Query 011758
Match_columns 478
No_of_seqs 170 out of 211
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 14:43:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011758.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011758hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vcsa1 a.47.2.1 (A:8-96) Vesi 37.4 72 0.0053 23.5 9.6 47 302-348 31-85 (89)
2 d1fxka_ a.2.5.1 (A:) Prefoldin 21.0 1.5E+02 0.011 21.9 9.7 29 317-345 73-101 (107)
3 d1gqea_ e.38.1.1 (A:) Polypept 18.0 3.4E+02 0.025 24.6 11.1 12 254-265 9-20 (362)
4 d1fxkc_ a.2.5.1 (C:) Prefoldin 16.4 2.1E+02 0.015 21.6 13.2 36 305-340 91-126 (133)
5 d1fxka_ a.2.5.1 (A:) Prefoldin 14.3 2.2E+02 0.016 20.9 11.5 10 287-296 11-20 (107)
6 d1seta1 a.2.7.1 (A:1-110) Sery 12.7 2.5E+02 0.018 20.6 10.2 25 328-352 69-93 (110)
7 d1vcsa1 a.47.2.1 (A:8-96) Vesi 9.6 3.1E+02 0.022 19.7 9.3 73 249-321 7-86 (89)
8 d1fxkc_ a.2.5.1 (C:) Prefoldin 9.6 3.4E+02 0.025 20.2 12.1 7 258-264 15-21 (133)
9 d2cq1a1 d.58.7.1 (A:51-138) Po 9.2 54 0.0039 23.3 1.4 35 5-39 1-35 (88)
10 d2azeb1 e.63.1.2 (B:201-301) T 9.1 2.4E+02 0.018 20.9 5.4 40 339-378 3-42 (101)
No 1
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=37.43 E-value=72 Score=23.45 Aligned_cols=47 Identities=21% Similarity=0.310 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Q 011758 302 DSVRIVTSELDDAKGSLQKVAEEESS--------LRNLVESLKVELENVKKEHSE 348 (478)
Q Consensus 302 ~~v~~~~~ELee~k~~L~~a~~E~~~--------l~~~v~sLr~ELe~~k~el~~ 348 (478)
..|..+...|+++..-|+..--|+.. +...+..-+++|++++.++..
T Consensus 31 ~~l~~ie~~leEA~ell~qMelEvr~~p~s~R~~~~~klr~Yk~dl~~lk~elk~ 85 (89)
T d1vcsa1 31 QMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKR 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666666666666666655544 455555555666555555443
No 2
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=20.99 E-value=1.5e+02 Score=21.88 Aligned_cols=29 Identities=14% Similarity=0.260 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 317 SLQKVAEEESSLRNLVESLKVELENVKKE 345 (478)
Q Consensus 317 ~L~~a~~E~~~l~~~v~sLr~ELe~~k~e 345 (478)
+++.+..++..|......+..+++..+..
T Consensus 73 ~~e~l~~~i~~l~~q~~~l~~~l~~~~~~ 101 (107)
T d1fxka_ 73 KLETLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444433
No 3
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=18.04 E-value=3.4e+02 Score=24.65 Aligned_cols=12 Identities=17% Similarity=0.277 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHh
Q 011758 254 EESAKKLLALRN 265 (478)
Q Consensus 254 ee~~~~l~~L~~ 265 (478)
.+..+.+..|+.
T Consensus 9 ~eL~~rl~~Lr~ 20 (362)
T d1gqea_ 9 QDLTERSDVLRG 20 (362)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333433
No 4
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=16.44 E-value=2.1e+02 Score=21.59 Aligned_cols=36 Identities=19% Similarity=0.360 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 305 RIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELE 340 (478)
Q Consensus 305 ~~~~~ELee~k~~L~~a~~E~~~l~~~v~sLr~ELe 340 (478)
..+.+-++.++..++....+...+...+..+...++
T Consensus 91 ~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~ 126 (133)
T d1fxkc_ 91 ESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAE 126 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444443333
No 5
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=14.30 E-value=2.2e+02 Score=20.85 Aligned_cols=10 Identities=30% Similarity=0.331 Sum_probs=4.3
Q ss_pred HHHHHHHHHh
Q 011758 287 AALQKQLENA 296 (478)
Q Consensus 287 ~~Lq~el~~~ 296 (478)
..++.++..+
T Consensus 11 q~lq~el~~~ 20 (107)
T d1fxka_ 11 QQLQQQAQAI 20 (107)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 6
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=12.72 E-value=2.5e+02 Score=20.56 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758 328 LRNLVESLKVELENVKKEHSELKEK 352 (478)
Q Consensus 328 l~~~v~sLr~ELe~~k~el~~l~~~ 352 (478)
+...+.+|+.++......+..+...
T Consensus 69 l~~~~k~lk~~i~~le~~~~~~~~~ 93 (110)
T d1seta1 69 LIARGKALGEEAKRLEEALREKEAR 93 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555444444444443
No 7
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.64 E-value=3.1e+02 Score=19.66 Aligned_cols=73 Identities=15% Similarity=0.246 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHhcc-c--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHHHHhHHHH
Q 011758 249 YKATLEESAKKLLALRNQF-D--PQLTQNLETQLTETMSEIAALQKQLENAKASDL----DSVRIVTSELDDAKGSLQKV 321 (478)
Q Consensus 249 ~~~~lee~~~~l~~L~~e~-~--~el~k~LE~kL~~~~~ei~~Lq~el~~~~~~~~----~~v~~~~~ELee~k~~L~~a 321 (478)
|..-..++..++..+..-- + -....+++..|.+....|..+.-++..+-.+.. ..+..++.+|+.++..+..+
T Consensus 7 y~~l~a~i~~kl~~i~~~~geerk~~l~~ie~~leEA~ell~qMelEvr~~p~s~R~~~~~klr~Yk~dl~~lk~elk~a 86 (89)
T d1vcsa1 7 FAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRS 86 (89)
T ss_dssp HHHHHHHHHHHHHHGGGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444455554443311 1 145666677777777777776666665543322 23455555555555544433
No 8
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=9.61 E-value=3.4e+02 Score=20.22 Aligned_cols=7 Identities=0% Similarity=0.178 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 011758 258 KKLLALR 264 (478)
Q Consensus 258 ~~l~~L~ 264 (478)
..+..|.
T Consensus 15 ~~l~~l~ 21 (133)
T d1fxkc_ 15 SQVELIQ 21 (133)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 9
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.18 E-value=54 Score=23.29 Aligned_cols=35 Identities=11% Similarity=0.080 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCccccccCCCCchhhHHHHhhhcCC
Q 011758 5 GRQNSTDSPRAEVGEIDTSAPFQSVKDAVTLFGEG 39 (478)
Q Consensus 5 ~~~~~~~~~~~~~~eidt~~p~~SVk~Avs~Fg~~ 39 (478)
++..+..|..-++|-|+...+-+.++...+.||.+
T Consensus 1 d~~~~~Ps~~l~V~nLp~~~t~~~L~~~f~~~G~i 35 (88)
T d2cq1a1 1 DKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKV 35 (88)
T ss_dssp CCCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccccc
No 10
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.11 E-value=2.4e+02 Score=20.89 Aligned_cols=40 Identities=15% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhH
Q 011758 339 LENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACV 378 (478)
Q Consensus 339 Le~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~ 378 (478)
+..++.++..|...|......|..+...|..+..+-+..+
T Consensus 3 ~~~L~~El~~L~~~E~~LD~li~~~~~~L~~lted~~n~k 42 (101)
T d2azeb1 3 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQR 42 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhcc
Done!