
104 PLN03063 alpha,alpha-trehalose 42.9 47 0.001 38.7 6.1 54 385-460 135-188 (797)
105 PRK14986 glycogen phosphorylas 42.8 5.2E+02 0.011 30.9 14.3 32 291-322 121-152 (815)
106 TIGR00639 PurN phosphoribosylg 42.8 54 0.0012 31.6 5.6 131 278-471 1-136 (190)
107 COG0569 TrkA K+ transport syst 39.8 24 0.00052 34.6 2.8 28 294-321 6-33 (225)
108 PF00201 UDPGT: UDP-glucoronos 39.0 13 0.00027 39.5 0.7 28 294-321 10-37 (500)
109 PLN02205 alpha,alpha-trehalose 39.0 51 0.0011 38.9 5.6 47 385-447 188-234 (854)
110 PLN03064 alpha,alpha-trehalose 38.9 60 0.0013 38.8 6.2 46 385-447 219-264 (934)
111 PLN00198 anthocyanidin reducta 38.5 56 0.0012 32.7 5.2 27 293-319 15-41 (338)
112 TIGR01380 glut_syn glutathione 38.2 36 0.00079 34.7 3.9 41 278-321 1-41 (312)
113 PLN02695 GDP-D-mannose-3',5'-e 37.2 63 0.0014 33.5 5.4 44 265-319 10-53 (370)
114 PRK10675 UDP-galactose-4-epime 36.4 41 0.00088 33.4 3.8 26 293-318 6-31 (338)
115 PHA03003 palmytilated EEV memb 36.3 57 0.0012 34.4 5.0 46 278-323 230-279 (369)
116 CHL00194 ycf39 Ycf39; Provisio 35.7 47 0.001 33.2 4.1 28 293-320 6-33 (317)
117 TIGR02398 gluc_glyc_Psyn gluco 35.6 68 0.0015 35.5 5.6 46 385-447 120-165 (487)
118 PRK14619 NAD(P)H-dependent gly 35.5 54 0.0012 33.1 4.6 33 277-320 4-36 (308)
119 cd03804 GT1_wbaZ_like This fam 35.1 1.2E+02 0.0027 30.0 6.9 28 279-309 1-28 (351)
120 PRK00207 sulfur transfer compl 34.9 88 0.0019 28.3 5.4 40 278-320 1-41 (128)
121 PRK06522 2-dehydropantoate 2-r 34.3 54 0.0012 32.2 4.3 26 295-320 7-32 (304)
122 COG1819 Glycosyl transferases, 33.7 41 0.00089 35.9 3.5 37 277-321 1-39 (406)
123 PRK12921 2-dehydropantoate 2-r 33.0 54 0.0012 32.4 4.0 25 295-319 7-31 (305)
124 PF03358 FMN_red: NADPH-depend 32.5 99 0.0021 27.4 5.3 40 278-320 1-40 (152)
125 PRK11199 tyrA bifunctional cho 32.4 33 0.00072 36.1 2.5 28 293-320 104-131 (374)
126 PRK07417 arogenate dehydrogena 31.9 63 0.0014 32.2 4.3 26 295-320 7-32 (279)
127 PRK13982 bifunctional SbtC-lik 31.7 1.6E+02 0.0036 32.6 7.7 35 278-320 71-106 (475)
128 PRK05246 glutathione synthetas 31.6 52 0.0011 33.5 3.7 41 278-321 2-42 (316)
129 PF02441 Flavoprotein: Flavopr 31.3 69 0.0015 28.3 4.1 21 300-320 16-36 (129)
130 PRK10037 cell division protein 31.0 71 0.0015 31.1 4.4 34 278-317 1-36 (250)
131 PRK06756 flavodoxin; Provision 30.8 1E+02 0.0022 27.6 5.1 36 278-318 2-37 (148)
132 PF13241 NAD_binding_7: Putati 30.3 38 0.00083 28.9 2.2 28 293-321 13-40 (103)
133 PRK15490 Vi polysaccharide bio 30.1 90 0.0019 35.5 5.5 34 407-447 279-313 (578)
134 TIGR00872 gnd_rel 6-phosphoglu 30.0 73 0.0016 32.2 4.5 26 295-320 7-32 (298)
135 KOG1192 UDP-glucuronosyl and U 29.6 82 0.0018 33.2 4.9 40 277-323 6-45 (496)
136 PRK06753 hypothetical protein; 29.4 71 0.0015 32.3 4.3 30 278-318 1-30 (373)
137 PRK09730 putative NAD(P)-bindi 29.4 78 0.0017 29.5 4.3 28 293-320 7-34 (247)
138 PRK05562 precorrin-2 dehydroge 29.2 67 0.0015 32.1 3.9 44 278-322 14-59 (223)
139 PRK00094 gpsA NAD(P)H-dependen 28.7 81 0.0018 31.4 4.5 26 295-320 8-33 (325)
140 PRK10964 ADP-heptose:LPS hepto 28.6 94 0.002 31.2 5.0 35 278-320 1-39 (322)
141 PRK08229 2-dehydropantoate 2-r 28.4 73 0.0016 32.2 4.2 32 278-320 3-34 (341)
142 PF03446 NAD_binding_2: NAD bi 28.1 60 0.0013 29.7 3.2 24 295-318 8-31 (163)
143 PRK07236 hypothetical protein; 28.0 93 0.002 32.0 4.9 34 275-319 4-37 (386)
144 TIGR01968 minD_bact septum sit 27.9 91 0.002 29.7 4.5 33 279-317 2-36 (261)
145 CHL00175 minD septum-site dete 27.9 1E+02 0.0023 30.3 5.0 34 278-317 15-50 (281)
146 PRK05708 2-dehydropantoate 2-r 27.8 79 0.0017 32.1 4.3 33 277-320 2-34 (305)
147 PRK11064 wecC UDP-N-acetyl-D-m 27.2 80 0.0017 33.7 4.4 25 295-319 10-34 (415)
148 PLN02166 dTDP-glucose 4,6-dehy 27.1 1E+02 0.0022 33.2 5.1 36 274-319 117-152 (436)
149 PF13460 NAD_binding_10: NADH( 27.0 70 0.0015 28.7 3.4 29 293-321 4-32 (183)
150 PRK14618 NAD(P)H-dependent gly 27.0 85 0.0018 31.9 4.4 33 277-320 4-36 (328)
151 PRK10538 malonic semialdehyde 26.8 98 0.0021 29.4 4.5 23 293-318 9-31 (248)
152 TIGR03453 partition_RepA plasm 26.3 1E+02 0.0022 32.3 4.9 36 276-317 102-139 (387)
153 PRK07454 short chain dehydroge 25.9 1E+02 0.0022 28.9 4.4 27 293-319 12-38 (241)
154 PLN02842 nucleotide kinase 25.9 1.1E+02 0.0023 34.3 5.1 47 274-320 258-307 (505)
155 PRK09271 flavodoxin; Provision 25.7 1.4E+02 0.003 27.4 5.1 35 278-317 1-35 (160)
156 TIGR03371 cellulose_yhjQ cellu 25.5 1E+02 0.0022 29.3 4.4 35 278-318 1-37 (246)
157 TIGR03087 stp1 sugar transfera 25.4 39 0.00085 34.6 1.6 44 387-448 92-135 (397)
158 PRK15059 tartronate semialdehy 25.2 89 0.0019 31.7 4.1 24 295-318 7-30 (292)
159 KOG3742 Glycogen synthase [Car 25.2 11 0.00023 41.9 -2.6 41 280-322 29-71 (692)
160 TIGR01426 MGT glycosyltransfer 25.0 59 0.0013 33.4 2.8 27 294-320 4-32 (392)
161 PRK10818 cell division inhibit 25.0 1.2E+02 0.0025 29.7 4.7 37 278-320 2-40 (270)
162 PLN02501 digalactosyldiacylgly 24.9 1.8E+02 0.004 34.3 6.8 41 278-322 323-366 (794)
163 PRK09134 short chain dehydroge 24.9 1.4E+02 0.0031 28.4 5.3 23 293-318 18-40 (258)
164 cd02040 NifH NifH gene encodes 24.5 1.1E+02 0.0023 29.7 4.4 33 278-317 1-35 (270)
165 PF01972 SDH_sah: Serine dehyd 24.4 76 0.0016 33.1 3.4 31 292-322 99-129 (285)
166 COG2144 Selenophosphate synthe 24.3 45 0.00098 35.1 1.8 28 92-122 186-213 (324)
167 PRK10916 ADP-heptose:LPS hepto 24.0 90 0.002 31.8 3.9 36 278-321 1-40 (348)
168 PF07736 CM_1: Chorismate muta 24.0 68 0.0015 29.4 2.6 28 79-117 8-35 (118)
169 PRK08305 spoVFB dipicolinate s 23.7 94 0.002 30.5 3.8 28 293-320 13-42 (196)
170 cd00138 PLDc Phospholipase D. 23.7 1.6E+02 0.0035 26.4 5.1 45 278-324 35-79 (176)
171 PRK13849 putative crown gall t 23.7 1.2E+02 0.0027 29.7 4.7 34 278-317 1-36 (231)
172 PF10727 Rossmann-like: Rossma 23.5 55 0.0012 29.8 2.0 33 275-318 8-40 (127)
173 PF13528 Glyco_trans_1_3: Glyc 23.3 1.3E+02 0.0028 29.6 4.7 35 278-321 1-37 (318)
174 PRK10446 ribosomal protein S6 23.2 1.2E+02 0.0026 30.5 4.5 35 278-320 1-35 (300)
175 PRK06849 hypothetical protein; 23.2 1.2E+02 0.0025 31.6 4.6 35 276-320 3-37 (389)
176 PRK06924 short chain dehydroge 22.9 1.2E+02 0.0025 28.6 4.2 27 293-319 7-33 (251)
177 PRK01906 tetraacyldisaccharide 22.8 87 0.0019 33.0 3.6 41 279-324 57-99 (338)
178 PLN02662 cinnamyl-alcohol dehy 22.8 96 0.0021 30.5 3.7 28 293-320 10-37 (322)
179 COG0702 Predicted nucleoside-d 22.7 70 0.0015 30.3 2.6 34 291-324 4-37 (275)
180 COG3349 Uncharacterized conser 22.6 1E+02 0.0022 34.4 4.1 32 278-320 1-32 (485)
181 PRK09599 6-phosphogluconate de 22.5 1.3E+02 0.0028 30.4 4.6 25 295-319 7-31 (301)
182 TIGR01777 yfcH conserved hypot 22.2 84 0.0018 30.1 3.1 31 292-322 3-33 (292)
183 COG0451 WcaG Nucleoside-diphos 22.2 81 0.0018 30.5 3.1 30 293-322 6-35 (314)
184 PRK12825 fabG 3-ketoacyl-(acyl 22.2 90 0.002 28.8 3.2 28 293-320 12-39 (249)
185 PRK00652 lpxK tetraacyldisacch 22.2 80 0.0017 33.1 3.2 33 292-324 58-92 (325)
186 PF01494 FAD_binding_3: FAD bi 22.2 1.3E+02 0.0028 29.2 4.5 24 294-319 9-32 (356)
187 PF02374 ArsA_ATPase: Anion-tr 22.0 1.1E+02 0.0025 31.4 4.2 35 278-319 1-37 (305)
188 PRK08163 salicylate hydroxylas 21.9 1.3E+02 0.0028 30.8 4.5 32 277-319 4-35 (396)
189 COG0287 TyrA Prephenate dehydr 21.8 73 0.0016 32.6 2.7 26 292-317 7-32 (279)
190 TIGR03026 NDP-sugDHase nucleot 21.6 92 0.002 32.9 3.5 26 295-320 7-32 (411)
191 PRK07538 hypothetical protein; 21.6 1.1E+02 0.0025 31.7 4.2 30 278-318 1-30 (413)
192 PF02606 LpxK: Tetraacyldisacc 21.5 82 0.0018 32.9 3.1 42 278-324 35-78 (326)
193 PLN02206 UDP-glucuronate decar 21.5 1.2E+02 0.0026 32.7 4.4 33 276-318 118-150 (442)
194 PLN02778 3,5-epimerase/4-reduc 21.5 1.3E+02 0.0029 30.1 4.5 33 276-318 8-40 (298)
195 PLN02256 arogenate dehydrogena 21.4 1.5E+02 0.0032 30.6 4.8 34 276-320 35-68 (304)
196 TIGR00682 lpxK tetraacyldisacc 21.3 99 0.0022 32.2 3.6 41 279-324 29-71 (311)
197 PLN02712 arogenate dehydrogena 21.2 2.9E+02 0.0062 31.8 7.5 34 276-320 51-84 (667)
198 PF08372 PRT_C: Plant phosphor 20.8 73 0.0016 30.3 2.3 32 83-116 41-72 (156)
199 PF04007 DUF354: Protein of un 20.6 3.2E+02 0.007 28.8 7.2 28 297-324 13-40 (335)
200 TIGR03649 ergot_EASG ergot alk 20.1 85 0.0018 30.5 2.7 30 293-322 5-34 (285)
201 PF03721 UDPG_MGDP_dh_N: UDP-g 20.0 1.1E+02 0.0023 29.2 3.3 25 295-319 7-31 (185)
202 PLN00141 Tic62-NAD(P)-related 20.0 2.3E+02 0.0049 27.2 5.6 32 278-319 18-49 (251)
No 1
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=100.00 E-value=4.1e-47 Score=367.41 Aligned_cols=179 Identities=34% Similarity=0.548 Sum_probs=135.4
Q ss_pred eEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCC-CCcceE--------EEEeCCcceEEEEEE
Q 011755 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQ-DTGIRK--------RYRVDRQDIEVAYFQ 349 (478)
Q Consensus 279 kIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~i~~~~-~~~i~~--------~~~v~G~~~~v~V~~ 349 (478)
||||||+||+||+||||||||+++||+||+++||+|+||||+|+.+.... ...... .+.+.. ...+.+++
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~v~~ 79 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKYGFIDEEYFQLEPVRRLSVPFGGPVPVGV-WYEVRVYR 79 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-THHHHHHCTTEEEEEEES-STTCEEEEE-----EEEEE
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccchhhhhhhhcceEEEEecccccccccccc-ceEEEEEE
Confidence 79999999999999999999999999999999999999999998665432 111111 122222 26788999
Q ss_pred EEECCeeEEEccCccccccCCCcCCC---CcccHHHHHHHHHHHHHHhcccCCCCCccCCCCCcEEEECCchhhHHHHHH
Q 011755 350 AYIDGVDFVFLDSPLFRHLGNNIYGG---GREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYL 426 (478)
Q Consensus 350 ~~idGV~vyFId~p~fF~r~~~IYg~---~~~Dn~~RFafFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhTALaPvyL 426 (478)
...+||++|||+++.||+|+ ++|++ +|.|+++||++||+|++++++++ +++|||||||||||||+|+||
T Consensus 80 ~~~~~v~v~~i~~~~~f~r~-~iY~~~~~~~~d~~~rf~~fs~a~le~~~~l-------~~~pDIIH~hDW~tal~p~~l 151 (245)
T PF08323_consen 80 YPVDGVPVYFIDNPEYFDRP-GIYGDNGGDYPDNAERFAFFSRAALELLKKL-------GWKPDIIHCHDWHTALAPLYL 151 (245)
T ss_dssp EEETTEEEEEEESHHHHGSS-SSSBSTSSBHTTHHHHHHHHHHHHHHHHCTC-------T-S-SEEEEECGGGTTHHHHH
T ss_pred EEcCCccEEEecChhhcccc-ceeccCCCcchhHHHHHHHHHHHHHHHHHhh-------CCCCCEEEecCchHHHHHHHh
Confidence 99999999999999999875 59986 68999999999999999999874 368999999999999999999
Q ss_pred HHHhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccc
Q 011755 427 KAYYRDNGLMQYTRSLLVIHNIAHQICQDITWTFSNCMTLLE 468 (478)
Q Consensus 427 K~~y~~~~~f~~iptVfTIHNLayQG~fp~~~~~s~~~~~~~ 468 (478)
|..++.++.+.++|+||||||++|||+++.+.+ ..+.||.
T Consensus 152 k~~~~~~~~~~~~~~v~TIHN~~yqg~~~~~~~--~~~gl~~ 191 (245)
T PF08323_consen 152 KERYQQDPFFANIPTVFTIHNLEYQGIFPPEDL--KALGLPD 191 (245)
T ss_dssp HHCCSS------SEEEEEESSTT---EEEGGGG--GCTT-GG
T ss_pred ccccccccccccceeEEEEcccccCCcCCHHHH--HHcCCCH
Confidence 999888888999999999999999999997665 5566664
No 2
>PRK14098 glycogen synthase; Provisional
Probab=100.00 E-value=6.3e-43 Score=367.95 Aligned_cols=177 Identities=18% Similarity=0.338 Sum_probs=143.5
Q ss_pred CCCCceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCC--CCcc--eEEE--EeCCcceEEEE
Q 011755 274 GANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQ--DTGI--RKRY--RVDRQDIEVAY 347 (478)
Q Consensus 274 ~~~~MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~i~~~~--~~~i--~~~~--~v~G~~~~v~V 347 (478)
+++.|||||||+||+||+||||||||+++||+||+++||+|+||||+|+.+.... .... ...+ .+++....+.+
T Consensus 2 ~~~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (489)
T PRK14098 2 SRRNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKYGTINDRKFRLHDVLRLSDIEVPLKEKTDLLHV 81 (489)
T ss_pred CCCCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCCCchhhhhhccccceEEEEEEEeecCeeEEEEE
Confidence 4566999999999999999999999999999999999999999999999886421 1111 1122 22322222233
Q ss_pred EEEEEC--CeeEEEccCccccccCCCcCCC-----CcccHHHHHHHHHHHHHHhcccCCCCCccCCCCCcEEEECCchhh
Q 011755 348 FQAYID--GVDFVFLDSPLFRHLGNNIYGG-----GREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTA 420 (478)
Q Consensus 348 ~~~~id--GV~vyFId~p~fF~r~~~IYg~-----~~~Dn~~RFafFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhTA 420 (478)
+....+ ||++|||++|.||+|+ ++|++ +|+||++||++||+|+++++.+. +++||||||||||||
T Consensus 82 ~~~~~~~~~v~~~~~~~~~~f~r~-~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~-------~~~pDiiH~hdw~t~ 153 (489)
T PRK14098 82 KVTALPSSKIQTYFLYNEKYFKRN-GLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRL-------GWKPDIIHCHDWYAG 153 (489)
T ss_pred EEecccCCCceEEEEeCHHHcCCC-CcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhc-------CCCCCEEEecCcHHH
Confidence 333344 7999999999999975 79975 47899999999999999998753 368999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCcEEEEEcCCCCcccccccc
Q 011755 421 LLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQICQDITW 458 (478)
Q Consensus 421 LaPvyLK~~y~~~~~f~~iptVfTIHNLayQG~fp~~~ 458 (478)
++|++++..+.....+.++|+|+||||++|||.+|...
T Consensus 154 l~~~~l~~~~~~~~~~~~~~~V~TiHn~~~qg~~~~~~ 191 (489)
T PRK14098 154 LVPLLLKTVYADHEFFKDIKTVLTIHNVYRQGVLPFKV 191 (489)
T ss_pred HHHHHHHHHhhhccccCCCCEEEEcCCCcccCCCCHHH
Confidence 99999998877666677899999999999999998654
No 3
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.4e-42 Score=386.94 Aligned_cols=174 Identities=26% Similarity=0.410 Sum_probs=143.9
Q ss_pred CCCceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCCCC-----cceEEEEeCCcceEEEEEE
Q 011755 275 ANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDT-----GIRKRYRVDRQDIEVAYFQ 349 (478)
Q Consensus 275 ~~~MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~i~~~~~~-----~i~~~~~v~G~~~~v~V~~ 349 (478)
++.|||||||+||+||+||||||||+++||+||+++||+|+||||+|+.+...... .....+.++|....++||+
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ 558 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKIWT 558 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCcccChhhhhcccccceEEEEeecCceeEEEEEE
Confidence 56799999999999999999999999999999999999999999999977522111 1112223566556689999
Q ss_pred EEECCeeEEEccCc---cccccCCCcCCCCcccHHHHHHHHHHHHHHhcccCCCCCccCCCCCcEEEECCchhhHHHHHH
Q 011755 350 AYIDGVDFVFLDSP---LFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYL 426 (478)
Q Consensus 350 ~~idGV~vyFId~p---~fF~r~~~IYg~~~~Dn~~RFafFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhTALaPvyL 426 (478)
+.++||++|||+++ .||+| +++|| +.||++||+|||+|+++++.+. +++|||||||||||||+|.++
T Consensus 559 ~~~~GV~vyfId~~~~~~fF~R-~~iYg--~~Dn~~RF~~FsrAaLe~~~~~-------~~~PDIIH~HDW~TaLV~pll 628 (977)
T PLN02939 559 GTVEGLPVYFIEPQHPSKFFWR-AQYYG--EHDDFKRFSYFSRAALELLYQS-------GKKPDIIHCHDWQTAFVAPLY 628 (977)
T ss_pred EEECCeeEEEEecCCchhccCC-CCCCC--CccHHHHHHHHHHHHHHHHHhc-------CCCCCEEEECCccHHHHHHHH
Confidence 99999999999964 38886 57998 5799999999999999999763 368999999999999985555
Q ss_pred HHHhhcCCCCCCCcEEEEEcCCCCccccccccc
Q 011755 427 KAYYRDNGLMQYTRSLLVIHNIAHQICQDITWT 459 (478)
Q Consensus 427 K~~y~~~~~f~~iptVfTIHNLayQG~fp~~~~ 459 (478)
+..|...+ +.++|+||||||++|||+||+..+
T Consensus 629 ~~~y~~~~-~~~~ktVfTIHNl~yQG~f~~~~l 660 (977)
T PLN02939 629 WDLYAPKG-FNSARICFTCHNFEYQGTAPASDL 660 (977)
T ss_pred HHHHhhcc-CCCCcEEEEeCCCcCCCcCCHHHH
Confidence 55565544 477999999999999999987664
No 4
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=2.3e-42 Score=363.37 Aligned_cols=170 Identities=29% Similarity=0.340 Sum_probs=139.8
Q ss_pred CCceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCCC-CcceEEEEeC-CcceEEEEEEEEEC
Q 011755 276 NVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQD-TGIRKRYRVD-RQDIEVAYFQAYID 353 (478)
Q Consensus 276 ~~MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~i~~~~~-~~i~~~~~v~-G~~~~v~V~~~~id 353 (478)
+.|||||||+||+||+||||||||+++||+||+++||+|+||||+|+.+..... ......+.+. + ..+.+++...+
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 79 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYPAVLAGIEDAEQVHSFPDLFG--GPARLLAARAG 79 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCcchhhhhcCceEEEEEeeeCC--ceEEEEEEEeC
Confidence 569999999999999999999999999999999999999999999998853211 1111122211 2 25788889999
Q ss_pred CeeEEEccCccccccCCCcCCC----CcccHHHHHHHHHHHHHHhcccCCCCCccCCCCCcEEEECCchhhHHHHHHHHH
Q 011755 354 GVDFVFLDSPLFRHLGNNIYGG----GREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAY 429 (478)
Q Consensus 354 GV~vyFId~p~fF~r~~~IYg~----~~~Dn~~RFafFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhTALaPvyLK~~ 429 (478)
||++|||++|.||+|++++|++ +|.||++||+|||+|++|+++... .+++|||||||||||+++|++|+..
T Consensus 80 ~v~~~~~~~~~~f~r~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~-----~~~~pDIiH~Hdw~~~l~~~~l~~~ 154 (485)
T PRK14099 80 GLDLFVLDAPHLYDRPGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLV-----PGFVPDIVHAHDWQAGLAPAYLHYS 154 (485)
T ss_pred CceEEEEeChHhhCCCCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhc-----cCCCCCEEEECCcHHHHHHHHHHhC
Confidence 9999999999999987679963 588999999999999999986421 1368999999999999999999742
Q ss_pred hhcCCCCCCCcEEEEEcCCCCccccccc
Q 011755 430 YRDNGLMQYTRSLLVIHNIAHQICQDIT 457 (478)
Q Consensus 430 y~~~~~f~~iptVfTIHNLayQG~fp~~ 457 (478)
. ..++|+|+||||++|||.|+..
T Consensus 155 ~-----~~~~~~V~TiHn~~~qg~~~~~ 177 (485)
T PRK14099 155 G-----RPAPGTVFTIHNLAFQGQFPRE 177 (485)
T ss_pred C-----CCCCCEEEeCCCCCCCCcCCHH
Confidence 1 1358999999999999998753
No 5
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=6.4e-39 Score=331.59 Aligned_cols=170 Identities=40% Similarity=0.573 Sum_probs=147.5
Q ss_pred ceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCCCC----cceEEEEeCCcceEEEEEEEEEC
Q 011755 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDT----GIRKRYRVDRQDIEVAYFQAYID 353 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~i~~~~~~----~i~~~~~v~G~~~~v~V~~~~id 353 (478)
|||||||+|++||+||||||||+++||+||+++||+|+||||+|+.+...... .....+.+++....++|++...+
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIEDEVDDQVKVVELVDLSVGPRTLYVKVFEGVVE 80 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCcChhhhhccCeEEEEEEEEeecCceeEEEEEEEEEC
Confidence 89999999999999999999999999999999999999999999987543211 11234456778889999999999
Q ss_pred CeeEEEccCccccccCCCcCCCCcccHHHHHHHHHHHHHHhcccCCCCCccCCCCCcEEEECCchhhHHHHHHHHHhhcC
Q 011755 354 GVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDN 433 (478)
Q Consensus 354 GV~vyFId~p~fF~r~~~IYg~~~~Dn~~RFafFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhTALaPvyLK~~y~~~ 433 (478)
||++|||+++.||+|++.+|+++|.|+..||++||+|+++++++. +++|||||||||||+++|.+++..++..
T Consensus 81 ~v~~~~i~~~~~~~r~~~~y~~~~~d~~~r~~~f~~a~~~~~~~~-------~~~~DiiH~hdw~~~~~~~~l~~~~~~~ 153 (473)
T TIGR02095 81 GVPVYFIDNPSLFDRPGGIYGDDYPDNAERFAFFSRAAAELLSGL-------GWQPDVVHAHDWHTALVPALLKAVYRPN 153 (473)
T ss_pred CceEEEEECHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhc-------CCCCCEEEECCcHHHHHHHHHHhhccCC
Confidence 999999999999987656999888999999999999999998763 2579999999999999999999766421
Q ss_pred CCCCCCcEEEEEcCCCCcccccccc
Q 011755 434 GLMQYTRSLLVIHNIAHQICQDITW 458 (478)
Q Consensus 434 ~~f~~iptVfTIHNLayQG~fp~~~ 458 (478)
++|+|+||||+.|||.+|...
T Consensus 154 ----~~~~v~TiH~~~~~g~~~~~~ 174 (473)
T TIGR02095 154 ----PIKTVFTIHNLAYQGVFPADD 174 (473)
T ss_pred ----CCCEEEEcCCCccCCcCCHHH
Confidence 489999999999999988654
No 6
>PLN02316 synthase/transferase
Probab=100.00 E-value=2.2e-36 Score=340.88 Aligned_cols=170 Identities=25% Similarity=0.441 Sum_probs=141.5
Q ss_pred CCCCCCceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCCCCcce--EEEEeCCcceEEEEEE
Q 011755 272 LAGANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIR--KRYRVDRQDIEVAYFQ 349 (478)
Q Consensus 272 ~a~~~~MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~i~~~~~~~i~--~~~~v~G~~~~v~V~~ 349 (478)
++.+++|||||||+||+||+|||||||||++||+||+++||+|+||||+|+.+.......+. ..+.+++ ..+.|++
T Consensus 582 ~~~~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~~~~~~~~~~~~~~~~--~~~~v~~ 659 (1036)
T PLN02316 582 IAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSHVKDLHYQRSYSWGG--TEIKVWF 659 (1036)
T ss_pred CCCCCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchhhcccceEEEEeccCC--EEEEEEE
Confidence 34456799999999999999999999999999999999999999999999976432111121 2333333 4678899
Q ss_pred EEECCeeEEEccCc-cccccCCCcCCCCcccHHHHHHHHHHHHHHhcccCCCCCccCCCCCcEEEECCchhhHHHHHHHH
Q 011755 350 AYIDGVDFVFLDSP-LFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKA 428 (478)
Q Consensus 350 ~~idGV~vyFId~p-~fF~r~~~IYg~~~~Dn~~RFafFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhTALaPvyLK~ 428 (478)
+..+||++|||+++ .||.+ +.+|+ +.||+.||++||+|+++++++. +++||||||||||||++|++++.
T Consensus 660 ~~~~GV~vyfl~~~~~~F~r-~~~Yg--~~Dd~~RF~~F~~Aale~l~~~-------~~~PDIIHaHDW~talva~llk~ 729 (1036)
T PLN02316 660 GKVEGLSVYFLEPQNGMFWA-GCVYG--CRNDGERFGFFCHAALEFLLQS-------GFHPDIIHCHDWSSAPVAWLFKD 729 (1036)
T ss_pred EEECCcEEEEEeccccccCC-CCCCC--chhHHHHHHHHHHHHHHHHHhc-------CCCCCEEEECCChHHHHHHHHHH
Confidence 99999999999998 59986 57997 6799999999999999998763 35899999999999999999998
Q ss_pred HhhcCCCCCCCcEEEEEcCCCCcccc
Q 011755 429 YYRDNGLMQYTRSLLVIHNIAHQICQ 454 (478)
Q Consensus 429 ~y~~~~~f~~iptVfTIHNLayQG~f 454 (478)
.|+..+ +.++|+|+||||++||+.+
T Consensus 730 ~~~~~~-~~~~p~V~TiHnl~~~~n~ 754 (1036)
T PLN02316 730 HYAHYG-LSKARVVFTIHNLEFGANH 754 (1036)
T ss_pred hhhhhc-cCCCCEEEEeCCcccchhH
Confidence 776544 4679999999999998754
No 7
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=3.3e-36 Score=312.55 Aligned_cols=163 Identities=36% Similarity=0.467 Sum_probs=134.7
Q ss_pred ceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCCCCcceEEEEeCCcceEEEEEEE--EECCe
Q 011755 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQA--YIDGV 355 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~i~~~~~~~i~~~~~v~G~~~~v~V~~~--~idGV 355 (478)
|||+|||+|++|++|+|||||||++||++|+++||+|+||||+|+.+..... .......+ ..+.|+.. ..+||
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~gv 75 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGYPAIREKLR-DAQVVGRL----DLFTVLFGHLEGDGV 75 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCCcchhhhhc-CceEEEEe----eeEEEEEEeEEcCCc
Confidence 8999999999999999999999999999999999999999999997653211 11111111 12566665 45899
Q ss_pred eEEEccCccccccCCCcCCCCcccHHHHHHHHHHHHHHhcccCCCCCccCCCCCcEEEECCchhhHHHHHHHHHhhcCCC
Q 011755 356 DFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGL 435 (478)
Q Consensus 356 ~vyFId~p~fF~r~~~IYg~~~~Dn~~RFafFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhTALaPvyLK~~y~~~~~ 435 (478)
++|||+++.||+| +.+|+ +.|+..||++||+|+++++++. +++||||||||||||++|.+|+..| .. .
T Consensus 76 ~v~~v~~~~~~~~-~~~y~--~~d~~~r~~~f~~~~~~~~~~~-------~~~pDiiH~h~w~~~~~~~~l~~~~-~~-~ 143 (466)
T PRK00654 76 PVYLIDAPHLFDR-PSGYG--YPDNGERFAFFSWAAAEFAEGL-------DPRPDIVHAHDWHTGLIPALLKEKY-WR-G 143 (466)
T ss_pred eEEEEeCHHHcCC-CCCCC--CcChHHHHHHHHHHHHHHHHhc-------CCCCceEEECCcHHHHHHHHHHHhh-hc-c
Confidence 9999999999986 47897 6799999999999999998764 2479999999999999999999776 32 2
Q ss_pred CCCCcEEEEEcCCCCccccccc
Q 011755 436 MQYTRSLLVIHNIAHQICQDIT 457 (478)
Q Consensus 436 f~~iptVfTIHNLayQG~fp~~ 457 (478)
+.++|+|+||||+.|||.++.+
T Consensus 144 ~~~~~~v~TiH~~~~~g~~~~~ 165 (466)
T PRK00654 144 YPDIKTVFTIHNLAYQGLFPAE 165 (466)
T ss_pred CCCCCEEEEcCCCcCCCcCCHH
Confidence 4579999999999999998753
No 8
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.9e-36 Score=318.08 Aligned_cols=168 Identities=34% Similarity=0.433 Sum_probs=133.6
Q ss_pred ceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCCCCcce----EEEEeCCcceEEEEEEEEEC
Q 011755 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIR----KRYRVDRQDIEVAYFQAYID 353 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~i~~~~~~~i~----~~~~v~G~~~~v~V~~~~id 353 (478)
|||++||+|++||+||||||||+++||++|++.|++|+|++|.|+.+........+ ..+.+++....+.+.....+
T Consensus 1 M~Il~v~~E~~p~vK~GGLaDv~~alpk~L~~~g~~v~v~lP~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (487)
T COG0297 1 MKILFVASEIFPFVKTGGLADVVGALPKALAKRGVDVRVLLPSYPKVQKEWRDLLKVVGKFGVLKGGRAQLFIVKEYGKD 80 (487)
T ss_pred CcceeeeeeecCccccCcHHHHHHHhHHHHHhcCCeEEEEcCCchhhhhhhccccceeeEeeeeecccceEEEEEeeccc
Confidence 89999999999999999999999999999999999999999999955433221111 12223443334444444434
Q ss_pred -CeeEEEccCccccccC-CCcCCCCcccHHHHHHHHHHHHHHhcccCCCCCccCCCCCcEEEECCchhhHHHHHHHHHhh
Q 011755 354 -GVDFVFLDSPLFRHLG-NNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYR 431 (478)
Q Consensus 354 -GV~vyFId~p~fF~r~-~~IYg~~~~Dn~~RFafFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhTALaPvyLK~~y~ 431 (478)
||++|||++|.+|+|. ...|+ +.||.+||++|++|+++++... .. . +.|||||||||||+|+|+++|..|+
T Consensus 81 ~~v~~~lid~~~~f~r~~~~~~~--~~d~~~Rf~~F~~a~~~~~~~~---~~-~-~~pDIvH~hDWqt~L~~~~lk~~~~ 153 (487)
T COG0297 81 GGVDLYLIDNPALFKRPDSTLYG--YYDNAERFAFFSLAAAELAPLG---LI-S-WLPDIVHAHDWQTGLLPAYLKQRYR 153 (487)
T ss_pred CCCcEEEecChhhcCccccccCC--CCcHHHHHHHHHHHHHHHhhhc---CC-C-CCCCEEEeecHHHHHHHHHHhhccc
Confidence 4999999999999973 34555 7899999999999999998642 11 1 5899999999999999999998762
Q ss_pred cCCCCCCCcEEEEEcCCCCccccc
Q 011755 432 DNGLMQYTRSLLVIHNIAHQICQD 455 (478)
Q Consensus 432 ~~~~f~~iptVfTIHNLayQG~fp 455 (478)
.+..+|+||||||++|||.|+
T Consensus 154 ---~~~~i~tVfTIHNl~~qG~~~ 174 (487)
T COG0297 154 ---SGYIIPTVFTIHNLAYQGLFR 174 (487)
T ss_pred ---ccccCCeEEEEeeceeecccc
Confidence 234699999999999999998
No 9
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=100.00 E-value=3.7e-35 Score=300.96 Aligned_cols=171 Identities=37% Similarity=0.576 Sum_probs=143.8
Q ss_pred eEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCCCCcce----EEEEeCCcceEEEEEEEEECC
Q 011755 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIR----KRYRVDRQDIEVAYFQAYIDG 354 (478)
Q Consensus 279 kIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~i~~~~~~~i~----~~~~v~G~~~~v~V~~~~idG 354 (478)
||||||+|++||+|+||||||+++||+||+++||+|+||||+|+.+......... ....+.+....+++++...+|
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILDELRGQLLVLRLFGVPVGGRPEYVGVFELPVDG 80 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcchhhHhccCeEEEEEEeeccCCceeEEEEEEEEeCC
Confidence 7999999999999999999999999999999999999999999987643221111 123456777889999999999
Q ss_pred eeEEEccCccccccCCCcCC---CCcccHHHHHHHHHHHHHHhcccCCCCCccCCCCCcEEEECCchhhHHHHHHHHHhh
Q 011755 355 VDFVFLDSPLFRHLGNNIYG---GGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYR 431 (478)
Q Consensus 355 V~vyFId~p~fF~r~~~IYg---~~~~Dn~~RFafFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhTALaPvyLK~~y~ 431 (478)
|++||+++|.||.+. .+|+ .+|.|+..||++||+|+++++++. +++|||||||||||+++|.+++..+.
T Consensus 81 v~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~-------~~~pDviH~hd~~t~~~~~~l~~~~~ 152 (476)
T cd03791 81 VPVYFLDNPDYFDRP-GLYDDSGYDYEDNAERFALFSRAALELLRRL-------GWKPDIIHCHDWHTGLVPALLKEKYA 152 (476)
T ss_pred ceEEEEcChHHcCCC-CCCCccCCCCccHHHHHHHHHHHHHHHHHhc-------CCCCcEEEECchHHHHHHHHHHHhhc
Confidence 999999999999764 3332 247899999999999999998764 25899999999999999999998775
Q ss_pred cCCCCCCCcEEEEEcCCCCcccccccc
Q 011755 432 DNGLMQYTRSLLVIHNIAHQICQDITW 458 (478)
Q Consensus 432 ~~~~f~~iptVfTIHNLayQG~fp~~~ 458 (478)
. ..+.++|+|+||||+.|||.++...
T Consensus 153 ~-~~~~~~~~v~tiH~~~~~g~~~~~~ 178 (476)
T cd03791 153 D-PFFKNIKTVFTIHNLAYQGVFPLEA 178 (476)
T ss_pred c-ccCCCCCEEEEeCCCCCCCCCCHHH
Confidence 4 4466899999999999999887654
No 10
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.81 E-value=7.9e-20 Score=198.63 Aligned_cols=172 Identities=19% Similarity=0.238 Sum_probs=130.6
Q ss_pred EEEEecccC-----CccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCC-CC------CC--------CC---C------
Q 011755 280 VILVAAECG-----PWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN-YA------EP--------QD---T------ 330 (478)
Q Consensus 280 IL~VSsE~a-----PfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~-i~------~~--------~~---~------ 330 (478)
|.++|.|+. | +=.||||..+++-=++++.+|.....+.-+|.. +. .. .+ .
T Consensus 1 ~ayf~~E~g~~~~~p-~ysGGLG~LAgd~l~saa~l~~p~~g~gl~Y~~Gyf~Q~i~~~g~Q~e~~~~~~~~~~p~~~~~ 79 (601)
T TIGR02094 1 VAYFSMEYGLHESLP-IYSGGLGVLAGDHLKSASDLGLPLVAVGLLYKQGYFRQRLDEDGWQQEAYPNNDFESLPIEKVL 79 (601)
T ss_pred CeEEeeccccCCCCC-ccCchHHHHHHHHHHHHHhCCCCeEEEEeccCCCceeEEECCCCceeecCCccccCCCceEEEe
Confidence 568888854 5 348999999999999999999999999988863 11 00 00 0
Q ss_pred -----cceEEEEeCCcceEEEEEEEEECCeeEEEccCcc----ccccCC--CcCCCCcccHHHHHHHHHHHHHHhcccCC
Q 011755 331 -----GIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPL----FRHLGN--NIYGGGREDILKRMVLFCKAAIEIPWYVP 399 (478)
Q Consensus 331 -----~i~~~~~v~G~~~~v~V~~~~idGV~vyFId~p~----fF~r~~--~IYg~~~~Dn~~RFafFskAaLEll~~~~ 399 (478)
.+...+.++|....+++|+...++|++||++++. +|+|.. .+|++++.+...||+|||+|++++++.+
T Consensus 80 ~~~g~~~~~~v~i~g~~~~~rlw~~~~~~v~lylld~~~~~n~~~~R~it~~LY~~D~~~R~~Qe~fl~~a~l~~l~~l- 158 (601)
T TIGR02094 80 DTDGKWLKISVRIRGRDVYAKVWRVQVGRVPLYLLDTNIPENSEDDRWITGRLYGGDKEMRIAQEIVLGIGGVRALRAL- 158 (601)
T ss_pred cCCCCeEEEEEecCCcEEEEEEEEEEeCCCCEEEecCCCcccchhhcCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHc-
Confidence 0112344677788899999999999999999996 888753 4798765566666699999999999764
Q ss_pred CCCccCCCCCcEEEECCchhhHHHHHHHHHh-----hcCCCCC--CCcEEEEEcCCCCccc--cccccc
Q 011755 400 CGGVCYGDGNLVFIANDWHTALLPVYLKAYY-----RDNGLMQ--YTRSLLVIHNIAHQIC--QDITWT 459 (478)
Q Consensus 400 ~g~~~~g~~PDIIHaHDWhTALaPvyLK~~y-----~~~~~f~--~iptVfTIHNLayQG~--fp~~~~ 459 (478)
+++|||||||||||||+|++|.... .....+. +.++||||||+.|||. ||.+.+
T Consensus 159 ------~~~pdviH~ND~Htal~~~el~r~l~~~~~~~~~a~~~~~~~~vfTiHt~~~qG~e~f~~~~~ 221 (601)
T TIGR02094 159 ------GIDPDVYHLNEGHAAFVTLERIRELIAQGLSFEEAWEAVRKSSLFTTHTPVPAGHDVFPEDLM 221 (601)
T ss_pred ------CCCceEEEeCCchHHHHHHHHHHHHHHcCCCHHHHHHhcCCeEEEeCCCchHHHhhhcCHHHH
Confidence 3589999999999999999974321 1111112 4789999999999998 987664
No 11
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=99.75 E-value=5e-18 Score=188.96 Aligned_cols=170 Identities=21% Similarity=0.251 Sum_probs=130.3
Q ss_pred eEEEEecccC-----CccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCC-CCC------C--------CC---C-----
Q 011755 279 NVILVAAECG-----PWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN-YAE------P--------QD---T----- 330 (478)
Q Consensus 279 kIL~VSsE~a-----PfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~-i~~------~--------~~---~----- 330 (478)
-|.++|.|+. | +=.||||..++.-=++++.+|..+.-|--.|.. +.. . .+ .
T Consensus 87 ~~aYFs~E~gl~~~lp-iYsGGLG~LAgd~lksasdLg~P~vgvGllY~~GyF~Q~i~~dG~Q~e~~~~~~~~~~p~~~~ 165 (778)
T cd04299 87 VAAYFSMEFGLHESLP-IYSGGLGILAGDHLKAASDLGLPLVGVGLLYRQGYFRQRLDADGWQQETYPVNDFEQLPLEPV 165 (778)
T ss_pred eeEEeccccccCCCCC-ccCchHHHHHHHHHHHHHhCCCCEEEEEeCcCCCCeEEEECCCCceeecCCCcCCCCCceEEE
Confidence 3449999964 5 448999999999999999999999999988863 110 0 00 0
Q ss_pred ------cceEEEEeCCcceEEEEEEEEECCeeEEEccCcc----ccccCC--CcCCCCcccHHHH---HHHHHHHHHHhc
Q 011755 331 ------GIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPL----FRHLGN--NIYGGGREDILKR---MVLFCKAAIEIP 395 (478)
Q Consensus 331 ------~i~~~~~v~G~~~~v~V~~~~idGV~vyFId~p~----fF~r~~--~IYg~~~~Dn~~R---FafFskAaLEll 395 (478)
.+...+.++|....+++|+..+++|++||++++. +|+|.- .+||+ |+..| |+|||+|+++++
T Consensus 166 ~~~~G~~~~v~v~l~g~~v~~rvw~~~vg~v~lylLDtd~~~n~~~~R~iT~~LYg~---D~~~Rl~Qe~~Lg~agl~~L 242 (778)
T cd04299 166 RDADGEPVRVSVELPGRTVYARVWKAQVGRVPLYLLDTDIPENSPDDRGITDRLYGG---DQETRIQQEILLGIGGVRAL 242 (778)
T ss_pred ecCCCCeEEEEEeeCCCceEEEEEEEEcCCCCEEEecCCccccchhhcccccCCCCC---cHHHHHHHHHHHHHHHHHHH
Confidence 1123445678788899999999999999999987 477642 47985 57889 599999999999
Q ss_pred ccCCCCCccCCCCCcEEEECCchhhHHHH-----HHHHH-hhcCCC--CCCCcEEEEEcCCCCcc--ccccccc
Q 011755 396 WYVPCGGVCYGDGNLVFIANDWHTALLPV-----YLKAY-YRDNGL--MQYTRSLLVIHNIAHQI--CQDITWT 459 (478)
Q Consensus 396 ~~~~~g~~~~g~~PDIIHaHDWhTALaPv-----yLK~~-y~~~~~--f~~iptVfTIHNLayQG--~fp~~~~ 459 (478)
+.+ ++.|||||||||||||+|+ |++.. +..... ....++||||||+.+|| +||.+.+
T Consensus 243 r~l-------g~~pdViH~ND~Haal~~lE~~R~ll~~~g~~~~~A~e~vr~~tvFTtHTpvpqG~d~Fp~~l~ 309 (778)
T cd04299 243 RAL-------GIKPTVYHMNEGHAAFLGLERIRELMAEGGLSFDEALEAVRASTVFTTHTPVPAGHDRFPPDLV 309 (778)
T ss_pred HHh-------CCCCeEEEeCCCcHHHHHHHHHHHHHHHcCCCHHHHHHhhCCeEEEecCCchHHHhhhCCHHHH
Confidence 764 3579999999999999999 77653 221111 12478999999999999 9997664
No 12
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.96 E-value=5.1e-09 Score=105.22 Aligned_cols=129 Identities=16% Similarity=0.202 Sum_probs=84.0
Q ss_pred EEEEecccCCcc-----ccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCCCCcceEEEEeCCcceEEEEEEEEECC
Q 011755 280 VILVAAECGPWS-----KTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDG 354 (478)
Q Consensus 280 IL~VSsE~aPfa-----KtGGLGDVVgsLPkALa~~GheV~VItP~Yg~i~~~~~~~i~~~~~v~G~~~~v~V~~~~idG 354 (478)
|++|+....|+. ..||.+.++..|.++|+++||+|.|+++.+...... . ....+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~-~-------------------~~~~~~ 60 (405)
T TIGR03449 1 VAMISMHTSPLQQPGTGDAGGMNVYILETATELARRGIEVDIFTRATRPSQPP-V-------------------VEVAPG 60 (405)
T ss_pred CeEEeccCCccccCCCcCCCCceehHHHHHHHHhhCCCEEEEEecccCCCCCC-c-------------------cccCCC
Confidence 578888888865 469999999999999999999999999875421100 0 012356
Q ss_pred eeEEEccCccccccCCCcCCCCcccHHHHHHHHHHHHH-HhcccCCCCCccCCCCCcEEEECCchhhHHHHHHHHHhhcC
Q 011755 355 VDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAI-EIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDN 433 (478)
Q Consensus 355 V~vyFId~p~fF~r~~~IYg~~~~Dn~~RFafFskAaL-Ell~~~~~g~~~~g~~PDIIHaHDWhTALaPvyLK~~y~~~ 433 (478)
+.++.+....+... ........+..|....+ .++++. ..+|||||+|+|.+++++.+++..+
T Consensus 61 ~~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~Diih~h~~~~~~~~~~~~~~~--- 123 (405)
T TIGR03449 61 VRVRNVVAGPYEGL-------DKEDLPTQLCAFTGGVLRAEARHE-------PGYYDLIHSHYWLSGQVGWLLRDRW--- 123 (405)
T ss_pred cEEEEecCCCcccC-------CHHHHHHHHHHHHHHHHHHHhhcc-------CCCCCeEEechHHHHHHHHHHHHhc---
Confidence 77766543332210 01111122333444444 344332 1368999999999999888876532
Q ss_pred CCCCCCcEEEEEcCCC
Q 011755 434 GLMQYTRSLLVIHNIA 449 (478)
Q Consensus 434 ~~f~~iptVfTIHNLa 449 (478)
++|+|+|+|.+.
T Consensus 124 ----~~p~v~t~h~~~ 135 (405)
T TIGR03449 124 ----GVPLVHTAHTLA 135 (405)
T ss_pred ----CCCEEEeccchH
Confidence 589999999863
No 13
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=98.88 E-value=1.5e-08 Score=86.23 Aligned_cols=106 Identities=24% Similarity=0.245 Sum_probs=59.5
Q ss_pred CcHHHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCCCCcceEEEEeCCcceEEEEEEEEECCeeEEEccCccccccCCCcC
Q 011755 294 GGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIY 373 (478)
Q Consensus 294 GGLGDVVgsLPkALa~~GheV~VItP~Yg~i~~~~~~~i~~~~~v~G~~~~v~V~~~~idGV~vyFId~p~fF~r~~~IY 373 (478)
||.+.++..|.++|+++||+|+|++|.+...... ...+|++++-+.-+... ...
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~----~~~ 54 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPEDDE----------------------EEEDGVRVHRLPLPRRP----WPL 54 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GGG-S----------------------EEETTEEEEEE--S-SS----SGG
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCcccc----------------------cccCCceEEeccCCccc----hhh
Confidence 8999999999999999999999999987643210 12346666554433211 011
Q ss_pred CCCcccHHHHHHHHHHHHHHhc--ccCCCCCccCCCCCcEEEECCchhhHHHHHHHHHhhcCCCCCCCcEEEEEcCCCC
Q 011755 374 GGGREDILKRMVLFCKAAIEIP--WYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAH 450 (478)
Q Consensus 374 g~~~~Dn~~RFafFskAaLEll--~~~~~g~~~~g~~PDIIHaHDWhTALaPvyLK~~y~~~~~f~~iptVfTIHNLay 450 (478)
. +. + +..+...++ .. .+|||||||+|++++++.+++... ++|+|+|+|+..+
T Consensus 55 ~-----~~-~---~~~~~~~~l~~~~---------~~~Dvv~~~~~~~~~~~~~~~~~~-------~~p~v~~~h~~~~ 108 (160)
T PF13579_consen 55 R-----LL-R---FLRRLRRLLAARR---------ERPDVVHAHSPTAGLVAALARRRR-------GIPLVVTVHGTLF 108 (160)
T ss_dssp G-----HC-C---HHHHHHHHCHHCT------------SEEEEEHHHHHHHHHHHHHHH-------T--EEEE-SS-T-
T ss_pred h-----hH-H---HHHHHHHHHhhhc---------cCCeEEEecccchhHHHHHHHHcc-------CCcEEEEECCCch
Confidence 1 01 1 112223333 22 378999999999888888776332 5899999998643
No 14
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.87 E-value=2.9e-08 Score=103.06 Aligned_cols=124 Identities=17% Similarity=0.110 Sum_probs=79.8
Q ss_pred cccCcHHHHHhHHHHHHHHCCC--eEEEEeeCCCCCCCCCCCcceEEEEeCCcceEEEEEEEEECCeeEEEccCcccccc
Q 011755 291 SKTGGLGDVAGALPKALARRGH--RVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLFRHL 368 (478)
Q Consensus 291 aKtGGLGDVVgsLPkALa~~Gh--eV~VItP~Yg~i~~~~~~~i~~~~~v~G~~~~v~V~~~~idGV~vyFId~p~fF~r 368 (478)
-.+||...++..|.++|+++|| +|.|+++.|+.-...... .. -+....+|++++.+....
T Consensus 23 p~~GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~--------~~------~~~~~~~gv~v~r~~~~~---- 84 (439)
T TIGR02472 23 ADTGGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDY--------AQ------PIERIAPGARIVRLPFGP---- 84 (439)
T ss_pred CCCCCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCcc--------CC------CeeEeCCCcEEEEecCCC----
Confidence 3479999999999999999997 999999876421000000 00 012335788887664321
Q ss_pred CCCcCCCCcccHHHHHHHHHHHHHHhcccCCCCCccCCCCCcEEEECCchhhHHHHHHHHHhhcCCCCCCCcEEEEEcCC
Q 011755 369 GNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNI 448 (478)
Q Consensus 369 ~~~IYg~~~~Dn~~RFafFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhTALaPvyLK~~y~~~~~f~~iptVfTIHNL 448 (478)
..|.. ..+-..-+.+|+.+++.++++. +.+|||||||+|+++++..+++... ++|+|+|+|++
T Consensus 85 --~~~~~-~~~~~~~~~~~~~~l~~~~~~~-------~~~~DvIH~h~~~~~~~~~~~~~~~-------~~p~V~t~H~~ 147 (439)
T TIGR02472 85 --RRYLR-KELLWPYLDELADNLLQHLRQQ-------GHLPDLIHAHYADAGYVGARLSRLL-------GVPLIFTGHSL 147 (439)
T ss_pred --CCCcC-hhhhhhhHHHHHHHHHHHHHHc-------CCCCCEEEEcchhHHHHHHHHHHHh-------CCCEEEecccc
Confidence 11110 0111112346677777776542 1368999999999999988776532 58999999986
Q ss_pred C
Q 011755 449 A 449 (478)
Q Consensus 449 a 449 (478)
.
T Consensus 148 ~ 148 (439)
T TIGR02472 148 G 148 (439)
T ss_pred c
Confidence 4
No 15
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.77 E-value=5e-08 Score=112.38 Aligned_cols=156 Identities=14% Similarity=0.070 Sum_probs=87.4
Q ss_pred CCceEEEEecc---------cCCccccCcHHHHHhHHHHHHHHCC--CeEEEEeeCCCCCCCCCCCcceEEEEeCCc-ce
Q 011755 276 NVMNVILVAAE---------CGPWSKTGGLGDVAGALPKALARRG--HRVMVVAPHYGNYAEPQDTGIRKRYRVDRQ-DI 343 (478)
Q Consensus 276 ~~MkIL~VSsE---------~aPfaKtGGLGDVVgsLPkALa~~G--heV~VItP~Yg~i~~~~~~~i~~~~~v~G~-~~ 343 (478)
+.|.|+||+-= +.-=.=|||...+|..|++||+++| |+|.|+|.....-.-..+....... ++.. ..
T Consensus 168 ~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~-~~~~~~~ 246 (1050)
T TIGR02468 168 KKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEM-LTPRSSE 246 (1050)
T ss_pred CceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCcccc-ccccccc
Confidence 45889998743 3222568999999999999999998 8999999876421000000000000 0000 00
Q ss_pred EEEEEEEEECCeeEEEccCccccccCCCcCCCCcccHHHHHHHHHHHHHHhccc--------CCCCCccCCCCCcEEEEC
Q 011755 344 EVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWY--------VPCGGVCYGDGNLVFIAN 415 (478)
Q Consensus 344 ~v~V~~~~idGV~vyFId~p~fF~r~~~IYg~~~~Dn~~RFafFskAaLEll~~--------~~~g~~~~g~~PDIIHaH 415 (478)
.........+|+.++.|....- .-|-. -.+-....--|..++++.+.+ .. ++. +..|||||+|
T Consensus 247 ~~~~~~~~~~g~rIvRip~GP~-----~~~l~-Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~-~~~--~~~pDvIHaH 317 (1050)
T TIGR02468 247 NDGDEMGESSGAYIIRIPFGPR-----DKYIP-KEELWPYIPEFVDGALSHIVNMSKVLGEQIG-SGH--PVWPYVIHGH 317 (1050)
T ss_pred cccccccCCCCeEEEEeccCCC-----CCCcC-HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhc-ccc--CCCCCEEEEC
Confidence 0000012235777766654210 00111 011112233455555554321 10 000 1138999999
Q ss_pred CchhhHHHHHHHHHhhcCCCCCCCcEEEEEcCC
Q 011755 416 DWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNI 448 (478)
Q Consensus 416 DWhTALaPvyLK~~y~~~~~f~~iptVfTIHNL 448 (478)
+|++|++++.|+..+ ++|.|+|+|.|
T Consensus 318 yw~sG~aa~~L~~~l-------gVP~V~T~HSL 343 (1050)
T TIGR02468 318 YADAGDSAALLSGAL-------NVPMVLTGHSL 343 (1050)
T ss_pred cchHHHHHHHHHHhh-------CCCEEEECccc
Confidence 999999999998754 59999999987
No 16
>PRK10307 putative glycosyl transferase; Provisional
Probab=98.72 E-value=2.5e-07 Score=94.09 Aligned_cols=138 Identities=17% Similarity=0.099 Sum_probs=80.1
Q ss_pred ceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeC--CCCCCCCCCCcceEEEEeCCcceEEEEEEEEECCe
Q 011755 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH--YGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGV 355 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~--Yg~i~~~~~~~i~~~~~v~G~~~~v~V~~~~idGV 355 (478)
|||++|+..++|- .||.+.++..|.++|+++||+|+|++|. |+....... ..+ ..+.....+|+
T Consensus 1 mkIlii~~~~~P~--~~g~~~~~~~l~~~L~~~G~~V~vit~~~~~~~~~~~~~--------~~~----~~~~~~~~~~i 66 (412)
T PRK10307 1 MKILVYGINYAPE--LTGIGKYTGEMAEWLAARGHEVRVITAPPYYPQWRVGEG--------YSA----WRYRRESEGGV 66 (412)
T ss_pred CeEEEEecCCCCC--ccchhhhHHHHHHHHHHCCCeEEEEecCCCCCCCCCCcc--------ccc----ccceeeecCCe
Confidence 8999999999997 6999999999999999999999999965 332110000 000 01112335788
Q ss_pred eEEEccCccccccCCCcCCCCcccHHHHHHHHHHHHHHhcccCCCCCccCCCCCcEEEECCchh--hHHHHHHHHHhhcC
Q 011755 356 DFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHT--ALLPVYLKAYYRDN 433 (478)
Q Consensus 356 ~vyFId~p~fF~r~~~IYg~~~~Dn~~RFafFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhT--ALaPvyLK~~y~~~ 433 (478)
+++.+..... +......-..++..|....+..+.+.. -.+|||||+|.+.. +++..+++..
T Consensus 67 ~v~r~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~Div~~~~p~~~~~~~~~~~~~~---- 129 (412)
T PRK10307 67 TVWRCPLYVP-------KQPSGLKRLLHLGSFALSSFFPLLAQR------RWRPDRVIGVVPTLFCAPGARLLARL---- 129 (412)
T ss_pred EEEEccccCC-------CCccHHHHHHHHHHHHHHHHHHHhhcc------CCCCCEEEEeCCcHHHHHHHHHHHHh----
Confidence 8887642111 000000011122233333222221110 13689999998643 4444445432
Q ss_pred CCCCCCcEEEEEcCCC
Q 011755 434 GLMQYTRSLLVIHNIA 449 (478)
Q Consensus 434 ~~f~~iptVfTIHNLa 449 (478)
.++|+|+++|+..
T Consensus 130 ---~~~~~v~~~~d~~ 142 (412)
T PRK10307 130 ---SGARTWLHIQDYE 142 (412)
T ss_pred ---hCCCEEEEeccCC
Confidence 2579999999754
No 17
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.68 E-value=2.2e-07 Score=89.21 Aligned_cols=45 Identities=36% Similarity=0.461 Sum_probs=40.9
Q ss_pred ceEEEEecccCC--ccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCC
Q 011755 278 MNVILVAAECGP--WSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (478)
Q Consensus 278 MkIL~VSsE~aP--faKtGGLGDVVgsLPkALa~~GheV~VItP~Yg 322 (478)
|||++|+.++.| .-..||...++..|.++|+++||+|.|+++...
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~ 47 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDS 47 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCC
Confidence 899999999876 456899999999999999999999999998754
No 18
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.65 E-value=2.9e-07 Score=93.55 Aligned_cols=42 Identities=31% Similarity=0.536 Sum_probs=38.7
Q ss_pred eEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCC
Q 011755 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (478)
Q Consensus 279 kIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg 322 (478)
||++|+.=+.|. .||....+..|.++|+++||+|.|++|.++
T Consensus 1 kI~~v~~~~~p~--~GG~e~~~~~la~~L~~~G~~V~v~~~~~~ 42 (398)
T cd03796 1 RICMVSDFFYPN--LGGVETHIYQLSQCLIKRGHKVVVITHAYG 42 (398)
T ss_pred CeeEEeeccccc--cccHHHHHHHHHHHHHHcCCeeEEEeccCC
Confidence 799999888885 799999999999999999999999999764
No 19
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.60 E-value=4.3e-07 Score=90.06 Aligned_cols=117 Identities=18% Similarity=0.106 Sum_probs=71.3
Q ss_pred ceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCCCCcceEEEEeCCcceEEEEEEEEECCeeE
Q 011755 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDF 357 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~i~~~~~~~i~~~~~v~G~~~~v~V~~~~idGV~v 357 (478)
|||++|+..++|. +.||.+.++..|.++|+++ ++|.|++...+.. ..+|+++
T Consensus 1 mkI~~i~~~~~p~-~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~~~~--------------------------~~~~~~~ 52 (388)
T TIGR02149 1 MKVTVLTREYPPN-VYGGAGVHVEELTRELARL-MDVDVRCFGDQRF--------------------------DSEGLTV 52 (388)
T ss_pred CeeEEEecccCcc-ccccHhHHHHHHHHHHHHh-cCeeEEcCCCchh--------------------------cCCCeEE
Confidence 8999999987775 5799999999999999987 7888876532210 1123444
Q ss_pred EEccCccccccCCCcCCCCcccHHHHHHHHHHHHHHhcccCCCCCccCCCCCcEEEECCchhhHHHHHHHHHhhcCCCCC
Q 011755 358 VFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQ 437 (478)
Q Consensus 358 yFId~p~fF~r~~~IYg~~~~Dn~~RFafFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhTALaPvyLK~~y~~~~~f~ 437 (478)
+.+..+..+. . +... +..+...+. +... ..++||||+|+|.+++++.+++.. .
T Consensus 53 ~~~~~~~~~~------~--~~~~---~~~~~~~~~-~~~~--------~~~~divh~~~~~~~~~~~~~~~~-------~ 105 (388)
T TIGR02149 53 KGYRPWSELK------E--ANKA---LGTFSVDLA-MAND--------PVDADVVHSHTWYTFLAGHLAKKL-------Y 105 (388)
T ss_pred EEecChhhcc------c--hhhh---hhhhhHHHH-HhhC--------CCCCCeEeecchhhhhHHHHHHHh-------c
Confidence 3222111110 0 0000 111111111 1111 136899999999998877655432 3
Q ss_pred CCcEEEEEcCCC
Q 011755 438 YTRSLLVIHNIA 449 (478)
Q Consensus 438 ~iptVfTIHNLa 449 (478)
++|+|+|+|++.
T Consensus 106 ~~p~v~~~h~~~ 117 (388)
T TIGR02149 106 DKPLVVTAHSLE 117 (388)
T ss_pred CCCEEEEeeccc
Confidence 689999999975
No 20
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=98.59 E-value=6.6e-07 Score=93.52 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=42.1
Q ss_pred CCCceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCC
Q 011755 275 ANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (478)
Q Consensus 275 ~~~MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg 322 (478)
.++|||++++ |..|+..+||.+.++..|.++|+++||+|.|+++..+
T Consensus 56 ~~~mrI~~~~-~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~ 102 (465)
T PLN02871 56 SRPRRIALFV-EPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEG 102 (465)
T ss_pred CCCceEEEEE-CCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 6679999997 6678888999999999999999999999999998643
No 21
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=98.58 E-value=5.1e-07 Score=88.77 Aligned_cols=129 Identities=19% Similarity=0.246 Sum_probs=79.6
Q ss_pred eEEEEecccCCccc-----cCcHHHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCCCCcceEEEEeCCcceEEEEEEEEEC
Q 011755 279 NVILVAAECGPWSK-----TGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYID 353 (478)
Q Consensus 279 kIL~VSsE~aPfaK-----tGGLGDVVgsLPkALa~~GheV~VItP~Yg~i~~~~~~~i~~~~~v~G~~~~v~V~~~~id 353 (478)
||+|+..=.+|..+ .||.+.++..|.++|+++||+|.|+++........ . ....+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~-~-------------------~~~~~ 60 (398)
T cd03800 1 RIALISLHGSPLAQPGGADTGGQNVYVLELARALARLGHEVDIFTRRIDDALPP-I-------------------VELAP 60 (398)
T ss_pred CeEEEeccccccccCCCCCCCceeehHHHHHHHHhccCceEEEEEecCCcccCC-c-------------------ccccc
Confidence 46666655445443 67999999999999999999999999765421110 0 01224
Q ss_pred CeeEEEccCccc-cccCCCcCCCCcccHHHHHHHHHHHHHHhcccCCCCCccCCCCCcEEEECCchhhHHHHHHHHHhhc
Q 011755 354 GVDFVFLDSPLF-RHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRD 432 (478)
Q Consensus 354 GV~vyFId~p~f-F~r~~~IYg~~~~Dn~~RFafFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhTALaPvyLK~~y~~ 432 (478)
|+.++.+..... +......+ ..+..|.+++...+... ..+|||||+|+|.+++++..++..+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~-------~~~~Div~~~~~~~~~~~~~~~~~~-- 123 (398)
T cd03800 61 GVRVVRVPAGPAEYLPKEELW--------PYLDEFADDLLRFLRRE-------GGRPDLIHAHYWDSGLVALLLARRL-- 123 (398)
T ss_pred ceEEEecccccccCCChhhcc--------hhHHHHHHHHHHHHHhc-------CCCccEEEEecCccchHHHHHHhhc--
Confidence 555555443211 10000011 11223455555555431 1268999999999999888776543
Q ss_pred CCCCCCCcEEEEEcCCC
Q 011755 433 NGLMQYTRSLLVIHNIA 449 (478)
Q Consensus 433 ~~~f~~iptVfTIHNLa 449 (478)
++|+|+|+|.+.
T Consensus 124 -----~~~~i~~~h~~~ 135 (398)
T cd03800 124 -----GIPLVHTFHSLG 135 (398)
T ss_pred -----CCceEEEeeccc
Confidence 589999999875
No 22
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.54 E-value=6.3e-07 Score=87.74 Aligned_cols=122 Identities=20% Similarity=0.185 Sum_probs=72.1
Q ss_pred ceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCCCCcceEEEEeCCcceEEEEEEEEECCeeE
Q 011755 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDF 357 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~i~~~~~~~i~~~~~v~G~~~~v~V~~~~idGV~v 357 (478)
|||++++ .|. .||.+.++..|.++|+++||+|.|++...+..... ...++.+
T Consensus 1 mki~~~~---~p~--~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~~-----------------------~~~~~~~ 52 (371)
T cd04962 1 MKIGIVC---YPT--YGGSGVVATELGKALARRGHEVHFITSSRPFRLDE-----------------------YSPNIFF 52 (371)
T ss_pred CceeEEE---EeC--CCCccchHHHHHHHHHhcCCceEEEecCCCcchhh-----------------------hccCeEE
Confidence 8999997 354 69999999999999999999999998753211000 0112222
Q ss_pred EEccCccccccCCCcCCCCcccHHHHHHHHHHHHHHhcccCCCCCccCCCCCcEEEECCchhhHHHHHHHHHhhcCCCCC
Q 011755 358 VFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQ 437 (478)
Q Consensus 358 yFId~p~fF~r~~~IYg~~~~Dn~~RFafFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhTALaPvyLK~~y~~~~~f~ 437 (478)
+.++.+.+....... + ...+.+.+..++.+ .+|||||+|.|....++.++...... ..
T Consensus 53 ~~~~~~~~~~~~~~~----~------~~~~~~~l~~~i~~---------~~~divh~~~~~~~~~~~~~~~~~~~---~~ 110 (371)
T cd04962 53 HEVEVPQYPLFQYPP----Y------DLALASKIAEVAKR---------YKLDLLHVHYAVPHAVAAYLAREILG---KK 110 (371)
T ss_pred EEecccccchhhcch----h------HHHHHHHHHHHHhc---------CCccEEeecccCCccHHHHHHHHhcC---cC
Confidence 211111110000000 1 01233445555543 36899999999876665555433221 12
Q ss_pred CCcEEEEEcCCC
Q 011755 438 YTRSLLVIHNIA 449 (478)
Q Consensus 438 ~iptVfTIHNLa 449 (478)
++|+|+|+|+..
T Consensus 111 ~~~~i~~~h~~~ 122 (371)
T cd04962 111 DLPVVTTLHGTD 122 (371)
T ss_pred CCcEEEEEcCCc
Confidence 689999999764
No 23
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.50 E-value=8e-07 Score=100.35 Aligned_cols=143 Identities=15% Similarity=0.044 Sum_probs=83.1
Q ss_pred ceEEEEecccC---Cccc----cCcHHHHHhHHHHHH--------HHCCC----eEEEEeeCCCCCCCCCCCcceEEEEe
Q 011755 278 MNVILVAAECG---PWSK----TGGLGDVAGALPKAL--------ARRGH----RVMVVAPHYGNYAEPQDTGIRKRYRV 338 (478)
Q Consensus 278 MkIL~VSsE~a---PfaK----tGGLGDVVgsLPkAL--------a~~Gh----eV~VItP~Yg~i~~~~~~~i~~~~~v 338 (478)
|||+|||++.. |-.- |||...+|..|++|| +++|| +|.|+|..-+..... .-..+.. .+
T Consensus 256 ~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~-~~~~~~e-~~ 333 (784)
T TIGR02470 256 FNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGT-TCNQRLE-KV 333 (784)
T ss_pred ceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCcccc-ccccccc-cc
Confidence 99999999973 2233 899999999999985 68999 777999876422110 0000000 00
Q ss_pred CCcceEEEEEEEEECCeeEEEccCcc--ccccCCCcCCCCcccHHHHHHHHHHHHHHhcccCCCCCccCCCCCcEEEECC
Q 011755 339 DRQDIEVAYFQAYIDGVDFVFLDSPL--FRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIAND 416 (478)
Q Consensus 339 ~G~~~~v~V~~~~idGV~vyFId~p~--fF~r~~~IYg~~~~Dn~~RFafFskAaLEll~~~~~g~~~~g~~PDIIHaHD 416 (478)
. ..+|+.++.|.... ....+ -|=. ..+-..-.--|+..++..+... .+.+|||||+|.
T Consensus 334 ~-----------~~~~~~I~rvp~g~~~~~~~~--~~i~-k~~l~p~l~~f~~~~~~~~~~~------~~~~pDlIHahy 393 (784)
T TIGR02470 334 Y-----------GTEHAWILRVPFRTENGIILR--NWIS-RFEIWPYLETFAEDAEKEILAE------LQGKPDLIIGNY 393 (784)
T ss_pred c-----------CCCceEEEEecCCCCcccccc--cccC-HHHHHHHHHHHHHHHHHHHHHh------cCCCCCEEEECC
Confidence 1 11344444332111 00000 0000 0111112234566666544321 013689999999
Q ss_pred chhhHHHHHHHHHhhcCCCCCCCcEEEEEcCCC
Q 011755 417 WHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIA 449 (478)
Q Consensus 417 WhTALaPvyLK~~y~~~~~f~~iptVfTIHNLa 449 (478)
|.+++++..|+... ++|.|+|.|.++
T Consensus 394 ~d~glva~lla~~l-------gVP~v~t~HsL~ 419 (784)
T TIGR02470 394 SDGNLVASLLARKL-------GVTQCTIAHALE 419 (784)
T ss_pred CchHHHHHHHHHhc-------CCCEEEECCcch
Confidence 99999999988754 599999999874
No 24
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=98.40 E-value=7.4e-07 Score=97.65 Aligned_cols=156 Identities=17% Similarity=0.152 Sum_probs=91.3
Q ss_pred EEecccCCccccCcHHHHHhHHHHHHHH-CCCeEEEEeeCCCCCC--CCCCCc-----ceEEE-EeCCcceEEEEEEEEE
Q 011755 282 LVAAECGPWSKTGGLGDVAGALPKALAR-RGHRVMVVAPHYGNYA--EPQDTG-----IRKRY-RVDRQDIEVAYFQAYI 352 (478)
Q Consensus 282 ~VSsE~aPfaKtGGLGDVVgsLPkALa~-~GheV~VItP~Yg~i~--~~~~~~-----i~~~~-~v~G~~~~v~V~~~~i 352 (478)
=+|||+.- ||||+=.|+.+=++.+++ .|-+..+|=|.+..-. +-.... +.... .+......+.+-+=-+
T Consensus 6 E~swEV~N--KVGGIyTVi~tka~~~~~~~~d~y~~iGP~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~g~~v~~GrW~i 83 (590)
T cd03793 6 EVAWEVAN--KVGGIYTVIKSKAPVTVEEWGDRYCLIGPYNEAKARTEVEILEPPNPALRQALDRMRSRGIKVHFGRWLI 83 (590)
T ss_pred EEeehhhc--cCCCeeeeeecCcHHHHHHhCCeEEEECCCCccccCCccccCCCCchHHHHHHHHHHhCCCeEEEeEEEc
Confidence 48999765 799999999998888866 4889999999876321 100000 00000 0111112232222245
Q ss_pred CCe-eEEEccCccccccCCCcCC-------------CCcccHHHHHHHHHHHHHHhcccCCCCCccCCCCCcEEEECCch
Q 011755 353 DGV-DFVFLDSPLFRHLGNNIYG-------------GGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWH 418 (478)
Q Consensus 353 dGV-~vyFId~p~fF~r~~~IYg-------------~~~~Dn~~RFafFskAaLEll~~~~~g~~~~g~~PDIIHaHDWh 418 (478)
+|- .++++|-..++...+.+|+ +...++ .++|+.|+..++...-.. .. ..++||+|+|||+
T Consensus 84 ~G~P~viL~D~~~~~~~~~~~~~~lW~~~~i~s~~~~~d~ne---a~~fgy~~~~~i~~~~~~-~~-~~~~dViH~HeWm 158 (590)
T cd03793 84 EGYPKVVLFDIGSAAWKLDEWKGELWELCGIGSPEGDRETND---AIIFGFLVAWFLGEFAEQ-FD-DEPAVVAHFHEWQ 158 (590)
T ss_pred CCCCeEEEEeCchhhhhHHHHHHHHHHHcCCCCCCCCCcchH---HHHHHHHHHHHHHHHHhh-cc-CCCCeEEEEcchh
Confidence 664 3556677666543333332 111233 345666666544221000 00 1468999999999
Q ss_pred hhHHHHHHHHHhhcCCCCCCCcEEEEEcCCCC
Q 011755 419 TALLPVYLKAYYRDNGLMQYTRSLLVIHNIAH 450 (478)
Q Consensus 419 TALaPvyLK~~y~~~~~f~~iptVfTIHNLay 450 (478)
|+++.++||... ..+|+|||+|.+.+
T Consensus 159 ~g~a~~~lK~~~------~~VptVfTtHAT~~ 184 (590)
T cd03793 159 AGVGLPLLRKRK------VDVSTIFTTHATLL 184 (590)
T ss_pred HhHHHHHHHHhC------CCCCEEEEeccccc
Confidence 999999999621 36899999998874
No 25
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=98.36 E-value=7.9e-06 Score=77.43 Aligned_cols=132 Identities=19% Similarity=0.213 Sum_probs=77.3
Q ss_pred eEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCCCCcceEEEEeCCcceEEEEEEEEECCeeEE
Q 011755 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFV 358 (478)
Q Consensus 279 kIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~i~~~~~~~i~~~~~v~G~~~~v~V~~~~idGV~vy 358 (478)
|||+|+.-+.|.. ||.+.++..|.++|+++||+|.|+++........... .......+|++++
T Consensus 1 kIl~i~~~~~~~~--~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~ 63 (394)
T cd03794 1 KILILSQYFPPEL--GGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYK---------------GYKREEVDGVRVH 63 (394)
T ss_pred CEEEEecccCCcc--CCcceeHHHHHHHHHhCCceEEEEecCCCcccccccc---------------cceEEecCCeEEE
Confidence 7999999888765 9999999999999999999999999876432211000 0111234567766
Q ss_pred EccCccccccCCCcCCCCcccHHHHHHHHHHHHHHhcccCCCCCccCCCCCcEEEECCc-hhhHHH-HHHHHHhhcCCCC
Q 011755 359 FLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDW-HTALLP-VYLKAYYRDNGLM 436 (478)
Q Consensus 359 FId~p~fF~r~~~IYg~~~~Dn~~RFafFskAaLEll~~~~~g~~~~g~~PDIIHaHDW-hTALaP-vyLK~~y~~~~~f 436 (478)
.+....... ...+ ....++..|.......+... ..+||+||+|.| ....++ .+++..
T Consensus 64 ~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~-------~~~~D~v~~~~~~~~~~~~~~~~~~~------- 122 (394)
T cd03794 64 RVPLPPYKK--NGLL-----KRLLNYLSFALSALLALLKR-------RRRPDVIIATSPPLLIALAALLLARL------- 122 (394)
T ss_pred EEecCCCCc--cchH-----HHHHhhhHHHHHHHHHHHhc-------ccCCCEEEEcCChHHHHHHHHHHHHh-------
Confidence 554432211 1111 11122333333333333210 147899999973 333333 333321
Q ss_pred CCCcEEEEEcCC
Q 011755 437 QYTRSLLVIHNI 448 (478)
Q Consensus 437 ~~iptVfTIHNL 448 (478)
.++|+|+++|++
T Consensus 123 ~~~~~i~~~h~~ 134 (394)
T cd03794 123 KGAPFVLEVRDL 134 (394)
T ss_pred cCCCEEEEehhh
Confidence 258999999986
No 26
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=98.29 E-value=8.5e-06 Score=70.51 Aligned_cols=103 Identities=21% Similarity=0.239 Sum_probs=60.1
Q ss_pred ccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCCCCcceEEEEeCCcceEEEEEEEEECCeeEEEccCccccccCCC
Q 011755 292 KTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNN 371 (478)
Q Consensus 292 KtGGLGDVVgsLPkALa~~GheV~VItP~Yg~i~~~~~~~i~~~~~v~G~~~~v~V~~~~idGV~vyFId~p~fF~r~~~ 371 (478)
..||.+.++..|.++|+++||+|+|++|..+...... . + ..+...+...
T Consensus 10 ~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~---~----------------------~-~~~~~~~~~~----- 58 (177)
T PF13439_consen 10 NIGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEE---L----------------------V-KIFVKIPYPI----- 58 (177)
T ss_dssp SSSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SST---E----------------------E-EE---TT-SS-----
T ss_pred CCChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhh---c----------------------c-ceeeeeeccc-----
Confidence 4899999999999999999999999999876433210 0 0 0011111000
Q ss_pred cCCCCcccHHHHHHHHHHHHHHhcccCCCCCccCCCCCcEEEECCchhhHHHHHHHHHhhcCCCCCCCcEEEEEcCCC
Q 011755 372 IYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIA 449 (478)
Q Consensus 372 IYg~~~~Dn~~RFafFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhTALaPvyLK~~y~~~~~f~~iptVfTIHNLa 449 (478)
. ....+...+.+.+..++.+ .+|||||+|.+.+..+...... ++|+|+|+|+..
T Consensus 59 --~----~~~~~~~~~~~~~~~~i~~---------~~~DiVh~~~~~~~~~~~~~~~---------~~~~v~~~H~~~ 112 (177)
T PF13439_consen 59 --R----KRFLRSFFFMRRLRRLIKK---------EKPDIVHIHGPPAFWIALLACR---------KVPIVYTIHGPY 112 (177)
T ss_dssp --T----SS--HHHHHHHHHHHHHHH---------HT-SEEECCTTHCCCHHHHHHH---------CSCEEEEE-HHH
T ss_pred --c----cccchhHHHHHHHHHHHHH---------cCCCeEEecccchhHHHHHhcc---------CCCEEEEeCCCc
Confidence 0 0111222344555555544 2689999999998665433221 489999999976
No 27
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=98.26 E-value=1.1e-05 Score=69.61 Aligned_cols=109 Identities=17% Similarity=0.248 Sum_probs=68.1
Q ss_pred eEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCCCCcceEEEEeCCcceEEEEEEEEECCeeEE
Q 011755 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFV 358 (478)
Q Consensus 279 kIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~i~~~~~~~i~~~~~v~G~~~~v~V~~~~idGV~vy 358 (478)
|||+|+....+ ++..+.++|+++|++|.|+++..+. ... ...+|+.++
T Consensus 1 KIl~i~~~~~~---------~~~~~~~~L~~~g~~V~ii~~~~~~-~~~----------------------~~~~~i~~~ 48 (139)
T PF13477_consen 1 KILLIGNTPST---------FIYNLAKELKKRGYDVHIITPRNDY-EKY----------------------EIIEGIKVI 48 (139)
T ss_pred CEEEEecCcHH---------HHHHHHHHHHHCCCEEEEEEcCCCc-hhh----------------------hHhCCeEEE
Confidence 68888886533 5779999999999999999995442 110 112455555
Q ss_pred EccCccccccCCCcCCCCcccHHHHHHHHHHHHHHhcccCCCCCccCCCCCcEEEECCchh-hHHHHHHHHHhhcCCCCC
Q 011755 359 FLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHT-ALLPVYLKAYYRDNGLMQ 437 (478)
Q Consensus 359 FId~p~fF~r~~~IYg~~~~Dn~~RFafFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhT-ALaPvyLK~~y~~~~~f~ 437 (478)
-+..+ +.. + . ..+.++ ....++.+ .+|||||||...+ ++++.+++... .
T Consensus 49 ~~~~~----~k~-~----~----~~~~~~--~l~k~ik~---------~~~DvIh~h~~~~~~~~~~l~~~~~------~ 98 (139)
T PF13477_consen 49 RLPSP----RKS-P----L----NYIKYF--RLRKIIKK---------EKPDVIHCHTPSPYGLFAMLAKKLL------K 98 (139)
T ss_pred EecCC----CCc-c----H----HHHHHH--HHHHHhcc---------CCCCEEEEecCChHHHHHHHHHHHc------C
Confidence 55322 111 0 1 011111 22333433 3799999999887 78777765432 2
Q ss_pred CCcEEEEEcCCC
Q 011755 438 YTRSLLVIHNIA 449 (478)
Q Consensus 438 ~iptVfTIHNLa 449 (478)
.+|+|+|+|+..
T Consensus 99 ~~~~i~~~hg~~ 110 (139)
T PF13477_consen 99 NKKVIYTVHGSD 110 (139)
T ss_pred CCCEEEEecCCe
Confidence 489999999864
No 28
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.23 E-value=7e-06 Score=81.62 Aligned_cols=41 Identities=24% Similarity=0.398 Sum_probs=36.5
Q ss_pred ceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCC
Q 011755 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg 322 (478)
||||++.+. ...||...++..|.++|+++||+|+|+++.++
T Consensus 1 mkIl~~~~~----~~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~ 41 (392)
T cd03805 1 LRVAFIHPD----LGIGGAERLVVDAALALQSRGHEVTIYTSHHD 41 (392)
T ss_pred CeEEEECCC----CCCchHHHHHHHHHHHHHhCCCeEEEEcCCCC
Confidence 899999644 45899999999999999999999999998654
No 29
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.20 E-value=1.3e-05 Score=77.36 Aligned_cols=118 Identities=15% Similarity=0.139 Sum_probs=72.6
Q ss_pred eEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCCCCcceEEEEeCCcceEEEEEEEEECCeeEE
Q 011755 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFV 358 (478)
Q Consensus 279 kIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~i~~~~~~~i~~~~~v~G~~~~v~V~~~~idGV~vy 358 (478)
|||+++... +.||...++.+|.++|+++||+|.|+.+.-+..... .. .+..+.
T Consensus 1 ~il~~~~~~----~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~----------~~-------------~~~~~~ 53 (360)
T cd04951 1 KILYVITGL----GLGGAEKQVVDLADQFVAKGHQVAIISLTGESEVKP----------PI-------------DATIIL 53 (360)
T ss_pred CeEEEecCC----CCCCHHHHHHHHHHhcccCCceEEEEEEeCCCCccc----------hh-------------hccceE
Confidence 588887663 589999999999999999999999998643211100 00 000000
Q ss_pred EccCccccccCCCcCCCCcccHHHHHHHHHHHHHHhcccCCCCCccCCCCCcEEEECCchhhHHHHHHHHHhhcCCCCCC
Q 011755 359 FLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQY 438 (478)
Q Consensus 359 FId~p~fF~r~~~IYg~~~~Dn~~RFafFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhTALaPvyLK~~y~~~~~f~~ 438 (478)
.+.-. ... .++.....++..++++ ++|||||+|.++++++..+++..+ ..
T Consensus 54 ~~~~~------~~~---------~~~~~~~~~~~~~~~~---------~~pdiv~~~~~~~~~~~~l~~~~~------~~ 103 (360)
T cd04951 54 NLNMS------KNP---------LSFLLALWKLRKILRQ---------FKPDVVHAHMFHANIFARLLRLFL------PS 103 (360)
T ss_pred Eeccc------ccc---------hhhHHHHHHHHHHHHh---------cCCCEEEEcccchHHHHHHHHhhC------CC
Confidence 00000 000 0111111223333433 478999999999998877776542 46
Q ss_pred CcEEEEEcCCCCccc
Q 011755 439 TRSLLVIHNIAHQIC 453 (478)
Q Consensus 439 iptVfTIHNLayQG~ 453 (478)
+++|+|.|+...++.
T Consensus 104 ~~~v~~~h~~~~~~~ 118 (360)
T cd04951 104 PPLICTAHSKNEGGR 118 (360)
T ss_pred CcEEEEeeccCchhH
Confidence 899999999865553
No 30
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=98.17 E-value=2.7e-05 Score=72.54 Aligned_cols=43 Identities=40% Similarity=0.600 Sum_probs=39.5
Q ss_pred eEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCC
Q 011755 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN 323 (478)
Q Consensus 279 kIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~ 323 (478)
||++++..+.|. .||.+.++..|.++|++.||+|.|+++....
T Consensus 1 kI~ii~~~~~~~--~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~ 43 (374)
T cd03801 1 KILLVTPEYPPS--VGGAERHVLELARALAARGHEVTVLTPGDGG 43 (374)
T ss_pred CeeEEecccCCc--cCcHhHHHHHHHHHHHhcCceEEEEecCCCC
Confidence 799999998886 8999999999999999999999999997653
No 31
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=98.16 E-value=1.6e-05 Score=79.21 Aligned_cols=120 Identities=22% Similarity=0.113 Sum_probs=72.2
Q ss_pred ceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCCCCcceEEEEeCCcceEEEEEEEEECCeeE
Q 011755 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDF 357 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~i~~~~~~~i~~~~~v~G~~~~v~V~~~~idGV~v 357 (478)
|||++++.+ +||--.++..|.++|+++||+|.|++..++..... ....|+++
T Consensus 2 ~~i~i~~~g------~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~----------------------~~~~g~~~ 53 (357)
T PRK00726 2 KKILLAGGG------TGGHVFPALALAEELKKRGWEVLYLGTARGMEARL----------------------VPKAGIEF 53 (357)
T ss_pred cEEEEEcCc------chHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhc----------------------cccCCCcE
Confidence 899998876 46655567799999999999999998754211000 01136666
Q ss_pred EEccCccccccCCCcCCCCcccHHHHHHHHHHH---HHHhcccCCCCCccCCCCCcEEEECCchhhHHHHHHHHHhhcCC
Q 011755 358 VFLDSPLFRHLGNNIYGGGREDILKRMVLFCKA---AIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNG 434 (478)
Q Consensus 358 yFId~p~fF~r~~~IYg~~~~Dn~~RFafFskA---aLEll~~~~~g~~~~g~~PDIIHaHDWhTALaPvyLK~~y~~~~ 434 (478)
+.+..+.+. +.+......++.-|.++ +..++++ .+|||||||.|.+++.+.+++..
T Consensus 54 ~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~~~ik~---------~~pDvv~~~~~~~~~~~~~~~~~----- 112 (357)
T PRK00726 54 HFIPSGGLR-------RKGSLANLKAPFKLLKGVLQARKILKR---------FKPDVVVGFGGYVSGPGGLAARL----- 112 (357)
T ss_pred EEEeccCcC-------CCChHHHHHHHHHHHHHHHHHHHHHHh---------cCCCEEEECCCcchhHHHHHHHH-----
Confidence 666543321 11100111112222222 3333432 36999999999998776654432
Q ss_pred CCCCCcEEEEEcCC
Q 011755 435 LMQYTRSLLVIHNI 448 (478)
Q Consensus 435 ~f~~iptVfTIHNL 448 (478)
.++|+|++.|+.
T Consensus 113 --~~~p~v~~~~~~ 124 (357)
T PRK00726 113 --LGIPLVIHEQNA 124 (357)
T ss_pred --cCCCEEEEcCCC
Confidence 358999988864
No 32
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.11 E-value=9.7e-06 Score=78.46 Aligned_cols=39 Identities=23% Similarity=0.322 Sum_probs=34.1
Q ss_pred ceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeC
Q 011755 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~ 320 (478)
||||+++.- + ..||.+.++..|.++|+++||+|.|+++.
T Consensus 1 MkIl~~~~~--~--~~gG~~~~~~~l~~~l~~~G~~v~v~~~~ 39 (365)
T cd03825 1 MKVLHLNTS--D--ISGGAARAAYRLHRALQAAGVDSTMLVQE 39 (365)
T ss_pred CeEEEEecC--C--CCCcHHHHHHHHHHHHHhcCCceeEEEee
Confidence 899999753 2 35999999999999999999999999753
No 33
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=98.06 E-value=4.3e-05 Score=72.55 Aligned_cols=44 Identities=36% Similarity=0.490 Sum_probs=39.2
Q ss_pred eEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCC
Q 011755 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN 323 (478)
Q Consensus 279 kIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~ 323 (478)
|||+++.-+.|.. .||...++..|.++|+++||+|.|+.+....
T Consensus 1 kIl~i~~~~~~~~-~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 44 (359)
T cd03823 1 RILVVNHLYPPRS-VGGAEVVAHDLAEALAKRGHEVAVLTAGEDP 44 (359)
T ss_pred CeeEEcccCCccc-ccchHHHHHHHHHHHHhcCCceEEEeCCCCC
Confidence 6999999977755 8999999999999999999999999987543
No 34
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.03 E-value=8e-05 Score=72.25 Aligned_cols=42 Identities=24% Similarity=0.364 Sum_probs=37.4
Q ss_pred eEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCC
Q 011755 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHY 321 (478)
Q Consensus 279 kIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Y 321 (478)
||++++++.+|-. .||.+.++..|.++|+++||+|.|+++.-
T Consensus 1 ~i~~i~~~~~~~~-~gG~~~~~~~la~~L~~~g~~v~v~~~~~ 42 (363)
T cd04955 1 KIAIIGTRGIPAK-YGGFETFVEELAPRLVARGHEVTVYCRSP 42 (363)
T ss_pred CeEEEecCcCCcc-cCcHHHHHHHHHHHHHhcCCCEEEEEccC
Confidence 6899998876643 79999999999999999999999999864
No 35
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=98.01 E-value=5e-05 Score=72.09 Aligned_cols=44 Identities=30% Similarity=0.474 Sum_probs=39.8
Q ss_pred eEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCCC
Q 011755 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNY 324 (478)
Q Consensus 279 kIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~i 324 (478)
|||+++..+.|. .||.+..+..|.++|+++||+|.|+++.+...
T Consensus 1 kil~~~~~~~p~--~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~ 44 (374)
T cd03817 1 KIGIFTDTYLPQ--VNGVATSIRRLAEELEKRGHEVYVVAPSYPGA 44 (374)
T ss_pred CeeEeehhccCC--CCCeehHHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 799999998885 79999999999999999999999999987643
No 36
>PLN00142 sucrose synthase
Probab=98.00 E-value=2.3e-05 Score=89.05 Aligned_cols=35 Identities=14% Similarity=0.076 Sum_probs=32.0
Q ss_pred CCcEEEECCchhhHHHHHHHHHhhcCCCCCCCcEEEEEcCCC
Q 011755 408 GNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIA 449 (478)
Q Consensus 408 ~PDIIHaHDWhTALaPvyLK~~y~~~~~f~~iptVfTIHNLa 449 (478)
.|||||+|+|.+++++..|+..+ ++|.|+|.|.|+
T Consensus 408 ~PDlIHaHYwdsg~vA~~La~~l-------gVP~v~T~HsL~ 442 (815)
T PLN00142 408 KPDLIIGNYSDGNLVASLLAHKL-------GVTQCTIAHALE 442 (815)
T ss_pred CCCEEEECCccHHHHHHHHHHHh-------CCCEEEEcccch
Confidence 68999999999999999999865 599999999885
No 37
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=97.96 E-value=5.3e-05 Score=71.48 Aligned_cols=117 Identities=15% Similarity=-0.020 Sum_probs=74.6
Q ss_pred eEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCCCCcceEEEEeCCcceEEEEEEEEECCeeEE
Q 011755 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFV 358 (478)
Q Consensus 279 kIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~i~~~~~~~i~~~~~v~G~~~~v~V~~~~idGV~vy 358 (478)
||++|...+.+ ||.+.++..|.++|++.|++|.|++..-...... . ....|++++
T Consensus 1 ~i~~i~~~~~~----gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~-~--------------------~~~~~i~v~ 55 (365)
T cd03807 1 KVLHVITGLDV----GGAERMLVRLLKGLDRDRFEHVVISLTDRGELGE-E--------------------LEEAGVPVY 55 (365)
T ss_pred CeEEEEeeccC----ccHHHHHHHHHHHhhhccceEEEEecCcchhhhH-H--------------------HHhcCCeEE
Confidence 68999988766 9999999999999999999999998643211100 0 001355555
Q ss_pred EccCccccccCCCcCCCCcccHHHHHHHHHHHHHHhcccCCCCCccCCCCCcEEEECCchhhHHHHHHHHHhhcCCCCCC
Q 011755 359 FLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQY 438 (478)
Q Consensus 359 FId~p~fF~r~~~IYg~~~~Dn~~RFafFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhTALaPvyLK~~y~~~~~f~~ 438 (478)
.+..+... . . . .+......++++ .+||+||+|++++.+....++... .+
T Consensus 56 ~~~~~~~~------~---~---~----~~~~~~~~~~~~---------~~~div~~~~~~~~~~~~~~~~~~------~~ 104 (365)
T cd03807 56 CLGKRPGR------P---D---P----GALLRLYKLIRR---------LRPDVVHTWMYHADLYGGLAARLA------GV 104 (365)
T ss_pred EEeccccc------c---c---H----HHHHHHHHHHHh---------hCCCEEEeccccccHHHHHHHHhc------CC
Confidence 44332110 0 0 0 111122233332 368999999999888776665421 35
Q ss_pred CcEEEEEcCCCCc
Q 011755 439 TRSLLVIHNIAHQ 451 (478)
Q Consensus 439 iptVfTIHNLayQ 451 (478)
++.|+++|+..+.
T Consensus 105 ~~~i~~~~~~~~~ 117 (365)
T cd03807 105 PPVIWGIRHSDLD 117 (365)
T ss_pred CcEEEEecCCccc
Confidence 8999999997644
No 38
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=97.94 E-value=8.7e-05 Score=73.00 Aligned_cols=120 Identities=19% Similarity=0.106 Sum_probs=66.7
Q ss_pred ceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCCCCcceEEEEeCCcceEEEEEEEEECCeeE
Q 011755 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDF 357 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~i~~~~~~~i~~~~~v~G~~~~v~V~~~~idGV~v 357 (478)
|||++++.| +||=-.++..|.++|.++||+|.|+++.++.... + ....|+++
T Consensus 1 ~~i~~~~g~------~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~--------------------~--~~~~g~~~ 52 (348)
T TIGR01133 1 KKVVLAAGG------TGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKR--------------------L--VPKAGIEF 52 (348)
T ss_pred CeEEEEeCc------cHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhc--------------------c--cccCCCce
Confidence 789988877 3433334568999999999999999864431100 0 01136666
Q ss_pred EEccCccccccCCCcCCCCcccHHHHHHHHHH---HHHHhcccCCCCCccCCCCCcEEEECCchhhHHHHHHHHHhhcCC
Q 011755 358 VFLDSPLFRHLGNNIYGGGREDILKRMVLFCK---AAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNG 434 (478)
Q Consensus 358 yFId~p~fF~r~~~IYg~~~~Dn~~RFafFsk---AaLEll~~~~~g~~~~g~~PDIIHaHDWhTALaPvyLK~~y~~~~ 434 (478)
+.+....++. .+++ ....++..+-+ .+..++++ .+|||||+|.|.++++...++..
T Consensus 53 ~~i~~~~~~~--~~~~-----~~l~~~~~~~~~~~~l~~~i~~---------~~pDvVi~~~~~~~~~~~~~~~~----- 111 (348)
T TIGR01133 53 YFIPVGGLRR--KGSF-----RLIKTPLKLLKAVFQARRILKK---------FKPDAVIGFGGYVSGPAGLAAKL----- 111 (348)
T ss_pred EEEeccCcCC--CChH-----HHHHHHHHHHHHHHHHHHHHHh---------cCCCEEEEcCCcccHHHHHHHHH-----
Confidence 6654333221 1111 11111111222 23333433 47999999998877665544432
Q ss_pred CCCCCcEEEEEcCC
Q 011755 435 LMQYTRSLLVIHNI 448 (478)
Q Consensus 435 ~f~~iptVfTIHNL 448 (478)
.++|+|++.|+.
T Consensus 112 --~~~p~v~~~~~~ 123 (348)
T TIGR01133 112 --LGIPLFHHEQNA 123 (348)
T ss_pred --cCCCEEEECCCC
Confidence 247888665553
No 39
>PLN02846 digalactosyldiacylglycerol synthase
Probab=97.93 E-value=4.1e-05 Score=82.19 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=43.1
Q ss_pred CCCceEEEEecccCCccccCcHHHHHhHHHHHHHHCC-CeEEEEeeCCCC
Q 011755 275 ANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRG-HRVMVVAPHYGN 323 (478)
Q Consensus 275 ~~~MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~G-heV~VItP~Yg~ 323 (478)
.+.|||++||-=+.|+ ++|.+..+.-+...|+++| |+|.||.|+|+.
T Consensus 2 ~~~mrIaivTdt~lP~--vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~ 49 (462)
T PLN02846 2 QKKQHIAIFTTASLPW--MTGTAVNPLFRAAYLAKDGDREVTLVIPWLSL 49 (462)
T ss_pred CCCCEEEEEEcCCCCC--CCCeeccHHHHHHHHHhcCCcEEEEEecCCcc
Confidence 3569999999999999 6999999999999999999 899999999963
No 40
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.80 E-value=0.00012 Score=65.28 Aligned_cols=37 Identities=51% Similarity=0.640 Sum_probs=31.8
Q ss_pred EEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEe
Q 011755 280 VILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (478)
Q Consensus 280 IL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VIt 318 (478)
|++++....| ..||.+.++..|.++|+++|++|.|+.
T Consensus 1 i~~i~~~~~~--~~~G~~~~~~~l~~~L~~~g~~v~v~~ 37 (229)
T cd01635 1 ILLVSTPLLP--GGGGVELVLLDLAKALARRGHEVEVVA 37 (229)
T ss_pred CeeeccccCC--CCCCchhHHHHHHHHHHHcCCeEEEEE
Confidence 5667766555 579999999999999999999999986
No 41
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=97.73 E-value=0.00025 Score=67.19 Aligned_cols=42 Identities=38% Similarity=0.508 Sum_probs=37.7
Q ss_pred eEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCC
Q 011755 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (478)
Q Consensus 279 kIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg 322 (478)
|||+|+..+.| ..||.+.++..|.++|+++||+|.|+++...
T Consensus 1 kIl~i~~~~~~--~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (375)
T cd03821 1 KILHVIPSFDP--KYGGPVRVVLNLSKALAKLGHEVTVATTDAG 42 (375)
T ss_pred CeEEEcCCCCc--ccCCeehHHHHHHHHHHhcCCcEEEEecCCC
Confidence 79999988764 4899999999999999999999999998754
No 42
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=97.72 E-value=0.00017 Score=69.97 Aligned_cols=108 Identities=18% Similarity=0.139 Sum_probs=64.2
Q ss_pred CccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCCCCcceEEEEeCCcceEEEEEEEEECCeeEEEccCcccccc
Q 011755 289 PWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLFRHL 368 (478)
Q Consensus 289 PfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~i~~~~~~~i~~~~~v~G~~~~v~V~~~~idGV~vyFId~p~fF~r 368 (478)
|-...||...++..|.++|+++||+|.|+++.... ... ....|++++.+.. ..
T Consensus 5 ~~~~~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~-~~~----------------------~~~~~~~~~~~~~---~~- 57 (355)
T cd03819 5 PALESGGVERGTLELARALVERGHRSLVASAGGRL-VAE----------------------LEAEGSRHIKLPF---IS- 57 (355)
T ss_pred hhhccCcHHHHHHHHHHHHHHcCCEEEEEcCCCch-HHH----------------------HHhcCCeEEEccc---cc-
Confidence 44456999999999999999999999999874221 100 0011333332211 10
Q ss_pred CCCcCCCCcccHHHHHHHHHHHHHHhcccCCCCCccCCCCCcEEEECCchhhHHHHHHHHHhhcCCCCCCCcEEEEEcCC
Q 011755 369 GNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNI 448 (478)
Q Consensus 369 ~~~IYg~~~~Dn~~RFafFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhTALaPvyLK~~y~~~~~f~~iptVfTIHNL 448 (478)
..++ +...+.+....++++ .+|||||+|.+..+++..++... .++|+|+++|..
T Consensus 58 -~~~~---------~~~~~~~~l~~~~~~---------~~~dii~~~~~~~~~~~~~~~~~-------~~~~~i~~~h~~ 111 (355)
T cd03819 58 -KNPL---------RILLNVARLRRLIRE---------EKVDIVHARSRAPAWSAYLAARR-------TRPPFVTTVHGF 111 (355)
T ss_pred -cchh---------hhHHHHHHHHHHHHH---------cCCCEEEECCCchhHHHHHHHHh-------cCCCEEEEeCCc
Confidence 0111 111111223333433 36899999999887766555432 268999999976
Q ss_pred C
Q 011755 449 A 449 (478)
Q Consensus 449 a 449 (478)
.
T Consensus 112 ~ 112 (355)
T cd03819 112 Y 112 (355)
T ss_pred h
Confidence 4
No 43
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=97.69 E-value=0.00019 Score=68.70 Aligned_cols=45 Identities=16% Similarity=0.145 Sum_probs=39.8
Q ss_pred eEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCCC
Q 011755 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNY 324 (478)
Q Consensus 279 kIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~i 324 (478)
||++++.-+.|. ..||.+.++..|.++|++.|++|.++++.....
T Consensus 1 ~ili~~~~~~~~-~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~ 45 (365)
T cd03809 1 RILIDARFLASR-RPTGIGRYARELLRALLKLDPEEVLLLLPGAPG 45 (365)
T ss_pred CEEEechhhhcC-CCCcHHHHHHHHHHHHHhcCCceEEEEecCccc
Confidence 688888887775 689999999999999999999999999987643
No 44
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=97.67 E-value=0.00079 Score=63.22 Aligned_cols=117 Identities=17% Similarity=0.121 Sum_probs=72.7
Q ss_pred eEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCCCCcceEEEEeCCcceEEEEEEEEECCeeEE
Q 011755 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFV 358 (478)
Q Consensus 279 kIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~i~~~~~~~i~~~~~v~G~~~~v~V~~~~idGV~vy 358 (478)
|||+|+.. .||...++..|.++|.++||+|.|+++.-..... ....|++++
T Consensus 1 kIl~i~~~------~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~-----------------------~~~~~~~~~ 51 (359)
T cd03808 1 KILHIVTV------DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEE-----------------------LEALGVKVI 51 (359)
T ss_pred CeeEEEec------chhHHHHHHHHHHHHHhcCCeeEEEecCCCcccc-----------------------cccCCceEE
Confidence 68999876 6899999999999999999999999986432210 112344544
Q ss_pred EccCccccccCCCcCCCCcccHHHHHHHHHHHHHHhcccCCCCCccCCCCCcEEEECCchhhHHHHHHHHHhhcCCCCCC
Q 011755 359 FLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQY 438 (478)
Q Consensus 359 FId~p~fF~r~~~IYg~~~~Dn~~RFafFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhTALaPvyLK~~y~~~~~f~~ 438 (478)
.+..... .... + +.......+..++.+ .+|||||+|.+..+++..+++... ..
T Consensus 52 ~~~~~~~---~~~~----~-----~~~~~~~~~~~~~~~---------~~~dvv~~~~~~~~~~~~~~~~~~------~~ 104 (359)
T cd03808 52 PIPLDRR---GINP----F-----KDLKALLRLYRLLRK---------ERPDIVHTHTPKPGILGRLAARLA------GV 104 (359)
T ss_pred ecccccc---ccCh----H-----hHHHHHHHHHHHHHh---------cCCCEEEEccccchhHHHHHHHHc------CC
Confidence 4332210 0000 0 111122223333432 268999999988887766655422 34
Q ss_pred CcEEEEEcCCCCc
Q 011755 439 TRSLLVIHNIAHQ 451 (478)
Q Consensus 439 iptVfTIHNLayQ 451 (478)
.++++++|...+.
T Consensus 105 ~~~i~~~~~~~~~ 117 (359)
T cd03808 105 PKVIYTVHGLGFV 117 (359)
T ss_pred CCEEEEecCcchh
Confidence 6889999987644
No 45
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=97.63 E-value=0.00034 Score=67.05 Aligned_cols=41 Identities=29% Similarity=0.368 Sum_probs=35.3
Q ss_pred eEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCC
Q 011755 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (478)
Q Consensus 279 kIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg 322 (478)
||++|+.- .|. .||.+.++..|.++|++.||+|.|+.....
T Consensus 1 kI~~v~~~-~~~--~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 41 (366)
T cd03822 1 RIALVSPY-PPR--KCGIATFTTDLVNALSARGPDVLVVSVAAL 41 (366)
T ss_pred CeEEecCC-CCC--CCcHHHHHHHHHHHhhhcCCeEEEEEeecc
Confidence 79999864 554 799999999999999999999999987643
No 46
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=97.63 E-value=0.00067 Score=68.97 Aligned_cols=117 Identities=17% Similarity=0.120 Sum_probs=62.9
Q ss_pred eEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCCCCcceEEEEeCCcceEEEEEEEEECCeeEE
Q 011755 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFV 358 (478)
Q Consensus 279 kIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~i~~~~~~~i~~~~~v~G~~~~v~V~~~~idGV~vy 358 (478)
|||||..-+++ -. ..|.++|+++||+|+|+++.-..... .||+++
T Consensus 1 ~il~~~~~~p~-----~~----~~la~~L~~~G~~v~~~~~~~~~~~~--------------------------~~v~~~ 45 (396)
T cd03818 1 RILFVHQNFPG-----QF----RHLAPALAAQGHEVVFLTEPNAAPPP--------------------------GGVRVV 45 (396)
T ss_pred CEEEECCCCch-----hH----HHHHHHHHHCCCEEEEEecCCCCCCC--------------------------CCeeEE
Confidence 68888877442 22 35999999999999999986431110 045555
Q ss_pred EccCccccccCCCcCCCCcccHHHHHHHHHHHHHHhcccCCCCCccCCCCCcEEEECCchhhHHHHHHHHHhhcCCCCCC
Q 011755 359 FLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQY 438 (478)
Q Consensus 359 FId~p~fF~r~~~IYg~~~~Dn~~RFafFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhTALaPvyLK~~y~~~~~f~~ 438 (478)
.+..+..-.. +.+. |.+...+.+...+++++.+..... -+++|||||+|.+.... ++++..+ .+
T Consensus 46 ~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----~~~~pdvi~~h~~~~~~--~~l~~~~------~~ 109 (396)
T cd03818 46 RYRPPRGPTS--GTHP--YLREFEEAVLRGQAVARALLALRA----KGFRPDVIVAHPGWGET--LFLKDVW------PD 109 (396)
T ss_pred EecCCCCCCC--CCCc--cchhHHHHHHHHHHHHHHHHHHHh----cCCCCCEEEECCccchh--hhHHHhC------CC
Confidence 5444322111 1222 223333333334444443322100 03579999999755422 3466543 35
Q ss_pred CcEEEEEc
Q 011755 439 TRSLLVIH 446 (478)
Q Consensus 439 iptVfTIH 446 (478)
+|+|.++|
T Consensus 110 ~~~v~~~~ 117 (396)
T cd03818 110 APLIGYFE 117 (396)
T ss_pred CCEEEEEe
Confidence 77776554
No 47
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.62 E-value=0.00056 Score=67.37 Aligned_cols=118 Identities=17% Similarity=0.027 Sum_probs=65.5
Q ss_pred EEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCCCCcceEEEEeCCcceEEEEEEEEECCeeEEE
Q 011755 280 VILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFVF 359 (478)
Q Consensus 280 IL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~i~~~~~~~i~~~~~v~G~~~~v~V~~~~idGV~vyF 359 (478)
|++.+.| +||==.++..|.++|.++||+|.|+++..+..... ....|++++.
T Consensus 2 ~~~~~~~------~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~----------------------~~~~~~~~~~ 53 (350)
T cd03785 2 ILIAGGG------TGGHIFPALALAEELRERGAEVLFLGTKRGLEARL----------------------VPKAGIPLHT 53 (350)
T ss_pred EEEEecC------chhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhc----------------------ccccCCceEE
Confidence 5555544 44444455599999999999999998865321100 0113566666
Q ss_pred ccCccccccCCCcCCCCcccHHHH---HHHHHHHHHHhcccCCCCCccCCCCCcEEEECCchhhHHHHHHHHHhhcCCCC
Q 011755 360 LDSPLFRHLGNNIYGGGREDILKR---MVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLM 436 (478)
Q Consensus 360 Id~p~fF~r~~~IYg~~~~Dn~~R---FafFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhTALaPvyLK~~y~~~~~f 436 (478)
+..+.+... +.+ ..... +....+.+..++++ ++|||||+|.|.+++...+++..
T Consensus 54 ~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~i~~---------~~pDvI~~~~~~~~~~~~~~a~~------- 110 (350)
T cd03785 54 IPVGGLRRK--GSL-----KKLKAPFKLLKGVLQARKILKK---------FKPDVVVGFGGYVSGPVGLAAKL------- 110 (350)
T ss_pred EEecCcCCC--ChH-----HHHHHHHHHHHHHHHHHHHHHh---------cCCCEEEECCCCcchHHHHHHHH-------
Confidence 554333211 011 11111 12222333344443 37999999999887655444332
Q ss_pred CCCcEEEEEcCC
Q 011755 437 QYTRSLLVIHNI 448 (478)
Q Consensus 437 ~~iptVfTIHNL 448 (478)
.++|+|++.|+.
T Consensus 111 ~~~p~v~~~~~~ 122 (350)
T cd03785 111 LGIPLVIHEQNA 122 (350)
T ss_pred hCCCEEEEcCCC
Confidence 257888877764
No 48
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.62 E-value=0.00035 Score=66.76 Aligned_cols=42 Identities=29% Similarity=0.376 Sum_probs=38.4
Q ss_pred eEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCC
Q 011755 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (478)
Q Consensus 279 kIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg 322 (478)
||++|+..+.|. .||.+..+..|.++|+++||+|.|+++...
T Consensus 1 kIl~i~~~~~p~--~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~ 42 (364)
T cd03814 1 RIAIVTDTFLPQ--VNGVVRTLQRLVEHLRARGHEVLVIAPGPF 42 (364)
T ss_pred CeEEEecccCcc--ccceehHHHHHHHHHHHCCCEEEEEeCCch
Confidence 799999998886 499999999999999999999999998764
No 49
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=97.61 E-value=0.00032 Score=70.39 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=33.6
Q ss_pred eEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeC
Q 011755 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (478)
Q Consensus 279 kIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~ 320 (478)
||++++.=+ ..||...++..|.++|.+.||+|.+++|.
T Consensus 1 ki~~~~~~~----~~GGv~~~~~~l~~~l~~~g~~v~~~~~~ 38 (372)
T cd03792 1 KVLHVNSTP----YGGGVAEILHSLVPLMRDLGVDTRWEVIK 38 (372)
T ss_pred CeEEEeCCC----CCCcHHHHHHHHHHHHHHcCCCceEEecC
Confidence 688888642 47999999999999999999999999984
No 50
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=97.61 E-value=0.00033 Score=68.02 Aligned_cols=40 Identities=10% Similarity=0.174 Sum_probs=35.8
Q ss_pred eEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCC
Q 011755 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (478)
Q Consensus 279 kIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg 322 (478)
|||+++.-+ ..||...++..|.++|++.|++|+|+++...
T Consensus 1 kIl~~~~~~----~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~ 40 (358)
T cd03812 1 KILHIVGTM----NRGGIETFIMNYYRNLDRSKIQFDFLVTSKE 40 (358)
T ss_pred CEEEEeCCC----CCccHHHHHHHHHHhcCccceEEEEEEeCCC
Confidence 689988764 5899999999999999999999999998754
No 51
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=97.48 E-value=0.001 Score=62.25 Aligned_cols=42 Identities=31% Similarity=0.583 Sum_probs=37.5
Q ss_pred eEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCC
Q 011755 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN 323 (478)
Q Consensus 279 kIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~ 323 (478)
||++++.-..| .||...++..|.++|+++||+|.|+++....
T Consensus 1 kI~i~~~~~~~---~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 42 (348)
T cd03820 1 KILFVIPSLGN---AGGAERVLSNLANALAEKGHEVTIISLDKGE 42 (348)
T ss_pred CeEEEeccccC---CCChHHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 68999987666 8999999999999999999999999987653
No 52
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.42 E-value=0.0015 Score=63.20 Aligned_cols=42 Identities=31% Similarity=0.379 Sum_probs=38.4
Q ss_pred eEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCC
Q 011755 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (478)
Q Consensus 279 kIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg 322 (478)
|||+|+..+.|. .||.+.++..|.++|+++||+|.|+++.-.
T Consensus 1 kil~i~~~~~p~--~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (357)
T cd03795 1 RVLHVGKFYPPD--RGGIEQVIRDLAEGLAARGIEVAVLCASPE 42 (357)
T ss_pred CeeEecCCCCCC--CCcHHHHHHHHHHHHHhCCCceEEEecCCC
Confidence 799999998886 899999999999999999999999987643
No 53
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=97.40 E-value=0.00054 Score=68.90 Aligned_cols=42 Identities=10% Similarity=0.222 Sum_probs=36.1
Q ss_pred ceEEEEecccCCccccCcHHHHHhHHHHHHHHC--CCeEEEEeeCCC
Q 011755 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARR--GHRVMVVAPHYG 322 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~--GheV~VItP~Yg 322 (478)
|||+++++ ..| ..||...++..|.++|.++ |++|.|+.|...
T Consensus 1 mkI~~~~~-~~~--~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~ 44 (359)
T PRK09922 1 MKIAFIGE-AVS--GFGGMETVISNVINTFEESKINCEMFFFCRNDK 44 (359)
T ss_pred CeeEEecc-ccc--CCCchhHHHHHHHHHhhhcCcceeEEEEecCCC
Confidence 89999975 333 4699999999999999999 899999998654
No 54
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=97.34 E-value=0.0011 Score=61.85 Aligned_cols=41 Identities=27% Similarity=0.393 Sum_probs=35.9
Q ss_pred eEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCC
Q 011755 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN 323 (478)
Q Consensus 279 kIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~ 323 (478)
||++++.... .||...++..|.++|+++|++|.|+++....
T Consensus 1 kIl~~~~~~~----~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~ 41 (353)
T cd03811 1 KILFVIPSLG----GGGAERVLLNLANGLDKRGYDVTLVVLRDEG 41 (353)
T ss_pred CeEEEeeccc----CCCcchhHHHHHHHHHhcCceEEEEEcCCCC
Confidence 6889987643 7999999999999999999999999987643
No 55
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=97.34 E-value=0.002 Score=62.13 Aligned_cols=39 Identities=15% Similarity=0.050 Sum_probs=32.8
Q ss_pred eEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCC
Q 011755 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (478)
Q Consensus 279 kIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg 322 (478)
|||+|+.-+.|. -..++..+-++|.++||+|.|+++...
T Consensus 1 ki~~~~~~~~~~-----~~~~~~~~~~~L~~~g~~v~v~~~~~~ 39 (355)
T cd03799 1 KIAYLVKEFPRL-----SETFILREILALEAAGHEVEIFSLRPP 39 (355)
T ss_pred CEEEECCCCCCc-----chHHHHHHHHHHHhCCCeEEEEEecCc
Confidence 699999876442 557889999999999999999998765
No 56
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=97.22 E-value=0.0002 Score=79.22 Aligned_cols=155 Identities=15% Similarity=0.162 Sum_probs=86.0
Q ss_pred EecccCCccccCcHHHHHhHHHHHHHH-CCCeEEEEeeCCCCCCC-------CCCCcceEEE-EeCCcceEEEEEEEE--
Q 011755 283 VAAECGPWSKTGGLGDVAGALPKALAR-RGHRVMVVAPHYGNYAE-------PQDTGIRKRY-RVDRQDIEVAYFQAY-- 351 (478)
Q Consensus 283 VSsE~aPfaKtGGLGDVVgsLPkALa~-~GheV~VItP~Yg~i~~-------~~~~~i~~~~-~v~G~~~~v~V~~~~-- 351 (478)
+|||+.- ||||+=.|+.+=++.+++ .|.+..+|=|.+..-.. ..+..+...+ .+. ...+.|..+.
T Consensus 2 ~sWEVcN--KVGGIYTVi~tKA~~~~~e~gd~y~lIGP~~~~~~~~e~e~~e~~~~~l~~~~~~~~--~~Gl~v~~GRWl 77 (633)
T PF05693_consen 2 VSWEVCN--KVGGIYTVISTKAPTMVEEFGDNYILIGPYNEQNARTEVEEIEPDNPLLKDALESMR--EEGLKVRYGRWL 77 (633)
T ss_dssp EETTTTS---SSSHHHHHHHHHHHHHHHHGGGEEEEEE--TTTHHHHEEE--SSSGGHHHHHHHHH--HTT-EEEEEEES
T ss_pred chhhhcc--ccCCeehhhhccHHHHHHHHCCeEEEECCCCCcccCCCCCcCCCCCHHHHHHHHHHH--hCCCeEEEecee
Confidence 6899765 799999999999988876 49999999998754210 0000010000 000 0113333343
Q ss_pred ECCee-EEEccCccccccCCCcCCCC----------cccHHHHHHHHHHHHHHhcccCCCCCccCCCCCcEEEECCchhh
Q 011755 352 IDGVD-FVFLDSPLFRHLGNNIYGGG----------REDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTA 420 (478)
Q Consensus 352 idGV~-vyFId~p~fF~r~~~IYg~~----------~~Dn~~RFafFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhTA 420 (478)
++|.+ ++++|-..++.+.+.+|++- ...+..-.++|+.|+..++...-. ..-....-|.|+|.|+||
T Consensus 78 I~G~P~vIL~D~~s~~~~ldeik~~lW~~~gIdS~~~~~dynea~~Fgyava~fi~~f~~--~~~~~~~ViaHfHEWmaG 155 (633)
T PF05693_consen 78 IPGRPIVILFDFGSFFWKLDEIKGELWELFGIDSPHGDGDYNEAVMFGYAVAWFIEEFYK--FYEEKPKVIAHFHEWMAG 155 (633)
T ss_dssp STT--EEEEEEGGGGGGGHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHHHHHHHHHH--H-S-SEEEEEEEESGGGT
T ss_pred ECCcCeEEEEeCchHHHHHHHHHHHHHHHcCCCCCCCCcchhHHHHHHHHHHHHHHHHHH--hhcCCCcEEEEechHhHh
Confidence 45654 55667776665433444310 011223345677776665432100 000013458999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCcEEEEEcCCC
Q 011755 421 LLPVYLKAYYRDNGLMQYTRSLLVIHNIA 449 (478)
Q Consensus 421 LaPvyLK~~y~~~~~f~~iptVfTIHNLa 449 (478)
+..+|||... ..+.||||-|.+-
T Consensus 156 ~gll~lr~~~------~~VaTvFTTHAT~ 178 (633)
T PF05693_consen 156 VGLLYLRKRK------PDVATVFTTHATL 178 (633)
T ss_dssp THHHHHHHTT-------SCEEEEEESS-H
T ss_pred HHHHHHhccC------CCeeEEEEecccc
Confidence 9999998643 3689999999873
No 57
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.20 E-value=0.0018 Score=66.39 Aligned_cols=127 Identities=9% Similarity=0.069 Sum_probs=74.2
Q ss_pred ceEEEEecccCC--ccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCCCCcceEEEEeCCcceEEEEEEEEECCe
Q 011755 278 MNVILVAAECGP--WSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGV 355 (478)
Q Consensus 278 MkIL~VSsE~aP--faKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~i~~~~~~~i~~~~~v~G~~~~v~V~~~~idGV 355 (478)
-||+|++.|..| ....||.-.++..+.+.|++ +|+|++-....+++. + ...+|+
T Consensus 3 ~~~~~~~~~~~~~p~~~~g~ve~~~~~~~~~l~~---~~~~~~~~~~~~~~~-~--------------------~~~~~~ 58 (380)
T PRK15484 3 DKIIFTVTPIFSIPPRGAAAVETWIYQVAKRTSI---PNRIACIKNPGYPEY-T--------------------KVNDNC 58 (380)
T ss_pred ceEEEEeccCCCCCCccccHHHHHHHHhhhhccC---CeeEEEecCCCCCch-h--------------------hccCCC
Confidence 389999999774 47899999999999999954 999998776544421 0 122455
Q ss_pred eEEEccCccccccCCCcCCCCcccHHHHHHHHHHHHHHhcccCCCCCccCCCCCcEEEECCchhhHHHHHHHHHhhcCCC
Q 011755 356 DFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGL 435 (478)
Q Consensus 356 ~vyFId~p~fF~r~~~IYg~~~~Dn~~RFafFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhTALaPvyLK~~y~~~~~ 435 (478)
.+..+..+..+.+..+.|- .. +..-|+..++.++.... +.++||||+|+ +..+.. .++..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~------~~~~~vi~v~~-~~~~~~-~~~~~------ 118 (380)
T PRK15484 59 DIHYIGFSRIYKRLFQKWT----RL--DPLPYSQRILNIAHKFT------ITKDSVIVIHN-SMKLYR-QIRER------ 118 (380)
T ss_pred ceEEEEeccccchhhhhhh----cc--CchhHHHHHHHHHHhcC------CCCCcEEEEeC-cHHhHH-HHHhh------
Confidence 5555543333221001110 00 12234444444332211 13579999998 223332 23322
Q ss_pred CCCCcEEEEEcCC
Q 011755 436 MQYTRSLLVIHNI 448 (478)
Q Consensus 436 f~~iptVfTIHNL 448 (478)
+.++|+|+|+||.
T Consensus 119 ~~~~~~v~~~h~~ 131 (380)
T PRK15484 119 APQAKLVMHMHNA 131 (380)
T ss_pred CCCCCEEEEEecc
Confidence 2468999999986
No 58
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.15 E-value=0.0013 Score=68.85 Aligned_cols=39 Identities=23% Similarity=0.237 Sum_probs=34.8
Q ss_pred ceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeC
Q 011755 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~ 320 (478)
||||+|-.- ...||-|.++..|.+.|.++||+|.|+.=+
T Consensus 1 mkil~i~~~----l~~GGaeri~~~L~~~l~~~G~~~~i~~~~ 39 (405)
T PRK10125 1 MNILQFNVR----LAEGGAAGVALDLHQRALQQGLASHFVYGY 39 (405)
T ss_pred CeEEEEEee----ecCCchhHHHHHHHHHHHhcCCeEEEEEec
Confidence 899998863 568999999999999999999999998754
No 59
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=97.07 E-value=0.0086 Score=56.33 Aligned_cols=42 Identities=33% Similarity=0.523 Sum_probs=34.9
Q ss_pred EEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCC
Q 011755 280 VILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (478)
Q Consensus 280 IL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg 322 (478)
||+++.-+.| ...||-+.++..|.++|+++|++|.|+++.-.
T Consensus 1 iLii~~~~p~-~~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~ 42 (377)
T cd03798 1 ILVISSLYPP-PNNGGGGIFVKELARALAKRGVEVTVLAPGPW 42 (377)
T ss_pred CeEeccCCCC-CCCchHHHHHHHHHHHHHHCCCceEEEecCCC
Confidence 5777776544 34699999999999999999999999998654
No 60
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=96.81 E-value=0.011 Score=61.58 Aligned_cols=39 Identities=18% Similarity=0.083 Sum_probs=28.6
Q ss_pred ceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCC
Q 011755 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg 322 (478)
-+|++++.= -+|-.--+..|.++|+++||+|+||++...
T Consensus 4 ~~~~~~~~~------~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~ 42 (415)
T cd03816 4 KRVCVLVLG------DIGRSPRMQYHALSLAKHGWKVDLVGYLET 42 (415)
T ss_pred cEEEEEEec------ccCCCHHHHHHHHHHHhcCceEEEEEecCC
Confidence 466676652 234555567899999999999999987643
No 61
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=96.54 E-value=0.012 Score=57.78 Aligned_cols=36 Identities=14% Similarity=0.010 Sum_probs=29.3
Q ss_pred eEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCC
Q 011755 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHY 321 (478)
Q Consensus 279 kIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Y 321 (478)
|||+++.-++|. -...+..+.+.|. |++|.+++...
T Consensus 1 ~~~~~~~~~~~~-----~e~~~~~~~~~l~--~~~~~~~~~~~ 36 (367)
T cd05844 1 RVLIFRPLLLAP-----SETFVRNQAEALR--RFRPVYVGGRR 36 (367)
T ss_pred CEEEEeCCCCCC-----chHHHHHHHHhcc--cCCcEEEEeec
Confidence 689999998886 5678899999994 78888887654
No 62
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=96.34 E-value=0.043 Score=57.21 Aligned_cols=40 Identities=23% Similarity=0.101 Sum_probs=29.4
Q ss_pred ceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCC
Q 011755 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg 322 (478)
|||.||..+++-++ -..+..=-.+|.++||+|.|+.-+-+
T Consensus 1 m~ia~~~~~~P~~s-----etFi~~ei~~l~~~G~~v~~~s~~~~ 40 (406)
T PRK15427 1 MKVGFFLLKFPLSS-----ETFVLNQITAFIDMGFEVEIVALQKG 40 (406)
T ss_pred CeEEEEeccCCccc-----hhhHHHHHHHHHHcCceEEEEEccCC
Confidence 89999999965443 33444444588999999999976543
No 63
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=95.85 E-value=0.028 Score=56.99 Aligned_cols=43 Identities=21% Similarity=0.401 Sum_probs=37.4
Q ss_pred CCceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCC
Q 011755 276 NVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN 323 (478)
Q Consensus 276 ~~MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~ 323 (478)
..||||++|+-+ -||-.-.+.+|.++|.++|++|.++.|.+..
T Consensus 3 ~~~rili~t~~~-----G~GH~~~a~al~~~l~~~g~~~~~~~d~~~~ 45 (380)
T PRK13609 3 KNPKVLILTAHY-----GNGHVQVAKTLEQTFRQKGIKDVIVCDLFGE 45 (380)
T ss_pred CCCeEEEEEcCC-----CchHHHHHHHHHHHHHhcCCCcEEEEEhHHh
Confidence 468999999874 3499999999999999999999999998853
No 64
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=95.69 E-value=0.057 Score=57.24 Aligned_cols=122 Identities=23% Similarity=0.318 Sum_probs=78.7
Q ss_pred ceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCCCCcceEEEEeCCcceEEEEEEEEECCeeE
Q 011755 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDF 357 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~i~~~~~~~i~~~~~v~G~~~~v~V~~~~idGV~v 357 (478)
++|+||+.-++|- +||.-.++..|++.|-++||.|.|++=.||+-.. + ++ .-+|..|
T Consensus 1 ~~i~mVsdff~P~--~ggveshiy~lSq~li~lghkVvvithayg~r~g-----i--ry--------------lt~glkV 57 (426)
T KOG1111|consen 1 SRILMVSDFFYPS--TGGVESHIYALSQCLIRLGHKVVVITHAYGNRVG-----I--RY--------------LTNGLKV 57 (426)
T ss_pred CcceeeCcccccC--CCChhhhHHHhhcchhhcCCeEEEEeccccCccc-----e--ee--------------ecCCceE
Confidence 5899999998885 8999999999999999999999999999985421 1 11 1234555
Q ss_pred EEccCccccccC--CCcCCCCcccHHHHHHHHHHHHHHhcccCCCCCccCCCCCcEEEECCchhhHHHHHHHHHhhcCCC
Q 011755 358 VFLDSPLFRHLG--NNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGL 435 (478)
Q Consensus 358 yFId~p~fF~r~--~~IYg~~~~Dn~~RFafFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhTALaPvyLK~~y~~~~~ 435 (478)
|++.-.-.|... +.+|+. .+ ..|..+ ++ .+..|||.|-=.+.++==.|.+ ...
T Consensus 58 yylp~~v~~n~tT~ptv~~~-~P--llr~i~--------lr----------E~I~ivhghs~fS~lahe~l~h----art 112 (426)
T KOG1111|consen 58 YYLPAVVGYNQTTFPTVFSD-FP--LLRPIL--------LR----------ERIEIVHGHSPFSYLAHEALMH----ART 112 (426)
T ss_pred EEEeeeeeecccchhhhhcc-Cc--ccchhh--------hh----------hceEEEecCChHHHHHHHHHHH----HHh
Confidence 555444333100 123332 10 111111 11 2467999998888776433332 122
Q ss_pred CCCCcEEEEEcCC
Q 011755 436 MQYTRSLLVIHNI 448 (478)
Q Consensus 436 f~~iptVfTIHNL 448 (478)
+ +.++|||=|.+
T Consensus 113 M-GlktVfTdHSl 124 (426)
T KOG1111|consen 113 M-GLKTVFTDHSL 124 (426)
T ss_pred c-CceEEEecccc
Confidence 3 48999999996
No 65
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=95.37 E-value=0.084 Score=52.71 Aligned_cols=37 Identities=27% Similarity=0.214 Sum_probs=31.9
Q ss_pred ceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEe
Q 011755 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VIt 318 (478)
.||++|-+-. ..||...++..|.++|.+.|+++.|++
T Consensus 2 ~~il~ii~~~----~~GG~e~~~~~l~~~l~~~~~~~~v~~ 38 (374)
T TIGR03088 2 PLIVHVVYRF----DVGGLENGLVNLINHLPADRYRHAVVA 38 (374)
T ss_pred ceEEEEeCCC----CCCcHHHHHHHHHhhccccccceEEEE
Confidence 4788887653 479999999999999999999998886
No 66
>PLN02275 transferase, transferring glycosyl groups
Probab=93.92 E-value=0.51 Score=48.29 Aligned_cols=27 Identities=30% Similarity=0.142 Sum_probs=21.8
Q ss_pred cCcHHHHHhHHHHHHHHCCC-eEEEEee
Q 011755 293 TGGLGDVAGALPKALARRGH-RVMVVAP 319 (478)
Q Consensus 293 tGGLGDVVgsLPkALa~~Gh-eV~VItP 319 (478)
-+|-...+..+...|+++|+ +|+|+..
T Consensus 14 ~~g~~~r~~~~~~~l~~~~~~~v~vi~~ 41 (371)
T PLN02275 14 DFGRSPRMQYHALSLARQASFQVDVVAY 41 (371)
T ss_pred CCCCCHHHHHHHHHHHhcCCceEEEEEe
Confidence 34667788888999999885 7999975
No 67
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=93.88 E-value=0.59 Score=53.16 Aligned_cols=30 Identities=17% Similarity=0.134 Sum_probs=26.0
Q ss_pred eEEEEecccCCccccCcHHHHHhHHHHHHHHCCC
Q 011755 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGH 312 (478)
Q Consensus 279 kIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~Gh 312 (478)
||+||... ...||--.++-.|..+|.+.+.
T Consensus 283 rIl~vi~s----l~~GGAEr~~~~La~~l~~~~~ 312 (694)
T PRK15179 283 PVLMINGS----LGAGGAERQFVNTAVALQSAIQ 312 (694)
T ss_pred eEEEEeCC----CCCCcHHHHHHHHHHHHHhccc
Confidence 89999876 4469999999999999999853
No 68
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=92.98 E-value=2 Score=41.55 Aligned_cols=129 Identities=11% Similarity=0.192 Sum_probs=78.5
Q ss_pred eEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCCCCcceEEEEeCCcceEEEEEEEEECCeeEE
Q 011755 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFV 358 (478)
Q Consensus 279 kIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~i~~~~~~~i~~~~~v~G~~~~v~V~~~~idGV~vy 358 (478)
||.++..==.| ++-||-..+|..|...|+++|++|+|.......-.. .....|+++.
T Consensus 3 kIaIiGtrGIP-a~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~----------------------~~~y~gv~l~ 59 (185)
T PF09314_consen 3 KIAIIGTRGIP-ARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYK----------------------EFEYNGVRLV 59 (185)
T ss_pred eEEEEeCCCCC-cccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCC----------------------CcccCCeEEE
Confidence 68888877667 779999999999999999999999999764321110 1133577776
Q ss_pred EccCccccccCCCcCCCCcccHHHHHHHHHHHHHHhcccCCCCCccCCCCCcEEEECCchh-hHHHHHHHHHhhcCCCCC
Q 011755 359 FLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHT-ALLPVYLKAYYRDNGLMQ 437 (478)
Q Consensus 359 FId~p~fF~r~~~IYg~~~~Dn~~RFafFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhT-ALaPvyLK~~y~~~~~f~ 437 (478)
-|..|.. |. ..-+.+...|++..++... .-..+.||||+|---+ +++..+++.... .
T Consensus 60 ~i~~~~~--------g~-----~~si~yd~~sl~~al~~~~----~~~~~~~ii~ilg~~~g~~~~~~~r~~~~-----~ 117 (185)
T PF09314_consen 60 YIPAPKN--------GS-----AESIIYDFLSLLHALRFIK----QDKIKYDIILILGYGIGPFFLPFLRKLRK-----K 117 (185)
T ss_pred EeCCCCC--------Cc-----hHHHHHHHHHHHHHHHHHh----hccccCCEEEEEcCCccHHHHHHHHhhhh-----c
Confidence 6654421 10 1122233333333332100 0012468999998874 444444443211 2
Q ss_pred CCcEEEEEcCCCCcc
Q 011755 438 YTRSLLVIHNIAHQI 452 (478)
Q Consensus 438 ~iptVfTIHNLayQG 452 (478)
+.|+++++|-++++-
T Consensus 118 g~~v~vN~DGlEWkR 132 (185)
T PF09314_consen 118 GGKVVVNMDGLEWKR 132 (185)
T ss_pred CCcEEECCCcchhhh
Confidence 469999999999764
No 69
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=91.37 E-value=0.56 Score=47.30 Aligned_cols=36 Identities=31% Similarity=0.303 Sum_probs=25.7
Q ss_pred CceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011755 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAP 319 (478)
Q Consensus 277 ~MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP 319 (478)
+|||++++.| |||-=--+- |.++|.+.++++.++.-
T Consensus 1 ~~ki~i~~Gg------t~G~i~~a~-l~~~L~~~~~~~~~~~~ 36 (380)
T PRK00025 1 PLRIAIVAGE------VSGDLLGAG-LIRALKARAPNLEFVGV 36 (380)
T ss_pred CceEEEEecC------cCHHHHHHH-HHHHHHhcCCCcEEEEE
Confidence 4899999987 555322233 88888888888888864
No 70
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=89.65 E-value=0.56 Score=50.15 Aligned_cols=46 Identities=24% Similarity=0.255 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcccCCCCCccCCCCCcEEEECCchhhHHHHHHHHHhhcCCCCCCCcEEEEEcC
Q 011755 385 VLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHN 447 (478)
Q Consensus 385 afFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhTALaPvyLK~~y~~~~~f~~iptVfTIHN 447 (478)
-.|+.++++..+ ..|+||+||+|-.++|.+|+... ...|++|..|-
T Consensus 119 ~~fa~~i~~~~~-----------~~d~iwihDyhl~llp~~lr~~~------~~~~i~~f~Hi 164 (460)
T cd03788 119 RKFADAIAEVLR-----------PGDLVWVHDYHLLLLPQMLRERG------PDARIGFFLHI 164 (460)
T ss_pred HHHHHHHHHhcC-----------CCCEEEEeChhhhHHHHHHHhhC------CCCeEEEEEeC
Confidence 467777776553 34999999999999999998642 35799999994
No 71
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=88.42 E-value=4.9 Score=42.22 Aligned_cols=36 Identities=22% Similarity=0.343 Sum_probs=30.7
Q ss_pred CCccccC-cHHHHHhHHHHHHHHC--CCeEEEEeeCCCC
Q 011755 288 GPWSKTG-GLGDVAGALPKALARR--GHRVMVVAPHYGN 323 (478)
Q Consensus 288 aPfaKtG-GLGDVVgsLPkALa~~--GheV~VItP~Yg~ 323 (478)
-|++-.| |=-.|+-....+|.++ ||+|.|++-.+..
T Consensus 7 hp~~~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~ 45 (419)
T cd03806 7 HPYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDA 45 (419)
T ss_pred CCCCCCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCCC
Confidence 5888888 7778999999999998 8999999988753
No 72
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=85.93 E-value=3 Score=43.29 Aligned_cols=37 Identities=11% Similarity=0.176 Sum_probs=28.3
Q ss_pred CCceEEEEecccCCccccCcHHHHHhHHHHHHHHCCC---eEEEE
Q 011755 276 NVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGH---RVMVV 317 (478)
Q Consensus 276 ~~MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~Gh---eV~VI 317 (478)
..||||++++.+ =||---++.+|-++|.++|. +|.|+
T Consensus 4 ~~~~vlil~~~~-----G~GH~~aA~al~~~~~~~~~~~~~~~~~ 43 (391)
T PRK13608 4 QNKKILIITGSF-----GNGHMQVTQSIVNQLNDMNLDHLSVIEH 43 (391)
T ss_pred CCceEEEEECCC-----CchHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 358999999762 24899999999999998864 45444
No 73
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=84.97 E-value=2.9 Score=42.34 Aligned_cols=50 Identities=12% Similarity=-0.071 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhcccCCCCCccCCCCCcEEEEC-CchhhHHHHHHHHHhhcCCCCCCCcEEEEEc
Q 011755 381 LKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIAN-DWHTALLPVYLKAYYRDNGLMQYTRSLLVIH 446 (478)
Q Consensus 381 ~~RFafFskAaLEll~~~~~g~~~~g~~PDIIHaH-DWhTALaPvyLK~~y~~~~~f~~iptVfTIH 446 (478)
....+..-....+++.+ .+||+||+| ||.++++.+++... .++|++++-+
T Consensus 68 ~~~~~~~~~~l~~~l~~---------~~pDiv~~~gd~~~~la~a~aa~~-------~~ipv~h~~~ 118 (365)
T TIGR00236 68 GEITSNMLEGLEELLLE---------EKPDIVLVQGDTTTTLAGALAAFY-------LQIPVGHVEA 118 (365)
T ss_pred HHHHHHHHHHHHHHHHH---------cCCCEEEEeCCchHHHHHHHHHHH-------hCCCEEEEeC
Confidence 34444444444455543 378999999 89999987777643 2589875533
No 74
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=84.11 E-value=3.2 Score=47.92 Aligned_cols=161 Identities=20% Similarity=0.161 Sum_probs=95.1
Q ss_pred ccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCC-CCC-----C-C----CC------cc---e--------EEEE
Q 011755 286 ECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN-YAE-----P-Q----DT------GI---R--------KRYR 337 (478)
Q Consensus 286 E~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~-i~~-----~-~----~~------~i---~--------~~~~ 337 (478)
|..|-.- ||||..+++.=+.++.+|.-.+.+--+|.. +.. . + +. .+ + ..+.
T Consensus 108 e~~p~lg-GGLGrLAgcfldS~a~Lg~P~~G~Gl~Y~~GyF~Q~~~dG~Q~E~p~~w~~~~~pwe~~r~~~a~~~d~~V~ 186 (750)
T COG0058 108 ESDPGLG-GGLGRLAGCFLDSAADLGLPLTGYGLRYRYGYFRQSDVDGWQVELPDEWLKYGNPWEFLRDAEGVPYDVPVP 186 (750)
T ss_pred ccCcccc-ccHHHHHHhHHHHHHhcCCCceEEEeeecCCceeeeccCCceEecchhhhccCCcceeecccCCceeeeeEE
Confidence 3446554 999999999999999999998888888853 211 0 0 00 00 0 1112
Q ss_pred eCC-cceEEEEEEEEECCeeEEEccCcc--cc--c--cCCCcCCCCcccHHHHH---HHHHHHHHHhcccCC-C-CCccC
Q 011755 338 VDR-QDIEVAYFQAYIDGVDFVFLDSPL--FR--H--LGNNIYGGGREDILKRM---VLFCKAAIEIPWYVP-C-GGVCY 405 (478)
Q Consensus 338 v~G-~~~~v~V~~~~idGV~vyFId~p~--fF--~--r~~~IYg~~~~Dn~~RF---afFskAaLEll~~~~-~-g~~~~ 405 (478)
..+ ....+++|......++++|.+-.. -- . -...+|+++- ...|+ .||+.|.+..+.+.. . +. +
T Consensus 187 g~~~~~~~lrlW~a~~~~~~~~l~~~n~~e~~~~~~~iT~~LYp~Ds--~elRl~Qeyfl~~agvq~I~~~~~~~~~-~- 262 (750)
T COG0058 187 GYDNRVVTLRLWQAQVGRVPLYLLDFNVGENKNDARNITRVLYPGDS--KELRLKQEYFLGSAGVQDILARGHLEHH-D- 262 (750)
T ss_pred eccCcEEEEEEEEEecCccceEeecCCCcccchhhhhHHhhcCCCCc--HHHHHhhhheeeeHHHHHHHHHhhhccc-c-
Confidence 223 456678888877777888875421 00 0 0124777531 45554 689998888765430 0 00 1
Q ss_pred CCCCcEEEECCchhhHHHHHHHH-HhhcCC-----CC--CCCcEEEEEcCCCCcc
Q 011755 406 GDGNLVFIANDWHTALLPVYLKA-YYRDNG-----LM--QYTRSLLVIHNIAHQI 452 (478)
Q Consensus 406 g~~PDIIHaHDWhTALaPvyLK~-~y~~~~-----~f--~~iptVfTIHNLayQG 452 (478)
..+.+.|.||=|.+++..=+-. .....+ .+ ..--++||.|-+---|
T Consensus 263 -~~~~~~~lNdtHpa~~i~ElmRll~d~~g~~~~~A~~~~~~~~~yTnHTplpea 316 (750)
T COG0058 263 -LDVLADHLNDTHPALAIPELMRLLIDEEGLSWDEAWEIVRKTFVYTNHTPLPEA 316 (750)
T ss_pred -ccchhhhhcCCChhHhHHHHHHHHHHHhcCCHHHHHHHHhheeeeecCCCchhh
Confidence 3567899999999987654432 111111 01 1235789999875444
No 75
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=83.91 E-value=1.4 Score=44.90 Aligned_cols=36 Identities=42% Similarity=0.554 Sum_probs=28.8
Q ss_pred ceEEEEecccCCccccCcHHHHH--hHHHHHHHHCCCeEEEEeeCC
Q 011755 278 MNVILVAAECGPWSKTGGLGDVA--GALPKALARRGHRVMVVAPHY 321 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVV--gsLPkALa~~GheV~VItP~Y 321 (478)
||||+++. |+.|++. -.|.++|+++||+|+++++.+
T Consensus 1 mrIl~~~~--------p~~GHv~P~l~la~~L~~rGh~V~~~t~~~ 38 (401)
T cd03784 1 MRVLITTI--------GSRGDVQPLVALAWALRAAGHEVRVATPPE 38 (401)
T ss_pred CeEEEEeC--------CCcchHHHHHHHHHHHHHCCCeEEEeeCHh
Confidence 89999984 4556554 467788999999999999874
No 76
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=80.65 E-value=4.5 Score=40.25 Aligned_cols=51 Identities=4% Similarity=-0.164 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhcccCCCCCccCCCCCcEEEECC-chhhHHHHHHHHHhhcCCCCCCCcEEEEEcCC
Q 011755 382 KRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIAND-WHTALLPVYLKAYYRDNGLMQYTRSLLVIHNI 448 (478)
Q Consensus 382 ~RFafFskAaLEll~~~~~g~~~~g~~PDIIHaHD-WhTALaPvyLK~~y~~~~~f~~iptVfTIHNL 448 (478)
.+...........++. .+|||||+|. |.+++++++... + .++|+|++.|++
T Consensus 71 ~~~~~~~~~l~~~l~~---------~~pDvV~~~g~~~~~~~~~~aa~-~------~~iPvv~~~~g~ 122 (363)
T cd03786 71 AQTAGLLIGLEAVLLE---------EKPDLVLVLGDTNETLAAALAAF-K------LGIPVAHVEAGL 122 (363)
T ss_pred HHHHHHHHHHHHHHHH---------hCCCEEEEeCCchHHHHHHHHHH-H------cCCCEEEEeccc
Confidence 3334444555555543 3799999996 445555444433 2 268999877764
No 77
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=79.95 E-value=2 Score=45.76 Aligned_cols=41 Identities=22% Similarity=0.348 Sum_probs=32.4
Q ss_pred eEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeC
Q 011755 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (478)
Q Consensus 279 kIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~ 320 (478)
+|++|+==++||+ +||..--+..|=+.|-+.-..|..|.+.
T Consensus 1 ~v~l~~egtyp~~-~ggvs~w~~~~i~~~p~~~f~~~~~~~~ 41 (475)
T cd03813 1 DVCLVLEGTYPYV-RGGVSSWVHQLITGLPEHTFAVVFIGAD 41 (475)
T ss_pred CeEEEEecCCCCc-CCchhHHHHHHHhhCCCceEEEEEEecC
Confidence 3666766688988 8999999999998887776777777654
No 78
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=79.14 E-value=3.7 Score=35.47 Aligned_cols=28 Identities=46% Similarity=0.647 Sum_probs=21.7
Q ss_pred cCcHHHHH--hHHHHHHHHCCCeEEEEeeC
Q 011755 293 TGGLGDVA--GALPKALARRGHRVMVVAPH 320 (478)
Q Consensus 293 tGGLGDVV--gsLPkALa~~GheV~VItP~ 320 (478)
.|.-|||- -+|.++|+++||||++.++.
T Consensus 6 ~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~ 35 (139)
T PF03033_consen 6 GGTRGHVYPFLALARALRRRGHEVRLATPP 35 (139)
T ss_dssp ESSHHHHHHHHHHHHHHHHTT-EEEEEETG
T ss_pred cCChhHHHHHHHHHHHHhccCCeEEEeecc
Confidence 46677774 56789999999999999875
No 79
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=76.00 E-value=4.8 Score=43.45 Aligned_cols=55 Identities=18% Similarity=0.187 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcccCCCCCccCCCCCcEEEECCchhhHHHHHHHHHhhcCCCCCCCcEEEEEcCCCCccccccccccc
Q 011755 385 VLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQICQDITWTFS 461 (478)
Q Consensus 385 afFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhTALaPvyLK~~y~~~~~f~~iptVfTIHNLayQG~fp~~~~~s 461 (478)
-.|+.++++.... -|+|.+||.|-.|+|.+|+... ...++.|..|- .||..+.|.
T Consensus 115 ~~fA~~i~~~~~~-----------~d~vwvhDYhl~l~p~~lr~~~------~~~~igfFlHi-----pfP~~e~f~ 169 (456)
T TIGR02400 115 RLFAEALAPLLQP-----------GDIVWVHDYHLMLLPAMLRELG------VQNKIGFFLHI-----PFPSSEIYR 169 (456)
T ss_pred HHHHHHHHHhCCC-----------CCEEEEecchhhHHHHHHHhhC------CCCeEEEEEeC-----CCCChHHHh
Confidence 4688888886642 3899999999999999998753 34788899993 255555443
No 80
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=74.37 E-value=37 Score=35.14 Aligned_cols=29 Identities=21% Similarity=0.270 Sum_probs=22.0
Q ss_pred CcHHHH---HhHHHHHHHHCCCeEEEEeeCCC
Q 011755 294 GGLGDV---AGALPKALARRGHRVMVVAPHYG 322 (478)
Q Consensus 294 GGLGDV---VgsLPkALa~~GheV~VItP~Yg 322 (478)
||=|-| +-+|.++|.++||+|.++.-.++
T Consensus 9 GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~ 40 (352)
T PRK12446 9 GGSAGHVTPNLAIIPYLKEDNWDISYIGSHQG 40 (352)
T ss_pred CCcHHHHHHHHHHHHHHHhCCCEEEEEECCCc
Confidence 555555 45888999999999999975554
No 81
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=74.08 E-value=42 Score=35.44 Aligned_cols=111 Identities=23% Similarity=0.172 Sum_probs=68.3
Q ss_pred cCcHHHHHhHHHHHHHHCCCe-EEEEeeCCCCCCCCCCCcceEEEEeCCcceEEEEEEEEECCeeEEEccCccccccCCC
Q 011755 293 TGGLGDVAGALPKALARRGHR-VMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNN 371 (478)
Q Consensus 293 tGGLGDVVgsLPkALa~~Ghe-V~VItP~Yg~i~~~~~~~i~~~~~v~G~~~~v~V~~~~idGV~vyFId~p~fF~r~~~ 371 (478)
|||-=-.+-+|.++|.++|++ |.++--.++ .+. +-....|+.+++|+...+.. ..
T Consensus 10 TGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~--~e~--------------------~l~~~~~~~~~~I~~~~~~~--~~ 65 (357)
T COG0707 10 TGGHVFPALALAEELAKRGWEQVIVLGTGDG--LEA--------------------FLVKQYGIEFELIPSGGLRR--KG 65 (357)
T ss_pred CccchhHHHHHHHHHHhhCccEEEEeccccc--cee--------------------eeccccCceEEEEecccccc--cC
Confidence 788888889999999999996 444421111 110 00111267788888776542 11
Q ss_pred cCCCCcccHHHHHHHHHHHHHH---hcccCCCCCccCCCCCcEEEECCchhhHHHHHHHHHhhcCCCCCCCcEEEEEcCC
Q 011755 372 IYGGGREDILKRMVLFCKAAIE---IPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNI 448 (478)
Q Consensus 372 IYg~~~~Dn~~RFafFskAaLE---ll~~~~~g~~~~g~~PDIIHaHDWhTALaPvyLK~~y~~~~~f~~iptVfTIHNL 448 (478)
.+ .+..+...+.+++.+ ++++ .+||+|-+=-+..+.-|.+.... .++|+++.--|.
T Consensus 66 ~~-----~~~~~~~~~~~~~~~a~~il~~---------~kPd~vig~Ggyvs~P~~~Aa~~-------~~iPv~ihEqn~ 124 (357)
T COG0707 66 SL-----KLLKAPFKLLKGVLQARKILKK---------LKPDVVIGTGGYVSGPVGIAAKL-------LGIPVIIHEQNA 124 (357)
T ss_pred cH-----HHHHHHHHHHHHHHHHHHHHHH---------cCCCEEEecCCccccHHHHHHHh-------CCCCEEEEecCC
Confidence 22 133333445555544 4443 37999999888887777766543 358999887776
No 82
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=64.96 E-value=11 Score=34.17 Aligned_cols=41 Identities=29% Similarity=0.352 Sum_probs=28.9
Q ss_pred ceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCC
Q 011755 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHY 321 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Y 321 (478)
|||+|+- -|+.+.--=.|-.-+|-.+-+++||+|.++.|.-
T Consensus 1 Mki~fvm---Dpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~d 41 (119)
T PF02951_consen 1 MKIAFVM---DPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGD 41 (119)
T ss_dssp -EEEEEE---S-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGG
T ss_pred CeEEEEe---CCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCc
Confidence 8999997 5665555557899999999999999999999863
No 83
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=62.90 E-value=15 Score=37.81 Aligned_cols=33 Identities=27% Similarity=0.510 Sum_probs=22.8
Q ss_pred EEEEecccCCccccCcHHHHHhHHHHHHHHC-CC--eEEEE
Q 011755 280 VILVAAECGPWSKTGGLGDVAGALPKALARR-GH--RVMVV 317 (478)
Q Consensus 280 IL~VSsE~aPfaKtGGLGDVVgsLPkALa~~-Gh--eV~VI 317 (478)
||++|+.+ =||---++.+|-++|.++ |. +|.|+
T Consensus 1 ilils~~~-----G~GH~~aa~al~~~~~~~~~~~~~v~~~ 36 (382)
T PLN02605 1 VLILMSDT-----GGGHRASAEAIKDAFQLEFGDEYQVFIV 36 (382)
T ss_pred CEEEEEcC-----CcChHHHHHHHHHHHHhhcCCCeeEEEE
Confidence 56677651 248889999999999875 54 45554
No 84
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=59.15 E-value=91 Score=36.77 Aligned_cols=30 Identities=30% Similarity=0.400 Sum_probs=26.7
Q ss_pred cCcHHHHHhHHHHHHHHCCCeEEEEeeCCC
Q 011755 293 TGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (478)
Q Consensus 293 tGGLGDVVgsLPkALa~~GheV~VItP~Yg 322 (478)
-||||..+++.-++++.+|.-..=+--+|.
T Consensus 106 nGGLGrLAacfldS~AtLglP~~G~GirY~ 135 (797)
T cd04300 106 NGGLGRLAACFLDSLATLGLPGYGYGIRYE 135 (797)
T ss_pred CCCcchhHHHHHHHHHhCCCCeEEEEeccc
Confidence 799999999999999999988877777774
No 85
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=56.52 E-value=15 Score=32.10 Aligned_cols=36 Identities=6% Similarity=-0.049 Sum_probs=27.7
Q ss_pred CCcEEEECCchhhHHHHHHHHHhhcCCCCCCCcEEEEEcCC
Q 011755 408 GNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNI 448 (478)
Q Consensus 408 ~PDIIHaHDWhTALaPvyLK~~y~~~~~f~~iptVfTIHNL 448 (478)
+.||||+|--.++|..=.+.+.. .-++|+|||=|+|
T Consensus 50 ~I~IVHgH~a~S~l~hE~i~hA~-----~mGlktVfTDHSL 85 (90)
T PF08288_consen 50 RIDIVHGHQAFSTLCHEAILHAR-----TMGLKTVFTDHSL 85 (90)
T ss_pred CeeEEEeehhhhHHHHHHHHHHH-----hCCCcEEeecccc
Confidence 67999999998888765554432 1368999999997
No 86
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=56.41 E-value=1e+02 Score=36.33 Aligned_cols=31 Identities=26% Similarity=0.438 Sum_probs=26.9
Q ss_pred ccCcHHHHHhHHHHHHHHCCCeEEEEeeCCC
Q 011755 292 KTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (478)
Q Consensus 292 KtGGLGDVVgsLPkALa~~GheV~VItP~Yg 322 (478)
--||||..+++.-++++.+|.-..=+--+|.
T Consensus 111 GnGGLGrLAacfldS~AtL~lP~~GyGirY~ 141 (798)
T PRK14985 111 GNGGLGRLAACFLDSMATVGQPATGYGLNYQ 141 (798)
T ss_pred CCcchHHHHHHHHHHHHhCCCCeEEEEeccC
Confidence 3799999999999999999988777776664
No 87
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=55.87 E-value=17 Score=35.22 Aligned_cols=40 Identities=38% Similarity=0.456 Sum_probs=28.1
Q ss_pred ceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCCC
Q 011755 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNY 324 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~i 324 (478)
||||+.--- |=-+.-..+|-++|++.||+|.|+.|...+-
T Consensus 1 M~ILlTNDD-------Gi~a~Gi~aL~~~L~~~g~~V~VvAP~~~~S 40 (196)
T PF01975_consen 1 MRILLTNDD-------GIDAPGIRALAKALSALGHDVVVVAPDSEQS 40 (196)
T ss_dssp SEEEEE-SS--------TTSHHHHHHHHHHTTTSSEEEEEEESSSTT
T ss_pred CeEEEEcCC-------CCCCHHHHHHHHHHHhcCCeEEEEeCCCCCc
Confidence 777776643 1123446788889977889999999997643
No 88
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=55.82 E-value=42 Score=37.73 Aligned_cols=35 Identities=14% Similarity=0.126 Sum_probs=27.5
Q ss_pred CCcEEEECCchhhHHHHHHHHHhhcCCCCCCCcEEEEEcCCC
Q 011755 408 GNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIA 449 (478)
Q Consensus 408 ~PDIIHaHDWhTALaPvyLK~~y~~~~~f~~iptVfTIHNLa 449 (478)
.||+||.|==-.++++.+|.... +++-++|-|.|+
T Consensus 401 ~PdlI~GnYsDgnlvA~LLs~~l-------gv~~~~iaHsLe 435 (550)
T PF00862_consen 401 KPDLIIGNYSDGNLVASLLSRKL-------GVTQCFIAHSLE 435 (550)
T ss_dssp --SEEEEEHHHHHHHHHHHHHHH-------T-EEEEE-SS-H
T ss_pred CCcEEEeccCcchHHHHHHHhhc-------CCceehhhhccc
Confidence 58999999999999999999876 599999999995
No 89
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=54.90 E-value=23 Score=39.27 Aligned_cols=66 Identities=17% Similarity=0.137 Sum_probs=47.5
Q ss_pred CcccHHHHH-HHHHHHHHHhcccCCCCCccCCCCCcEEEECCchhhHHHHHHHHHhhcCCCCCCCcEEEEEcCCCCcccc
Q 011755 376 GREDILKRM-VLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQICQ 454 (478)
Q Consensus 376 ~~~Dn~~RF-afFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhTALaPvyLK~~y~~~~~f~~iptVfTIHNLayQG~f 454 (478)
++.++..++ -.|+.++++..+. -|+|=.||.|--|+|.+|+... ...++.|.+|- .|
T Consensus 125 ~~w~~Y~~vN~~FAd~i~~~~~~-----------gDiIWVhDYhL~L~P~mlR~~~------~~~~IgfFlHi-----Pf 182 (486)
T COG0380 125 NWWDAYVKVNRKFADKIVEIYEP-----------GDIIWVHDYHLLLVPQMLRERI------PDAKIGFFLHI-----PF 182 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC-----------CCEEEEEechhhhhHHHHHHhC------CCceEEEEEeC-----CC
Confidence 344444554 4688888876653 2999999999999999998754 24689999996 36
Q ss_pred ccccccccc
Q 011755 455 DITWTFSNC 463 (478)
Q Consensus 455 p~~~~~s~~ 463 (478)
|..+.|-++
T Consensus 183 PssEvfr~l 191 (486)
T COG0380 183 PSSEVFRCL 191 (486)
T ss_pred CCHHHHhhC
Confidence 766665543
No 90
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=54.20 E-value=18 Score=34.96 Aligned_cols=32 Identities=31% Similarity=0.548 Sum_probs=26.8
Q ss_pred CccccCcHHHHHhHHHHHHHHCCCeEEEEeeCC
Q 011755 289 PWSKTGGLGDVAGALPKALARRGHRVMVVAPHY 321 (478)
Q Consensus 289 PfaKtGGLGDVVgsLPkALa~~GheV~VItP~Y 321 (478)
..+-+|| |+++....+.|.+.|++|+||.|.+
T Consensus 12 ~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 12 RVVIVGG-GKVAGRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred EEEEECC-CHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 3333555 9999999999999999999999875
No 91
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=53.74 E-value=25 Score=34.05 Aligned_cols=130 Identities=16% Similarity=0.162 Sum_probs=69.4
Q ss_pred ceEEEEecccCCccccCcHHHHHhHHHHHHHHCC--CeEEEEeeCCCCCCCCCCCcceEEEEeCCcceEEEEEEEEECCe
Q 011755 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRG--HRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGV 355 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~G--heV~VItP~Yg~i~~~~~~~i~~~~~v~G~~~~v~V~~~~idGV 355 (478)
|||+++++ |-|....+|-+++.+.+ ++|.++++.-..... .. .....|+
T Consensus 2 ~ki~vl~s---------g~gs~~~~ll~~~~~~~~~~~I~~vvs~~~~~~~-~~-------------------~a~~~gI 52 (200)
T PRK05647 2 KRIVVLAS---------GNGSNLQAIIDACAAGQLPAEIVAVISDRPDAYG-LE-------------------RAEAAGI 52 (200)
T ss_pred ceEEEEEc---------CCChhHHHHHHHHHcCCCCcEEEEEEecCccchH-HH-------------------HHHHcCC
Confidence 88888875 56888889999998865 566665554321100 00 0123477
Q ss_pred eEEEccCccccccCCCcCCCCcccHHHHHHHHHHHHHHhcccCCCCCccCCCCCcEEEECCchhhHHHHHHHHHhhcCCC
Q 011755 356 DFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGL 435 (478)
Q Consensus 356 ~vyFId~p~fF~r~~~IYg~~~~Dn~~RFafFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhTALaPvyLK~~y~~~~~ 435 (478)
+++.++...+-.+. -|..++++++.. ++||+|.+--|.-=+=+-.+.. +.
T Consensus 53 p~~~~~~~~~~~~~----------------~~~~~~~~~l~~---------~~~D~iv~~~~~~ii~~~~l~~-~~---- 102 (200)
T PRK05647 53 PTFVLDHKDFPSRE----------------AFDAALVEALDA---------YQPDLVVLAGFMRILGPTFVSA-YE---- 102 (200)
T ss_pred CEEEECccccCchh----------------HhHHHHHHHHHH---------hCcCEEEhHHhhhhCCHHHHhh-cc----
Confidence 77655443321110 122334444432 3578877777765332223321 11
Q ss_pred CCCCcEEEEEcCC---CCcccccccccccccccccccc
Q 011755 436 MQYTRSLLVIHNI---AHQICQDITWTFSNCMTLLEVS 470 (478)
Q Consensus 436 f~~iptVfTIHNL---ayQG~fp~~~~~s~~~~~~~~~ 470 (478)
.-++.||-- .|.|..|.........+..|++
T Consensus 103 ----~~~iNiHpslLP~yrG~~p~~~ai~~g~~~tG~T 136 (200)
T PRK05647 103 ----GRIINIHPSLLPSFPGLHTHEQALEAGVKVHGCT 136 (200)
T ss_pred ----CCEEEEeCccccCCCCccHHHHHHHcCCCeEEEE
Confidence 125777753 5777777666555544444444
No 92
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=53.52 E-value=12 Score=39.77 Aligned_cols=37 Identities=19% Similarity=0.306 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCccchhhhcCcCCC
Q 011755 98 KKVLAMQKQLLQQISERRKLVSSIKSDIANSEEDEVSYEERENSFSD 144 (478)
Q Consensus 98 ~kvla~q~~ll~qi~er~klvss~~~~~~~~~~~~~~~~~~~~s~~~ 144 (478)
-++||+|+.=|.+||+- +-..|.+.++|+.+..|.++
T Consensus 321 ~~~L~~~~pel~~l~~s----------~~~~e~~~~~~~sss~ssss 357 (407)
T KOG2130|consen 321 ARLLALQRPELADLADS----------THLEESTGLASDSSSDSSSS 357 (407)
T ss_pred HHHHhhcChhHHHHhhh----------hccccccCcccccccccccc
Confidence 36899999999999863 34446677776665554443
No 93
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=52.92 E-value=23 Score=40.40 Aligned_cols=55 Identities=22% Similarity=0.184 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcccCCCCCccCCCCCcEEEECCchhhHHHHHHHHHhhcCCCCCCCcEEEEEcCCCCccccccccccc
Q 011755 385 VLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQICQDITWTFS 461 (478)
Q Consensus 385 afFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhTALaPvyLK~~y~~~~~f~~iptVfTIHNLayQG~fp~~~~~s 461 (478)
-.|+.++++..+. -|+|-.||.|-.|+|.+|+... ...++-|-.|-. ||..+.|.
T Consensus 121 ~~fA~~~~~~~~~-----------~d~vwvhDYhl~l~p~~lr~~~------~~~~igfFlH~p-----fP~~~~f~ 175 (726)
T PRK14501 121 QRFAEAIAAIARP-----------GDVVWVHDYQLMLLPAMLRERL------PDARIGFFLHIP-----FPSFEVFR 175 (726)
T ss_pred HHHHHHHHHhcCC-----------CCEEEEeCchhhhHHHHHHhhC------CCCcEEEEeeCC-----CCChHHHh
Confidence 4688888876642 3899999999999999998643 356888888864 55555443
No 94
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=52.57 E-value=1.7e+02 Score=34.71 Aligned_cols=30 Identities=30% Similarity=0.433 Sum_probs=26.5
Q ss_pred cCcHHHHHhHHHHHHHHCCCeEEEEeeCCC
Q 011755 293 TGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (478)
Q Consensus 293 tGGLGDVVgsLPkALa~~GheV~VItP~Yg 322 (478)
-||||..+++.=+.++.+|.-..=+--+|.
T Consensus 103 nGGLGrLAacfldS~Atl~~P~~GyGirY~ 132 (794)
T TIGR02093 103 NGGLGRLAACFLDSLATLGLPATGYGIRYE 132 (794)
T ss_pred CCchHHHHHHHHHHHHhCCCCeEEEEeeec
Confidence 799999999999999999988877766664
No 95
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=52.52 E-value=12 Score=40.99 Aligned_cols=39 Identities=28% Similarity=0.336 Sum_probs=29.3
Q ss_pred ceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCC
Q 011755 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHY 321 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Y 321 (478)
-|||.+.+=. .+---.+...|.++|+++||+|+|++|..
T Consensus 21 ~kIl~~~P~~-----~~SH~~~~~~l~~~La~rGH~VTvi~p~~ 59 (507)
T PHA03392 21 ARILAVFPTP-----AYSHHSVFKVYVEALAERGHNVTVIKPTL 59 (507)
T ss_pred ccEEEEcCCC-----CCcHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 3677665311 23356788999999999999999999964
No 96
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=51.87 E-value=24 Score=33.05 Aligned_cols=34 Identities=21% Similarity=0.501 Sum_probs=28.5
Q ss_pred ceEEEEecccCCccccCcHHH--HHhHHHHHHHHCCCeEEEE
Q 011755 278 MNVILVAAECGPWSKTGGLGD--VAGALPKALARRGHRVMVV 317 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGD--VVgsLPkALa~~GheV~VI 317 (478)
|||+.|++- .||-|. ++..|+.+|++.|.+|.+|
T Consensus 17 ~kvI~v~s~------kgG~GKTt~a~~LA~~la~~G~rVllI 52 (204)
T TIGR01007 17 IKVLLITSV------KPGEGKSTTSANIAVAFAQAGYKTLLI 52 (204)
T ss_pred CcEEEEecC------CCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 899988864 466664 8999999999999999887
No 97
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=50.90 E-value=52 Score=34.45 Aligned_cols=34 Identities=24% Similarity=0.152 Sum_probs=25.3
Q ss_pred ceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEe
Q 011755 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VIt 318 (478)
.||++++.| |||===-+ +|.++|.++|.+|.++-
T Consensus 6 ~ki~i~aGg------tsGhi~pa-al~~~l~~~~~~~~~~g 39 (385)
T TIGR00215 6 PTIALVAGE------ASGDILGA-GLRQQLKEHYPNARFIG 39 (385)
T ss_pred CeEEEEeCC------ccHHHHHH-HHHHHHHhcCCCcEEEE
Confidence 478888877 66643333 99999999998887774
No 98
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=50.61 E-value=25 Score=35.60 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=26.5
Q ss_pred CCCceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeC
Q 011755 275 ANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (478)
Q Consensus 275 ~~~MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~ 320 (478)
++.|||++|. .|-+-+.|...|++.||+|.++...
T Consensus 3 ~~~m~I~IiG-----------~GaiG~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 3 SETPRIGIIG-----------TGAIGGFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred CcCcEEEEEC-----------CCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 3458988764 5555566777899999999999864
No 99
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=49.46 E-value=23 Score=34.07 Aligned_cols=28 Identities=29% Similarity=0.559 Sum_probs=24.4
Q ss_pred cCcHHHHHhHHHHHHHHCCCeEEEEeeC
Q 011755 293 TGGLGDVAGALPKALARRGHRVMVVAPH 320 (478)
Q Consensus 293 tGGLGDVVgsLPkALa~~GheV~VItP~ 320 (478)
+||.|.+-.+|.+.|++.||+|.++.+.
T Consensus 6 IGG~G~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 6 LGGTGDQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred EcCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 5778999999999999999999987653
No 100
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=47.54 E-value=25 Score=35.45 Aligned_cols=34 Identities=38% Similarity=0.669 Sum_probs=29.3
Q ss_pred ceEEEEecccCCccccCcHHH--HHhHHHHHHHHCCCeEEEE
Q 011755 278 MNVILVAAECGPWSKTGGLGD--VAGALPKALARRGHRVMVV 317 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGD--VVgsLPkALa~~GheV~VI 317 (478)
|||+.|.+= .||.|. ++.+|+-+|+++|..|.+|
T Consensus 1 M~~iai~s~------kGGvG~TTltAnLA~aL~~~G~~VlaI 36 (243)
T PF06564_consen 1 MKVIAIVSP------KGGVGKTTLTANLAWALARLGESVLAI 36 (243)
T ss_pred CcEEEEecC------CCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 788877752 799995 7899999999999999988
No 101
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=46.19 E-value=47 Score=31.84 Aligned_cols=45 Identities=24% Similarity=0.285 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCccCCCCCcEEEEC-CchhhHHHHHHHHHhh
Q 011755 380 ILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIAN-DWHTALLPVYLKAYYR 431 (478)
Q Consensus 380 n~~RFafFskAaLEll~~~~~g~~~~g~~PDIIHaH-DWhTALaPvyLK~~y~ 431 (478)
+.++-+.=+.|++..+.++.. -|+.||||.+| -|--+| +||..+.
T Consensus 42 ~~e~~~~rg~av~~a~~~L~~----~Gf~PDvI~~H~GWGe~L---flkdv~P 87 (171)
T PF12000_consen 42 DFEAAVLRGQAVARAARQLRA----QGFVPDVIIAHPGWGETL---FLKDVFP 87 (171)
T ss_pred cHHHHHHHHHHHHHHHHHHHH----cCCCCCEEEEcCCcchhh---hHHHhCC
Confidence 344444555555554432211 14689999998 577665 7998764
No 102
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=44.88 E-value=40 Score=37.25 Aligned_cols=46 Identities=13% Similarity=0.120 Sum_probs=36.5
Q ss_pred HHHHHHHHHhcccCCCCCccCCCCCcEEEECCchhhHHHHHHHHHhhcCCCCCCCcEEEEEcC
Q 011755 385 VLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHN 447 (478)
Q Consensus 385 afFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhTALaPvyLK~~y~~~~~f~~iptVfTIHN 447 (478)
-.|+.++++..+. -|+|=.||.|--|+|.+|+... ...++-|-.|-
T Consensus 111 ~~FA~~v~~~~~~-----------~D~VWVHDYhL~llp~~LR~~~------~~~~IgFFlHi 156 (474)
T PRK10117 111 ALLADKLLPLLKD-----------DDIIWIHDYHLLPFASELRKRG------VNNRIGFFLHI 156 (474)
T ss_pred HHHHHHHHHhcCC-----------CCEEEEeccHhhHHHHHHHHhC------CCCcEEEEEeC
Confidence 4788888887642 2899999999999999998753 34678888885
No 103
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=43.18 E-value=34 Score=37.51 Aligned_cols=55 Identities=22% Similarity=0.183 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcccCCCCCccCCCCCcEEEECCchhhHHHHHHHHHhhcCCCCCCCcEEEEEcCCCCccccccccccc
Q 011755 385 VLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQICQDITWTFS 461 (478)
Q Consensus 385 afFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhTALaPvyLK~~y~~~~~f~~iptVfTIHNLayQG~fp~~~~~s 461 (478)
-.|+.++++... .-|+|=.||.|=.|+|.+|+... ...++.|-.|- .||..+.|.
T Consensus 129 ~~FA~~i~~~~~-----------~~D~VWVhDYhL~llP~~LR~~~------~~~~IgfFlHi-----PFPs~e~fr 183 (474)
T PF00982_consen 129 RRFADAIAEVYR-----------PGDLVWVHDYHLMLLPQMLRERG------PDARIGFFLHI-----PFPSSEIFR 183 (474)
T ss_dssp HHHHHHHGGG-------------TT-EEEEESGGGTTHHHHHHHTT--------SEEEEEE-S---------HHHHT
T ss_pred HHHHHHHHHhCc-----------CCCEEEEeCCcHHHHHHHHHhhc------CCceEeeEEec-----CCCCHHHHh
Confidence 356777666554 23899999999999999998753 35788888886 366555543
No 104
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=42.85 E-value=47 Score=38.71 Aligned_cols=54 Identities=22% Similarity=0.247 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcccCCCCCccCCCCCcEEEECCchhhHHHHHHHHHhhcCCCCCCCcEEEEEcCCCCcccccccccc
Q 011755 385 VLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQICQDITWTF 460 (478)
Q Consensus 385 afFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhTALaPvyLK~~y~~~~~f~~iptVfTIHNLayQG~fp~~~~~ 460 (478)
-.|+.++++..+. -|+|=.||.|--|+|.+|+... ...++.|..|-- ||..+.|
T Consensus 135 ~~FA~~i~~~~~~-----------~d~vWvhDYhL~llp~~lR~~~------~~~~igfFlHiP-----FPs~e~f 188 (797)
T PLN03063 135 RMFLDVVKENYEE-----------GDVVWCHDYHLMFLPQYLKEYN------NKMKVGWFLHTP-----FPSSEIY 188 (797)
T ss_pred HHHHHHHHHhcCC-----------CCEEEEecchhhhHHHHHHHhC------CCCcEEEEecCC-----CCCHHHH
Confidence 4788888887642 2899999999999999998753 357899999963 5555543
No 105
>PRK14986 glycogen phosphorylase; Provisional
Probab=42.80 E-value=5.2e+02 Score=30.86 Aligned_cols=32 Identities=28% Similarity=0.336 Sum_probs=27.5
Q ss_pred cccCcHHHHHhHHHHHHHHCCCeEEEEeeCCC
Q 011755 291 SKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (478)
Q Consensus 291 aKtGGLGDVVgsLPkALa~~GheV~VItP~Yg 322 (478)
.-.||||..+++.-++++.+|.-..=+--+|.
T Consensus 121 LGnGGLGrLAac~ldS~A~LglP~~G~Gi~Y~ 152 (815)
T PRK14986 121 LGNGGLGRLAACFLDSLATLGLPGRGYGIRYD 152 (815)
T ss_pred CCCcchHHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 34799999999999999999988877777764
No 106
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=42.76 E-value=54 Score=31.56 Aligned_cols=131 Identities=16% Similarity=0.142 Sum_probs=73.0
Q ss_pred ceEEEEecccCCccccCcHHHHHhHHHHHHHHCCC--eEEEEeeCCCCCCCCCCCcceEEEEeCCcceEEEEEEEEECCe
Q 011755 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGH--RVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGV 355 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~Gh--eV~VItP~Yg~i~~~~~~~i~~~~~v~G~~~~v~V~~~~idGV 355 (478)
|||.++++ |=|.....|-+++.+.+. +|.+|++....... .. .....|+
T Consensus 1 ~riail~s---------g~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~~~~-~~-------------------~A~~~gi 51 (190)
T TIGR00639 1 KRIVVLIS---------GNGSNLQAIIDACKEGKIPASVVLVISNKPDAYG-LE-------------------RAAQAGI 51 (190)
T ss_pred CeEEEEEc---------CCChhHHHHHHHHHcCCCCceEEEEEECCccchH-HH-------------------HHHHcCC
Confidence 57776664 678888899999987665 66666665432110 00 0122366
Q ss_pred eEEEccCccccccCCCcCCCCcccHHHHHHHHHHHHHHhcccCCCCCccCCCCCcEEEECCchhhHHHHHHHHHhhcCCC
Q 011755 356 DFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGL 435 (478)
Q Consensus 356 ~vyFId~p~fF~r~~~IYg~~~~Dn~~RFafFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhTALaPvyLK~~y~~~~~ 435 (478)
+++.++...+-++. -|...++++++. .+||++.+-.|.--+-+-++....
T Consensus 52 p~~~~~~~~~~~~~----------------~~~~~~~~~l~~---------~~~D~iv~~~~~~il~~~~l~~~~----- 101 (190)
T TIGR00639 52 PTFVLSLKDFPSRE----------------AFDQAIIEELRA---------HEVDLVVLAGFMRILGPTFLSRFA----- 101 (190)
T ss_pred CEEEECccccCchh----------------hhhHHHHHHHHh---------cCCCEEEEeCcchhCCHHHHhhcc-----
Confidence 66554443332110 122233344432 357888888887666555554311
Q ss_pred CCCCcEEEEEcCC---CCccccccccccccccccccccc
Q 011755 436 MQYTRSLLVIHNI---AHQICQDITWTFSNCMTLLEVST 471 (478)
Q Consensus 436 f~~iptVfTIHNL---ayQG~fp~~~~~s~~~~~~~~~~ 471 (478)
.-++.||-- .|.|..|....+....+..|++.
T Consensus 102 ----~~~iNiHpslLP~yrG~~p~~~ai~~g~~~tGvTi 136 (190)
T TIGR00639 102 ----GRILNIHPSLLPAFPGLHAVEQALEAGVKESGCTV 136 (190)
T ss_pred ----CCEEEEeCCcccCCCCccHHHHHHHcCCCeEEEEE
Confidence 136788853 68887777666666555555543
No 107
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=39.81 E-value=24 Score=34.56 Aligned_cols=28 Identities=25% Similarity=0.491 Sum_probs=24.9
Q ss_pred CcHHHHHhHHHHHHHHCCCeEEEEeeCC
Q 011755 294 GGLGDVAGALPKALARRGHRVMVVAPHY 321 (478)
Q Consensus 294 GGLGDVVgsLPkALa~~GheV~VItP~Y 321 (478)
-|+|.+-..|.+.|.++||+|.+|--..
T Consensus 6 iG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 6 IGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred ECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 4899999999999999999999996543
No 108
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=39.02 E-value=13 Score=39.51 Aligned_cols=28 Identities=32% Similarity=0.323 Sum_probs=22.1
Q ss_pred CcHHHHHhHHHHHHHHCCCeEEEEeeCC
Q 011755 294 GGLGDVAGALPKALARRGHRVMVVAPHY 321 (478)
Q Consensus 294 GGLGDVVgsLPkALa~~GheV~VItP~Y 321 (478)
+.---+...|.++|+++||+|+|++|..
T Consensus 10 ~SH~~~~~~l~~~L~~rGH~VTvl~~~~ 37 (500)
T PF00201_consen 10 YSHFIFMRPLAEELAERGHNVTVLTPSP 37 (500)
T ss_dssp --SHHHHHHHHHHHHHH-TTSEEEHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCceEEEEeec
Confidence 3455678899999999999999999975
No 109
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=38.98 E-value=51 Score=38.87 Aligned_cols=47 Identities=17% Similarity=0.367 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcccCCCCCccCCCCCcEEEECCchhhHHHHHHHHHhhcCCCCCCCcEEEEEcC
Q 011755 385 VLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHN 447 (478)
Q Consensus 385 afFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhTALaPvyLK~~y~~~~~f~~iptVfTIHN 447 (478)
-.|+.++++.++. .-|+|=.||.|--|+|.+|+... ...++-|-.|-
T Consensus 188 ~~FA~~v~~~~~~----------~~d~VWVhDYhL~llP~~LR~~~------~~~~IgfFlHi 234 (854)
T PLN02205 188 KIFADRIMEVINP----------EDDFVWIHDYHLMVLPTFLRKRF------NRVKLGFFLHS 234 (854)
T ss_pred HHHHHHHHHHhCC----------CCCEEEEeCchhhHHHHHHHhhC------CCCcEEEEecC
Confidence 4789999887642 12899999999999999998753 35788888885
No 110
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=38.94 E-value=60 Score=38.80 Aligned_cols=46 Identities=24% Similarity=0.290 Sum_probs=36.5
Q ss_pred HHHHHHHHHhcccCCCCCccCCCCCcEEEECCchhhHHHHHHHHHhhcCCCCCCCcEEEEEcC
Q 011755 385 VLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHN 447 (478)
Q Consensus 385 afFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhTALaPvyLK~~y~~~~~f~~iptVfTIHN 447 (478)
-.|+.++++..+. -|+|=+||.|--|+|.+|+... ...++-|-.|-
T Consensus 219 ~~FA~~i~~~~~~-----------gD~VWVHDYHL~LlP~~LR~~~------p~~~IGfFlHi 264 (934)
T PLN03064 219 QMFADVVNEHYEE-----------GDVVWCHDYHLMFLPKCLKEYN------SNMKVGWFLHT 264 (934)
T ss_pred HHHHHHHHHhcCC-----------CCEEEEecchhhHHHHHHHHhC------CCCcEEEEecC
Confidence 4688888886642 2899999999999999998753 35778888885
No 111
>PLN00198 anthocyanidin reductase; Provisional
Probab=38.50 E-value=56 Score=32.73 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=21.9
Q ss_pred cCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011755 293 TGGLGDVAGALPKALARRGHRVMVVAP 319 (478)
Q Consensus 293 tGGLGDVVgsLPkALa~~GheV~VItP 319 (478)
|||-|=+-..|.++|.++|++|.++..
T Consensus 15 tG~~GfIG~~l~~~L~~~g~~V~~~~r 41 (338)
T PLN00198 15 IGGTGFLASLLIKLLLQKGYAVNTTVR 41 (338)
T ss_pred ECCchHHHHHHHHHHHHCCCEEEEEEC
Confidence 567777777899999999999987753
No 112
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=38.25 E-value=36 Score=34.74 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=36.5
Q ss_pred ceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCC
Q 011755 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHY 321 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Y 321 (478)
|||+|+- -|+....--.|-+..|-.+.+++||+|.++.|..
T Consensus 1 m~~~~~~---~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~ 41 (312)
T TIGR01380 1 LKVAFQM---DPIESINIGKDTTFALMEEAQKRGHELFFYEPGD 41 (312)
T ss_pred CeEEEEe---CCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhh
Confidence 7899887 6777777788999999999999999999999974
No 113
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=37.24 E-value=63 Score=33.47 Aligned_cols=44 Identities=20% Similarity=0.348 Sum_probs=33.4
Q ss_pred cCCCCCCCCCCCCceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011755 265 EEAKPPPLAGANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAP 319 (478)
Q Consensus 265 ~~~~~~~~a~~~~MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP 319 (478)
+.++.|-+.+ ..|+||+ |||=|=+-..|.+.|.++||+|.++.-
T Consensus 10 ~~~~~~~~~~-~~~~IlV----------tGgtGfIG~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 10 ELEREPYWPS-EKLRICI----------TGAGGFIASHIARRLKAEGHYIIASDW 53 (370)
T ss_pred hcCCCCCCCC-CCCEEEE----------ECCccHHHHHHHHHHHhCCCEEEEEEe
Confidence 3445556654 4488875 478888889999999999999998863
No 114
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=36.41 E-value=41 Score=33.39 Aligned_cols=26 Identities=31% Similarity=0.524 Sum_probs=21.4
Q ss_pred cCcHHHHHhHHHHHHHHCCCeEEEEe
Q 011755 293 TGGLGDVAGALPKALARRGHRVMVVA 318 (478)
Q Consensus 293 tGGLGDVVgsLPkALa~~GheV~VIt 318 (478)
|||-|-+-..|.++|.++|++|.++.
T Consensus 6 tGatG~iG~~l~~~L~~~g~~V~~~~ 31 (338)
T PRK10675 6 TGGSGYIGSHTCVQLLQNGHDVVILD 31 (338)
T ss_pred ECCCChHHHHHHHHHHHCCCeEEEEe
Confidence 46667777778899999999999875
No 115
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=36.29 E-value=57 Score=34.36 Aligned_cols=46 Identities=20% Similarity=0.214 Sum_probs=33.9
Q ss_pred ceEEEEecccCCccccCcHH----HHHhHHHHHHHHCCCeEEEEeeCCCC
Q 011755 278 MNVILVAAECGPWSKTGGLG----DVAGALPKALARRGHRVMVVAPHYGN 323 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLG----DVVgsLPkALa~~GheV~VItP~Yg~ 323 (478)
-.|.+.+.-+.|..+-+..+ .+..+|-.|-+++|++|+|++|.++.
T Consensus 230 ~~I~I~t~yf~P~~~~d~~~~~~~~i~~AL~~AAa~RGV~VRILv~~~~~ 279 (369)
T PHA03003 230 KSIDLELLSLVPVIREDDKTTYWPDIYNALIRAAINRGVKVRLLVGSWKK 279 (369)
T ss_pred hEEEEEEeccccEEeeCCCCccHHHHHHHHHHHHHcCCCEEEEEEecCCc
Confidence 46888888888865555543 56667766666799999999998653
No 116
>CHL00194 ycf39 Ycf39; Provisional
Probab=35.71 E-value=47 Score=33.25 Aligned_cols=28 Identities=14% Similarity=0.286 Sum_probs=23.7
Q ss_pred cCcHHHHHhHHHHHHHHCCCeEEEEeeC
Q 011755 293 TGGLGDVAGALPKALARRGHRVMVVAPH 320 (478)
Q Consensus 293 tGGLGDVVgsLPkALa~~GheV~VItP~ 320 (478)
|||=|-+-..|.++|.++||+|+++...
T Consensus 6 tGatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 6 IGATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred ECCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 5777777788999999999999999854
No 117
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=35.64 E-value=68 Score=35.51 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcccCCCCCccCCCCCcEEEECCchhhHHHHHHHHHhhcCCCCCCCcEEEEEcC
Q 011755 385 VLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHN 447 (478)
Q Consensus 385 afFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhTALaPvyLK~~y~~~~~f~~iptVfTIHN 447 (478)
-.|+.++++..+. -|+|=.||.|--|+|.+|+... .+.++-|-.|-
T Consensus 120 ~~FA~~i~~~~~~-----------~d~vWVhDYhL~llp~~LR~~~------~~~~IgfFlHi 165 (487)
T TIGR02398 120 RAFAEAACLEAAE-----------GATVWVHDYNLWLVPGYIRQLR------PDLKIAFFHHT 165 (487)
T ss_pred HHHHHHHHHhcCC-----------CCEEEEecchhhHHHHHHHHhC------CCCeEEEEeeC
Confidence 5788888876542 3899999999999999998743 34677777775
No 118
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=35.49 E-value=54 Score=33.14 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=27.8
Q ss_pred CceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeC
Q 011755 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (478)
Q Consensus 277 ~MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~ 320 (478)
.|||.++ |+|.+-.+|.+.|++.||+|+++-+.
T Consensus 4 ~m~I~ii-----------G~G~~G~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAIL-----------GAGAWGSTLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCEEEEE-----------CccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4787765 67899999999999999999988754
No 119
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=35.07 E-value=1.2e+02 Score=29.98 Aligned_cols=28 Identities=25% Similarity=0.258 Sum_probs=19.6
Q ss_pred eEEEEecccCCccccCcHHHHHhHHHHHHHH
Q 011755 279 NVILVAAECGPWSKTGGLGDVAGALPKALAR 309 (478)
Q Consensus 279 kIL~VSsE~aPfaKtGGLGDVVgsLPkALa~ 309 (478)
||+++- +..+. .||-..++.+|.+.|.+
T Consensus 1 ~i~~~~-~~~~~--~GG~E~~~~~l~~~l~~ 28 (351)
T cd03804 1 KVAIVH-DWLVN--IGGGEKVVEALARLFPD 28 (351)
T ss_pred CEEEEE-ecccc--CCCHHHHHHHHHHhCCC
Confidence 466655 32332 49999999999988854
No 120
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=34.87 E-value=88 Score=28.27 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=31.7
Q ss_pred ceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCe-EEEEeeC
Q 011755 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHR-VMVVAPH 320 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~Ghe-V~VItP~ 320 (478)
|||+++-.- +|| -+-.+.-+-.+.+++.+.||+ |.|+.-.
T Consensus 1 m~~~iv~~~-~Py--~~~~~~~al~~A~aa~~~gh~v~~vFf~~ 41 (128)
T PRK00207 1 MRYAIAVTG-PAY--GTQQASSAYQFAQALLAEGHELVSVFFYQ 41 (128)
T ss_pred CEEEEEEcC-CCC--CCHHHHHHHHHHHHHHhCCCCeeEEEEeh
Confidence 788877665 787 456778889999999999998 5888644
No 121
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=34.32 E-value=54 Score=32.21 Aligned_cols=26 Identities=42% Similarity=0.677 Sum_probs=20.7
Q ss_pred cHHHHHhHHHHHHHHCCCeEEEEeeC
Q 011755 295 GLGDVAGALPKALARRGHRVMVVAPH 320 (478)
Q Consensus 295 GLGDVVgsLPkALa~~GheV~VItP~ 320 (478)
|.|-+-+.+...|++.||+|.++...
T Consensus 7 G~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 7 GAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 34566678888899999999999863
No 122
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=33.67 E-value=41 Score=35.85 Aligned_cols=37 Identities=38% Similarity=0.582 Sum_probs=28.0
Q ss_pred CceEEEEecccCCccccCcHHHHH--hHHHHHHHHCCCeEEEEeeCC
Q 011755 277 VMNVILVAAECGPWSKTGGLGDVA--GALPKALARRGHRVMVVAPHY 321 (478)
Q Consensus 277 ~MkIL~VSsE~aPfaKtGGLGDVV--gsLPkALa~~GheV~VItP~Y 321 (478)
.|||++++- |.+|++. .+|.++|.++||+|+.++...
T Consensus 1 ~mkil~~~~--------~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~ 39 (406)
T COG1819 1 RMKILFVVC--------GAYGHVNPCLALGKELRRRGHEVVFASTGK 39 (406)
T ss_pred CceEEEEec--------cccccccchHHHHHHHHhcCCeEEEEeCHH
Confidence 489998873 3456664 466778999999999998764
No 123
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=33.05 E-value=54 Score=32.42 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=19.9
Q ss_pred cHHHHHhHHHHHHHHCCCeEEEEee
Q 011755 295 GLGDVAGALPKALARRGHRVMVVAP 319 (478)
Q Consensus 295 GLGDVVgsLPkALa~~GheV~VItP 319 (478)
|.|-+-..+...|++.||+|.++..
T Consensus 7 G~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 7 GAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CCCHHHHHHHHHHHHCCCceEEEec
Confidence 4555666777789999999999876
No 124
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=32.55 E-value=99 Score=27.36 Aligned_cols=40 Identities=20% Similarity=0.329 Sum_probs=30.3
Q ss_pred ceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeC
Q 011755 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~ 320 (478)
|||+.|..-.- +.|=-..++..+.+.|.+.|++|.+|-+.
T Consensus 1 Mkilii~gS~r---~~~~t~~l~~~~~~~l~~~g~e~~~i~l~ 40 (152)
T PF03358_consen 1 MKILIINGSPR---KNSNTRKLAEAVAEQLEEAGAEVEVIDLA 40 (152)
T ss_dssp -EEEEEESSSS---TTSHHHHHHHHHHHHHHHTTEEEEEEECT
T ss_pred CEEEEEECcCC---CCCHHHHHHHHHHHHHHHcCCEEEEEecc
Confidence 89999887533 45666777778888888889999999654
No 125
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=32.37 E-value=33 Score=36.09 Aligned_cols=28 Identities=25% Similarity=0.458 Sum_probs=25.3
Q ss_pred cCcHHHHHhHHHHHHHHCCCeEEEEeeC
Q 011755 293 TGGLGDVAGALPKALARRGHRVMVVAPH 320 (478)
Q Consensus 293 tGGLGDVVgsLPkALa~~GheV~VItP~ 320 (478)
+||+|-+-++|.++|.+.||+|.++-+.
T Consensus 104 iGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 104 VGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred EcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 5789999999999999999999999753
No 126
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=31.91 E-value=63 Score=32.20 Aligned_cols=26 Identities=38% Similarity=0.539 Sum_probs=23.3
Q ss_pred cHHHHHhHHHHHHHHCCCeEEEEeeC
Q 011755 295 GLGDVAGALPKALARRGHRVMVVAPH 320 (478)
Q Consensus 295 GLGDVVgsLPkALa~~GheV~VItP~ 320 (478)
|+|-+-++|..+|++.|++|.++-+.
T Consensus 7 G~G~mG~sla~~L~~~g~~V~~~d~~ 32 (279)
T PRK07417 7 GLGLIGGSLGLDLRSLGHTVYGVSRR 32 (279)
T ss_pred eecHHHHHHHHHHHHCCCEEEEEECC
Confidence 58889999999999999999998765
No 127
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=31.68 E-value=1.6e+02 Score=32.60 Aligned_cols=35 Identities=31% Similarity=0.410 Sum_probs=27.1
Q ss_pred ceEEEEecccCCccccCcHHHH-HhHHHHHHHHCCCeEEEEeeC
Q 011755 278 MNVILVAAECGPWSKTGGLGDV-AGALPKALARRGHRVMVVAPH 320 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDV-VgsLPkALa~~GheV~VItP~ 320 (478)
+||++.. +||.|-+ +-.|-+.|.+.|++|+|+|-.
T Consensus 71 k~IllgV--------tGsIAayka~~lvr~L~k~G~~V~VvmT~ 106 (475)
T PRK13982 71 KRVTLII--------GGGIAAYKALDLIRRLKERGAHVRCVLTK 106 (475)
T ss_pred CEEEEEE--------ccHHHHHHHHHHHHHHHhCcCEEEEEECc
Confidence 5677654 5787755 567888899999999999865
No 128
>PRK05246 glutathione synthetase; Provisional
Probab=31.63 E-value=52 Score=33.52 Aligned_cols=41 Identities=24% Similarity=0.270 Sum_probs=36.5
Q ss_pred ceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCC
Q 011755 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHY 321 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Y 321 (478)
|||+|+- .|+.+...-.|-+..|.+|-+++||+|.++.|..
T Consensus 2 ~~~~~~~---~~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~d 42 (316)
T PRK05246 2 MKVAFQM---DPIESINIKKDSTFAMMLEAQRRGHELFYYEPDD 42 (316)
T ss_pred ceEEEEe---CCHHHCCCCCChHHHHHHHHHHcCCEEEEEehhh
Confidence 8999987 6777777778999999999999999999999974
No 129
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=31.33 E-value=69 Score=28.32 Aligned_cols=21 Identities=38% Similarity=0.395 Sum_probs=16.9
Q ss_pred HhHHHHHHHHCCCeEEEEeeC
Q 011755 300 AGALPKALARRGHRVMVVAPH 320 (478)
Q Consensus 300 VgsLPkALa~~GheV~VItP~ 320 (478)
+..+-++|.+.|++|+|++-.
T Consensus 16 ~~~~l~~L~~~g~~v~vv~S~ 36 (129)
T PF02441_consen 16 APDLLRRLKRAGWEVRVVLSP 36 (129)
T ss_dssp HHHHHHHHHTTTSEEEEEESH
T ss_pred HHHHHHHHhhCCCEEEEEECC
Confidence 567778888999999988743
No 130
>PRK10037 cell division protein; Provisional
Probab=31.03 E-value=71 Score=31.14 Aligned_cols=34 Identities=29% Similarity=0.545 Sum_probs=28.4
Q ss_pred ceEEEEecccCCccccCcHHH--HHhHHHHHHHHCCCeEEEE
Q 011755 278 MNVILVAAECGPWSKTGGLGD--VAGALPKALARRGHRVMVV 317 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGD--VVgsLPkALa~~GheV~VI 317 (478)
|||+-|+.. =||.|. .+.+|+-+|+++|++|.||
T Consensus 1 ~~~iav~n~------KGGvGKTT~a~nLA~~La~~G~rVLlI 36 (250)
T PRK10037 1 MAILGLQGV------RGGVGTTSITAALAWSLQMLGENVLVI 36 (250)
T ss_pred CcEEEEecC------CCCccHHHHHHHHHHHHHhcCCcEEEE
Confidence 778777765 688886 4688999999999999988
No 131
>PRK06756 flavodoxin; Provisional
Probab=30.85 E-value=1e+02 Score=27.57 Aligned_cols=36 Identities=11% Similarity=0.280 Sum_probs=30.0
Q ss_pred ceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEe
Q 011755 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VIt 318 (478)
|||+.|- ++.+|--..++..+.+.|.+.|++|.++-
T Consensus 2 mkv~IiY-----~S~tGnTe~vA~~ia~~l~~~g~~v~~~~ 37 (148)
T PRK06756 2 SKLVMIF-----ASMSGNTEEMADHIAGVIRETENEIEVID 37 (148)
T ss_pred ceEEEEE-----ECCCchHHHHHHHHHHHHhhcCCeEEEee
Confidence 7877665 34589999999999999999999997763
No 132
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=30.32 E-value=38 Score=28.90 Aligned_cols=28 Identities=36% Similarity=0.635 Sum_probs=24.9
Q ss_pred cCcHHHHHhHHHHHHHHCCCeEEEEeeCC
Q 011755 293 TGGLGDVAGALPKALARRGHRVMVVAPHY 321 (478)
Q Consensus 293 tGGLGDVVgsLPkALa~~GheV~VItP~Y 321 (478)
+|| |.++..-.+.|.+.|.+|+|+.|.-
T Consensus 13 vGg-G~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 13 VGG-GPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp EEE-SHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred ECC-CHHHHHHHHHHHhCCCEEEEECCch
Confidence 455 8999999999999999999999974
No 133
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=30.11 E-value=90 Score=35.50 Aligned_cols=34 Identities=6% Similarity=-0.140 Sum_probs=23.0
Q ss_pred CCCcEEEECCchhhHHHHHHHHHhhcCCCCCCCcEE-EEEcC
Q 011755 407 DGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSL-LVIHN 447 (478)
Q Consensus 407 ~~PDIIHaHDWhTALaPvyLK~~y~~~~~f~~iptV-fTIHN 447 (478)
.+|||||+|+-.+.+...+.... .++|++ .++|.
T Consensus 279 ~rpDIVHt~~~~a~l~g~laA~l-------agvpviv~~~h~ 313 (578)
T PRK15490 279 RKLDYLSVWQDGACLMIALAALI-------AGVPRIQLGLRG 313 (578)
T ss_pred cCCCEEEEcCcccHHHHHHHHHh-------cCCCEEEEeecc
Confidence 47999999997776665544421 257774 55776
No 134
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=30.02 E-value=73 Score=32.19 Aligned_cols=26 Identities=31% Similarity=0.572 Sum_probs=22.6
Q ss_pred cHHHHHhHHHHHHHHCCCeEEEEeeC
Q 011755 295 GLGDVAGALPKALARRGHRVMVVAPH 320 (478)
Q Consensus 295 GLGDVVgsLPkALa~~GheV~VItP~ 320 (478)
|||.+-..|.+.|++.||+|.++-+.
T Consensus 7 GlG~mG~~la~~L~~~g~~V~~~dr~ 32 (298)
T TIGR00872 7 GLGRMGANIVRRLAKRGHDCVGYDHD 32 (298)
T ss_pred cchHHHHHHHHHHHHCCCEEEEEECC
Confidence 68999999999999999999886543
No 135
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=29.62 E-value=82 Score=33.22 Aligned_cols=40 Identities=30% Similarity=0.399 Sum_probs=32.2
Q ss_pred CceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCC
Q 011755 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN 323 (478)
Q Consensus 277 ~MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~ 323 (478)
..+||+... ..|--.....|.+.|+++||+|++++|.+..
T Consensus 6 ~~~il~~~p-------~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~ 45 (496)
T KOG1192|consen 6 AHNILVPFP-------GQSHLNPMLQLAKRLAERGHNVTVVTPSFNA 45 (496)
T ss_pred ceeEEEECC-------cccHHHHHHHHHHHHHHcCCceEEEEeechh
Confidence 345665554 5678888999999999999999999998753
No 136
>PRK06753 hypothetical protein; Provisional
Probab=29.44 E-value=71 Score=32.31 Aligned_cols=30 Identities=30% Similarity=0.639 Sum_probs=22.0
Q ss_pred ceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEe
Q 011755 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VIt 318 (478)
|+|++|. ||++-.+.++ +|+++|++|.|+=
T Consensus 1 ~~V~IvG---------gG~aGl~~A~--~L~~~g~~v~v~E 30 (373)
T PRK06753 1 MKIAIIG---------AGIGGLTAAA--LLQEQGHEVKVFE 30 (373)
T ss_pred CEEEEEC---------CCHHHHHHHH--HHHhCCCcEEEEe
Confidence 6788776 3555555544 7999999999874
No 137
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=29.42 E-value=78 Score=29.49 Aligned_cols=28 Identities=32% Similarity=0.342 Sum_probs=22.0
Q ss_pred cCcHHHHHhHHHHHHHHCCCeEEEEeeC
Q 011755 293 TGGLGDVAGALPKALARRGHRVMVVAPH 320 (478)
Q Consensus 293 tGGLGDVVgsLPkALa~~GheV~VItP~ 320 (478)
+||-|-+-.+|.++|+++|++|.++..+
T Consensus 7 tGa~g~iG~~l~~~l~~~g~~v~~~~~~ 34 (247)
T PRK09730 7 TGGSRGIGRATALLLAQEGYTVAVNYQQ 34 (247)
T ss_pred eCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 5677777778999999999999876433
No 138
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=29.20 E-value=67 Score=32.06 Aligned_cols=44 Identities=16% Similarity=0.274 Sum_probs=31.3
Q ss_pred ceEEEEecccC--CccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCC
Q 011755 278 MNVILVAAECG--PWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (478)
Q Consensus 278 MkIL~VSsE~a--PfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg 322 (478)
||.+++....- +.+-+|| |+|+..=.+.|.+.|.+|+||.|...
T Consensus 14 ~~~~pi~l~~~~~~VLVVGG-G~VA~RK~~~Ll~~gA~VtVVap~i~ 59 (223)
T PRK05562 14 NKYMFISLLSNKIKVLIIGG-GKAAFIKGKTFLKKGCYVYILSKKFS 59 (223)
T ss_pred CCEeeeEEECCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence 45555444433 4455565 78888877889999999999999763
No 139
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=28.73 E-value=81 Score=31.37 Aligned_cols=26 Identities=42% Similarity=0.534 Sum_probs=21.4
Q ss_pred cHHHHHhHHHHHHHHCCCeEEEEeeC
Q 011755 295 GLGDVAGALPKALARRGHRVMVVAPH 320 (478)
Q Consensus 295 GLGDVVgsLPkALa~~GheV~VItP~ 320 (478)
|+|-+-..+...|++.||+|.++.+.
T Consensus 8 G~G~mG~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 8 GAGSWGTALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 46777788888999999999988763
No 140
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=28.65 E-value=94 Score=31.22 Aligned_cols=35 Identities=31% Similarity=0.478 Sum_probs=26.6
Q ss_pred ceEEEEecccCCccccCcHHHHHhHHH--HHHHHC--CCeEEEEeeC
Q 011755 278 MNVILVAAECGPWSKTGGLGDVAGALP--KALARR--GHRVMVVAPH 320 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVVgsLP--kALa~~--GheV~VItP~ 320 (478)
||||+|- .+++||++-.+| ++|+++ +.++++++..
T Consensus 1 m~ILii~--------~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~ 39 (322)
T PRK10964 1 MRVLIVK--------TSSMGDVLHTLPALTDAQQAIPGIQFDWVVEE 39 (322)
T ss_pred CeEEEEe--------ccchHHHHhHHHHHHHHHHhCCCCEEEEEECH
Confidence 7888775 579999999987 356664 7788877754
No 141
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=28.40 E-value=73 Score=32.22 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=25.7
Q ss_pred ceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeC
Q 011755 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~ 320 (478)
|||.+| |+|-+-..+...|++.||+|.++...
T Consensus 3 mkI~Ii-----------G~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVL-----------GAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEE-----------CCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 677665 56777788888999999999998753
No 142
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=28.09 E-value=60 Score=29.71 Aligned_cols=24 Identities=38% Similarity=0.666 Sum_probs=20.7
Q ss_pred cHHHHHhHHHHHHHHCCCeEEEEe
Q 011755 295 GLGDVAGALPKALARRGHRVMVVA 318 (478)
Q Consensus 295 GLGDVVgsLPkALa~~GheV~VIt 318 (478)
|||.+-..+.+.|.+.|++|.++=
T Consensus 8 GlG~mG~~~a~~L~~~g~~v~~~d 31 (163)
T PF03446_consen 8 GLGNMGSAMARNLAKAGYEVTVYD 31 (163)
T ss_dssp --SHHHHHHHHHHHHTTTEEEEEE
T ss_pred chHHHHHHHHHHHHhcCCeEEeec
Confidence 799999999999999999999874
No 143
>PRK07236 hypothetical protein; Provisional
Probab=27.95 E-value=93 Score=31.99 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=25.0
Q ss_pred CCCceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011755 275 ANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAP 319 (478)
Q Consensus 275 ~~~MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP 319 (478)
+..++|++|.+ |++=.+.++ +|++.|++|.|+=.
T Consensus 4 ~~~~~ViIVGa---------G~aGl~~A~--~L~~~G~~v~v~E~ 37 (386)
T PRK07236 4 MSGPRAVVIGG---------SLGGLFAAL--LLRRAGWDVDVFER 37 (386)
T ss_pred CCCCeEEEECC---------CHHHHHHHH--HHHhCCCCEEEEec
Confidence 45678888874 555554444 89999999999874
No 144
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=27.93 E-value=91 Score=29.69 Aligned_cols=33 Identities=36% Similarity=0.708 Sum_probs=27.0
Q ss_pred eEEEEecccCCccccCcHHH--HHhHHHHHHHHCCCeEEEE
Q 011755 279 NVILVAAECGPWSKTGGLGD--VAGALPKALARRGHRVMVV 317 (478)
Q Consensus 279 kIL~VSsE~aPfaKtGGLGD--VVgsLPkALa~~GheV~VI 317 (478)
||+.|++- -||.|- ++..|+.+|+++|.+|.+|
T Consensus 2 ~ii~v~s~------kGGvGKTt~a~~lA~~la~~g~~vlli 36 (261)
T TIGR01968 2 RVIVITSG------KGGVGKTTTTANLGTALARLGKKVVLI 36 (261)
T ss_pred eEEEEecC------CCCccHHHHHHHHHHHHHHcCCeEEEE
Confidence 56666653 688887 8899999999999999888
No 145
>CHL00175 minD septum-site determining protein; Validated
Probab=27.89 E-value=1e+02 Score=30.34 Aligned_cols=34 Identities=29% Similarity=0.597 Sum_probs=28.3
Q ss_pred ceEEEEecccCCccccCcHH--HHHhHHHHHHHHCCCeEEEE
Q 011755 278 MNVILVAAECGPWSKTGGLG--DVAGALPKALARRGHRVMVV 317 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLG--DVVgsLPkALa~~GheV~VI 317 (478)
++|+.|++- -||.| .++.+|+.+|++.|.+|.+|
T Consensus 15 ~~vi~v~s~------KGGvGKTt~a~nLA~~La~~g~~vlli 50 (281)
T CHL00175 15 SRIIVITSG------KGGVGKTTTTANLGMSIARLGYRVALI 50 (281)
T ss_pred ceEEEEEcC------CCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 588888763 57887 57899999999999998887
No 146
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=27.84 E-value=79 Score=32.12 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=26.0
Q ss_pred CceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeC
Q 011755 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (478)
Q Consensus 277 ~MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~ 320 (478)
.|||+++. .|++|-+.++ .|++.|++|+++..+
T Consensus 2 ~m~I~IiG--------aGaiG~~~a~---~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILG--------AGSLGSLWAC---RLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEEC--------CCHHHHHHHH---HHHhCCCCeEEEEec
Confidence 38888877 5888876655 478899999999875
No 147
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=27.22 E-value=80 Score=33.74 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=22.4
Q ss_pred cHHHHHhHHHHHHHHCCCeEEEEee
Q 011755 295 GLGDVAGALPKALARRGHRVMVVAP 319 (478)
Q Consensus 295 GLGDVVgsLPkALa~~GheV~VItP 319 (478)
|||-+-..++..|++.||+|.++=.
T Consensus 10 GlG~~G~~~A~~La~~G~~V~~~D~ 34 (415)
T PRK11064 10 GLGYIGLPTAAAFASRQKQVIGVDI 34 (415)
T ss_pred CcchhhHHHHHHHHhCCCEEEEEeC
Confidence 7899999999999999999998854
No 148
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=27.07 E-value=1e+02 Score=33.18 Aligned_cols=36 Identities=33% Similarity=0.591 Sum_probs=29.1
Q ss_pred CCCCceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011755 274 GANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAP 319 (478)
Q Consensus 274 ~~~~MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP 319 (478)
.+..||||. |||=|=+-..|.++|.++|++|.++-.
T Consensus 117 ~~~~mkILV----------TGatGFIGs~Lv~~Ll~~G~~V~~ldr 152 (436)
T PLN02166 117 GRKRLRIVV----------TGGAGFVGSHLVDKLIGRGDEVIVIDN 152 (436)
T ss_pred ccCCCEEEE----------ECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 455689765 677788888899999999999998753
No 149
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=27.03 E-value=70 Score=28.73 Aligned_cols=29 Identities=41% Similarity=0.508 Sum_probs=26.0
Q ss_pred cCcHHHHHhHHHHHHHHCCCeEEEEeeCC
Q 011755 293 TGGLGDVAGALPKALARRGHRVMVVAPHY 321 (478)
Q Consensus 293 tGGLGDVVgsLPkALa~~GheV~VItP~Y 321 (478)
+||=|-+-..|.++|.++|++|++++..-
T Consensus 4 ~GatG~vG~~l~~~L~~~~~~V~~~~R~~ 32 (183)
T PF13460_consen 4 FGATGFVGRALAKQLLRRGHEVTALVRSP 32 (183)
T ss_dssp ETTTSHHHHHHHHHHHHTTSEEEEEESSG
T ss_pred ECCCChHHHHHHHHHHHCCCEEEEEecCc
Confidence 68888888999999999999999999763
No 150
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=26.99 E-value=85 Score=31.87 Aligned_cols=33 Identities=30% Similarity=0.307 Sum_probs=27.0
Q ss_pred CceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeC
Q 011755 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (478)
Q Consensus 277 ~MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~ 320 (478)
.|||.++ |+|.+-..+...|++.||+|+++.+.
T Consensus 4 ~m~I~iI-----------G~G~mG~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVL-----------GAGAWGTALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCeEEEE-----------CcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3777665 56788888889999999999999874
No 151
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=26.82 E-value=98 Score=29.36 Aligned_cols=23 Identities=26% Similarity=0.759 Sum_probs=17.4
Q ss_pred cCcHHHHHhHHHHHHHHCCCeEEEEe
Q 011755 293 TGGLGDVAGALPKALARRGHRVMVVA 318 (478)
Q Consensus 293 tGGLGDVVgsLPkALa~~GheV~VIt 318 (478)
+||+|. +|.+.|.++|++|.++.
T Consensus 9 sg~iG~---~la~~l~~~G~~V~~~~ 31 (248)
T PRK10538 9 TAGFGE---CITRRFIQQGHKVIATG 31 (248)
T ss_pred CchHHH---HHHHHHHHCCCEEEEEE
Confidence 566654 56788999999987764
No 152
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=26.35 E-value=1e+02 Score=32.35 Aligned_cols=36 Identities=39% Similarity=0.554 Sum_probs=29.8
Q ss_pred CCceEEEEecccCCccccCcHHH--HHhHHHHHHHHCCCeEEEE
Q 011755 276 NVMNVILVAAECGPWSKTGGLGD--VAGALPKALARRGHRVMVV 317 (478)
Q Consensus 276 ~~MkIL~VSsE~aPfaKtGGLGD--VVgsLPkALa~~GheV~VI 317 (478)
.+|+|+.|++- -||.|. ++..|+.+|+.+|++|.+|
T Consensus 102 ~~~~vI~v~n~------KGGvGKTT~a~nLA~~La~~G~rVLlI 139 (387)
T TIGR03453 102 EHLQVIAVTNF------KGGSGKTTTAAHLAQYLALRGYRVLAI 139 (387)
T ss_pred CCceEEEEEcc------CCCcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 56899888865 688885 5678889999999999888
No 153
>PRK07454 short chain dehydrogenase; Provisional
Probab=25.89 E-value=1e+02 Score=28.92 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=21.7
Q ss_pred cCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011755 293 TGGLGDVAGALPKALARRGHRVMVVAP 319 (478)
Q Consensus 293 tGGLGDVVgsLPkALa~~GheV~VItP 319 (478)
+||-|.+-..|.+.|.++|++|.++..
T Consensus 12 tG~sg~iG~~la~~l~~~G~~V~~~~r 38 (241)
T PRK07454 12 TGASSGIGKATALAFAKAGWDLALVAR 38 (241)
T ss_pred eCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 466667777888999999999888864
No 154
>PLN02842 nucleotide kinase
Probab=25.89 E-value=1.1e+02 Score=34.35 Aligned_cols=47 Identities=26% Similarity=0.350 Sum_probs=42.4
Q ss_pred CCCCceEEEEecccCC---ccccCcHHHHHhHHHHHHHHCCCeEEEEeeC
Q 011755 274 GANVMNVILVAAECGP---WSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (478)
Q Consensus 274 ~~~~MkIL~VSsE~aP---faKtGGLGDVVgsLPkALa~~GheV~VItP~ 320 (478)
|.+.|+|-++-+|+.| .-.+|+|=.++..+...|++.|-+|.|+.|.
T Consensus 258 g~~r~~~~~~~pel~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~kv~~~~ 307 (505)
T PLN02842 258 GRTRLKVEINIPELNPEMDVYRIGTLMELVRVLALSFADDGKRVKVCVQG 307 (505)
T ss_pred CcceEEEEEecCccccccccccchhHHHHHHHHHHHHhhcCCceEEEecC
Confidence 5577999999999998 3568999999999999999999999999998
No 155
>PRK09271 flavodoxin; Provisional
Probab=25.66 E-value=1.4e+02 Score=27.44 Aligned_cols=35 Identities=31% Similarity=0.420 Sum_probs=28.9
Q ss_pred ceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEE
Q 011755 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVV 317 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VI 317 (478)
|||++|-. +.+|-=..++..|...|.+.|++|.+.
T Consensus 1 mkv~IvY~-----S~tGnTe~~A~~ia~~l~~~g~~v~~~ 35 (160)
T PRK09271 1 MRILLAYA-----SLSGNTREVAREIEERCEEAGHEVDWV 35 (160)
T ss_pred CeEEEEEE-----cCCchHHHHHHHHHHHHHhCCCeeEEE
Confidence 77776653 468999999999999999999998765
No 156
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=25.47 E-value=1e+02 Score=29.30 Aligned_cols=35 Identities=31% Similarity=0.564 Sum_probs=27.5
Q ss_pred ceEEEEecccCCccccCcHHH--HHhHHHHHHHHCCCeEEEEe
Q 011755 278 MNVILVAAECGPWSKTGGLGD--VAGALPKALARRGHRVMVVA 318 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGD--VVgsLPkALa~~GheV~VIt 318 (478)
|||+.|++- -||.|. ++..|+.+|+++|.+|-+|=
T Consensus 1 m~iI~v~s~------KGGvGKTt~a~nla~~la~~g~~VlliD 37 (246)
T TIGR03371 1 MKVIAIVGV------KGGVGKTTLTANLASALKLLGEPVLAID 37 (246)
T ss_pred CcEEEEEeC------CCCccHHHHHHHHHHHHHhCCCcEEEEe
Confidence 677777653 588885 67888999999999998883
No 157
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=25.43 E-value=39 Score=34.61 Aligned_cols=44 Identities=5% Similarity=0.040 Sum_probs=0.0
Q ss_pred HHHHHHHhcccCCCCCccCCCCCcEEEECCchhhHHHHHHHHHhhcCCCCCCCcEEEEEcCC
Q 011755 387 FCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNI 448 (478)
Q Consensus 387 FskAaLEll~~~~~g~~~~g~~PDIIHaHDWhTALaPvyLK~~y~~~~~f~~iptVfTIHNL 448 (478)
+.+.+.+++.. .++|+||+| +..+..|+..... ++|.|+++|++
T Consensus 92 ~~~~l~~~~~~---------~~~D~v~~~---~~~~~~~~~~~~~------~~p~i~~~~d~ 135 (397)
T TIGR03087 92 LARWVNALLAA---------EPVDAIVVF---SSAMAQYVTPHVR------GVPRIVDFVDV 135 (397)
T ss_pred HHHHHHHHHhh---------CCCCEEEEe---ccccceecccccc------CCCeEeehhhH
No 158
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=25.23 E-value=89 Score=31.68 Aligned_cols=24 Identities=38% Similarity=0.618 Sum_probs=21.5
Q ss_pred cHHHHHhHHHHHHHHCCCeEEEEe
Q 011755 295 GLGDVAGALPKALARRGHRVMVVA 318 (478)
Q Consensus 295 GLGDVVgsLPkALa~~GheV~VIt 318 (478)
|||.+-..|.+.|.+.|++|.|+-
T Consensus 7 GlG~MG~~ma~~L~~~G~~v~v~~ 30 (292)
T PRK15059 7 GLGIMGTPMAINLARAGHQLHVTT 30 (292)
T ss_pred ccCHHHHHHHHHHHHCCCeEEEEe
Confidence 699999999999999999998774
No 159
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=25.17 E-value=11 Score=41.90 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=29.0
Q ss_pred EEE-EecccCCccccCcHHHHHhHHHHHH-HHCCCeEEEEeeCCC
Q 011755 280 VIL-VAAECGPWSKTGGLGDVAGALPKAL-ARRGHRVMVVAPHYG 322 (478)
Q Consensus 280 IL~-VSsE~aPfaKtGGLGDVVgsLPkAL-a~~GheV~VItP~Yg 322 (478)
.+| |+||++- ||||+=.|..+-++-- .+.|.+-..+=|...
T Consensus 29 ~lFEvAwEVaN--kVGGIYtVl~sKA~vt~~e~gd~y~l~GP~~e 71 (692)
T KOG3742|consen 29 LLFEVAWEVAN--KVGGIYTVLRSKAKVTTEEWGDNYCLIGPYKE 71 (692)
T ss_pred hhhhhHHHHhh--ccCcEEEEEeccCcccHHHhccceEEeccccc
Confidence 444 8888775 6899888887766544 445878888877654
No 160
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=24.98 E-value=59 Score=33.36 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=20.9
Q ss_pred CcHHHH--HhHHHHHHHHCCCeEEEEeeC
Q 011755 294 GGLGDV--AGALPKALARRGHRVMVVAPH 320 (478)
Q Consensus 294 GGLGDV--VgsLPkALa~~GheV~VItP~ 320 (478)
|+.|++ .-.|.++|+++||+|+++++.
T Consensus 4 p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~ 32 (392)
T TIGR01426 4 PAHGHVNPTLGVVEELVARGHRVTYATTE 32 (392)
T ss_pred CccccccccHHHHHHHHhCCCeEEEEeCH
Confidence 444554 346789999999999999985
No 161
>PRK10818 cell division inhibitor MinD; Provisional
Probab=24.96 E-value=1.2e+02 Score=29.69 Aligned_cols=37 Identities=27% Similarity=0.601 Sum_probs=29.5
Q ss_pred ceEEEEecccCCccccCcHHH--HHhHHHHHHHHCCCeEEEEeeC
Q 011755 278 MNVILVAAECGPWSKTGGLGD--VAGALPKALARRGHRVMVVAPH 320 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGD--VVgsLPkALa~~GheV~VItP~ 320 (478)
|||+-|++- -||.|- ++.+|+.+|+++|.+|.+|==.
T Consensus 2 ~kviav~s~------KGGvGKTt~a~nlA~~la~~g~~vllvD~D 40 (270)
T PRK10818 2 ARIIVVTSG------KGGVGKTTSSAAIATGLAQKGKKTVVIDFD 40 (270)
T ss_pred ceEEEEEeC------CCCCcHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 588888865 688884 7788999999999999888433
No 162
>PLN02501 digalactosyldiacylglycerol synthase
Probab=24.95 E-value=1.8e+02 Score=34.29 Aligned_cols=41 Identities=27% Similarity=0.464 Sum_probs=31.1
Q ss_pred ceEEEEecccCCccccCcHHHHHhHHHH--HHHHC-CCeEEEEeeCCC
Q 011755 278 MNVILVAAECGPWSKTGGLGDVAGALPK--ALARR-GHRVMVVAPHYG 322 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVVgsLPk--ALa~~-GheV~VItP~Yg 322 (478)
-+|.+||.-..||. || ..+--|=+ .|++. |++|+.++|+-.
T Consensus 323 r~~~ivTtAslPWm-TG---tavnpL~rAayLa~~~~~~VtlviPWl~ 366 (794)
T PLN02501 323 RHVAIVTTASLPWM-TG---TAVNPLFRAAYLAKSAKQNVTLLVPWLC 366 (794)
T ss_pred CeEEEEEcccCccc-cc---ccccHHHHHHHhcccCCceEEEEEecCC
Confidence 68999999999996 43 44444433 46777 699999999975
No 163
>PRK09134 short chain dehydrogenase; Provisional
Probab=24.88 E-value=1.4e+02 Score=28.37 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=17.4
Q ss_pred cCcHHHHHhHHHHHHHHCCCeEEEEe
Q 011755 293 TGGLGDVAGALPKALARRGHRVMVVA 318 (478)
Q Consensus 293 tGGLGDVVgsLPkALa~~GheV~VIt 318 (478)
+||+| ..|.+.|++.|++|.++.
T Consensus 18 s~giG---~~la~~l~~~g~~v~~~~ 40 (258)
T PRK09134 18 ARRIG---RAIALDLAAHGFDVAVHY 40 (258)
T ss_pred CcHHH---HHHHHHHHHCCCEEEEEe
Confidence 35555 578888999999987764
No 164
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=24.47 E-value=1.1e+02 Score=29.65 Aligned_cols=33 Identities=39% Similarity=0.648 Sum_probs=26.7
Q ss_pred ceEEEEecccCCccccCcHHH--HHhHHHHHHHHCCCeEEEE
Q 011755 278 MNVILVAAECGPWSKTGGLGD--VAGALPKALARRGHRVMVV 317 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGD--VVgsLPkALa~~GheV~VI 317 (478)
||++-|+ . =||.|. ++..|+-+|+++|.+|.||
T Consensus 1 m~~iav~-~------KGGvGKTT~~~nLA~~La~~G~kVlli 35 (270)
T cd02040 1 MRQIAIY-G------KGGIGKSTTTQNLSAALAEMGKKVMIV 35 (270)
T ss_pred CcEEEEE-e------CCcCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 6776665 2 488885 5788999999999999988
No 165
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=24.42 E-value=76 Score=33.09 Aligned_cols=31 Identities=39% Similarity=0.694 Sum_probs=28.7
Q ss_pred ccCcHHHHHhHHHHHHHHCCCeEEEEeeCCC
Q 011755 292 KTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (478)
Q Consensus 292 KtGGLGDVVgsLPkALa~~GheV~VItP~Yg 322 (478)
.-||+.+.+..+..+|.+.-.+|+|++|.|.
T Consensus 99 TpGG~v~AA~~I~~~l~~~~~~v~v~VP~~A 129 (285)
T PF01972_consen 99 TPGGLVDAAEQIARALREHPAKVTVIVPHYA 129 (285)
T ss_pred CCCCcHHHHHHHHHHHHhCCCCEEEEECccc
Confidence 3599999999999999999899999999985
No 166
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=24.26 E-value=45 Score=35.12 Aligned_cols=28 Identities=32% Similarity=0.321 Sum_probs=26.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhhhhhcc
Q 011755 92 ATIEKSKKVLAMQKQLLQQISERRKLVSSIK 122 (478)
Q Consensus 92 ~tieks~kvla~q~~ll~qi~er~klvss~~ 122 (478)
+|+.|+|+.+--|-++|+++|| ||++=|
T Consensus 186 ttt~ka~~~~~~~~e~l~e~a~---l~~AgK 213 (324)
T COG2144 186 TTTMKAKEKFRAQLELLREGAK---LVKAGK 213 (324)
T ss_pred ceeeccHHHHHHHHHHHHHHHH---HHhhcc
Confidence 4999999999999999999999 998776
No 167
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=24.03 E-value=90 Score=31.78 Aligned_cols=36 Identities=22% Similarity=0.450 Sum_probs=27.4
Q ss_pred ceEEEEecccCCccccCcHHHHHhHHH--HHHHHC--CCeEEEEeeCC
Q 011755 278 MNVILVAAECGPWSKTGGLGDVAGALP--KALARR--GHRVMVVAPHY 321 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVVgsLP--kALa~~--GheV~VItP~Y 321 (478)
||||+|- .++|||++-++| ++|+++ +.++.+++..+
T Consensus 1 mrILii~--------~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~ 40 (348)
T PRK10916 1 MKILVIG--------PSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAW 40 (348)
T ss_pred CcEEEEc--------cCcccHHHhHHHHHHHHHHHCCCCeEEEEechh
Confidence 7887764 679999999988 466664 77888887654
No 168
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=23.96 E-value=68 Score=29.41 Aligned_cols=28 Identities=43% Similarity=0.598 Sum_probs=21.2
Q ss_pred cCCCCCCchhhHHHHHHhhhhHHHHHHHHHHHHHHhhhh
Q 011755 79 EDESGNEPEDSLQATIEKSKKVLAMQKQLLQQISERRKL 117 (478)
Q Consensus 79 ~~~~~d~~e~~~~~tieks~kvla~q~~ll~qi~er~kl 117 (478)
...+.|..|+.++||. +||++|-+|-+|
T Consensus 8 ~tv~~n~~e~I~~at~-----------eLl~~i~~~N~l 35 (118)
T PF07736_consen 8 TTVEENTPEEILEATR-----------ELLEEILERNEL 35 (118)
T ss_dssp EE-SSSSHHHHHHHHH-----------HHHHHHHHHTT-
T ss_pred EecCCCCHHHHHHHHH-----------HHHHHHHHHcCC
Confidence 3346788999999885 699999999877
No 169
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=23.75 E-value=94 Score=30.52 Aligned_cols=28 Identities=18% Similarity=0.112 Sum_probs=24.7
Q ss_pred cCcHHHHH--hHHHHHHHHCCCeEEEEeeC
Q 011755 293 TGGLGDVA--GALPKALARRGHRVMVVAPH 320 (478)
Q Consensus 293 tGGLGDVV--gsLPkALa~~GheV~VItP~ 320 (478)
|||.|-+= -.|-+.|.+.|++|+|++-.
T Consensus 13 TGsiaa~k~a~~lir~L~k~G~~V~vv~T~ 42 (196)
T PRK08305 13 TGSHCTYDEVMPEIEKLVDEGAEVTPIVSY 42 (196)
T ss_pred cCHHHHHHHHHHHHHHHHhCcCEEEEEECH
Confidence 79999885 69999999999999999854
No 170
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=23.70 E-value=1.6e+02 Score=26.40 Aligned_cols=45 Identities=20% Similarity=0.186 Sum_probs=32.2
Q ss_pred ceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCCC
Q 011755 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNY 324 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~i 324 (478)
-.|.+++..+.|-. +..--.+..+|-++.+ +|++|+|++......
T Consensus 35 ~~I~i~~~~~~~~~-~~~~~~l~~~L~~a~~-rGv~V~il~~~~~~~ 79 (176)
T cd00138 35 KSIYIASFYLSPLI-TEYGPVILDALLAAAR-RGVKVRILVDEWSNT 79 (176)
T ss_pred eEEEEEEeEecccc-cccchHHHHHHHHHHH-CCCEEEEEEcccccC
Confidence 46778777666533 2345677788887775 599999999987643
No 171
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=23.69 E-value=1.2e+02 Score=29.72 Aligned_cols=34 Identities=32% Similarity=0.458 Sum_probs=28.4
Q ss_pred ceEEEEecccCCccccCcHHH--HHhHHHHHHHHCCCeEEEE
Q 011755 278 MNVILVAAECGPWSKTGGLGD--VAGALPKALARRGHRVMVV 317 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGD--VVgsLPkALa~~GheV~VI 317 (478)
|+|+.|++. =||.|. .+..|+-+|+++|.+|.||
T Consensus 1 M~iI~v~n~------KGGvGKTT~a~nLA~~la~~G~~Vlli 36 (231)
T PRK13849 1 MKLLTFCSF------KGGAGKTTALMGLCAALASDGKRVALF 36 (231)
T ss_pred CeEEEEECC------CCCccHHHHHHHHHHHHHhCCCcEEEE
Confidence 788888765 699986 5677889999999999888
No 172
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=23.48 E-value=55 Score=29.75 Aligned_cols=33 Identities=39% Similarity=0.554 Sum_probs=24.3
Q ss_pred CCCceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEe
Q 011755 275 ANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (478)
Q Consensus 275 ~~~MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VIt 318 (478)
...|||-+|. -|.|...|.++|.+.||.|.-+.
T Consensus 8 ~~~l~I~iIG-----------aGrVG~~La~aL~~ag~~v~~v~ 40 (127)
T PF10727_consen 8 AARLKIGIIG-----------AGRVGTALARALARAGHEVVGVY 40 (127)
T ss_dssp ----EEEEEC-----------TSCCCCHHHHHHHHTTSEEEEES
T ss_pred CCccEEEEEC-----------CCHHHHHHHHHHHHCCCeEEEEE
Confidence 4568888874 47778999999999999987764
No 173
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=23.30 E-value=1.3e+02 Score=29.57 Aligned_cols=35 Identities=31% Similarity=0.586 Sum_probs=26.1
Q ss_pred ceEEEEecccCCccccCcHHHHHhHH--HHHHHHCCCeEEEEeeCC
Q 011755 278 MNVILVAAECGPWSKTGGLGDVAGAL--PKALARRGHRVMVVAPHY 321 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVVgsL--PkALa~~GheV~VItP~Y 321 (478)
|||+|...= .|+|=++.++ .++| +||+|.+++...
T Consensus 1 MkIl~~v~~-------~G~GH~~R~~~la~~L--rg~~v~~~~~~~ 37 (318)
T PF13528_consen 1 MKILFYVQG-------HGLGHASRCLALARAL--RGHEVTFITSGP 37 (318)
T ss_pred CEEEEEeCC-------CCcCHHHHHHHHHHHH--ccCceEEEEcCC
Confidence 899986642 2788777665 5667 599999999763
No 174
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=23.19 E-value=1.2e+02 Score=30.49 Aligned_cols=35 Identities=23% Similarity=0.427 Sum_probs=27.8
Q ss_pred ceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeC
Q 011755 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~ 320 (478)
|||++++.|..=+ ....|-+||.++||+|.++-|.
T Consensus 1 m~~~i~~~~~s~~--------s~~~~~~a~~~~g~~v~~i~~~ 35 (300)
T PRK10446 1 MKIAILSRDGTLY--------SCKRLREAAIQRGHLVEILDPL 35 (300)
T ss_pred CeEEEEecCCcch--------hHHHHHHHHHHcCCeEEEEehH
Confidence 8999999884332 2457888999999999999765
No 175
>PRK06849 hypothetical protein; Provisional
Probab=23.16 E-value=1.2e+02 Score=31.62 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=27.0
Q ss_pred CCceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeC
Q 011755 276 NVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (478)
Q Consensus 276 ~~MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~ 320 (478)
++|+||+.... +-++-.+.++|.+.|++|.++-..
T Consensus 3 ~~~~VLI~G~~----------~~~~l~iar~l~~~G~~Vi~~d~~ 37 (389)
T PRK06849 3 TKKTVLITGAR----------APAALELARLFHNAGHTVILADSL 37 (389)
T ss_pred CCCEEEEeCCC----------cHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46888887544 336788899999999999998554
No 176
>PRK06924 short chain dehydrogenase; Provisional
Probab=22.86 E-value=1.2e+02 Score=28.65 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=20.7
Q ss_pred cCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011755 293 TGGLGDVAGALPKALARRGHRVMVVAP 319 (478)
Q Consensus 293 tGGLGDVVgsLPkALa~~GheV~VItP 319 (478)
+||-|-.-.++.++|+++|++|.++..
T Consensus 7 tGasggiG~~ia~~l~~~g~~V~~~~r 33 (251)
T PRK06924 7 TGTSQGLGEAIANQLLEKGTHVISISR 33 (251)
T ss_pred ecCCchHHHHHHHHHHhcCCEEEEEeC
Confidence 355566667889999999999887753
No 177
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=22.84 E-value=87 Score=33.03 Aligned_cols=41 Identities=34% Similarity=0.432 Sum_probs=34.2
Q ss_pred eEEEEecccCCccccCcHHH--HHhHHHHHHHHCCCeEEEEeeCCCCC
Q 011755 279 NVILVAAECGPWSKTGGLGD--VAGALPKALARRGHRVMVVAPHYGNY 324 (478)
Q Consensus 279 kIL~VSsE~aPfaKtGGLGD--VVgsLPkALa~~GheV~VItP~Yg~i 324 (478)
.|+.|.. +.+||=|. ++-.|.+.|.++|..|-|++.+|+.-
T Consensus 57 PVIsVGN-----itvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~~ 99 (338)
T PRK01906 57 PVVVVGN-----VTVGGTGKTPTVIALVDALRAAGFTPGVVSRGYGAK 99 (338)
T ss_pred CEEEECC-----ccCCCCChHHHHHHHHHHHHHcCCceEEEecCCCCC
Confidence 4565554 66899886 78899999999999999999999863
No 178
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=22.76 E-value=96 Score=30.47 Aligned_cols=28 Identities=36% Similarity=0.391 Sum_probs=23.6
Q ss_pred cCcHHHHHhHHHHHHHHCCCeEEEEeeC
Q 011755 293 TGGLGDVAGALPKALARRGHRVMVVAPH 320 (478)
Q Consensus 293 tGGLGDVVgsLPkALa~~GheV~VItP~ 320 (478)
|||-|-+-..|.+.|.++|++|+++...
T Consensus 10 tGatGfIG~~l~~~L~~~g~~V~~~~r~ 37 (322)
T PLN02662 10 TGASGYIASWLVKLLLQRGYTVKATVRD 37 (322)
T ss_pred ECChHHHHHHHHHHHHHCCCEEEEEEcC
Confidence 6777888888999999999999987643
No 179
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=22.65 E-value=70 Score=30.25 Aligned_cols=34 Identities=32% Similarity=0.374 Sum_probs=27.1
Q ss_pred cccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCCC
Q 011755 291 SKTGGLGDVAGALPKALARRGHRVMVVAPHYGNY 324 (478)
Q Consensus 291 aKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~i 324 (478)
+.+||=|-+-+.+-++|.+.|++|+++.+.-...
T Consensus 4 lV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~ 37 (275)
T COG0702 4 LVTGATGFVGGAVVRELLARGHEVRAAVRNPEAA 37 (275)
T ss_pred EEEecccchHHHHHHHHHhCCCEEEEEEeCHHHH
Confidence 3467777777888889999999999999986543
No 180
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=22.58 E-value=1e+02 Score=34.41 Aligned_cols=32 Identities=31% Similarity=0.453 Sum_probs=25.0
Q ss_pred ceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeC
Q 011755 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~ 320 (478)
|||+++. ||||-.+.+. .|+++|++|+|+=-+
T Consensus 1 ~rVai~G---------aG~AgL~~a~--~La~~g~~vt~~ea~ 32 (485)
T COG3349 1 MRVAIAG---------AGLAGLAAAY--ELADAGYDVTLYEAR 32 (485)
T ss_pred CeEEEEc---------ccHHHHHHHH--HHHhCCCceEEEecc
Confidence 6777776 4787777665 899999999998544
No 181
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=22.48 E-value=1.3e+02 Score=30.36 Aligned_cols=25 Identities=36% Similarity=0.659 Sum_probs=22.4
Q ss_pred cHHHHHhHHHHHHHHCCCeEEEEee
Q 011755 295 GLGDVAGALPKALARRGHRVMVVAP 319 (478)
Q Consensus 295 GLGDVVgsLPkALa~~GheV~VItP 319 (478)
|||.+-..+.+.|.+.|++|.|+-+
T Consensus 7 GlG~MG~~mA~~L~~~g~~v~v~dr 31 (301)
T PRK09599 7 GLGRMGGNMARRLLRGGHEVVGYDR 31 (301)
T ss_pred cccHHHHHHHHHHHHCCCeEEEEEC
Confidence 7999999999999999999988755
No 182
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=22.24 E-value=84 Score=30.10 Aligned_cols=31 Identities=32% Similarity=0.505 Sum_probs=27.0
Q ss_pred ccCcHHHHHhHHHHHHHHCCCeEEEEeeCCC
Q 011755 292 KTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (478)
Q Consensus 292 KtGGLGDVVgsLPkALa~~GheV~VItP~Yg 322 (478)
-|||-|-+-..|.+.|.++|++|+++...-.
T Consensus 3 VtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 33 (292)
T TIGR01777 3 ITGGTGFIGRALTQRLTKDGHEVTILTRSPP 33 (292)
T ss_pred EEcccchhhHHHHHHHHHcCCEEEEEeCCCC
Confidence 4899999999999999999999999885543
No 183
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=22.23 E-value=81 Score=30.45 Aligned_cols=30 Identities=30% Similarity=0.356 Sum_probs=24.9
Q ss_pred cCcHHHHHhHHHHHHHHCCCeEEEEeeCCC
Q 011755 293 TGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (478)
Q Consensus 293 tGGLGDVVgsLPkALa~~GheV~VItP~Yg 322 (478)
|||-|=+-..|.+.|.++||+|+++.....
T Consensus 6 tG~tGfiG~~l~~~L~~~g~~V~~~~r~~~ 35 (314)
T COG0451 6 TGGAGFIGSHLVERLLAAGHDVRGLDRLRD 35 (314)
T ss_pred EcCcccHHHHHHHHHHhCCCeEEEEeCCCc
Confidence 566666669999999999999999987543
No 184
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.19 E-value=90 Score=28.77 Aligned_cols=28 Identities=32% Similarity=0.367 Sum_probs=20.9
Q ss_pred cCcHHHHHhHHHHHHHHCCCeEEEEeeC
Q 011755 293 TGGLGDVAGALPKALARRGHRVMVVAPH 320 (478)
Q Consensus 293 tGGLGDVVgsLPkALa~~GheV~VItP~ 320 (478)
|||-|-+-.+|.+.|.++|++|.++...
T Consensus 12 tGasg~iG~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 12 TGAARGLGRAIALRLARAGADVVVHYRS 39 (249)
T ss_pred eCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 4566666678888999999998775543
No 185
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=22.18 E-value=80 Score=33.07 Aligned_cols=33 Identities=39% Similarity=0.547 Sum_probs=28.4
Q ss_pred ccCcHHH--HHhHHHHHHHHCCCeEEEEeeCCCCC
Q 011755 292 KTGGLGD--VAGALPKALARRGHRVMVVAPHYGNY 324 (478)
Q Consensus 292 KtGGLGD--VVgsLPkALa~~GheV~VItP~Yg~i 324 (478)
.+||-|. ++-.|.+.|.++|.+|-|+..+|+.-
T Consensus 58 ~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGYg~~ 92 (325)
T PRK00652 58 TVGGTGKTPVVIALAEQLQARGLKPGVVSRGYGGK 92 (325)
T ss_pred eCCCCChHHHHHHHHHHHHHCCCeEEEECCCCCCC
Confidence 4677775 78899999999999999999999763
No 186
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=22.16 E-value=1.3e+02 Score=29.22 Aligned_cols=24 Identities=42% Similarity=0.578 Sum_probs=18.1
Q ss_pred CcHHHHHhHHHHHHHHCCCeEEEEee
Q 011755 294 GGLGDVAGALPKALARRGHRVMVVAP 319 (478)
Q Consensus 294 GGLGDVVgsLPkALa~~GheV~VItP 319 (478)
||+|=.+.++ +|+++|++|.||=.
T Consensus 9 aG~aGl~~A~--~L~~~G~~v~i~E~ 32 (356)
T PF01494_consen 9 AGPAGLAAAL--ALARAGIDVTIIER 32 (356)
T ss_dssp -SHHHHHHHH--HHHHTTCEEEEEES
T ss_pred CCHHHHHHHH--HHHhcccccccchh
Confidence 4666666555 89999999999854
No 187
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=21.98 E-value=1.1e+02 Score=31.35 Aligned_cols=35 Identities=46% Similarity=0.819 Sum_probs=26.9
Q ss_pred ceEEEEecccCCccccCcHHH--HHhHHHHHHHHCCCeEEEEee
Q 011755 278 MNVILVAAECGPWSKTGGLGD--VAGALPKALARRGHRVMVVAP 319 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGD--VVgsLPkALa~~GheV~VItP 319 (478)
|||+|++. -||.|. ++.+++-+++++|.+|-|++-
T Consensus 1 ~r~~~~~G-------KGGVGKTT~aaA~A~~~A~~G~rtLlvS~ 37 (305)
T PF02374_consen 1 MRILFFGG-------KGGVGKTTVAAALALALARRGKRTLLVST 37 (305)
T ss_dssp -SEEEEEE-------STTSSHHHHHHHHHHHHHHTTS-EEEEES
T ss_pred CeEEEEec-------CCCCCcHHHHHHHHHHHhhCCCCeeEeec
Confidence 78888886 589986 556688888999999999964
No 188
>PRK08163 salicylate hydroxylase; Provisional
Probab=21.93 E-value=1.3e+02 Score=30.77 Aligned_cols=32 Identities=47% Similarity=0.793 Sum_probs=24.4
Q ss_pred CceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011755 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAP 319 (478)
Q Consensus 277 ~MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP 319 (478)
+++|++|. ||++-.+.++ +|++.|++|.|+=.
T Consensus 4 ~~~V~IvG---------aGiaGl~~A~--~L~~~g~~v~v~Er 35 (396)
T PRK08163 4 VTPVLIVG---------GGIGGLAAAL--ALARQGIKVKLLEQ 35 (396)
T ss_pred CCeEEEEC---------CcHHHHHHHH--HHHhCCCcEEEEee
Confidence 47888887 4666666555 79999999999843
No 189
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=21.84 E-value=73 Score=32.64 Aligned_cols=26 Identities=35% Similarity=0.532 Sum_probs=23.4
Q ss_pred ccCcHHHHHhHHHHHHHHCCCeEEEE
Q 011755 292 KTGGLGDVAGALPKALARRGHRVMVV 317 (478)
Q Consensus 292 KtGGLGDVVgsLPkALa~~GheV~VI 317 (478)
-++|+|.+-++|.++|++.|+.|.|+
T Consensus 7 ~IvG~GliG~s~a~~l~~~g~~v~i~ 32 (279)
T COG0287 7 GIVGLGLMGGSLARALKEAGLVVRII 32 (279)
T ss_pred EEECCchHHHHHHHHHHHcCCeEEEE
Confidence 35789999999999999999999776
No 190
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=21.62 E-value=92 Score=32.89 Aligned_cols=26 Identities=42% Similarity=0.440 Sum_probs=22.5
Q ss_pred cHHHHHhHHHHHHHHCCCeEEEEeeC
Q 011755 295 GLGDVAGALPKALARRGHRVMVVAPH 320 (478)
Q Consensus 295 GLGDVVgsLPkALa~~GheV~VItP~ 320 (478)
|+|-+-..+...|++.||+|.++-+.
T Consensus 7 GlG~~G~~lA~~La~~G~~V~~~d~~ 32 (411)
T TIGR03026 7 GLGYVGLPLAALLADLGHEVTGVDID 32 (411)
T ss_pred CCCchhHHHHHHHHhcCCeEEEEECC
Confidence 68888899999999999999887553
No 191
>PRK07538 hypothetical protein; Provisional
Probab=21.58 E-value=1.1e+02 Score=31.72 Aligned_cols=30 Identities=40% Similarity=0.723 Sum_probs=22.8
Q ss_pred ceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEe
Q 011755 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VIt 318 (478)
|+|+.|. ||+|-.+.++ +|+++|++|.|+=
T Consensus 1 ~dV~IVG---------aG~aGl~~A~--~L~~~G~~v~v~E 30 (413)
T PRK07538 1 MKVLIAG---------GGIGGLTLAL--TLHQRGIEVVVFE 30 (413)
T ss_pred CeEEEEC---------CCHHHHHHHH--HHHhCCCcEEEEE
Confidence 6777776 4666666665 6999999999884
No 192
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=21.51 E-value=82 Score=32.92 Aligned_cols=42 Identities=31% Similarity=0.453 Sum_probs=34.4
Q ss_pred ceEEEEecccCCccccCcHHH--HHhHHHHHHHHCCCeEEEEeeCCCCC
Q 011755 278 MNVILVAAECGPWSKTGGLGD--VAGALPKALARRGHRVMVVAPHYGNY 324 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGD--VVgsLPkALa~~GheV~VItP~Yg~i 324 (478)
..|+.|.. +.+||=|. ++..|.+.|.++|+.|-|++.+|+.-
T Consensus 35 vpVIsVGN-----ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~~ 78 (326)
T PF02606_consen 35 VPVISVGN-----LTVGGTGKTPLVIWLARLLQARGYRPAILSRGYGRK 78 (326)
T ss_pred CcEEEEcc-----cccCCCCchHHHHHHHHHHHhcCCceEEEcCCCCCC
Confidence 34565554 55788885 78999999999999999999999864
No 193
>PLN02206 UDP-glucuronate decarboxylase
Probab=21.51 E-value=1.2e+02 Score=32.69 Aligned_cols=33 Identities=39% Similarity=0.583 Sum_probs=27.5
Q ss_pred CCceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEe
Q 011755 276 NVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (478)
Q Consensus 276 ~~MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VIt 318 (478)
+.||||. |||-|=+-..|.++|.++|++|.++-
T Consensus 118 ~~~kILV----------TGatGfIGs~Lv~~Ll~~G~~V~~ld 150 (442)
T PLN02206 118 KGLRVVV----------TGGAGFVGSHLVDRLMARGDSVIVVD 150 (442)
T ss_pred CCCEEEE----------ECcccHHHHHHHHHHHHCcCEEEEEe
Confidence 4589774 67888888889999999999999874
No 194
>PLN02778 3,5-epimerase/4-reductase
Probab=21.49 E-value=1.3e+02 Score=30.07 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=24.3
Q ss_pred CCceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEe
Q 011755 276 NVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (478)
Q Consensus 276 ~~MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VIt 318 (478)
..||||. |||=|=+-..|.++|.++|++|.+..
T Consensus 8 ~~~kiLV----------tG~tGfiG~~l~~~L~~~g~~V~~~~ 40 (298)
T PLN02778 8 ATLKFLI----------YGKTGWIGGLLGKLCQEQGIDFHYGS 40 (298)
T ss_pred CCCeEEE----------ECCCCHHHHHHHHHHHhCCCEEEEec
Confidence 3488876 45666666778889999999997643
No 195
>PLN02256 arogenate dehydrogenase
Probab=21.38 E-value=1.5e+02 Score=30.61 Aligned_cols=34 Identities=24% Similarity=0.538 Sum_probs=27.5
Q ss_pred CCceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeC
Q 011755 276 NVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (478)
Q Consensus 276 ~~MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~ 320 (478)
..|+|.+| |+|-+.+++.++|.+.|++|.++-+.
T Consensus 35 ~~~kI~II-----------G~G~mG~slA~~L~~~G~~V~~~d~~ 68 (304)
T PLN02256 35 RKLKIGIV-----------GFGNFGQFLAKTFVKQGHTVLATSRS 68 (304)
T ss_pred CCCEEEEE-----------eeCHHHHHHHHHHHhCCCEEEEEECc
Confidence 34787775 57777889999999999999988766
No 196
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=21.32 E-value=99 Score=32.17 Aligned_cols=41 Identities=37% Similarity=0.524 Sum_probs=33.8
Q ss_pred eEEEEecccCCccccCcHHH--HHhHHHHHHHHCCCeEEEEeeCCCCC
Q 011755 279 NVILVAAECGPWSKTGGLGD--VAGALPKALARRGHRVMVVAPHYGNY 324 (478)
Q Consensus 279 kIL~VSsE~aPfaKtGGLGD--VVgsLPkALa~~GheV~VItP~Yg~i 324 (478)
.|+.|.. +.+||=|. ++..|.+.|.++|..|-|++.+|+.-
T Consensus 29 PVIsVGN-----itvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~~ 71 (311)
T TIGR00682 29 PVVIVGN-----LSVGGTGKTPVVVWLAELLKDRGLRVGVLSRGYGSK 71 (311)
T ss_pred CEEEEec-----cccCCcChHHHHHHHHHHHHHCCCEEEEECCCCCCC
Confidence 4555554 56888885 78999999999999999999999863
No 197
>PLN02712 arogenate dehydrogenase
Probab=21.22 E-value=2.9e+02 Score=31.81 Aligned_cols=34 Identities=24% Similarity=0.526 Sum_probs=28.0
Q ss_pred CCceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeC
Q 011755 276 NVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (478)
Q Consensus 276 ~~MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~ 320 (478)
.+|+|.+| |+|.+.++|.++|.+.|++|.++-+.
T Consensus 51 ~~~kIgII-----------G~G~mG~slA~~L~~~G~~V~~~dr~ 84 (667)
T PLN02712 51 TQLKIAII-----------GFGNYGQFLAKTLISQGHTVLAHSRS 84 (667)
T ss_pred CCCEEEEE-----------ccCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 35888886 57888889999999999999887653
No 198
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=20.76 E-value=73 Score=30.35 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=23.7
Q ss_pred CCCchhhHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q 011755 83 GNEPEDSLQATIEKSKKVLAMQKQLLQQISERRK 116 (478)
Q Consensus 83 ~d~~e~~~~~tieks~kvla~q~~ll~qi~er~k 116 (478)
-||..|..- -.|+++++-|+-+-||+||.|=.
T Consensus 41 ldEEfD~~p--s~~~~~~lr~Rydrlr~va~rvQ 72 (156)
T PF08372_consen 41 LDEEFDTFP--SSRPPDSLRMRYDRLRSVAGRVQ 72 (156)
T ss_pred hhhhhcccc--cccccHHHHHHHHHHHHHHHHHH
Confidence 345445443 35788999999999999999844
No 199
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=20.64 E-value=3.2e+02 Score=28.78 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=22.9
Q ss_pred HHHHhHHHHHHHHCCCeEEEEeeCCCCC
Q 011755 297 GDVAGALPKALARRGHRVMVVAPHYGNY 324 (478)
Q Consensus 297 GDVVgsLPkALa~~GheV~VItP~Yg~i 324 (478)
.-.-..+-+.|.++||+|.|.+..|+..
T Consensus 13 vhfFk~~I~eL~~~GheV~it~R~~~~~ 40 (335)
T PF04007_consen 13 VHFFKNIIRELEKRGHEVLITARDKDET 40 (335)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEeccchH
Confidence 3455678889999999999999988754
No 200
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=20.07 E-value=85 Score=30.53 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=24.8
Q ss_pred cCcHHHHHhHHHHHHHHCCCeEEEEeeCCC
Q 011755 293 TGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (478)
Q Consensus 293 tGGLGDVVgsLPkALa~~GheV~VItP~Yg 322 (478)
+||-|-+-..+.++|.++|++|++++....
T Consensus 5 tGatG~iG~~vv~~L~~~g~~V~~~~R~~~ 34 (285)
T TIGR03649 5 TGGTGKTASRIARLLQAASVPFLVASRSSS 34 (285)
T ss_pred EcCCChHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 677777778888899999999999987643
No 201
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=20.02 E-value=1.1e+02 Score=29.18 Aligned_cols=25 Identities=48% Similarity=0.630 Sum_probs=19.2
Q ss_pred cHHHHHhHHHHHHHHCCCeEEEEee
Q 011755 295 GLGDVAGALPKALARRGHRVMVVAP 319 (478)
Q Consensus 295 GLGDVVgsLPkALa~~GheV~VItP 319 (478)
|||=|-.-++-+|++.||+|..+=.
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~ 31 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDI 31 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeC
Confidence 6777777888899999999998844
No 202
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=20.00 E-value=2.3e+02 Score=27.23 Aligned_cols=32 Identities=22% Similarity=0.272 Sum_probs=22.3
Q ss_pred ceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011755 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAP 319 (478)
Q Consensus 278 MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP 319 (478)
|+||++.+ +|+ +-..|.++|.+.|++|+++..
T Consensus 18 ~~ilItGa-------sG~---iG~~l~~~L~~~g~~V~~~~R 49 (251)
T PLN00141 18 KTVFVAGA-------TGR---TGKRIVEQLLAKGFAVKAGVR 49 (251)
T ss_pred CeEEEECC-------CcH---HHHHHHHHHHhCCCEEEEEec
Confidence 56766543 444 456677788889999988764
Done!