Query 011758
Match_columns 478
No_of_seqs 170 out of 211
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 14:43:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011758.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011758hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 99.1 1.2E-05 4.2E-10 76.3 43.6 31 150-180 7-37 (284)
2 1c1g_A Tropomyosin; contractIl 98.9 4.6E-05 1.6E-09 72.2 43.4 7 167-173 17-23 (284)
3 1i84_S Smooth muscle myosin he 98.4 1.1E-06 3.7E-11 102.9 11.4 14 418-431 1148-1161(1184)
4 2v71_A Nuclear distribution pr 97.2 0.047 1.6E-06 50.6 20.1 123 245-378 11-150 (189)
5 3na7_A HP0958; flagellar bioge 97.1 0.058 2E-06 52.2 21.1 70 278-351 12-81 (256)
6 3na7_A HP0958; flagellar bioge 96.9 0.28 9.5E-06 47.4 23.4 8 334-341 71-78 (256)
7 3vkg_A Dynein heavy chain, cyt 95.0 3 0.0001 53.3 25.3 20 278-297 1928-1947(3245)
8 2efr_A General control protein 95.0 1.9 6.6E-05 38.5 22.1 93 353-445 37-129 (155)
9 3vkg_A Dynein heavy chain, cyt 94.8 8.8 0.0003 49.2 28.5 73 306-378 2018-2097(3245)
10 2v71_A Nuclear distribution pr 94.8 2.5 8.5E-05 39.0 21.6 71 147-227 15-85 (189)
11 3o0z_A RHO-associated protein 93.5 4.2 0.00014 36.7 19.9 66 315-380 54-119 (168)
12 3o0z_A RHO-associated protein 91.3 8.2 0.00028 34.8 21.3 128 307-434 11-138 (168)
13 2dfs_A Myosin-5A; myosin-V, in 90.9 5.2 0.00018 46.3 17.2 19 329-347 983-1001(1080)
14 3oja_B Anopheles plasmodium-re 88.4 8.7 0.0003 40.7 15.6 40 396-435 540-579 (597)
15 3u1c_A Tropomyosin alpha-1 cha 88.3 9.7 0.00033 31.3 15.0 34 310-343 31-64 (101)
16 1ic2_A Tropomyosin alpha chain 88.0 6.9 0.00024 30.8 11.0 70 390-459 3-72 (81)
17 2efr_A General control protein 87.9 14 0.00049 32.8 23.8 123 304-440 23-145 (155)
18 3oja_B Anopheles plasmodium-re 86.9 7.2 0.00024 41.4 13.9 50 400-449 523-572 (597)
19 2eqb_B RAB guanine nucleotide 85.6 14 0.00047 30.4 13.6 63 146-215 2-64 (97)
20 3swk_A Vimentin; cytoskeleton, 85.0 12 0.00041 29.9 11.0 40 73-112 2-41 (86)
21 3ol1_A Vimentin; structural ge 84.4 18 0.00061 30.6 13.6 51 69-119 18-68 (119)
22 3u59_A Tropomyosin beta chain; 84.4 16 0.00053 30.0 14.7 36 308-343 29-64 (101)
23 3i00_A HIP-I, huntingtin-inter 84.1 5 0.00017 34.3 8.8 49 359-410 16-64 (120)
24 3tnu_A Keratin, type I cytoske 83.2 21 0.00072 30.5 13.2 39 150-188 78-116 (131)
25 3u59_A Tropomyosin beta chain; 82.9 18 0.00062 29.6 15.5 53 388-440 46-98 (101)
26 3tnu_B Keratin, type II cytosk 80.8 25 0.00087 29.9 12.4 39 150-188 76-114 (129)
27 3hnw_A Uncharacterized protein 80.5 17 0.00057 31.7 11.0 37 317-353 83-119 (138)
28 3u1c_A Tropomyosin alpha-1 cha 79.0 25 0.00086 28.8 15.7 51 390-440 48-98 (101)
29 2b9c_A Striated-muscle alpha t 76.4 39 0.0013 29.6 13.6 100 271-370 39-141 (147)
30 2eqb_B RAB guanine nucleotide 74.9 33 0.0011 28.1 13.1 14 418-431 80-93 (97)
31 3i00_A HIP-I, huntingtin-inter 73.3 29 0.00098 29.5 10.1 19 359-377 41-59 (120)
32 2jee_A YIIU; FTSZ, septum, coi 73.1 33 0.0011 27.2 11.0 64 271-352 7-70 (81)
33 3ghg_A Fibrinogen alpha chain; 72.9 24 0.00082 37.2 11.3 59 309-375 96-155 (562)
34 2e7s_A RAB guanine nucleotide 72.3 11 0.00039 32.7 7.4 55 153-214 29-83 (135)
35 1l8d_A DNA double-strand break 72.1 39 0.0013 27.6 11.6 16 282-297 29-44 (112)
36 3tnu_B Keratin, type II cytosk 71.1 47 0.0016 28.2 11.2 32 318-349 31-62 (129)
37 3oja_A Leucine-rich immune mol 70.5 82 0.0028 32.3 15.2 47 400-446 428-474 (487)
38 3tnu_A Keratin, type I cytoske 68.3 44 0.0015 28.5 10.4 32 318-349 33-64 (131)
39 2b9c_A Striated-muscle alpha t 68.1 59 0.002 28.5 11.3 60 385-444 51-110 (147)
40 2ocy_A RAB guanine nucleotide 65.6 73 0.0025 28.2 19.1 22 274-295 17-38 (154)
41 4gkw_A Spindle assembly abnorm 64.5 69 0.0024 27.6 22.5 45 386-430 112-156 (167)
42 2e7s_A RAB guanine nucleotide 62.9 17 0.00058 31.6 6.6 19 418-436 100-118 (135)
43 2fxo_A Myosin heavy chain, car 62.8 71 0.0024 27.1 18.4 42 393-434 83-124 (129)
44 3a7p_A Autophagy protein 16; c 62.1 84 0.0029 27.7 11.6 47 303-349 83-129 (152)
45 1ic2_A Tropomyosin alpha chain 61.3 56 0.0019 25.4 11.3 62 58-119 7-68 (81)
46 2jee_A YIIU; FTSZ, septum, coi 60.2 62 0.0021 25.6 9.8 53 327-379 17-69 (81)
47 2k48_A Nucleoprotein; viral pr 60.0 48 0.0016 27.4 8.4 64 282-349 33-101 (107)
48 1wt6_A Myotonin-protein kinase 58.6 37 0.0013 26.8 7.2 45 334-378 28-72 (81)
49 3mq7_A Bone marrow stromal ant 57.7 86 0.0029 26.4 11.5 39 307-345 30-68 (121)
50 4gkw_A Spindle assembly abnorm 56.3 97 0.0033 26.6 23.5 61 272-350 100-160 (167)
51 2q6q_A Spindle POLE BODY compo 56.2 65 0.0022 24.6 7.9 54 315-368 9-62 (74)
52 3trt_A Vimentin; cytoskeleton, 56.1 65 0.0022 24.6 10.0 27 317-343 50-76 (77)
53 2v66_B Nuclear distribution pr 54.6 94 0.0032 26.0 14.9 95 200-295 5-102 (111)
54 2w83_C C-JUN-amino-terminal ki 53.9 61 0.0021 25.3 7.6 57 310-369 20-76 (77)
55 4h22_A Leucine-rich repeat fli 53.4 94 0.0032 25.6 10.2 60 271-334 17-76 (103)
56 3ghg_A Fibrinogen alpha chain; 53.1 1.3E+02 0.0043 31.8 12.2 37 313-349 114-150 (562)
57 2ic6_A Nucleocapsid protein; h 50.1 72 0.0024 25.0 7.6 64 282-349 3-71 (78)
58 3cl3_D NF-kappa-B essential mo 47.6 37 0.0013 29.0 6.0 99 304-405 4-102 (130)
59 3q8t_A Beclin-1; autophagy, AT 47.2 1.1E+02 0.0038 24.6 14.4 8 366-373 40-47 (96)
60 3mq7_A Bone marrow stromal ant 45.4 1.4E+02 0.0047 25.2 12.4 43 331-373 26-68 (121)
61 1x79_B RAB GTPase binding effe 44.6 1.4E+02 0.0047 25.0 12.9 94 65-183 7-104 (112)
62 3swk_A Vimentin; cytoskeleton, 44.4 1.2E+02 0.004 24.0 10.5 33 413-445 48-80 (86)
63 1l8d_A DNA double-strand break 44.0 1.3E+02 0.0043 24.4 11.3 33 317-349 11-43 (112)
64 2v66_B Nuclear distribution pr 42.0 1.5E+02 0.0052 24.7 14.9 55 323-377 42-96 (111)
65 1wt6_A Myotonin-protein kinase 40.3 1.3E+02 0.0046 23.6 8.7 28 288-319 28-55 (81)
66 3ol1_A Vimentin; structural ge 39.7 1.7E+02 0.0056 24.5 13.6 34 414-447 69-102 (119)
67 3s4r_A Vimentin; alpha-helix, 37.9 1.5E+02 0.0053 23.6 11.0 37 307-343 54-90 (93)
68 2v4h_A NF-kappa-B essential mo 35.7 1.9E+02 0.0065 24.0 11.0 23 324-346 63-85 (110)
69 3m91_A Proteasome-associated A 34.9 99 0.0034 22.2 5.8 36 147-182 14-49 (51)
70 2f1m_A Acriflavine resistance 33.9 2.7E+02 0.0093 25.7 10.8 34 146-179 95-128 (277)
71 2ic9_A Nucleocapsid protein; h 33.1 1.2E+02 0.0042 24.6 6.7 63 283-349 4-71 (96)
72 3s4r_A Vimentin; alpha-helix, 31.8 92 0.0031 25.0 5.9 20 58-77 24-43 (93)
73 1g6u_A Domain swapped dimer; d 31.7 1.2E+02 0.0042 20.6 6.8 39 255-293 4-43 (48)
74 3he5_B Synzip2; heterodimeric 31.5 1.3E+02 0.0044 20.8 6.2 41 334-374 7-47 (52)
75 2i1j_A Moesin; FERM, coiled-co 30.6 82 0.0028 33.6 7.0 34 101-134 337-370 (575)
76 3iv1_A Tumor susceptibility ge 28.8 2.1E+02 0.0071 22.4 9.1 50 329-378 17-66 (78)
77 2b5u_A Colicin E3; high resolu 28.1 5.4E+02 0.019 26.9 19.2 118 326-443 317-439 (551)
78 3jsv_C NF-kappa-B essential mo 27.9 2.4E+02 0.0082 22.8 9.4 27 323-349 40-66 (94)
79 4dk0_A Putative MACA; alpha-ha 27.6 3.1E+02 0.011 26.4 10.3 34 147-180 113-146 (369)
80 2l5g_A GPS2 protein, G protein 25.8 1.1E+02 0.0039 20.4 4.3 26 93-118 9-34 (38)
81 4h22_A Leucine-rich repeat fli 24.5 2.9E+02 0.01 22.6 9.2 65 348-412 6-70 (103)
82 3iox_A AGI/II, PA; alpha helix 24.3 6.3E+02 0.021 26.4 14.4 44 306-349 63-106 (497)
83 3iv1_A Tumor susceptibility ge 24.2 2.6E+02 0.0087 21.8 9.3 22 332-353 48-69 (78)
84 3fpp_A Macrolide-specific effl 24.2 3.5E+02 0.012 25.8 9.9 34 147-180 112-145 (341)
85 1txp_A HnRNP C, heterogeneous 24.0 87 0.003 19.6 3.3 22 165-186 1-22 (28)
86 1jcd_A Major outer membrane li 23.6 2.1E+02 0.0071 20.6 7.6 19 419-437 30-48 (52)
87 3bas_A Myosin heavy chain, str 23.3 2.7E+02 0.0093 21.8 11.2 76 203-287 12-87 (89)
88 2v4h_A NF-kappa-B essential mo 23.2 3.2E+02 0.011 22.7 11.5 31 205-235 62-92 (110)
89 1deq_A Fibrinogen (alpha chain 22.6 6E+02 0.021 25.6 14.2 48 332-379 115-162 (390)
90 2i1j_A Moesin; FERM, coiled-co 22.5 94 0.0032 33.2 5.6 52 412-463 410-461 (575)
91 1use_A VAsp, vasodilator-stimu 22.4 1.2E+02 0.004 21.3 4.1 14 312-325 18-31 (45)
92 4emc_A Monopolin complex subun 22.3 4.4E+02 0.015 23.9 9.5 36 316-351 20-55 (190)
93 2ocy_A RAB guanine nucleotide 22.2 4E+02 0.014 23.4 20.8 37 405-441 99-135 (154)
94 1go4_E MAD1 (mitotic arrest de 21.6 3.3E+02 0.011 22.2 9.5 15 363-377 73-87 (100)
95 1uii_A Geminin; human, DNA rep 20.5 3E+02 0.01 21.7 6.6 36 316-351 39-74 (83)
96 3a7o_A Autophagy protein 16; c 20.2 3E+02 0.01 21.1 8.4 44 328-371 16-59 (75)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.06 E-value=1.2e-05 Score=76.25 Aligned_cols=31 Identities=3% Similarity=0.105 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 150 DLETEREKYTSVFSELAAAKQELRKIHQDCN 180 (478)
Q Consensus 150 eLe~~~~q~~~~~~eL~s~k~EL~kl~~el~ 180 (478)
.+.+.+..+......|..+..++..++..+.
T Consensus 7 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~ 37 (284)
T 1c1g_A 7 KMQMLKLDKENALDRADEAEADKKAAEDRSK 37 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444443
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.92 E-value=4.6e-05 Score=72.22 Aligned_cols=7 Identities=14% Similarity=-0.007 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 011758 167 AAKQELR 173 (478)
Q Consensus 167 s~k~EL~ 173 (478)
.+...+.
T Consensus 17 ~~~~~~~ 23 (284)
T 1c1g_A 17 NALDRAD 23 (284)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.36 E-value=1.1e-06 Score=102.93 Aligned_cols=14 Identities=50% Similarity=0.556 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH
Q 011758 418 ELKEEAGATKIALE 431 (478)
Q Consensus 418 ~~keE~E~akaei~ 431 (478)
.+..+.+.++..|.
T Consensus 1148 ~L~~ele~L~~~Ie 1161 (1184)
T 1i84_S 1148 DLSEELEALKTELE 1161 (1184)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 4
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.23 E-value=0.047 Score=50.55 Aligned_cols=123 Identities=15% Similarity=0.126 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccH--HHHHHHHH----HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhH
Q 011758 245 QRQSYKATLEESAKKLLALRNQFDP--QLTQNLET----QLTETMSEIAALQKQLENAKASDLDSVRIVTSELDDAKGSL 318 (478)
Q Consensus 245 ~~~~~~~~lee~~~~l~~L~~e~~~--el~k~LE~----kL~~~~~ei~~Lq~el~~~~~~~~~~v~~~~~ELee~k~~L 318 (478)
.+.-|+....+....+..++.+|+. +-.+.||. .|..+...+..|+. .+..++.|++..+.++
T Consensus 11 e~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~-----------~~~~L~~E~e~~k~K~ 79 (189)
T 2v71_A 11 ETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQA-----------DNQRLKYEVEALKEKL 79 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence 3457777777777777777777763 34445554 44444444444443 4455666666666666
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhH
Q 011758 319 QKVAEE----ESSLRNLVESLKVELENVKKEH-------SELKEKEAETESIAGNLHVLLQKTKSELEACV 378 (478)
Q Consensus 319 ~~a~~E----~~~l~~~v~sLr~ELe~~k~el-------~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~ 378 (478)
.....+ ++.|...+..|+......+.-+ +.+......+.+++..+...++.+-.....+.
T Consensus 80 ~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE 150 (189)
T 2v71_A 80 EHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLE 150 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 666555 4444444444444444444444 44555566666667777777777666555553
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.15 E-value=0.058 Score=52.24 Aligned_cols=70 Identities=11% Similarity=0.248 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 278 QLTETMSEIAALQKQLENAKASDLDSVRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKE 351 (478)
Q Consensus 278 kL~~~~~ei~~Lq~el~~~~~~~~~~v~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~ 351 (478)
.|...-+.|..|...+..+. ..+..+..++..++..+..+..++..+...+..+..++..++.-+...+.
T Consensus 12 ~LQ~lD~~i~~l~~~~~~lp----~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~ 81 (256)
T 3na7_A 12 EISHLDKEIDSLEPLIREKR----KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQK 81 (256)
T ss_dssp HHHHHHHHHHHTHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554443 34444444444444444444444444444444444444444444444433
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.90 E-value=0.28 Score=47.36 Aligned_cols=8 Identities=0% Similarity=0.210 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 011758 334 SLKVELEN 341 (478)
Q Consensus 334 sLr~ELe~ 341 (478)
.++..+.+
T Consensus 71 ~~~~ri~~ 78 (256)
T 3na7_A 71 DTNAKIAS 78 (256)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.02 E-value=3 Score=53.32 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 011758 278 QLTETMSEIAALQKQLENAK 297 (478)
Q Consensus 278 kL~~~~~ei~~Lq~el~~~~ 297 (478)
||.++...|+.|+.++...+
T Consensus 1928 KL~et~~~V~~l~~~L~~~~ 1947 (3245)
T 3vkg_A 1928 KLRDTEAQVKDLQVSLAQKN 1947 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777777776665543
No 8
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=94.96 E-value=1.9 Score=38.53 Aligned_cols=93 Identities=17% Similarity=0.165 Sum_probs=39.4
Q ss_pred HhhhHHHHhhHHHHHHHhHHHHHHhHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 353 EAETESIAGNLHVLLQKTKSELEACVVEEAKIRGASEEMISSLHQLSLETENARQEAEEMKNKAMELKEEAGATKIALEE 432 (478)
Q Consensus 353 e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eeka~~~~~~L~~~Lqq~s~Eae~Ak~~a~~~~~el~~~keE~E~akaei~~ 432 (478)
-..+.+.+..|..+|..+-.-|-.+...+.++......+...|..++..+..|...++.+...+.++..++..+.-.+..
T Consensus 37 ae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~ 116 (155)
T 2efr_A 37 AELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYA 116 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHH
Q 011758 433 AEKKLRAALEEAE 445 (478)
Q Consensus 433 ~E~rL~a~~kE~e 445 (478)
...++..+..++.
T Consensus 117 ~Kek~~~i~~eLd 129 (155)
T 2efr_A 117 QKLKYKAISEEMK 129 (155)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.79 E-value=8.8 Score=49.24 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhH
Q 011758 306 IVTSELDDAKGSLQKVAEEESSLRNLVESLKVE-------LENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACV 378 (478)
Q Consensus 306 ~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~E-------Le~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~ 378 (478)
.+..+|..++..|..+.+++..+...+..|+.+ -+.++.+......+-..|...|..|..|..|=........
T Consensus 2018 ~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~ 2097 (3245)
T 3vkg_A 2018 QLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFN 2097 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHH
Confidence 333444444444444444444434333333333 3333444444444445555555666665555555444443
No 10
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.78 E-value=2.5 Score=38.98 Aligned_cols=71 Identities=13% Similarity=0.173 Sum_probs=40.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHH
Q 011758 147 RNQDLETEREKYTSVFSELAAAKQELRKIHQDCNSTLEAKVTAFNLAAAAENSAKANMERVSELSKEISTVQESIGQVKL 226 (478)
Q Consensus 147 ~k~eLe~~~~q~~~~~~eL~s~k~EL~kl~~el~~~~e~k~~A~~~aeea~~~~~~~~~~ve~L~~El~~~Ke~l~~~~~ 226 (478)
|+......+.+|..+=.+|.-....-..|..++..-+ +.+.........++..|..++..+|..+...+.
T Consensus 15 wk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL----------~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~ 84 (189)
T 2v71_A 15 WKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQL----------VQAEQRNRDLQADNQRLKYEVEALKEKLEHQYA 84 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666555555555555554322 233444455566666666666666666655443
Q ss_pred H
Q 011758 227 A 227 (478)
Q Consensus 227 a 227 (478)
.
T Consensus 85 e 85 (189)
T 2v71_A 85 Q 85 (189)
T ss_dssp H
T ss_pred H
Confidence 3
No 11
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=93.50 E-value=4.2 Score=36.73 Aligned_cols=66 Identities=15% Similarity=0.115 Sum_probs=46.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHH
Q 011758 315 KGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVE 380 (478)
Q Consensus 315 k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~ 380 (478)
...+......-..|...+..|.+.|+..+....+..+........|..|+.++.+++.-+..+...
T Consensus 54 q~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e 119 (168)
T 3o0z_A 54 QERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGE 119 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444445567777788888888888888888877778888888888888887776665443
No 12
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=91.26 E-value=8.2 Score=34.83 Aligned_cols=128 Identities=13% Similarity=0.180 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHHHHhh
Q 011758 307 VTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEAKIRG 386 (478)
Q Consensus 307 ~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eeka~~ 386 (478)
+.+.|+++...|..-.+-+..++....-+..-+.........|+.+-......-..|..++-.+.+.|+.-+..-.....
T Consensus 11 LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se 90 (168)
T 3o0z_A 11 LQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSE 90 (168)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444334344444444444444444444444444444444444444445555555554444443333344
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 387 ASEEMISSLHQLSLETENARQEAEEMKNKAMELKEEAGATKIALEEAE 434 (478)
Q Consensus 387 ~~~~L~~~Lqq~s~Eae~Ak~~a~~~~~el~~~keE~E~akaei~~~E 434 (478)
...+|...++.+..|++..+.....+..+.+.+.+.+-....+.+.++
T Consensus 91 ~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 91 MIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444555555555556555555555555555555555555444444444
No 13
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.91 E-value=5.2 Score=46.29 Aligned_cols=19 Identities=37% Similarity=0.426 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011758 329 RNLVESLKVELENVKKEHS 347 (478)
Q Consensus 329 ~~~v~sLr~ELe~~k~el~ 347 (478)
...+.+|..++..++.++.
T Consensus 983 ~~~v~~L~~e~~~l~~~~~ 1001 (1080)
T 2dfs_A 983 TNRVLSLQEEIAKLRKELH 1001 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444443333333
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.35 E-value=8.7 Score=40.69 Aligned_cols=40 Identities=18% Similarity=0.299 Sum_probs=18.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 396 HQLSLETENARQEAEEMKNKAMELKEEAGATKIALEEAEK 435 (478)
Q Consensus 396 qq~s~Eae~Ak~~a~~~~~el~~~keE~E~akaei~~~E~ 435 (478)
+++..+.+.-+...+.++..+.+++.|+..+++++...+.
T Consensus 540 ~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 540 EDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444454444444444433
No 15
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=88.27 E-value=9.7 Score=31.33 Aligned_cols=34 Identities=9% Similarity=0.125 Sum_probs=13.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 310 ELDDAKGSLQKVAEEESSLRNLVESLKVELENVK 343 (478)
Q Consensus 310 ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k 343 (478)
.+..+.......-.|+.+|...+..|..+|+.+.
T Consensus 31 ~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~e 64 (101)
T 3u1c_A 31 DKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVL 64 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444444333
No 16
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=88.02 E-value=6.9 Score=30.81 Aligned_cols=70 Identities=21% Similarity=0.281 Sum_probs=50.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 390 EMISSLHQLSLETENARQEAEEMKNKAMELKEEAGATKIALEEAEKKLRAALEEAEEAKGAETRALDRLR 459 (478)
Q Consensus 390 ~L~~~Lqq~s~Eae~Ak~~a~~~~~el~~~keE~E~akaei~~~E~rL~a~~kE~eaakasE~~Al~~l~ 459 (478)
.+...++.+..+.+.|.-.+..+...+........++-.++..+..|++.+-.+++.+...-..|..+|.
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777777777777777777777778888888888877777776655555555544
No 17
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=87.87 E-value=14 Score=32.83 Aligned_cols=123 Identities=14% Similarity=0.100 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHHH
Q 011758 304 VRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEAK 383 (478)
Q Consensus 304 v~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eek 383 (478)
|.++..+|+-+..+++ .....+..|..+|..+-..+-.|...+..++.....+..+|..+...|..+...-+.
T Consensus 23 vaR~E~dLEraEERae-------~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~ 95 (155)
T 2efr_A 23 VARLKKLLERAEERAE-------LSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEF 95 (155)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555544 345566678888888888888899999999999999999999999988887666655
Q ss_pred HhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 384 IRGASEEMISSLHQLSLETENARQEAEEMKNKAMELKEEAGATKIALEEAEKKLRAA 440 (478)
Q Consensus 384 a~~~~~~L~~~Lqq~s~Eae~Ak~~a~~~~~el~~~keE~E~akaei~~~E~rL~a~ 440 (478)
+...+..|...+..+-.++...+.... .+..+..++...+..+...+-.+
T Consensus 96 AERsv~kLEk~id~lEd~L~~~Kek~~-------~i~~eLd~tl~el~~~~~~~~~~ 145 (155)
T 2efr_A 96 AERSVTKLEKSIDDLEDELYAQKLKYK-------AISEEMKQLEDKVEELLSKNYHL 145 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcccchHHH
Confidence 655666666666666666555555544 55556666666666665544433
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.87 E-value=7.2 Score=41.35 Aligned_cols=50 Identities=22% Similarity=0.246 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 400 LETENARQEAEEMKNKAMELKEEAGATKIALEEAEKKLRAALEEAEEAKG 449 (478)
Q Consensus 400 ~Eae~Ak~~a~~~~~el~~~keE~E~akaei~~~E~rL~a~~kE~eaaka 449 (478)
.+....+........+++.++.+.+.....++.+..++..+.+|....++
T Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~ 572 (597)
T 3oja_B 523 RETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQ 572 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 34444444455555666667777777777777777777777777666543
No 19
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=85.61 E-value=14 Score=30.35 Aligned_cols=63 Identities=19% Similarity=0.331 Sum_probs=46.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 146 ARNQDLETEREKYTSVFSELAAAKQELRKIHQDCNSTLEAKVTAFNLAAAAENSAKANMERVSELSKEIS 215 (478)
Q Consensus 146 a~k~eLe~~~~q~~~~~~eL~s~k~EL~kl~~el~~~~e~k~~A~~~aeea~~~~~~~~~~ve~L~~El~ 215 (478)
++..+|+.++.+|..+-.++..+..++.+|..+|..-...+ ..|......+..-+++||..|-
T Consensus 2 ~~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R-------~~aE~~~~~ie~ElEeLTasLF 64 (97)
T 2eqb_B 2 PLGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELR-------TKAEEEADKLNKEVEDLTASLF 64 (97)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999988887544444 3345556667777888877763
No 20
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=84.98 E-value=12 Score=29.90 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 73 LNKLKDQLKNAEDTKAQAFVELEKAKRTVEDLSHKLKVVI 112 (478)
Q Consensus 73 l~k~k~ql~~aE~~k~~a~~EL~~ak~~~eeL~~kLe~a~ 112 (478)
+..++.|+..+-..++++..|+..++-.+++++.|.+.-.
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~ 41 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 41 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888999999999999999999988887654
No 21
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=84.39 E-value=18 Score=30.61 Aligned_cols=51 Identities=24% Similarity=0.310 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 69 AQRELNKLKDQLKNAEDTKAQAFVELEKAKRTVEDLSHKLKVVIESKESAI 119 (478)
Q Consensus 69 ~qeel~k~k~ql~~aE~~k~~a~~EL~~ak~~~eeL~~kLe~a~~e~~~a~ 119 (478)
-...+..++.++...-..++++.-++..++..+++++.+.+.-..-+..+.
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E 68 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAE 68 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456778888999999999999999999999999999999998765554444
No 22
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=84.36 E-value=16 Score=29.95 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=14.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 308 TSELDDAKGSLQKVAEEESSLRNLVESLKVELENVK 343 (478)
Q Consensus 308 ~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k 343 (478)
...+..+.......-.|+.+|...+..|..+++.+.
T Consensus 29 e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~ 64 (101)
T 3u59_A 29 EADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYS 64 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444444444444333
No 23
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=84.14 E-value=5 Score=34.30 Aligned_cols=49 Identities=10% Similarity=0.125 Sum_probs=23.6
Q ss_pred HHhhHHHHHHHhHHHHHHhHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 011758 359 IAGNLHVLLQKTKSELEACVVEEAKIRGASEEMISSLHQLSLETENARQEAE 410 (478)
Q Consensus 359 ~v~~L~~EL~k~k~ELe~~~~~Eeka~~~~~~L~~~Lqq~s~Eae~Ak~~a~ 410 (478)
.|..|.-++..++.+++.++. .++..+..|...+-++..+.+..+....
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~---E~q~~v~ql~~~i~~Le~eL~e~r~~~q 64 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKT---ESQRVVLQLKGHVSELEADLAEQQHLRQ 64 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555432 2344455555555555555555544433
No 24
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=83.16 E-value=21 Score=30.54 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011758 150 DLETEREKYTSVFSELAAAKQELRKIHQDCNSTLEAKVT 188 (478)
Q Consensus 150 eLe~~~~q~~~~~~eL~s~k~EL~kl~~el~~~~e~k~~ 188 (478)
++...+......=.+|..++.++...-.+|..+++-|..
T Consensus 78 ~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~ 116 (131)
T 3tnu_A 78 QLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTR 116 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566667778888899999999999888887743
No 25
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=82.88 E-value=18 Score=29.56 Aligned_cols=53 Identities=11% Similarity=0.198 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 388 SEEMISSLHQLSLETENARQEAEEMKNKAMELKEEAGATKIALEEAEKKLRAA 440 (478)
Q Consensus 388 ~~~L~~~Lqq~s~Eae~Ak~~a~~~~~el~~~keE~E~akaei~~~E~rL~a~ 440 (478)
+..|...++.+..+.+.+...+..+...+.....-...+-+++..+..|++.+
T Consensus 46 i~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqll 98 (101)
T 3u59_A 46 QQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666667777766676666666666666777777777777777654
No 26
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=80.84 E-value=25 Score=29.90 Aligned_cols=39 Identities=21% Similarity=0.394 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011758 150 DLETEREKYTSVFSELAAAKQELRKIHQDCNSTLEAKVT 188 (478)
Q Consensus 150 eLe~~~~q~~~~~~eL~s~k~EL~kl~~el~~~~e~k~~ 188 (478)
++...+......=.+|..++.++...-.+|..+++-|..
T Consensus 76 ~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~ 114 (129)
T 3tnu_B 76 ALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLA 114 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566667778888899999999999888887743
No 27
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=80.47 E-value=17 Score=31.68 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 317 SLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKE 353 (478)
Q Consensus 317 ~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e 353 (478)
.++....|+..|+..+.+++.+++.++.++..++.+.
T Consensus 83 ~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~ 119 (138)
T 3hnw_A 83 DIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEI 119 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444443333
No 28
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=79.03 E-value=25 Score=28.78 Aligned_cols=51 Identities=8% Similarity=0.160 Sum_probs=26.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 390 EMISSLHQLSLETENARQEAEEMKNKAMELKEEAGATKIALEEAEKKLRAA 440 (478)
Q Consensus 390 ~L~~~Lqq~s~Eae~Ak~~a~~~~~el~~~keE~E~akaei~~~E~rL~a~ 440 (478)
.|...++.+..+.+.+......+...+.....-...+-+++..+..|++.+
T Consensus 48 sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 48 QLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555444444444444455555666666665543
No 29
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=76.40 E-value=39 Score=29.62 Aligned_cols=100 Identities=18% Similarity=0.146 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccch---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 271 LTQNLETQLTETMSEIAALQKQLENAKASDL---DSVRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHS 347 (478)
Q Consensus 271 l~k~LE~kL~~~~~ei~~Lq~el~~~~~~~~---~~v~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~ 347 (478)
..+.|++.-......|..|..+++.++..-. ..+..+..-|.-+...|+.+.+-+......+..|..+|..+-..+-
T Consensus 39 ~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlK 118 (147)
T 2b9c_A 39 GMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLK 118 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555444444455555555554442110 1122233333344444555555555566677777777777777777
Q ss_pred HHHHHHhhhHHHHhhHHHHHHHh
Q 011758 348 ELKEKEAETESIAGNLHVLLQKT 370 (478)
Q Consensus 348 ~l~~~e~~a~~~v~~L~~EL~k~ 370 (478)
.|...+..++.....+...+..+
T Consensus 119 sLE~~eekas~rE~~yee~I~~L 141 (147)
T 2b9c_A 119 SLEDKVEELLSKNYHLENEVARL 141 (147)
T ss_dssp HHHHTTTTHHHHHHHHHHHHTTS
T ss_pred hhHHhHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777666544
No 30
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=74.93 E-value=33 Score=28.06 Aligned_cols=14 Identities=7% Similarity=-0.073 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 011758 418 ELKEEAGATKIALE 431 (478)
Q Consensus 418 ~~keE~E~akaei~ 431 (478)
.+...+++++..+.
T Consensus 80 ~~e~kn~~L~~qL~ 93 (97)
T 2eqb_B 80 AIEILNKRLTEQLR 93 (97)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 34444444444443
No 31
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=73.26 E-value=29 Score=29.51 Aligned_cols=19 Identities=11% Similarity=0.132 Sum_probs=8.2
Q ss_pred HHhhHHHHHHHhHHHHHHh
Q 011758 359 IAGNLHVLLQKTKSELEAC 377 (478)
Q Consensus 359 ~v~~L~~EL~k~k~ELe~~ 377 (478)
.|..|..-++.+..+|+..
T Consensus 41 ~v~ql~~~i~~Le~eL~e~ 59 (120)
T 3i00_A 41 VVLQLKGHVSELEADLAEQ 59 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 32
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=73.05 E-value=33 Score=27.16 Aligned_cols=64 Identities=20% Similarity=0.364 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 271 LTQNLETQLTETMSEIAALQKQLENAKASDLDSVRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELK 350 (478)
Q Consensus 271 l~k~LE~kL~~~~~ei~~Lq~el~~~~~~~~~~v~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~ 350 (478)
+...||.++..+-.-|..||- |+++.+..-.....+...++...+.|..+..+++.++..-+
T Consensus 7 lleqLE~KIq~avdtI~lLqm------------------EieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq 68 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQM------------------EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 455566666555444444444 44444444444555555566666666666666666665554
Q ss_pred HH
Q 011758 351 EK 352 (478)
Q Consensus 351 ~~ 352 (478)
.+
T Consensus 69 ~R 70 (81)
T 2jee_A 69 ER 70 (81)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 33
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=72.91 E-value=24 Score=37.17 Aligned_cols=59 Identities=15% Similarity=0.211 Sum_probs=34.7
Q ss_pred HHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHH
Q 011758 309 SELDDAKGSLQKVAEEES-SLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELE 375 (478)
Q Consensus 309 ~ELee~k~~L~~a~~E~~-~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe 375 (478)
..+.... ..++...|+. .|+..+..|+.+|+..-..+..|+... .++..+|+|+...|.
T Consensus 96 ~rq~q~~-dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnL-------edq~~kIQRLEvDId 155 (562)
T 3ghg_A 96 GDFSSAN-NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNV-------RAQLVDMKRLEVDID 155 (562)
T ss_dssp SHHHHHH-HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 3344444 5566667776 677777777777777666665555544 444455555444443
No 34
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=72.30 E-value=11 Score=32.67 Aligned_cols=55 Identities=22% Similarity=0.384 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 153 TEREKYTSVFSELAAAKQELRKIHQDCNSTLEAKVTAFNLAAAAENSAKANMERVSELSKEI 214 (478)
Q Consensus 153 ~~~~q~~~~~~eL~s~k~EL~kl~~el~~~~e~k~~A~~~aeea~~~~~~~~~~ve~L~~El 214 (478)
..+.+|......|..+..++.+|..+|..-...+ ..|......+..-+++||..|
T Consensus 29 ~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R-------~~aE~~~~~ie~ElE~LTasL 83 (135)
T 2e7s_A 29 QLKEDYNTLKRELSDRDDEVKRLREDIAKENELR-------TKAEEEADKLNKEVEDLTASL 83 (135)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHH-------HHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555566666666666554333222 234444556666677777666
No 35
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=72.07 E-value=39 Score=27.60 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHhc
Q 011758 282 TMSEIAALQKQLENAK 297 (478)
Q Consensus 282 ~~~ei~~Lq~el~~~~ 297 (478)
..+.+..++..+..+.
T Consensus 29 l~~~i~~l~~~l~~l~ 44 (112)
T 1l8d_A 29 LKNKIGDLKTAIEELK 44 (112)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3344444444444443
No 36
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=71.11 E-value=47 Score=28.19 Aligned_cols=32 Identities=31% Similarity=0.587 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 318 LQKVAEEESSLRNLVESLKVELENVKKEHSEL 349 (478)
Q Consensus 318 L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l 349 (478)
+..++.|+..++..+.+|..+|+..+.....|
T Consensus 31 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~L 62 (129)
T 3tnu_B 31 LRNTKHEISEMNRMIQRLRAEIDNVKKQCANL 62 (129)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33444445555555555555555554444443
No 37
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=70.49 E-value=82 Score=32.26 Aligned_cols=47 Identities=26% Similarity=0.201 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 400 LETENARQEAEEMKNKAMELKEEAGATKIALEEAEKKLRAALEEAEE 446 (478)
Q Consensus 400 ~Eae~Ak~~a~~~~~el~~~keE~E~akaei~~~E~rL~a~~kE~ea 446 (478)
.+-+.+++.-..++.+...++++.+.++..+......+..+......
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (487)
T 3oja_A 428 SVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQE 474 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHH
Confidence 34444444455555555555555555555555554444444433333
No 38
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=68.31 E-value=44 Score=28.50 Aligned_cols=32 Identities=28% Similarity=0.368 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 318 LQKVAEEESSLRNLVESLKVELENVKKEHSEL 349 (478)
Q Consensus 318 L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l 349 (478)
+..++.|+..++..+.+|..+|+..+.....|
T Consensus 33 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sL 64 (131)
T 3tnu_A 33 VQSGKSEISELRRTMQNLEIELQSQLSMKASL 64 (131)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34444455555555555555555554444433
No 39
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=68.06 E-value=59 Score=28.49 Aligned_cols=60 Identities=20% Similarity=0.123 Sum_probs=35.7
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 385 RGASEEMISSLHQLSLETENARQEAEEMKNKAMELKEEAGATKIALEEAEKKLRAALEEA 444 (478)
Q Consensus 385 ~~~~~~L~~~Lqq~s~Eae~Ak~~a~~~~~el~~~keE~E~akaei~~~E~rL~a~~kE~ 444 (478)
...+..|...|..+..-++.|-..+..+...+..+-.+.+.+.-.+...+.++..+-.++
T Consensus 51 eEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL 110 (147)
T 2b9c_A 51 EEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEL 110 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666677777777777666666655555555555555555555555555444433
No 40
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=65.59 E-value=73 Score=28.21 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011758 274 NLETQLTETMSEIAALQKQLEN 295 (478)
Q Consensus 274 ~LE~kL~~~~~ei~~Lq~el~~ 295 (478)
+||-.|..+..++...+..+..
T Consensus 17 ~LeD~L~~~R~el~~~~~ri~~ 38 (154)
T 2ocy_A 17 HLEEQLNKSLKTIASQKAAIEN 38 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555544444443
No 41
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=64.55 E-value=69 Score=27.57 Aligned_cols=45 Identities=22% Similarity=0.203 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 386 GASEEMISSLHQLSLETENARQEAEEMKNKAMELKEEAGATKIAL 430 (478)
Q Consensus 386 ~~~~~L~~~Lqq~s~Eae~Ak~~a~~~~~el~~~keE~E~akaei 430 (478)
+.+++|+..+-=+..|++.-+......-.-..+++-|+|..+..+
T Consensus 112 sMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl 156 (167)
T 4gkw_A 112 SMVESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKI 156 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHH
Confidence 444556655555555666655555544444555555665555444
No 42
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=62.89 E-value=17 Score=31.58 Aligned_cols=19 Identities=11% Similarity=-0.011 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011758 418 ELKEEAGATKIALEEAEKK 436 (478)
Q Consensus 418 ~~keE~E~akaei~~~E~r 436 (478)
.+...+++++..+.+.+..
T Consensus 100 ~~e~r~~~L~~ql~e~e~l 118 (135)
T 2e7s_A 100 AIEILNKRLTEQLREKDML 118 (135)
T ss_dssp HHHHHHHHHHHTTTHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 43
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=62.78 E-value=71 Score=27.10 Aligned_cols=42 Identities=17% Similarity=0.337 Sum_probs=19.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 393 SSLHQLSLETENARQEAEEMKNKAMELKEEAGATKIALEEAE 434 (478)
Q Consensus 393 ~~Lqq~s~Eae~Ak~~a~~~~~el~~~keE~E~akaei~~~E 434 (478)
..|..+....+.-......+...-+++..++..++..+...+
T Consensus 83 ~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 83 AKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444455555555555555443
No 44
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=62.14 E-value=84 Score=27.73 Aligned_cols=47 Identities=21% Similarity=0.225 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 303 SVRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSEL 349 (478)
Q Consensus 303 ~v~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l 349 (478)
.+.....+|.+-...++.+.+|...|.-....+...+..++.+...|
T Consensus 83 ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 83 EIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555566666666666665556665555555555433
No 45
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=61.32 E-value=56 Score=25.43 Aligned_cols=62 Identities=18% Similarity=0.111 Sum_probs=47.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 58 RVLAKETQLHLAQRELNKLKDQLKNAEDTKAQAFVELEKAKRTVEDLSHKLKVVIESKESAI 119 (478)
Q Consensus 58 ~~~~~e~ql~~~qeel~k~k~ql~~aE~~k~~a~~EL~~ak~~~eeL~~kLe~a~~e~~~a~ 119 (478)
+...+..+.+.++..+..+...+..++....++..|+...++-+.-|...|++++..-..+.
T Consensus 7 Km~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~ 68 (81)
T 1ic2_A 7 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677888888888888888888888888888888888888888888887775554444
No 46
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=60.20 E-value=62 Score=25.58 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHH
Q 011758 327 SLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVV 379 (478)
Q Consensus 327 ~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~ 379 (478)
..-..+..|+.|++.+|.....+...-..+......|..+..+++.++..-+.
T Consensus 17 ~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~ 69 (81)
T 2jee_A 17 QAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 34455667777888888887777777777777777888888888888776653
No 47
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=60.01 E-value=48 Score=27.40 Aligned_cols=64 Identities=22% Similarity=0.381 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 011758 282 TMSEIAALQKQLENAKASDLDSVRIVTSELDDAKGSLQKVAEEESS-----LRNLVESLKVELENVKKEHSEL 349 (478)
Q Consensus 282 ~~~ei~~Lq~el~~~~~~~~~~v~~~~~ELee~k~~L~~a~~E~~~-----l~~~v~sLr~ELe~~k~el~~l 349 (478)
+++.|..||+++...+ ..+...+.-|.++....+.--+|++. -+..|..|++.|..+|..++..
T Consensus 33 tM~~ieeLQ~Ei~~~E----~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~ 101 (107)
T 2k48_A 33 TMSTLQELQENITAHE----QQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666555443 23444444455555444444444443 3445566666666666655544
No 48
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=58.56 E-value=37 Score=26.81 Aligned_cols=45 Identities=18% Similarity=0.317 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhH
Q 011758 334 SLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACV 378 (478)
Q Consensus 334 sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~ 378 (478)
++..||.+++.......-+...+...-..|..++.+++.+++.++
T Consensus 28 ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 28 SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777778888888888888877754
No 49
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=57.66 E-value=86 Score=26.42 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 307 VTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKE 345 (478)
Q Consensus 307 ~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~e 345 (478)
+..+|-.+...|..+......-...|..|+.-|+..+..
T Consensus 30 Lq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq 68 (121)
T 3mq7_A 30 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQ 68 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555566666666667777766666555
No 50
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=56.32 E-value=97 Score=26.64 Aligned_cols=61 Identities=26% Similarity=0.356 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 272 TQNLETQLTETMSEIAALQKQLENAKASDLDSVRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELK 350 (478)
Q Consensus 272 ~k~LE~kL~~~~~ei~~Lq~el~~~~~~~~~~v~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~ 350 (478)
...||+-|.+.-+-++.|-. ++..+++||++-+-.+.. .+.+.++|+.|-+.++.-++.++
T Consensus 100 LrELEADLKEKDsMVe~LT~-----------TiG~LrKELEdEklK~~E-------~MdSFE~LkvENE~vkerl~mYR 160 (167)
T 4gkw_A 100 LGELEADLKEKDSMVESLTE-----------TIGILRKELENEKLKAAE-------NMDSFEKLSMENENLKEKIAHYR 160 (167)
T ss_dssp THHHHHTHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhHHhhhhHHHHHHHH-----------HHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhHhHHHHHHHHH
Confidence 34666666665554444433 677788888887766553 37777888888888888777654
No 51
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=56.18 E-value=65 Score=24.56 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=39.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHH
Q 011758 315 KGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQ 368 (478)
Q Consensus 315 k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~ 368 (478)
...|..-.+|+..|...+.|||+.|.+-..---.|.....-+...+..|+-+++
T Consensus 9 ~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~~ 62 (74)
T 2q6q_A 9 NFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKLS 62 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcc
Confidence 556666778999999999999999988776666666655555555665555443
No 52
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=56.13 E-value=65 Score=24.55 Aligned_cols=27 Identities=30% Similarity=0.546 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 317 SLQKVAEEESSLRNLVESLKVELENVK 343 (478)
Q Consensus 317 ~L~~a~~E~~~l~~~v~sLr~ELe~~k 343 (478)
.|..++.|+..++..+.+|..||+.+|
T Consensus 50 ~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 50 ALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455556666666777777777776654
No 53
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=54.64 E-value=94 Score=25.97 Aligned_cols=95 Identities=13% Similarity=0.170 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Q 011758 200 AKANMERVSELSKEISTVQESIGQVKLATMQAQQEQAKVFAEKDLQ---RQSYKATLEESAKKLLALRNQFDPQLTQNLE 276 (478)
Q Consensus 200 ~~~~~~~ve~L~~El~~~Ke~l~~~~~a~~~Aee~~~~~~~~~~~~---~~~~~~~lee~~~~l~~L~~e~~~el~k~LE 276 (478)
......++..|..|+..||..+...+..+....-....-+..-... ...|-..|++...-++.-..-.. +-..|++
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~-~SLeD~E 83 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATI-VSLEDFE 83 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH-hhHHHHH
Confidence 3455667777778888888777666544333222211101111111 11222234444443333322222 4566777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011758 277 TQLTETMSEIAALQKQLEN 295 (478)
Q Consensus 277 ~kL~~~~~ei~~Lq~el~~ 295 (478)
.++...-...+.|+.+|..
T Consensus 84 ~k~n~aiErnalLE~El~E 102 (111)
T 2v66_B 84 QRLNQAIERNAFLESELDE 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776653
No 54
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=53.87 E-value=61 Score=25.25 Aligned_cols=57 Identities=25% Similarity=0.297 Sum_probs=27.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHH
Q 011758 310 ELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQK 369 (478)
Q Consensus 310 ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k 369 (478)
+|-+.+..|..+++. |-..++.|..|-+-++.++..+++.......++..|+.++.+
T Consensus 20 eLl~TKNaLnvvk~D---LI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 20 QLLETKNALNIVKND---LIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444444444432 345566666666666666666666666666666667666654
No 55
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=53.40 E-value=94 Score=25.61 Aligned_cols=60 Identities=12% Similarity=0.194 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 011758 271 LTQNLETQLTETMSEIAALQKQLENAKASDLDSVRIVTSELDDAKGSLQKVAEEESSLRNLVES 334 (478)
Q Consensus 271 l~k~LE~kL~~~~~ei~~Lq~el~~~~~~~~~~v~~~~~ELee~k~~L~~a~~E~~~l~~~v~s 334 (478)
....|+++-....-+|..|++.++... +.+..+.+++.+-...++..+-....|...+..
T Consensus 17 snAQLDNEKsal~YqVdlLKD~LEe~e----E~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~ 76 (103)
T 4h22_A 17 SNAQLDNEKTNFMYQVDTLKDMLLELE----EQLAESRRQYEEKNKEFEREKHAHSILQFQFAE 76 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777778888888887776 466777777776665555444333333333333
No 56
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=53.07 E-value=1.3e+02 Score=31.84 Aligned_cols=37 Identities=8% Similarity=0.122 Sum_probs=20.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 313 DAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSEL 349 (478)
Q Consensus 313 e~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l 349 (478)
+++..+.-++.++..--..+..|++-|+....++.+|
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRL 150 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRL 150 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554455566666666655555554
No 57
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=50.13 E-value=72 Score=25.01 Aligned_cols=64 Identities=20% Similarity=0.340 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 011758 282 TMSEIAALQKQLENAKASDLDSVRIVTSELDDAKGSLQKVAEEESS-----LRNLVESLKVELENVKKEHSEL 349 (478)
Q Consensus 282 ~~~ei~~Lq~el~~~~~~~~~~v~~~~~ELee~k~~L~~a~~E~~~-----l~~~v~sLr~ELe~~k~el~~l 349 (478)
+++.|..||+++...+ ..+.....-|.++....+.--+|+|. -+..|..|...|..+|..++..
T Consensus 3 ~M~~l~eLq~e~~~~E----~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~ 71 (78)
T 2ic6_A 3 HMSTLKEVQDNITLHE----QRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADL 71 (78)
T ss_dssp --CHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666655443 23444444455555444444444443 3445666666666666665544
No 58
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=47.56 E-value=37 Score=29.05 Aligned_cols=99 Identities=15% Similarity=0.182 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHHH
Q 011758 304 VRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEAK 383 (478)
Q Consensus 304 v~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eek 383 (478)
|.++-+||.++..+|..+..+-..|....-++.-.+.....++..+++ .-...|..|......+.+.|-.=+.+-..
T Consensus 4 vtSL~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kq---q~~~~~d~L~lQ~esmeaalkmEr~~~~e 80 (130)
T 3cl3_D 4 ASGSLGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQ---QHSVQVDQLRMQGQSVEAALRMERQAASE 80 (130)
T ss_dssp -----------------------------------------------C---TTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778899999999999888888888777777777777777665443 34556666777777777666555555455
Q ss_pred HhhhHHHHHHHHHHhHHHHHHH
Q 011758 384 IRGASEEMISSLHQLSLETENA 405 (478)
Q Consensus 384 a~~~~~~L~~~Lqq~s~Eae~A 405 (478)
-+.....|..+..++-.|-++.
T Consensus 81 EKrkLAqLQ~AY~~LfqeYd~~ 102 (130)
T 3cl3_D 81 EKRKLAQLQVAYHQLFQEYDNH 102 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777888888887776664
No 59
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=47.18 E-value=1.1e+02 Score=24.65 Aligned_cols=8 Identities=38% Similarity=0.505 Sum_probs=2.8
Q ss_pred HHHHhHHH
Q 011758 366 LLQKTKSE 373 (478)
Q Consensus 366 EL~k~k~E 373 (478)
+|..+..+
T Consensus 40 el~~le~E 47 (96)
T 3q8t_A 40 NLEKVQAE 47 (96)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 60
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=45.43 E-value=1.4e+02 Score=25.18 Aligned_cols=43 Identities=19% Similarity=0.267 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHH
Q 011758 331 LVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSE 373 (478)
Q Consensus 331 ~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~E 373 (478)
.---|..+|-+....+....-.-.....+|..|..-|.+.++.
T Consensus 26 ~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq 68 (121)
T 3mq7_A 26 VTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQ 68 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666777777666666655567777888888777776555
No 61
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=44.61 E-value=1.4e+02 Score=24.99 Aligned_cols=94 Identities=18% Similarity=0.154 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 011758 65 QLHLAQRELNKLKDQLKNAEDTKAQAFVEL----EKAKRTVEDLSHKLKVVIESKESAIKVTEAAKIQAKQIEESNCSNP 140 (478)
Q Consensus 65 ql~~~qeel~k~k~ql~~aE~~k~~a~~EL----~~ak~~~eeL~~kLe~a~~e~~~a~e~~e~~k~r~~Ele~~~~~~~ 140 (478)
+-+++|..+..+++++...-..|......+ +..+..|..|..+...+...-....+++--++.
T Consensus 7 ~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~------------- 73 (112)
T 1x79_B 7 QVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKR------------- 73 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 555666666666666666666666655554 345667777777766665333333322222222
Q ss_pred CCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 011758 141 SGSDGARNQDLETEREKYTSVFSELAAAKQELRKIHQDCNSTL 183 (478)
Q Consensus 141 ~~~~~a~k~eLe~~~~q~~~~~~eL~s~k~EL~kl~~el~~~~ 183 (478)
.++.+.+........|..+|.+|+.+=+.+.
T Consensus 74 ------------~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~ 104 (112)
T 1x79_B 74 ------------DVQEQMAVLMQSREQVSEELVRLQKDNDSLQ 104 (112)
T ss_dssp ------------HHHHHHHHHHHHHHHHHTC------------
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 4455777777788888888888887765543
No 62
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=44.36 E-value=1.2e+02 Score=24.03 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 413 KNKAMELKEEAGATKIALEEAEKKLRAALEEAE 445 (478)
Q Consensus 413 ~~el~~~keE~E~akaei~~~E~rL~a~~kE~e 445 (478)
...+..++.....+-..-..+|.++..+..|+.
T Consensus 48 E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 48 ENTLQSFRQDVDNASLARLDLERKVESLQEEIA 80 (86)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555566666666665553
No 63
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=43.97 E-value=1.3e+02 Score=24.38 Aligned_cols=33 Identities=21% Similarity=0.351 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 317 SLQKVAEEESSLRNLVESLKVELENVKKEHSEL 349 (478)
Q Consensus 317 ~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l 349 (478)
.++.+..++..|......+++++...+..+..+
T Consensus 11 ~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 11 KKTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333444444444444555555555555444
No 64
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=42.00 E-value=1.5e+02 Score=24.70 Aligned_cols=55 Identities=13% Similarity=0.156 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHh
Q 011758 323 EEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEAC 377 (478)
Q Consensus 323 ~E~~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~ 377 (478)
.|+..|+..-+.|...|-.+....+.|...+..+.++++.++..++.+-..-..+
T Consensus 42 ~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalL 96 (111)
T 2v66_B 42 DDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFL 96 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555555566666677777777777665544333
No 65
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=40.28 E-value=1.3e+02 Score=23.60 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=12.6
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHhHH
Q 011758 288 ALQKQLENAKASDLDSVRIVTSELDDAKGSLQ 319 (478)
Q Consensus 288 ~Lq~el~~~~~~~~~~v~~~~~ELee~k~~L~ 319 (478)
.+++++...+ .....+...|.++...-.
T Consensus 28 ~i~EELs~vr----~~ni~~eskL~eae~rn~ 55 (81)
T 1wt6_A 28 SLSREMEAIR----TDNQNFASQLREAEARNR 55 (81)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 3555554444 233344445555544444
No 66
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=39.67 E-value=1.7e+02 Score=24.47 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 414 NKAMELKEEAGATKIALEEAEKKLRAALEEAEEA 447 (478)
Q Consensus 414 ~el~~~keE~E~akaei~~~E~rL~a~~kE~eaa 447 (478)
..+..++..+..+-..--.++.+++.+..|+.--
T Consensus 69 ~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FL 102 (119)
T 3ol1_A 69 NTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444544444455555555555555543
No 67
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=37.90 E-value=1.5e+02 Score=23.63 Aligned_cols=37 Identities=5% Similarity=0.268 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 307 VTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVK 343 (478)
Q Consensus 307 ~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k 343 (478)
+..++.+++..|+.+..+-..+...++.|..++...|
T Consensus 54 ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 54 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444333
No 68
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=35.73 E-value=1.9e+02 Score=24.04 Aligned_cols=23 Identities=9% Similarity=0.214 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011758 324 EESSLRNLVESLKVELENVKKEH 346 (478)
Q Consensus 324 E~~~l~~~v~sLr~ELe~~k~el 346 (478)
.+..|+..++.-+.+-...+..-
T Consensus 63 ~I~vLkaQv~IY~~DF~aERadR 85 (110)
T 2v4h_A 63 TVPVLKAQADIYKADFQAERHAR 85 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccchhhH
Confidence 34445555555555544444443
No 69
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=34.93 E-value=99 Score=22.18 Aligned_cols=36 Identities=11% Similarity=0.291 Sum_probs=28.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011758 147 RNQDLETEREKYTSVFSELAAAKQELRKIHQDCNST 182 (478)
Q Consensus 147 ~k~eLe~~~~q~~~~~~eL~s~k~EL~kl~~el~~~ 182 (478)
.+.++...-.+-......|..++++|.+|+.+++.+
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555666677788899999999999999998764
No 70
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=33.86 E-value=2.7e+02 Score=25.69 Aligned_cols=34 Identities=12% Similarity=0.134 Sum_probs=23.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 146 ARNQDLETEREKYTSVFSELAAAKQELRKIHQDC 179 (478)
Q Consensus 146 a~k~eLe~~~~q~~~~~~eL~s~k~EL~kl~~el 179 (478)
..+.+++.++.+|..+-+.|.+++.+|..++..+
T Consensus 95 ~s~~~~~~a~~~~~~a~a~l~~a~a~l~~a~~~l 128 (277)
T 2f1m_A 95 ISKQEYDQALADAQQANAAVTAAKAAVETARINL 128 (277)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567777777777777777777777666655544
No 71
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=33.13 E-value=1.2e+02 Score=24.60 Aligned_cols=63 Identities=21% Similarity=0.347 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 011758 283 MSEIAALQKQLENAKASDLDSVRIVTSELDDAKGSLQKVAEEESS-----LRNLVESLKVELENVKKEHSEL 349 (478)
Q Consensus 283 ~~ei~~Lq~el~~~~~~~~~~v~~~~~ELee~k~~L~~a~~E~~~-----l~~~v~sLr~ELe~~k~el~~l 349 (478)
++.|..||.++...+ ..+.....-|.++....+.--+++|. -+..|..|...|..++..++..
T Consensus 4 M~~i~eLq~e~~~~E----~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~ 71 (96)
T 2ic9_A 4 MSTLKEVQDNITLHE----QRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADL 71 (96)
T ss_dssp CCTHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554433 23333344444444433333344432 3344555555555555555443
No 72
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=31.81 E-value=92 Score=25.02 Aligned_cols=20 Identities=35% Similarity=0.335 Sum_probs=9.3
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 011758 58 RVLAKETQLHLAQRELNKLK 77 (478)
Q Consensus 58 ~~~~~e~ql~~~qeel~k~k 77 (478)
+|..++.+=..+.-++..++
T Consensus 24 KVR~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 24 KVRFLEQQNKILLAELEQLK 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 55555544444444444443
No 73
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=31.68 E-value=1.2e+02 Score=20.56 Aligned_cols=39 Identities=31% Similarity=0.484 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 255 ESAKKLLALRNQ-FDPQLTQNLETQLTETMSEIAALQKQL 293 (478)
Q Consensus 255 e~~~~l~~L~~e-~~~el~k~LE~kL~~~~~ei~~Lq~el 293 (478)
..+.+++.|+++ |.|+-..-||++|......+..|+-.+
T Consensus 4 alkselqalkkegfspeelaaleselqalekklaalkskl 43 (48)
T 1g6u_A 4 ALKSELQALKKEGFSPEELAALESELQALEKKLAALKSKL 43 (48)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677665 556555566666655554444444433
No 74
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=31.51 E-value=1.3e+02 Score=20.77 Aligned_cols=41 Identities=24% Similarity=0.406 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHH
Q 011758 334 SLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSEL 374 (478)
Q Consensus 334 sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~EL 374 (478)
-|+..+..+|..--++...+......|.+|..++.++..+.
T Consensus 7 ylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 7 YLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 46666777777777777778778888888888888876654
No 75
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=30.60 E-value=82 Score=33.61 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011758 101 VEDLSHKLKVVIESKESAIKVTEAAKIQAKQIEE 134 (478)
Q Consensus 101 ~eeL~~kLe~a~~e~~~a~e~~e~~k~r~~Ele~ 134 (478)
-.+|...|...+.+-.++.++..-..-.+..|+.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e 370 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEAQDMILRLEE 370 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3455556666666666665555555555555543
No 76
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=28.79 E-value=2.1e+02 Score=22.36 Aligned_cols=50 Identities=16% Similarity=0.294 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhH
Q 011758 329 RNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACV 378 (478)
Q Consensus 329 ~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~ 378 (478)
+..+..-..||+..+.....|..-.......|..|..+-..+...++.++
T Consensus 17 ~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk 66 (78)
T 3iv1_A 17 KEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLK 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433333333333333333333333333333
No 77
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=28.11 E-value=5.4e+02 Score=26.94 Aligned_cols=118 Identities=12% Similarity=0.130 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHH----HHhhhHHHHHHHHHHhHHH
Q 011758 326 SSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEA----KIRGASEEMISSLHQLSLE 401 (478)
Q Consensus 326 ~~l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Ee----ka~~~~~~L~~~Lqq~s~E 401 (478)
...+...+.++.||..+.+.+++.+++...+..-+.++..+|.....-+..+.+... -+...|+.=.++-|-.--.
T Consensus 317 ~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~~f~~~n~~p~~~Gh~~w~~~~~~ 396 (551)
T 2b5u_A 317 EAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFNRFAHDPMAGGHRMWQMAGLK 396 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCTTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHhhhhhhhhccChhhccchhhhhccch
Confidence 334444566666677776677776666655555566666666555444444433211 1111111111111111124
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 011758 402 TENARQEAEEMKNKAMELKEEAGATKIALE-EAEKKLRAALEE 443 (478)
Q Consensus 402 ae~Ak~~a~~~~~el~~~keE~E~akaei~-~~E~rL~a~~kE 443 (478)
+..|+......+.-...++.|...++..+. .||.|-+...++
T Consensus 397 ~~~~~~dv~~~~a~~d~~~~~~s~~~~~ls~~me~Rkq~e~k~ 439 (551)
T 2b5u_A 397 AQRAQTDVNNKQAAFDAAAKEKSDADAALSSAMESRKKKEDKK 439 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHHHHHHHHhhcccchhhhhhhhhhcccchhhhh
Confidence 444555555555555666777777777777 667774444443
No 78
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=27.87 E-value=2.4e+02 Score=22.78 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 323 EEESSLRNLVESLKVELENVKKEHSEL 349 (478)
Q Consensus 323 ~E~~~l~~~v~sLr~ELe~~k~el~~l 349 (478)
+.+..|+..++.-+++-...+..-..+
T Consensus 40 E~i~vLk~Qv~IY~~DF~aERadREkl 66 (94)
T 3jsv_C 40 ETVPVLKAQADIYKADFQAERHAREKL 66 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555544443
No 79
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=27.62 E-value=3.1e+02 Score=26.42 Aligned_cols=34 Identities=12% Similarity=0.284 Sum_probs=21.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 147 RNQDLETEREKYTSVFSELAAAKQELRKIHQDCN 180 (478)
Q Consensus 147 ~k~eLe~~~~q~~~~~~eL~s~k~EL~kl~~el~ 180 (478)
.+.+++.++..|..+-+++..+...|..++.++.
T Consensus 113 s~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~ 146 (369)
T 4dk0_A 113 SLDTLNTAKATLNNAKAEMDVVQENIKQAEIEVN 146 (369)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777666666665555444
No 80
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=25.78 E-value=1.1e+02 Score=20.43 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 93 ELEKAKRTVEDLSHKLKVVIESKESA 118 (478)
Q Consensus 93 EL~~ak~~~eeL~~kLe~a~~e~~~a 118 (478)
=|+++|..|.-|..+|...+.++.+.
T Consensus 9 TLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 9 SLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788888888888888888777764
No 81
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=24.51 E-value=2.9e+02 Score=22.64 Aligned_cols=65 Identities=11% Similarity=0.024 Sum_probs=31.1
Q ss_pred HHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 011758 348 ELKEKEAETESIAGNLHVLLQKTKSELEACVVEEAKIRGASEEMISSLHQLSLETENARQEAEEM 412 (478)
Q Consensus 348 ~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eeka~~~~~~L~~~Lqq~s~Eae~Ak~~a~~~ 412 (478)
.+.++-..|=+..+.|--+...+.-+++-+++.-+.....+..+...+.....+.+.-+.....+
T Consensus 6 EvEEKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L 70 (103)
T 4h22_A 6 EVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSIL 70 (103)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555666666666666666655544444444444444444444444444433333
No 82
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=24.30 E-value=6.3e+02 Score=26.37 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 306 IVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSEL 349 (478)
Q Consensus 306 ~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l 349 (478)
.+..+|......|.+...+..........-..++...+..+..+
T Consensus 63 ~Ye~~l~kY~~dlakY~~~~AeY~~kl~aYe~~~~~~~k~lae~ 106 (497)
T 3iox_A 63 DYEAKLAKYQADLAKYQKDLADYPVKLKAYEDEQTSIKAALAEL 106 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555544444444444444444444444444443
No 83
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=24.24 E-value=2.6e+02 Score=21.85 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011758 332 VESLKVELENVKKEHSELKEKE 353 (478)
Q Consensus 332 v~sLr~ELe~~k~el~~l~~~e 353 (478)
+..|..|-..+...+.-++.+.
T Consensus 48 i~~l~~E~~~l~~ni~~lk~K~ 69 (78)
T 3iv1_A 48 VTRLDQEVAEVDKNIELLKKKD 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 84
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=24.22 E-value=3.5e+02 Score=25.76 Aligned_cols=34 Identities=9% Similarity=0.259 Sum_probs=21.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 147 RNQDLETEREKYTSVFSELAAAKQELRKIHQDCN 180 (478)
Q Consensus 147 ~k~eLe~~~~q~~~~~~eL~s~k~EL~kl~~el~ 180 (478)
.+.+++.++..+...-+++..+...|..++..+.
T Consensus 112 s~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~ 145 (341)
T 3fpp_A 112 SQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLD 145 (341)
T ss_dssp TTHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777666666666666665555543
No 85
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=23.99 E-value=87 Score=19.59 Aligned_cols=22 Identities=41% Similarity=0.514 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q 011758 165 LAAAKQELRKIHQDCNSTLEAK 186 (478)
Q Consensus 165 L~s~k~EL~kl~~el~~~~e~k 186 (478)
|...|.||..+++..+++++.-
T Consensus 1 lQ~IkkELtQIK~kvDsLLe~L 22 (28)
T 1txp_A 1 IQAIKKELTQIKQKVDSLLENL 22 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHH
Confidence 4578889999999998888654
No 86
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=23.60 E-value=2.1e+02 Score=20.57 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011758 419 LKEEAGATKIALEEAEKKL 437 (478)
Q Consensus 419 ~keE~E~akaei~~~E~rL 437 (478)
++.++..++.+...+..||
T Consensus 30 l~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 30 ARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3334444444444444444
No 87
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=23.34 E-value=2.7e+02 Score=21.85 Aligned_cols=76 Identities=13% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 011758 203 NMERVSELSKEISTVQESIGQVKLATMQAQQEQAKVFAEKDLQRQSYKATLEESAKKLLALRNQFDPQLTQNLETQLTET 282 (478)
Q Consensus 203 ~~~~ve~L~~El~~~Ke~l~~~~~a~~~Aee~~~~~~~~~~~~~~~~~~~lee~~~~l~~L~~e~~~el~k~LE~kL~~~ 282 (478)
....+..+..++..+++.+........+.+.....+..++..-... +..++.....|...-. +|+.++.+.
T Consensus 12 ~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q----l~eaEe~~~~L~~~K~-----eLE~~l~el 82 (89)
T 3bas_A 12 QEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS----MKQLEDKVEELLSKNY-----HLENEVARL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH-----HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHH-----HHHHHHHHH
Q ss_pred HHHHH
Q 011758 283 MSEIA 287 (478)
Q Consensus 283 ~~ei~ 287 (478)
...++
T Consensus 83 ~~rl~ 87 (89)
T 3bas_A 83 KKLVG 87 (89)
T ss_dssp HHHHT
T ss_pred HHHhh
No 88
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=23.22 E-value=3.2e+02 Score=22.66 Aligned_cols=31 Identities=13% Similarity=0.140 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Q 011758 205 ERVSELSKEISTVQESIGQVKLATMQAQQEQ 235 (478)
Q Consensus 205 ~~ve~L~~El~~~Ke~l~~~~~a~~~Aee~~ 235 (478)
++|.-|...+...+.-...-+++...+..++
T Consensus 62 E~I~vLkaQv~IY~~DF~aERadREkl~~eK 92 (110)
T 2v4h_A 62 ETVPVLKAQADIYKADFQAERHAREKLVEKK 92 (110)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccchhhHHHHHhHH
Confidence 4567777777777776666555555544443
No 89
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=22.60 E-value=6e+02 Score=25.59 Aligned_cols=48 Identities=10% Similarity=0.152 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHH
Q 011758 332 VESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVV 379 (478)
Q Consensus 332 v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~ 379 (478)
.+.|+..+.-+|.....--.+......-|.++..+++|+...|+.|+.
T Consensus 115 s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c~~ 162 (390)
T 1deq_A 115 NEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIKIR 162 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444444444333334444555566666666666666655543
No 90
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=22.46 E-value=94 Score=33.17 Aligned_cols=52 Identities=19% Similarity=0.236 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011758 412 MKNKAMELKEEAGATKIALEEAEKKLRAALEEAEEAKGAETRALDRLRRCLR 463 (478)
Q Consensus 412 ~~~el~~~keE~E~akaei~~~E~rL~a~~kE~eaakasE~~Al~~l~~l~e 463 (478)
+..+++.+..++.....+...-+.....+..++..|+.++..|-..|...+.
T Consensus 410 l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l~~~~~ 461 (575)
T 2i1j_A 410 LEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALLAATT 461 (575)
T ss_dssp --------------------------------CHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344444445555555555555555556667788888888888888877553
No 91
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=22.43 E-value=1.2e+02 Score=21.28 Aligned_cols=14 Identities=50% Similarity=0.601 Sum_probs=7.2
Q ss_pred HHHHHhHHHHHHHH
Q 011758 312 DDAKGSLQKVAEEE 325 (478)
Q Consensus 312 ee~k~~L~~a~~E~ 325 (478)
.++...|+++++|+
T Consensus 18 ~E~RkElqK~K~EI 31 (45)
T 1use_A 18 EEVKKELQKVKEEI 31 (45)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555554
No 92
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=22.27 E-value=4.4e+02 Score=23.91 Aligned_cols=36 Identities=14% Similarity=0.236 Sum_probs=16.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 316 GSLQKVAEEESSLRNLVESLKVELENVKKEHSELKE 351 (478)
Q Consensus 316 ~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~ 351 (478)
.-+.+...|...|...+++...|++.++..++.++.
T Consensus 20 ~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~ 55 (190)
T 4emc_A 20 LLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNA 55 (190)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444444444443
No 93
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.19 E-value=4e+02 Score=23.38 Aligned_cols=37 Identities=11% Similarity=0.093 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 405 ARQEAEEMKNKAMELKEEAGATKIALEEAEKKLRAAL 441 (478)
Q Consensus 405 Ak~~a~~~~~el~~~keE~E~akaei~~~E~rL~a~~ 441 (478)
|-.....++.+-..+....++++..+.+.+.+|....
T Consensus 99 AN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq 135 (154)
T 2ocy_A 99 ANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLT 135 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444445555555555555555554433
No 94
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=21.60 E-value=3.3e+02 Score=22.19 Aligned_cols=15 Identities=20% Similarity=0.078 Sum_probs=6.2
Q ss_pred HHHHHHHhHHHHHHh
Q 011758 363 LHVLLQKTKSELEAC 377 (478)
Q Consensus 363 L~~EL~k~k~ELe~~ 377 (478)
...++.++..|++.+
T Consensus 73 ~~~~~e~Lq~E~erL 87 (100)
T 1go4_E 73 LREDHSQLQAECERL 87 (100)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 95
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=20.50 E-value=3e+02 Score=21.71 Aligned_cols=36 Identities=31% Similarity=0.415 Sum_probs=26.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 316 GSLQKVAEEESSLRNLVESLKVELENVKKEHSELKE 351 (478)
Q Consensus 316 ~~L~~a~~E~~~l~~~v~sLr~ELe~~k~el~~l~~ 351 (478)
..|..+-+|-..|...+++|..++...|.++..++.
T Consensus 39 ~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 39 KALYEALKENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777777777777777777777776655
No 96
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=20.24 E-value=3e+02 Score=21.08 Aligned_cols=44 Identities=27% Similarity=0.195 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhH
Q 011758 328 LRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTK 371 (478)
Q Consensus 328 l~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k 371 (478)
++..+..|+.+|..-..++..|++.-+.-+.-.+.|+.||--+.
T Consensus 16 ~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislN 59 (75)
T 3a7o_A 16 LLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGT 59 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhH
Confidence 34455566666666666666666655555555555555555443
Done!