Query 011758
Match_columns 478
No_of_seqs 170 out of 211
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 04:54:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011758.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011758hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05701 WEMBL: Weak chloropla 100.0 1.6E-70 3.5E-75 590.6 60.3 434 23-469 1-448 (522)
2 PF05701 WEMBL: Weak chloropla 99.4 7.1E-08 1.5E-12 105.0 49.9 356 90-464 32-422 (522)
3 TIGR02169 SMC_prok_A chromosom 99.1 8.4E-06 1.8E-10 96.1 51.3 47 73-119 165-211 (1164)
4 TIGR02168 SMC_prok_B chromosom 99.0 3.1E-05 6.7E-10 91.2 47.8 34 87-120 174-207 (1179)
5 TIGR02169 SMC_prok_A chromosom 98.9 0.00013 2.8E-09 86.2 50.5 41 83-123 168-208 (1164)
6 TIGR00606 rad50 rad50. This fa 98.9 0.00045 9.7E-09 83.3 54.5 129 309-441 998-1128(1311)
7 COG1196 Smc Chromosome segrega 98.9 0.00013 2.9E-09 86.7 49.5 57 72-136 166-222 (1163)
8 TIGR02168 SMC_prok_B chromosom 98.9 0.0002 4.4E-09 84.3 47.8 47 73-119 167-213 (1179)
9 PF10174 Cast: RIM-binding pro 98.9 0.00048 1E-08 77.9 47.9 306 64-376 53-389 (775)
10 PRK02224 chromosome segregatio 98.8 0.0011 2.5E-08 76.6 56.2 24 60-83 209-232 (880)
11 COG1196 Smc Chromosome segrega 98.7 0.0021 4.5E-08 76.7 49.9 37 76-112 672-708 (1163)
12 PRK02224 chromosome segregatio 98.7 0.0024 5.1E-08 74.0 56.6 43 70-112 257-299 (880)
13 PF10174 Cast: RIM-binding pro 98.6 0.0023 5E-08 72.5 44.9 21 92-112 39-59 (775)
14 KOG0996 Structural maintenance 98.4 0.01 2.3E-07 68.4 42.0 278 161-468 332-616 (1293)
15 KOG0161 Myosin class II heavy 98.4 0.018 3.9E-07 70.7 55.9 53 328-380 1412-1464(1930)
16 TIGR00606 rad50 rad50. This fa 98.3 0.02 4.3E-07 69.4 51.2 136 304-448 972-1114(1311)
17 KOG0161 Myosin class II heavy 98.3 0.033 7.2E-07 68.5 56.9 75 304-378 1268-1342(1930)
18 PF00261 Tropomyosin: Tropomyo 98.2 0.0047 1E-07 60.8 29.9 85 323-407 134-218 (237)
19 PF00261 Tropomyosin: Tropomyo 98.2 0.0096 2.1E-07 58.6 30.8 113 334-446 117-229 (237)
20 PF07888 CALCOCO1: Calcium bin 98.1 0.026 5.7E-07 61.4 40.1 40 193-232 292-331 (546)
21 KOG0996 Structural maintenance 98.1 0.044 9.6E-07 63.5 40.0 26 60-85 270-295 (1293)
22 KOG0964 Structural maintenance 98.0 0.046 1E-06 62.2 39.4 78 157-234 224-301 (1200)
23 KOG0250 DNA repair protein RAD 98.0 0.043 9.3E-07 63.4 36.6 30 150-179 208-237 (1074)
24 PF07888 CALCOCO1: Calcium bin 97.9 0.064 1.4E-06 58.5 46.0 101 323-433 357-457 (546)
25 KOG0250 DNA repair protein RAD 97.9 0.11 2.4E-06 60.1 37.7 146 63-233 206-351 (1074)
26 PRK03918 chromosome segregatio 97.8 0.12 2.7E-06 59.8 57.9 13 71-83 193-205 (880)
27 KOG4674 Uncharacterized conser 97.8 0.2 4.3E-06 61.2 52.3 169 59-230 914-1085(1822)
28 KOG0977 Nuclear envelope prote 97.8 0.09 2E-06 57.3 32.7 125 73-219 94-218 (546)
29 PF12128 DUF3584: Protein of u 97.7 0.22 4.7E-06 60.0 53.4 101 331-431 601-702 (1201)
30 KOG4674 Uncharacterized conser 97.7 0.26 5.5E-06 60.3 56.1 213 202-424 802-1035(1822)
31 PF00038 Filament: Intermediat 97.6 0.096 2.1E-06 53.2 38.1 264 57-380 18-284 (312)
32 PF09730 BicD: Microtubule-ass 97.6 0.21 4.6E-06 56.4 43.4 380 58-475 28-466 (717)
33 PF01576 Myosin_tail_1: Myosin 97.6 1.6E-05 3.5E-10 91.5 0.0 93 248-344 289-391 (859)
34 KOG0971 Microtubule-associated 97.5 0.27 5.9E-06 55.8 39.1 24 418-441 494-517 (1243)
35 PF00038 Filament: Intermediat 97.3 0.24 5.2E-06 50.3 40.1 39 198-236 89-127 (312)
36 PHA02562 46 endonuclease subun 97.2 0.4 8.7E-06 52.6 29.5 50 247-296 230-281 (562)
37 PF01576 Myosin_tail_1: Myosin 97.2 8.2E-05 1.8E-09 85.7 0.0 190 200-404 344-536 (859)
38 KOG0977 Nuclear envelope prote 97.1 0.63 1.4E-05 50.9 29.6 171 271-445 149-327 (546)
39 PRK04778 septation ring format 96.9 0.96 2.1E-05 50.2 47.4 79 58-138 80-158 (569)
40 KOG0971 Microtubule-associated 96.9 1.2 2.5E-05 51.0 40.1 126 167-297 301-444 (1243)
41 KOG0999 Microtubule-associated 96.9 0.89 1.9E-05 49.3 29.4 209 203-435 6-222 (772)
42 PRK04778 septation ring format 96.9 1.1 2.3E-05 49.9 39.1 160 303-463 257-425 (569)
43 KOG0964 Structural maintenance 96.9 1.3 2.9E-05 51.0 35.9 162 67-236 187-373 (1200)
44 PRK01156 chromosome segregatio 96.9 1.4 3.1E-05 51.3 52.4 24 157-180 357-380 (895)
45 PRK11637 AmiB activator; Provi 96.8 0.94 2E-05 48.4 28.0 42 304-345 175-216 (428)
46 KOG0933 Structural maintenance 96.7 1.7 3.7E-05 50.3 44.7 131 157-296 735-876 (1174)
47 KOG0976 Rho/Rac1-interacting s 96.6 1.8 3.9E-05 49.0 47.4 52 406-457 409-460 (1265)
48 PHA02562 46 endonuclease subun 96.4 2 4.3E-05 47.2 29.4 19 329-347 305-323 (562)
49 COG1579 Zn-ribbon protein, pos 96.4 0.77 1.7E-05 45.3 20.7 67 394-460 90-156 (239)
50 PF10473 CENP-F_leu_zip: Leuci 96.3 0.78 1.7E-05 41.7 18.9 62 307-368 50-111 (140)
51 KOG0980 Actin-binding protein 96.3 3.1 6.7E-05 47.6 33.4 81 147-227 401-481 (980)
52 KOG0994 Extracellular matrix g 96.2 3.9 8.5E-05 48.1 38.6 50 159-208 1418-1467(1758)
53 COG1579 Zn-ribbon protein, pos 95.9 2.1 4.5E-05 42.3 22.9 95 252-353 46-140 (239)
54 PF12128 DUF3584: Protein of u 95.7 7.1 0.00015 47.4 55.7 100 305-404 603-703 (1201)
55 PF05483 SCP-1: Synaptonemal c 95.6 5 0.00011 44.9 56.0 28 147-174 336-363 (786)
56 PF12718 Tropomyosin_1: Tropom 95.5 1.9 4.1E-05 39.3 19.5 41 313-353 25-65 (143)
57 KOG4673 Transcription factor T 95.5 5.7 0.00012 44.4 47.3 37 147-183 407-443 (961)
58 PRK01156 chromosome segregatio 95.3 7.8 0.00017 45.3 56.5 18 67-84 308-325 (895)
59 PF06160 EzrA: Septation ring 95.3 6 0.00013 43.9 45.6 77 58-136 76-152 (560)
60 KOG0994 Extracellular matrix g 95.3 8.5 0.00018 45.5 39.3 55 164-222 1505-1559(1758)
61 PF09726 Macoilin: Transmembra 95.1 7.8 0.00017 44.2 28.2 28 403-430 625-652 (697)
62 KOG1003 Actin filament-coating 95.0 3.5 7.5E-05 39.3 22.4 138 303-447 61-198 (205)
63 COG4942 Membrane-bound metallo 94.9 6.3 0.00014 42.0 29.2 42 413-454 223-264 (420)
64 COG4372 Uncharacterized protei 94.9 6 0.00013 41.5 30.9 73 149-221 123-195 (499)
65 PF05557 MAD: Mitotic checkpoi 94.7 0.0088 1.9E-07 68.0 0.0 34 200-233 180-213 (722)
66 PF12718 Tropomyosin_1: Tropom 94.5 3.6 7.8E-05 37.5 19.2 107 329-439 20-126 (143)
67 KOG0979 Structural maintenance 94.5 8.2 0.00018 45.0 22.5 144 248-392 192-338 (1072)
68 PF10498 IFT57: Intra-flagella 94.3 4.3 9.3E-05 42.6 18.8 75 315-389 251-325 (359)
69 KOG0963 Transcription factor/C 94.3 11 0.00023 41.9 36.7 34 190-223 241-274 (629)
70 PRK09039 hypothetical protein; 94.2 5.3 0.00012 41.6 19.3 16 305-320 49-64 (343)
71 PF06160 EzrA: Septation ring 94.0 12 0.00027 41.5 48.4 48 328-375 384-431 (560)
72 PRK04863 mukB cell division pr 93.9 22 0.00048 44.1 51.1 55 65-119 280-334 (1486)
73 KOG4673 Transcription factor T 93.9 14 0.00029 41.6 39.1 21 89-109 343-363 (961)
74 KOG0018 Structural maintenance 93.8 17 0.00038 42.7 38.8 54 302-355 849-902 (1141)
75 PRK04863 mukB cell division pr 93.8 23 0.00049 44.0 48.3 58 57-115 280-337 (1486)
76 KOG1003 Actin filament-coating 93.6 6.9 0.00015 37.4 26.4 169 248-430 22-202 (205)
77 KOG0612 Rho-associated, coiled 93.4 22 0.00048 42.4 41.3 49 64-112 487-535 (1317)
78 PF10473 CENP-F_leu_zip: Leuci 93.2 6.4 0.00014 35.8 19.7 95 272-377 5-99 (140)
79 PF05483 SCP-1: Synaptonemal c 92.9 20 0.00042 40.4 52.0 102 279-380 445-556 (786)
80 PF08317 Spc7: Spc7 kinetochor 92.8 13 0.00029 38.3 20.8 21 92-112 68-88 (325)
81 PF05622 HOOK: HOOK protein; 92.7 0.032 7E-07 63.4 0.0 67 164-230 240-309 (713)
82 COG1340 Uncharacterized archae 92.6 13 0.00028 37.8 35.7 50 329-378 157-206 (294)
83 KOG4643 Uncharacterized coiled 92.3 28 0.00061 40.8 48.8 113 56-187 169-281 (1195)
84 PRK09039 hypothetical protein; 91.8 18 0.00039 37.7 22.2 61 309-369 123-183 (343)
85 TIGR03185 DNA_S_dndD DNA sulfu 91.6 28 0.00061 39.3 36.3 23 331-353 392-414 (650)
86 PF05622 HOOK: HOOK protein; 91.1 0.065 1.4E-06 61.0 0.0 30 419-448 620-649 (713)
87 KOG0946 ER-Golgi vesicle-tethe 90.8 36 0.00078 39.1 26.3 52 320-371 831-882 (970)
88 PF06818 Fez1: Fez1; InterPro 90.8 15 0.00032 35.5 15.6 98 280-377 6-106 (202)
89 PF07926 TPR_MLP1_2: TPR/MLP1/ 90.7 12 0.00025 33.4 16.5 28 317-344 11-38 (132)
90 KOG1029 Endocytic adaptor prot 90.6 36 0.00079 38.9 38.0 141 307-461 470-611 (1118)
91 KOG1029 Endocytic adaptor prot 90.5 37 0.00081 38.8 38.1 123 303-443 452-578 (1118)
92 TIGR03185 DNA_S_dndD DNA sulfu 89.6 41 0.00089 38.0 38.9 103 66-173 184-286 (650)
93 KOG0976 Rho/Rac1-interacting s 89.3 47 0.001 38.2 48.7 159 305-466 262-434 (1265)
94 KOG0612 Rho-associated, coiled 89.0 60 0.0013 39.1 45.3 23 327-349 671-693 (1317)
95 KOG4809 Rab6 GTPase-interactin 88.6 43 0.00092 36.9 27.7 110 203-328 329-447 (654)
96 PF10498 IFT57: Intra-flagella 88.4 30 0.00066 36.3 17.2 94 345-438 253-352 (359)
97 PF05557 MAD: Mitotic checkpoi 88.2 0.45 9.8E-06 54.3 4.0 29 411-439 507-535 (722)
98 PF10481 CENP-F_N: Cenp-F N-te 87.4 26 0.00056 35.3 14.9 74 307-380 58-131 (307)
99 PF15070 GOLGA2L5: Putative go 87.2 57 0.0012 36.8 39.6 18 413-430 292-309 (617)
100 KOG0999 Microtubule-associated 86.7 55 0.0012 36.1 33.1 73 161-233 6-78 (772)
101 PF04156 IncA: IncA protein; 86.0 30 0.00066 32.4 15.8 9 257-265 87-95 (191)
102 PF13851 GAS: Growth-arrest sp 86.0 34 0.00073 32.9 21.6 26 407-432 143-168 (201)
103 COG4942 Membrane-bound metallo 85.8 54 0.0012 35.1 31.6 32 151-182 40-71 (420)
104 PF05010 TACC: Transforming ac 85.3 38 0.00082 32.9 27.7 70 310-379 70-139 (207)
105 PF09726 Macoilin: Transmembra 85.2 77 0.0017 36.3 31.5 24 328-351 543-566 (697)
106 smart00787 Spc7 Spc7 kinetocho 84.9 50 0.0011 34.0 18.0 37 314-350 156-192 (312)
107 PF07926 TPR_MLP1_2: TPR/MLP1/ 84.9 28 0.00061 31.0 19.7 43 157-199 53-95 (132)
108 PF04156 IncA: IncA protein; 84.8 35 0.00075 32.0 15.8 11 335-345 135-145 (191)
109 PF08614 ATG16: Autophagy prot 84.5 11 0.00024 35.8 10.7 74 274-351 106-179 (194)
110 PF10168 Nup88: Nuclear pore c 84.3 85 0.0018 36.1 22.9 102 78-179 565-669 (717)
111 TIGR02680 conserved hypothetic 84.1 1.2E+02 0.0026 37.6 34.5 24 159-182 796-819 (1353)
112 COG1340 Uncharacterized archae 83.1 58 0.0013 33.3 35.2 49 175-223 32-80 (294)
113 PF04111 APG6: Autophagy prote 82.8 27 0.00059 35.9 13.5 51 366-416 79-129 (314)
114 PF04849 HAP1_N: HAP1 N-termin 82.7 61 0.0013 33.3 28.5 134 310-443 161-298 (306)
115 PF15070 GOLGA2L5: Putative go 82.6 92 0.002 35.2 41.4 43 345-387 266-308 (617)
116 smart00787 Spc7 Spc7 kinetocho 82.5 63 0.0014 33.3 19.7 21 92-112 63-83 (312)
117 TIGR02680 conserved hypothetic 82.2 1.4E+02 0.003 37.0 32.7 65 157-221 757-823 (1353)
118 PF05911 DUF869: Plant protein 82.0 1.1E+02 0.0023 35.6 26.5 78 278-355 625-705 (769)
119 KOG4360 Uncharacterized coiled 82.0 68 0.0015 35.1 16.1 11 256-266 171-181 (596)
120 KOG0972 Huntingtin interacting 81.6 65 0.0014 32.8 17.2 75 315-389 258-332 (384)
121 PF06818 Fez1: Fez1; InterPro 81.3 54 0.0012 31.7 19.9 47 303-349 60-106 (202)
122 PRK15178 Vi polysaccharide exp 80.4 91 0.002 33.7 19.8 79 302-380 242-336 (434)
123 PF00769 ERM: Ezrin/radixin/mo 80.0 66 0.0014 31.9 17.2 103 356-465 31-133 (246)
124 PF05384 DegS: Sensor protein 79.7 52 0.0011 30.6 19.9 130 316-462 9-139 (159)
125 PF08614 ATG16: Autophagy prot 79.5 43 0.00094 31.8 12.8 38 389-426 140-177 (194)
126 KOG0804 Cytoplasmic Zn-finger 79.5 96 0.0021 33.5 17.3 66 150-217 329-394 (493)
127 PF05335 DUF745: Protein of un 78.7 63 0.0014 30.9 18.0 65 386-450 109-173 (188)
128 TIGR01843 type_I_hlyD type I s 77.6 95 0.0021 32.3 23.1 20 275-294 79-98 (423)
129 COG4372 Uncharacterized protei 77.3 1E+02 0.0022 32.6 24.7 47 305-351 119-165 (499)
130 PF12325 TMF_TATA_bd: TATA ele 76.3 55 0.0012 29.0 14.0 48 323-370 61-108 (120)
131 PF14662 CCDC155: Coiled-coil 76.0 75 0.0016 30.4 25.3 23 328-350 100-122 (193)
132 PF05335 DUF745: Protein of un 75.3 78 0.0017 30.2 16.5 122 271-431 54-175 (188)
133 TIGR03007 pepcterm_ChnLen poly 75.1 1.3E+02 0.0028 32.6 22.4 124 333-458 250-378 (498)
134 PF13851 GAS: Growth-arrest sp 74.7 83 0.0018 30.2 22.5 20 202-221 24-43 (201)
135 TIGR01010 BexC_CtrB_KpsE polys 74.3 1.1E+02 0.0025 31.6 18.0 51 327-377 211-261 (362)
136 PF14662 CCDC155: Coiled-coil 74.3 84 0.0018 30.1 26.6 128 58-211 9-136 (193)
137 PF05010 TACC: Transforming ac 74.2 88 0.0019 30.3 26.4 103 337-442 69-171 (207)
138 PF04012 PspA_IM30: PspA/IM30 73.8 87 0.0019 30.1 22.5 85 201-296 26-110 (221)
139 PF12325 TMF_TATA_bd: TATA ele 73.8 64 0.0014 28.5 15.2 96 333-439 19-114 (120)
140 PF11932 DUF3450: Protein of u 73.7 97 0.0021 30.5 14.1 69 329-397 48-116 (251)
141 KOG0980 Actin-binding protein 73.3 1.9E+02 0.0042 33.8 32.8 29 86-114 345-373 (980)
142 PF05667 DUF812: Protein of un 73.1 1.7E+02 0.0036 33.0 34.4 24 415-438 565-588 (594)
143 PF03962 Mnd1: Mnd1 family; I 72.7 89 0.0019 29.7 13.1 54 277-330 110-163 (188)
144 PF08826 DMPK_coil: DMPK coile 72.7 21 0.00047 27.8 7.0 45 334-378 15-59 (61)
145 PF12329 TMF_DNA_bd: TATA elem 72.1 44 0.00094 26.9 9.0 24 274-297 2-25 (74)
146 PF12777 MT: Microtubule-bindi 72.1 22 0.00047 37.0 9.3 78 147-224 226-303 (344)
147 PRK10884 SH3 domain-containing 72.0 39 0.00084 32.7 10.3 59 53-114 89-147 (206)
148 PF15397 DUF4618: Domain of un 71.9 1.1E+02 0.0025 30.6 28.7 44 304-347 83-137 (258)
149 PRK10884 SH3 domain-containing 71.6 83 0.0018 30.5 12.4 29 412-440 137-165 (206)
150 KOG0995 Centromere-associated 71.5 1.7E+02 0.0037 32.5 41.2 44 248-296 429-472 (581)
151 KOG0933 Structural maintenance 71.3 2.3E+02 0.0049 33.8 51.5 70 145-214 395-464 (1174)
152 PRK15422 septal ring assembly 70.9 57 0.0012 26.7 9.3 51 303-353 19-69 (79)
153 TIGR00634 recN DNA repair prot 70.9 1.8E+02 0.0038 32.4 29.9 49 89-137 158-206 (563)
154 PF09789 DUF2353: Uncharacteri 69.6 1.4E+02 0.0031 30.8 22.7 19 248-266 27-45 (319)
155 PF12761 End3: Actin cytoskele 69.6 53 0.0012 31.5 10.4 35 316-350 160-194 (195)
156 PF14915 CCDC144C: CCDC144C pr 69.5 1.4E+02 0.003 30.6 31.2 222 210-443 4-229 (305)
157 PF04111 APG6: Autophagy prote 69.4 96 0.0021 31.9 13.1 56 407-462 78-133 (314)
158 PF11172 DUF2959: Protein of u 68.1 1.2E+02 0.0026 29.3 21.0 28 161-188 26-53 (201)
159 PF15619 Lebercilin: Ciliary p 68.0 1.2E+02 0.0025 29.2 25.4 46 279-328 63-108 (194)
160 KOG0979 Structural maintenance 66.9 2.8E+02 0.006 33.1 28.9 54 243-296 247-302 (1072)
161 PF05384 DegS: Sensor protein 66.7 1.1E+02 0.0024 28.4 21.3 75 303-377 78-152 (159)
162 PF06005 DUF904: Protein of un 66.5 67 0.0014 25.8 10.7 27 271-297 5-31 (72)
163 TIGR02977 phageshock_pspA phag 66.4 1.3E+02 0.0028 29.1 24.5 114 190-321 19-132 (219)
164 PF15397 DUF4618: Domain of un 66.2 1.5E+02 0.0033 29.8 27.2 51 247-298 84-134 (258)
165 PF07798 DUF1640: Protein of u 65.9 1.2E+02 0.0025 28.4 17.0 10 367-376 140-149 (177)
166 COG3524 KpsE Capsule polysacch 64.3 1.8E+02 0.0039 30.0 14.7 96 329-424 222-319 (372)
167 COG2433 Uncharacterized conser 63.1 1.6E+02 0.0034 33.2 13.6 46 306-351 419-464 (652)
168 KOG0946 ER-Golgi vesicle-tethe 62.3 3.1E+02 0.0067 32.0 29.6 62 69-130 655-716 (970)
169 PF10186 Atg14: UV radiation r 62.0 1.7E+02 0.0037 28.9 20.9 29 422-450 120-148 (302)
170 PF11570 E2R135: Coiled-coil r 61.9 1.2E+02 0.0026 27.2 13.8 41 63-103 14-54 (136)
171 PRK11281 hypothetical protein; 61.8 3.7E+02 0.008 32.8 33.2 29 83-111 54-82 (1113)
172 PF14197 Cep57_CLD_2: Centroso 61.1 83 0.0018 25.1 9.7 37 305-341 29-65 (69)
173 PF15290 Syntaphilin: Golgi-lo 60.5 2E+02 0.0043 29.2 15.0 82 358-448 89-172 (305)
174 COG4477 EzrA Negative regulato 60.0 2.8E+02 0.006 30.8 40.5 373 59-464 166-563 (570)
175 COG3883 Uncharacterized protei 59.6 2E+02 0.0043 29.0 25.5 11 339-349 150-160 (265)
176 PF04582 Reo_sigmaC: Reovirus 59.6 21 0.00046 36.9 6.0 123 318-440 30-152 (326)
177 PF08317 Spc7: Spc7 kinetochor 59.2 2.2E+02 0.0047 29.3 27.8 29 412-440 235-263 (325)
178 TIGR00634 recN DNA repair prot 59.1 2.9E+02 0.0063 30.7 25.0 28 155-182 160-187 (563)
179 PF10146 zf-C4H2: Zinc finger- 57.8 2E+02 0.0043 28.4 15.1 38 392-429 66-103 (230)
180 PRK10869 recombination and rep 57.4 3.1E+02 0.0067 30.5 30.5 49 89-137 154-202 (553)
181 KOG1962 B-cell receptor-associ 57.0 80 0.0017 30.8 9.2 47 307-353 163-209 (216)
182 PF08826 DMPK_coil: DMPK coile 56.8 93 0.002 24.3 9.3 45 288-336 15-59 (61)
183 KOG2991 Splicing regulator [RN 56.6 2.2E+02 0.0048 28.6 27.5 221 158-431 68-302 (330)
184 PF09789 DUF2353: Uncharacteri 56.6 2.5E+02 0.0054 29.1 23.9 41 253-298 74-114 (319)
185 PF09304 Cortex-I_coil: Cortex 56.2 1.4E+02 0.003 26.0 14.8 49 329-377 15-63 (107)
186 PF09738 DUF2051: Double stran 56.2 2.2E+02 0.0047 29.3 12.7 65 271-339 99-163 (302)
187 PF07106 TBPIP: Tat binding pr 55.8 57 0.0012 30.1 7.9 64 310-378 73-136 (169)
188 PRK10929 putative mechanosensi 55.5 4.6E+02 0.01 31.9 32.7 262 173-464 26-315 (1109)
189 COG2433 Uncharacterized conser 55.3 3.5E+02 0.0076 30.5 18.0 32 410-441 477-508 (652)
190 TIGR01005 eps_transp_fam exopo 54.7 3.8E+02 0.0083 30.7 24.3 115 330-461 288-402 (754)
191 PF14197 Cep57_CLD_2: Centroso 54.6 1.1E+02 0.0023 24.4 10.3 60 157-216 6-65 (69)
192 PF05911 DUF869: Plant protein 52.9 4.3E+02 0.0093 30.8 34.3 246 161-452 15-301 (769)
193 PF15619 Lebercilin: Ciliary p 52.9 2.2E+02 0.0047 27.3 25.4 99 274-375 86-188 (194)
194 KOG0018 Structural maintenance 52.5 4.9E+02 0.011 31.3 37.2 22 422-443 452-473 (1141)
195 PF13514 AAA_27: AAA domain 52.5 5E+02 0.011 31.4 42.6 25 196-220 741-765 (1111)
196 PF15290 Syntaphilin: Golgi-lo 52.0 1.7E+02 0.0037 29.7 10.7 55 390-444 93-147 (305)
197 COG0419 SbcC ATPase involved i 51.8 4.7E+02 0.01 30.9 53.6 373 62-464 230-641 (908)
198 PF10146 zf-C4H2: Zinc finger- 51.0 2.6E+02 0.0055 27.6 15.0 22 321-342 58-79 (230)
199 COG3074 Uncharacterized protei 50.9 1.3E+02 0.0028 24.2 10.0 51 303-353 19-69 (79)
200 PF09787 Golgin_A5: Golgin sub 50.6 3.8E+02 0.0082 29.5 29.4 39 309-347 274-312 (511)
201 PF04012 PspA_IM30: PspA/IM30 49.6 2.4E+02 0.0053 26.9 19.2 47 305-351 26-72 (221)
202 COG4477 EzrA Negative regulato 48.9 4.2E+02 0.009 29.5 45.6 90 284-373 323-432 (570)
203 PF10212 TTKRSYEDQ: Predicted 48.1 4E+02 0.0086 29.5 13.6 28 351-378 487-514 (518)
204 PF09755 DUF2046: Uncharacteri 47.9 3.3E+02 0.0072 28.1 33.7 265 165-476 29-306 (310)
205 KOG4360 Uncharacterized coiled 47.5 4.3E+02 0.0093 29.2 20.0 92 167-269 216-307 (596)
206 PF11559 ADIP: Afadin- and alp 47.3 2.1E+02 0.0047 25.7 15.3 91 274-378 56-146 (151)
207 PF09728 Taxilin: Myosin-like 46.4 3.5E+02 0.0075 27.8 38.5 279 157-440 2-298 (309)
208 PF05266 DUF724: Protein of un 45.4 2.8E+02 0.0061 26.5 14.5 55 386-440 131-185 (190)
209 PF09727 CortBP2: Cortactin-bi 45.1 2.9E+02 0.0063 26.5 14.6 108 18-135 51-163 (192)
210 COG3883 Uncharacterized protei 45.1 3.4E+02 0.0074 27.4 26.2 63 248-319 35-97 (265)
211 PF06008 Laminin_I: Laminin Do 44.6 3.3E+02 0.0071 27.0 28.1 229 15-291 11-262 (264)
212 PF07106 TBPIP: Tat binding pr 44.2 1.2E+02 0.0026 28.0 8.1 7 285-291 80-86 (169)
213 TIGR03007 pepcterm_ChnLen poly 44.0 4.5E+02 0.0096 28.4 23.2 23 415-437 356-378 (498)
214 PF10234 Cluap1: Clusterin-ass 44.0 1.1E+02 0.0025 30.8 8.3 68 304-378 171-238 (267)
215 cd07672 F-BAR_PSTPIP2 The F-BA 43.9 3.3E+02 0.0072 26.9 17.5 123 323-448 54-188 (240)
216 COG5420 Uncharacterized conser 43.6 1.5E+02 0.0033 23.3 7.0 30 146-176 39-68 (71)
217 KOG2077 JNK/SAPK-associated pr 43.0 4.3E+02 0.0094 29.6 12.8 51 330-380 329-379 (832)
218 PF03962 Mnd1: Mnd1 family; I 42.5 3.1E+02 0.0066 26.1 12.8 25 392-416 134-158 (188)
219 TIGR03752 conj_TIGR03752 integ 42.4 2.7E+02 0.0059 30.4 11.3 53 326-378 69-122 (472)
220 PF10234 Cluap1: Clusterin-ass 41.7 2.7E+02 0.0058 28.2 10.5 52 327-378 166-217 (267)
221 PF05377 FlaC_arch: Flagella a 41.0 96 0.0021 23.7 5.5 30 323-352 7-36 (55)
222 PRK10698 phage shock protein P 40.5 3.6E+02 0.0077 26.3 18.6 63 385-447 112-185 (222)
223 COG1842 PspA Phage shock prote 40.1 3.7E+02 0.008 26.4 19.4 47 305-351 27-73 (225)
224 PF04880 NUDE_C: NUDE protein, 38.9 45 0.00098 31.2 4.3 21 273-293 3-23 (166)
225 PF05103 DivIVA: DivIVA protei 38.8 21 0.00045 31.2 2.0 39 314-352 23-61 (131)
226 PF13166 AAA_13: AAA domain 38.8 6.2E+02 0.014 28.6 26.2 47 324-370 425-471 (712)
227 PF04582 Reo_sigmaC: Reovirus 38.7 54 0.0012 33.9 5.2 68 310-377 64-131 (326)
228 TIGR01005 eps_transp_fam exopo 38.2 6.7E+02 0.014 28.8 24.6 43 272-318 290-332 (754)
229 PF08606 Prp19: Prp19/Pso4-lik 38.2 2.1E+02 0.0046 23.0 8.3 60 318-377 10-69 (70)
230 PF09787 Golgin_A5: Golgin sub 38.0 5.8E+02 0.013 28.0 38.5 49 64-112 116-168 (511)
231 COG1730 GIM5 Predicted prefold 36.7 3.4E+02 0.0073 24.9 13.5 46 328-373 92-137 (145)
232 TIGR02977 phageshock_pspA phag 35.7 4.1E+02 0.0089 25.6 18.4 39 311-349 33-71 (219)
233 COG4026 Uncharacterized protei 35.5 4E+02 0.0087 26.3 10.1 18 308-325 134-151 (290)
234 PF03915 AIP3: Actin interacti 34.6 6.2E+02 0.013 27.3 17.5 21 162-182 150-170 (424)
235 PF06810 Phage_GP20: Phage min 34.3 2.4E+02 0.0052 26.0 8.3 18 248-265 31-48 (155)
236 cd07673 F-BAR_FCHO2 The F-BAR 34.1 4.9E+02 0.011 26.0 16.0 44 324-367 61-104 (269)
237 PF09738 DUF2051: Double stran 34.1 5.4E+02 0.012 26.5 13.7 81 343-423 83-163 (302)
238 COG3352 FlaC Putative archaeal 33.9 3.9E+02 0.0084 24.8 9.5 61 312-378 75-135 (157)
239 PF05278 PEARLI-4: Arabidopsis 33.6 5.2E+02 0.011 26.2 15.9 29 86-114 153-181 (269)
240 PF06005 DUF904: Protein of un 33.6 2.5E+02 0.0055 22.5 10.4 18 302-319 18-35 (72)
241 PF04849 HAP1_N: HAP1 N-termin 33.0 5.7E+02 0.012 26.4 27.4 49 329-377 212-260 (306)
242 KOG2264 Exostosin EXT1L [Signa 32.0 2.2E+02 0.0049 31.7 8.6 52 305-356 89-140 (907)
243 PF13870 DUF4201: Domain of un 31.9 4.2E+02 0.009 24.5 22.1 165 207-397 8-177 (177)
244 KOG4807 F-actin binding protei 31.8 6.7E+02 0.014 26.9 24.6 198 151-374 343-581 (593)
245 cd07647 F-BAR_PSTPIP The F-BAR 31.7 4.9E+02 0.011 25.3 17.2 32 324-355 54-85 (239)
246 KOG3156 Uncharacterized membra 31.6 5E+02 0.011 25.4 12.7 25 323-347 116-140 (220)
247 PHA03011 hypothetical protein; 31.5 3.4E+02 0.0073 23.4 8.4 57 166-222 60-116 (120)
248 PF15294 Leu_zip: Leucine zipp 31.1 5.8E+02 0.013 26.0 15.4 49 415-464 216-264 (278)
249 TIGR00998 8a0101 efflux pump m 31.0 5.6E+02 0.012 25.7 18.7 94 61-173 77-170 (334)
250 PF12001 DUF3496: Domain of un 30.8 3.1E+02 0.0066 24.0 7.8 52 58-109 8-67 (111)
251 PF10481 CENP-F_N: Cenp-F N-te 30.1 6.1E+02 0.013 25.8 17.5 79 311-389 48-126 (307)
252 PF08647 BRE1: BRE1 E3 ubiquit 29.8 3.4E+02 0.0073 22.8 11.2 31 317-347 39-69 (96)
253 PF07889 DUF1664: Protein of u 29.7 4.1E+02 0.0089 23.8 11.7 37 306-342 86-122 (126)
254 PF05667 DUF812: Protein of un 29.6 8.6E+02 0.019 27.5 36.6 73 272-346 456-528 (594)
255 PRK09973 putative outer membra 28.5 3E+02 0.0065 23.0 7.0 41 397-437 28-68 (85)
256 PF08581 Tup_N: Tup N-terminal 28.5 3.3E+02 0.0072 22.3 9.9 16 361-376 60-75 (79)
257 PRK11281 hypothetical protein; 28.5 1.2E+03 0.025 28.6 29.2 8 147-154 41-48 (1113)
258 PF06120 Phage_HK97_TLTM: Tail 28.3 6.7E+02 0.015 25.8 14.3 17 248-264 52-68 (301)
259 PRK10476 multidrug resistance 28.0 6.6E+02 0.014 25.6 18.1 32 147-178 150-181 (346)
260 PF02403 Seryl_tRNA_N: Seryl-t 27.8 3.7E+02 0.008 22.6 9.9 27 325-351 69-95 (108)
261 KOG2391 Vacuolar sorting prote 27.8 2.6E+02 0.0056 29.2 7.9 25 358-382 253-277 (365)
262 PF05276 SH3BP5: SH3 domain-bi 27.0 6.3E+02 0.014 25.1 27.5 30 435-464 191-220 (239)
263 TIGR01000 bacteriocin_acc bact 26.6 8.2E+02 0.018 26.2 22.0 170 215-389 93-315 (457)
264 PRK11519 tyrosine kinase; Prov 26.5 1E+03 0.022 27.3 20.1 15 334-348 315-329 (719)
265 PRK15136 multidrug efflux syst 26.5 7.7E+02 0.017 25.9 15.7 33 147-179 156-188 (390)
266 PF11365 DUF3166: Protein of u 26.5 2.4E+02 0.0052 24.1 6.2 42 58-99 2-43 (96)
267 PF06476 DUF1090: Protein of u 26.4 4.4E+02 0.0096 23.1 9.0 69 252-320 44-114 (115)
268 KOG4643 Uncharacterized coiled 26.4 1.2E+03 0.026 28.1 41.4 123 67-195 201-326 (1195)
269 cd07648 F-BAR_FCHO The F-BAR ( 26.3 6.3E+02 0.014 24.8 16.4 45 325-369 55-99 (261)
270 PF11172 DUF2959: Protein of u 26.1 6.1E+02 0.013 24.5 16.4 13 255-267 116-128 (201)
271 PRK09841 cryptic autophosphory 25.2 1.1E+03 0.023 27.1 19.5 6 1-6 1-6 (726)
272 KOG2077 JNK/SAPK-associated pr 24.5 1.1E+03 0.023 26.8 14.2 59 353-411 324-382 (832)
273 PF15249 GLTSCR1: Glioma tumor 24.2 44 0.00095 28.8 1.5 17 20-36 15-31 (109)
274 COG5185 HEC1 Protein involved 24.1 9.9E+02 0.021 26.3 33.5 47 64-111 271-317 (622)
275 PRK00409 recombination and DNA 23.6 1.2E+03 0.026 27.2 16.8 12 403-414 580-591 (782)
276 KOG2264 Exostosin EXT1L [Signa 23.0 7.8E+02 0.017 27.7 10.7 65 390-454 83-147 (907)
277 PF05615 THOC7: Tho complex su 22.8 5.4E+02 0.012 22.8 11.3 56 77-140 73-128 (139)
278 PF15254 CCDC14: Coiled-coil d 22.7 1.3E+03 0.028 27.1 19.3 159 272-443 339-523 (861)
279 PTZ00464 SNF-7-like protein; P 22.4 7.2E+02 0.016 24.1 18.3 23 58-80 26-48 (211)
280 PF05529 Bap31: B-cell recepto 22.1 6.5E+02 0.014 23.5 9.8 72 359-443 119-190 (192)
281 PF08606 Prp19: Prp19/Pso4-lik 21.6 4.3E+02 0.0094 21.2 8.6 38 152-189 11-48 (70)
282 PRK10869 recombination and rep 21.6 1.1E+03 0.025 26.1 26.3 34 154-187 155-188 (553)
283 PRK15422 septal ring assembly 21.5 4.6E+02 0.01 21.5 9.9 50 329-378 17-66 (79)
284 COG3074 Uncharacterized protei 21.4 4.4E+02 0.0095 21.2 9.7 51 329-379 17-67 (79)
285 PF15294 Leu_zip: Leucine zipp 21.4 8.7E+02 0.019 24.7 14.0 107 162-283 138-253 (278)
286 KOG0995 Centromere-associated 21.2 1.2E+03 0.026 26.2 47.4 41 247-288 349-389 (581)
287 PRK10698 phage shock protein P 20.9 7.8E+02 0.017 23.9 23.8 16 208-223 34-49 (222)
288 PRK00409 recombination and DNA 20.6 1.4E+03 0.03 26.7 16.1 6 420-425 583-588 (782)
289 TIGR02231 conserved hypothetic 20.6 1.1E+03 0.024 25.7 12.1 91 357-447 70-171 (525)
290 PF13514 AAA_27: AAA domain 20.5 1.6E+03 0.034 27.3 53.2 144 89-233 547-701 (1111)
291 PRK09578 periplasmic multidrug 20.5 7.5E+02 0.016 25.7 10.2 33 147-179 137-169 (385)
292 KOG3809 Microtubule-binding pr 20.4 1.1E+03 0.024 25.7 10.9 42 356-397 537-578 (583)
No 1
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=100.00 E-value=1.6e-70 Score=590.64 Aligned_cols=434 Identities=43% Similarity=0.549 Sum_probs=417.0
Q ss_pred CCCchhhHHHHhhhcCCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 23 SAPFQSVKDAVTLFGEGAFSGEKPSIRKPKPHSAERVLAKETQLHLAQRELNKLKDQLKNAEDTKAQAFVELEKAKRTVE 102 (478)
Q Consensus 23 ~~p~~SVk~Avs~Fg~~~~~~~~~~~~r~~~~~~e~~~~~e~ql~~~qeel~k~k~ql~~aE~~k~~a~~EL~~ak~~~e 102 (478)
+|||+|||+|||+|||+++ |+|. ++++++..++.+|+++|+++++|++++..+|.+|.+|++||+.||++|+
T Consensus 1 ~apf~SVk~Avs~FG~~~~--~k~~------~~~e~~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~ve 72 (522)
T PF05701_consen 1 SAPFESVKEAVSLFGGSID--WKKH------QSLERVKEKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVE 72 (522)
T ss_pred CCCChHHHHHHHHcCCccc--cccC------CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999998865 3443 2338999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011758 103 DLSHKLKVVIESKESAIKVTEAAKIQAKQIEESNCSNPSGSDGARNQDLETEREKYTSVFSELAAAKQELRKIHQDCNST 182 (478)
Q Consensus 103 eL~~kLe~a~~e~~~a~e~~e~~k~r~~Ele~~~~~~~~~~~~a~k~eLe~~~~q~~~~~~eL~s~k~EL~kl~~el~~~ 182 (478)
+|+++|+.++.++.+|+++++++++|+++|++|+++.+ ++.|+.+|++++.||+.++++|+++++||.+++++|+++
T Consensus 73 el~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~---~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~ 149 (522)
T PF05701_consen 73 ELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEA---SVAWKAELESAREQYASAVAELDSVKQELEKLRQELASA 149 (522)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988854 456999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 183 LEAKVTAFNLAAAAENSAKANMERVSELSKEISTVQESIGQVKLATMQAQQEQAKVFAEKDLQRQSYKATLEESAKKLLA 262 (478)
Q Consensus 183 ~e~k~~A~~~aeea~~~~~~~~~~ve~L~~El~~~Ke~l~~~~~a~~~Aee~~~~~~~~~~~~~~~~~~~lee~~~~l~~ 262 (478)
+++|+.|+++|++|.++++.+.++|++|+.||.++|+++++++++|++|++++.++..+++.++..|+..|++++.++..
T Consensus 150 ~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~ 229 (522)
T PF05701_consen 150 LDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEE 229 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHH--------------HHHHHHHHHHHHHhHHHHHHHHHHH
Q 011758 263 LRNQFDPQLTQNLETQLTETMSEIAALQKQLENAKASDLDS--------------VRIVTSELDDAKGSLQKVAEEESSL 328 (478)
Q Consensus 263 L~~e~~~el~k~LE~kL~~~~~ei~~Lq~el~~~~~~~~~~--------------v~~~~~ELee~k~~L~~a~~E~~~l 328 (478)
|+.++. ..++|+++|..++.+|..|+.+|..++.+.+.. +.+++.||++++.+|+++++|+++|
T Consensus 230 L~~e~~--~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L 307 (522)
T PF05701_consen 230 LKEELE--AAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSL 307 (522)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999995 999999999999999999999999988765544 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHH
Q 011758 329 RNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEAKIRGASEEMISSLHQLSLETENARQE 408 (478)
Q Consensus 329 ~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eeka~~~~~~L~~~Lqq~s~Eae~Ak~~ 408 (478)
+..+++|+++|+++|.++..++++++.+++.|++|+.+|++++++|+.++..+.+++..+.+|+..|+++++|++.|+..
T Consensus 308 ~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~e 387 (522)
T PF05701_consen 308 RASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKE 387 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011758 409 AEEMKNKAMELKEEAGATKIALEEAEKKLRAALEEAEEAKGAETRALDRLRRCLRELVLHV 469 (478)
Q Consensus 409 a~~~~~el~~~keE~E~akaei~~~E~rL~a~~kE~eaakasE~~Al~~l~~l~e~~~~~~ 469 (478)
+..++.++.+++.+++++++.+.+++.||+++++|+++||++|++|++.|++|+++.++..
T Consensus 388 a~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~~~~~ 448 (522)
T PF05701_consen 388 AEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKALSESESSSR 448 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 9999999999999999999999999999999999999999999999999999999886654
No 2
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=99.41 E-value=7.1e-08 Score=105.03 Aligned_cols=356 Identities=24% Similarity=0.284 Sum_probs=213.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC------CCCCchhhhhhhHHH---------
Q 011758 90 AFVELEKAKRTVEDLSHKLKVVIESKESAIKVTEAAKIQAKQIEESNCSN------PSGSDGARNQDLETE--------- 154 (478)
Q Consensus 90 a~~EL~~ak~~~eeL~~kLe~a~~e~~~a~e~~e~~k~r~~Ele~~~~~~------~~~~~~a~k~eLe~~--------- 154 (478)
...+|..++..+..++.+|..+..++.++...++-++--+.+|-..+-.. +.......+..+.-.
T Consensus 32 ~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~ 111 (522)
T PF05701_consen 32 KETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEAS 111 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccch
Confidence 44566666666777777777777777777777777766666654332110 000001111111111
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHH
Q 011758 155 ---REKYTSVFSELAAAKQELRKIHQDCNSTLEAKVTAFNLAAAAENSAKANMERVSELSKEISTVQESIGQVKLATMQA 231 (478)
Q Consensus 155 ---~~q~~~~~~eL~s~k~EL~kl~~el~~~~e~k~~A~~~aeea~~~~~~~~~~ve~L~~El~~~Ke~l~~~~~a~~~A 231 (478)
+.++..+-.....+..+|..++++|..+...-+.++..-..|...+.......+.-...+..|.-.+..++..+..+
T Consensus 112 ~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~ 191 (522)
T PF05701_consen 112 VAWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESA 191 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111222222233334444444444444444444433334444444444444444444444444444444333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------hHHHH
Q 011758 232 QQEQAKVFAEKDLQRQSYKATLEESAKKLLALRNQFDPQLTQNLETQLTETMSEIAALQKQLENAKASD------LDSVR 305 (478)
Q Consensus 232 ee~~~~~~~~~~~~~~~~~~~lee~~~~l~~L~~e~~~el~k~LE~kL~~~~~ei~~Lq~el~~~~~~~------~~~v~ 305 (478)
..-... +..+...+-.+.+ .....++..|.+....+..|..++...+..+ ...+.
T Consensus 192 ~~a~~e------------------Aeee~~~~~~~~~-~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~ 252 (522)
T PF05701_consen 192 KLAHIE------------------AEEERIEIAAERE-QDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELE 252 (522)
T ss_pred HHHHHH------------------HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221111 1111111111111 1122233334444444444444443222110 03455
Q ss_pred HHHHHHHHHHH-hHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHH
Q 011758 306 IVTSELDDAKG-SLQK---VAEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEE 381 (478)
Q Consensus 306 ~~~~ELee~k~-~L~~---a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~E 381 (478)
.+..+|..+.. .+.. .+.....+...+.+++.||+..+..|..+..........+.+|..+|.+.+.+|..++..+
T Consensus 253 ~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e 332 (522)
T PF05701_consen 253 SLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKERE 332 (522)
T ss_pred HHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666665 3333 3345566778899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 382 AKIRGASEEMISSLHQLSLETENARQ-------EAEEMKNKAMELKEEAGATKIALEEAEKKLRAALEEAEEAKGAETRA 454 (478)
Q Consensus 382 eka~~~~~~L~~~Lqq~s~Eae~Ak~-------~a~~~~~el~~~keE~E~akaei~~~E~rL~a~~kE~eaakasE~~A 454 (478)
..+...+.+|...|.++.++++.++. ....+...++.+..|++.++.....+...+.-+..+++.+|++=.-+
T Consensus 333 ~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~ 412 (522)
T PF05701_consen 333 KEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTA 412 (522)
T ss_pred HHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999866433 34456779999999999999999999999999999999999988888
Q ss_pred HHHHHHHHhh
Q 011758 455 LDRLRRCLRE 464 (478)
Q Consensus 455 l~~l~~l~e~ 464 (478)
-.+|.+....
T Consensus 413 E~rL~aa~ke 422 (522)
T PF05701_consen 413 EERLEAALKE 422 (522)
T ss_pred HHHHHHHHHH
Confidence 8777776443
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.14 E-value=8.4e-06 Score=96.15 Aligned_cols=47 Identities=11% Similarity=0.194 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 73 LNKLKDQLKNAEDTKAQAFVELEKAKRTVEDLSHKLKVVIESKESAI 119 (478)
Q Consensus 73 l~k~k~ql~~aE~~k~~a~~EL~~ak~~~eeL~~kLe~a~~e~~~a~ 119 (478)
+..|..++..+...-.++.+.+.+....+.+|..+++.+......+.
T Consensus 165 ~~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~e~~~ 211 (1164)
T TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAE 211 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666655555556666666666666777777766665555444
No 4
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.00 E-value=3.1e-05 Score=91.16 Aligned_cols=34 Identities=15% Similarity=0.235 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 87 KAQAFVELEKAKRTVEDLSHKLKVVIESKESAIK 120 (478)
Q Consensus 87 k~~a~~EL~~ak~~~eeL~~kLe~a~~e~~~a~e 120 (478)
+..+...|.+....+.++..+|.........|..
T Consensus 174 ~~~t~~nL~r~~d~l~el~~ql~~L~~q~~~a~~ 207 (1179)
T TIGR02168 174 RKETERKLERTRENLDRLEDILNELERQLKSLER 207 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666666555555543
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.95 E-value=0.00013 Score=86.21 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 83 AEDTKAQAFVELEKAKRTVEDLSHKLKVVIESKESAIKVTE 123 (478)
Q Consensus 83 aE~~k~~a~~EL~~ak~~~eeL~~kLe~a~~e~~~a~e~~e 123 (478)
.......+...|..+...+.++...+.........+....+
T Consensus 168 ~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~e 208 (1164)
T TIGR02169 168 FDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRERE 208 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677788888888888888888887766666654444
No 6
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.93 E-value=0.00045 Score=83.33 Aligned_cols=129 Identities=10% Similarity=0.083 Sum_probs=75.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHHHHhh
Q 011758 309 SELDDAKGSLQKVAEEESSLRNLVESL--KVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEAKIRG 386 (478)
Q Consensus 309 ~ELee~k~~L~~a~~E~~~l~~~v~sL--r~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eeka~~ 386 (478)
.+++.....+.....+...+...+..+ ..++...+..+..|.... +.....++..+...+..++..+...-....+
T Consensus 998 ~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~--~~~~~~~~~~e~~~l~~~~~~l~~~~a~l~g 1075 (1311)
T TIGR00606 998 EDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEM--GQMQVLQMKQEHQKLEENIDLIKRNHVLALG 1075 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444444444 555555555555554433 2334467777777777777777666666666
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 387 ASEEMISSLHQLSLETENARQEAEEMKNKAMELKEEAGATKIALEEAEKKLRAAL 441 (478)
Q Consensus 387 ~~~~L~~~Lqq~s~Eae~Ak~~a~~~~~el~~~keE~E~akaei~~~E~rL~a~~ 441 (478)
-+..|...+..+..+++. ..+..+....++.--++..++..+..+..=..++-
T Consensus 1076 ~~k~le~qi~~l~~eL~e--~~yk~a~~ryrka~i~~~~~~~~~~d~~~~~~~~~ 1128 (1311)
T TIGR00606 1076 RQKGYEKEIKHFKKELRE--PQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLD 1128 (1311)
T ss_pred HHHHHHHHHHHHHHHHcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777755 45666666777777777777777776665444443
No 7
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.93 E-value=0.00013 Score=86.75 Aligned_cols=57 Identities=19% Similarity=0.273 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011758 72 ELNKLKDQLKNAEDTKAQAFVELEKAKRTVEDLSHKLKVVIESKESAIKVTEAAKIQAKQIEESN 136 (478)
Q Consensus 72 el~k~k~ql~~aE~~k~~a~~EL~~ak~~~eeL~~kLe~a~~e~~~a~e~~e~~k~r~~Ele~~~ 136 (478)
.+.+|+.+...++..=..+..-|.+-..++.++..+|+........|. +|..+....
T Consensus 166 Gv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~--------~y~~l~~e~ 222 (1163)
T COG1196 166 GVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAE--------RYQELKAEL 222 (1163)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH
Confidence 467899999988888888889999999999999999999998888888 777776553
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.86 E-value=0.0002 Score=84.33 Aligned_cols=47 Identities=21% Similarity=0.321 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 73 LNKLKDQLKNAEDTKAQAFVELEKAKRTVEDLSHKLKVVIESKESAI 119 (478)
Q Consensus 73 l~k~k~ql~~aE~~k~~a~~EL~~ak~~~eeL~~kLe~a~~e~~~a~ 119 (478)
+..|+........--.++.+-+.+....+..|..+.+.+..-.....
T Consensus 167 ~~~~~~~~~~t~~nL~r~~d~l~el~~ql~~L~~q~~~a~~~~~~~~ 213 (1179)
T TIGR02168 167 ISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAE 213 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777788888888888999999988888875555443
No 9
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.86 E-value=0.00048 Score=77.94 Aligned_cols=306 Identities=19% Similarity=0.215 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 011758 64 TQLHLAQRELNKLKDQLKNAEDTKAQAFVELEKAKRTVEDLSHKLKVVIESKESAIKVTEAAKIQAKQIEESNCSNPSGS 143 (478)
Q Consensus 64 ~ql~~~qeel~k~k~ql~~aE~~k~~a~~EL~~ak~~~eeL~~kLe~a~~e~~~a~e~~e~~k~r~~Ele~~~~~~~~~~ 143 (478)
+++..++.++...+.....+..+-.....+| ++.+.+.-|...++.++.+...... .+.+.-.+..|.... +..+..
T Consensus 53 a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~-er~~~E 129 (775)
T PF10174_consen 53 AELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAER-ERLQRE 129 (775)
T ss_pred HHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHHH-HHHHHH
Confidence 3555555555555555544444444555555 5555555555555555433332221 222222222221100 000000
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 144 DGARNQDLETEREKYTSVFSELAAAKQELRKIHQDCNS------TLEAKVTAFNLAAAAENSAKANMERVSELSKEISTV 217 (478)
Q Consensus 144 ~~a~k~eLe~~~~q~~~~~~eL~s~k~EL~kl~~el~~------~~e~k~~A~~~aeea~~~~~~~~~~ve~L~~El~~~ 217 (478)
-.-.+..++.++.+....=..|+.+-.+|.+|...+.. +...-+.+..++.++..........++....+...+
T Consensus 130 l~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~ 209 (775)
T PF10174_consen 130 LERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERKEKEHMEA 209 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 01122223333333334444444444444444444321 111122333334444444444444444444444333
Q ss_pred HHhHHhhH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH------HHHHHHHH------------
Q 011758 218 QESIGQVK-LATMQAQQ-EQAKVFAEKDLQRQSYKATLEESAKKLLALRNQFDP------QLTQNLET------------ 277 (478)
Q Consensus 218 Ke~l~~~~-~a~~~Aee-~~~~~~~~~~~~~~~~~~~lee~~~~l~~L~~e~~~------el~k~LE~------------ 277 (478)
++.+..-. ..-..|.. -...++..++....++...++.++.++..|+..++. ...+.|+.
T Consensus 210 r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~ 289 (775)
T PF10174_consen 210 REQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKM 289 (775)
T ss_pred hHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHH
Confidence 33221100 00001111 122356778888888888998899999999887662 33344444
Q ss_pred -----HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 278 -----QLTETMSEIAALQKQLENAKASDLDSVRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEK 352 (478)
Q Consensus 278 -----kL~~~~~ei~~Lq~el~~~~~~~~~~v~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~ 352 (478)
+|....+++..++..+..+.. ...-++.-++-++..|.....+...|...++.|+.+|+.....+......
T Consensus 290 d~~~~eL~rk~~E~~~~qt~l~~~~~----~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~ 365 (775)
T PF10174_consen 290 DRLKLELSRKKSELEALQTRLETLEE----QDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQ 365 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555554431 22222444444444444444555556666666666666555555544333
Q ss_pred HhhhHHHHhhHHHHHHHhHHHHHH
Q 011758 353 EAETESIAGNLHVLLQKTKSELEA 376 (478)
Q Consensus 353 e~~a~~~v~~L~~EL~k~k~ELe~ 376 (478)
...+......+..++..++..++.
T Consensus 366 ~~~~qeE~~~~~~Ei~~l~d~~d~ 389 (775)
T PF10174_consen 366 IEKLQEEKSRLQGEIEDLRDMLDK 389 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 10
>PRK02224 chromosome segregation protein; Provisional
Probab=98.76 E-value=0.0011 Score=76.57 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 60 LAKETQLHLAQRELNKLKDQLKNA 83 (478)
Q Consensus 60 ~~~e~ql~~~qeel~k~k~ql~~a 83 (478)
..++.++..+...+..++.++...
T Consensus 209 ~~~~~~l~el~~~i~~~~~~~~~l 232 (880)
T PRK02224 209 NGLESELAELDEEIERYEEQREQA 232 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555444444443
No 11
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.71 E-value=0.0021 Score=76.75 Aligned_cols=37 Identities=22% Similarity=0.250 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 76 LKDQLKNAEDTKAQAFVELEKAKRTVEDLSHKLKVVI 112 (478)
Q Consensus 76 ~k~ql~~aE~~k~~a~~EL~~ak~~~eeL~~kLe~a~ 112 (478)
+..++...+.....+..++..++..+..+...+....
T Consensus 672 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1163)
T COG1196 672 LEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELR 708 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444444444444443
No 12
>PRK02224 chromosome segregation protein; Provisional
Probab=98.65 E-value=0.0024 Score=73.99 Aligned_cols=43 Identities=14% Similarity=0.360 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 70 QRELNKLKDQLKNAEDTKAQAFVELEKAKRTVEDLSHKLKVVI 112 (478)
Q Consensus 70 qeel~k~k~ql~~aE~~k~~a~~EL~~ak~~~eeL~~kLe~a~ 112 (478)
..++..+..++...+........++...+..+..+...++.+.
T Consensus 257 ~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~ 299 (880)
T PRK02224 257 EAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLL 299 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444433
No 13
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.63 E-value=0.0023 Score=72.51 Aligned_cols=21 Identities=14% Similarity=0.207 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011758 92 VELEKAKRTVEDLSHKLKVVI 112 (478)
Q Consensus 92 ~EL~~ak~~~eeL~~kLe~a~ 112 (478)
.||...+...++-..++...+
T Consensus 39 pElkrer~~rkee~a~l~~~k 59 (775)
T PF10174_consen 39 PELKRERALRKEEAAELSRLK 59 (775)
T ss_pred hhhHHHHHHHHHHHHHHHhHH
Confidence 344445555544444444444
No 14
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.39 E-value=0.01 Score=68.43 Aligned_cols=278 Identities=19% Similarity=0.217 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHH
Q 011758 161 VFSELAAAKQELRKIHQDCNSTLEAKV-TAFNLAAAAENSAKANMERVSELSKEISTVQESIGQVKLATMQAQQEQAKVF 239 (478)
Q Consensus 161 ~~~eL~s~k~EL~kl~~el~~~~e~k~-~A~~~aeea~~~~~~~~~~ve~L~~El~~~Ke~l~~~~~a~~~Aee~~~~~~ 239 (478)
..+.+....+++..++..+....+--+ ..-...+--...-..+.+++..+......++......+..-..-++...
T Consensus 332 ~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK--- 408 (1293)
T KOG0996|consen 332 SRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLK--- 408 (1293)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 344455555555555555543322111 1111122222222345556666666666666666555544443333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHH
Q 011758 240 AEKDLQRQSYKATLEESAKKLLALRNQFDPQLTQNLETQLTETMSEIAALQKQLENAKASDLDSVRIVTSELDDAKGSLQ 319 (478)
Q Consensus 240 ~~~~~~~~~~~~~lee~~~~l~~L~~e~~~el~k~LE~kL~~~~~ei~~Lq~el~~~~~~~~~~v~~~~~ELee~k~~L~ 319 (478)
+....+..+.++++..+...+ +++.-+...+..|..++.++..+. ........+|++....+
T Consensus 409 --------~~~~k~kKleke~ek~~~~~~-----e~e~~pe~~~~~i~~~~~ei~~L~----~~~~~~~~~l~e~~~~l- 470 (1293)
T KOG0996|consen 409 --------RLTSKIKKLEKEIEKARRKKS-----ELEKAPEKARIEIQKCQTEIEQLE----ELLEKEERELDEILDSL- 470 (1293)
T ss_pred --------HHHHHHHHHHHHHHHHHhhHH-----HHHhCchhhHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH-
Confidence 444455555555555555544 455555555566666666666554 12233333443333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHHHHhhhHHHHHHHHHHhH
Q 011758 320 KVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEAKIRGASEEMISSLHQLS 399 (478)
Q Consensus 320 ~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eeka~~~~~~L~~~Lqq~s 399 (478)
.....-++.++.....++.-+..+-+.+.+.+.-...+|.-+.+-.+....+-+..++....+...+.+-.
T Consensus 471 ---------~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~ 541 (1293)
T KOG0996|consen 471 ---------KQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKK 541 (1293)
T ss_pred ---------hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333333333333333333333333333333333333333333333333333344444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhhhhh
Q 011758 400 LETENARQEAEEMKNKAMELKEEAGATKIALEEAEKKLRAALEEAEEAKGA------ETRALDRLRRCLRELVLH 468 (478)
Q Consensus 400 ~Eae~Ak~~a~~~~~el~~~keE~E~akaei~~~E~rL~a~~kE~eaakas------E~~Al~~l~~l~e~~~~~ 468 (478)
.++...+.....++.++..+..+...++.....+...+......++.+|.+ .-.++++|.-+-++...+
T Consensus 542 ~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~kesG~i~ 616 (1293)
T KOG0996|consen 542 TELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLKESGRIP 616 (1293)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCCCC
Confidence 455555666666666777777777777777777777777888888877774 345666666666665554
No 15
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.38 E-value=0.018 Score=70.67 Aligned_cols=53 Identities=26% Similarity=0.397 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHH
Q 011758 328 LRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVE 380 (478)
Q Consensus 328 l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~ 380 (478)
|...++.+..++++.......+..+-......+..+......+-.+++..+..
T Consensus 1412 l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e 1464 (1930)
T KOG0161|consen 1412 LQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRE 1464 (1930)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555666666666666666666666666666665444
No 16
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.34 E-value=0.02 Score=69.41 Aligned_cols=136 Identities=13% Similarity=0.167 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHhhHHHHHHHhHHHHHHhHHHH
Q 011758 304 VRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAET--ESIAGNLHVLLQKTKSELEACVVEE 381 (478)
Q Consensus 304 v~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a--~~~v~~L~~EL~k~k~ELe~~~~~E 381 (478)
+..+..+|..+...++.+..+...+...+..|+.++.........+..+.... ...+..+..++..+..++...
T Consensus 972 L~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~---- 1047 (1311)
T TIGR00606 972 LKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQM---- 1047 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----
Confidence 55555666666555666666666666666666666665555555555544433 233333333443333333322
Q ss_pred HHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q 011758 382 AKIRGASEEMISSLHQLSLETENARQEAEEMKNKAMELKEEAGATKIAL-----EEAEKKLRAALEEAEEAK 448 (478)
Q Consensus 382 eka~~~~~~L~~~Lqq~s~Eae~Ak~~a~~~~~el~~~keE~E~akaei-----~~~E~rL~a~~kE~eaak 448 (478)
....+......+..+..........+.-+.+.+...+..++.++ ..++.++.-+.-++...+
T Consensus 1048 -----~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e~~yk~a~~ryrka~i~~~~~~ 1114 (1311)
T TIGR00606 1048 -----QVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKYREMMIVMRTTE 1114 (1311)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Confidence 11333444444444444433333333333444444444444333 456666666665554443
No 17
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.25 E-value=0.033 Score=68.46 Aligned_cols=75 Identities=19% Similarity=0.218 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhH
Q 011758 304 VRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACV 378 (478)
Q Consensus 304 v~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~ 378 (478)
......++.+....++.....++.+......+.+.|+.++..+..--.........+.++.-+.+.++..++.-.
T Consensus 1268 ~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~ 1342 (1930)
T KOG0161|consen 1268 RSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQ 1342 (1930)
T ss_pred HHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666667777777777777777777777776666666666666777777777666666554
No 18
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.21 E-value=0.0047 Score=60.78 Aligned_cols=85 Identities=13% Similarity=0.198 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHHHHhhhHHHHHHHHHHhHHHH
Q 011758 323 EEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEAKIRGASEEMISSLHQLSLET 402 (478)
Q Consensus 323 ~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eeka~~~~~~L~~~Lqq~s~Ea 402 (478)
.=+..+...+..|..+|..+...+..+...+..++.....+...+..+...|..+...-+.+...+..|...+..+..++
T Consensus 134 eR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL 213 (237)
T PF00261_consen 134 ERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDEL 213 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455566666666666666666666666666666666666666666665554443333344444444444444443
Q ss_pred HHHHH
Q 011758 403 ENARQ 407 (478)
Q Consensus 403 e~Ak~ 407 (478)
...+.
T Consensus 214 ~~~k~ 218 (237)
T PF00261_consen 214 EKEKE 218 (237)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 19
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.16 E-value=0.0096 Score=58.62 Aligned_cols=113 Identities=19% Similarity=0.258 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 011758 334 SLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEAKIRGASEEMISSLHQLSLETENARQEAEEMK 413 (478)
Q Consensus 334 sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eeka~~~~~~L~~~Lqq~s~Eae~Ak~~a~~~~ 413 (478)
-....|..+...|..+..+-..+...|..|..+|..+..-|-.+...+.++-.....+...|..+..-...|...++.+.
T Consensus 117 E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE 196 (237)
T PF00261_consen 117 EVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAE 196 (237)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666666666677777788888888888888777777777777777777777777777777777788777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 414 NKAMELKEEAGATKIALEEAEKKLRAALEEAEE 446 (478)
Q Consensus 414 ~el~~~keE~E~akaei~~~E~rL~a~~kE~ea 446 (478)
..+..+...+..+...+.....++..+..+++.
T Consensus 197 ~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~ 229 (237)
T PF00261_consen 197 RRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQ 229 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777654
No 20
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.10 E-value=0.026 Score=61.39 Aligned_cols=40 Identities=20% Similarity=0.180 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHH
Q 011758 193 AAAAENSAKANMERVSELSKEISTVQESIGQVKLATMQAQ 232 (478)
Q Consensus 193 aeea~~~~~~~~~~ve~L~~El~~~Ke~l~~~~~a~~~Ae 232 (478)
...+...++.....+..|..|+..+...-+...+..+.|.
T Consensus 292 Lr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aR 331 (546)
T PF07888_consen 292 LRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQAR 331 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455555666677777777666655455444444433
No 21
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.09 E-value=0.044 Score=63.51 Aligned_cols=26 Identities=8% Similarity=0.078 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 60 LAKETQLHLAQRELNKLKDQLKNAED 85 (478)
Q Consensus 60 ~~~e~ql~~~qeel~k~k~ql~~aE~ 85 (478)
.....++..+-++...+.-++.-++.
T Consensus 270 ~~~~~rv~~L~e~~sek~~~~k~~e~ 295 (1293)
T KOG0996|consen 270 EELMRRVERLNEDRSEKENRVKLVEK 295 (1293)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 33444444444444444443333333
No 22
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.05 E-value=0.046 Score=62.24 Aligned_cols=78 Identities=19% Similarity=0.264 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Q 011758 157 KYTSVFSELAAAKQELRKIHQDCNSTLEAKVTAFNLAAAAENSAKANMERVSELSKEISTVQESIGQVKLATMQAQQE 234 (478)
Q Consensus 157 q~~~~~~eL~s~k~EL~kl~~el~~~~e~k~~A~~~aeea~~~~~~~~~~ve~L~~El~~~Ke~l~~~~~a~~~Aee~ 234 (478)
+|+.--.||.-+..+|.+|..++..+.+.-..-..+-..+...+......+.+|...+..+++..+.+.+..-.+-++
T Consensus 224 EYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~ 301 (1200)
T KOG0964|consen 224 EYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKK 301 (1200)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999998887777777788888888888888888888888888776655544443333
No 23
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.03 E-value=0.043 Score=63.35 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 150 DLETEREKYTSVFSELAAAKQELRKIHQDC 179 (478)
Q Consensus 150 eLe~~~~q~~~~~~eL~s~k~EL~kl~~el 179 (478)
+|+.+..-|.....-|+.+++.|......+
T Consensus 208 ~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i 237 (1074)
T KOG0250|consen 208 QLEQITESYSEIMESLDHAKELIDLKEEEI 237 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344555555555555555555555433333
No 24
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.89 E-value=0.064 Score=58.45 Aligned_cols=101 Identities=25% Similarity=0.240 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHHHHhhhHHHHHHHHHHhHHHH
Q 011758 323 EEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEAKIRGASEEMISSLHQLSLET 402 (478)
Q Consensus 323 ~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eeka~~~~~~L~~~Lqq~s~Ea 402 (478)
.|...|...++..+.++.+++.++..+.+--+.-...-+.|..+|.+.+.- .+--..+....|+.+.+-+
T Consensus 357 qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~----------n~vqlsE~~rel~Elks~l 426 (546)
T PF07888_consen 357 QEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDC----------NRVQLSENRRELQELKSSL 426 (546)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------hHHHHHHHHHHHHHHHHHH
Confidence 455566677777777788888777776665555444555666666542210 1123334455566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 403 ENARQEAEEMKNKAMELKEEAGATKIALEEA 433 (478)
Q Consensus 403 e~Ak~~a~~~~~el~~~keE~E~akaei~~~ 433 (478)
.-+..+.+.+..+-+.++..++.+...++.+
T Consensus 427 rv~qkEKEql~~EkQeL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 427 RVAQKEKEQLQEEKQELLEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666665666666666655555544433
No 25
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.85 E-value=0.11 Score=60.12 Aligned_cols=146 Identities=16% Similarity=0.193 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 011758 63 ETQLHLAQRELNKLKDQLKNAEDTKAQAFVELEKAKRTVEDLSHKLKVVIESKESAIKVTEAAKIQAKQIEESNCSNPSG 142 (478)
Q Consensus 63 e~ql~~~qeel~k~k~ql~~aE~~k~~a~~EL~~ak~~~eeL~~kLe~a~~e~~~a~e~~e~~k~r~~Ele~~~~~~~~~ 142 (478)
-++|..+.+.+..+..-+..+-.-=.....++...++.+.++..+|... .+.+....+...|...
T Consensus 206 aT~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~--------~~~e~~~~~l~~Lk~k------- 270 (1074)
T KOG0250|consen 206 ATQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNL--------EQLEDLKENLEQLKAK------- 270 (1074)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH-------
Confidence 4688888888877776665554444444445555555555554444433 3455555566655433
Q ss_pred CchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 011758 143 SDGARNQDLETEREKYTSVFSELAAAKQELRKIHQDCNSTLEAKVTAFNLAAAAENSAKANMERVSELSKEISTVQESIG 222 (478)
Q Consensus 143 ~~~a~k~eLe~~~~q~~~~~~eL~s~k~EL~kl~~el~~~~e~k~~A~~~aeea~~~~~~~~~~ve~L~~El~~~Ke~l~ 222 (478)
-+|. .......+|.....++.+.+...+.+-+.-.........+...+...+.++..+..+..+.++.+.
T Consensus 271 --~~W~--------~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~ 340 (1074)
T KOG0250|consen 271 --MAWA--------WVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIE 340 (1074)
T ss_pred --HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHH
Confidence 3463 355666777777788888888887777777777788888888888999999999999999888887
Q ss_pred hhHHHHHHHHH
Q 011758 223 QVKLATMQAQQ 233 (478)
Q Consensus 223 ~~~~a~~~Aee 233 (478)
.++........
T Consensus 341 ~~r~~~~~~~r 351 (1074)
T KOG0250|consen 341 EARKDLDDLRR 351 (1074)
T ss_pred HHHHHHHHHHH
Confidence 77665554433
No 26
>PRK03918 chromosome segregation protein; Provisional
Probab=97.82 E-value=0.12 Score=59.76 Aligned_cols=13 Identities=8% Similarity=0.256 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 011758 71 RELNKLKDQLKNA 83 (478)
Q Consensus 71 eel~k~k~ql~~a 83 (478)
..+..++.++...
T Consensus 193 ~~l~~l~~~~~~l 205 (880)
T PRK03918 193 ELIKEKEKELEEV 205 (880)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 27
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.79 E-value=0.2 Score=61.21 Aligned_cols=169 Identities=11% Similarity=0.150 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 011758 59 VLAKETQLHLAQRELNKLKDQLKNAEDTKAQAFVELEKAKRTVEDLSHKLKVVIESKESAIKVTEAAKIQAKQIEESNCS 138 (478)
Q Consensus 59 ~~~~e~ql~~~qeel~k~k~ql~~aE~~k~~a~~EL~~ak~~~eeL~~kLe~a~~e~~~a~e~~e~~k~r~~Ele~~~~~ 138 (478)
+..+..+|.-....+..|+......+..=-++-..|++++. ++..+++......-+.+...-.-+.+...+.....-
T Consensus 914 ~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~---~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~ 990 (1822)
T KOG4674|consen 914 ITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRL---ELEAKIESLHKKITSLEEELSELEKEIENLREELEL 990 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334456666666667777766666666666666666663 333444444444444443333333333333321110
Q ss_pred CCCCC---chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 139 NPSGS---DGARNQDLETEREKYTSVFSELAAAKQELRKIHQDCNSTLEAKVTAFNLAAAAENSAKANMERVSELSKEIS 215 (478)
Q Consensus 139 ~~~~~---~~a~k~eLe~~~~q~~~~~~eL~s~k~EL~kl~~el~~~~e~k~~A~~~aeea~~~~~~~~~~ve~L~~El~ 215 (478)
..-+. -..+..++.+++..+.....-...+-.-+..++.++.....--..|...=+--...-...-.++-.|..++.
T Consensus 991 ~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~ 1070 (1822)
T KOG4674|consen 991 STKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFA 1070 (1822)
T ss_pred cccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00011 123445555555555555555555555555555555444333333322222222222233444444555555
Q ss_pred HHHHhHHhhHHHHHH
Q 011758 216 TVQESIGQVKLATMQ 230 (478)
Q Consensus 216 ~~Ke~l~~~~~a~~~ 230 (478)
.+++.+..++.....
T Consensus 1071 ~~~~e~~~Lk~~~~~ 1085 (1822)
T KOG4674|consen 1071 KCNDELLKLKKSRES 1085 (1822)
T ss_pred HHHHHHHHHHhhHHH
Confidence 555555444444333
No 28
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.79 E-value=0.09 Score=57.31 Aligned_cols=125 Identities=14% Similarity=0.197 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchhhhhhhH
Q 011758 73 LNKLKDQLKNAEDTKAQAFVELEKAKRTVEDLSHKLKVVIESKESAIKVTEAAKIQAKQIEESNCSNPSGSDGARNQDLE 152 (478)
Q Consensus 73 l~k~k~ql~~aE~~k~~a~~EL~~ak~~~eeL~~kLe~a~~e~~~a~e~~e~~k~r~~Ele~~~~~~~~~~~~a~k~eLe 152 (478)
+..+..-+..+...++++..++...+-.+++|..+++++......+.++......++-. ...++.
T Consensus 94 l~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~---------------leAe~~ 158 (546)
T KOG0977|consen 94 LATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSE---------------LEAEIN 158 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhh---------------hhhHHH
Confidence 33444445555556666666666666666666666666665555555444333333322 223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 153 TEREKYTSVFSELAAAKQELRKIHQDCNSTLEAKVTAFNLAAAAENSAKANMERVSELSKEISTVQE 219 (478)
Q Consensus 153 ~~~~q~~~~~~eL~s~k~EL~kl~~el~~~~e~k~~A~~~aeea~~~~~~~~~~ve~L~~El~~~Ke 219 (478)
.++.++...--++.-++.|..+|..++..+. ++-+....-=..+..++..|..+|.-++.
T Consensus 159 ~~krr~~~le~e~~~Lk~en~rl~~~l~~~r-------~~ld~Etllr~d~~n~~q~Lleel~f~~~ 218 (546)
T KOG0977|consen 159 TLKRRIKALEDELKRLKAENSRLREELARAR-------KQLDDETLLRVDLQNRVQTLLEELAFLKR 218 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4444555555555555555555555554433 33344444444566666777766665553
No 29
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.73 E-value=0.22 Score=60.03 Aligned_cols=101 Identities=23% Similarity=0.285 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 011758 331 LVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEAKIRGASEEMISSLHQLSLETENARQEAE 410 (478)
Q Consensus 331 ~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eeka~~~~~~L~~~Lqq~s~Eae~Ak~~a~ 410 (478)
.-+.|+.+++.+...+..+......+......++..+...+.++..+...-...+.....+......+..+...++....
T Consensus 601 ~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 680 (1201)
T PF12128_consen 601 SEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERK 680 (1201)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466666776776666666666666666666666666666665555555444444444444444444444444333221
Q ss_pred -HHHHHHHHHHHHHHHHHHHHH
Q 011758 411 -EMKNKAMELKEEAGATKIALE 431 (478)
Q Consensus 411 -~~~~el~~~keE~E~akaei~ 431 (478)
.....+..+..+......++.
T Consensus 681 ~~~~~~l~~l~~~l~~~~~e~~ 702 (1201)
T PF12128_consen 681 EQIEEQLNELEEELKQLKQELE 702 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 223333344444444443333
No 30
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.72 E-value=0.26 Score=60.29 Aligned_cols=213 Identities=19% Similarity=0.230 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH--HHHHHHHHHH
Q 011758 202 ANMERVSELSKEISTVQESIGQVKLATMQAQQEQAKVFAEKDLQRQSYKATLEESAKKLLALRNQFDP--QLTQNLETQL 279 (478)
Q Consensus 202 ~~~~~ve~L~~El~~~Ke~l~~~~~a~~~Aee~~~~~~~~~~~~~~~~~~~lee~~~~l~~L~~e~~~--el~k~LE~kL 279 (478)
..+.++.+|..+|..+|..+..-.-.... +....+.+...|.+.++.....+..+..+++. .-+..|+.++
T Consensus 802 ~~e~~i~eL~~el~~lk~klq~~~~~~r~-------l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~ 874 (1822)
T KOG4674|consen 802 KCESRIKELERELQKLKKKLQEKSSDLRE-------LTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKL 874 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777777777765443222222 22223333344444445555544444444431 1233445566
Q ss_pred HHHHHHHHHHHHHHHHhccc----ch-HHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 280 TETMSEIAALQKQLENAKAS----DL-DSVRIVTSELDDA---KGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKE 351 (478)
Q Consensus 280 ~~~~~ei~~Lq~el~~~~~~----~~-~~v~~~~~ELee~---k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~ 351 (478)
.+....|.....+...+... |. .-+..++.+++++ +..|..+...+..+.....++..=|..++..|...+
T Consensus 875 ~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~- 953 (1822)
T KOG4674|consen 875 SELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETR- 953 (1822)
T ss_pred HHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 66666666666555555431 11 0123344444444 566666666666666655555555555555555554
Q ss_pred HHhhhHHHHhhHHHHHHHhHHHHHHhHHHHHHH-----------hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 011758 352 KEAETESIAGNLHVLLQKTKSELEACVVEEAKI-----------RGASEEMISSLHQLSLETENARQEAEEMKNKAMELK 420 (478)
Q Consensus 352 ~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eeka-----------~~~~~~L~~~Lqq~s~Eae~Ak~~a~~~~~el~~~k 420 (478)
......|..++.++..+..+|..+....... .+...++...+.-+..+.......+..+...+..++
T Consensus 954 --~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k 1031 (1822)
T KOG4674|consen 954 --LELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQ 1031 (1822)
T ss_pred --HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334444444444444444433333221111 122334444444455555555444444444444444
Q ss_pred HHHH
Q 011758 421 EEAG 424 (478)
Q Consensus 421 eE~E 424 (478)
....
T Consensus 1032 ~dl~ 1035 (1822)
T KOG4674|consen 1032 NDLK 1035 (1822)
T ss_pred HHHH
Confidence 3333
No 31
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.64 E-value=0.096 Score=53.25 Aligned_cols=264 Identities=21% Similarity=0.284 Sum_probs=123.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011758 57 ERVLAKETQLHLAQRELNKLKDQL-KNAEDTKAQAFVELEKAKRTVEDLSHKLKVVIESKESAIKVTEAAKIQAKQIEES 135 (478)
Q Consensus 57 e~~~~~e~ql~~~qeel~k~k~ql-~~aE~~k~~a~~EL~~ak~~~eeL~~kLe~a~~e~~~a~e~~e~~k~r~~Ele~~ 135 (478)
++|..++.+=..+..++..++... ......+.....+|..+++.|+++...--.+..+...
T Consensus 18 ekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~------------------ 79 (312)
T PF00038_consen 18 EKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDN------------------ 79 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhh------------------
Confidence 355555555555666666555552 2223345555566666666666555444333322222
Q ss_pred ccCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 136 NCSNPSGSDGARNQDLETEREKYTSVFSELAAAKQELRKIHQDCNSTLEAKVTAFNLAAAAENSAKANMERVSELSKEIS 215 (478)
Q Consensus 136 ~~~~~~~~~~a~k~eLe~~~~q~~~~~~eL~s~k~EL~kl~~el~~~~e~k~~A~~~aeea~~~~~~~~~~ve~L~~El~ 215 (478)
++.+++..+.+|....+....+..+|..++.+++...-.+ -....++..|..+|.
T Consensus 80 -----------l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r--------------~~le~~i~~L~eEl~ 134 (312)
T PF00038_consen 80 -----------LKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLAR--------------VDLENQIQSLKEELE 134 (312)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhH--------------hHHHHHHHHHHHHHH
Confidence 3334444555666666777777777777776665433332 234444555555554
Q ss_pred HHHHhHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 011758 216 TVQESIGQVKLATMQAQQEQ-AKVFAEKDLQRQSYKATLEESAKKLLALRNQFDPQLTQNLETQLTE-TMSEIAALQKQL 293 (478)
Q Consensus 216 ~~Ke~l~~~~~a~~~Aee~~-~~~~~~~~~~~~~~~~~lee~~~~l~~L~~e~~~el~k~LE~kL~~-~~~ei~~Lq~el 293 (478)
-++..++.- ......+. ..+..+-+ ..|... ...-|..++.+|+..+.++-. .+.. ....+..++...
T Consensus 135 fl~~~heeE---i~~L~~~~~~~~~~e~~---~~~~~d---L~~~L~eiR~~ye~~~~~~~~-e~e~~y~~k~~~l~~~~ 204 (312)
T PF00038_consen 135 FLKQNHEEE---IEELREQIQSSVTVEVD---QFRSSD---LSAALREIRAQYEEIAQKNRE-ELEEWYQSKLEELRQQS 204 (312)
T ss_dssp HHHHHHHHH---HHTTSTT----------------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhh---hhhhhhccccccceeec---cccccc---chhhhhhHHHHHHHHHhhhhh-hhhhhcccccccccccc
Confidence 444433210 00000000 00000000 011222 233444555565531222111 1111 222333334333
Q ss_pred HHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHH
Q 011758 294 ENAKASDLDSVRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSE 373 (478)
Q Consensus 294 ~~~~~~~~~~v~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~E 373 (478)
.... ..+..++.|+..++..+.....++.+++....+|...|..+...+..-. ......|..|..+|..++.+
T Consensus 205 ~~~~----~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~---~~~~~~i~~le~el~~l~~~ 277 (312)
T PF00038_consen 205 EKSS----EELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEER---EEYQAEIAELEEELAELREE 277 (312)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred cccc----cccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHH---HHHHHhhhccchhHHHHHHH
Confidence 3322 3456667777777777777777777777777777666666665555322 23345577777777777777
Q ss_pred HHHhHHH
Q 011758 374 LEACVVE 380 (478)
Q Consensus 374 Le~~~~~ 380 (478)
+......
T Consensus 278 ~~~~~~e 284 (312)
T PF00038_consen 278 MARQLRE 284 (312)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655433
No 32
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.61 E-value=0.21 Score=56.36 Aligned_cols=380 Identities=19% Similarity=0.237 Sum_probs=223.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH
Q 011758 58 RVLAKETQLHLAQRELNKLKDQLKNAEDTKAQAFVELEKAKRTVEDLSHKLKVVIESKESAIKVTEAAKIQ-------AK 130 (478)
Q Consensus 58 ~~~~~e~ql~~~qeel~k~k~ql~~aE~~k~~a~~EL~~ak~~~eeL~~kLe~a~~e~~~a~e~~e~~k~r-------~~ 130 (478)
+-..+...+..++-|++.++-.+. .+..|.++...+..++....+....++.+.+.+.--.|+| |-
T Consensus 28 ~E~~~~~~i~~l~~elk~~~~~~~-------~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dys 100 (717)
T PF09730_consen 28 KEAYLQQRILELENELKQLRQELS-------NVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYS 100 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 334444566666666666666554 4444555555555566666666666666666666666665 55
Q ss_pred HHHhhccCCCCCCchhhhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 131 QIEESNCSNPSGSDGARNQDLETERE---KYTSVFSELAAAKQELRKIHQDCNSTLEAKVTAFNLAAAAENSAKANMERV 207 (478)
Q Consensus 131 Ele~~~~~~~~~~~~a~k~eLe~~~~---q~~~~~~eL~s~k~EL~kl~~el~~~~e~k~~A~~~aeea~~~~~~~~~~v 207 (478)
+||...+. ++.++-+-|. .|...=-|+....+|+.-|+.+++.+..=|..+.++-++|--+++.--+.-
T Consensus 101 elEeENis--------lQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk 172 (717)
T PF09730_consen 101 ELEEENIS--------LQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQK 172 (717)
T ss_pred HHHHHHHH--------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655443 4555444443 455566677778888888888888899999999999999999999888888
Q ss_pred HHHHHHHHHHHH--hH---HhhHHHHHHH---HHHHHHHHHHHH-HHH-HHHHHH--HH--HHHHHHHHH-Hhc-cc--H
Q 011758 208 SELSKEISTVQE--SI---GQVKLATMQA---QQEQAKVFAEKD-LQR-QSYKAT--LE--ESAKKLLAL-RNQ-FD--P 269 (478)
Q Consensus 208 e~L~~El~~~Ke--~l---~~~~~a~~~A---ee~~~~~~~~~~-~~~-~~~~~~--le--e~~~~l~~L-~~e-~~--~ 269 (478)
..|+.||....- .+ .+++...... ..-.......-| ... ..|..- +. ........= ..+ +. |
T Consensus 173 ~~LrkEL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 252 (717)
T PF09730_consen 173 NALRKELDQHLNIESISYLSNLAISLDGLKFSEDPRAATEPNNDDEEENGGLNGGPGLAKGNGDNRMSTPRKSESFSPAP 252 (717)
T ss_pred HHHHHHHHHhcCccccccccchhhcccccccccccccccCCCCchhhhcchhhccchhcccccccccCCCCCCCCCCCCC
Confidence 899999987322 21 1111110000 000000000000 000 000000 00 000000000 000 00 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 011758 270 QLTQNLETQLTETMSEIAALQKQLENAKASDLDSVRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEH--- 346 (478)
Q Consensus 270 el~k~LE~kL~~~~~ei~~Lq~el~~~~~~~~~~v~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el--- 346 (478)
.+.-||=++|+ -++|..|+.++..+. ..-..+...|.+....|+.++.+.......+..|...|..++.-.
T Consensus 253 ~lv~DLfSEl~--~~EiqKL~qQL~qve----~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~k 326 (717)
T PF09730_consen 253 SLVSDLFSELN--LSEIQKLKQQLLQVE----REKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDK 326 (717)
T ss_pred cccchhhhhcc--hHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch
Confidence 33445555554 346777888887775 234567777888888888888888887777777777777666611
Q ss_pred ----------------------------HHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHHHHhhhHHHHHHHHHHh
Q 011758 347 ----------------------------SELKEKEAETESIAGNLHVLLQKTKSELEACVVEEAKIRGASEEMISSLHQL 398 (478)
Q Consensus 347 ----------------------------~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eeka~~~~~~L~~~Lqq~ 398 (478)
.-+..+.+.+-..+..|..+|..++.++..++..-.
T Consensus 327 e~~~~~d~~~~~~s~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~---------------- 390 (717)
T PF09730_consen 327 EQQSAEDSEKERDSHEDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYK---------------- 390 (717)
T ss_pred hhhhhhhcccccccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 122344455555566666666666666655543221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 011758 399 SLETENARQEAEEMKNKAMELKEEAGATKIALEEAEKKLRAALEEAEEAKGAETRALDRLRRCLRELVLHVHLLLNL 475 (478)
Q Consensus 399 s~Eae~Ak~~a~~~~~el~~~keE~E~akaei~~~E~rL~a~~kE~eaakasE~~Al~~l~~l~e~~~~~~~~~~~~ 475 (478)
.+...-+.....+...+..+..........+..++..|..+..-+--+.++-..|-+.|-.+++.....||..--|
T Consensus 391 -~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~c 466 (717)
T PF09730_consen 391 -QEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVCMC 466 (717)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1222223333444444555555555556688888888888888888888888899999999999988888876544
No 33
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.57 E-value=1.6e-05 Score=91.49 Aligned_cols=93 Identities=15% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhcccH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHh
Q 011758 248 SYKATLEESAKKLLALRNQFDP----------QLTQNLETQLTETMSEIAALQKQLENAKASDLDSVRIVTSELDDAKGS 317 (478)
Q Consensus 248 ~~~~~lee~~~~l~~L~~e~~~----------el~k~LE~kL~~~~~ei~~Lq~el~~~~~~~~~~v~~~~~ELee~k~~ 317 (478)
.|...+..+...+..++..|+. ++-+.|..+|.+....+..++..+..+. .....+..|++++...
T Consensus 289 ~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~Le----K~k~rL~~EleDl~~e 364 (859)
T PF01576_consen 289 ELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLE----KTKKRLQGELEDLTSE 364 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 4444444444444444444442 2233333345444444444444444333 2334566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 318 LQKVAEEESSLRNLVESLKVELENVKK 344 (478)
Q Consensus 318 L~~a~~E~~~l~~~v~sLr~ELe~~k~ 344 (478)
|++...-...|......+-..|...+.
T Consensus 365 Le~~~~~~~~LeKKqr~fDk~l~e~k~ 391 (859)
T PF01576_consen 365 LEKAQAAAAELEKKQRKFDKQLAEWKA 391 (859)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 666655544444433333333333333
No 34
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.54 E-value=0.27 Score=55.82 Aligned_cols=24 Identities=38% Similarity=0.430 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 418 ELKEEAGATKIALEEAEKKLRAAL 441 (478)
Q Consensus 418 ~~keE~E~akaei~~~E~rL~a~~ 441 (478)
.+++|++.++-.+.+++.|..++.
T Consensus 494 DLreEld~~~g~~kel~~r~~aaq 517 (1243)
T KOG0971|consen 494 DLREELDMAKGARKELQKRVEAAQ 517 (1243)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 566677777666666666666554
No 35
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.32 E-value=0.24 Score=50.34 Aligned_cols=39 Identities=10% Similarity=0.302 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Q 011758 198 NSAKANMERVSELSKEISTVQESIGQVKLATMQAQQEQA 236 (478)
Q Consensus 198 ~~~~~~~~~ve~L~~El~~~Ke~l~~~~~a~~~Aee~~~ 236 (478)
............+..++..++..++...+++...+.+..
T Consensus 89 ~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~ 127 (312)
T PF00038_consen 89 RKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQ 127 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHH
Confidence 333333555556666677777777776666666665554
No 36
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.25 E-value=0.4 Score=52.61 Aligned_cols=50 Identities=26% Similarity=0.324 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011758 247 QSYKATLEESAKKLLALRNQFD--PQLTQNLETQLTETMSEIAALQKQLENA 296 (478)
Q Consensus 247 ~~~~~~lee~~~~l~~L~~e~~--~el~k~LE~kL~~~~~ei~~Lq~el~~~ 296 (478)
..+..++...+.++..++.+++ ++..+.++..+......+..++..+..+
T Consensus 230 ~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~ 281 (562)
T PHA02562 230 KTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMY 281 (562)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555566666666666666544 1334444445555555555555554444
No 37
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.20 E-value=8.2e-05 Score=85.70 Aligned_cols=190 Identities=21% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH--HHHHHHHH
Q 011758 200 AKANMERVSELSKEISTVQESIGQVKLATMQAQQEQAKVFAEKDLQRQSYKATLEESAKKLLALRNQFDP--QLTQNLET 277 (478)
Q Consensus 200 ~~~~~~~ve~L~~El~~~Ke~l~~~~~a~~~Aee~~~~~~~~~~~~~~~~~~~lee~~~~l~~L~~e~~~--el~k~LE~ 277 (478)
.....+...-|+.|+..+.-.++.....+...++.+. .|-..+.+|+.++..+..+.+. .-...+..
T Consensus 344 ~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr-----------~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~t 412 (859)
T PF01576_consen 344 VSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQR-----------KFDKQLAEWKAKVEELQAERDAAQREARELET 412 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3344445555666666666666666555555444332 3444455555555555544441 01123333
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 011758 278 QLTETMSEIAALQKQLENAKASDLDSVRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETE 357 (478)
Q Consensus 278 kL~~~~~ei~~Lq~el~~~~~~~~~~v~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~ 357 (478)
++......+..+...+..+. .....+..+|.++...+..+...+..|......|-.++...+..+..+........
T Consensus 413 e~~~Lk~~lee~~e~~e~le----re~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E 488 (859)
T PF01576_consen 413 ELFKLKNELEELQEQLEELE----RENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEE 488 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhhhHHHHHHHHHHH----HHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333 23456667777777777766666777777777777777777777777777776777
Q ss_pred HHHhhHHHHHHHhHHHHHH-hHHHHHHHhhhHHHHHHHHHHhHHHHHH
Q 011758 358 SIAGNLHVLLQKTKSELEA-CVVEEAKIRGASEEMISSLHQLSLETEN 404 (478)
Q Consensus 358 ~~v~~L~~EL~k~k~ELe~-~~~~Eeka~~~~~~L~~~Lqq~s~Eae~ 404 (478)
..+..|..+|+.++.+++- +..+++.....-.++...|..+..+++.
T Consensus 489 ~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~ 536 (859)
T PF01576_consen 489 QKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEE 536 (859)
T ss_dssp ------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHH
Confidence 7777778888877777643 3444444444444555666666665544
No 38
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.10 E-value=0.63 Score=50.92 Aligned_cols=171 Identities=20% Similarity=0.192 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 011758 271 LTQNLETQLTETMSEIAALQKQLENAKASDLDSVRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHS--- 347 (478)
Q Consensus 271 l~k~LE~kL~~~~~ei~~Lq~el~~~~~~~~~~v~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~--- 347 (478)
...++++++.-....+..|.+++..++ .....+..+|..++..|+...---..+...+.+|..+|.-.+..+.
T Consensus 149 ~l~~leAe~~~~krr~~~le~e~~~Lk----~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI 224 (546)
T KOG0977|consen 149 RLSELEAEINTLKRRIKALEDELKRLK----AENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEI 224 (546)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHH----HHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHH
Confidence 344566666666666666666666665 3455666666666666665444445566666667777666663332
Q ss_pred -HHHHHHhhhH--HHHhhHHHHHHHhHHHHHHhHHHH-HHHhhhHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 348 -ELKEKEAETE--SIAGNLHVLLQKTKSELEACVVEE-AKIRGASE-EMISSLHQLSLETENARQEAEEMKNKAMELKEE 422 (478)
Q Consensus 348 -~l~~~e~~a~--~~v~~L~~EL~k~k~ELe~~~~~E-eka~~~~~-~L~~~Lqq~s~Eae~Ak~~a~~~~~el~~~keE 422 (478)
+++..-.... -.-.-.+.+|...-.+|-+=.+.. ...+..++ -+...|+.+..-++-+-.....+++++..++..
T Consensus 225 ~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~ 304 (546)
T KOG0977|consen 225 EEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSR 304 (546)
T ss_pred HHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhc
Confidence 2222111111 112334444444444433322221 12333333 345567777766666666777777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011758 423 AGATKIALEEAEKKLRAALEEAE 445 (478)
Q Consensus 423 ~E~akaei~~~E~rL~a~~kE~e 445 (478)
+..+++.+..++.+-..+-+.++
T Consensus 305 i~~Lr~klselE~~n~~L~~~I~ 327 (546)
T KOG0977|consen 305 ISGLRAKLSELESRNSALEKRIE 327 (546)
T ss_pred ccchhhhhccccccChhHHHHHH
Confidence 87777777776666655554443
No 39
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.94 E-value=0.96 Score=50.24 Aligned_cols=79 Identities=19% Similarity=0.163 Sum_probs=59.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011758 58 RVLAKETQLHLAQRELNKLKDQLKNAEDTKAQAFVELEKAKRTVEDLSHKLKVVIESKESAIKVTEAAKIQAKQIEESNC 137 (478)
Q Consensus 58 ~~~~~e~ql~~~qeel~k~k~ql~~aE~~k~~a~~EL~~ak~~~eeL~~kLe~a~~e~~~a~e~~e~~k~r~~Ele~~~~ 137 (478)
....++..|.-+...+.+|+=...... =..+-+-|..+...+..+...|.........-.......+.+|++|.+.+.
T Consensus 80 ~~~~ie~~l~~ae~~~~~~~f~~a~~~--~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll 157 (569)
T PRK04778 80 SLPDIEEQLFEAEELNDKFRFRKAKHE--INEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLL 157 (569)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777664443333 256777788888888888888888888888888888899999999987754
Q ss_pred C
Q 011758 138 S 138 (478)
Q Consensus 138 ~ 138 (478)
.
T Consensus 158 ~ 158 (569)
T PRK04778 158 A 158 (569)
T ss_pred h
Confidence 3
No 40
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.92 E-value=1.2 Score=50.97 Aligned_cols=126 Identities=23% Similarity=0.253 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhH--------HHHHHHHH-----
Q 011758 167 AAKQELRKIHQDCNSTLEAKVTAFNLAAAAENSAKANMERVSELSKEISTVQESIGQVK--------LATMQAQQ----- 233 (478)
Q Consensus 167 s~k~EL~kl~~el~~~~e~k~~A~~~aeea~~~~~~~~~~ve~L~~El~~~Ke~l~~~~--------~a~~~Aee----- 233 (478)
.-+.|+..+.--++++--.|.-|..+|+..........+++++|...|.-+|.+++.-- -..-+.+.
T Consensus 301 ~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rL 380 (1243)
T KOG0971|consen 301 RYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARL 380 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHH
Confidence 33444444444455555666677778888888888888888888888888887754310 00001111
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011758 234 -----EQAKVFAEKDLQRQSYKATLEESAKKLLALRNQFDPQLTQNLETQLTETMSEIAALQKQLENAK 297 (478)
Q Consensus 234 -----~~~~~~~~~~~~~~~~~~~lee~~~~l~~L~~e~~~el~k~LE~kL~~~~~ei~~Lq~el~~~~ 297 (478)
......+....+.+....+++.-..++..|+..- ..|-.++....+-|..|++++-.+-
T Consensus 381 KdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~k-----E~Lsr~~d~aEs~iadlkEQVDAAl 444 (1243)
T KOG0971|consen 381 KDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQK-----ERLSRELDQAESTIADLKEQVDAAL 444 (1243)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1111233333344444445555555555555432 2444567777778888888886543
No 41
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.89 Score=49.29 Aligned_cols=209 Identities=22% Similarity=0.286 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 011758 203 NMERVSELSKEISTVQESIGQVKLATMQAQQEQAKVFAEKDLQRQSYKATLEESAKKLLALRNQFDPQLTQNLETQLTET 282 (478)
Q Consensus 203 ~~~~ve~L~~El~~~Ke~l~~~~~a~~~Aee~~~~~~~~~~~~~~~~~~~lee~~~~l~~L~~e~~~el~k~LE~kL~~~ 282 (478)
....|+.|..+|.++-+.++.+..+.++|-+-=-.++.++. .|+.+|+ .|++.+.-+
T Consensus 6 aeq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~------------------~Lkqq~e-----Eleaeyd~~ 62 (772)
T KOG0999|consen 6 AEQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKE------------------DLKQQLE-----ELEAEYDLA 62 (772)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHH-----HHHHHHHHH
Confidence 44567778888888877777776666665433222222222 2333333 333333334
Q ss_pred HHHHHHHHHHHHHhcccchHHHHH-----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 011758 283 MSEIAALQKQLENAKASDLDSVRI-----VTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETE 357 (478)
Q Consensus 283 ~~ei~~Lq~el~~~~~~~~~~v~~-----~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~ 357 (478)
..+++.+++-+..++..-. .+.. -..=|++.-.+=.....-+..|.+....++.+|.+++.+..++...-+..-
T Consensus 63 R~Eldqtkeal~q~~s~hk-k~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~ 141 (772)
T KOG0999|consen 63 RTELDQTKEALGQYRSQHK-KVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLK 141 (772)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444444433331100 0100 000111111111111223344555666666666666666666655444444
Q ss_pred HHHhhHHHHHHHhHHHHHHhHHHHHHHhhhHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 358 SIAGNLHVLLQKTKSELEACVVEEAKIRGASEEM---ISSLHQLSLETENARQEAEEMKNKAMELKEEAGATKIALEEAE 434 (478)
Q Consensus 358 ~~v~~L~~EL~k~k~ELe~~~~~Eeka~~~~~~L---~~~Lqq~s~Eae~Ak~~a~~~~~el~~~keE~E~akaei~~~E 434 (478)
-.-+.++.+-.+++++|-..+-.|.+.-..-..| .-.||+.-+-++.-..+.+.++-+..++-++++-....+++..
T Consensus 142 e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~ 221 (772)
T KOG0999|consen 142 ESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAI 221 (772)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666777778888877776665433333322 2347777777777888888888888888888888888887654
Q ss_pred H
Q 011758 435 K 435 (478)
Q Consensus 435 ~ 435 (478)
.
T Consensus 222 ~ 222 (772)
T KOG0999|consen 222 R 222 (772)
T ss_pred H
Confidence 3
No 42
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.88 E-value=1.1 Score=49.92 Aligned_cols=160 Identities=17% Similarity=0.191 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHh
Q 011758 303 SVRIVTSELDDAK-----GSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEAC 377 (478)
Q Consensus 303 ~v~~~~~ELee~k-----~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~ 377 (478)
.+..++..+.++. ..|+.+......+...++.|-.-|++.......+...-......+..+......+..+++.+
T Consensus 257 ~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l 336 (569)
T PRK04778 257 EIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRV 336 (569)
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666633 35666667777788888888888888888888888877777777788888888888888777
Q ss_pred HHH----HHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 378 VVE----EAKIRGASEEMISSLHQLSLETENARQEAEEMKNKAMELKEEAGATKIALEEAEKKLRAALEEAEEAKGAETR 453 (478)
Q Consensus 378 ~~~----Eeka~~~~~~L~~~Lqq~s~Eae~Ak~~a~~~~~el~~~keE~E~akaei~~~E~rL~a~~kE~eaakasE~~ 453 (478)
... +.. -....++...|..+.............-......+..+.+.....+..++.........+..-+..|..
T Consensus 337 ~~sY~l~~~e-~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~e 415 (569)
T PRK04778 337 KQSYTLNESE-LESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELE 415 (569)
T ss_pred HHccccCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655 111 122223334444444443333333333222344555555555555555555555555555555666666
Q ss_pred HHHHHHHHHh
Q 011758 454 ALDRLRRCLR 463 (478)
Q Consensus 454 Al~~l~~l~e 463 (478)
|...|..+..
T Consensus 416 Ar~kL~~~~~ 425 (569)
T PRK04778 416 AREKLERYRN 425 (569)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 43
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.88 E-value=1.3 Score=50.99 Aligned_cols=162 Identities=13% Similarity=0.268 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---------HHHHHHHHHHHHH--------------HHHHHH
Q 011758 67 HLAQRELNKLKDQLKNAEDTKAQ--AFVELEKAKRTVE---------DLSHKLKVVIESK--------------ESAIKV 121 (478)
Q Consensus 67 ~~~qeel~k~k~ql~~aE~~k~~--a~~EL~~ak~~~e---------eL~~kLe~a~~e~--------------~~a~e~ 121 (478)
.++.+-|..+.++|...|.+|.. .-++|++.+|.++ +...+|+++...+ ..+...
T Consensus 187 ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~ 266 (1200)
T KOG0964|consen 187 EKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDE 266 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHH
Confidence 56777788888888888777754 4567777776554 4555555554332 224555
Q ss_pred HHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 011758 122 TEAAKIQAKQIEESNCSNPSGSDGARNQDLETEREKYTSVFSELAAAKQELRKIHQDCNSTLEAKVTAFNLAAAAENSAK 201 (478)
Q Consensus 122 ~e~~k~r~~Ele~~~~~~~~~~~~a~k~eLe~~~~q~~~~~~eL~s~k~EL~kl~~el~~~~e~k~~A~~~aeea~~~~~ 201 (478)
++-.+..+.+|+..+. ..+.+.+.++.+++..+...-.+.=.+..++.+++.-...++.++..-......+.
T Consensus 267 ~~~~~~~i~ele~~l~--------~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~ 338 (1200)
T KOG0964|consen 267 SEDLKCEIKELENKLT--------NLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIE 338 (1200)
T ss_pred HHHHHhHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 6666666677766542 25566777777888888888888888888888888888888877777666666666
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Q 011758 202 ANMERVSELSKEISTVQESIGQVKLATMQAQQEQA 236 (478)
Q Consensus 202 ~~~~~ve~L~~El~~~Ke~l~~~~~a~~~Aee~~~ 236 (478)
.....+....-.+..+.+.....+......+....
T Consensus 339 e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~ 373 (1200)
T KOG0964|consen 339 EKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQR 373 (1200)
T ss_pred HHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 66666666666666655555555555555555443
No 44
>PRK01156 chromosome segregation protein; Provisional
Probab=96.87 E-value=1.4 Score=51.34 Aligned_cols=24 Identities=0% Similarity=0.065 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 157 KYTSVFSELAAAKQELRKIHQDCN 180 (478)
Q Consensus 157 q~~~~~~eL~s~k~EL~kl~~el~ 180 (478)
.|.....++...+.+|..+...+.
T Consensus 357 ~l~~~~~~~~~l~~~l~~~~~~~~ 380 (895)
T PRK01156 357 ELEGYEMDYNSYLKSIESLKKKIE 380 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555544444443
No 45
>PRK11637 AmiB activator; Provisional
Probab=96.82 E-value=0.94 Score=48.39 Aligned_cols=42 Identities=19% Similarity=0.299 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 304 VRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKE 345 (478)
Q Consensus 304 v~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~e 345 (478)
+.....+|...+..|+....+...+......-+.+|...+.+
T Consensus 175 l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e 216 (428)
T PRK11637 175 LKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNE 216 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444433333
No 46
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.75 E-value=1.7 Score=50.32 Aligned_cols=131 Identities=18% Similarity=0.297 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhHHhhHHHH
Q 011758 157 KYTSVFSELAAAKQELRKIHQDCNSTLEAKVTAFNLAAAAENSAK--------ANMERVSELSKEISTVQESIGQVKLAT 228 (478)
Q Consensus 157 q~~~~~~eL~s~k~EL~kl~~el~~~~e~k~~A~~~aeea~~~~~--------~~~~~ve~L~~El~~~Ke~l~~~~~a~ 228 (478)
.|-..+.++....+++...++++. ++..+++.+++....++ ..+.++.+|+++|...+..++......
T Consensus 735 e~~~~~~~~~~~~e~v~e~~~~Ik----e~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ 810 (1174)
T KOG0933|consen 735 EFHKLLDDLKELLEEVEESEQQIK----EKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKEL 810 (1174)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677778888888887777665 55567777777765555 467889999999988888777666655
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011758 229 MQAQQEQAKVFAEKDLQ---RQSYKATLEESAKKLLALRNQFDPQLTQNLETQLTETMSEIAALQKQLENA 296 (478)
Q Consensus 229 ~~Aee~~~~~~~~~~~~---~~~~~~~lee~~~~l~~L~~e~~~el~k~LE~kL~~~~~ei~~Lq~el~~~ 296 (478)
...+.+...+..+.++. ...++..+.+....+..|+.+++ +|++++.....++..++.++...
T Consensus 811 ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~-----~l~~kv~~~~~~~~~~~~el~~~ 876 (1174)
T KOG0933|consen 811 EKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELG-----NLEAKVDKVEKDVKKAQAELKDQ 876 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhHHhHHHHHHHHHHHH
Confidence 55555555444443322 22333344444444444444443 44444444444444444444433
No 47
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.62 E-value=1.8 Score=48.96 Aligned_cols=52 Identities=25% Similarity=0.290 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 406 RQEAEEMKNKAMELKEEAGATKIALEEAEKKLRAALEEAEEAKGAETRALDR 457 (478)
Q Consensus 406 k~~a~~~~~el~~~keE~E~akaei~~~E~rL~a~~kE~eaakasE~~Al~~ 457 (478)
++.-+.++.+|+++.+.+...+.....++.++.-..---+-|+-+-+.|+.+
T Consensus 409 ~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQ 460 (1265)
T KOG0976|consen 409 KKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQ 460 (1265)
T ss_pred cchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHH
Confidence 3334445556666666677777777777777776665566666666666544
No 48
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.42 E-value=2 Score=47.15 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011758 329 RNLVESLKVELENVKKEHS 347 (478)
Q Consensus 329 ~~~v~sLr~ELe~~k~el~ 347 (478)
...+..|++++......+.
T Consensus 305 ~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 305 KDKLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 49
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.42 E-value=0.77 Score=45.32 Aligned_cols=67 Identities=19% Similarity=0.322 Sum_probs=48.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 394 SLHQLSLETENARQEAEEMKNKAMELKEEAGATKIALEEAEKKLRAALEEAEEAKGAETRALDRLRR 460 (478)
Q Consensus 394 ~Lqq~s~Eae~Ak~~a~~~~~el~~~keE~E~akaei~~~E~rL~a~~kE~eaakasE~~Al~~l~~ 460 (478)
.+..+..|...|+.....+..++..+..+.+.....+.....++....+.+-+++++=..++..++-
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e 156 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE 156 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556777777777777777777777777777777777777777777777777776666666665
No 50
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.35 E-value=0.78 Score=41.67 Aligned_cols=62 Identities=31% Similarity=0.421 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHH
Q 011758 307 VTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQ 368 (478)
Q Consensus 307 ~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~ 368 (478)
.++++.-.+..+..+..+.++|...+.+|++|-+.+...+...+.+-....+...++..-|.
T Consensus 50 ~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~ 111 (140)
T PF10473_consen 50 SKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQ 111 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34444444444555555555555555555555555555555555555444444444443333
No 51
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.25 E-value=3.1 Score=47.62 Aligned_cols=81 Identities=9% Similarity=0.166 Sum_probs=45.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHH
Q 011758 147 RNQDLETEREKYTSVFSELAAAKQELRKIHQDCNSTLEAKVTAFNLAAAAENSAKANMERVSELSKEISTVQESIGQVKL 226 (478)
Q Consensus 147 ~k~eLe~~~~q~~~~~~eL~s~k~EL~kl~~el~~~~e~k~~A~~~aeea~~~~~~~~~~ve~L~~El~~~Ke~l~~~~~ 226 (478)
.+.+++.++.-+......-....+..++++..|.-+.......+.+=++.+.........+.++..+...++..++.+.-
T Consensus 401 ~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~ 480 (980)
T KOG0980|consen 401 SRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQR 480 (980)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433444444444555666666666666666666666666666666665555666666666666666655443
Q ss_pred H
Q 011758 227 A 227 (478)
Q Consensus 227 a 227 (478)
+
T Consensus 481 ~ 481 (980)
T KOG0980|consen 481 A 481 (980)
T ss_pred H
Confidence 3
No 52
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.18 E-value=3.9 Score=48.10 Aligned_cols=50 Identities=14% Similarity=0.028 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 159 TSVFSELAAAKQELRKIHQDCNSTLEAKVTAFNLAAAAENSAKANMERVS 208 (478)
Q Consensus 159 ~~~~~eL~s~k~EL~kl~~el~~~~e~k~~A~~~aeea~~~~~~~~~~ve 208 (478)
..+-+.|.+.+.|.+.+..-+..+...-+.|-+.|+.+...++....+++
T Consensus 1418 ~~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~ 1467 (1758)
T KOG0994|consen 1418 GDADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQME 1467 (1758)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666655554444444444444444444444443333333
No 53
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.87 E-value=2.1 Score=42.31 Aligned_cols=95 Identities=25% Similarity=0.363 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 011758 252 TLEESAKKLLALRNQFDPQLTQNLETQLTETMSEIAALQKQLENAKASDLDSVRIVTSELDDAKGSLQKVAEEESSLRNL 331 (478)
Q Consensus 252 ~lee~~~~l~~L~~e~~~el~k~LE~kL~~~~~ei~~Lq~el~~~~~~~~~~v~~~~~ELee~k~~L~~a~~E~~~l~~~ 331 (478)
.+...+.++++++.++. .++..+...+..+...+..+... .+...+..+..|+..++.++..+.+|+..++..
T Consensus 46 ~~~~~~~e~e~le~qv~-----~~e~ei~~~r~r~~~~e~kl~~v--~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~ 118 (239)
T COG1579 46 ALEALEIELEDLENQVS-----QLESEIQEIRERIKRAEEKLSAV--KDERELRALNIEIQIAKERINSLEDELAELMEE 118 (239)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555433 55556666666666666666333 344556667777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011758 332 VESLKVELENVKKEHSELKEKE 353 (478)
Q Consensus 332 v~sLr~ELe~~k~el~~l~~~e 353 (478)
..-|..++..++..+..+...-
T Consensus 119 ~~~l~~~i~~l~~~~~~~e~~~ 140 (239)
T COG1579 119 IEKLEKEIEDLKERLERLEKNL 140 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666555443
No 54
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.72 E-value=7.1 Score=47.35 Aligned_cols=100 Identities=22% Similarity=0.308 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHH-HH
Q 011758 305 RIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEE-AK 383 (478)
Q Consensus 305 ~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~E-ek 383 (478)
..++..++.+...|.........+...+......++..+.++.........+...+.+|..+...++.++....... ..
T Consensus 603 e~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 682 (1201)
T PF12128_consen 603 EELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQ 682 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666677777777777777777777777777777777777776666666677777777777777666665443 23
Q ss_pred HhhhHHHHHHHHHHhHHHHHH
Q 011758 384 IRGASEEMISSLHQLSLETEN 404 (478)
Q Consensus 384 a~~~~~~L~~~Lqq~s~Eae~ 404 (478)
.......+...+.++..+...
T Consensus 683 ~~~~l~~l~~~l~~~~~e~~~ 703 (1201)
T PF12128_consen 683 IEEQLNELEEELKQLKQELEE 703 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444333
No 55
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=95.62 E-value=5 Score=44.86 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=18.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 147 RNQDLETEREKYTSVFSELAAAKQELRK 174 (478)
Q Consensus 147 ~k~eLe~~~~q~~~~~~eL~s~k~EL~k 174 (478)
--.++..++.+|+.+++++..+...|..
T Consensus 336 ~~Ee~nk~k~~~s~~v~e~qtti~~L~~ 363 (786)
T PF05483_consen 336 QMEELNKAKAQHSFVVTELQTTICNLKE 363 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666777777777777766665553
No 56
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.52 E-value=1.9 Score=39.31 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=20.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 313 DAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKE 353 (478)
Q Consensus 313 e~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e 353 (478)
.+.......-.|+.+|...+..|-.+|+.+...+..++..-
T Consensus 25 ~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l 65 (143)
T PF12718_consen 25 QLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKL 65 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444555555555555555555555555444433
No 57
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=95.45 E-value=5.7 Score=44.43 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=24.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 011758 147 RNQDLETEREKYTSVFSELAAAKQELRKIHQDCNSTL 183 (478)
Q Consensus 147 ~k~eLe~~~~q~~~~~~eL~s~k~EL~kl~~el~~~~ 183 (478)
+-+.+..........+.|-+.++.|+..|+.+++..+
T Consensus 407 ~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l 443 (961)
T KOG4673|consen 407 YHQRVATLEKKVQALTKERDALRREQKSLKKELAAAL 443 (961)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 4444555555666677777777777777777776544
No 58
>PRK01156 chromosome segregation protein; Provisional
Probab=95.33 E-value=7.8 Score=45.30 Aligned_cols=18 Identities=6% Similarity=0.193 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011758 67 HLAQRELNKLKDQLKNAE 84 (478)
Q Consensus 67 ~~~qeel~k~k~ql~~aE 84 (478)
..+...+..++.++...+
T Consensus 308 ~~l~~~l~~l~~~l~~~e 325 (895)
T PRK01156 308 ENKKQILSNIDAEINKYH 325 (895)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444333
No 59
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.33 E-value=6 Score=43.94 Aligned_cols=77 Identities=17% Similarity=0.215 Sum_probs=46.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011758 58 RVLAKETQLHLAQRELNKLKDQLKNAEDTKAQAFVELEKAKRTVEDLSHKLKVVIESKESAIKVTEAAKIQAKQIEESN 136 (478)
Q Consensus 58 ~~~~~e~ql~~~qeel~k~k~ql~~aE~~k~~a~~EL~~ak~~~eeL~~kLe~a~~e~~~a~e~~e~~k~r~~Ele~~~ 136 (478)
...+++..|..+...+.+|+=.. +...=..+...|..+...+..+...|.........-+......+.+|+++.+..
T Consensus 76 ~~~~ie~~L~~ae~~~~~~rf~k--a~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~l 152 (560)
T PF06160_consen 76 QLPEIEEQLFEAEEYADKYRFKK--AKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKEL 152 (560)
T ss_pred hhHHHHHHHHHHHHHHhcccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666665554322 222224556666666666777777777766666666666677777777766544
No 60
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.30 E-value=8.5 Score=45.51 Aligned_cols=55 Identities=15% Similarity=0.286 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 011758 164 ELAAAKQELRKIHQDCNSTLEAKVTAFNLAAAAENSAKANMERVSELSKEISTVQESIG 222 (478)
Q Consensus 164 eL~s~k~EL~kl~~el~~~~e~k~~A~~~aeea~~~~~~~~~~ve~L~~El~~~Ke~l~ 222 (478)
+|-..-++|+.|--++. ++.+.+..++......+....+++.|..+-.+.+..-+
T Consensus 1505 ~lp~tpeqi~~L~~~I~----e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~ 1559 (1758)
T KOG0994|consen 1505 ELPLTPEQIQQLTGEIQ----ERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAE 1559 (1758)
T ss_pred cCCCCHHHHHHHHHHHH----HHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHH
Confidence 34455666666555544 44455666666666666666666666555555444433
No 61
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.14 E-value=7.8 Score=44.18 Aligned_cols=28 Identities=14% Similarity=0.187 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 403 ENARQEAEEMKNKAMELKEEAGATKIAL 430 (478)
Q Consensus 403 e~Ak~~a~~~~~el~~~keE~E~akaei 430 (478)
-+||+..+.++..++.--.||..+|+.|
T Consensus 625 g~akrq~ei~~~~~~~~d~ei~~lk~ki 652 (697)
T PF09726_consen 625 GDAKRQLEIAQGQLRKKDKEIEELKAKI 652 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 62
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=94.98 E-value=3.5 Score=39.34 Aligned_cols=138 Identities=22% Similarity=0.268 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHH
Q 011758 303 SVRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEA 382 (478)
Q Consensus 303 ~v~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Ee 382 (478)
.+..+...|.+++.--+.+-..-.-.-. .|--+...|.+...+--.+.+.+..|..++..+.+.|..+...++
T Consensus 61 ~~e~~e~qLkEAk~iaE~adrK~eEVar-------kL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee 133 (205)
T KOG1003|consen 61 KMEAQEAQLKEAKHIAEKADRKYEEVAR-------KLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEE 133 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 4556666666666544433211111111 122233444555566666778899999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 383 KIRGASEEMISSLHQLSLETENARQEAEEMKNKAMELKEEAGATKIALEEAEKKLRAALEEAEEA 447 (478)
Q Consensus 383 ka~~~~~~L~~~Lqq~s~Eae~Ak~~a~~~~~el~~~keE~E~akaei~~~E~rL~a~~kE~eaa 447 (478)
+....-+.+-..|..++.-+.+|...++.+...++.+..+++...-.....-.++..+.+++.-+
T Consensus 134 ~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~ 198 (205)
T KOG1003|consen 134 KLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDET 198 (205)
T ss_pred HHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 88888888899999999999999999999999999999988888888888888888887777654
No 63
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.92 E-value=6.3 Score=41.99 Aligned_cols=42 Identities=31% Similarity=0.310 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 413 KNKAMELKEEAGATKIALEEAEKKLRAALEEAEEAKGAETRA 454 (478)
Q Consensus 413 ~~el~~~keE~E~akaei~~~E~rL~a~~kE~eaakasE~~A 454 (478)
+..+..++.....++..|..++...-.+....+|+++++..+
T Consensus 223 q~~l~eL~~~~~~L~~~Ias~e~~aA~~re~~aa~~aa~~~~ 264 (420)
T COG4942 223 QKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAARA 264 (420)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556667777777777777766666666777777777777
No 64
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.86 E-value=6 Score=41.46 Aligned_cols=73 Identities=15% Similarity=0.185 Sum_probs=55.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011758 149 QDLETEREKYTSVFSELAAAKQELRKIHQDCNSTLEAKVTAFNLAAAAENSAKANMERVSELSKEISTVQESI 221 (478)
Q Consensus 149 ~eLe~~~~q~~~~~~eL~s~k~EL~kl~~el~~~~e~k~~A~~~aeea~~~~~~~~~~ve~L~~El~~~Ke~l 221 (478)
.++..++..|+.+..+|..+...-+.++..+..+.+.+.....++.......+..--.++.|..+..+++-.-
T Consensus 123 ~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~ 195 (499)
T COG4372 123 QELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRS 195 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555578888888888888888888888888888888888888877777777777788877777766543
No 65
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=94.68 E-value=0.0088 Score=68.04 Aligned_cols=34 Identities=18% Similarity=0.347 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHH
Q 011758 200 AKANMERVSELSKEISTVQESIGQVKLATMQAQQ 233 (478)
Q Consensus 200 ~~~~~~~ve~L~~El~~~Ke~l~~~~~a~~~Aee 233 (478)
+......+..|..++..++..++.......+++.
T Consensus 180 ~~~~e~~~~~l~~e~~~l~~~le~~~~~~~e~e~ 213 (722)
T PF05557_consen 180 AENAESQIQSLESELEELKEQLEELQSELQEAEQ 213 (722)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666555444433333
No 66
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.54 E-value=3.6 Score=37.45 Aligned_cols=107 Identities=22% Similarity=0.258 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHH
Q 011758 329 RNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEAKIRGASEEMISSLHQLSLETENARQE 408 (478)
Q Consensus 329 ~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eeka~~~~~~L~~~Lqq~s~Eae~Ak~~ 408 (478)
...+..|..+....-.++..|..+...+...|..+...|..++..++.. .+....+++|...++.+-.+++.+...
T Consensus 20 e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~----~~~~~~~E~l~rriq~LEeele~ae~~ 95 (143)
T PF12718_consen 20 EAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEES----EKRKSNAEQLNRRIQLLEEELEEAEKK 95 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 3333334444444444444444444333333444444444443333332 233445667888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 409 AEEMKNKAMELKEEAGATKIALEEAEKKLRA 439 (478)
Q Consensus 409 a~~~~~el~~~keE~E~akaei~~~E~rL~a 439 (478)
...+...++.+...++..-..+..++.+...
T Consensus 96 L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~ 126 (143)
T PF12718_consen 96 LKETTEKLREADVKAEHFERKVKALEQERDQ 126 (143)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhHHH
Confidence 8877777777777777666665555444433
No 67
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.48 E-value=8.2 Score=45.01 Aligned_cols=144 Identities=19% Similarity=0.218 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHhHHHHHHH
Q 011758 248 SYKATLEESAKKLLALRNQFDPQLTQNLET--QLTETMSEIAALQKQLENAKASD-LDSVRIVTSELDDAKGSLQKVAEE 324 (478)
Q Consensus 248 ~~~~~lee~~~~l~~L~~e~~~el~k~LE~--kL~~~~~ei~~Lq~el~~~~~~~-~~~v~~~~~ELee~k~~L~~a~~E 324 (478)
+....+......+..|+...+ .+.+++|. +-.-..+.|.+|.....-.+=-+ .+....++..-+-++..+.+...+
T Consensus 192 ~Le~~~~~~~~~l~~L~~~~~-~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~ 270 (1072)
T KOG0979|consen 192 SLEDKLTTKTEKLNRLEDEID-KLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAKKELRKLEKE 270 (1072)
T ss_pred HHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555555 35555554 22223344555544322111000 012233333333333444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHHHHhhhHHHHH
Q 011758 325 ESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEAKIRGASEEMI 392 (478)
Q Consensus 325 ~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eeka~~~~~~L~ 392 (478)
+.-+....+-|+++..........+..--..+...+...-+++.....++...+.+.+-.+.......
T Consensus 271 ~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq 338 (1072)
T KOG0979|consen 271 IKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQ 338 (1072)
T ss_pred hhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444444444444333333333333
No 68
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=94.29 E-value=4.3 Score=42.57 Aligned_cols=75 Identities=23% Similarity=0.233 Sum_probs=62.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHHHHhhhHH
Q 011758 315 KGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEAKIRGASE 389 (478)
Q Consensus 315 k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eeka~~~~~ 389 (478)
...|+++..=...+...++.|..+....+..+..++.+-+.++..|..+..+|+++..+|+.++..-+.-...|.
T Consensus 251 ~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mt 325 (359)
T PF10498_consen 251 SKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMT 325 (359)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 344566666667788899999999999999999999999999999999999999999999999887544433443
No 69
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=94.29 E-value=11 Score=41.90 Aligned_cols=34 Identities=12% Similarity=0.079 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 011758 190 FNLAAAAENSAKANMERVSELSKEISTVQESIGQ 223 (478)
Q Consensus 190 ~~~aeea~~~~~~~~~~ve~L~~El~~~Ke~l~~ 223 (478)
+..-+.|...+-..++.++.|...+.-.+.+...
T Consensus 241 m~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~ 274 (629)
T KOG0963|consen 241 MTELEDAQQRIVFLEREVEQLREQLAKANSSKKL 274 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 3344444444445555555555555555544433
No 70
>PRK09039 hypothetical protein; Validated
Probab=94.22 E-value=5.3 Score=41.59 Aligned_cols=16 Identities=19% Similarity=0.173 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHhHHH
Q 011758 305 RIVTSELDDAKGSLQK 320 (478)
Q Consensus 305 ~~~~~ELee~k~~L~~ 320 (478)
.....+|......|..
T Consensus 49 ~~~~~eL~~L~~qIa~ 64 (343)
T PRK09039 49 SGKDSALDRLNSQIAE 64 (343)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3444444444444443
No 71
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=94.00 E-value=12 Score=41.51 Aligned_cols=48 Identities=23% Similarity=0.359 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHH
Q 011758 328 LRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELE 375 (478)
Q Consensus 328 l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe 375 (478)
+...+..+..+.......+..|...|..|...+..+...|..++..++
T Consensus 384 ~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le 431 (560)
T PF06160_consen 384 IEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE 431 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555565665555555555555555544
No 72
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.91 E-value=22 Score=44.09 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 65 QLHLAQRELNKLKDQLKNAEDTKAQAFVELEKAKRTVEDLSHKLKVVIESKESAI 119 (478)
Q Consensus 65 ql~~~qeel~k~k~ql~~aE~~k~~a~~EL~~ak~~~eeL~~kLe~a~~e~~~a~ 119 (478)
+...+-++...|+.+...+...-..+..-|.+...++.++..++..+......+.
T Consensus 280 ERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~ 334 (1486)
T PRK04863 280 ERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAAS 334 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666666666666667777777777777766666665
No 73
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=93.88 E-value=14 Score=41.58 Aligned_cols=21 Identities=29% Similarity=0.514 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011758 89 QAFVELEKAKRTVEDLSHKLK 109 (478)
Q Consensus 89 ~a~~EL~~ak~~~eeL~~kLe 109 (478)
.+..+|+++++.|..|+..|+
T Consensus 343 ~~q~eLdK~~~~i~~Ln~~le 363 (961)
T KOG4673|consen 343 DVQLELDKTKKEIKMLNNALE 363 (961)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999988
No 74
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.84 E-value=17 Score=42.70 Aligned_cols=54 Identities=19% Similarity=0.276 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011758 302 DSVRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAE 355 (478)
Q Consensus 302 ~~v~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~ 355 (478)
..+.....|+.+++..+..+..+...|...+.++.+.+++...+...+...=+.
T Consensus 849 ~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL~~ckl 902 (1141)
T KOG0018|consen 849 SKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERKESERHNLLSKCKL 902 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhh
Confidence 567778889999999999999999999999999999999999988877665443
No 75
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.83 E-value=23 Score=43.97 Aligned_cols=58 Identities=21% Similarity=0.199 Sum_probs=40.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 57 ERVLAKETQLHLAQRELNKLKDQLKNAEDTKAQAFVELEKAKRTVEDLSHKLKVVIESK 115 (478)
Q Consensus 57 e~~~~~e~ql~~~qeel~k~k~ql~~aE~~k~~a~~EL~~ak~~~eeL~~kLe~a~~e~ 115 (478)
+|+.-++ +..........+.+.+...+.-..++-+.+......+..|..+++.+..-.
T Consensus 280 ERR~liE-EAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyl 337 (1486)
T PRK04863 280 ERRVHLE-EALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHL 337 (1486)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 335566777777777877777777777777777777777777777776433
No 76
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=93.65 E-value=6.9 Score=37.40 Aligned_cols=169 Identities=20% Similarity=0.218 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcccch----------HHHHHHHHHHHHHH
Q 011758 248 SYKATLEESAKKLLALRNQFDP--QLTQNLETQLTETMSEIAALQKQLENAKASDL----------DSVRIVTSELDDAK 315 (478)
Q Consensus 248 ~~~~~lee~~~~l~~L~~e~~~--el~k~LE~kL~~~~~ei~~Lq~el~~~~~~~~----------~~v~~~~~ELee~k 315 (478)
+|+..+..+..+|..+.+.-+. -.+|.|++........+..+..+++.++.... -.+.-+..+|+.+.
T Consensus 22 ~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~e 101 (205)
T KOG1003|consen 22 RAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAE 101 (205)
T ss_pred HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4444444444555555444331 35666666666555556666666655543211 12344555666555
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHHHHhhhHHHHHHHH
Q 011758 316 GSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEAKIRGASEEMISSL 395 (478)
Q Consensus 316 ~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eeka~~~~~~L~~~L 395 (478)
.+.+..-..... |--++..+...+-.|...+..++.....+..+|.-+...|-.+ ....+-+-..+
T Consensus 102 eraE~~Es~~~e-------LeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEa-------E~rAE~aERsV 167 (205)
T KOG1003|consen 102 ERAEAAESQSEE-------LEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEA-------ETRAEFAERRV 167 (205)
T ss_pred HHHHHHHHHHHH-------HHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh-------hhhHHHHHHHH
Confidence 555544333333 3334444444444444444444444444555554444433222 22233333555
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 396 HQLSLETENARQEAEEMKNKAMELKEEAGATKIAL 430 (478)
Q Consensus 396 qq~s~Eae~Ak~~a~~~~~el~~~keE~E~akaei 430 (478)
+.+..+.+.-......++.+...+..++.++...+
T Consensus 168 akLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~~L 202 (205)
T KOG1003|consen 168 AKLEKERDDLEEKLEEAKEKYEEAKKELDETLQEL 202 (205)
T ss_pred HHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555555555555555555555555555443
No 77
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=93.38 E-value=22 Score=42.44 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 64 TQLHLAQRELNKLKDQLKNAEDTKAQAFVELEKAKRTVEDLSHKLKVVI 112 (478)
Q Consensus 64 ~ql~~~qeel~k~k~ql~~aE~~k~~a~~EL~~ak~~~eeL~~kLe~a~ 112 (478)
.+...+|.+.+.+.+++...+..|..+...+...++.++.+..+...+.
T Consensus 487 ~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~ 535 (1317)
T KOG0612|consen 487 EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAA 535 (1317)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666688888888888888887777776666666666555555544443
No 78
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.25 E-value=6.4 Score=35.81 Aligned_cols=95 Identities=23% Similarity=0.280 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 272 TQNLETQLTETMSEIAALQKQLENAKASDLDSVRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKE 351 (478)
Q Consensus 272 ~k~LE~kL~~~~~ei~~Lq~el~~~~~~~~~~v~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~ 351 (478)
..+++.+|....+.-+.|+..+..+ ..+|+.+..+...+.-+...-+..+.+|..++..+..++..+..
T Consensus 5 ~l~v~~kLK~~~~e~dsle~~v~~L-----------EreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~ 73 (140)
T PF10473_consen 5 FLHVEEKLKESESEKDSLEDHVESL-----------ERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLEL 73 (140)
T ss_pred HHHHHHHHHHHHHhHhhHHHHHHHH-----------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778888888888877755544 44555555444444444444444444444444444444444444
Q ss_pred HHhhhHHHHhhHHHHHHHhHHHHHHh
Q 011758 352 KEAETESIAGNLHVLLQKTKSELEAC 377 (478)
Q Consensus 352 ~e~~a~~~v~~L~~EL~k~k~ELe~~ 377 (478)
.-...++.-.+|...+++.+..+..+
T Consensus 74 EL~~l~sEk~~L~k~lq~~q~kv~eL 99 (140)
T PF10473_consen 74 ELDTLRSEKENLDKELQKKQEKVSEL 99 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455555555554444443
No 79
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=92.86 E-value=20 Score=40.39 Aligned_cols=102 Identities=24% Similarity=0.280 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHhcccch---HHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 279 LTETMSEIAALQKQLENAKASDL---DSVRIVTSELDDAK-------GSLQKVAEEESSLRNLVESLKVELENVKKEHSE 348 (478)
Q Consensus 279 L~~~~~ei~~Lq~el~~~~~~~~---~~v~~~~~ELee~k-------~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~ 348 (478)
|......|..|+.++.....+++ ..|..++.||+.-+ .+....--|-.++.-...+...++......+.-
T Consensus 445 lq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~ 524 (786)
T PF05483_consen 445 LQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINN 524 (786)
T ss_pred HHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 33444455566666655554443 23555666665422 122222234444555556666666666666666
Q ss_pred HHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHH
Q 011758 349 LKEKEAETESIAGNLHVLLQKTKSELEACVVE 380 (478)
Q Consensus 349 l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~ 380 (478)
-+.++-..-..|++|...-..++.+|+.++..
T Consensus 525 ~k~qee~~~kqie~Lee~~~~Lrneles~~ee 556 (786)
T PF05483_consen 525 SKKQEEKMLKQIENLEETNTQLRNELESVKEE 556 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666667777777777777777776654
No 80
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.79 E-value=13 Score=38.27 Aligned_cols=21 Identities=14% Similarity=0.007 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011758 92 VELEKAKRTVEDLSHKLKVVI 112 (478)
Q Consensus 92 ~EL~~ak~~~eeL~~kLe~a~ 112 (478)
.=|+-..-...+|+..+....
T Consensus 68 P~Lely~~~c~EL~~~I~egr 88 (325)
T PF08317_consen 68 PMLELYQFSCRELKKYISEGR 88 (325)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 345555566667776666654
No 81
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=92.71 E-value=0.032 Score=63.40 Aligned_cols=67 Identities=15% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHhhHHHHHH
Q 011758 164 ELAAAKQELRKIHQDCNSTLEAKVTAFNLAAAAENSAKANMERVSELS---KEISTVQESIGQVKLATMQ 230 (478)
Q Consensus 164 eL~s~k~EL~kl~~el~~~~e~k~~A~~~aeea~~~~~~~~~~ve~L~---~El~~~Ke~l~~~~~a~~~ 230 (478)
.+..++..+..++.++...-+.++..-.+++.....+.....++.+|. .+...++..++-++.....
T Consensus 240 ~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r 309 (713)
T PF05622_consen 240 ELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADR 309 (713)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344455666666666654444444333344444444444444444443 3334444445444433333
No 82
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=92.64 E-value=13 Score=37.81 Aligned_cols=50 Identities=26% Similarity=0.297 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhH
Q 011758 329 RNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACV 378 (478)
Q Consensus 329 ~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~ 378 (478)
...+.-|.+++...+.....+.++-...+..++.++.++..+-.+...++
T Consensus 157 ~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~R 206 (294)
T COG1340 157 NEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELR 206 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666666666666666666777777777666655554
No 83
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=92.29 E-value=28 Score=40.83 Aligned_cols=113 Identities=15% Similarity=0.240 Sum_probs=73.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011758 56 AERVLAKETQLHLAQRELNKLKDQLKNAEDTKAQAFVELEKAKRTVEDLSHKLKVVIESKESAIKVTEAAKIQAKQIEES 135 (478)
Q Consensus 56 ~e~~~~~e~ql~~~qeel~k~k~ql~~aE~~k~~a~~EL~~ak~~~eeL~~kLe~a~~e~~~a~e~~e~~k~r~~Ele~~ 135 (478)
+....++...+.-+.+-+.+++.+++..=.--.+.-+||+..+..++-|.......+.++.++.. ..- .+..+.++
T Consensus 169 ~~~~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~--yrd--eldalre~ 244 (1195)
T KOG4643|consen 169 VKKNLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADR--YRD--ELDALREQ 244 (1195)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhh--HHHHHHHh
Confidence 34667888899889999999988887654445667778888888888888888888777777641 000 11112111
Q ss_pred ccCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011758 136 NCSNPSGSDGARNQDLETEREKYTSVFSELAAAKQELRKIHQDCNSTLEAKV 187 (478)
Q Consensus 136 ~~~~~~~~~~a~k~eLe~~~~q~~~~~~eL~s~k~EL~kl~~el~~~~e~k~ 187 (478)
-+.+...|...+-+++.+|.-+..++.+-..++++|.
T Consensus 245 ---------------aer~d~~ykerlmDs~fykdRveelkedN~vLleeke 281 (1195)
T KOG4643|consen 245 ---------------AERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKE 281 (1195)
T ss_pred ---------------hhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 1111235666677777777777777777666666653
No 84
>PRK09039 hypothetical protein; Validated
Probab=91.85 E-value=18 Score=37.68 Aligned_cols=61 Identities=16% Similarity=0.245 Sum_probs=24.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHH
Q 011758 309 SELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQK 369 (478)
Q Consensus 309 ~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k 369 (478)
.+|.+.+.......-.+..|+..++.||..|..+...+..++.+......++..|...|+.
T Consensus 123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~ 183 (343)
T PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNV 183 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334444444444444444444444444443333333333333333
No 85
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.58 E-value=28 Score=39.34 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011758 331 LVESLKVELENVKKEHSELKEKE 353 (478)
Q Consensus 331 ~v~sLr~ELe~~k~el~~l~~~e 353 (478)
.+..+..++..+..++..+..+.
T Consensus 392 ~~~~~~~~~~~~e~el~~l~~~l 414 (650)
T TIGR03185 392 AKSQLLKELRELEEELAEVDKKI 414 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 86
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=91.06 E-value=0.065 Score=61.00 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 419 LKEEAGATKIALEEAEKKLRAALEEAEEAK 448 (478)
Q Consensus 419 ~keE~E~akaei~~~E~rL~a~~kE~eaak 448 (478)
...|+..++..+.+.+.++..+-++.+.+|
T Consensus 620 ~~~e~~~L~~ql~e~~~~i~~lE~~~e~~k 649 (713)
T PF05622_consen 620 SSPEIQALKKQLQEKDRRIESLEKELEKSK 649 (713)
T ss_dssp ------------------------------
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 334444444455555555555555554444
No 87
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.79 E-value=36 Score=39.14 Aligned_cols=52 Identities=19% Similarity=0.208 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhH
Q 011758 320 KVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTK 371 (478)
Q Consensus 320 ~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k 371 (478)
.+.+....+...-.-+-.++...+..+..++++-+.....|..+++++..++
T Consensus 831 a~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~ 882 (970)
T KOG0946|consen 831 AAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLE 882 (970)
T ss_pred hhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHH
Confidence 3333444444444455666667777777777776666666666666666554
No 88
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=90.78 E-value=15 Score=35.45 Aligned_cols=98 Identities=19% Similarity=0.297 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011758 280 TETMSEIAALQKQLENAKAS---DLDSVRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAET 356 (478)
Q Consensus 280 ~~~~~ei~~Lq~el~~~~~~---~~~~v~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a 356 (478)
.+.+.+|..|+-+++..+.- -...+-+++..|.+++..+......+..+..+..+=..+|+.-..++......-...
T Consensus 6 Cqk~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lL 85 (202)
T PF06818_consen 6 CQKSGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELL 85 (202)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHh
Confidence 34566777777777665531 012345666667777777776666666666666666666666666666655444444
Q ss_pred HHHHhhHHHHHHHhHHHHHHh
Q 011758 357 ESIAGNLHVLLQKTKSELEAC 377 (478)
Q Consensus 357 ~~~v~~L~~EL~k~k~ELe~~ 377 (478)
.-.+..|..++..++..+..+
T Consensus 86 rekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 86 REKLGQLEAELAELREELACA 106 (202)
T ss_pred hhhhhhhHHHHHHHHHHHHhh
Confidence 445555555565555555544
No 89
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=90.73 E-value=12 Score=33.44 Aligned_cols=28 Identities=32% Similarity=0.502 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 317 SLQKVAEEESSLRNLVESLKVELENVKK 344 (478)
Q Consensus 317 ~L~~a~~E~~~l~~~v~sLr~ELe~~k~ 344 (478)
.+..+..........+.+++.+|.....
T Consensus 11 e~~~~~~~~~~~~~~~~~~~~dl~~q~~ 38 (132)
T PF07926_consen 11 ELQRLKEQEEDAEEQLQSLREDLESQAK 38 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 90
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.64 E-value=36 Score=38.93 Aligned_cols=141 Identities=26% Similarity=0.331 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHHHHhh
Q 011758 307 VTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEAKIRG 386 (478)
Q Consensus 307 ~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eeka~~ 386 (478)
++.+++++....+....|+..|...+..+...|.++--+.+.|-.+.+... .-+..-..-+++|+++..+-+-++.
T Consensus 470 ~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q----~a~~~~~~~~s~L~aa~~~ke~irq 545 (1118)
T KOG1029|consen 470 QKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQ----SAHKETTQRKSELEAARRKKELIRQ 545 (1118)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh----hhccCcchHHHHHHHHHHHHHHHHH
Confidence 444444445555544455555555555555555555444444433322111 1111111112333333333222222
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 011758 387 ASEEMISSLHQLSLETENARQEAEEMKNKAMELKEEAGATKIALEEAEKKLRAALE-EAEEAKGAETRALDRLRRC 461 (478)
Q Consensus 387 ~~~~L~~~Lqq~s~Eae~Ak~~a~~~~~el~~~keE~E~akaei~~~E~rL~a~~k-E~eaakasE~~Al~~l~~l 461 (478)
.+...|..++.|++.-..+.+.....+.+++++. ......++..-+ +-+.-|.+|.-++..++--
T Consensus 546 ---~ikdqldelskE~esk~~eidi~n~qlkelk~~~-------~~q~lake~~yk~e~d~~ke~et~~lel~~~k 611 (1118)
T KOG1029|consen 546 ---AIKDQLDELSKETESKLNEIDIFNNQLKELKEDV-------NSQQLAKEELYKNERDKLKEAETKALELIGEK 611 (1118)
T ss_pred ---HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 2333444445555544444444444444444333 222233333333 4455566666666665543
No 91
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.50 E-value=37 Score=38.84 Aligned_cols=123 Identities=19% Similarity=0.248 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHH
Q 011758 303 SVRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEA 382 (478)
Q Consensus 303 ~v~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Ee 382 (478)
.+..+..-|.++.-.+...+.++..+....+.-.+|+.+++..+.+++++....-..-+.|+..|....+-+-.-.
T Consensus 452 k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~---- 527 (1118)
T KOG1029|consen 452 KLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETT---- 527 (1118)
T ss_pred HHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcc----
Confidence 3444555666777778888888888888888888888888887777777665555555555555544332211100
Q ss_pred HHhhhHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 383 KIRGASEEMISSLHQLSLETENARQEAEE----MKNKAMELKEEAGATKIALEEAEKKLRAALEE 443 (478)
Q Consensus 383 ka~~~~~~L~~~Lqq~s~Eae~Ak~~a~~----~~~el~~~keE~E~akaei~~~E~rL~a~~kE 443 (478)
. -.++++.+....++ ++..+..+..|++.-..+|+.....+..+...
T Consensus 528 -------~-------~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~ 578 (1118)
T KOG1029|consen 528 -------Q-------RKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKED 578 (1118)
T ss_pred -------h-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 0 01233333333333 33456677777777777777777666665533
No 92
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=89.64 E-value=41 Score=38.02 Aligned_cols=103 Identities=16% Similarity=0.197 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCch
Q 011758 66 LHLAQRELNKLKDQLKNAEDTKAQAFVELEKAKRTVEDLSHKLKVVIESKESAIKVTEAAKIQAKQIEESNCSNPSGSDG 145 (478)
Q Consensus 66 l~~~qeel~k~k~ql~~aE~~k~~a~~EL~~ak~~~eeL~~kLe~a~~e~~~a~e~~e~~k~r~~Ele~~~~~~~~~~~~ 145 (478)
++.+..+|..|..+... +..-..+..+++.....+.++..+++.............+.+..++.++++..... | +
T Consensus 184 ~~~L~~dl~~~~~~~~~-~~~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~--G--G 258 (650)
T TIGR03185 184 IDRLAGDLTNVLRRRKK-SELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSE--G--G 258 (650)
T ss_pred HHHHHHHHHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--c--c
Confidence 56678888887766543 22345677888888888888888888888777777777777777777777644332 1 3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011758 146 ARNQDLETEREKYTSVFSELAAAKQELR 173 (478)
Q Consensus 146 a~k~eLe~~~~q~~~~~~eL~s~k~EL~ 173 (478)
.|..+.+..+.+....-.++......+.
T Consensus 259 ~~~~~r~~Le~ei~~le~e~~e~~~~l~ 286 (650)
T TIGR03185 259 DLFEEREQLERQLKEIEAARKANRAQLR 286 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555433333344444444444433333
No 93
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=89.29 E-value=47 Score=38.22 Aligned_cols=159 Identities=19% Similarity=0.224 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHH
Q 011758 305 RIVTSELDDAKGSLQKVA----EEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVE 380 (478)
Q Consensus 305 ~~~~~ELee~k~~L~~a~----~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~ 380 (478)
....++|++.-..+..++ +|.+.....|..+..+|+.++....+.-+.- ...-.-|+.+--+++.++..++-.
T Consensus 262 q~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gds---eqatkylh~enmkltrqkadirc~ 338 (1265)
T KOG0976|consen 262 QASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDS---EQATKYLHLENMKLTRQKADIRCA 338 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554444333 6888888899999999999988877765443 333456677777777777777777
Q ss_pred HHHHhhhHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 011758 381 EAKIRGASEEMISSLHQLSLETENARQEAE-------EMKNKAMELKEEAGATKIALEEAE---KKLRAALEEAEEAKGA 450 (478)
Q Consensus 381 Eeka~~~~~~L~~~Lqq~s~Eae~Ak~~a~-------~~~~el~~~keE~E~akaei~~~E---~rL~a~~kE~eaakas 450 (478)
--+++-..+++...++.+...-+.|-.-+. ..+.+++.+.++.......|+... .++....+.-|+||--
T Consensus 339 LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kne 418 (1265)
T KOG0976|consen 339 LLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNE 418 (1265)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHH
Confidence 667777788888888777776555433333 334456666666666666666544 4566667888999999
Q ss_pred HHHHHHHHHHHHhhhh
Q 011758 451 ETRALDRLRRCLRELV 466 (478)
Q Consensus 451 E~~Al~~l~~l~e~~~ 466 (478)
-..|++++..|--+-+
T Consensus 419 L~~a~ekld~mgthl~ 434 (1265)
T KOG0976|consen 419 LQEALEKLDLMGTHLS 434 (1265)
T ss_pred HHHHHHHHHHHhHHHH
Confidence 9999998887654433
No 94
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=89.01 E-value=60 Score=39.05 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011758 327 SLRNLVESLKVELENVKKEHSEL 349 (478)
Q Consensus 327 ~l~~~v~sLr~ELe~~k~el~~l 349 (478)
.+...+..+..+++++..+...+
T Consensus 671 ~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 671 KLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666665555
No 95
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.60 E-value=43 Score=36.86 Aligned_cols=110 Identities=17% Similarity=0.221 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 011758 203 NMERVSELSKEISTVQESIGQVKLATMQAQQEQAKVFAEKDLQRQSYKATLEESAKKLLALRNQFDPQLTQNLETQLTET 282 (478)
Q Consensus 203 ~~~~ve~L~~El~~~Ke~l~~~~~a~~~Aee~~~~~~~~~~~~~~~~~~~lee~~~~l~~L~~e~~~el~k~LE~kL~~~ 282 (478)
..+.|+.-..+.-+++|-+..+..+.-+++.... .|+...-+...-...+.+ -.++||--|...
T Consensus 329 ~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~-----------dlkehassLas~glk~ds-----~Lk~leIalEqk 392 (654)
T KOG4809|consen 329 RLEEIESFRKENKDLKEKVNALQAELTEKESSLI-----------DLKEHASSLASAGLKRDS-----KLKSLEIALEQK 392 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhhhhhh-----hhhHHHHHHHHH
Confidence 3344555555566666666655555444444433 333333223333333333 345777778888
Q ss_pred HHHHHHHHHHHHHhcccch---------HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 011758 283 MSEIAALQKQLENAKASDL---------DSVRIVTSELDDAKGSLQKVAEEESSL 328 (478)
Q Consensus 283 ~~ei~~Lq~el~~~~~~~~---------~~v~~~~~ELee~k~~L~~a~~E~~~l 328 (478)
..++..+..++.++|.... +-+.-+.++...++..+.++..++..+
T Consensus 393 kEec~kme~qLkkAh~~~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrl 447 (654)
T KOG4809|consen 393 KEECSKMEAQLKKAHNIEDDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRL 447 (654)
T ss_pred HHHHHHHHHHHHHHHHhhHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999988886533 223455555566665555555555443
No 96
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=88.39 E-value=30 Score=36.33 Aligned_cols=94 Identities=16% Similarity=0.186 Sum_probs=77.6
Q ss_pred HHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH------HHHH
Q 011758 345 EHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEAKIRGASEEMISSLHQLSLETENARQEAEEMKN------KAME 418 (478)
Q Consensus 345 el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eeka~~~~~~L~~~Lqq~s~Eae~Ak~~a~~~~~------el~~ 418 (478)
.+..+.-+|+....+...+-.+....+.+|..++.+-..+...+..++..|.+++.+++..|.+.+.--. =+.+
T Consensus 253 ~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~ 332 (359)
T PF10498_consen 253 TLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVK 332 (359)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHH
Confidence 4556677888888899999999999999999999998888999999999999999999999888776222 4557
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 011758 419 LKEEAGATKIALEEAEKKLR 438 (478)
Q Consensus 419 ~keE~E~akaei~~~E~rL~ 438 (478)
+|.=+-+++.+|.+|..|+=
T Consensus 333 IKqAl~kLk~EI~qMdvrIG 352 (359)
T PF10498_consen 333 IKQALTKLKQEIKQMDVRIG 352 (359)
T ss_pred HHHHHHHHHHHHHHhhhhhh
Confidence 77777888888888877753
No 97
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=88.24 E-value=0.45 Score=54.28 Aligned_cols=29 Identities=31% Similarity=0.422 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 411 EMKNKAMELKEEAGATKIALEEAEKKLRA 439 (478)
Q Consensus 411 ~~~~el~~~keE~E~akaei~~~E~rL~a 439 (478)
.++.++..+..++..+...+..++.+|.-
T Consensus 507 ~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 507 ELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555666666666655555543
No 98
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=87.42 E-value=26 Score=35.26 Aligned_cols=74 Identities=20% Similarity=0.170 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHH
Q 011758 307 VTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVE 380 (478)
Q Consensus 307 ~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~ 380 (478)
-+.+.-.++.....+.+.-..|...-.-|..+|..-...+.-+......+--.|..|+.++.+++++|+-.+..
T Consensus 58 ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~ 131 (307)
T PF10481_consen 58 EKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQA 131 (307)
T ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333334444444444555556666666677766666666777777777778888888888888888866543
No 99
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=87.24 E-value=57 Score=36.81 Aligned_cols=18 Identities=11% Similarity=0.169 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011758 413 KNKAMELKEEAGATKIAL 430 (478)
Q Consensus 413 ~~el~~~keE~E~akaei 430 (478)
+..+.-+..+++++++.+
T Consensus 292 qe~Lea~~qqNqqL~~ql 309 (617)
T PF15070_consen 292 QEHLEALSQQNQQLQAQL 309 (617)
T ss_pred HHHHHHHHhhhHHHHHHH
Confidence 333333444444444443
No 100
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.72 E-value=55 Score=36.11 Aligned_cols=73 Identities=19% Similarity=0.223 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHH
Q 011758 161 VFSELAAAKQELRKIHQDCNSTLEAKVTAFNLAAAAENSAKANMERVSELSKEISTVQESIGQVKLATMQAQQ 233 (478)
Q Consensus 161 ~~~eL~s~k~EL~kl~~el~~~~e~k~~A~~~aeea~~~~~~~~~~ve~L~~El~~~Ke~l~~~~~a~~~Aee 233 (478)
+..+++-.+.++.+|..+|+.+-.++-.|.+--=+.-..-.....+.++|..++..++-.++..+-+..+..-
T Consensus 6 aeq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s 78 (772)
T KOG0999|consen 6 AEQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRS 78 (772)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677777777777766666644433222222233355566666666666666666665555554433
No 101
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=86.00 E-value=30 Score=32.39 Aligned_cols=9 Identities=22% Similarity=0.423 Sum_probs=3.3
Q ss_pred HHHHHHHHh
Q 011758 257 AKKLLALRN 265 (478)
Q Consensus 257 ~~~l~~L~~ 265 (478)
+..+..+..
T Consensus 87 ~~~l~~l~~ 95 (191)
T PF04156_consen 87 QQQLQQLQE 95 (191)
T ss_pred HHHHHHHHH
Confidence 333333333
No 102
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=85.97 E-value=34 Score=32.92 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 407 QEAEEMKNKAMELKEEAGATKIALEE 432 (478)
Q Consensus 407 ~~a~~~~~el~~~keE~E~akaei~~ 432 (478)
.....+...+..+....|..-+.+.+
T Consensus 143 ~kn~lLEkKl~~l~~~lE~keaqL~e 168 (201)
T PF13851_consen 143 LKNLLLEKKLQALSEQLEKKEAQLNE 168 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666665555553
No 103
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=85.76 E-value=54 Score=35.10 Aligned_cols=32 Identities=9% Similarity=0.199 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011758 151 LETEREKYTSVFSELAAAKQELRKIHQDCNST 182 (478)
Q Consensus 151 Le~~~~q~~~~~~eL~s~k~EL~kl~~el~~~ 182 (478)
|..++..++..-..+....++..+|..++..+
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~ 71 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSL 71 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555555433
No 104
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=85.31 E-value=38 Score=32.87 Aligned_cols=70 Identities=16% Similarity=0.141 Sum_probs=40.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHH
Q 011758 310 ELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVV 379 (478)
Q Consensus 310 ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~ 379 (478)
++..+...-+-+..+.+++..+...|-...++.|..+..++.++...-..+..+...+........++++
T Consensus 70 ~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~ 139 (207)
T PF05010_consen 70 EIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKA 139 (207)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444455555566666666666666666666666666666666666666666665555555544
No 105
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=85.17 E-value=77 Score=36.34 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 328 LRNLVESLKVELENVKKEHSELKE 351 (478)
Q Consensus 328 l~~~v~sLr~ELe~~k~el~~l~~ 351 (478)
++.....|..|+.+++.++....+
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee 566 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEE 566 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555444433
No 106
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=84.93 E-value=50 Score=34.00 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=14.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 314 AKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELK 350 (478)
Q Consensus 314 ~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~ 350 (478)
++.....+......+...+..|+.....++.++..++
T Consensus 156 l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~ 192 (312)
T smart00787 156 LKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLK 192 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444444444444444433
No 107
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=84.85 E-value=28 Score=31.00 Aligned_cols=43 Identities=23% Similarity=0.236 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 011758 157 KYTSVFSELAAAKQELRKIHQDCNSTLEAKVTAFNLAAAAENS 199 (478)
Q Consensus 157 q~~~~~~eL~s~k~EL~kl~~el~~~~e~k~~A~~~aeea~~~ 199 (478)
.|+.++..|..++.++..++.++..+....+.+...-......
T Consensus 53 ~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~s 95 (132)
T PF07926_consen 53 KHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEAS 95 (132)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6999999999999999999999988887777776655544443
No 108
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=84.76 E-value=35 Score=31.98 Aligned_cols=11 Identities=27% Similarity=0.531 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 011758 335 LKVELENVKKE 345 (478)
Q Consensus 335 Lr~ELe~~k~e 345 (478)
+.........+
T Consensus 135 l~~~~~~~~~e 145 (191)
T PF04156_consen 135 LDESIKELEKE 145 (191)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 109
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=84.49 E-value=11 Score=35.85 Aligned_cols=74 Identities=23% Similarity=0.387 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 274 NLETQLTETMSEIAALQKQLENAKASDLDSVRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKE 351 (478)
Q Consensus 274 ~LE~kL~~~~~ei~~Lq~el~~~~~~~~~~v~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~ 351 (478)
.++.++......|..|+.++..+. ..+..+..+|.+....++.+.+|...|.-....+...+..++.+...|-+
T Consensus 106 ~l~~~~~~~~~~l~~l~~~~~~L~----~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 106 ELEKELSEKERRLAELEAELAQLE----EKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp --------HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555554 35556666777777777777777777777777777777777777666644
No 110
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=84.29 E-value=85 Score=36.12 Aligned_cols=102 Identities=15% Similarity=0.171 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cC--CCCCCchhhhhhhHHH
Q 011758 78 DQLKNAEDTKAQAFVELEKAKRTVEDLSHKLKVVIESKESAIKVTEAAKIQAKQIEESN-CS--NPSGSDGARNQDLETE 154 (478)
Q Consensus 78 ~ql~~aE~~k~~a~~EL~~ak~~~eeL~~kLe~a~~e~~~a~e~~e~~k~r~~Ele~~~-~~--~~~~~~~a~k~eLe~~ 154 (478)
.+.......+.+=+.+|...+...+.++..-+++..--..+.+--+.-..|+..+-+.. .. ..+..+..|+.||+.+
T Consensus 565 ~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~ 644 (717)
T PF10168_consen 565 RRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERM 644 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 34444455555555566665555555554444444333333333344444555442221 11 1233457899999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 155 REKYTSVFSELAAAKQELRKIHQDC 179 (478)
Q Consensus 155 ~~q~~~~~~eL~s~k~EL~kl~~el 179 (478)
+.+....-.-++.++.-+++.+..+
T Consensus 645 ~~~l~~l~~si~~lk~k~~~Q~~~i 669 (717)
T PF10168_consen 645 KDQLQDLKASIEQLKKKLDYQQRQI 669 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877666666666666666544433
No 111
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=84.13 E-value=1.2e+02 Score=37.62 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Q 011758 159 TSVFSELAAAKQELRKIHQDCNST 182 (478)
Q Consensus 159 ~~~~~eL~s~k~EL~kl~~el~~~ 182 (478)
..+-.++.++..++...+..+...
T Consensus 796 ~~A~~~~~~a~~~l~~a~~~l~~a 819 (1353)
T TIGR02680 796 AEAERQAESAERELARAARKAAAA 819 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444433
No 112
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=83.10 E-value=58 Score=33.25 Aligned_cols=49 Identities=12% Similarity=0.179 Sum_probs=23.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 011758 175 IHQDCNSTLEAKVTAFNLAAAAENSAKANMERVSELSKEISTVQESIGQ 223 (478)
Q Consensus 175 l~~el~~~~e~k~~A~~~aeea~~~~~~~~~~ve~L~~El~~~Ke~l~~ 223 (478)
++.+.....+.++..-.++.+....++.+-..-+++..+|..+|+.-..
T Consensus 32 l~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~e 80 (294)
T COG1340 32 LRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDE 80 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444455555555555555555555555444444433
No 113
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=82.78 E-value=27 Score=35.92 Aligned_cols=51 Identities=22% Similarity=0.210 Sum_probs=19.5
Q ss_pred HHHHhHHHHHHhHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 011758 366 LLQKTKSELEACVVEEAKIRGASEEMISSLHQLSLETENARQEAEEMKNKA 416 (478)
Q Consensus 366 EL~k~k~ELe~~~~~Eeka~~~~~~L~~~Lqq~s~Eae~Ak~~a~~~~~el 416 (478)
++..+..++..+...+...-.....+...+.+...+.+........+...+
T Consensus 79 el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L 129 (314)
T PF04111_consen 79 ELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQL 129 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333344444444444444444443333333
No 114
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=82.71 E-value=61 Score=33.28 Aligned_cols=134 Identities=21% Similarity=0.239 Sum_probs=94.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHHHHh
Q 011758 310 ELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELK----EKEAETESIAGNLHVLLQKTKSELEACVVEEAKIR 385 (478)
Q Consensus 310 ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~----~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eeka~ 385 (478)
-++....++....+|-..|+..+..|+.+.......=..|- ..-..|+..|..|..+|.+-..+...-+.......
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Ll 240 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLL 240 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666667777777777777777665555444332 35677889999999999999999888888888888
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 386 GASEEMISSLHQLSLETENARQEAEEMKNKAMELKEEAGATKIALEEAEKKLRAALEE 443 (478)
Q Consensus 386 ~~~~~L~~~Lqq~s~Eae~Ak~~a~~~~~el~~~keE~E~akaei~~~E~rL~a~~kE 443 (478)
.-+.++...+++...|.+........++.--..+..|....+-.-.+...-|..+..|
T Consensus 241 sqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEE 298 (306)
T PF04849_consen 241 SQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEE 298 (306)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999888887777766655555555444444444444444444333
No 115
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=82.57 E-value=92 Score=35.20 Aligned_cols=43 Identities=19% Similarity=0.226 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHHHHhhh
Q 011758 345 EHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEAKIRGA 387 (478)
Q Consensus 345 el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eeka~~~ 387 (478)
-..+++..+......+.....+|..+...|+++.-.-...+..
T Consensus 266 l~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~q 308 (617)
T PF15070_consen 266 LMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQQLQAQ 308 (617)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3456666666666666677777777777777665544433333
No 116
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=82.52 E-value=63 Score=33.29 Aligned_cols=21 Identities=14% Similarity=0.007 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011758 92 VELEKAKRTVEDLSHKLKVVI 112 (478)
Q Consensus 92 ~EL~~ak~~~eeL~~kLe~a~ 112 (478)
.=|+-..-...||+..+....
T Consensus 63 P~LElY~~sC~EL~~~I~egr 83 (312)
T smart00787 63 PLLELYQFSCKELKKYISEGR 83 (312)
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 345556666667776666664
No 117
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=82.23 E-value=1.4e+02 Score=37.03 Aligned_cols=65 Identities=15% Similarity=0.192 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011758 157 KYTSVFSELAAAKQELRKIHQDCNSTLEAK--VTAFNLAAAAENSAKANMERVSELSKEISTVQESI 221 (478)
Q Consensus 157 q~~~~~~eL~s~k~EL~kl~~el~~~~e~k--~~A~~~aeea~~~~~~~~~~ve~L~~El~~~Ke~l 221 (478)
+....-.++..+...+..|..++.++-... ..|......+..........+......+......+
T Consensus 757 ~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~ 823 (1353)
T TIGR02680 757 ELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAAAAW 823 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444332221 12223333333344444444444444444443333
No 118
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=82.02 E-value=1.1e+02 Score=35.59 Aligned_cols=78 Identities=28% Similarity=0.400 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcccch---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011758 278 QLTETMSEIAALQKQLENAKASDL---DSVRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEA 354 (478)
Q Consensus 278 kL~~~~~ei~~Lq~el~~~~~~~~---~~v~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~ 354 (478)
+|.+....|..|+.++..++.+.. ..+...+.-.+.....+..+..|+..+...+.+|..||+..+.....+..+-.
T Consensus 625 qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~ 704 (769)
T PF05911_consen 625 QLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCR 704 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHH
Confidence 566666666666666665553311 11222222333334555566778899999999999999999888776655443
Q ss_pred h
Q 011758 355 E 355 (478)
Q Consensus 355 ~ 355 (478)
.
T Consensus 705 ~ 705 (769)
T PF05911_consen 705 E 705 (769)
T ss_pred H
Confidence 3
No 119
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=82.01 E-value=68 Score=35.10 Aligned_cols=11 Identities=18% Similarity=0.211 Sum_probs=4.4
Q ss_pred HHHHHHHHHhc
Q 011758 256 SAKKLLALRNQ 266 (478)
Q Consensus 256 ~~~~l~~L~~e 266 (478)
.+.+...|+.+
T Consensus 171 ~~een~~lr~k 181 (596)
T KOG4360|consen 171 LEEENTQLRSK 181 (596)
T ss_pred hHHHHHHHHHH
Confidence 33333444443
No 120
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=81.62 E-value=65 Score=32.83 Aligned_cols=75 Identities=24% Similarity=0.238 Sum_probs=65.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHHHHhhhHH
Q 011758 315 KGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEAKIRGASE 389 (478)
Q Consensus 315 k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eeka~~~~~ 389 (478)
...|+++..-..+|.+...+|-.+-..+...++.++.+-+.++.-|.+-...|+.+-.+++.++...++-...|.
T Consensus 258 t~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~ms 332 (384)
T KOG0972|consen 258 TKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMS 332 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 556777888888899999999999999999999999999999999999999999999999999888665555554
No 121
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=81.28 E-value=54 Score=31.67 Aligned_cols=47 Identities=28% Similarity=0.361 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 303 SVRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSEL 349 (478)
Q Consensus 303 ~v~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l 349 (478)
++.+...+|+.....|...+.|+..|+..+..|..++..++..+..+
T Consensus 60 ~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 60 SLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 45566777788888888888888888888888888888888888876
No 122
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=80.37 E-value=91 Score=33.69 Aligned_cols=79 Identities=11% Similarity=0.207 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHH
Q 011758 302 DSVRIVTSELDDAKGSLQKVAEE----------------ESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHV 365 (478)
Q Consensus 302 ~~v~~~~~ELee~k~~L~~a~~E----------------~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~ 365 (478)
+.+...+.+++.+..++..+... +......+..|..+|-..+.+|..|...-...+-+|..|..
T Consensus 242 D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~ 321 (434)
T PRK15178 242 ERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSA 321 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHH
Confidence 56778888888888888877754 44455688899999999999999887765566677888888
Q ss_pred HHHHhHHHHHHhHHH
Q 011758 366 LLQKTKSELEACVVE 380 (478)
Q Consensus 366 EL~k~k~ELe~~~~~ 380 (478)
.+..++.+|...+.+
T Consensus 322 rI~aLe~QIa~er~k 336 (434)
T PRK15178 322 KIKVLEKQIGEQRNR 336 (434)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888877777766544
No 123
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=79.98 E-value=66 Score=31.90 Aligned_cols=103 Identities=22% Similarity=0.237 Sum_probs=53.7
Q ss_pred hHHHHhhHHHHHHHhHHHHHHhHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 356 TESIAGNLHVLLQKTKSELEACVVEEAKIRGASEEMISSLHQLSLETENARQEAEEMKNKAMELKEEAGATKIALEEAEK 435 (478)
Q Consensus 356 a~~~v~~L~~EL~k~k~ELe~~~~~Eeka~~~~~~L~~~Lqq~s~Eae~Ak~~a~~~~~el~~~keE~E~akaei~~~E~ 435 (478)
+...+..|..++..+..+-..+..+... +....+.+..+..........+..++..+..++.....+....+.
T Consensus 31 ~e~~a~~Leek~k~aeeea~~Le~k~~e-------aee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~ 103 (246)
T PF00769_consen 31 SEETAEELEEKLKQAEEEAEELEQKRQE-------AEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEE 103 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555554443333222211 122223333333333344455666777777777777777777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011758 436 KLRAALEEAEEAKGAETRALDRLRRCLREL 465 (478)
Q Consensus 436 rL~a~~kE~eaakasE~~Al~~l~~l~e~~ 465 (478)
....+..++..|+..+..+-.++..++-..
T Consensus 104 Ea~~lq~el~~ar~~~~~ak~~L~~~~~~~ 133 (246)
T PF00769_consen 104 EAEELQEELEEAREDEEEAKEELLEVMSAP 133 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 888888888889888888888886665443
No 124
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=79.70 E-value=52 Score=30.56 Aligned_cols=130 Identities=20% Similarity=0.230 Sum_probs=86.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHHHHhhhHHHHHHHH
Q 011758 316 GSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEAKIRGASEEMISSL 395 (478)
Q Consensus 316 ~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eeka~~~~~~L~~~L 395 (478)
..++..+++++.+ .++.|.|.+..+.+|..++..-...-..|..|...-.+++..|..+... +
T Consensus 9 ~~ie~sK~qIf~I---~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~--------------f 71 (159)
T PF05384_consen 9 DTIESSKEQIFEI---AEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRN--------------F 71 (159)
T ss_pred HHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------h
Confidence 3455555666554 3456666666666666666666666667777777777777777666322 2
Q ss_pred HHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 396 HQL-SLETENARQEAEEMKNKAMELKEEAGATKIALEEAEKKLRAALEEAEEAKGAETRALDRLRRCL 462 (478)
Q Consensus 396 qq~-s~Eae~Ak~~a~~~~~el~~~keE~E~akaei~~~E~rL~a~~kE~eaakasE~~Al~~l~~l~ 462 (478)
..- ..+...|=..+..++-.+.-.+++-.+++..=+.++.+|..+..-++.|-..-----..|.+|+
T Consensus 72 ~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~ 139 (159)
T PF05384_consen 72 DRYSEEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLS 139 (159)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1245566667788888888999999999999999999999999888877543333333344443
No 125
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=79.53 E-value=43 Score=31.75 Aligned_cols=38 Identities=18% Similarity=0.138 Sum_probs=22.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 389 EEMISSLHQLSLETENARQEAEEMKNKAMELKEEAGAT 426 (478)
Q Consensus 389 ~~L~~~Lqq~s~Eae~Ak~~a~~~~~el~~~keE~E~a 426 (478)
.+....++-+..|..........+..+++.+..|...+
T Consensus 140 ~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 140 KEKNKANEILQDELQALQLQLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666666666666666666666554
No 126
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=79.46 E-value=96 Score=33.45 Aligned_cols=66 Identities=17% Similarity=0.244 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 150 DLETEREKYTSVFSELAAAKQELRKIHQDCNSTLEAKVTAFNLAAAAENSAKANMERVSELSKEISTV 217 (478)
Q Consensus 150 eLe~~~~q~~~~~~eL~s~k~EL~kl~~el~~~~e~k~~A~~~aeea~~~~~~~~~~ve~L~~El~~~ 217 (478)
+|++-+.-|...+.++.. .+|+..++.|.....+.+..-+.-..+...-+..+.+.-.+...+..+
T Consensus 329 qleSqr~y~e~~~~e~~q--sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~ 394 (493)
T KOG0804|consen 329 QLESQRKYYEQIMSEYEQ--SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKC 394 (493)
T ss_pred hhhHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444334444444333 444444444444444443333333333333334444444444444333
No 127
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=78.70 E-value=63 Score=30.88 Aligned_cols=65 Identities=28% Similarity=0.269 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 386 GASEEMISSLHQLSLETENARQEAEEMKNKAMELKEEAGATKIALEEAEKKLRAALEEAEEAKGA 450 (478)
Q Consensus 386 ~~~~~L~~~Lqq~s~Eae~Ak~~a~~~~~el~~~keE~E~akaei~~~E~rL~a~~kE~eaakas 450 (478)
.-+..|...|+....-...+...+...+.++..-..=.+.++..++.+...|..++.+.+..|.+
T Consensus 109 ~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~a 173 (188)
T PF05335_consen 109 QQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKKA 173 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444445555555555555555555555555555555555555555555433
No 128
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=77.58 E-value=95 Score=32.34 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 011758 275 LETQLTETMSEIAALQKQLE 294 (478)
Q Consensus 275 LE~kL~~~~~ei~~Lq~el~ 294 (478)
+..++......+..++.++.
T Consensus 79 ~~~~l~~l~~~~~~l~a~~~ 98 (423)
T TIGR01843 79 VEADAAELESQVLRLEAEVA 98 (423)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 34455555555555555443
No 129
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=77.28 E-value=1e+02 Score=32.63 Aligned_cols=47 Identities=23% Similarity=0.383 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 305 RIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKE 351 (478)
Q Consensus 305 ~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~ 351 (478)
..+..++.+++.++-++-.+...+....-.|+++|.++-.....+..
T Consensus 119 ~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~a 165 (499)
T COG4372 119 EAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEA 165 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888888888777777777777776666555543
No 130
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=76.26 E-value=55 Score=28.96 Aligned_cols=48 Identities=29% Similarity=0.302 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHh
Q 011758 323 EEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKT 370 (478)
Q Consensus 323 ~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~ 370 (478)
++.......+..|+.++..+...+..+.+--|+-+-.|..|..++.-+
T Consensus 61 e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~Dl 108 (120)
T PF12325_consen 61 EELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDL 108 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 344445555566666666666666666666666655555555555444
No 131
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=76.04 E-value=75 Score=30.42 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011758 328 LRNLVESLKVELENVKKEHSELK 350 (478)
Q Consensus 328 l~~~v~sLr~ELe~~k~el~~l~ 350 (478)
|-..|..|..+..++..+..-++
T Consensus 100 L~~~i~~Lqeen~kl~~e~~~lk 122 (193)
T PF14662_consen 100 LVAEIETLQEENGKLLAERDGLK 122 (193)
T ss_pred HHHHHHHHHHHHhHHHHhhhhHH
Confidence 33333333333333333333333
No 132
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=75.34 E-value=78 Score=30.24 Aligned_cols=122 Identities=17% Similarity=0.219 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 271 LTQNLETQLTETMSEIAALQKQLENAKASDLDSVRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELK 350 (478)
Q Consensus 271 l~k~LE~kL~~~~~ei~~Lq~el~~~~~~~~~~v~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~ 350 (478)
..+--++=|.....-++.|+.++...+ ..|......|..+..++..+..-....+..+..|+.=|+..+..+..+
T Consensus 54 aA~aAeAaL~GKq~iveqLe~ev~EAe----~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a- 128 (188)
T PF05335_consen 54 AAKAAEAALAGKQQIVEQLEQEVREAE----AVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANA- 128 (188)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 444555566666666677777766665 355555556655555555555544444444444444444444443333
Q ss_pred HHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 351 EKEAETESIAGNLHVLLQKTKSELEACVVEEAKIRGASEEMISSLHQLSLETENARQEAEEMKNKAMELKEEAGATKIAL 430 (478)
Q Consensus 351 ~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eeka~~~~~~L~~~Lqq~s~Eae~Ak~~a~~~~~el~~~keE~E~akaei 430 (478)
.....+....|..-..-++.|+...+.+...+...+.+.+.++...
T Consensus 129 ----------------------------------~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA 174 (188)
T PF05335_consen 129 ----------------------------------EQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKKAA 174 (188)
T ss_pred ----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233333444444445566677777777777777777777766544
Q ss_pred H
Q 011758 431 E 431 (478)
Q Consensus 431 ~ 431 (478)
.
T Consensus 175 ~ 175 (188)
T PF05335_consen 175 Y 175 (188)
T ss_pred H
Confidence 3
No 133
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=75.08 E-value=1.3e+02 Score=32.60 Aligned_cols=124 Identities=18% Similarity=0.168 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHH--HHhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 011758 333 ESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEA--KIRGASEEMISSLHQLSLETENARQEAE 410 (478)
Q Consensus 333 ~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Ee--ka~~~~~~L~~~Lqq~s~Eae~Ak~~a~ 410 (478)
..++..|...+.++..+..+-+.-.-.+..+..++..++..+......-. ...... ....++.+.......+....
T Consensus 250 ~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~ 327 (498)
T TIGR03007 250 SELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEI--ANPVYQQLQIELAEAEAEIA 327 (498)
T ss_pred CchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhccccccCcccccc--cChHHHHHHHHHHHHHHHHH
Confidence 35666677777777777666666666666666666666665443221000 000000 00112223233333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 411 EMKNKAMELKEEAGATKIALE---EAEKKLRAALEEAEEAKGAETRALDRL 458 (478)
Q Consensus 411 ~~~~el~~~keE~E~akaei~---~~E~rL~a~~kE~eaakasE~~Al~~l 458 (478)
.++..+..+..+.+..+..+. ..+..+..+.++.+.++..=...+..+
T Consensus 328 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~ 378 (498)
T TIGR03007 328 SLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRR 378 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334434333333333 455666666666666655444444443
No 134
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=74.65 E-value=83 Score=30.23 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q 011758 202 ANMERVSELSKEISTVQESI 221 (478)
Q Consensus 202 ~~~~~ve~L~~El~~~Ke~l 221 (478)
.|...+..|..+|..++.-.
T Consensus 24 ~NL~lIksLKeei~emkk~e 43 (201)
T PF13851_consen 24 NNLELIKSLKEEIAEMKKKE 43 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555666666665555544
No 135
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=74.31 E-value=1.1e+02 Score=31.63 Aligned_cols=51 Identities=16% Similarity=0.279 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHh
Q 011758 327 SLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEAC 377 (478)
Q Consensus 327 ~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~ 377 (478)
.....+..|+.++..++.++..+...-....-.+..+..++..++..|...
T Consensus 211 ~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e 261 (362)
T TIGR01010 211 AQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQ 261 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 344456677777777777777766555444555666666666666665544
No 136
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=74.31 E-value=84 Score=30.12 Aligned_cols=128 Identities=14% Similarity=0.121 Sum_probs=73.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011758 58 RVLAKETQLHLAQRELNKLKDQLKNAEDTKAQAFVELEKAKRTVEDLSHKLKVVIESKESAIKVTEAAKIQAKQIEESNC 137 (478)
Q Consensus 58 ~~~~~e~ql~~~qeel~k~k~ql~~aE~~k~~a~~EL~~ak~~~eeL~~kLe~a~~e~~~a~e~~e~~k~r~~Ele~~~~ 137 (478)
.+.+++..=..+..+..+++..+..++-.-++...|+...++.+..+..-|..+. -..+..+.
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK----~l~eEled------------- 71 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAK----ALEEELED------------- 71 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH-------------
Confidence 3455566666789999999999999999888888888887777766543332221 11111222
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 138 SNPSGSDGARNQDLETEREKYTSVFSELAAAKQELRKIHQDCNSTLEAKVTAFNLAAAAENSAKANMERVSELS 211 (478)
Q Consensus 138 ~~~~~~~~a~k~eLe~~~~q~~~~~~eL~s~k~EL~kl~~el~~~~e~k~~A~~~aeea~~~~~~~~~~ve~L~ 211 (478)
++.-+.+..+++...++.......|-+.|-.++..+-++...-....+-....+++....-..|.
T Consensus 72 ---------Lk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq 136 (193)
T PF14662_consen 72 ---------LKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQ 136 (193)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHH
Confidence 22223333345555666666666666666666666655555544444444433333333333333
No 137
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=74.24 E-value=88 Score=30.34 Aligned_cols=103 Identities=20% Similarity=0.222 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 011758 337 VELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEAKIRGASEEMISSLHQLSLETENARQEAEEMKNKA 416 (478)
Q Consensus 337 ~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eeka~~~~~~L~~~Lqq~s~Eae~Ak~~a~~~~~el 416 (478)
.++..+..+.+.+...-.........|+....+++.-++..+..|+..+..+.++...|.+...--...+..++ ..+
T Consensus 69 ~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAe---ekL 145 (207)
T PF05010_consen 69 AEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAE---EKL 145 (207)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 33444444444444444445556678888889999999999999988888888888777776654444443333 455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 417 MELKEEAGATKIALEEAEKKLRAALE 442 (478)
Q Consensus 417 ~~~keE~E~akaei~~~E~rL~a~~k 442 (478)
..+-+++.+.+.....=-..|++.++
T Consensus 146 ~~ANeei~~v~~~~~~e~~aLqa~lk 171 (207)
T PF05010_consen 146 EKANEEIAQVRSKHQAELLALQASLK 171 (207)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 55555555555554443344444443
No 138
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=73.80 E-value=87 Score=30.07 Aligned_cols=85 Identities=11% Similarity=0.145 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 011758 201 KANMERVSELSKEISTVQESIGQVKLATMQAQQEQAKVFAEKDLQRQSYKATLEESAKKLLALRNQFDPQLTQNLETQLT 280 (478)
Q Consensus 201 ~~~~~~ve~L~~El~~~Ke~l~~~~~a~~~Aee~~~~~~~~~~~~~~~~~~~lee~~~~l~~L~~e~~~el~k~LE~kL~ 280 (478)
.....-|.++...|..++..+..+.+.....+.+.. .+......|..+...-=...+..+++..-.+..
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~-----------~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~ 94 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLD-----------EAEEEAEKWEKQAELALAAGREDLAREALQRKA 94 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555666666666666666554444443333332 333344444444443222223345554444444
Q ss_pred HHHHHHHHHHHHHHHh
Q 011758 281 ETMSEIAALQKQLENA 296 (478)
Q Consensus 281 ~~~~ei~~Lq~el~~~ 296 (478)
.....+..++..+...
T Consensus 95 ~~e~~~~~l~~~~~~~ 110 (221)
T PF04012_consen 95 DLEEQAERLEQQLDQA 110 (221)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4554455555544433
No 139
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=73.78 E-value=64 Score=28.55 Aligned_cols=96 Identities=21% Similarity=0.206 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 011758 333 ESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEAKIRGASEEMISSLHQLSLETENARQEAEEM 412 (478)
Q Consensus 333 ~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eeka~~~~~~L~~~Lqq~s~Eae~Ak~~a~~~ 412 (478)
+.|.+.|.+...++..++..-......-..+..||-++..+.+.+... ...+..+..+......+...+
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~-----------~~~~~~L~~el~~l~~ry~t~ 87 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRAL-----------KKEVEELEQELEELQQRYQTL 87 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333333334444455555554444444322 122223333333333344443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 413 KNKAMELKEEAGATKIALEEAEKKLRA 439 (478)
Q Consensus 413 ~~el~~~keE~E~akaei~~~E~rL~a 439 (478)
-.=+-+..++++.+++.+..+..-+..
T Consensus 88 LellGEK~E~veEL~~Dv~DlK~myr~ 114 (120)
T PF12325_consen 88 LELLGEKSEEVEELRADVQDLKEMYRE 114 (120)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 333445556666666666665555444
No 140
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=73.66 E-value=97 Score=30.55 Aligned_cols=69 Identities=17% Similarity=0.198 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHHHHhhhHHHHHHHHHH
Q 011758 329 RNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEAKIRGASEEMISSLHQ 397 (478)
Q Consensus 329 ~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eeka~~~~~~L~~~Lqq 397 (478)
......|..++..++.++..+..........+.+++.++..+...++.+..........|..|...|++
T Consensus 48 ~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 48 DDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444555566778888888888888888877666666666666666655
No 141
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=73.25 E-value=1.9e+02 Score=33.81 Aligned_cols=29 Identities=28% Similarity=0.234 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 86 TKAQAFVELEKAKRTVEDLSHKLKVVIES 114 (478)
Q Consensus 86 ~k~~a~~EL~~ak~~~eeL~~kLe~a~~e 114 (478)
.+...-....++++.+.-++.++...+-+
T Consensus 345 ~~~~l~~~~~ear~~~~q~~~ql~~le~~ 373 (980)
T KOG0980|consen 345 LKAQLENLKEEARRRIEQYENQLLALEGE 373 (980)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555667777777777666666533
No 142
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=73.13 E-value=1.7e+02 Score=33.03 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 415 KAMELKEEAGATKIALEEAEKKLR 438 (478)
Q Consensus 415 el~~~keE~E~akaei~~~E~rL~ 438 (478)
.+-..-+++-....+|.+++.++.
T Consensus 565 ~Li~~v~~tG~~~rEirdLe~qI~ 588 (594)
T PF05667_consen 565 QLIETVEETGTISREIRDLEEQID 588 (594)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH
Confidence 333444455555555555555543
No 143
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=72.75 E-value=89 Score=29.72 Aligned_cols=54 Identities=24% Similarity=0.346 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 011758 277 TQLTETMSEIAALQKQLENAKASDLDSVRIVTSELDDAKGSLQKVAEEESSLRN 330 (478)
Q Consensus 277 ~kL~~~~~ei~~Lq~el~~~~~~~~~~v~~~~~ELee~k~~L~~a~~E~~~l~~ 330 (478)
.+|.+...++..|+.++..+...|-..+...+.++..++..+..+++=+..|..
T Consensus 110 ~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~ 163 (188)
T PF03962_consen 110 EELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAANRWTDNIFSLKS 163 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 366666667777778887777777777777777777777666666666655543
No 144
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=72.74 E-value=21 Score=27.77 Aligned_cols=45 Identities=24% Similarity=0.313 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhH
Q 011758 334 SLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACV 378 (478)
Q Consensus 334 sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~ 378 (478)
++..||.+++...-.+..+...+......|..++..++.+++.++
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 577888888888888888888888888999999999888887765
No 145
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=72.13 E-value=44 Score=26.92 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 011758 274 NLETQLTETMSEIAALQKQLENAK 297 (478)
Q Consensus 274 ~LE~kL~~~~~ei~~Lq~el~~~~ 297 (478)
+|+..|.+.-..|..|.++.+.+.
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLS 25 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLS 25 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHH
Confidence 456677778888888888877664
No 146
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=72.10 E-value=22 Score=36.95 Aligned_cols=78 Identities=19% Similarity=0.224 Sum_probs=62.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 011758 147 RNQDLETEREKYTSVFSELAAAKQELRKIHQDCNSTLEAKVTAFNLAAAAENSAKANMERVSELSKEISTVQESIGQV 224 (478)
Q Consensus 147 ~k~eLe~~~~q~~~~~~eL~s~k~EL~kl~~el~~~~e~k~~A~~~aeea~~~~~~~~~~ve~L~~El~~~Ke~l~~~ 224 (478)
...+|..++.++...-.+|..+...|..++.+|+.....+......+......+.-..+-+..|..|..+|.+.+...
T Consensus 226 a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l 303 (344)
T PF12777_consen 226 AEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEEL 303 (344)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHH
Confidence 345577777788888888888888999999999888888888888888888888888888888888888777776554
No 147
>PRK10884 SH3 domain-containing protein; Provisional
Probab=72.01 E-value=39 Score=32.73 Aligned_cols=59 Identities=15% Similarity=0.246 Sum_probs=35.4
Q ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 53 PHSAERVLAKETQLHLAQRELNKLKDQLKNAEDTKAQAFVELEKAKRTVEDLSHKLKVVIES 114 (478)
Q Consensus 53 ~~~~e~~~~~e~ql~~~qeel~k~k~ql~~aE~~k~~a~~EL~~ak~~~eeL~~kLe~a~~e 114 (478)
|....++..++.++..++.+|.....+.. ..+....+.+......+.+|..+...+..+
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~ 147 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLKEENQKLKNQ 147 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777778888888877777665543 334445555555555555555555555433
No 148
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=71.93 E-value=1.1e+02 Score=30.61 Aligned_cols=44 Identities=20% Similarity=0.334 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
Q 011758 304 VRIVTSELDDAKGSLQKVAEEESSLRN-----------LVESLKVELENVKKEHS 347 (478)
Q Consensus 304 v~~~~~ELee~k~~L~~a~~E~~~l~~-----------~v~sLr~ELe~~k~el~ 347 (478)
+..+..+++.++..|.++..|++-|.. .+..|...|++++....
T Consensus 83 l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qq 137 (258)
T PF15397_consen 83 LSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQ 137 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555433 45556666666655544
No 149
>PRK10884 SH3 domain-containing protein; Provisional
Probab=71.58 E-value=83 Score=30.46 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 412 MKNKAMELKEEAGATKIALEEAEKKLRAA 440 (478)
Q Consensus 412 ~~~el~~~keE~E~akaei~~~E~rL~a~ 440 (478)
++.+.+.++++...++.++..++..+...
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333
No 150
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=71.54 E-value=1.7e+02 Score=32.51 Aligned_cols=44 Identities=20% Similarity=0.402 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011758 248 SYKATLEESAKKLLALRNQFDPQLTQNLETQLTETMSEIAALQKQLENA 296 (478)
Q Consensus 248 ~~~~~lee~~~~l~~L~~e~~~el~k~LE~kL~~~~~ei~~Lq~el~~~ 296 (478)
.....+-+.+.++..|...++ ++.....+....+..++.++..+
T Consensus 429 ei~~~~~~~~~~~~tLq~~~~-----~~~~~i~E~~~~l~~~~~el~~~ 472 (581)
T KOG0995|consen 429 EISEELHEAENELETLQEHFS-----NKASTIEEKIQILGEIELELKKA 472 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666666666655 33333334444444444444433
No 151
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=71.30 E-value=2.3e+02 Score=33.81 Aligned_cols=70 Identities=16% Similarity=0.140 Sum_probs=49.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 145 GARNQDLETEREKYTSVFSELAAAKQELRKIHQDCNSTLEAKVTAFNLAAAAENSAKANMERVSELSKEI 214 (478)
Q Consensus 145 ~a~k~eLe~~~~q~~~~~~eL~s~k~EL~kl~~el~~~~e~k~~A~~~aeea~~~~~~~~~~ve~L~~El 214 (478)
.-...+|-.++.....+-+++..++-.++.++.++...--++..+-..+..-...+......|+.|...+
T Consensus 395 ~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l 464 (1174)
T KOG0933|consen 395 KTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRL 464 (1174)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577889999999999999999999999999999976655555555554444444444444444444433
No 152
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=70.95 E-value=57 Score=26.74 Aligned_cols=51 Identities=16% Similarity=0.309 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 303 SVRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKE 353 (478)
Q Consensus 303 ~v~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e 353 (478)
++.-+..|+++.+..=.....|+..++..-+.|..+-.+++.++..-+.+.
T Consensus 19 tI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerL 69 (79)
T PRK15422 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555666666666666677777777777766555543
No 153
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=70.89 E-value=1.8e+02 Score=32.37 Aligned_cols=49 Identities=10% Similarity=0.110 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011758 89 QAFVELEKAKRTVEDLSHKLKVVIESKESAIKVTEAAKIQAKQIEESNC 137 (478)
Q Consensus 89 ~a~~EL~~ak~~~eeL~~kLe~a~~e~~~a~e~~e~~k~r~~Ele~~~~ 137 (478)
..+.++..+......+...|.+.+.......+..+..++++.+++...-
T Consensus 158 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l 206 (563)
T TIGR00634 158 EKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADL 206 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCc
Confidence 4667777777778888888888888888888889999999999988643
No 154
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=69.56 E-value=1.4e+02 Score=30.83 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 011758 248 SYKATLEESAKKLLALRNQ 266 (478)
Q Consensus 248 ~~~~~lee~~~~l~~L~~e 266 (478)
.|+...++.+.+-..|+..
T Consensus 27 qyKlMAEqLqer~q~LKkk 45 (319)
T PF09789_consen 27 QYKLMAEQLQERYQALKKK 45 (319)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555543
No 155
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=69.56 E-value=53 Score=31.53 Aligned_cols=35 Identities=26% Similarity=0.436 Sum_probs=31.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 316 GSLQKVAEEESSLRNLVESLKVELENVKKEHSELK 350 (478)
Q Consensus 316 ~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~ 350 (478)
.+|..+++++..+...|..|.+-|..-+.+|..|+
T Consensus 160 ~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 160 KNLKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57888999999999999999999999999988875
No 156
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=69.46 E-value=1.4e+02 Score=30.59 Aligned_cols=222 Identities=16% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Q 011758 210 LSKEISTVQESIGQVKLATMQAQQEQAKVFAEKDLQRQSYKATLEESAKKLLALRNQFDPQLTQNLETQLTETMSEIAAL 289 (478)
Q Consensus 210 L~~El~~~Ke~l~~~~~a~~~Aee~~~~~~~~~~~~~~~~~~~lee~~~~l~~L~~e~~~el~k~LE~kL~~~~~ei~~L 289 (478)
|..+|..++-.++.++...-+-+.....=..--..--...+..+.-.+..+..--.+|. ..|....++...|
T Consensus 4 Lq~eia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~--------~QLn~L~aENt~L 75 (305)
T PF14915_consen 4 LQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYN--------GQLNVLKAENTML 75 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh--------hhHHHHHHHHHHH
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----hhHHH
Q 011758 290 QKQLENAKASDLDSVRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIA----GNLHV 365 (478)
Q Consensus 290 q~el~~~~~~~~~~v~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v----~~L~~ 365 (478)
--+++.-+ ..-.++..|++.+..+|..+..+...-..+-..|..-+...+.+...++.+-+---+.. ..|..
T Consensus 76 ~SkLe~EK----q~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQ 151 (305)
T PF14915_consen 76 NSKLEKEK----QNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQ 151 (305)
T ss_pred hHHHHHhH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHH
Q ss_pred HHHHhHHHHHHhHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 366 LLQKTKSELEACVVEEAKIRGASEEMISSLHQLSLETENARQEAEEMKNKAMELKEEAGATKIALEEAEKKLRAALEE 443 (478)
Q Consensus 366 EL~k~k~ELe~~~~~Eeka~~~~~~L~~~Lqq~s~Eae~Ak~~a~~~~~el~~~keE~E~akaei~~~E~rL~a~~kE 443 (478)
.|.++.+....+..+--..+...-.=+..|..+..+...+.-....+..-.+.-......--..-+-++-||..+.-|
T Consensus 152 qLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsE 229 (305)
T PF14915_consen 152 QLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSE 229 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
No 157
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=69.44 E-value=96 Score=31.93 Aligned_cols=56 Identities=29% Similarity=0.237 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 407 QEAEEMKNKAMELKEEAGATKIALEEAEKKLRAALEEAEEAKGAETRALDRLRRCL 462 (478)
Q Consensus 407 ~~a~~~~~el~~~keE~E~akaei~~~E~rL~a~~kE~eaakasE~~Al~~l~~l~ 462 (478)
.+...++.+...+..+-++...........+.....+....++.=..+...|.-|.
T Consensus 78 ~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 78 QELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444555555555555555555555555555555555555555554
No 158
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=68.12 E-value=1.2e+02 Score=29.30 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011758 161 VFSELAAAKQELRKIHQDCNSTLEAKVT 188 (478)
Q Consensus 161 ~~~eL~s~k~EL~kl~~el~~~~e~k~~ 188 (478)
.+.-.+.+.+-+...+.+|.++++.-..
T Consensus 26 lvdrVe~Ardsq~eaqeQF~sALe~f~s 53 (201)
T PF11172_consen 26 LVDRVEDARDSQQEAQEQFKSALEQFKS 53 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777777777777776665543
No 159
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=68.00 E-value=1.2e+02 Score=29.15 Aligned_cols=46 Identities=24% Similarity=0.373 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 011758 279 LTETMSEIAALQKQLENAKASDLDSVRIVTSELDDAKGSLQKVAEEESSL 328 (478)
Q Consensus 279 L~~~~~ei~~Lq~el~~~~~~~~~~v~~~~~ELee~k~~L~~a~~E~~~l 328 (478)
+..-..+|-+|+..+..+. +........+.+....|.+..++...|
T Consensus 63 l~~h~eEvr~Lr~~LR~~q----~~~r~~~~klk~~~~el~k~~~~l~~L 108 (194)
T PF15619_consen 63 LQRHNEEVRVLRERLRKSQ----EQERELERKLKDKDEELLKTKDELKHL 108 (194)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555554 344445555555555555444444433
No 160
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=66.92 E-value=2.8e+02 Score=33.09 Aligned_cols=54 Identities=30% Similarity=0.466 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011758 243 DLQRQSYKATLEESAKKLLALRNQFDP--QLTQNLETQLTETMSEIAALQKQLENA 296 (478)
Q Consensus 243 ~~~~~~~~~~lee~~~~l~~L~~e~~~--el~k~LE~kL~~~~~ei~~Lq~el~~~ 296 (478)
+.....|....+-++..+..|..++-| .....|+++..++.+.+..++.++...
T Consensus 247 ~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~ 302 (1072)
T KOG0979|consen 247 DREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEA 302 (1072)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHH
Confidence 333445555555566666666655432 233455555555555555555554433
No 161
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=66.72 E-value=1.1e+02 Score=28.43 Aligned_cols=75 Identities=17% Similarity=0.224 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHh
Q 011758 303 SVRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEAC 377 (478)
Q Consensus 303 ~v~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~ 377 (478)
.+..+..+-.++...|....+....|+..=+.|.-.|.+++..+.....--+..++-..-|...|..+-..|+.+
T Consensus 78 dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~ 152 (159)
T PF05384_consen 78 DIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDA 152 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344455555555555665555555555555555555555555555444444333333444444444444443333
No 162
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=66.52 E-value=67 Score=25.83 Aligned_cols=27 Identities=33% Similarity=0.453 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011758 271 LTQNLETQLTETMSEIAALQKQLENAK 297 (478)
Q Consensus 271 l~k~LE~kL~~~~~ei~~Lq~el~~~~ 297 (478)
+...||.+...+-.-|..|+.++..++
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLk 31 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELK 31 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666555543
No 163
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=66.37 E-value=1.3e+02 Score=29.11 Aligned_cols=114 Identities=10% Similarity=0.153 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH
Q 011758 190 FNLAAAAENSAKANMERVSELSKEISTVQESIGQVKLATMQAQQEQAKVFAEKDLQRQSYKATLEESAKKLLALRNQFDP 269 (478)
Q Consensus 190 ~~~aeea~~~~~~~~~~ve~L~~El~~~Ke~l~~~~~a~~~Aee~~~~~~~~~~~~~~~~~~~lee~~~~l~~L~~e~~~ 269 (478)
+.++++-...+. .-+.++...|..++..+..+-+.....+.+.. .+......|..+...-=...+.
T Consensus 19 ~dk~EDP~~~l~---q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~-----------~~~~~~~~~~~~A~~Al~~G~E 84 (219)
T TIGR02977 19 LDKAEDPEKMIR---LIIQEMEDTLVEVRTTSARTIADKKELERRVS-----------RLEAQVADWQEKAELALSKGRE 84 (219)
T ss_pred HHhccCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHCCCH
Confidence 344444433333 33444444666666666555444444444332 3444444555554433333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHH
Q 011758 270 QLTQNLETQLTETMSEIAALQKQLENAKASDLDSVRIVTSELDDAKGSLQKV 321 (478)
Q Consensus 270 el~k~LE~kL~~~~~ei~~Lq~el~~~~~~~~~~v~~~~~ELee~k~~L~~a 321 (478)
.+++..-.+-......+..|+.++.... ..|..++..|..++..+..+
T Consensus 85 dLAr~Al~~k~~~~~~~~~l~~~~~~~~----~~v~~l~~~l~~L~~ki~~~ 132 (219)
T TIGR02977 85 DLARAALIEKQKAQELAEALERELAAVE----ETLAKLQEDIAKLQAKLAEA 132 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 4444333333333444444444444443 23333444444444333333
No 164
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=66.18 E-value=1.5e+02 Score=29.77 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 011758 247 QSYKATLEESAKKLLALRNQFDPQLTQNLETQLTETMSEIAALQKQLENAKA 298 (478)
Q Consensus 247 ~~~~~~lee~~~~l~~L~~e~~~el~k~LE~kL~~~~~ei~~Lq~el~~~~~ 298 (478)
...+.++++.+.++.....++. .+.-+.+.+--..+-.|..|..++..++.
T Consensus 84 ~~Lq~ql~~l~akI~k~~~el~-~L~TYkD~EYPvK~vqIa~L~rqlq~lk~ 134 (258)
T PF15397_consen 84 SKLQQQLEQLDAKIQKTQEELN-FLSTYKDHEYPVKAVQIANLVRQLQQLKD 134 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4555667777777777777765 34445554444445566777777766654
No 165
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=65.88 E-value=1.2e+02 Score=28.41 Aligned_cols=10 Identities=20% Similarity=0.581 Sum_probs=3.8
Q ss_pred HHHhHHHHHH
Q 011758 367 LQKTKSELEA 376 (478)
Q Consensus 367 L~k~k~ELe~ 376 (478)
+..++.+++.
T Consensus 140 i~~lr~~iE~ 149 (177)
T PF07798_consen 140 IANLRTEIES 149 (177)
T ss_pred HHHHHHHHHH
Confidence 3333334333
No 166
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=64.32 E-value=1.8e+02 Score=30.02 Aligned_cols=96 Identities=15% Similarity=0.091 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHHHHhh--hHHHHHHHHHHhHHHHHHHH
Q 011758 329 RNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEAKIRG--ASEEMISSLHQLSLETENAR 406 (478)
Q Consensus 329 ~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eeka~~--~~~~L~~~Lqq~s~Eae~Ak 406 (478)
...|..|..||-.....|..++---+...-+|.-|...++.++.+|..-+.+..-..+ ...+.....|.+.-|..-|.
T Consensus 222 ~~Lvs~Le~eL~~iqaqL~tvks~m~~~nPqi~~LkarieSlrkql~qe~q~isag~~~~sl~~qaAefq~l~lE~~fAe 301 (372)
T COG3524 222 MSLVSKLEDELIVIQAQLDTVKSVMNPENPQIPGLKARIESLRKQLLQEKQAISAGGSSQSLSNQAAEFQRLYLENTFAE 301 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHH
Confidence 4467778888888888888777666566667777777777777776554433221111 44566777777777766666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011758 407 QEAEEMKNKAMELKEEAG 424 (478)
Q Consensus 407 ~~a~~~~~el~~~keE~E 424 (478)
+....+-.-+..+|-|+.
T Consensus 302 kay~AAl~SlEsArieAd 319 (372)
T COG3524 302 KAYAAALTSLESARIEAD 319 (372)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 666655555555555443
No 167
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=63.08 E-value=1.6e+02 Score=33.16 Aligned_cols=46 Identities=22% Similarity=0.448 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 306 IVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKE 351 (478)
Q Consensus 306 ~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~ 351 (478)
.+.+++......++....|...|...++.++.+++.++.++.+++.
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r 464 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRR 464 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555555555555555555444
No 168
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.31 E-value=3.1e+02 Score=32.02 Aligned_cols=62 Identities=11% Similarity=0.032 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 69 AQRELNKLKDQLKNAEDTKAQAFVELEKAKRTVEDLSHKLKVVIESKESAIKVTEAAKIQAK 130 (478)
Q Consensus 69 ~qeel~k~k~ql~~aE~~k~~a~~EL~~ak~~~eeL~~kLe~a~~e~~~a~e~~e~~k~r~~ 130 (478)
.+.-.-+||.-+...+......-+...+.+-..++|..++..-..+..+......+-+.++.
T Consensus 655 l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 655 LDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334456666666666666666666666667777777777766666666666666666554
No 169
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=62.02 E-value=1.7e+02 Score=28.93 Aligned_cols=29 Identities=14% Similarity=0.185 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 422 EAGATKIALEEAEKKLRAALEEAEEAKGA 450 (478)
Q Consensus 422 E~E~akaei~~~E~rL~a~~kE~eaakas 450 (478)
........+.....++..+...+...+..
T Consensus 120 ~~~~~~~~~~~~~~~l~~l~~~l~~~r~~ 148 (302)
T PF10186_consen 120 QLEELQNELEERKQRLSQLQSQLARRRRQ 148 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 170
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=61.88 E-value=1.2e+02 Score=27.22 Aligned_cols=41 Identities=22% Similarity=0.387 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 63 ETQLHLAQRELNKLKDQLKNAEDTKAQAFVELEKAKRTVED 103 (478)
Q Consensus 63 e~ql~~~qeel~k~k~ql~~aE~~k~~a~~EL~~ak~~~ee 103 (478)
+.+|+.+++++..++.++..++..-....++|..+-+.+.+
T Consensus 14 ~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~e 54 (136)
T PF11570_consen 14 RAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKE 54 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 46899999999999999999998877777777777766665
No 171
>PRK11281 hypothetical protein; Provisional
Probab=61.80 E-value=3.7e+02 Score=32.75 Aligned_cols=29 Identities=10% Similarity=0.146 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 83 AEDTKAQAFVELEKAKRTVEDLSHKLKVV 111 (478)
Q Consensus 83 aE~~k~~a~~EL~~ak~~~eeL~~kLe~a 111 (478)
.+..+..+.+.|+.|....++.....+++
T Consensus 54 ~~~~~k~~~~~l~~tL~~L~qi~~~~~~~ 82 (1113)
T PRK11281 54 LEAEDKLVQQDLEQTLALLDKIDRQKEET 82 (1113)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556677777766666555444444
No 172
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=61.11 E-value=83 Score=25.06 Aligned_cols=37 Identities=32% Similarity=0.416 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 305 RIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELEN 341 (478)
Q Consensus 305 ~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~ 341 (478)
..+..|=+.+-..|..+..+...|+..++.|+.+|+.
T Consensus 29 k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 29 KRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555566666666666666666666666544
No 173
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=60.48 E-value=2e+02 Score=29.25 Aligned_cols=82 Identities=20% Similarity=0.220 Sum_probs=53.8
Q ss_pred HHHhhHHHHHHHhHHHHH--HhHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 358 SIAGNLHVLLQKTKSELE--ACVVEEAKIRGASEEMISSLHQLSLETENARQEAEEMKNKAMELKEEAGATKIALEEAEK 435 (478)
Q Consensus 358 ~~v~~L~~EL~k~k~ELe--~~~~~Eeka~~~~~~L~~~Lqq~s~Eae~Ak~~a~~~~~el~~~keE~E~akaei~~~E~ 435 (478)
..|..|+..|-+++.+.= +|.- ..-..+|.++..|+...|.-.+-|+..|...-.=+.+-+..|+--+.
T Consensus 89 tEI~eLksQL~RMrEDWIEEECHR---------VEAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~ 159 (305)
T PF15290_consen 89 TEIDELKSQLARMREDWIEEECHR---------VEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNK 159 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHh
Confidence 446666666666665531 1211 12256677777777777777777777777777777777777777778
Q ss_pred HHHHHHHHHHHHH
Q 011758 436 KLRAALEEAEEAK 448 (478)
Q Consensus 436 rL~a~~kE~eaak 448 (478)
+|+.++.-+|-|-
T Consensus 160 KLEsLLqsMElAq 172 (305)
T PF15290_consen 160 KLESLLQSMELAQ 172 (305)
T ss_pred HHHHHHHHHHHHH
Confidence 8888887777653
No 174
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=59.97 E-value=2.8e+02 Score=30.76 Aligned_cols=373 Identities=16% Similarity=0.164 Sum_probs=173.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHh
Q 011758 59 VLAKETQLHLAQRELNKLKDQLKNAEDTKAQAFVELEKAKRTVEDLSHKLKVVIE---S-KESAIKVTEAAKIQAKQIEE 134 (478)
Q Consensus 59 ~~~~e~ql~~~qeel~k~k~ql~~aE~~k~~a~~EL~~ak~~~eeL~~kLe~a~~---e-~~~a~e~~e~~k~r~~Ele~ 134 (478)
...++.+|..+..++..|-..-.... ..+|-.=|..+.+...-|.+-+++.=. + +.-.-..+.--+.-+..|..
T Consensus 166 ~~~lEk~Le~i~~~l~qf~~lt~~Gd--~ieA~evl~~~ee~~~~L~~~~e~IP~L~~e~~~~lP~ql~~Lk~Gyr~m~~ 243 (570)
T COG4477 166 APELEKKLENIEEELSQFVELTSSGD--YIEAREVLEEAEEHMIALRSIMERIPSLLAELQTELPGQLQDLKAGYRDMKE 243 (570)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 34556667777777766654422211 123333344444444444444443310 0 00001111222334667766
Q ss_pred hccCCCCCCchhhhhhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 011758 135 SNCSNPSGSDGARNQDLETEREKYTS-----VFSELAAAKQELRKIHQDCNSTLEAKVTA---FNLAAAAENSAKANMER 206 (478)
Q Consensus 135 ~~~~~~~~~~~a~k~eLe~~~~q~~~-----~~~eL~s~k~EL~kl~~el~~~~e~k~~A---~~~aeea~~~~~~~~~~ 206 (478)
.+...+. .....+++..+.+... .--+|+-+..+|.-++..++++.+--..- -+-+..-...+ -..
T Consensus 244 ~gY~l~~---~~id~~~~~L~~~l~~~~~~l~~Leld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l---~~~ 317 (570)
T COG4477 244 EGYHLEH---VNIDSRLERLKEQLVENSELLTQLELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPIL---PDY 317 (570)
T ss_pred ccCCccc---ccHHHHHHHHHHHHHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch---HHH
Confidence 6565543 3466677776666553 23466788888888888888876432221 11122222222 222
Q ss_pred HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Q 011758 207 VSELSKEISTVQESIGQVKLATMQAQQEQAKVFAEKDLQRQSYKATLEESAKKLLALRNQFDPQLTQNLETQLTETMSEI 286 (478)
Q Consensus 207 ve~L~~El~~~Ke~l~~~~~a~~~Aee~~~~~~~~~~~~~~~~~~~lee~~~~l~~L~~e~~~el~k~LE~kL~~~~~ei 286 (478)
+..++..-..+++.++.++..-.=++.... .....+++|+.|.+.++ ++...++..-...|
T Consensus 318 l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~---------------~vr~~e~eL~el~~~~~-~i~~~~~~~~~~yS--- 378 (570)
T COG4477 318 LEKAKENNEHLKEEIERVKESYRLAETELG---------------SVRKFEKELKELESVLD-EILENIEAQEVAYS--- 378 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccChhHHH---------------HHHHHHHHHHHHHHHHH-HHHHHhhcccccHH---
Confidence 222222223334444444333333333322 12233445555555554 23333333222222
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHhhhH
Q 011758 287 AALQKQLENAKASDLDSVRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHS---------ELKEKEAETE 357 (478)
Q Consensus 287 ~~Lq~el~~~~~~~~~~v~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~---------~l~~~e~~a~ 357 (478)
.|+..++... +.+..+..+-..+...|.....+...-+.....+++.|...+.-+. .+...-..++
T Consensus 379 -~lq~~l~~~~----~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~mek~nLPGlPe~~l~l~~~~~ 453 (570)
T COG4477 379 -ELQDNLEEIE----KALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYMEKSNLPGLPETFLSLFFTAG 453 (570)
T ss_pred -HHHHHHHHHH----HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhhh
Confidence 1222222221 1222333333333333333333333333344444444444443332 3444556778
Q ss_pred HHHhhHHHHHHHhHHHHHHhHHHHHHHhhhHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 358 SIAGNLHVLLQKTKSELEACVVEEAKIRGASEEMISSLHQLSLETENA---RQEAEEMKNKAMELKEEAGATKIALEEAE 434 (478)
Q Consensus 358 ~~v~~L~~EL~k~k~ELe~~~~~Eeka~~~~~~L~~~Lqq~s~Eae~A---k~~a~~~~~el~~~keE~E~akaei~~~E 434 (478)
..++.|..+|....-.++.+..--..+...|..+.....++..-+.-| =+-++..+..-..+.+...++-.-. ...
T Consensus 454 ~~i~~l~~eLse~pinm~~v~~~v~~a~~~m~~l~~~t~e~ve~a~LaE~lIQY~NRYRs~~~~v~~~l~eAe~lF-~~~ 532 (570)
T COG4477 454 HEIQDLMKELSEVPINMEAVSALVDIATEDMNTLEDETEEVVENAVLAEQLIQYGNRYRSRNAEVAKSLNEAERLF-ENA 532 (570)
T ss_pred hHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHh
Confidence 889999999999999999888877777777776666655555443332 2233333332223332222222111 123
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Q 011758 435 KKLRAALEEAEEA-KGAETRALDRLRRCLRE 464 (478)
Q Consensus 435 ~rL~a~~kE~eaa-kasE~~Al~~l~~l~e~ 464 (478)
..+..+..++..| --.|-=|+.++....+.
T Consensus 533 ~dY~~s~eia~qaLE~vEpGv~~ki~~~y~k 563 (570)
T COG4477 533 FDYDASFEIASQALEKVEPGVTKKIEESYEK 563 (570)
T ss_pred cchhHHHHHHHHHHhhhCCcHHHHHHHHHhc
Confidence 3455555555544 44455556666555444
No 175
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.64 E-value=2e+02 Score=29.01 Aligned_cols=11 Identities=36% Similarity=0.570 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 011758 339 LENVKKEHSEL 349 (478)
Q Consensus 339 Le~~k~el~~l 349 (478)
|++.+.....|
T Consensus 150 le~qk~dk~~L 160 (265)
T COG3883 150 LEQQKEDKKSL 160 (265)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 176
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=59.62 E-value=21 Score=36.88 Aligned_cols=123 Identities=15% Similarity=0.225 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHHHHhhhHHHHHHHHHH
Q 011758 318 LQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEAKIRGASEEMISSLHQ 397 (478)
Q Consensus 318 L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eeka~~~~~~L~~~Lqq 397 (478)
|..+.+....|...+.+|..-+..+...+..|.-........+.++..+|+.+...+..++..-......+.+|...+..
T Consensus 30 Ls~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~ 109 (326)
T PF04582_consen 30 LSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSD 109 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhh
Confidence 33344444444445555555555544444444444444555555555555555555555544444444555555555555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 398 LSLETENARQEAEEMKNKAMELKEEAGATKIALEEAEKKLRAA 440 (478)
Q Consensus 398 ~s~Eae~Ak~~a~~~~~el~~~keE~E~akaei~~~E~rL~a~ 440 (478)
....+-........+.-.+-+++...-..-..|..++.|+.++
T Consensus 110 h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~L 152 (326)
T PF04582_consen 110 HSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKAL 152 (326)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHH
Confidence 5555555556666666666666666666666777777776543
No 177
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=59.18 E-value=2.2e+02 Score=29.31 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 412 MKNKAMELKEEAGATKIALEEAEKKLRAA 440 (478)
Q Consensus 412 ~~~el~~~keE~E~akaei~~~E~rL~a~ 440 (478)
++.++..+...++.....+..+...+..+
T Consensus 235 l~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 235 LQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 178
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=59.12 E-value=2.9e+02 Score=30.68 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011758 155 REKYTSVFSELAAAKQELRKIHQDCNST 182 (478)
Q Consensus 155 ~~q~~~~~~eL~s~k~EL~kl~~el~~~ 182 (478)
+..|..+..++...+.+|.+++......
T Consensus 160 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~ 187 (563)
T TIGR00634 160 VKAYRELYQAWLKARQQLKDRQQKEQEL 187 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3456666666666666666655554433
No 179
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=57.82 E-value=2e+02 Score=28.38 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=21.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 392 ISSLHQLSLETENARQEAEEMKNKAMELKEEAGATKIA 429 (478)
Q Consensus 392 ~~~Lqq~s~Eae~Ak~~a~~~~~el~~~keE~E~akae 429 (478)
-..+.++.++-+..+..+..+..++..++.++...+.+
T Consensus 66 E~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 66 ENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555666666666666555
No 180
>PRK10869 recombination and repair protein; Provisional
Probab=57.44 E-value=3.1e+02 Score=30.51 Aligned_cols=49 Identities=12% Similarity=0.072 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011758 89 QAFVELEKAKRTVEDLSHKLKVVIESKESAIKVTEAAKIQAKQIEESNC 137 (478)
Q Consensus 89 ~a~~EL~~ak~~~eeL~~kLe~a~~e~~~a~e~~e~~k~r~~Ele~~~~ 137 (478)
..+.++..+=.....+..+|+..+.......+..+..++++.|++...-
T Consensus 154 ~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l 202 (553)
T PRK10869 154 SLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFAP 202 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5566666666677777788888877777788888999999999988643
No 181
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=56.99 E-value=80 Score=30.83 Aligned_cols=47 Identities=26% Similarity=0.403 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 307 VTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKE 353 (478)
Q Consensus 307 ~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e 353 (478)
++.+|+.-...|+.+......|....+.+..|-+++.++.+.|+++-
T Consensus 163 L~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 163 LETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 34444455666777777777777777788888887777777776643
No 182
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=56.78 E-value=93 Score=24.26 Aligned_cols=45 Identities=24% Similarity=0.367 Sum_probs=21.6
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011758 288 ALQKQLENAKASDLDSVRIVTSELDDAKGSLQKVAEEESSLRNLVESLK 336 (478)
Q Consensus 288 ~Lq~el~~~~~~~~~~v~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr 336 (478)
.++++|...+ .....+...|.++.........++..|+..++-++
T Consensus 15 ~~~eEL~kvk----~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 15 AIQEELTKVK----SANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3555555554 23344555555555555444444444444444433
No 183
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=56.65 E-value=2.2e+02 Score=28.60 Aligned_cols=221 Identities=20% Similarity=0.259 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Q 011758 158 YTSVFSELAAAKQELRKI--HQDCNSTLEAKVTAFNLAAAAENSAKANMERVSELSKEISTVQESIGQVKLATMQAQQEQ 235 (478)
Q Consensus 158 ~~~~~~eL~s~k~EL~kl--~~el~~~~e~k~~A~~~aeea~~~~~~~~~~ve~L~~El~~~Ke~l~~~~~a~~~Aee~~ 235 (478)
+..---.+.+++.+|+.- ..+|.+.+-+ ++. ..-.-|...|.-+|++..+++..+..|....
T Consensus 68 ~~seq~~~~~a~~elq~~ks~~Q~e~~v~a--------------~e~--~~~rll~d~i~nLk~se~~lkqQ~~~a~RrE 131 (330)
T KOG2991|consen 68 RLSEQDFKVMARDELQLRKSWKQYEAYVQA--------------LEG--KYTRLLSDDITNLKESEEKLKQQQQEAARRE 131 (330)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hcC--cccchhHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 334445667788888765 3334332211 111 3344567788888888888887777776543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Q 011758 236 AKVFAEKDLQRQSYKATLEESAKKLLALRNQFDPQLTQNLETQLTETMSEIAALQKQLENAKASDLDSVRIVTSELDDAK 315 (478)
Q Consensus 236 ~~~~~~~~~~~~~~~~~lee~~~~l~~L~~e~~~el~k~LE~kL~~~~~ei~~Lq~el~~~~~~~~~~v~~~~~ELee~k 315 (478)
. |+.-+-+ .-..++.+....+..|+.+.-|..+. |-.-|.+ ..+. -.+.+++++|++.+
T Consensus 132 ~-ilv~rlA---~kEQEmqe~~sqi~~lK~qq~Ps~~q-lR~~llD-----PAin-----------l~F~rlK~ele~tk 190 (330)
T KOG2991|consen 132 N-ILVMRLA---TKEQEMQECTSQIQYLKQQQQPSVAQ-LRSTLLD-----PAIN-----------LFFLRLKGELEQTK 190 (330)
T ss_pred H-HHHHHHH---HHHHHHHHHHHHHHHHHHhhCcHHHH-HHHHhhC-----hHHH-----------HHHHHHHHHHHHHH
Confidence 2 2211111 22223344444445555554442211 1111100 0011 12456777777777
Q ss_pred HhHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHHH
Q 011758 316 GSLQKVAEEESS------------LRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEAK 383 (478)
Q Consensus 316 ~~L~~a~~E~~~------------l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eek 383 (478)
.+|+.+.+|++. |++.-..|.- ...++- . ..+.-.|..|..+|---++-- ++
T Consensus 191 ~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~q----ENeElG---~--q~s~Gria~Le~eLAmQKs~s-------eE 254 (330)
T KOG2991|consen 191 DKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQ----ENEELG---H--QASEGRIAELEIELAMQKSQS-------EE 254 (330)
T ss_pred HHHHHHHhhhheeeecCCCcchHHHHHHHHHHHH----HHHHHH---h--hhhcccHHHHHHHHHHHHhhH-------HH
Confidence 777777777655 4444333332 222222 2 123445666666655444443 34
Q ss_pred HhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 384 IRGASEEMISSLHQLSLETENARQEAEEMKNKAMELKEEAGATKIALE 431 (478)
Q Consensus 384 a~~~~~~L~~~Lqq~s~Eae~Ak~~a~~~~~el~~~keE~E~akaei~ 431 (478)
.++--++|..-++++..+.+--......++.+|...+.+|+.++....
T Consensus 255 lkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~ 302 (330)
T KOG2991|consen 255 LKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLE 302 (330)
T ss_pred HHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788888888888777666666666666666666666655543
No 184
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=56.56 E-value=2.5e+02 Score=29.13 Aligned_cols=41 Identities=24% Similarity=0.438 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 011758 253 LEESAKKLLALRNQFDPQLTQNLETQLTETMSEIAALQKQLENAKA 298 (478)
Q Consensus 253 lee~~~~l~~L~~e~~~el~k~LE~kL~~~~~ei~~Lq~el~~~~~ 298 (478)
+.++......|..++. +|-.+|.+...+|..|...+...+.
T Consensus 74 L~~sre~Nk~L~~Ev~-----~Lrqkl~E~qGD~KlLR~~la~~r~ 114 (319)
T PF09789_consen 74 LSESREQNKKLKEEVE-----ELRQKLNEAQGDIKLLREKLARQRV 114 (319)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHhchHHHHHHHHHhhhh
Confidence 4555555555555544 4555666666666666666655443
No 185
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=56.17 E-value=1.4e+02 Score=26.01 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHh
Q 011758 329 RNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEAC 377 (478)
Q Consensus 329 ~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~ 377 (478)
...+.+|...|+..|....+|........+.+.+|..+....-..+..+
T Consensus 15 ~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eL 63 (107)
T PF09304_consen 15 QNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAEL 63 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555554333334444444444444443333333
No 186
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=56.16 E-value=2.2e+02 Score=29.29 Aligned_cols=65 Identities=18% Similarity=0.347 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 011758 271 LTQNLETQLTETMSEIAALQKQLENAKASDLDSVRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVEL 339 (478)
Q Consensus 271 l~k~LE~kL~~~~~ei~~Lq~el~~~~~~~~~~v~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~EL 339 (478)
.+..|+++=....-+|..|++.|..+. ..+..+.+++.+-...++..+....+|+..+..|+.+|
T Consensus 99 ~naQLDNek~~l~yqvd~Lkd~lee~e----E~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 99 SNAQLDNEKSALMYQVDLLKDKLEELE----ETLAQLQREYREKIRELERQKRAHDSLREELDELREQL 163 (302)
T ss_pred HHhhhchHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777778888888888776 56777777776555555555444444444444444444
No 187
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=55.78 E-value=57 Score=30.13 Aligned_cols=64 Identities=23% Similarity=0.337 Sum_probs=31.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhH
Q 011758 310 ELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACV 378 (478)
Q Consensus 310 ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~ 378 (478)
++.++...+....++...+...+..|+++|..+...+.. ..+...|..|..++..+...|..++
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~-----~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTN-----EELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445555555555555555444432 1233445555555555555555554
No 188
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=55.49 E-value=4.6e+02 Score=31.92 Aligned_cols=262 Identities=14% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 173 RKIHQDCNSTLEAKVTAFNLAAAAENSAKANMERVSELSKEISTVQESIGQVKLATMQAQQEQAKVFAEKDLQRQSYKAT 252 (478)
Q Consensus 173 ~kl~~el~~~~e~k~~A~~~aeea~~~~~~~~~~ve~L~~El~~~Ke~l~~~~~a~~~Aee~~~~~~~~~~~~~~~~~~~ 252 (478)
..++.+++.+-..+...-+.+-+.-..+-......+........++..+ ..+-..
T Consensus 26 ~~iq~~l~~~~~~~~~~~k~~~~~l~~tl~~l~~~~~~~~~~~~~~~~i-------------------------~~ap~~ 80 (1109)
T PRK10929 26 KQITQELEQAKAAKTPAQAEIVEALQSALNWLEERKGSLERAKQYQQVI-------------------------DNFPKL 80 (1109)
T ss_pred HHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHhHHH
Q ss_pred HHHHHHHHHHHHhcccHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH--------------HHHHHHHHH
Q 011758 253 LEESAKKLLALRNQFDPQL-----TQNLETQLTETMSEIAALQKQLENAKASDLDSV--------------RIVTSELDD 313 (478)
Q Consensus 253 lee~~~~l~~L~~e~~~el-----~k~LE~kL~~~~~ei~~Lq~el~~~~~~~~~~v--------------~~~~~ELee 313 (478)
+.+.++++..+++...+ . ..+||.++..+.+++..+++++.... +.+ ...+..|.+
T Consensus 81 ~~~~~~~l~~~~~~~~~-~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~----~~~~~~~~~l~~~pq~~~~~~~~l~~ 155 (1109)
T PRK10929 81 SAELRQQLNNERDEPRS-VPPNMSTDALEQEILQVSSQLLEKSRQAQQEQ----DRAREISDSLSQLPQQQTEARRQLNE 155 (1109)
T ss_pred HHHHHHHHHhhhccccc-ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHhhchhhHHHHHHHHHH
Q ss_pred HHHhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHH-HHHH
Q 011758 314 AKGSLQKV--------AEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVE-EAKI 384 (478)
Q Consensus 314 ~k~~L~~a--------~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~-Eeka 384 (478)
.+..|... ......+......+..++...+.++....++......+..-+..++.++...+..++.. -.+-
T Consensus 156 i~~~L~~~~~~~~~l~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR 235 (1109)
T PRK10929 156 IERRLQTLGTPNTPLAQAQLTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQR 235 (1109)
T ss_pred HHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011758 385 RGASEEMISSLHQLSLETENARQEAEEMKNKAMELKEEAGATKIALEEAEKKLRAALEEAEEAKGAETRALDRLRRCLRE 464 (478)
Q Consensus 385 ~~~~~~L~~~Lqq~s~Eae~Ak~~a~~~~~el~~~keE~E~akaei~~~E~rL~a~~kE~eaakasE~~Al~~l~~l~e~ 464 (478)
....+......+....+....-.-....-...+.+..+..+.-..++.+-.+...+..-.+-.+-+.+-.-+++..|..+
T Consensus 236 ~~~se~~~~~~~~~~~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~S 315 (1109)
T PRK10929 236 QREAERALESTELLAEQSGDLPKSIVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGVS 315 (1109)
T ss_pred HHHHHHHHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
No 189
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=55.31 E-value=3.5e+02 Score=30.49 Aligned_cols=32 Identities=25% Similarity=0.269 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 410 EEMKNKAMELKEEAGATKIALEEAEKKLRAAL 441 (478)
Q Consensus 410 ~~~~~el~~~keE~E~akaei~~~E~rL~a~~ 441 (478)
..++.+...+..+..+.+..++.++.+|..+.
T Consensus 477 ~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 477 RARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555444
No 190
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=54.68 E-value=3.8e+02 Score=30.74 Aligned_cols=115 Identities=12% Similarity=0.177 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHH
Q 011758 330 NLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEAKIRGASEEMISSLHQLSLETENARQEA 409 (478)
Q Consensus 330 ~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eeka~~~~~~L~~~Lqq~s~Eae~Ak~~a 409 (478)
..+..|+.++......+..+..+-+...-.|..+..++..++..+.... ...+..+..+...++...
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~-------------~~~~~~~~~~~~~a~~~~ 354 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSEL-------------QKITKSLLMQADAAQARE 354 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHH
Confidence 4456667777777766666666665555566666666666655543221 111111223333344433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 410 EEMKNKAMELKEEAGATKIALEEAEKKLRAALEEAEEAKGAETRALDRLRRC 461 (478)
Q Consensus 410 ~~~~~el~~~keE~E~akaei~~~E~rL~a~~kE~eaakasE~~Al~~l~~l 461 (478)
..++..+..++... ..+...+..+..+.++++.++..=...+.+++..
T Consensus 355 ~~L~~~l~~~~~~~----~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~ 402 (754)
T TIGR01005 355 SQLVSDVNQLKAAS----AQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQA 402 (754)
T ss_pred HHHHHHHHHHHHHH----HhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333332222 1233445555566666666655555555554443
No 191
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=54.63 E-value=1.1e+02 Score=24.39 Aligned_cols=60 Identities=12% Similarity=0.048 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 157 KYTSVFSELAAAKQELRKIHQDCNSTLEAKVTAFNLAAAAENSAKANMERVSELSKEIST 216 (478)
Q Consensus 157 q~~~~~~eL~s~k~EL~kl~~el~~~~e~k~~A~~~aeea~~~~~~~~~~ve~L~~El~~ 216 (478)
.....-.-|+++...+......+..+..+++.++.+..+|..........++.|..++..
T Consensus 6 ~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 6 EIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556678888888888889999999999999999999888887777777777777543
No 192
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=52.93 E-value=4.3e+02 Score=30.80 Aligned_cols=246 Identities=22% Similarity=0.245 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Q 011758 161 VFSELAAAKQELRKIHQDCNSTLEAKVTAFNLAAAAENSAKANMERVSELSKEISTVQESIGQVKLATMQAQQEQAKVFA 240 (478)
Q Consensus 161 ~~~eL~s~k~EL~kl~~el~~~~e~k~~A~~~aeea~~~~~~~~~~ve~L~~El~~~Ke~l~~~~~a~~~Aee~~~~~~~ 240 (478)
+++=+..+..|...|+++|+.+...+..+..++--...++++..+.+...+.| -+..+..++.
T Consensus 15 av~gwekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree-----------------~eq~i~~~~~ 77 (769)
T PF05911_consen 15 AVSGWEKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREE-----------------QEQKIHEAVA 77 (769)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHH-----------------HHHHHHHHHH
Confidence 45667889999999999999998888777666666555555555544433322 2222222222
Q ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Q 011758 241 EKDL----QRQSYKATLEESAKKLLALRNQFDPQLTQNLETQLTETMSEIAALQKQLENAKASDLDSVRIVTSELDDAKG 316 (478)
Q Consensus 241 ~~~~----~~~~~~~~lee~~~~l~~L~~e~~~el~k~LE~kL~~~~~ei~~Lq~el~~~~~~~~~~v~~~~~ELee~k~ 316 (478)
.+-. .+..++..|.++.+++..+..+-. .+.+. |.+.+.-|..|.+ .-..+..++..+..
T Consensus 78 ~~s~e~e~~~~~le~~l~e~~~~l~~~~~e~~-~l~~~----l~~~~~~i~~l~~-----------~~~~~e~~~~~l~~ 141 (769)
T PF05911_consen 78 KKSKEWEKIKSELEAKLAELSKRLAESAAENS-ALSKA----LQEKEKLIAELSE-----------EKSQAEAEIEDLMA 141 (769)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHH----HHHHHHHHHHHHH-----------HHHHHHhHHHHHHH
Confidence 2111 111222223333333333332221 11111 2222222333332 22345667777888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhHHHHhhHHHHHHHhHHHHHHhHHHHHHHhhhHH
Q 011758 317 SLQKVAEEESSLRNLVESLKVELENVKKEHSELKE-------KEAETESIAGNLHVLLQKTKSELEACVVEEAKIRGASE 389 (478)
Q Consensus 317 ~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~-------~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eeka~~~~~ 389 (478)
+|+.+..|..+|+-.+-.|.-||+--..+..--.+ .--+.-..|..|++|=+|++.= .++...
T Consensus 142 ~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l----------~rk~lp 211 (769)
T PF05911_consen 142 RLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRAL----------VRKKLP 211 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhccCC
Confidence 88888888888888888888887766555542111 1112234567777777776532 111111
Q ss_pred HHHHHHHHhHHHHHH------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 390 EMISSLHQLSLETEN------------------------------ARQEAEEMKNKAMELKEEAGATKIALEEAEKKLRA 439 (478)
Q Consensus 390 ~L~~~Lqq~s~Eae~------------------------------Ak~~a~~~~~el~~~keE~E~akaei~~~E~rL~a 439 (478)
| |.+|-++..|.+. .......+-..|..+-+|+-.+|..+..-+.-|+.
T Consensus 212 g-paa~a~mk~ev~~~~~~~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~ 290 (769)
T PF05911_consen 212 G-PAALAQMKNEVESLGRDSGENRRRRSPSRPSSPHDFSPQNPQKRSKESEFLTERLQAMEEENKMLKEALAKKNSELQF 290 (769)
T ss_pred C-hHHHHHhHHHHHHhccccccccCCCCCCcccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2333333333322 34556677788889999999999999988888888
Q ss_pred HHHHHHHHHHHHH
Q 011758 440 ALEEAEEAKGAET 452 (478)
Q Consensus 440 ~~kE~eaakasE~ 452 (478)
++-+ -|+++=+
T Consensus 291 sr~~--~a~ta~k 301 (769)
T PF05911_consen 291 SRNM--YAKTASK 301 (769)
T ss_pred HHHH--HHHHHHH
Confidence 7743 3444433
No 193
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=52.89 E-value=2.2e+02 Score=27.32 Aligned_cols=99 Identities=19% Similarity=0.295 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc----chHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 274 NLETQLTETMSEIAALQKQLENAKAS----DLDSVRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSEL 349 (478)
Q Consensus 274 ~LE~kL~~~~~ei~~Lq~el~~~~~~----~~~~v~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l 349 (478)
.++.++.++..++..++..+..++.. .+..-..+...|..+...++.....+..|.. .+...-...+..+..-
T Consensus 86 ~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek---~leL~~k~~~rql~~e 162 (194)
T PF15619_consen 86 ELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEK---QLELENKSFRRQLASE 162 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHH
Confidence 45555555555555555555544321 1122344555555555555555555544443 2222222333333344
Q ss_pred HHHHhhhHHHHhhHHHHHHHhHHHHH
Q 011758 350 KEKEAETESIAGNLHVLLQKTKSELE 375 (478)
Q Consensus 350 ~~~e~~a~~~v~~L~~EL~k~k~ELe 375 (478)
..+-..+...+..|..++..+...|.
T Consensus 163 ~kK~~~~~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 163 KKKHKEAQEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555566666665555543
No 194
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=52.53 E-value=4.9e+02 Score=31.34 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011758 422 EAGATKIALEEAEKKLRAALEE 443 (478)
Q Consensus 422 E~E~akaei~~~E~rL~a~~kE 443 (478)
....++.+.......|..++..
T Consensus 452 ~~~~~~~~~~e~n~eL~~~~~q 473 (1141)
T KOG0018|consen 452 LVSSAEEEPYELNEELVEVLDQ 473 (1141)
T ss_pred HHhhhhhhHHHHHHHHHHHHHH
Confidence 3333333333333444444333
No 195
>PF13514 AAA_27: AAA domain
Probab=52.50 E-value=5e+02 Score=31.44 Aligned_cols=25 Identities=12% Similarity=0.298 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 011758 196 AENSAKANMERVSELSKEISTVQES 220 (478)
Q Consensus 196 a~~~~~~~~~~ve~L~~El~~~Ke~ 220 (478)
..........++..+...+..+...
T Consensus 741 ~~~~~~~~~~ri~~~~~~~~~f~~~ 765 (1111)
T PF13514_consen 741 ALAEIRELRRRIEQMEADLAAFEEQ 765 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444443
No 196
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=52.03 E-value=1.7e+02 Score=29.75 Aligned_cols=55 Identities=16% Similarity=0.097 Sum_probs=32.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 390 EMISSLHQLSLETENARQEAEEMKNKAMELKEEAGATKIALEEAEKKLRAALEEA 444 (478)
Q Consensus 390 ~L~~~Lqq~s~Eae~Ak~~a~~~~~el~~~keE~E~akaei~~~E~rL~a~~kE~ 444 (478)
+|...|-.+..+--+-.=-.-.++.-|.++|.||.++|..|++|...|-..-+=+
T Consensus 93 eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGi 147 (305)
T PF15290_consen 93 ELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGI 147 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhH
Confidence 3444444444432222222222445677888899999999999888877654433
No 197
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=51.83 E-value=4.7e+02 Score=30.90 Aligned_cols=373 Identities=24% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011758 62 KETQLHLAQRELNKLKDQLKNAEDTKAQAFV----ELEKAKRTVEDLSHKLKVVIESKESAIKVTEAAKIQAKQIEESNC 137 (478)
Q Consensus 62 ~e~ql~~~qeel~k~k~ql~~aE~~k~~a~~----EL~~ak~~~eeL~~kLe~a~~e~~~a~e~~e~~k~r~~Ele~~~~ 137 (478)
+..++..+.+.+..+.......+..+.++.. ..... +.....-..+...........+..+.....+.++.....
T Consensus 230 l~~e~e~l~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~ 308 (908)
T COG0419 230 LEQEIEALEERLAELEEEKERLEELKARLLEIESLELEAL-KIREEELRELERLLEELEEKIERLEELEREIEELEEELE 308 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 138 SNPSGSDGARNQDLETEREKYTSVFSELAAAKQELRKIHQDCNSTLEAKVTAFNLAAAAENSAKANMERVSELSKEISTV 217 (478)
Q Consensus 138 ~~~~~~~~a~k~eLe~~~~q~~~~~~eL~s~k~EL~kl~~el~~~~e~k~~A~~~aeea~~~~~~~~~~ve~L~~El~~~ 217 (478)
.. .+...+++.....+......+......+..+..++..+...+.....-.+.-....... ++.+...+.+.
T Consensus 309 ~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~---~~~l~~~~~~~ 380 (908)
T COG0419 309 GL-----RALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEER---LEELEKELEKA 380 (908)
T ss_pred HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHh
Q ss_pred HHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 011758 218 QESIGQVKLATMQAQQEQAKVFAEKDLQRQSYKATLEESAKKLLALRNQFDPQLTQNLETQLTETMSEIAALQKQLEN-- 295 (478)
Q Consensus 218 Ke~l~~~~~a~~~Aee~~~~~~~~~~~~~~~~~~~lee~~~~l~~L~~e~~~el~k~LE~kL~~~~~ei~~Lq~el~~-- 295 (478)
-+................. .....+......+..+...+. ++...|......+..++..+..
T Consensus 381 le~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~e~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~ 444 (908)
T COG0419 381 LERLKQLEEAIQELKEELA-----------ELSAALEEIQEELEELEKELE-----ELERELEELEEEIKKLEEQINQLE 444 (908)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -----------------------hcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 296 -----------------------AKASDLDSVRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEK 352 (478)
Q Consensus 296 -----------------------~~~~~~~~v~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~ 352 (478)
-...+......+..++......+.. ..+...++..+..+..++....... ...
T Consensus 445 ~~~~~~~~l~~~~~~CPvCg~~l~~~~~~~~~~~~~~el~~l~~~i~~-~~~~~~l~~e~~~l~~~l~~~~~~~---~~~ 520 (908)
T COG0419 445 SKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELSR-EKEEAELREEIEELEKELRELEEEL---IEL 520 (908)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Q ss_pred HhhhHHHHhhHHHHHHHhHHHHHHhHHHHHH--HhhhHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 011758 353 EAETESIAGNLHVLLQKTKSELEACVVEEAK--IRGASEEMISSLHQLSLETENARQEAEEMK---NKAMELKEEAGATK 427 (478)
Q Consensus 353 e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eek--a~~~~~~L~~~Lqq~s~Eae~Ak~~a~~~~---~el~~~keE~E~ak 427 (478)
..........+...+..+...++.......+ ....-..+. .|.+...++.........+. ..+.++++-....+
T Consensus 521 ~~~~~~~~~~~~~~~e~l~~~~e~~~~~~~~~~~~~l~~e~~-~le~~~~~l~~~~~~~~~~~~~~~~l~~~r~~~~~~~ 599 (908)
T COG0419 521 LELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELR-QLEDRLQELKELLEELRLLRTRKEELEELRERLKELK 599 (908)
T ss_pred HhHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhh
Q 011758 428 IALEEAEKKLRAALEEAEEA-----KGAETRALDRLRRCLRE 464 (478)
Q Consensus 428 aei~~~E~rL~a~~kE~eaa-----kasE~~Al~~l~~l~e~ 464 (478)
.....++.++......+... ...-..+...+....+.
T Consensus 600 ~~~~~l~~~~~~l~~~~~~~~~~~~~~e~~~~~~~l~~~~~~ 641 (908)
T COG0419 600 KKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEK 641 (908)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
No 198
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=51.01 E-value=2.6e+02 Score=27.61 Aligned_cols=22 Identities=14% Similarity=0.342 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011758 321 VAEEESSLRNLVESLKVELENV 342 (478)
Q Consensus 321 a~~E~~~l~~~v~sLr~ELe~~ 342 (478)
+..+++.|...+.+++++..+.
T Consensus 58 I~~DIn~lE~iIkqa~~er~~~ 79 (230)
T PF10146_consen 58 INQDINTLENIIKQAESERNKR 79 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333
No 199
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.92 E-value=1.3e+02 Score=24.16 Aligned_cols=51 Identities=20% Similarity=0.341 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 303 SVRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKE 353 (478)
Q Consensus 303 ~v~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e 353 (478)
++.-+..|+++.+..-.....|+.......+.|..+-+++|.++.--+++.
T Consensus 19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerl 69 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555556666667777777777777777776555543
No 200
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=50.56 E-value=3.8e+02 Score=29.47 Aligned_cols=39 Identities=26% Similarity=0.401 Sum_probs=29.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 309 SELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHS 347 (478)
Q Consensus 309 ~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~ 347 (478)
.||++++...+.+.+|+..++..+..|+.++......+.
T Consensus 274 ~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~ 312 (511)
T PF09787_consen 274 IELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLE 312 (511)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777888888888887777777766666554
No 201
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=49.57 E-value=2.4e+02 Score=26.95 Aligned_cols=47 Identities=13% Similarity=0.278 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 305 RIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKE 351 (478)
Q Consensus 305 ~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~ 351 (478)
..+..-+.++...|..++..+.........|..++.........+..
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~ 72 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEK 72 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555544445555555555555555444444433
No 202
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=48.93 E-value=4.2e+02 Score=29.47 Aligned_cols=90 Identities=23% Similarity=0.339 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhccc------chHHHHHHHHHHHHHHHhHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Q 011758 284 SEIAALQKQLENAKAS------DLDSVRIVTSELDDAKGSLQKVAE--------------EESSLRNLVESLKVELENVK 343 (478)
Q Consensus 284 ~ei~~Lq~el~~~~~~------~~~~v~~~~~ELee~k~~L~~a~~--------------E~~~l~~~v~sLr~ELe~~k 343 (478)
.-...|++++..++.+ +...+..+.++|++....++.+.+ ....+...+....++..++.
T Consensus 323 e~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~ 402 (570)
T COG4477 323 ENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQ 402 (570)
T ss_pred HHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3345666666554432 445678899999999988887775 34446666667777777777
Q ss_pred HHHHHHHHHHhhhHHHHhhHHHHHHHhHHH
Q 011758 344 KEHSELKEKEAETESIAGNLHVLLQKTKSE 373 (478)
Q Consensus 344 ~el~~l~~~e~~a~~~v~~L~~EL~k~k~E 373 (478)
..|..|+..+-.|.-...++...|.-++.-
T Consensus 403 e~L~~LrkdEl~Are~l~~~~~~l~eikR~ 432 (570)
T COG4477 403 EHLTSLRKDELEARENLERLKSKLHEIKRY 432 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777776665555555555544444
No 203
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=48.15 E-value=4e+02 Score=29.48 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=16.7
Q ss_pred HHHhhhHHHHhhHHHHHHHhHHHHHHhH
Q 011758 351 EKEAETESIAGNLHVLLQKTKSELEACV 378 (478)
Q Consensus 351 ~~e~~a~~~v~~L~~EL~k~k~ELe~~~ 378 (478)
.+.+..+-.+.+|++.|.+-+.+|+.++
T Consensus 487 ~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 487 EQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555666666666666666666554
No 204
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=47.91 E-value=3.3e+02 Score=28.07 Aligned_cols=265 Identities=18% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHH
Q 011758 165 LAAAKQELRKIHQDCNSTLEAKVTAFNLAAAAENSAKANMERVSELSKEISTVQESIGQVKLATMQAQQEQAKVFAEKDL 244 (478)
Q Consensus 165 L~s~k~EL~kl~~el~~~~e~k~~A~~~aeea~~~~~~~~~~ve~L~~El~~~Ke~l~~~~~a~~~Aee~~~~~~~~~~~ 244 (478)
+.+..++-..|+.+++ ....++..|..++-.++..-..+++...+=++.+.
T Consensus 29 ~~sL~qen~~Lk~El~---------------------~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~is-------- 79 (310)
T PF09755_consen 29 IESLQQENRVLKRELE---------------------TEKARCKHLQEENRALREASVRIQAKAEQEEEFIS-------- 79 (310)
T ss_pred HHHHHHHhHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHH
Q 011758 245 QRQSYKATLEESAKKLLALRNQFD---PQLTQNLETQLTETMSEIAALQKQLENAKASDLDSVRIVTSELDDAKGSLQKV 321 (478)
Q Consensus 245 ~~~~~~~~lee~~~~l~~L~~e~~---~el~k~LE~kL~~~~~ei~~Lq~el~~~~~~~~~~v~~~~~ELee~k~~L~~a 321 (478)
+..-+.+..+++.-..|-..|. ..++.+|-.+|.....+-..|...++.=+. -.|..+.+.|..+.......
T Consensus 80 --N~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE---~~V~kL~k~i~~Le~e~~~~ 154 (310)
T PF09755_consen 80 --NTLLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQE---YLVNKLQKKIERLEKEKSAK 154 (310)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHHHHhhhH---------HHHH
Q 011758 322 AEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEAKIRGAS---------EEMI 392 (478)
Q Consensus 322 ~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eeka~~~~---------~~L~ 392 (478)
..+...|+..-..|.+-|++....+.--..+. +..|..+...+...|+.....-.--++.. ..+.
T Consensus 155 q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kq------m~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~ 228 (310)
T PF09755_consen 155 QEELERLRREKVDLENTLEQEQEALVNRLWKQ------MDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLS 228 (310)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHH
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011758 393 SSLHQLSLETENARQEAEEMKNKAMELKEEAGATKIALEEAEKKLRAAL-EEAEEAKGAETRALDRLRRCLRELVLHVHL 471 (478)
Q Consensus 393 ~~Lqq~s~Eae~Ak~~a~~~~~el~~~keE~E~akaei~~~E~rL~a~~-kE~eaakasE~~Al~~l~~l~e~~~~~~~~ 471 (478)
.-++.+..|...-+......+.+-..-..-..+--..+..=+.+|+-.+ .|++ +-.+=-+.++++++|.-.|
T Consensus 229 shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~eek~ireEN~rLqr~L~~E~e-------rreal~R~lsesEsslE~d 301 (310)
T PF09755_consen 229 SHIRSLRQEVSRLRQQLAASQQEHSEKMAQYLQEEKEIREENRRLQRKLQREVE-------RREALCRHLSESESSLEMD 301 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcc
Q ss_pred ccccc
Q 011758 472 LLNLV 476 (478)
Q Consensus 472 ~~~~~ 476 (478)
-+..|
T Consensus 302 dEr~f 306 (310)
T PF09755_consen 302 DERQF 306 (310)
T ss_pred hHhhh
No 205
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=47.53 E-value=4.3e+02 Score=29.21 Aligned_cols=92 Identities=15% Similarity=0.194 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 011758 167 AAKQELRKIHQDCNSTLEAKVTAFNLAAAAENSAKANMERVSELSKEISTVQESIGQVKLATMQAQQEQAKVFAEKDLQR 246 (478)
Q Consensus 167 s~k~EL~kl~~el~~~~e~k~~A~~~aeea~~~~~~~~~~ve~L~~El~~~Ke~l~~~~~a~~~Aee~~~~~~~~~~~~~ 246 (478)
+...+|+..-.++....++-..-+.+..++...++.+.-.+++|-.-|..++.......+.+.+-+.+.+
T Consensus 216 s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyA---------- 285 (596)
T KOG4360|consen 216 SGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYA---------- 285 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----------
Confidence 3344555555555555666666666777777777777777788888888888877777766666655544
Q ss_pred HHHHHHHHHHHHHHHHHHhcccH
Q 011758 247 QSYKATLEESAKKLLALRNQFDP 269 (478)
Q Consensus 247 ~~~~~~lee~~~~l~~L~~e~~~ 269 (478)
.+...+.+++.+|+.|+.-..|
T Consensus 286 -E~m~~~~EaeeELk~lrs~~~p 307 (596)
T KOG4360|consen 286 -ECMQMLHEAEEELKCLRSCDAP 307 (596)
T ss_pred -HHHHHHHHHHHHHHhhccCCCc
Confidence 5666789999999999986554
No 206
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=47.34 E-value=2.1e+02 Score=25.69 Aligned_cols=91 Identities=25% Similarity=0.363 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 274 NLETQLTETMSEIAALQKQLENAKASDLDSVRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKE 353 (478)
Q Consensus 274 ~LE~kL~~~~~ei~~Lq~el~~~~~~~~~~v~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e 353 (478)
+|...+....+++..|+..+. .++..+.++...+..+......+...+.++..-+...+.++..++..-
T Consensus 56 ~l~~~~~~l~~d~~~l~~~~~-----------rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~ 124 (151)
T PF11559_consen 56 DLSDKLRRLRSDIERLQNDVE-----------RLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQL 124 (151)
T ss_pred HHHHHHHHHHhHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333 333444444444444455555555555555555555555555443322
Q ss_pred hhhHHHHhhHHHHHHHhHHHHHHhH
Q 011758 354 AETESIAGNLHVLLQKTKSELEACV 378 (478)
Q Consensus 354 ~~a~~~v~~L~~EL~k~k~ELe~~~ 378 (478)
......+..++.+-..|++.++
T Consensus 125 ---~~~~tq~~~e~rkke~E~~kLk 146 (151)
T PF11559_consen 125 ---QQRKTQYEHELRKKEREIEKLK 146 (151)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHH
Confidence 2222344455555544544443
No 207
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=46.43 E-value=3.5e+02 Score=27.82 Aligned_cols=279 Identities=15% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Q 011758 157 KYTSVFSELAAAKQELRKIHQDCNSTLEAKVTAFNLAAAAENSAKANMERVSELSKEISTVQESIGQVKLATMQAQQEQA 236 (478)
Q Consensus 157 q~~~~~~eL~s~k~EL~kl~~el~~~~e~k~~A~~~aeea~~~~~~~~~~ve~L~~El~~~Ke~l~~~~~a~~~Aee~~~ 236 (478)
....+...|......+..-...++.+..--...+.........+..+.++...|..+...+...+..+..+...-+.-..
T Consensus 2 ~~~K~~~~l~q~l~~l~~~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCR 81 (309)
T PF09728_consen 2 EVKKAARQLMQSLNKLSSPEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCR 81 (309)
T ss_pred chhhHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Q 011758 237 KVFAEKDLQRQSYKATLEESAKKLLALRNQFDPQLTQNLETQLTETMSEIAALQKQLENAKASDLDSVRIVTSELDDAKG 316 (478)
Q Consensus 237 ~~~~~~~~~~~~~~~~lee~~~~l~~L~~e~~~el~k~LE~kL~~~~~ei~~Lq~el~~~~~~~~~~v~~~~~ELee~k~ 316 (478)
........-...+......-+.+-..+...|. ....++...+.+-......+-.+-..+. +.+..+-..-+--..
T Consensus 82 ELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq-~~L~dIq~~~ee~~~~~~k~~~eN~~L~----eKlK~l~eQye~rE~ 156 (309)
T PF09728_consen 82 ELQKQNKKLKEESKRRAREEEEKRKELSEKFQ-ATLKDIQAQMEEQSERNIKLREENEELR----EKLKSLIEQYELREE 156 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q ss_pred hHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhhhHHHHhhHHHHHHHhHHHHHHhH
Q 011758 317 SLQKVAE----EESSLRNLVESLKVELENVKKEHSELKE--------------KEAETESIAGNLHVLLQKTKSELEACV 378 (478)
Q Consensus 317 ~L~~a~~----E~~~l~~~v~sLr~ELe~~k~el~~l~~--------------~e~~a~~~v~~L~~EL~k~k~ELe~~~ 378 (478)
.+.+... |+.-+.+.+...+..+.........+.. .+.....++.-+...-.....=|.-.-
T Consensus 157 ~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSN 236 (309)
T PF09728_consen 157 HFEKLLKQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSN 236 (309)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q ss_pred HHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 379 VEEAKIRGASEEMISSLHQLSLETENARQEAEEMKNKAMELKEEAGATKIALEEAEKKLRAA 440 (478)
Q Consensus 379 ~~Eeka~~~~~~L~~~Lqq~s~Eae~Ak~~a~~~~~el~~~keE~E~akaei~~~E~rL~a~ 440 (478)
.-=..-+.-|+.|+..+.++-.|....+...+.....+-.+-+|.......+.....++.-+
T Consensus 237 e~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kL 298 (309)
T PF09728_consen 237 EVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKL 298 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 208
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=45.43 E-value=2.8e+02 Score=26.47 Aligned_cols=55 Identities=22% Similarity=0.293 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 386 GASEEMISSLHQLSLETENARQEAEEMKNKAMELKEEAGATKIALEEAEKKLRAA 440 (478)
Q Consensus 386 ~~~~~L~~~Lqq~s~Eae~Ak~~a~~~~~el~~~keE~E~akaei~~~E~rL~a~ 440 (478)
..+.+|...|-++.......+...+.+..++..++..++.+...+..++.+-+.+
T Consensus 131 ~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 131 SEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555445555555555666666666666666666666655543
No 209
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=45.13 E-value=2.9e+02 Score=26.55 Aligned_cols=108 Identities=20% Similarity=0.261 Sum_probs=60.5
Q ss_pred ccccCCCCchh-hHHHHhhhcCCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 18 GEIDTSAPFQS-VKDAVTLFGEGAFSGEKPSIRKPKPHSAERVLAKETQLHLAQRELNKLKDQLKNAEDTKAQAFVELEK 96 (478)
Q Consensus 18 ~eidt~~p~~S-Vk~Avs~Fg~~~~~~~~~~~~r~~~~~~e~~~~~e~ql~~~qeel~k~k~ql~~aE~~k~~a~~EL~~ 96 (478)
|.++.+-||.. -|++.. |++..| ..|.+.. -+..++.-+..=.+--.+...|+..+|....+++.||+.
T Consensus 51 g~~~~~dp~~ALqRD~~~--~~~~~~-~~~v~~~-------pl~~Le~l~~~qk~~q~Rm~~qL~~aE~rhrr~i~eLe~ 120 (192)
T PF09727_consen 51 GFYNPNDPFLALQRDSEA--AGGEKE-EEDVYEN-------PLAELEKLMEHQKKMQRRMLEQLAAAEKRHRRTIQELEE 120 (192)
T ss_pred cCCCcCcHHHHHHhHHHh--cCCCCc-cCcchhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666778875 455433 222121 1233222 122222222333344456778899999999999999999
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhh
Q 011758 97 AKRTVEDLSHKLKVV----IESKESAIKVTEAAKIQAKQIEES 135 (478)
Q Consensus 97 ak~~~eeL~~kLe~a----~~e~~~a~e~~e~~k~r~~Ele~~ 135 (478)
-|+-=.+...+-... ..++.+..+..|..+.....+++.
T Consensus 121 EKrkh~~~~aqgDD~t~lLEkEReRLkq~lE~Ek~~~~~~EkE 163 (192)
T PF09727_consen 121 EKRKHAEDMAQGDDFTNLLEKERERLKQQLEQEKAQQKKLEKE 163 (192)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888665444433332 234455555566666655555443
No 210
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.06 E-value=3.4e+02 Score=27.38 Aligned_cols=63 Identities=24% Similarity=0.436 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHH
Q 011758 248 SYKATLEESAKKLLALRNQFDPQLTQNLETQLTETMSEIAALQKQLENAKASDLDSVRIVTSELDDAKGSLQ 319 (478)
Q Consensus 248 ~~~~~lee~~~~l~~L~~e~~~el~k~LE~kL~~~~~ei~~Lq~el~~~~~~~~~~v~~~~~ELee~k~~L~ 319 (478)
.-...+..++..+..+..+++ +|.+++.++.+.+..+++++.... ..+..+.+++.+.+.+|.
T Consensus 35 ~~ds~l~~~~~~~~~~q~ei~-----~L~~qi~~~~~k~~~~~~~i~~~~----~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 35 NQDSKLSELQKEKKNIQNEIE-----SLDNQIEEIQSKIDELQKEIDQSK----AEIKKLQKEIAELKENIV 97 (265)
T ss_pred hhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 334456666666667777665 666666677777777777666555 345555566665555443
No 211
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=44.59 E-value=3.3e+02 Score=26.99 Aligned_cols=229 Identities=13% Similarity=0.181 Sum_probs=0.0
Q ss_pred CccccccCCCCchh-hHHHHhhhcCCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 15 AEVGEIDTSAPFQS-VKDAVTLFGEGAFSGEKPSIRKPKPHSAERVLAKETQLHLAQRELNKLKDQLKNAEDTKAQAFVE 93 (478)
Q Consensus 15 ~~~~eidt~~p~~S-Vk~Avs~Fg~~~~~~~~~~~~r~~~~~~e~~~~~e~ql~~~qeel~k~k~ql~~aE~~k~~a~~E 93 (478)
+..|-+.+|-.+.+ +.....-|.+...+.+.+.. ++..++.++..+..++..++++...+-..=.++...
T Consensus 11 ~~t~~~~~~~~l~~~~e~~~~~L~~~~~~~~~~~~---------~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~ 81 (264)
T PF06008_consen 11 ALTGAWPAPYKLLSSIEDLTNQLRSYRSKLNPQKQ---------QLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNN 81 (264)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHhccchhHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHH
Q 011758 94 LEKAKRTVEDLSHKLKVVIESKESA-------------------IKVTEAAKIQAKQIEESNCSNPSGSDGARNQDLETE 154 (478)
Q Consensus 94 L~~ak~~~eeL~~kLe~a~~e~~~a-------------------~e~~e~~k~r~~Ele~~~~~~~~~~~~a~k~eLe~~ 154 (478)
.+.+..-+.+|...+..+...-... ....+-++.-+.+|+......
T Consensus 82 t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~f~~--------------- 146 (264)
T PF06008_consen 82 TERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRDFTP--------------- 146 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhccchh---------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Q 011758 155 REKYTSVFSELAAAKQELRKIHQDCNSTLEAKVTAFNLAAAAENSAKANMERVSELSKEISTVQESIGQVKLATMQAQQE 234 (478)
Q Consensus 155 ~~q~~~~~~eL~s~k~EL~kl~~el~~~~e~k~~A~~~aeea~~~~~~~~~~ve~L~~El~~~Ke~l~~~~~a~~~Aee~ 234 (478)
++..+-.||..+..=|.+++..|. +...+-......+...+......|..+++.+..+.....+|...
T Consensus 147 --~~~~Ae~El~~A~~LL~~v~~~~~----------~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~l 214 (264)
T PF06008_consen 147 --QRQNAEDELKEAEDLLSRVQKWFQ----------KPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDL 214 (264)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHh----------hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH---HHHHHHHHHHHHHH
Q 011758 235 QAKVFAEKDLQRQSYKATLEESAKKLLALRNQFDPQLTQNLET---QLTETMSEIAALQK 291 (478)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~lee~~~~l~~L~~e~~~el~k~LE~---kL~~~~~ei~~Lq~ 291 (478)
-. .....++....+...+..... .+...|.. -|..+...+..++.
T Consensus 215 n~-----------~n~~~l~~~~~k~~~l~~~~~-~~~~~L~~a~~~L~~a~~ll~~~~~ 262 (264)
T PF06008_consen 215 NR-----------ANQKNLEDLEKKKQELSEQQN-EVSETLKEAEDLLDQANDLLQEMQD 262 (264)
T ss_pred HH-----------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhh
No 212
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=44.22 E-value=1.2e+02 Score=27.96 Aligned_cols=7 Identities=43% Similarity=0.662 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 011758 285 EIAALQK 291 (478)
Q Consensus 285 ei~~Lq~ 291 (478)
+|..|++
T Consensus 80 ei~~L~~ 86 (169)
T PF07106_consen 80 EIKELRE 86 (169)
T ss_pred HHHHHHH
Confidence 3333333
No 213
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=44.02 E-value=4.5e+02 Score=28.40 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011758 415 KAMELKEEAGATKIALEEAEKKL 437 (478)
Q Consensus 415 el~~~keE~E~akaei~~~E~rL 437 (478)
++..+..+.+.++.....+-.|+
T Consensus 356 el~~L~Re~~~~~~~Y~~l~~r~ 378 (498)
T TIGR03007 356 ELTQLNRDYEVNKSNYEQLLTRR 378 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444333333
No 214
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=44.00 E-value=1.1e+02 Score=30.76 Aligned_cols=68 Identities=25% Similarity=0.352 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhH
Q 011758 304 VRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACV 378 (478)
Q Consensus 304 v~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~ 378 (478)
+..+..++...+..+.++..+...|...++.-+.||++.++-|..|+ +--.....|..++..||..+-
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq-------~vRPAfmdEyEklE~EL~~lY 238 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ-------SVRPAFMDEYEKLEEELQKLY 238 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcChHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555544444444444444444444444333 333555556666655555544
No 215
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=43.88 E-value=3.3e+02 Score=26.85 Aligned_cols=123 Identities=13% Similarity=0.199 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHHHHhhhHHHHH-------HHH
Q 011758 323 EEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEAKIRGASEEMI-------SSL 395 (478)
Q Consensus 323 ~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eeka~~~~~~L~-------~~L 395 (478)
.|.++|+.+...++.|++..-.-|..+.+....-...+..+.......+..++..- ++......... ...
T Consensus 54 ~E~GTl~~sw~~~~~E~e~~a~~H~~la~~L~~~~~~~~~f~~~qk~~rKk~e~~~---ek~~K~~~~~~k~~~ksKk~Y 130 (240)
T cd07672 54 TEINTLKRSLDVFKQQIDNVGQSHIQLAQTLRDEAKKMEDFRERQKLARKKIELIM---DAIHKQRAMQFKKTMESKKNY 130 (240)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 47778888888888888888888888777655422234455444444333332221 11111111111 122
Q ss_pred HHhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 396 HQLSLETENARQEAE-----EMKNKAMELKEEAGATKIALEEAEKKLRAALEEAEEAK 448 (478)
Q Consensus 396 qq~s~Eae~Ak~~a~-----~~~~el~~~keE~E~akaei~~~E~rL~a~~kE~eaak 448 (478)
++.-.+++.|..... ..-.++.++....+.++..+......++.++..+...+
T Consensus 131 e~~Cke~~~a~~~~~~~~~~~~~ke~~K~~~Kl~K~~~~~~k~~~~Y~~~v~~l~~~~ 188 (240)
T cd07672 131 EQKCRDKDEAEQAVNRNANLVNVKQQEKLFAKLAQSKQNAEDADRLYMQNISVLDKIR 188 (240)
T ss_pred HHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222223333333221 12346667777777777777788888888877776664
No 216
>COG5420 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=43.62 E-value=1.5e+02 Score=23.28 Aligned_cols=30 Identities=33% Similarity=0.440 Sum_probs=22.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 146 ARNQDLETEREKYTSVFSELAAAKQELRKIH 176 (478)
Q Consensus 146 a~k~eLe~~~~q~~~~~~eL~s~k~EL~kl~ 176 (478)
-|- ++..+-..--.+.++|+.+++||.++.
T Consensus 39 ~wt-ei~~VA~kt~~~yaeLD~~k~ELakle 68 (71)
T COG5420 39 KWT-EIMAVAEKTFEAYAELDAAKRELAKLE 68 (71)
T ss_pred cHH-HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 364 455555555678999999999999875
No 217
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=43.00 E-value=4.3e+02 Score=29.63 Aligned_cols=51 Identities=24% Similarity=0.260 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHH
Q 011758 330 NLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVE 380 (478)
Q Consensus 330 ~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~ 380 (478)
+.|+.|..|-+-++.++...++-.-....+|-.|++||.++++++..++.+
T Consensus 329 akVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~ 379 (832)
T KOG2077|consen 329 AKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQK 379 (832)
T ss_pred HHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444455667778888888877766543
No 218
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=42.52 E-value=3.1e+02 Score=26.07 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=14.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Q 011758 392 ISSLHQLSLETENARQEAEEMKNKA 416 (478)
Q Consensus 392 ~~~Lqq~s~Eae~Ak~~a~~~~~el 416 (478)
|..++++..++..++..++.-...+
T Consensus 134 p~~i~~~~~~~~~~~~~anrwTDNI 158 (188)
T PF03962_consen 134 PEKIEKLKEEIKIAKEAANRWTDNI 158 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4556666666666666666544433
No 219
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=42.38 E-value=2.7e+02 Score=30.36 Aligned_cols=53 Identities=23% Similarity=0.271 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-hhHHHHHHHhHHHHHHhH
Q 011758 326 SSLRNLVESLKVELENVKKEHSELKEKEAETESIA-GNLHVLLQKTKSELEACV 378 (478)
Q Consensus 326 ~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v-~~L~~EL~k~k~ELe~~~ 378 (478)
..++..+..|..+=+.++.+..+|+.++.....+| ..+..+-..+..+.+.++
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~ 122 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLK 122 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33344444555555555666666666666655555 333333333333444443
No 220
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=41.70 E-value=2.7e+02 Score=28.15 Aligned_cols=52 Identities=15% Similarity=0.309 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhH
Q 011758 327 SLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACV 378 (478)
Q Consensus 327 ~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~ 378 (478)
+++..+..+..++...+..+..+...+.....+|..-..||.+....|..++
T Consensus 166 ~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 166 ALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777777777777777777777777765
No 221
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=40.97 E-value=96 Score=23.73 Aligned_cols=30 Identities=17% Similarity=0.337 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 323 EEESSLRNLVESLKVELENVKKEHSELKEK 352 (478)
Q Consensus 323 ~E~~~l~~~v~sLr~ELe~~k~el~~l~~~ 352 (478)
.++..+...+.+++++++..+..+..+.+.
T Consensus 7 n~~~~~~~~i~tvk~en~~i~~~ve~i~en 36 (55)
T PF05377_consen 7 NELPRIESSINTVKKENEEISESVEKIEEN 36 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555554443
No 222
>PRK10698 phage shock protein PspA; Provisional
Probab=40.51 E-value=3.6e+02 Score=26.28 Aligned_cols=63 Identities=13% Similarity=0.157 Sum_probs=33.3
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 385 RGASEEMISSLHQLSLETENARQEAEEMKNKAMELKE-----------EAGATKIALEEAEKKLRAALEEAEEA 447 (478)
Q Consensus 385 ~~~~~~L~~~Lqq~s~Eae~Ak~~a~~~~~el~~~ke-----------E~E~akaei~~~E~rL~a~~kE~eaa 447 (478)
......|...+.++......++.+...+.-....++. ....+...++.+|.++...-.++++.
T Consensus 112 ~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~Ea~aea~ 185 (222)
T PRK10698 112 DETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAESH 185 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhHh
Confidence 3444455555555555555555444443332222222 22345556667777777777777664
No 223
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=40.14 E-value=3.7e+02 Score=26.37 Aligned_cols=47 Identities=17% Similarity=0.284 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 305 RIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKE 351 (478)
Q Consensus 305 ~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~ 351 (478)
..+..-+.+++..|..++..+..+......+..++++.......+..
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~ 73 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEE 73 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555555555555444433
No 224
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=38.90 E-value=45 Score=31.22 Aligned_cols=21 Identities=24% Similarity=0.514 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011758 273 QNLETQLTETMSEIAALQKQL 293 (478)
Q Consensus 273 k~LE~kL~~~~~ei~~Lq~el 293 (478)
.|+|.++...-...+.|+.||
T Consensus 3 eD~EsklN~AIERnalLE~EL 23 (166)
T PF04880_consen 3 EDFESKLNQAIERNALLESEL 23 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHH
Confidence 477778877777777776665
No 225
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=38.84 E-value=21 Score=31.22 Aligned_cols=39 Identities=31% Similarity=0.410 Sum_probs=16.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 314 AKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEK 352 (478)
Q Consensus 314 ~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~ 352 (478)
+...|+.+..+...|......|+.++..+...+..+...
T Consensus 23 VD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~ 61 (131)
T PF05103_consen 23 VDDFLDELAEELERLQRENAELKEEIEELQAQLEELREE 61 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 344455555555555555555555555555555544433
No 226
>PF13166 AAA_13: AAA domain
Probab=38.75 E-value=6.2e+02 Score=28.59 Aligned_cols=47 Identities=28% Similarity=0.359 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHh
Q 011758 324 EESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKT 370 (478)
Q Consensus 324 E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~ 370 (478)
.+..+...+..++.++...+..+..+.........-+..++.+|...
T Consensus 425 ~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 425 EINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 33334444444444444444444444444333344444444444443
No 227
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=38.73 E-value=54 Score=33.95 Aligned_cols=68 Identities=22% Similarity=0.294 Sum_probs=5.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHh
Q 011758 310 ELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEAC 377 (478)
Q Consensus 310 ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~ 377 (478)
+|+.....|...+.+++.+...+..|+.-|......+..+...-..-...|.+|...++-+..++..+
T Consensus 64 ~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNL 131 (326)
T PF04582_consen 64 DLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNL 131 (326)
T ss_dssp ------------------------------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhh
Confidence 33333333333333444444444444444444444444433333333333444444444333333333
No 228
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=38.23 E-value=6.7e+02 Score=28.78 Aligned_cols=43 Identities=23% Similarity=0.255 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhH
Q 011758 272 TQNLETQLTETMSEIAALQKQLENAKASDLDSVRIVTSELDDAKGSL 318 (478)
Q Consensus 272 ~k~LE~kL~~~~~ei~~Lq~el~~~~~~~~~~v~~~~~ELee~k~~L 318 (478)
..+|..++.....++..+...+...| -.|..++..+++++..+
T Consensus 290 i~~L~~~l~~l~~~~~~l~~~y~~~h----P~v~~l~~qi~~l~~~i 332 (754)
T TIGR01005 290 IQRLRERQAELRATIADLSTTMLANH----PRVVAAKSSLADLDAQI 332 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333333 24445555555544443
No 229
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=38.18 E-value=2.1e+02 Score=22.98 Aligned_cols=60 Identities=15% Similarity=0.123 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHh
Q 011758 318 LQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEAC 377 (478)
Q Consensus 318 L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~ 377 (478)
|....+|=..++-..-.||..|...+.+|....=+---+-.-|.+|..|....+..|..+
T Consensus 10 L~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~l 69 (70)
T PF08606_consen 10 LSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALAEL 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhc
Confidence 344456666777777788888888888888776655556666788888888877776654
No 230
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=38.02 E-value=5.8e+02 Score=28.02 Aligned_cols=49 Identities=22% Similarity=0.365 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 011758 64 TQLHLAQRELNKLKDQLKNAEDTKAQAFVELEKAKRT----VEDLSHKLKVVI 112 (478)
Q Consensus 64 ~ql~~~qeel~k~k~ql~~aE~~k~~a~~EL~~ak~~----~eeL~~kLe~a~ 112 (478)
..|..+..+++..+.++......|...+..-...+++ +..|..+|..+.
T Consensus 116 ~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld 168 (511)
T PF09787_consen 116 IRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLD 168 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHH
Confidence 3566678888888888888766677776665555555 344555554444
No 231
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=36.66 E-value=3.4e+02 Score=24.88 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHH
Q 011758 328 LRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSE 373 (478)
Q Consensus 328 l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~E 373 (478)
+..+++.|+..++...+.+..+.+.....+..+..+..+++.+..+
T Consensus 92 ~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~ 137 (145)
T COG1730 92 ADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQK 137 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666666555555555555555554333
No 232
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=35.71 E-value=4.1e+02 Score=25.60 Aligned_cols=39 Identities=8% Similarity=0.164 Sum_probs=18.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 311 LDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSEL 349 (478)
Q Consensus 311 Lee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l 349 (478)
+.++...|..++..+......-..+..++..........
T Consensus 33 irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~ 71 (219)
T TIGR02977 33 IQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADW 71 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444455555555555555555444433
No 233
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=35.46 E-value=4e+02 Score=26.30 Aligned_cols=18 Identities=17% Similarity=0.449 Sum_probs=7.4
Q ss_pred HHHHHHHHHhHHHHHHHH
Q 011758 308 TSELDDAKGSLQKVAEEE 325 (478)
Q Consensus 308 ~~ELee~k~~L~~a~~E~ 325 (478)
+..+++++.+|+....|-
T Consensus 134 ke~~ee~kekl~E~~~Ek 151 (290)
T COG4026 134 KEDYEELKEKLEELQKEK 151 (290)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444433333
No 234
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=34.57 E-value=6.2e+02 Score=27.33 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 011758 162 FSELAAAKQELRKIHQDCNST 182 (478)
Q Consensus 162 ~~eL~s~k~EL~kl~~el~~~ 182 (478)
..++..++.+|.-||+=|...
T Consensus 150 ~~Ev~~LRreLavLRQl~~~~ 170 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQLYSEF 170 (424)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777766543
No 235
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=34.27 E-value=2.4e+02 Score=25.96 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 011758 248 SYKATLEESAKKLLALRN 265 (478)
Q Consensus 248 ~~~~~lee~~~~l~~L~~ 265 (478)
.|+.+|....+.|..|+.
T Consensus 31 ~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 31 NLKTQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 444444444444444444
No 236
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=34.14 E-value=4.9e+02 Score=26.03 Aligned_cols=44 Identities=16% Similarity=0.074 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHH
Q 011758 324 EESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLL 367 (478)
Q Consensus 324 E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL 367 (478)
+.++|..+...++.+++.+-..+..+..+.......+..+..+.
T Consensus 61 ~~Gt~~~~~~~~~~e~e~~a~~H~~la~~L~~~~~~l~~~~~~~ 104 (269)
T cd07673 61 QLGTFAPVWDVFKTSTEKLANCHLELVRKLQELIKEVQKYGEEQ 104 (269)
T ss_pred CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777666666555543333334444333
No 237
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=34.14 E-value=5.4e+02 Score=26.47 Aligned_cols=81 Identities=12% Similarity=0.133 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 343 KKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEAKIRGASEEMISSLHQLSLETENARQEAEEMKNKAMELKEE 422 (478)
Q Consensus 343 k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eeka~~~~~~L~~~Lqq~s~Eae~Ak~~a~~~~~el~~~keE 422 (478)
+.+|.++.++-..|=+.-+.|--|...+.-++..+++.-+.....+..+...+.+...+.+.-|.....++.++..++.+
T Consensus 83 k~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~ 162 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQ 162 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777777777777777777777777665544444444444444444444444444444444444444444
Q ss_pred H
Q 011758 423 A 423 (478)
Q Consensus 423 ~ 423 (478)
+
T Consensus 163 L 163 (302)
T PF09738_consen 163 L 163 (302)
T ss_pred H
Confidence 4
No 238
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=33.87 E-value=3.9e+02 Score=24.75 Aligned_cols=61 Identities=20% Similarity=0.297 Sum_probs=31.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhH
Q 011758 312 DDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACV 378 (478)
Q Consensus 312 ee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~ 378 (478)
..++..|+.+...+..+...++-+.+++...+..+.+ .++..+..|...++.++-.++.+.
T Consensus 75 ~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~q------es~~~veel~eqV~el~~i~emv~ 135 (157)
T COG3352 75 QDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQ------ESRGIVEELEEQVNELKMIVEMVI 135 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHH------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333344444444444444444444443322 334457788888888777776664
No 239
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=33.63 E-value=5.2e+02 Score=26.16 Aligned_cols=29 Identities=31% Similarity=0.393 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 86 TKAQAFVELEKAKRTVEDLSHKLKVVIES 114 (478)
Q Consensus 86 ~k~~a~~EL~~ak~~~eeL~~kLe~a~~e 114 (478)
....++.+|+.++--|.=|..+|+.+...
T Consensus 153 e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea 181 (269)
T PF05278_consen 153 EMIATLKDLESAKVKVDWLRSKLEEILEA 181 (269)
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHH
Confidence 45678888888888888888888887643
No 240
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=33.61 E-value=2.5e+02 Score=22.51 Aligned_cols=18 Identities=11% Similarity=0.278 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 011758 302 DSVRIVTSELDDAKGSLQ 319 (478)
Q Consensus 302 ~~v~~~~~ELee~k~~L~ 319 (478)
+++..++.++++.+..-.
T Consensus 18 eti~~Lq~e~eeLke~n~ 35 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNN 35 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555444444333
No 241
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=32.98 E-value=5.7e+02 Score=26.40 Aligned_cols=49 Identities=20% Similarity=0.149 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHh
Q 011758 329 RNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEAC 377 (478)
Q Consensus 329 ~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~ 377 (478)
...|.+|..+|..-..+...-++.....-++|..|...+...-.|-+.+
T Consensus 212 n~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL 260 (306)
T PF04849_consen 212 NQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEEL 260 (306)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3344445555555444444444444444444444444444444443333
No 242
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=31.96 E-value=2.2e+02 Score=31.75 Aligned_cols=52 Identities=23% Similarity=0.225 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011758 305 RIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAET 356 (478)
Q Consensus 305 ~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a 356 (478)
.++..||-+...+-++...|+..+...++.|+..|.+.+.+|.+|+.....+
T Consensus 89 ~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqa 140 (907)
T KOG2264|consen 89 ASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQA 140 (907)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHH
Confidence 4566666666767677777777777777777777777777777766544333
No 243
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=31.93 E-value=4.2e+02 Score=24.52 Aligned_cols=165 Identities=19% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Q 011758 207 VSELSKEISTVQESIGQVKLATMQAQQEQAKVFAEKDLQRQSYKATLEESAKKLLALRNQFDPQLTQNLETQLTETMSEI 286 (478)
Q Consensus 207 ve~L~~El~~~Ke~l~~~~~a~~~Aee~~~~~~~~~~~~~~~~~~~lee~~~~l~~L~~e~~~el~k~LE~kL~~~~~ei 286 (478)
++.+...++.++-.+..+......-++--. .-.-...++++-+...|.. ++.+-..++
T Consensus 8 i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge----------~L~~iDFeqLkien~~l~~------------kIeERn~eL 65 (177)
T PF13870_consen 8 ISKLRLKNITLKHQLAKLEEQLRQKEELGE----------GLHLIDFEQLKIENQQLNE------------KIEERNKEL 65 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------cccHHHHHHHHHHHHHHHH------------HHHHHHHHH
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-----Hh
Q 011758 287 AALQKQLENAKASDLDSVRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETESI-----AG 361 (478)
Q Consensus 287 ~~Lq~el~~~~~~~~~~v~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~-----v~ 361 (478)
..|+..+...- ..+.-.+.-|..+...+...+.++.........++.+|..++.+...+...-...... ++
T Consensus 66 ~~Lk~~~~~~v----~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P 141 (177)
T PF13870_consen 66 LKLKKKIGKTV----QILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVP 141 (177)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q ss_pred hHHHHHHHhHHHHHHhHHHHHHHhhhHHHHHHHHHH
Q 011758 362 NLHVLLQKTKSELEACVVEEAKIRGASEEMISSLHQ 397 (478)
Q Consensus 362 ~L~~EL~k~k~ELe~~~~~Eeka~~~~~~L~~~Lqq 397 (478)
.|-.+..++..++...+..-..-+.....+...+++
T Consensus 142 ~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~~i~~ 177 (177)
T PF13870_consen 142 ALLRDYDKTKEEVEELRKEIKELERKVEILEMRIKQ 177 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 244
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=31.80 E-value=6.7e+02 Score=26.86 Aligned_cols=198 Identities=20% Similarity=0.284 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHH
Q 011758 151 LETEREKYTSVFSELA-AAKQELRKIHQDCNSTLEAKVTAFNLAAAAENSAKANMERVSELSKEISTVQESIGQVKLATM 229 (478)
Q Consensus 151 Le~~~~q~~~~~~eL~-s~k~EL~kl~~el~~~~e~k~~A~~~aeea~~~~~~~~~~ve~L~~El~~~Ke~l~~~~~a~~ 229 (478)
+..+.+.|...+-+|. .-..||++|+++-+.++.+..+|---|=+|+..+-. ++|..|+...+ ++.+
T Consensus 343 fAaMEetHQkkiEdLQRqHqRELekLreEKdrLLAEETAATiSAIEAMKnAhr-----EEmeRELeKsq-Svns------ 410 (593)
T KOG4807|consen 343 FAAMEETHQKKIEDLQRQHQRELEKLREEKDRLLAEETAATISAIEAMKNAHR-----EEMERELEKSQ-SVNS------ 410 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHH-----HHHHHHHHhhh-cccc------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhcccchHHH
Q 011758 230 QAQQEQAKVFAEKDLQRQSYKATLEESAKKLLALRNQFDPQLTQNLET-----QLTETMSEIAALQKQLENAKASDLDSV 304 (478)
Q Consensus 230 ~Aee~~~~~~~~~~~~~~~~~~~lee~~~~l~~L~~e~~~el~k~LE~-----kL~~~~~ei~~Lq~el~~~~~~~~~~v 304 (478)
.-+.-+-.|..++...+.+|+.|-.+|. .|.||+ .|.+-..-+-.-|.+-..+..-.+.--
T Consensus 411 -----------dveaLRrQyleelqsvqRELeVLSEQYS---QKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELn 476 (593)
T KOG4807|consen 411 -----------DVEALRRQYLEELQSVQRELEVLSEQYS---QKCLENAHLAQALEAERQALRQCQRENQELNAHNQELN 476 (593)
T ss_pred -----------ChHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHh------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HH
Q 011758 305 RIVTSELDDAKGS------------------------LQKVAEEESSLRNLVESLKVELENVKKEHS-----------EL 349 (478)
Q Consensus 305 ~~~~~ELee~k~~------------------------L~~a~~E~~~l~~~v~sLr~ELe~~k~el~-----------~l 349 (478)
.++..|+...... |-.-..|+.-|+..|.+|+.||...-.... +|
T Consensus 477 nRLaaEItrLRtlltgdGgGtGsplaqgkdayELEVLLRVKEsEiQYLKqEissLkDELQtalrDKkyaSdKYkDiYtEL 556 (593)
T KOG4807|consen 477 NRLAAEITRLRTLLTGDGGGTGSPLAQGKDAYELEVLLRVKESEIQYLKQEISSLKDELQTALRDKKYASDKYKDIYTEL 556 (593)
T ss_pred hHHHHHHHHHHHHhccCCCCCCCccccCcchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHH
Q ss_pred HHHHhhhHHHHhhHHHHHHHhHHHH
Q 011758 350 KEKEAETESIAGNLHVLLQKTKSEL 374 (478)
Q Consensus 350 ~~~e~~a~~~v~~L~~EL~k~k~EL 374 (478)
-.....+.--|..|++.|.-...-|
T Consensus 557 SiaKakadcdIsrLKEqLkaAteAL 581 (593)
T KOG4807|consen 557 SIAKAKADCDISRLKEQLKAATEAL 581 (593)
T ss_pred HHHHHhhhccHHHHHHHHHHHHHHh
No 245
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=31.68 E-value=4.9e+02 Score=25.32 Aligned_cols=32 Identities=34% Similarity=0.424 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011758 324 EESSLRNLVESLKVELENVKKEHSELKEKEAE 355 (478)
Q Consensus 324 E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~ 355 (478)
+.+++......++.+.+..-..+..+-.....
T Consensus 54 e~gsl~~aw~~i~~e~e~~a~~H~~la~~L~~ 85 (239)
T cd07647 54 EIGTLKSSWDSLRKETENVANAHIQLAQSLRE 85 (239)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777776666666554433
No 246
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=31.61 E-value=5e+02 Score=25.37 Aligned_cols=25 Identities=36% Similarity=0.379 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 323 EEESSLRNLVESLKVELENVKKEHS 347 (478)
Q Consensus 323 ~E~~~l~~~v~sLr~ELe~~k~el~ 347 (478)
.|-.-++...+.|+++|+++|..+.
T Consensus 116 sEF~~lr~e~EklkndlEk~ks~lr 140 (220)
T KOG3156|consen 116 SEFANLRAENEKLKNDLEKLKSSLR 140 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555578888888888888887766
No 247
>PHA03011 hypothetical protein; Provisional
Probab=31.54 E-value=3.4e+02 Score=23.37 Aligned_cols=57 Identities=21% Similarity=0.163 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 011758 166 AAAKQELRKIHQDCNSTLEAKVTAFNLAAAAENSAKANMERVSELSKEISTVQESIG 222 (478)
Q Consensus 166 ~s~k~EL~kl~~el~~~~e~k~~A~~~aeea~~~~~~~~~~ve~L~~El~~~Ke~l~ 222 (478)
...++.+..|..+|..+.++=+--.+....-....+++-..+--|+.++.++|+-+.
T Consensus 60 Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~nia 116 (120)
T PHA03011 60 NAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIA 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHh
Confidence 355666777777777777777777777777778888899999999999999998763
No 248
>PF15294 Leu_zip: Leucine zipper
Probab=31.11 E-value=5.8e+02 Score=25.95 Aligned_cols=49 Identities=24% Similarity=0.262 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011758 415 KAMELKEEAGATKIALEEAEKKLRAALEEAEEAKGAETRALDRLRRCLRE 464 (478)
Q Consensus 415 el~~~keE~E~akaei~~~E~rL~a~~kE~eaakasE~~Al~~l~~l~e~ 464 (478)
.+..+....--++..+-.....|..+-+|.+. |-.+.-+.-.|+.+.-.
T Consensus 216 ~~k~L~e~L~~~KhelL~~QeqL~~aekeLek-KfqqT~ay~NMk~~ltk 264 (278)
T PF15294_consen 216 QQKALEETLQSCKHELLRVQEQLSLAEKELEK-KFQQTAAYRNMKEILTK 264 (278)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhcchhhHHH-HhCccHHHHHhHHHHHh
Confidence 33444444444455555444455555555554 44555555566555433
No 249
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=30.96 E-value=5.6e+02 Score=25.74 Aligned_cols=94 Identities=24% Similarity=0.144 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 011758 61 AKETQLHLAQRELNKLKDQLKNAEDTKAQAFVELEKAKRTVEDLSHKLKVVIESKESAIKVTEAAKIQAKQIEESNCSNP 140 (478)
Q Consensus 61 ~~e~ql~~~qeel~k~k~ql~~aE~~k~~a~~EL~~ak~~~eeL~~kLe~a~~e~~~a~e~~e~~k~r~~Ele~~~~~~~ 140 (478)
..+.++..++..+..+..++...+........++..++..++....++..++..- .|++.|-+.+
T Consensus 77 ~~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~-----------~r~~~L~~~g---- 141 (334)
T TIGR00998 77 NAELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDL-----------RRRVPLFKKG---- 141 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----------HHHHHHHHCC----
Confidence 3445666667666666666666555555555555555555544444444433111 1344442221
Q ss_pred CCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011758 141 SGSDGARNQDLETEREKYTSVFSELAAAKQELR 173 (478)
Q Consensus 141 ~~~~~a~k~eLe~~~~q~~~~~~eL~s~k~EL~ 173 (478)
..-+.+++.++..|....++|..++.+..
T Consensus 142 ----~is~~~~~~a~~~~~~a~~~l~~~~~~~~ 170 (334)
T TIGR00998 142 ----LISREELDHARKALLSAKAALNAAIQEQL 170 (334)
T ss_pred ----CcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22356777777777777777777666533
No 250
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=30.78 E-value=3.1e+02 Score=24.05 Aligned_cols=52 Identities=23% Similarity=0.273 Sum_probs=32.1
Q ss_pred hhhHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 58 RVLAKETQLHLAQ--------RELNKLKDQLKNAEDTKAQAFVELEKAKRTVEDLSHKLK 109 (478)
Q Consensus 58 ~~~~~e~ql~~~q--------eel~k~k~ql~~aE~~k~~a~~EL~~ak~~~eeL~~kLe 109 (478)
|+.+++.+|.+++ -+|.+|++.-...=..+.-.-..|.++...+.+.+.+|-
T Consensus 8 rIkdLeselsk~Ktsq~d~~~~eLEkYkqly~eElk~r~SLs~kL~ktnerLaevstkLl 67 (111)
T PF12001_consen 8 RIKDLESELSKMKTSQEDSNKTELEKYKQLYLEELKLRKSLSNKLNKTNERLAEVSTKLL 67 (111)
T ss_pred HHHHHHHHHHHhHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 5666666665554 566677666554444455556677777777777666654
No 251
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=30.11 E-value=6.1e+02 Score=25.84 Aligned_cols=79 Identities=24% Similarity=0.229 Sum_probs=52.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHHHHhhhHH
Q 011758 311 LDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEAKIRGASE 389 (478)
Q Consensus 311 Lee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eeka~~~~~ 389 (478)
|.--+...+..+.+...|...--+|....+++......+....+.-...|.-|+..|+.++..|+.+...-...+..++
T Consensus 48 LqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELE 126 (307)
T PF10481_consen 48 LQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELE 126 (307)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333555556666666666666666666666666666666666667788888999888888877776544444443333
No 252
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=29.80 E-value=3.4e+02 Score=22.78 Aligned_cols=31 Identities=13% Similarity=0.133 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 317 SLQKVAEEESSLRNLVESLKVELENVKKEHS 347 (478)
Q Consensus 317 ~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~ 347 (478)
.+.++..+.+..+..+++|..|+..++.-+.
T Consensus 39 Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~ 69 (96)
T PF08647_consen 39 EKAKADQKYFAAMRSKDALDNEMKKLNTQLS 69 (96)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3444555666667777777777666665544
No 253
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=29.75 E-value=4.1e+02 Score=23.75 Aligned_cols=37 Identities=14% Similarity=0.474 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 306 IVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENV 342 (478)
Q Consensus 306 ~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~ 342 (478)
..+.++.+++.++..+..++..++..|..|...|..+
T Consensus 86 ~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 86 QIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666666666666666543
No 254
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=29.58 E-value=8.6e+02 Score=27.46 Aligned_cols=73 Identities=15% Similarity=0.177 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 272 TQNLETQLTETMSEIAALQKQLENAKASDLDSVRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEH 346 (478)
Q Consensus 272 ~k~LE~kL~~~~~ei~~Lq~el~~~~~~~~~~v~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el 346 (478)
++.+..++......+..|..+++.+... ..-..|+.-+-+.-.++.+=++|+..+..-...|..|++.+..-|
T Consensus 456 ~k~~~~e~~~Kee~~~qL~~e~e~~~k~--~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL 528 (594)
T PF05667_consen 456 IKEIEEEIRQKEELYKQLVKELEKLPKD--VNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKL 528 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555665556666677777665431 112345555555555555555555555444444444444444333
No 255
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=28.53 E-value=3e+02 Score=22.97 Aligned_cols=41 Identities=17% Similarity=0.240 Sum_probs=16.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 397 QLSLETENARQEAEEMKNKAMELKEEAGATKIALEEAEKKL 437 (478)
Q Consensus 397 q~s~Eae~Ak~~a~~~~~el~~~keE~E~akaei~~~E~rL 437 (478)
+++++..........+...+..++..+..++.+...++.||
T Consensus 28 qLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~Ri 68 (85)
T PRK09973 28 QLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRL 68 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333333333333344444444444444444444444
No 256
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=28.50 E-value=3.3e+02 Score=22.28 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=11.1
Q ss_pred hhHHHHHHHhHHHHHH
Q 011758 361 GNLHVLLQKTKSELEA 376 (478)
Q Consensus 361 ~~L~~EL~k~k~ELe~ 376 (478)
..+++|+.+++.+|+.
T Consensus 60 ~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 60 QQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4457777777777764
No 257
>PRK11281 hypothetical protein; Provisional
Probab=28.46 E-value=1.2e+03 Score=28.62 Aligned_cols=8 Identities=13% Similarity=0.165 Sum_probs=3.7
Q ss_pred hhhhhHHH
Q 011758 147 RNQDLETE 154 (478)
Q Consensus 147 ~k~eLe~~ 154 (478)
.+.+|+.+
T Consensus 41 iq~~l~~~ 48 (1113)
T PRK11281 41 VQAQLDAL 48 (1113)
T ss_pred HHHHHHHh
Confidence 44444443
No 258
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=28.34 E-value=6.7e+02 Score=25.80 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011758 248 SYKATLEESAKKLLALR 264 (478)
Q Consensus 248 ~~~~~lee~~~~l~~L~ 264 (478)
.|...|+++..++..+-
T Consensus 52 ~fA~~ld~~~~kl~~Ms 68 (301)
T PF06120_consen 52 EFADSLDELKEKLKEMS 68 (301)
T ss_pred HHHHhhHHHHHHHHhcC
Confidence 55555555555444443
No 259
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=27.96 E-value=6.6e+02 Score=25.62 Aligned_cols=32 Identities=13% Similarity=0.080 Sum_probs=21.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 147 RNQDLETEREKYTSVFSELAAAKQELRKIHQD 178 (478)
Q Consensus 147 ~k~eLe~~~~q~~~~~~eL~s~k~EL~kl~~e 178 (478)
-+.+++.++..|..+-.+|..++.++..+...
T Consensus 150 S~~~~~~a~~~~~~a~~~l~~a~~~~~~~~~~ 181 (346)
T PRK10476 150 SAQQVDQARTAQRDAEVSLNQALLQAQAAAAA 181 (346)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777776666655443
No 260
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=27.81 E-value=3.7e+02 Score=22.59 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 325 ESSLRNLVESLKVELENVKKEHSELKE 351 (478)
Q Consensus 325 ~~~l~~~v~sLr~ELe~~k~el~~l~~ 351 (478)
...+...+..++.++......+..+..
T Consensus 69 ~~~l~~e~~~lk~~i~~le~~~~~~e~ 95 (108)
T PF02403_consen 69 AEELKAEVKELKEEIKELEEQLKELEE 95 (108)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433
No 261
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.75 E-value=2.6e+02 Score=29.23 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=11.0
Q ss_pred HHHhhHHHHHHHhHHHHHHhHHHHH
Q 011758 358 SIAGNLHVLLQKTKSELEACVVEEA 382 (478)
Q Consensus 358 ~~v~~L~~EL~k~k~ELe~~~~~Ee 382 (478)
..++.|+.++..+...++-+..+..
T Consensus 253 ~~~etLEqq~~~L~~niDIL~~k~~ 277 (365)
T KOG2391|consen 253 AMKETLEQQLQSLQKNIDILKSKVR 277 (365)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3334444444444444444444433
No 262
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=27.03 E-value=6.3e+02 Score=25.06 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011758 435 KKLRAALEEAEEAKGAETRALDRLRRCLRE 464 (478)
Q Consensus 435 ~rL~a~~kE~eaakasE~~Al~~l~~l~e~ 464 (478)
.++..+...+-.+|..=..||..|..+++.
T Consensus 191 ~~v~~Le~~v~~aK~~Y~~ALrnLE~ISee 220 (239)
T PF05276_consen 191 EKVEELEAKVKQAKSRYSEALRNLEQISEE 220 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455556666667777777777654
No 263
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=26.56 E-value=8.2e+02 Score=26.21 Aligned_cols=170 Identities=8% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHhHHhhHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Q 011758 215 STVQESIGQVKLATMQAQQEQAKVFAEKDLQ------------------RQSYKATLEESAKKLLALRNQFDPQLTQNLE 276 (478)
Q Consensus 215 ~~~Ke~l~~~~~a~~~Aee~~~~~~~~~~~~------------------~~~~~~~lee~~~~l~~L~~e~~~el~k~LE 276 (478)
..+...+..++.....+..+.....+..+.. ...|..+.......+...+..+. .....+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~rL~a~~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~-~~~~~~~ 171 (457)
T TIGR01000 93 GNEENQKQLLEQQLDNLKDQKKSLDTLKQSIENGRNQFPTDDSFGYRNLFNGYLAQVESLTSETQQQNDKSQ-TQNEAAE 171 (457)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhhhhH-HHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH------------HHHHhHHHHHH----------HHHHHHHHHHH
Q 011758 277 TQLTETMSEIAALQKQLENAKASDLDSVRIVTSELD------------DAKGSLQKVAE----------EESSLRNLVES 334 (478)
Q Consensus 277 ~kL~~~~~ei~~Lq~el~~~~~~~~~~v~~~~~ELe------------e~k~~L~~a~~----------E~~~l~~~v~s 334 (478)
+.+......+..++.++..+. .....+...+. .+...+..... ....+...+..
T Consensus 172 ~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 247 (457)
T TIGR01000 172 KTKAQLDQQISKTDQKLQDYQ----ALKNAISNGTKVANFNPYQSLYENYQAQLKSASDKDQKNQVKSTILATIQQQIDQ 247 (457)
T ss_pred hhHHHHHHHHHHHHHHHHHHH----HHHHHHhcCCCCCCCccHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH-------------HHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHHHHhhhHH
Q 011758 335 LKVELENVKKEHSEL-------------KEKEAETESIAGNLHVLLQKTKSELEACVVEEAKIRGASE 389 (478)
Q Consensus 335 Lr~ELe~~k~el~~l-------------~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eeka~~~~~ 389 (478)
|+.++...+..+..+ ......-.........++..++.++..++..-..++....
T Consensus 248 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~ 315 (457)
T TIGR01000 248 LQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKEDSQ 315 (457)
T ss_pred HHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 264
>PRK11519 tyrosine kinase; Provisional
Probab=26.51 E-value=1e+03 Score=27.30 Aligned_cols=15 Identities=13% Similarity=0.372 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 011758 334 SLKVELENVKKEHSE 348 (478)
Q Consensus 334 sLr~ELe~~k~el~~ 348 (478)
.++.++..+...+..
T Consensus 315 ~l~~ql~~l~~~~~~ 329 (719)
T PRK11519 315 NIDAQLNELTFKEAE 329 (719)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444443333333
No 265
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=26.49 E-value=7.7e+02 Score=25.88 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=23.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 147 RNQDLETEREKYTSVFSELAAAKQELRKIHQDC 179 (478)
Q Consensus 147 ~k~eLe~~~~q~~~~~~eL~s~k~EL~kl~~el 179 (478)
-+.+++.++..|..+-+.+..++..+...+..+
T Consensus 156 S~~~ld~a~~~~~~a~a~l~~a~~~l~~~~~~~ 188 (390)
T PRK15136 156 GREELQHARDAVASAQAQLDVAIQQYNANQAMI 188 (390)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788888888777777777777766655443
No 266
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=26.48 E-value=2.4e+02 Score=24.07 Aligned_cols=42 Identities=29% Similarity=0.312 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 58 RVLAKETQLHLAQRELNKLKDQLKNAEDTKAQAFVELEKAKR 99 (478)
Q Consensus 58 ~~~~~e~ql~~~qeel~k~k~ql~~aE~~k~~a~~EL~~ak~ 99 (478)
+..++.-||..+.+|..-+.+.+...+....++..||.+.|-
T Consensus 2 ~~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~ 43 (96)
T PF11365_consen 2 DSAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKS 43 (96)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677788888888888888888888877777777776654
No 267
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=26.44 E-value=4.4e+02 Score=23.06 Aligned_cols=69 Identities=20% Similarity=0.314 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHhHHH
Q 011758 252 TLEESAKKLLALRNQFD-PQLTQNLETQLTETMSEIAALQKQLENAKA-SDLDSVRIVTSELDDAKGSLQK 320 (478)
Q Consensus 252 ~lee~~~~l~~L~~e~~-~el~k~LE~kL~~~~~ei~~Lq~el~~~~~-~~~~~v~~~~~ELee~k~~L~~ 320 (478)
....++.-|..++..+. ..+..+...++.+...+|...+.+|..+.. ++.+.+.....-|.+++..|..
T Consensus 44 rv~GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~G~~~KI~K~~~KL~ea~~eL~~ 114 (115)
T PF06476_consen 44 RVAGLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELKEAQAKGDSDKIAKRQKKLAEAKAELKE 114 (115)
T ss_pred HHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh
Confidence 34444455555555543 357777777777777777777777776654 3456666666667777766653
No 268
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=26.42 E-value=1.2e+03 Score=28.14 Aligned_cols=123 Identities=14% Similarity=0.135 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 011758 67 HLAQRELNKLKDQLKNAEDTKAQAFVELEKAKRTVEDLSHKLKVV---IESKESAIKVTEAAKIQAKQIEESNCSNPSGS 143 (478)
Q Consensus 67 ~~~qeel~k~k~ql~~aE~~k~~a~~EL~~ak~~~eeL~~kLe~a---~~e~~~a~e~~e~~k~r~~Ele~~~~~~~~~~ 143 (478)
..+..+|.-++..+......--.-+.|--.+++-++++..--+.+ -.-=+-+.-|++..+-|+.+|++...-.. ..
T Consensus 201 l~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlmDs~fykdRveelkedN~vLl-ee 279 (1195)
T KOG4643|consen 201 LRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLL-EE 279 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHH-HH
Confidence 334444444444443333333344555555555555544333322 21222235577778888888876421100 00
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 011758 144 DGARNQDLETEREKYTSVFSELAAAKQELRKIHQDCNSTLEAKVTAFNLAAA 195 (478)
Q Consensus 144 ~~a~k~eLe~~~~q~~~~~~eL~s~k~EL~kl~~el~~~~e~k~~A~~~aee 195 (478)
..=++.+|..-+.|- +=...-.+|-+++++++.+...++.--.+.++
T Consensus 280 keMLeeQLq~lrars-----e~~tleseiiqlkqkl~dm~~erdtdr~ktee 326 (1195)
T KOG4643|consen 280 KEMLEEQLQKLRARS-----EGATLESEIIQLKQKLDDMRSERDTDRHKTEE 326 (1195)
T ss_pred HHHHHHHHHHHHhcc-----ccCChHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 011222333322222 11233445666666666666655555444444
No 269
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=26.28 E-value=6.3e+02 Score=24.80 Aligned_cols=45 Identities=20% Similarity=0.100 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHH
Q 011758 325 ESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQK 369 (478)
Q Consensus 325 ~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k 369 (478)
.+++......++.+++.+-..+..+-++.......+..+...+.+
T Consensus 55 ~gt~~~~w~~i~~~~e~~a~~H~~l~~~L~~~~~~l~~~~~~~~k 99 (261)
T cd07648 55 LGTFAPLWLVLRVSTEKLSELHLQLVQKLQELIKDVQKYGEEQHK 99 (261)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555544443333333333333333
No 270
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=26.05 E-value=6.1e+02 Score=24.55 Aligned_cols=13 Identities=31% Similarity=0.514 Sum_probs=5.2
Q ss_pred HHHHHHHHHHhcc
Q 011758 255 ESAKKLLALRNQF 267 (478)
Q Consensus 255 e~~~~l~~L~~e~ 267 (478)
.++++|...+..|
T Consensus 116 ~S~~kL~~tr~~Y 128 (201)
T PF11172_consen 116 ASEQKLAETRRRY 128 (201)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444433
No 271
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=25.24 E-value=1.1e+03 Score=27.14 Aligned_cols=6 Identities=33% Similarity=0.379 Sum_probs=3.1
Q ss_pred CCCCCC
Q 011758 1 MVAKGR 6 (478)
Q Consensus 1 ~~~~~~ 6 (478)
|.+|+-
T Consensus 1 ~~~~~~ 6 (726)
T PRK09841 1 MTTKNM 6 (726)
T ss_pred CCcccc
Confidence 556643
No 272
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=24.52 E-value=1.1e+03 Score=26.77 Aligned_cols=59 Identities=24% Similarity=0.278 Sum_probs=50.0
Q ss_pred HhhhHHHHhhHHHHHHHhHHHHHHhHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHH
Q 011758 353 EAETESIAGNLHVLLQKTKSELEACVVEEAKIRGASEEMISSLHQLSLETENARQEAEE 411 (478)
Q Consensus 353 e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eeka~~~~~~L~~~Lqq~s~Eae~Ak~~a~~ 411 (478)
.+..=.+|..|.-|-.-++.||++++..-.|....+-.+...|..+.+++..|++++..
T Consensus 324 KNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~ 382 (832)
T KOG2077|consen 324 KNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKD 382 (832)
T ss_pred HHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34455678889999999999999999988888888888899999999999999887654
No 273
>PF15249 GLTSCR1: Glioma tumor suppressor candidate region
Probab=24.19 E-value=44 Score=28.85 Aligned_cols=17 Identities=41% Similarity=0.636 Sum_probs=14.7
Q ss_pred ccCCCCchhhHHHHhhh
Q 011758 20 IDTSAPFQSVKDAVTLF 36 (478)
Q Consensus 20 idt~~p~~SVk~Avs~F 36 (478)
.|+..||.|+.+||.+-
T Consensus 15 PD~~tPF~s~~DA~~RL 31 (109)
T PF15249_consen 15 PDYKTPFRSLEDAVERL 31 (109)
T ss_pred CCcCCCCCCHHHHHHHh
Confidence 48888999999999864
No 274
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=24.08 E-value=9.9e+02 Score=26.31 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 64 TQLHLAQRELNKLKDQLKNAEDTKAQAFVELEKAKRTVEDLSHKLKVV 111 (478)
Q Consensus 64 ~ql~~~qeel~k~k~ql~~aE~~k~~a~~EL~~ak~~~eeL~~kLe~a 111 (478)
++++.++..+.++-++...|+.- .+....|++-.|.+..=..+++.+
T Consensus 271 ~~i~~lk~~n~~l~e~i~ea~k~-s~~i~~l~ek~r~l~~D~nk~~~~ 317 (622)
T COG5185 271 TDIANLKTQNDNLYEKIQEAMKI-SQKIKTLREKWRALKSDSNKYENY 317 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHHHHHH
Confidence 45666666666666666665542 455666666666655544444444
No 275
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=23.56 E-value=1.2e+03 Score=27.16 Aligned_cols=12 Identities=33% Similarity=0.617 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 011758 403 ENARQEAEEMKN 414 (478)
Q Consensus 403 e~Ak~~a~~~~~ 414 (478)
+.|+.++..+-.
T Consensus 580 ~~a~~~~~~~i~ 591 (782)
T PRK00409 580 KEAKKEADEIIK 591 (782)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 276
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=22.97 E-value=7.8e+02 Score=27.72 Aligned_cols=65 Identities=20% Similarity=0.197 Sum_probs=37.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 390 EMISSLHQLSLETENARQEAEEMKNKAMELKEEAGATKIALEEAEKKLRAALEEAEEAKGAETRA 454 (478)
Q Consensus 390 ~L~~~Lqq~s~Eae~Ak~~a~~~~~el~~~keE~E~akaei~~~E~rL~a~~kE~eaakasE~~A 454 (478)
++-..+.-++-|+.+...+...+..++.++...+|..|..|......|.++.-++++|..+-+.+
T Consensus 83 e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 83 EQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Confidence 34444445555555555555555566666666666666666666666666666666665444333
No 277
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=22.85 E-value=5.4e+02 Score=22.77 Aligned_cols=56 Identities=21% Similarity=0.312 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 011758 77 KDQLKNAEDTKAQAFVELEKAKRTVEDLSHKLKVVIESKESAIKVTEAAKIQAKQIEESNCSNP 140 (478)
Q Consensus 77 k~ql~~aE~~k~~a~~EL~~ak~~~eeL~~kLe~a~~e~~~a~e~~e~~k~r~~Ele~~~~~~~ 140 (478)
+.+...=+..+.++..+...++..+.+|+..|..++..+.+-. .|..|-..+...+
T Consensus 73 ~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k~--------eyd~La~~I~~~p 128 (139)
T PF05615_consen 73 KRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNKE--------EYDALAKKINSQP 128 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhcCC
Confidence 3445555677788999999999999999999999998877776 5666655555543
No 278
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=22.68 E-value=1.3e+03 Score=27.07 Aligned_cols=159 Identities=18% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-
Q 011758 272 TQNLETQLTETMSEIAALQKQLENAKASDLDSVRIVTSELDDAKGSLQKVAEEESS---LRNLVESLKVELENVKKEHS- 347 (478)
Q Consensus 272 ~k~LE~kL~~~~~ei~~Lq~el~~~~~~~~~~v~~~~~ELee~k~~L~~a~~E~~~---l~~~v~sLr~ELe~~k~el~- 347 (478)
.|+|-.+|...-.+.+. -.+.++-.|++..=.-|=.+..-.+. +--++--||+|--+++.-|.
T Consensus 339 ~KYLLgELkaLVaeq~D-------------sE~qRLitEvE~cislLPav~g~tniq~EIALA~QplrsENaqLrRrLri 405 (861)
T PF15254_consen 339 LKYLLGELKALVAEQED-------------SEVQRLITEVEACISLLPAVSGSTNIQVEIALAMQPLRSENAQLRRRLRI 405 (861)
T ss_pred HHHHHHHHHHHHhccch-------------HHHHHHHHHHHHHHHhhhhhhccccchhhhHhhhhhhhhhhHHHHHHHHH
Q ss_pred ---HHHHHHhhh---------------HHHHhhHHHHHHHhHHHHHHhHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHH
Q 011758 348 ---ELKEKEAET---------------ESIAGNLHVLLQKTKSELEACVVEEAKIRGASEEMISSLHQLSLETENARQEA 409 (478)
Q Consensus 348 ---~l~~~e~~a---------------~~~v~~L~~EL~k~k~ELe~~~~~Eeka~~~~~~L~~~Lqq~s~Eae~Ak~~a 409 (478)
+|+++++.- .+.--.|...|+.....++.++.+-++..+.++++...=+++.....+-..+.
T Consensus 406 lnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l 485 (861)
T PF15254_consen 406 LNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQEL 485 (861)
T ss_pred HHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 410 EEMKN----KAMELKEEAGATKIALEEAEKKLRAALEE 443 (478)
Q Consensus 410 ~~~~~----el~~~keE~E~akaei~~~E~rL~a~~kE 443 (478)
..-+. +..+++-|.+++...+.....+|.++-+|
T Consensus 486 ~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekE 523 (861)
T PF15254_consen 486 LENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKE 523 (861)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhh
No 279
>PTZ00464 SNF-7-like protein; Provisional
Probab=22.39 E-value=7.2e+02 Score=24.10 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=11.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 011758 58 RVLAKETQLHLAQRELNKLKDQL 80 (478)
Q Consensus 58 ~~~~~e~ql~~~qeel~k~k~ql 80 (478)
|...++..+..+..++.+|++++
T Consensus 26 r~~~l~kKi~~ld~E~~~ak~~~ 48 (211)
T PTZ00464 26 RSEVVDARINKIDAELMKLKEQI 48 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555554
No 280
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.06 E-value=6.5e+02 Score=23.49 Aligned_cols=72 Identities=21% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHhHHHHHHhHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 359 IAGNLHVLLQKTKSELEACVVEEAKIRGASEEMISSLHQLSLETENARQEAEEMKNKAMELKEEAGATKIALEEAEKKLR 438 (478)
Q Consensus 359 ~v~~L~~EL~k~k~ELe~~~~~Eeka~~~~~~L~~~Lqq~s~Eae~Ak~~a~~~~~el~~~keE~E~akaei~~~E~rL~ 438 (478)
++..+-.++.+.+..+++.....+......... .+........++.+++.|++.+..+++.+..+..
T Consensus 119 r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~-------------~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~ 185 (192)
T PF05529_consen 119 RVHSLIKELIKLEEKLEALKKQAESASEAAEKL-------------LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSE 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-------------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q 011758 439 AALEE 443 (478)
Q Consensus 439 a~~kE 443 (478)
...+|
T Consensus 186 ~l~~e 190 (192)
T PF05529_consen 186 GLQKE 190 (192)
T ss_pred HHHhh
No 281
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=21.60 E-value=4.3e+02 Score=21.23 Aligned_cols=38 Identities=16% Similarity=0.228 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011758 152 ETEREKYTSVFSELAAAKQELRKIHQDCNSTLEAKVTA 189 (478)
Q Consensus 152 e~~~~q~~~~~~eL~s~k~EL~kl~~el~~~~e~k~~A 189 (478)
...+.++-.++-|....++.|..+++++..++=..++|
T Consensus 11 ~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA 48 (70)
T PF08606_consen 11 STLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAA 48 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34455666666666666666666666666555444443
No 282
>PRK10869 recombination and repair protein; Provisional
Probab=21.59 E-value=1.1e+03 Score=26.09 Aligned_cols=34 Identities=9% Similarity=0.102 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011758 154 EREKYTSVFSELAAAKQELRKIHQDCNSTLEAKV 187 (478)
Q Consensus 154 ~~~q~~~~~~eL~s~k~EL~kl~~el~~~~e~k~ 187 (478)
....|.....++..++.+|..++..........+
T Consensus 155 ~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d 188 (553)
T PRK10869 155 LLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQ 188 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3446777777888888888777766554443333
No 283
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=21.47 E-value=4.6e+02 Score=21.54 Aligned_cols=50 Identities=14% Similarity=0.213 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhH
Q 011758 329 RNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACV 378 (478)
Q Consensus 329 ~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~ 378 (478)
-..+.-|+.|++.+|..-..+.+.-..+.+.-..|..+-.+++.+...-+
T Consensus 17 vdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wq 66 (79)
T PRK15422 17 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34556677778888877777777766777777778888888888877664
No 284
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.40 E-value=4.4e+02 Score=21.22 Aligned_cols=51 Identities=16% Similarity=0.213 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHH
Q 011758 329 RNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVV 379 (478)
Q Consensus 329 ~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~ 379 (478)
-..+.-|..|++.+|.....|.+....+......|..+-+.++.+...-+.
T Consensus 17 vdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQe 67 (79)
T COG3074 17 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQE 67 (79)
T ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888888888888888877778888888888888887766553
No 285
>PF15294 Leu_zip: Leucine zipper
Probab=21.39 E-value=8.7e+02 Score=24.70 Aligned_cols=107 Identities=16% Similarity=0.276 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHH
Q 011758 162 FSELAAAKQELRKIHQDCNSTLEAKVTAFNLAAAAENSA---------KANMERVSELSKEISTVQESIGQVKLATMQAQ 232 (478)
Q Consensus 162 ~~eL~s~k~EL~kl~~el~~~~e~k~~A~~~aeea~~~~---------~~~~~~ve~L~~El~~~Ke~l~~~~~a~~~Ae 232 (478)
-.|..+.+.-|..+...+..++++|...-.+..+..... -.....+.+|...+..+|..++........
T Consensus 138 q~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~~~d~~~-- 215 (278)
T PF15294_consen 138 QEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKALQDKES-- 215 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHH--
Confidence 344455555555556666666666655554444433311 123334444555555555444332111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Q 011758 233 QEQAKVFAEKDLQRQSYKATLEESAKKLLALRNQFDPQLTQNLETQLTETM 283 (478)
Q Consensus 233 e~~~~~~~~~~~~~~~~~~~lee~~~~l~~L~~e~~~el~k~LE~kL~~~~ 283 (478)
.....+..|..++..|..+..++. -.-+.|+.++.++.
T Consensus 216 ------------~~k~L~e~L~~~KhelL~~QeqL~-~aekeLekKfqqT~ 253 (278)
T PF15294_consen 216 ------------QQKALEETLQSCKHELLRVQEQLS-LAEKELEKKFQQTA 253 (278)
T ss_pred ------------HHHHHHHHHHHHHHHHHhcchhhh-cchhhHHHHhCccH
Confidence 111333344444455555555544 24556666655543
No 286
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=21.20 E-value=1.2e+03 Score=26.20 Aligned_cols=41 Identities=17% Similarity=0.314 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Q 011758 247 QSYKATLEESAKKLLALRNQFDPQLTQNLETQLTETMSEIAA 288 (478)
Q Consensus 247 ~~~~~~lee~~~~l~~L~~e~~~el~k~LE~kL~~~~~ei~~ 288 (478)
.....+++.+.+++-.++.++. ...+.++.++.+..+.+..
T Consensus 349 ~~i~~~~d~l~k~vw~~~l~~~-~~f~~le~~~~~~~~l~~~ 389 (581)
T KOG0995|consen 349 NKIQSELDRLSKEVWELKLEIE-DFFKELEKKFIDLNSLIRR 389 (581)
T ss_pred HHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 3444455555666555555544 3566666666655554433
No 287
>PRK10698 phage shock protein PspA; Provisional
Probab=20.88 E-value=7.8e+02 Score=23.91 Aligned_cols=16 Identities=13% Similarity=0.329 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHhHHh
Q 011758 208 SELSKEISTVQESIGQ 223 (478)
Q Consensus 208 e~L~~El~~~Ke~l~~ 223 (478)
.++...+..++..+..
T Consensus 34 ~em~~~l~~~r~alA~ 49 (222)
T PRK10698 34 QEMEDTLVEVRSTSAR 49 (222)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444433
No 288
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=20.61 E-value=1.4e+03 Score=26.71 Aligned_cols=6 Identities=50% Similarity=0.584 Sum_probs=2.2
Q ss_pred HHHHHH
Q 011758 420 KEEAGA 425 (478)
Q Consensus 420 keE~E~ 425 (478)
+.++++
T Consensus 583 ~~~~~~ 588 (782)
T PRK00409 583 KKEADE 588 (782)
T ss_pred HHHHHH
Confidence 333333
No 289
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=20.56 E-value=1.1e+03 Score=25.67 Aligned_cols=91 Identities=13% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHhHHHHHHhHHHHHHHhhhHHHHHHHHHHh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 357 ESIAGNLHVLLQKTKSELEACVVEEAKIRGASEEMISSLHQL-----------SLETENARQEAEEMKNKAMELKEEAGA 425 (478)
Q Consensus 357 ~~~v~~L~~EL~k~k~ELe~~~~~Eeka~~~~~~L~~~Lqq~-----------s~Eae~Ak~~a~~~~~el~~~keE~E~ 425 (478)
+..+..|+.+|..++.++..+.+...-......=|...-... ...+..-......+..++..+....-.
T Consensus 70 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (525)
T TIGR02231 70 PERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDRE 149 (525)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011758 426 TKIALEEAEKKLRAALEEAEEA 447 (478)
Q Consensus 426 akaei~~~E~rL~a~~kE~eaa 447 (478)
+...+..++.++..+.+++.+.
T Consensus 150 ~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 150 AERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
No 290
>PF13514 AAA_27: AAA domain
Probab=20.53 E-value=1.6e+03 Score=27.29 Aligned_cols=144 Identities=14% Similarity=0.110 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCc--hhhhhhhHHHHHHH---HHHHH
Q 011758 89 QAFVELEKAKRTVEDLSHKLKVVIESKESAIKVTEAAKIQAKQIEESNCSNPSGSD--GARNQDLETEREKY---TSVFS 163 (478)
Q Consensus 89 ~a~~EL~~ak~~~eeL~~kLe~a~~e~~~a~e~~e~~k~r~~Ele~~~~~~~~~~~--~a~k~eLe~~~~q~---~~~~~ 163 (478)
+-..++......+..+...+..+......+.............+=.. ++.+.... ..|....+.+...+ ...-.
T Consensus 547 ~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~-~g~p~~p~~~~~Wl~~~~~~~~~~~~~~~~~~ 625 (1111)
T PF13514_consen 547 ERAARLAQLRARLEEARARLARAQARLAAAEAALAALEAAWAALWAA-AGLPLSPAEMRDWLARREAALEAAEELRAARA 625 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555556666666666666655555554444444444443222 12221111 34666655554332 22333
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHH
Q 011758 164 ELAAAKQELRKIHQDCNSTLEA------KVTAFNLAAAAENSAKANMERVSELSKEISTVQESIGQVKLATMQAQQ 233 (478)
Q Consensus 164 eL~s~k~EL~kl~~el~~~~e~------k~~A~~~aeea~~~~~~~~~~ve~L~~El~~~Ke~l~~~~~a~~~Aee 233 (478)
++......+..+...|...+.. -...+..++...............|...+..+...+......+..++.
T Consensus 626 ~~~~~~~~~~~~~~~L~~~l~~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 701 (1111)
T PF13514_consen 626 ELEALRARRAAARAALAAALAALGPAEELAALLEEAEALLEEWEQAAARREQLEEELQQLEQELEEAEAELQEAQE 701 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433321 122233333333333344444444444444444444444444444433
No 291
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=20.46 E-value=7.5e+02 Score=25.70 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=22.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 147 RNQDLETEREKYTSVFSELAAAKQELRKIHQDC 179 (478)
Q Consensus 147 ~k~eLe~~~~q~~~~~~eL~s~k~EL~kl~~el 179 (478)
-+.+++.++.+|..+-+.+.+++..|...+..+
T Consensus 137 S~~~~~~~~~~~~~a~a~~~~a~a~l~~a~~~l 169 (385)
T PRK09578 137 SERDYTEAVADERQAKAAVASAKAELARAQLQL 169 (385)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456777777777777777777776666555544
No 292
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=20.38 E-value=1.1e+03 Score=25.69 Aligned_cols=42 Identities=19% Similarity=0.158 Sum_probs=22.3
Q ss_pred hHHHHhhHHHHHHHhHHHHHHhHHHHHHHhhhHHHHHHHHHH
Q 011758 356 TESIAGNLHVLLQKTKSELEACVVEEAKIRGASEEMISSLHQ 397 (478)
Q Consensus 356 a~~~v~~L~~EL~k~k~ELe~~~~~Eeka~~~~~~L~~~Lqq 397 (478)
...-+.-|...|..+..+|...+....+++..+-+=...+|+
T Consensus 537 t~~a~epL~~~la~lq~~I~d~~e~i~~~r~~IL~Ne~rIqk 578 (583)
T KOG3809|consen 537 TFGASEPLYNILANLQKEINDTKEEISKARGRILNNEKRIQK 578 (583)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 334455666666666666666655555555554443333433
Done!