Query 011759
Match_columns 478
No_of_seqs 262 out of 831
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 04:55:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011759.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011759hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4563 Cell cycle-regulated h 99.9 2E-24 4.3E-29 218.4 16.2 272 62-376 37-330 (400)
2 KOG1840 Kinesin light chain [C 99.7 7.2E-17 1.6E-21 173.4 20.1 163 62-308 237-400 (508)
3 KOG1840 Kinesin light chain [C 99.6 1.9E-14 4.1E-19 154.9 20.7 159 65-307 198-357 (508)
4 PF13424 TPR_12: Tetratricopep 99.5 5.2E-14 1.1E-18 113.4 9.0 78 229-307 1-78 (78)
5 KOG4626 O-linked N-acetylgluco 99.4 5.6E-13 1.2E-17 142.8 9.7 56 65-128 217-272 (966)
6 KOG4626 O-linked N-acetylgluco 99.3 2.8E-11 6.1E-16 130.0 13.4 167 65-305 319-486 (966)
7 TIGR02521 type_IV_pilW type IV 99.2 1.7E-09 3.7E-14 99.7 17.1 53 64-124 29-81 (234)
8 PRK11189 lipoprotein NlpI; Pro 99.2 1.4E-09 3.1E-14 109.8 17.8 173 65-305 63-266 (296)
9 TIGR00990 3a0801s09 mitochondr 99.1 6.7E-10 1.4E-14 122.5 16.1 167 65-306 330-498 (615)
10 TIGR00990 3a0801s09 mitochondr 99.1 4.4E-09 9.6E-14 116.0 20.5 175 66-308 399-575 (615)
11 PF14938 SNAP: Soluble NSF att 99.1 7.7E-09 1.7E-13 103.8 18.6 149 66-304 35-184 (282)
12 TIGR02521 type_IV_pilW type IV 99.1 6.9E-09 1.5E-13 95.7 16.2 134 66-304 65-198 (234)
13 KOG4563 Cell cycle-regulated h 99.0 5.8E-11 1.3E-15 121.3 0.6 308 1-321 1-342 (400)
14 KOG1130 Predicted G-alpha GTPa 99.0 2.6E-09 5.7E-14 110.9 11.8 98 206-306 209-306 (639)
15 PF13424 TPR_12: Tetratricopep 99.0 2.7E-09 5.8E-14 85.8 9.6 60 206-265 19-78 (78)
16 PRK15359 type III secretion sy 99.0 4.2E-09 9.2E-14 95.7 11.7 85 206-305 38-122 (144)
17 KOG1130 Predicted G-alpha GTPa 98.9 1.6E-09 3.5E-14 112.4 7.0 171 65-305 94-265 (639)
18 COG3063 PilF Tfp pilus assembl 98.9 3.5E-08 7.5E-13 96.2 15.5 142 62-308 31-172 (250)
19 KOG0553 TPR repeat-containing 98.9 1.2E-08 2.5E-13 102.7 12.2 106 61-265 76-181 (304)
20 CHL00033 ycf3 photosystem I as 98.9 3.3E-08 7.1E-13 91.2 14.1 125 64-277 33-157 (168)
21 PRK09782 bacteriophage N4 rece 98.9 2.1E-08 4.6E-13 116.4 15.7 161 68-304 544-706 (987)
22 PRK15174 Vi polysaccharide exp 98.9 4.7E-08 1E-12 109.3 16.3 162 70-306 216-383 (656)
23 TIGR03302 OM_YfiO outer membra 98.8 1E-07 2.3E-12 91.7 16.4 188 64-302 31-230 (235)
24 PRK12370 invasion protein regu 98.8 5.3E-08 1.2E-12 106.6 16.0 132 67-304 339-470 (553)
25 KOG1126 DNA-binding cell divis 98.8 4.5E-09 9.7E-14 114.1 7.4 165 67-305 354-519 (638)
26 PRK12370 invasion protein regu 98.8 6.2E-08 1.4E-12 106.1 16.4 139 68-304 260-401 (553)
27 PF13414 TPR_11: TPR repeat; P 98.8 1.3E-08 2.9E-13 79.7 8.0 65 232-304 2-67 (69)
28 PRK15359 type III secretion sy 98.8 4.6E-08 1E-12 88.9 12.5 112 68-286 26-137 (144)
29 PRK10370 formate-dependent nit 98.8 4.6E-08 1E-12 93.7 13.0 119 79-304 52-173 (198)
30 PRK15179 Vi polysaccharide bio 98.8 8E-08 1.7E-12 107.9 16.6 134 66-306 86-219 (694)
31 PLN03088 SGT1, suppressor of 98.8 4.2E-08 9E-13 102.0 13.1 101 66-265 2-102 (356)
32 PRK15174 Vi polysaccharide exp 98.8 6.8E-08 1.5E-12 108.0 15.6 79 218-304 269-347 (656)
33 PRK11788 tetratricopeptide rep 98.8 2.5E-07 5.5E-12 94.9 18.5 172 66-304 69-243 (389)
34 PRK11788 tetratricopeptide rep 98.8 2E-07 4.4E-12 95.6 17.8 181 59-305 28-210 (389)
35 CHL00033 ycf3 photosystem I as 98.8 5.2E-08 1.1E-12 89.9 11.9 101 206-311 49-149 (168)
36 TIGR02552 LcrH_SycD type III s 98.8 8E-08 1.7E-12 84.3 11.3 84 207-305 32-115 (135)
37 TIGR02917 PEP_TPR_lipo putativ 98.8 1.4E-07 3E-12 104.2 15.7 187 66-306 22-224 (899)
38 PF14938 SNAP: Soluble NSF att 98.7 1.8E-07 3.9E-12 93.9 14.3 98 206-307 49-147 (282)
39 KOG1126 DNA-binding cell divis 98.7 2.6E-08 5.6E-13 108.3 8.4 133 66-305 421-553 (638)
40 KOG1125 TPR repeat-containing 98.7 1.8E-07 3.8E-12 100.7 14.4 108 204-319 428-555 (579)
41 PRK11447 cellulose synthase su 98.7 1.5E-07 3.2E-12 111.4 15.3 167 71-304 274-447 (1157)
42 PF10516 SHNi-TPR: SHNi-TPR; 98.7 1.9E-08 4.1E-13 71.9 4.6 38 233-270 1-38 (38)
43 PRK11189 lipoprotein NlpI; Pro 98.7 2.3E-07 4.9E-12 93.9 13.6 84 207-305 79-162 (296)
44 PRK11447 cellulose synthase su 98.6 2.6E-07 5.6E-12 109.4 13.4 168 68-304 353-524 (1157)
45 PRK09782 bacteriophage N4 rece 98.6 2.9E-07 6.3E-12 107.1 13.3 165 68-308 578-744 (987)
46 PF13429 TPR_15: Tetratricopep 98.6 5.2E-07 1.1E-11 89.6 12.6 64 235-306 216-279 (280)
47 PRK02603 photosystem I assembl 98.6 9.1E-07 2E-11 82.1 13.4 55 62-121 31-85 (172)
48 PRK10370 formate-dependent nit 98.6 8.9E-07 1.9E-11 84.9 12.9 104 66-265 73-176 (198)
49 KOG1173 Anaphase-promoting com 98.6 4.8E-07 1E-11 97.2 11.9 91 206-304 428-518 (611)
50 TIGR02917 PEP_TPR_lipo putativ 98.5 1.8E-06 4E-11 95.3 16.3 168 65-307 124-293 (899)
51 PRK15363 pathogenicity island 98.5 1.7E-06 3.7E-11 80.3 13.3 85 206-305 49-133 (157)
52 COG3063 PilF Tfp pilus assembl 98.5 1.2E-06 2.6E-11 85.7 12.4 130 66-300 69-198 (250)
53 TIGR02795 tol_pal_ybgF tol-pal 98.5 2.2E-06 4.9E-11 72.4 11.8 91 206-305 16-106 (119)
54 TIGR02795 tol_pal_ybgF tol-pal 98.5 4.1E-06 8.9E-11 70.8 13.0 105 66-263 2-106 (119)
55 PRK02603 photosystem I assembl 98.5 6.2E-06 1.4E-10 76.5 15.3 97 206-314 49-145 (172)
56 PRK04841 transcriptional regul 98.4 9.4E-06 2E-10 92.9 19.8 153 66-306 452-604 (903)
57 PF09976 TPR_21: Tetratricopep 98.4 3.1E-05 6.6E-10 70.0 18.5 139 62-302 7-145 (145)
58 TIGR02552 LcrH_SycD type III s 98.4 1.2E-05 2.6E-10 70.4 15.1 100 66-264 17-116 (135)
59 PRK04841 transcriptional regul 98.4 1.6E-05 3.5E-10 91.0 20.0 152 66-306 491-643 (903)
60 PRK10153 DNA-binding transcrip 98.4 8.3E-06 1.8E-10 89.1 16.0 142 65-304 338-482 (517)
61 KOG1839 Uncharacterized protei 98.4 3.4E-06 7.4E-11 97.9 13.6 164 62-310 928-1092(1236)
62 cd05804 StaR_like StaR_like; a 98.4 1.5E-05 3.2E-10 80.9 16.8 172 67-304 44-215 (355)
63 KOG0553 TPR repeat-containing 98.4 9.7E-07 2.1E-11 89.0 7.7 100 206-320 95-200 (304)
64 PLN03088 SGT1, suppressor of 98.4 1.3E-06 2.9E-11 90.9 9.0 85 206-305 16-100 (356)
65 KOG0547 Translocase of outer m 98.3 5E-06 1.1E-10 88.4 13.0 180 66-312 394-574 (606)
66 KOG0547 Translocase of outer m 98.3 1.9E-06 4.2E-11 91.5 9.9 186 49-305 341-533 (606)
67 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 1.7E-06 3.7E-11 91.8 9.3 70 230-304 72-141 (453)
68 KOG1125 TPR repeat-containing 98.3 2E-06 4.4E-11 92.7 9.8 132 66-296 430-563 (579)
69 PRK15363 pathogenicity island 98.3 1.1E-05 2.4E-10 74.9 13.5 103 63-264 32-134 (157)
70 PF13374 TPR_10: Tetratricopep 98.3 1.1E-06 2.4E-11 61.8 4.9 42 232-273 1-42 (42)
71 PRK10049 pgaA outer membrane p 98.3 1.2E-05 2.6E-10 91.5 14.8 130 66-303 49-178 (765)
72 cd00189 TPR Tetratricopeptide 98.3 8.7E-06 1.9E-10 62.8 9.5 97 68-263 2-98 (100)
73 KOG1173 Anaphase-promoting com 98.3 6.3E-06 1.4E-10 88.8 11.4 172 66-305 312-485 (611)
74 PF12895 Apc3: Anaphase-promot 98.2 2.5E-06 5.5E-11 69.8 6.6 82 206-301 3-84 (84)
75 PF13432 TPR_16: Tetratricopep 98.2 1.7E-06 3.6E-11 67.1 4.8 60 237-304 1-60 (65)
76 KOG0550 Molecular chaperone (D 98.2 9.1E-06 2E-10 85.0 11.5 102 206-318 263-369 (486)
77 KOG1155 Anaphase-promoting com 98.1 2.8E-05 6.2E-10 82.4 12.6 161 69-305 333-496 (559)
78 KOG4234 TPR repeat-containing 98.1 6.5E-05 1.4E-09 72.5 13.9 66 53-121 82-147 (271)
79 PRK15179 Vi polysaccharide bio 98.1 4.8E-05 1E-09 85.9 15.1 136 64-303 46-182 (694)
80 KOG0543 FKBP-type peptidyl-pro 98.1 0.0001 2.3E-09 77.1 15.9 64 233-304 257-320 (397)
81 PF13374 TPR_10: Tetratricopep 98.1 7.5E-06 1.6E-10 57.5 5.0 42 65-106 1-42 (42)
82 KOG2002 TPR-containing nuclear 98.0 5.1E-05 1.1E-09 86.0 13.7 92 206-308 284-375 (1018)
83 KOG0548 Molecular co-chaperone 98.0 6.3E-05 1.4E-09 80.8 13.3 87 206-307 372-458 (539)
84 PF13414 TPR_11: TPR repeat; P 98.0 4.8E-05 1E-09 59.4 9.4 49 65-121 2-50 (69)
85 KOG2002 TPR-containing nuclear 98.0 5.2E-05 1.1E-09 86.0 13.1 216 65-308 306-529 (1018)
86 KOG1155 Anaphase-promoting com 98.0 5.4E-05 1.2E-09 80.3 12.4 83 230-320 395-483 (559)
87 PF12895 Apc3: Anaphase-promot 98.0 3.7E-05 8E-10 62.9 8.9 83 79-259 2-84 (84)
88 TIGR03302 OM_YfiO outer membra 98.0 6.6E-05 1.4E-09 72.2 11.8 92 206-306 47-146 (235)
89 cd00189 TPR Tetratricopeptide 98.0 1.8E-05 3.8E-10 61.0 6.3 84 206-304 14-97 (100)
90 PRK10049 pgaA outer membrane p 98.0 9.7E-05 2.1E-09 84.2 14.8 126 74-307 23-148 (765)
91 PRK10803 tol-pal system protei 98.0 4.7E-05 1E-09 76.4 10.8 95 206-305 144-247 (263)
92 KOG1839 Uncharacterized protei 98.0 6E-05 1.3E-09 87.8 12.6 164 64-311 971-1135(1236)
93 KOG2003 TPR repeat-containing 98.0 2.5E-05 5.5E-10 82.5 8.7 47 66-120 490-536 (840)
94 KOG0550 Molecular chaperone (D 98.0 0.00062 1.3E-08 71.6 18.7 79 230-312 246-324 (486)
95 PRK10747 putative protoheme IX 98.0 8.7E-05 1.9E-09 78.2 12.9 72 225-305 320-391 (398)
96 KOG0548 Molecular co-chaperone 97.9 0.00022 4.7E-09 76.8 15.4 66 49-123 206-272 (539)
97 KOG1129 TPR repeat-containing 97.9 9.6E-06 2.1E-10 82.9 4.8 83 217-304 342-424 (478)
98 PF09976 TPR_21: Tetratricopep 97.9 0.0002 4.4E-09 64.6 12.8 98 66-260 48-145 (145)
99 PLN02789 farnesyltranstransfer 97.9 0.00035 7.6E-09 72.1 16.0 40 74-121 45-84 (320)
100 KOG1129 TPR repeat-containing 97.9 3.4E-05 7.3E-10 79.0 7.4 159 70-304 227-387 (478)
101 KOG2076 RNA polymerase III tra 97.9 0.00034 7.5E-09 79.0 15.9 135 65-306 138-272 (895)
102 cd05804 StaR_like StaR_like; a 97.9 0.00051 1.1E-08 69.7 16.1 71 227-305 108-178 (355)
103 PF13429 TPR_15: Tetratricopep 97.8 0.00026 5.6E-09 70.3 13.2 87 206-307 160-246 (280)
104 PF13525 YfiO: Outer membrane 97.8 0.0021 4.6E-08 61.6 19.0 148 65-305 4-171 (203)
105 COG5010 TadD Flp pilus assembl 97.8 0.00017 3.8E-09 71.6 11.5 122 68-296 102-223 (257)
106 KOG4162 Predicted calmodulin-b 97.8 0.00031 6.6E-09 78.3 13.3 131 67-304 651-783 (799)
107 PF06552 TOM20_plant: Plant sp 97.7 0.0003 6.5E-09 66.8 11.1 35 82-124 7-41 (186)
108 KOG4648 Uncharacterized conser 97.7 0.00015 3.2E-09 74.8 9.4 52 62-121 93-144 (536)
109 PF13371 TPR_9: Tetratricopept 97.7 7.4E-05 1.6E-09 58.9 5.8 60 239-306 1-60 (73)
110 PRK10803 tol-pal system protei 97.7 0.00045 9.8E-09 69.4 12.8 104 68-264 144-248 (263)
111 PRK10866 outer membrane biogen 97.7 0.002 4.3E-08 63.9 17.1 63 231-298 173-235 (243)
112 KOG4340 Uncharacterized conser 97.7 0.00038 8.3E-09 70.8 11.9 156 66-302 44-205 (459)
113 PRK14720 transcript cleavage f 97.7 0.00053 1.2E-08 79.0 14.6 150 66-306 31-180 (906)
114 KOG1174 Anaphase-promoting com 97.7 0.00019 4.1E-09 75.5 9.8 82 216-306 421-502 (564)
115 KOG2003 TPR repeat-containing 97.7 0.00062 1.3E-08 72.3 13.4 89 207-310 471-559 (840)
116 COG5010 TadD Flp pilus assembl 97.7 0.00045 9.8E-09 68.7 11.7 83 206-303 114-196 (257)
117 TIGR00540 hemY_coli hemY prote 97.7 0.00095 2.1E-08 70.5 14.9 64 233-305 335-400 (409)
118 KOG4642 Chaperone-dependent E3 97.7 0.00022 4.7E-09 70.4 9.2 107 64-269 8-114 (284)
119 PRK14574 hmsH outer membrane p 97.7 0.00054 1.2E-08 78.9 13.9 84 217-311 120-205 (822)
120 PRK11906 transcriptional regul 97.6 0.00083 1.8E-08 71.9 13.7 148 68-310 257-407 (458)
121 PF13525 YfiO: Outer membrane 97.6 0.0044 9.5E-08 59.4 17.2 143 66-294 42-197 (203)
122 PF09986 DUF2225: Uncharacteri 97.6 0.00079 1.7E-08 65.7 11.8 100 205-304 90-194 (214)
123 KOG1586 Protein required for f 97.5 0.0035 7.6E-08 62.0 15.7 91 207-301 88-180 (288)
124 KOG2376 Signal recognition par 97.5 0.0029 6.4E-08 69.1 16.6 72 232-303 174-252 (652)
125 COG2956 Predicted N-acetylgluc 97.5 0.0016 3.6E-08 66.8 12.8 87 206-306 194-280 (389)
126 COG1729 Uncharacterized protei 97.5 0.002 4.3E-08 64.7 13.2 105 66-263 141-245 (262)
127 PRK10747 putative protoheme IX 97.5 0.0024 5.2E-08 67.4 14.6 76 230-305 260-358 (398)
128 PF00515 TPR_1: Tetratricopept 97.5 0.0002 4.3E-09 48.6 4.3 31 275-305 1-31 (34)
129 PF14559 TPR_19: Tetratricopep 97.5 0.00012 2.7E-09 56.8 3.7 56 244-307 2-57 (68)
130 PLN02789 farnesyltranstransfer 97.4 0.0045 9.8E-08 63.9 16.0 135 66-305 71-213 (320)
131 PF12688 TPR_5: Tetratrico pep 97.4 0.0032 6.9E-08 56.1 12.8 50 67-121 2-51 (120)
132 PF12688 TPR_5: Tetratrico pep 97.4 0.00068 1.5E-08 60.4 8.4 66 234-304 2-67 (120)
133 COG1729 Uncharacterized protei 97.4 0.00097 2.1E-08 66.9 10.0 93 207-304 144-244 (262)
134 KOG4555 TPR repeat-containing 97.4 0.0049 1.1E-07 56.2 13.1 144 47-285 23-171 (175)
135 TIGR00540 hemY_coli hemY prote 97.3 0.004 8.6E-08 65.8 14.6 135 63-303 81-215 (409)
136 PRK10866 outer membrane biogen 97.3 0.02 4.4E-07 56.7 18.7 52 65-121 31-82 (243)
137 PF13176 TPR_7: Tetratricopept 97.3 0.00043 9.4E-09 48.2 4.9 33 235-267 1-33 (36)
138 KOG0624 dsRNA-activated protei 97.3 0.023 5E-07 59.1 19.2 143 64-305 36-185 (504)
139 KOG3060 Uncharacterized conser 97.3 0.0023 5E-08 63.8 11.6 75 233-312 154-228 (289)
140 KOG0545 Aryl-hydrocarbon recep 97.3 0.0064 1.4E-07 60.6 14.2 37 62-98 174-210 (329)
141 PLN03098 LPA1 LOW PSII ACCUMUL 97.3 0.0011 2.4E-08 70.9 9.4 54 64-125 73-129 (453)
142 PF00515 TPR_1: Tetratricopept 97.3 0.00034 7.3E-09 47.4 3.7 33 233-265 1-33 (34)
143 COG4235 Cytochrome c biogenesi 97.2 0.003 6.4E-08 64.1 11.7 108 66-273 156-263 (287)
144 PF06552 TOM20_plant: Plant sp 97.2 0.0009 1.9E-08 63.6 7.4 89 214-310 6-108 (186)
145 PF07719 TPR_2: Tetratricopept 97.2 0.00053 1.2E-08 46.0 4.3 31 275-305 1-31 (34)
146 PF13432 TPR_16: Tetratricopep 97.2 0.002 4.4E-08 49.6 8.1 50 215-264 13-62 (65)
147 KOG4555 TPR repeat-containing 97.1 0.0027 5.9E-08 57.8 9.2 90 204-304 55-144 (175)
148 KOG1174 Anaphase-promoting com 97.1 0.0054 1.2E-07 64.8 12.2 173 66-312 232-405 (564)
149 KOG1941 Acetylcholine receptor 97.1 0.0048 1E-07 64.3 11.6 99 205-304 135-235 (518)
150 KOG1128 Uncharacterized conser 97.1 0.0032 6.9E-08 70.2 10.6 53 62-122 476-533 (777)
151 PF13176 TPR_7: Tetratricopept 97.0 0.0011 2.4E-08 46.2 4.5 30 277-306 1-30 (36)
152 KOG4234 TPR repeat-containing 97.0 0.0045 9.7E-08 60.1 10.0 79 232-313 94-172 (271)
153 PF07719 TPR_2: Tetratricopept 97.0 0.0016 3.5E-08 43.7 4.7 32 233-264 1-32 (34)
154 PRK14720 transcript cleavage f 97.0 0.0092 2E-07 69.1 13.5 134 67-304 117-283 (906)
155 PF13181 TPR_8: Tetratricopept 96.9 0.0014 3E-08 44.2 4.2 32 275-306 1-32 (34)
156 PF13181 TPR_8: Tetratricopept 96.9 0.0016 3.5E-08 43.9 4.4 32 233-264 1-32 (34)
157 PRK15331 chaperone protein Sic 96.9 0.003 6.5E-08 59.3 7.6 89 207-303 40-133 (165)
158 KOG1941 Acetylcholine receptor 96.9 0.032 6.9E-07 58.4 15.2 155 66-307 162-323 (518)
159 KOG2076 RNA polymerase III tra 96.9 0.022 4.7E-07 64.9 15.0 128 64-296 412-547 (895)
160 PF14559 TPR_19: Tetratricopep 96.8 0.0052 1.1E-07 47.5 7.2 41 76-124 1-41 (68)
161 PF13428 TPR_14: Tetratricopep 96.8 0.0028 6E-08 45.9 5.1 42 67-116 2-43 (44)
162 PF09295 ChAPs: ChAPs (Chs5p-A 96.8 0.018 3.9E-07 61.2 13.3 63 229-299 230-292 (395)
163 PF08631 SPO22: Meiosis protei 96.7 0.039 8.5E-07 55.5 14.6 141 76-304 3-150 (278)
164 PF12968 DUF3856: Domain of Un 96.7 0.021 4.5E-07 51.3 10.9 107 206-312 23-137 (144)
165 PF03704 BTAD: Bacterial trans 96.7 0.0094 2E-07 53.4 8.9 97 206-310 20-131 (146)
166 COG0457 NrfG FOG: TPR repeat [ 96.6 0.063 1.4E-06 46.5 13.4 173 66-307 59-234 (291)
167 PRK14574 hmsH outer membrane p 96.5 0.028 6.1E-07 65.0 13.4 127 66-300 102-228 (822)
168 KOG0543 FKBP-type peptidyl-pro 96.5 0.032 6.9E-07 58.9 12.4 82 231-312 206-294 (397)
169 COG4785 NlpI Lipoprotein NlpI, 96.5 0.036 7.9E-07 54.6 11.6 54 63-124 62-115 (297)
170 COG0457 NrfG FOG: TPR repeat [ 96.4 0.12 2.5E-06 44.8 13.8 95 208-307 104-199 (291)
171 KOG2376 Signal recognition par 96.4 0.19 4.2E-06 55.4 17.6 81 205-289 188-276 (652)
172 COG2956 Predicted N-acetylgluc 96.4 0.17 3.8E-06 52.4 16.2 70 229-306 176-245 (389)
173 KOG1128 Uncharacterized conser 96.3 0.0097 2.1E-07 66.5 7.8 85 206-305 499-583 (777)
174 PRK15331 chaperone protein Sic 96.3 0.052 1.1E-06 51.0 11.4 101 62-261 33-133 (165)
175 PF13512 TPR_18: Tetratricopep 96.3 0.03 6.6E-07 51.4 9.6 56 230-290 44-99 (142)
176 PF13428 TPR_14: Tetratricopep 96.2 0.0068 1.5E-07 43.8 4.1 42 234-283 2-43 (44)
177 PF12862 Apc5: Anaphase-promot 96.2 0.038 8.2E-07 46.6 9.2 68 241-308 6-74 (94)
178 PF12569 NARP1: NMDA receptor- 96.2 0.061 1.3E-06 59.1 13.2 139 66-307 194-337 (517)
179 KOG0551 Hsp90 co-chaperone CNS 96.2 0.18 3.8E-06 52.4 15.4 106 65-265 80-185 (390)
180 KOG1585 Protein required for f 96.2 0.43 9.2E-06 47.9 17.4 94 206-304 85-179 (308)
181 PF12569 NARP1: NMDA receptor- 96.1 0.18 3.9E-06 55.6 16.2 65 232-304 193-257 (517)
182 PF13371 TPR_9: Tetratricopept 96.1 0.017 3.7E-07 45.2 6.1 52 206-264 9-60 (73)
183 KOG4642 Chaperone-dependent E3 96.1 0.019 4.1E-07 57.1 7.5 85 215-307 26-110 (284)
184 KOG1156 N-terminal acetyltrans 95.9 0.037 8E-07 61.3 9.7 118 67-291 8-125 (700)
185 KOG1586 Protein required for f 95.9 0.085 1.8E-06 52.5 10.9 98 206-306 28-145 (288)
186 COG4783 Putative Zn-dependent 95.8 0.12 2.5E-06 55.9 12.7 130 66-302 306-435 (484)
187 COG4783 Putative Zn-dependent 95.8 0.18 3.9E-06 54.5 13.7 42 72-121 346-387 (484)
188 PF12862 Apc5: Anaphase-promot 95.8 0.12 2.6E-06 43.5 10.2 77 206-284 12-90 (94)
189 KOG3617 WD40 and TPR repeat-co 95.7 0.36 7.7E-06 55.2 16.2 56 63-121 816-871 (1416)
190 KOG1127 TPR repeat-containing 95.7 0.1 2.2E-06 60.5 12.2 54 60-121 447-505 (1238)
191 COG4105 ComL DNA uptake lipopr 95.7 0.56 1.2E-05 47.1 16.1 174 65-295 33-224 (254)
192 PLN03081 pentatricopeptide (PP 95.6 0.34 7.5E-06 54.7 16.3 78 216-303 377-454 (697)
193 PF09986 DUF2225: Uncharacteri 95.6 0.2 4.4E-06 48.9 12.4 109 78-265 89-197 (214)
194 PF13431 TPR_17: Tetratricopep 95.5 0.0066 1.4E-07 42.0 1.4 33 255-295 1-33 (34)
195 PLN03218 maturation of RBCL 1; 95.5 0.34 7.3E-06 57.8 16.2 86 206-304 663-748 (1060)
196 PF13431 TPR_17: Tetratricopep 95.5 0.0097 2.1E-07 41.1 2.1 30 88-125 1-30 (34)
197 KOG0495 HAT repeat protein [RN 95.4 0.098 2.1E-06 58.3 10.5 86 206-307 632-717 (913)
198 KOG1585 Protein required for f 95.4 0.38 8.3E-06 48.3 13.7 95 206-303 124-218 (308)
199 COG3118 Thioredoxin domain-con 95.4 0.31 6.7E-06 49.9 13.2 131 67-272 135-272 (304)
200 KOG0624 dsRNA-activated protei 95.4 0.16 3.4E-06 53.1 11.2 82 206-302 169-250 (504)
201 smart00028 TPR Tetratricopepti 95.3 0.015 3.2E-07 36.2 2.4 29 276-304 2-30 (34)
202 KOG0551 Hsp90 co-chaperone CNS 95.3 0.12 2.6E-06 53.6 10.1 97 203-307 85-185 (390)
203 smart00028 TPR Tetratricopepti 95.3 0.021 4.5E-07 35.4 3.1 30 234-263 2-31 (34)
204 KOG1127 TPR repeat-containing 95.2 0.21 4.4E-06 58.0 12.6 145 68-312 564-708 (1238)
205 COG4235 Cytochrome c biogenesi 95.2 0.25 5.5E-06 50.4 12.1 83 208-305 172-257 (287)
206 PLN03218 maturation of RBCL 1; 95.2 0.51 1.1E-05 56.3 16.3 167 66-303 614-782 (1060)
207 PLN03081 pentatricopeptide (PP 95.2 0.31 6.8E-06 55.0 14.1 60 233-300 494-553 (697)
208 PF04184 ST7: ST7 protein; In 95.2 0.39 8.5E-06 52.3 13.8 61 233-299 259-319 (539)
209 PF08631 SPO22: Meiosis protei 95.1 0.21 4.5E-06 50.3 11.2 88 205-292 6-101 (278)
210 PF03704 BTAD: Bacterial trans 95.1 1.5 3.2E-05 39.1 15.5 68 206-280 76-144 (146)
211 PF13174 TPR_6: Tetratricopept 95.0 0.022 4.7E-07 37.7 2.7 29 276-304 1-29 (33)
212 KOG4162 Predicted calmodulin-b 95.0 0.15 3.3E-06 57.6 10.5 103 66-265 684-786 (799)
213 PRK11906 transcriptional regul 95.0 0.29 6.3E-06 52.8 12.2 79 208-300 354-432 (458)
214 PF09295 ChAPs: ChAPs (Chs5p-A 94.9 0.26 5.6E-06 52.6 11.5 45 207-258 249-293 (395)
215 PF02259 FAT: FAT domain; Int 94.6 0.98 2.1E-05 45.6 14.7 51 230-288 249-305 (352)
216 KOG2471 TPR repeat-containing 94.4 0.027 5.9E-07 60.7 2.8 78 230-307 278-367 (696)
217 KOG1070 rRNA processing protei 94.3 0.36 7.8E-06 57.8 11.7 85 212-312 1517-1603(1710)
218 PF10602 RPN7: 26S proteasome 94.3 0.34 7.4E-06 45.8 9.8 88 213-306 17-104 (177)
219 PF12968 DUF3856: Domain of Un 94.1 4.3 9.3E-05 36.8 15.9 120 65-268 6-135 (144)
220 KOG0376 Serine-threonine phosp 94.1 0.044 9.6E-07 58.9 3.8 101 65-264 3-103 (476)
221 PF13512 TPR_18: Tetratricopep 94.1 0.95 2.1E-05 41.7 11.8 51 66-121 10-60 (142)
222 PF10516 SHNi-TPR: SHNi-TPR; 93.8 0.14 3E-06 36.6 4.6 37 66-102 1-37 (38)
223 KOG3785 Uncharacterized conser 93.8 0.63 1.4E-05 49.0 11.1 47 71-125 62-108 (557)
224 PF10602 RPN7: 26S proteasome 93.7 1.9 4.1E-05 40.8 13.7 91 206-302 50-140 (177)
225 PLN03077 Protein ECB2; Provisi 93.7 2.1 4.6E-05 49.5 16.7 49 206-259 603-651 (857)
226 cd02684 MIT_2 MIT: domain cont 93.7 0.53 1.2E-05 38.5 8.5 60 62-121 2-62 (75)
227 COG3071 HemY Uncharacterized e 93.6 0.32 6.9E-06 51.4 8.8 65 230-303 325-389 (400)
228 cd09034 BRO1_Alix_like Protein 93.6 10 0.00022 39.1 21.4 37 273-309 249-285 (345)
229 KOG1156 N-terminal acetyltrans 93.5 0.23 5E-06 55.2 8.0 74 229-310 37-110 (700)
230 COG4785 NlpI Lipoprotein NlpI, 93.5 0.11 2.4E-06 51.3 4.9 81 211-299 77-157 (297)
231 KOG4648 Uncharacterized conser 93.5 0.18 3.8E-06 52.7 6.7 82 216-305 114-195 (536)
232 PF04212 MIT: MIT (microtubule 93.4 0.72 1.6E-05 36.6 8.7 60 63-122 2-62 (69)
233 cd02678 MIT_VPS4 MIT: domain c 93.3 0.71 1.5E-05 37.5 8.7 60 63-122 3-63 (75)
234 PF10300 DUF3808: Protein of u 93.1 1.8 3.9E-05 47.1 14.1 91 206-306 281-371 (468)
235 PF10300 DUF3808: Protein of u 93.0 0.27 5.9E-06 53.4 7.6 87 206-303 247-333 (468)
236 PF13174 TPR_6: Tetratricopept 93.0 0.15 3.3E-06 33.5 3.6 30 234-263 1-30 (33)
237 COG4700 Uncharacterized protei 92.7 2.6 5.7E-05 41.0 12.7 61 231-300 158-218 (251)
238 cd09240 BRO1_Alix Protein-inte 92.7 4.7 0.0001 42.2 16.0 34 274-307 254-287 (346)
239 cd09242 BRO1_ScBro1_like Prote 92.5 6.3 0.00014 41.2 16.6 36 273-308 242-277 (348)
240 PF10255 Paf67: RNA polymerase 92.4 0.16 3.5E-06 54.2 4.7 72 235-307 124-196 (404)
241 cd02683 MIT_1 MIT: domain cont 92.2 1 2.3E-05 37.0 8.3 59 64-122 4-63 (77)
242 KOG4340 Uncharacterized conser 92.2 1.7 3.7E-05 44.9 11.4 32 273-304 142-173 (459)
243 PF04733 Coatomer_E: Coatomer 92.1 0.81 1.8E-05 46.6 9.3 87 206-300 167-261 (290)
244 cd02681 MIT_calpain7_1 MIT: do 92.0 1.1 2.3E-05 37.0 8.1 55 65-121 5-61 (76)
245 KOG0495 HAT repeat protein [RN 92.0 1.4 3E-05 49.6 11.2 81 206-301 665-745 (913)
246 KOG1070 rRNA processing protei 91.9 1.4 3.1E-05 53.0 11.9 68 44-121 1503-1577(1710)
247 PF10952 DUF2753: Protein of u 91.9 1.1 2.4E-05 40.5 8.6 69 235-303 3-78 (140)
248 cd09241 BRO1_ScRim20-like Prot 91.9 5.7 0.00012 41.7 15.5 36 273-308 235-270 (355)
249 KOG1915 Cell cycle control pro 91.8 2.7 5.8E-05 45.9 12.8 167 77-307 377-588 (677)
250 PRK10153 DNA-binding transcrip 91.7 0.5 1.1E-05 52.1 7.7 93 215-307 358-452 (517)
251 smart00745 MIT Microtubule Int 91.4 1.8 3.8E-05 34.9 8.8 61 62-122 4-65 (77)
252 KOG2300 Uncharacterized conser 91.4 4.8 0.0001 44.1 14.2 142 64-297 5-149 (629)
253 cd02656 MIT MIT: domain contai 91.4 1.8 4E-05 34.8 8.9 60 63-122 3-63 (75)
254 PLN03077 Protein ECB2; Provisi 91.3 5.4 0.00012 46.3 15.9 63 233-302 554-616 (857)
255 PF00244 14-3-3: 14-3-3 protei 91.0 0.94 2E-05 44.9 8.2 73 232-304 122-198 (236)
256 PF14853 Fis1_TPR_C: Fis1 C-te 90.7 0.81 1.8E-05 35.1 5.7 30 276-305 2-31 (53)
257 cd02682 MIT_AAA_Arch MIT: doma 90.5 2.7 5.8E-05 34.7 9.0 37 274-310 5-41 (75)
258 smart00101 14_3_3 14-3-3 homol 90.4 2 4.4E-05 43.0 9.9 74 232-305 124-201 (244)
259 PF11817 Foie-gras_1: Foie gra 90.3 4.3 9.2E-05 40.2 12.2 91 205-298 151-241 (247)
260 COG4105 ComL DNA uptake lipopr 90.2 22 0.00048 35.8 17.5 89 206-303 85-195 (254)
261 KOG2471 TPR repeat-containing 90.1 1.3 2.8E-05 48.4 8.6 49 231-287 333-381 (696)
262 KOG0376 Serine-threonine phosp 90.0 0.14 3.1E-06 55.2 1.4 85 215-307 20-104 (476)
263 KOG2561 Adaptor protein NUB1, 89.7 7.8 0.00017 41.9 13.9 35 233-267 267-301 (568)
264 KOG1550 Extracellular protein 89.7 5.6 0.00012 44.2 13.7 80 207-305 308-394 (552)
265 PF10345 Cohesin_load: Cohesin 89.6 16 0.00035 40.9 17.4 97 206-306 74-170 (608)
266 PF04184 ST7: ST7 protein; In 89.5 1.5 3.2E-05 48.0 8.5 99 205-305 172-289 (539)
267 cd02680 MIT_calpain7_2 MIT: do 89.2 2.2 4.7E-05 35.2 7.5 41 62-102 2-42 (75)
268 cd09239 BRO1_HD-PTP_like Prote 88.9 33 0.00072 36.2 18.1 36 273-308 250-285 (361)
269 KOG2709 Uncharacterized conser 88.8 1.4 2.9E-05 47.2 7.5 143 275-453 22-175 (560)
270 PF04212 MIT: MIT (microtubule 88.6 5.4 0.00012 31.5 9.3 37 275-311 5-41 (69)
271 PF02259 FAT: FAT domain; Int 88.5 9.4 0.0002 38.5 13.4 100 206-308 160-291 (352)
272 KOG2047 mRNA splicing factor [ 88.3 6.3 0.00014 44.5 12.4 97 207-306 485-581 (835)
273 cd02677 MIT_SNX15 MIT: domain 87.8 4.1 8.8E-05 33.4 8.3 57 63-119 3-60 (75)
274 KOG1308 Hsp70-interacting prot 87.4 0.24 5.1E-06 51.7 0.9 52 62-121 110-161 (377)
275 PF08626 TRAPPC9-Trs120: Trans 87.2 54 0.0012 40.0 20.7 211 59-306 235-476 (1185)
276 cd02683 MIT_1 MIT: domain cont 87.0 5.1 0.00011 32.9 8.4 37 275-311 6-42 (77)
277 KOG3616 Selective LIM binding 86.9 12 0.00026 43.1 13.6 68 229-298 768-847 (1636)
278 PF07721 TPR_4: Tetratricopept 86.8 0.6 1.3E-05 30.1 2.3 25 276-300 2-26 (26)
279 PF04910 Tcf25: Transcriptiona 86.7 45 0.00098 35.1 17.9 96 215-316 123-234 (360)
280 cd09246 BRO1_Alix_like_1 Prote 86.7 45 0.00097 35.0 17.5 33 273-305 245-277 (353)
281 PF05843 Suf: Suppressor of fo 86.4 3.4 7.3E-05 41.7 8.6 82 215-304 17-99 (280)
282 COG4700 Uncharacterized protei 86.4 2.3 5E-05 41.4 6.9 74 233-306 89-191 (251)
283 COG1382 GimC Prefoldin, chaper 86.4 16 0.00035 32.8 11.7 75 234-314 17-91 (119)
284 KOG1118 Lysophosphatidic acid 86.3 45 0.00098 34.7 16.3 53 206-258 79-131 (366)
285 PF07721 TPR_4: Tetratricopept 86.1 0.84 1.8E-05 29.4 2.7 24 234-257 2-25 (26)
286 KOG3617 WD40 and TPR repeat-co 86.0 2.2 4.8E-05 49.2 7.5 76 208-301 809-884 (1416)
287 KOG3785 Uncharacterized conser 85.8 1.4 3E-05 46.5 5.5 83 206-302 36-118 (557)
288 KOG3081 Vesicle coat complex C 85.3 17 0.00036 37.2 12.6 85 206-298 173-264 (299)
289 PF03097 BRO1: BRO1-like domai 85.2 9.2 0.0002 39.9 11.5 37 274-310 238-274 (377)
290 KOG2300 Uncharacterized conser 84.9 29 0.00063 38.3 14.9 129 205-375 336-467 (629)
291 PF12309 KBP_C: KIF-1 binding 84.6 59 0.0013 34.5 19.9 114 231-373 227-371 (371)
292 cd02682 MIT_AAA_Arch MIT: doma 84.5 8.5 0.00019 31.7 8.5 48 64-111 4-52 (75)
293 KOG4814 Uncharacterized conser 84.1 1.7 3.7E-05 48.8 5.5 68 236-305 357-424 (872)
294 KOG0545 Aryl-hydrocarbon recep 84.0 3.5 7.6E-05 41.6 7.2 88 230-317 175-272 (329)
295 KOG3616 Selective LIM binding 83.9 33 0.00072 39.7 15.2 73 232-307 660-738 (1636)
296 PF09670 Cas_Cas02710: CRISPR- 83.9 47 0.001 35.2 16.2 33 63-95 128-160 (379)
297 PHA02537 M terminase endonucle 83.7 13 0.00027 37.1 11.0 113 204-319 95-227 (230)
298 COG2976 Uncharacterized protei 83.7 10 0.00022 37.0 10.0 87 206-305 103-189 (207)
299 PF10345 Cohesin_load: Cohesin 83.6 82 0.0018 35.4 22.5 154 63-307 56-211 (608)
300 PF05278 PEARLI-4: Arabidopsis 83.6 24 0.00051 35.9 12.9 137 205-374 89-242 (269)
301 PF04781 DUF627: Protein of un 83.4 24 0.00053 31.2 11.4 46 72-122 2-47 (111)
302 KOG3364 Membrane protein invol 82.8 7 0.00015 36.1 8.0 70 232-305 31-101 (149)
303 smart00745 MIT Microtubule Int 81.8 10 0.00022 30.5 8.0 35 275-309 8-42 (77)
304 cd02678 MIT_VPS4 MIT: domain c 81.5 12 0.00026 30.3 8.3 37 275-311 6-42 (75)
305 cd02679 MIT_spastin MIT: domai 81.4 2.8 6.2E-05 34.8 4.6 36 273-308 6-41 (79)
306 PF04733 Coatomer_E: Coatomer 81.3 2.4 5.1E-05 43.3 5.0 69 240-316 172-242 (290)
307 cd02656 MIT MIT: domain contai 80.8 11 0.00024 30.2 7.9 34 276-309 7-40 (75)
308 COG0790 FOG: TPR repeat, SEL1 80.7 62 0.0013 32.0 15.6 63 232-305 186-267 (292)
309 KOG1308 Hsp70-interacting prot 80.2 0.49 1.1E-05 49.3 -0.3 72 225-304 140-211 (377)
310 COG2909 MalT ATP-dependent tra 79.9 54 0.0012 38.5 15.5 70 233-306 580-649 (894)
311 KOG3060 Uncharacterized conser 79.8 10 0.00022 38.5 8.6 90 207-304 94-183 (289)
312 COG0790 FOG: TPR repeat, SEL1 79.4 38 0.00083 33.5 13.0 85 206-306 127-222 (292)
313 cd02681 MIT_calpain7_1 MIT: do 79.2 27 0.00059 28.7 9.7 33 233-265 6-38 (76)
314 cd00890 Prefoldin Prefoldin is 77.5 3.6 7.8E-05 36.1 4.4 80 238-317 14-111 (129)
315 PF10373 EST1_DNA_bind: Est1 D 77.5 4 8.6E-05 40.0 5.2 59 252-318 1-62 (278)
316 PF04910 Tcf25: Transcriptiona 77.4 19 0.0004 38.0 10.4 98 206-303 8-131 (360)
317 PF07720 TPR_3: Tetratricopept 76.8 6.6 0.00014 27.6 4.7 29 67-95 2-32 (36)
318 KOG0508 Ankyrin repeat protein 76.6 1.8 3.8E-05 47.0 2.5 73 216-288 319-392 (615)
319 cd00632 Prefoldin_beta Prefold 76.3 49 0.0011 28.4 11.3 67 241-313 17-83 (105)
320 PF05843 Suf: Suppressor of fo 76.3 27 0.00058 35.2 10.9 90 206-307 50-139 (280)
321 PF04781 DUF627: Protein of un 76.0 9.6 0.00021 33.8 6.5 94 206-304 10-107 (111)
322 COG3629 DnrI DNA-binding trans 75.4 19 0.00041 36.9 9.5 66 231-304 151-216 (280)
323 KOG2796 Uncharacterized conser 74.6 32 0.0007 35.3 10.6 65 232-304 251-315 (366)
324 cd02680 MIT_calpain7_2 MIT: do 74.5 20 0.00043 29.5 7.6 28 280-307 11-38 (75)
325 KOG4507 Uncharacterized conser 74.3 5.9 0.00013 44.3 5.8 63 235-305 644-706 (886)
326 COG3071 HemY Uncharacterized e 74.2 44 0.00095 35.8 11.9 34 232-265 360-393 (400)
327 PF05377 FlaC_arch: Flagella a 73.6 7.3 0.00016 30.3 4.5 28 347-374 15-42 (55)
328 PF14853 Fis1_TPR_C: Fis1 C-te 73.0 7.5 0.00016 29.8 4.5 32 234-265 2-33 (53)
329 COG3118 Thioredoxin domain-con 72.8 26 0.00056 36.2 9.6 87 205-298 147-259 (304)
330 PF11207 DUF2989: Protein of u 72.6 16 0.00034 35.7 7.7 74 216-294 123-197 (203)
331 cd09244 BRO1_Rhophilin Protein 72.4 1.3E+02 0.0029 31.7 15.8 35 274-308 243-277 (350)
332 KOG1550 Extracellular protein 72.2 10 0.00022 42.1 7.2 88 204-303 261-356 (552)
333 cd02679 MIT_spastin MIT: domai 71.7 25 0.00054 29.2 7.7 36 235-270 10-45 (79)
334 KOG2610 Uncharacterized conser 71.3 43 0.00093 35.5 10.9 58 232-297 174-231 (491)
335 PF11817 Foie-gras_1: Foie gra 70.9 15 0.00031 36.5 7.3 55 250-306 155-209 (247)
336 KOG4507 Uncharacterized conser 70.7 32 0.00069 38.8 10.2 50 69-124 215-265 (886)
337 PRK03947 prefoldin subunit alp 69.5 11 0.00023 34.0 5.6 72 241-314 24-115 (140)
338 PF05053 Menin: Menin; InterP 69.4 44 0.00094 37.5 11.0 85 217-306 263-349 (618)
339 PF08424 NRDE-2: NRDE-2, neces 69.3 1.4E+02 0.0031 30.7 15.4 71 236-306 105-185 (321)
340 COG4976 Predicted methyltransf 68.6 5.3 0.00012 40.0 3.6 59 242-308 4-62 (287)
341 cd09247 BRO1_Alix_like_2 Prote 68.2 34 0.00074 35.8 9.7 33 273-305 251-283 (346)
342 PF10579 Rapsyn_N: Rapsyn N-te 68.0 24 0.00052 29.5 6.7 58 64-126 4-61 (80)
343 KOG2047 mRNA splicing factor [ 67.5 15 0.00032 41.7 7.0 92 215-307 403-502 (835)
344 KOG2709 Uncharacterized conser 67.3 10 0.00022 40.8 5.5 79 232-320 21-103 (560)
345 COG3947 Response regulator con 66.7 30 0.00065 35.9 8.5 68 235-310 281-348 (361)
346 cd02684 MIT_2 MIT: domain cont 66.6 52 0.0011 26.8 8.5 36 276-311 7-42 (75)
347 PF14561 TPR_20: Tetratricopep 66.4 13 0.00029 31.2 5.1 35 229-263 18-52 (90)
348 PF14561 TPR_20: Tetratricopep 66.2 21 0.00045 30.1 6.3 54 66-119 22-90 (90)
349 COG2976 Uncharacterized protei 65.6 32 0.0007 33.6 8.1 65 231-300 87-151 (207)
350 PF10579 Rapsyn_N: Rapsyn N-te 64.8 25 0.00054 29.4 6.2 53 217-269 24-79 (80)
351 COG2909 MalT ATP-dependent tra 64.6 3E+02 0.0065 32.7 16.8 79 206-289 472-551 (894)
352 KOG0508 Ankyrin repeat protein 64.3 3.3 7.1E-05 45.1 1.3 107 206-312 260-374 (615)
353 KOG2460 Signal recognition par 64.3 26 0.00056 38.8 8.0 94 248-375 379-488 (593)
354 PF08311 Mad3_BUB1_I: Mad3/BUB 63.7 34 0.00074 30.5 7.6 79 212-302 46-126 (126)
355 PF09311 Rab5-bind: Rabaptin-l 63.5 21 0.00045 34.0 6.4 47 61-107 135-181 (181)
356 PRK13184 pknD serine/threonine 63.5 25 0.00053 41.8 8.3 100 204-305 480-582 (932)
357 smart00671 SEL1 Sel1-like repe 63.1 12 0.00026 24.7 3.6 28 276-303 2-33 (36)
358 cd00584 Prefoldin_alpha Prefol 63.0 19 0.00041 31.8 5.8 79 238-316 14-110 (129)
359 KOG3783 Uncharacterized conser 63.0 25 0.00054 39.0 7.7 74 231-305 447-521 (546)
360 KOG2053 Mitochondrial inherita 62.4 23 0.00049 41.4 7.4 70 229-306 39-108 (932)
361 TIGR00293 prefoldin, archaeal 61.9 6.3 0.00014 34.8 2.5 45 241-288 17-61 (126)
362 PF08238 Sel1: Sel1 repeat; I 61.8 13 0.00027 25.2 3.5 29 275-303 1-36 (39)
363 PF12739 TRAPPC-Trs85: ER-Golg 61.3 2.3E+02 0.005 30.3 18.3 49 70-121 212-261 (414)
364 KOG1915 Cell cycle control pro 60.8 48 0.001 36.7 9.1 78 215-300 89-166 (677)
365 TIGR03504 FimV_Cterm FimV C-te 59.4 16 0.00034 27.0 3.8 25 70-94 3-27 (44)
366 TIGR03504 FimV_Cterm FimV C-te 58.5 13 0.00028 27.4 3.2 26 236-261 2-27 (44)
367 PF04053 Coatomer_WDAD: Coatom 57.7 21 0.00046 38.8 6.0 54 206-264 323-378 (443)
368 PF07720 TPR_3: Tetratricopept 57.3 24 0.00053 24.8 4.3 24 276-299 2-25 (36)
369 PF15015 NYD-SP12_N: Spermatog 57.2 51 0.0011 35.9 8.5 60 237-304 232-291 (569)
370 KOG4603 TBP-1 interacting prot 57.1 38 0.00082 32.4 6.7 23 249-271 42-64 (201)
371 KOG3364 Membrane protein invol 56.8 32 0.00068 31.9 6.0 59 206-264 34-102 (149)
372 KOG4814 Uncharacterized conser 56.5 47 0.001 37.8 8.4 71 229-307 390-460 (872)
373 KOG0250 DNA repair protein RAD 56.4 2E+02 0.0043 34.8 13.7 33 346-378 401-433 (1074)
374 PF09613 HrpB1_HrpK: Bacterial 56.0 60 0.0013 30.6 8.0 70 207-291 25-94 (160)
375 PF15469 Sec5: Exocyst complex 55.8 43 0.00093 31.4 7.1 50 206-267 71-120 (182)
376 PF07079 DUF1347: Protein of u 55.7 30 0.00065 37.8 6.6 70 233-311 460-545 (549)
377 COG5159 RPN6 26S proteasome re 55.6 1.7E+02 0.0037 30.6 11.6 65 235-301 127-191 (421)
378 PRK13184 pknD serine/threonine 55.5 1.3E+02 0.0028 35.9 12.4 142 69-307 478-623 (932)
379 KOG2422 Uncharacterized conser 54.2 3.4E+02 0.0075 30.8 14.4 94 206-314 356-458 (665)
380 PRK10941 hypothetical protein; 53.9 87 0.0019 31.8 9.4 66 232-305 180-245 (269)
381 cd02677 MIT_SNX15 MIT: domain 53.4 23 0.00049 29.0 4.2 36 276-311 7-42 (75)
382 PF10805 DUF2730: Protein of u 53.1 1.5E+02 0.0033 25.7 10.2 60 292-374 34-93 (106)
383 cd09034 BRO1_Alix_like Protein 52.6 2.8E+02 0.006 28.5 13.9 36 231-266 249-284 (345)
384 KOG0738 AAA+-type ATPase [Post 52.4 47 0.001 35.9 7.3 35 278-312 9-43 (491)
385 KOG4014 Uncharacterized conser 51.4 1.6E+02 0.0035 28.9 10.1 71 206-288 87-157 (248)
386 cd09243 BRO1_Brox_like Protein 50.0 69 0.0015 33.9 8.2 36 273-308 246-281 (353)
387 PF14863 Alkyl_sulf_dimr: Alky 49.7 75 0.0016 29.2 7.4 53 66-126 70-122 (141)
388 PF10168 Nup88: Nuclear pore c 49.2 1.4E+02 0.003 34.6 11.1 26 351-376 598-623 (717)
389 PF12795 MscS_porin: Mechanose 49.0 2E+02 0.0043 28.3 10.9 50 250-321 17-66 (240)
390 PF12854 PPR_1: PPR repeat 48.6 30 0.00066 23.5 3.6 26 233-258 7-32 (34)
391 PF06120 Phage_HK97_TLTM: Tail 48.0 74 0.0016 33.0 7.8 65 291-376 40-104 (301)
392 COG1730 GIM5 Predicted prefold 47.2 35 0.00076 31.6 4.8 27 244-270 27-53 (145)
393 PF12753 Nro1: Nuclear pore co 47.2 19 0.00041 38.5 3.5 55 251-307 329-387 (404)
394 PF07544 Med9: RNA polymerase 47.1 1.7E+02 0.0036 24.3 8.8 28 294-321 22-49 (83)
395 PF13805 Pil1: Eisosome compon 47.0 3.4E+02 0.0073 27.8 15.3 83 210-320 76-158 (271)
396 smart00386 HAT HAT (Half-A-TPR 46.8 41 0.00089 21.1 4.0 31 80-118 1-31 (33)
397 KOG2561 Adaptor protein NUB1, 46.6 1.9E+02 0.004 31.8 10.7 97 207-307 178-299 (568)
398 KOG2114 Vacuolar assembly/sort 46.4 95 0.0021 36.4 9.0 50 213-262 348-397 (933)
399 PF04871 Uso1_p115_C: Uso1 / p 46.3 1.4E+02 0.0031 27.1 8.7 27 349-375 80-106 (136)
400 PF12739 TRAPPC-Trs85: ER-Golg 46.2 84 0.0018 33.6 8.3 71 235-307 210-287 (414)
401 TIGR02710 CRISPR-associated pr 46.1 4.1E+02 0.0088 28.5 13.8 31 65-95 129-159 (380)
402 KOG2041 WD40 repeat protein [G 46.1 1.1E+02 0.0025 35.3 9.3 67 230-296 793-886 (1189)
403 KOG1920 IkappaB kinase complex 45.6 5E+02 0.011 32.0 14.8 58 238-296 957-1020(1265)
404 PRK13729 conjugal transfer pil 45.1 2.2E+02 0.0048 31.4 11.2 11 442-452 191-201 (475)
405 PTZ00009 heat shock 70 kDa pro 45.0 2.5E+02 0.0053 32.0 12.2 42 349-397 570-619 (653)
406 KOG0276 Vesicle coat complex C 44.9 63 0.0014 36.6 7.1 87 204-295 640-728 (794)
407 PRK10869 recombination and rep 44.8 2.6E+02 0.0055 31.3 12.1 25 349-373 344-368 (553)
408 cd07613 BAR_Endophilin_A1 The 44.7 2.8E+02 0.0061 27.5 11.0 171 60-319 38-223 (223)
409 PRK13182 racA polar chromosome 43.9 1.7E+02 0.0036 28.0 9.0 70 291-380 83-152 (175)
410 PF02064 MAS20: MAS20 protein 43.2 79 0.0017 28.4 6.4 36 60-95 57-92 (121)
411 PF09670 Cas_Cas02710: CRISPR- 42.8 2.1E+02 0.0045 30.4 10.6 63 237-305 135-199 (379)
412 KOG0546 HSP90 co-chaperone CPR 42.7 27 0.00058 37.0 3.7 63 233-303 275-337 (372)
413 KOG1310 WD40 repeat protein [G 42.6 50 0.0011 36.9 5.8 81 218-306 393-476 (758)
414 PF02996 Prefoldin: Prefoldin 42.5 56 0.0012 28.2 5.3 20 248-267 14-33 (120)
415 PF04102 SlyX: SlyX; InterPro 42.4 1.1E+02 0.0024 24.5 6.5 26 348-373 27-52 (69)
416 COG3014 Uncharacterized protei 42.4 1.5E+02 0.0033 31.5 9.1 77 240-316 65-166 (449)
417 PF02561 FliS: Flagellar prote 42.1 96 0.0021 27.3 6.8 44 63-106 26-69 (122)
418 PF07926 TPR_MLP1_2: TPR/MLP1/ 41.5 2.6E+02 0.0057 25.0 10.2 24 352-375 97-120 (132)
419 KOG1310 WD40 repeat protein [G 41.4 1.1E+02 0.0025 34.2 8.3 50 64-121 372-421 (758)
420 TIGR02561 HrpB1_HrpK type III 41.4 95 0.0021 29.1 6.7 71 206-291 24-94 (153)
421 PRK04654 sec-independent trans 41.2 3.1E+02 0.0068 27.1 10.5 29 289-317 23-51 (214)
422 COG1579 Zn-ribbon protein, pos 41.2 3.9E+02 0.0084 26.9 14.3 29 291-319 87-115 (239)
423 PF12063 DUF3543: Domain of un 41.1 3.8E+02 0.0082 26.7 12.8 100 242-374 114-235 (238)
424 PRK11637 AmiB activator; Provi 40.9 4.8E+02 0.01 27.9 19.4 7 418-424 298-304 (428)
425 PF12309 KBP_C: KIF-1 binding 40.7 4.7E+02 0.01 27.8 17.2 43 79-121 188-235 (371)
426 cd09245 BRO1_UmRIM23-like Prot 40.7 93 0.002 33.6 7.6 34 273-306 294-327 (413)
427 PRK10869 recombination and rep 40.0 2.7E+02 0.0059 31.1 11.4 39 276-314 272-310 (553)
428 COG3883 Uncharacterized protei 39.7 1.7E+02 0.0036 29.9 8.7 62 292-378 37-98 (265)
429 PF01920 Prefoldin_2: Prefoldi 39.0 27 0.00058 29.4 2.6 75 234-314 9-83 (106)
430 PF09712 PHA_synth_III_E: Poly 39.0 4.5E+02 0.0097 27.0 12.6 22 352-373 271-292 (293)
431 PF07106 TBPIP: Tat binding pr 38.6 1.8E+02 0.0039 27.0 8.4 57 295-374 81-137 (169)
432 PF05010 TACC: Transforming ac 38.5 3.3E+02 0.0072 26.7 10.4 23 347-369 183-205 (207)
433 PF15015 NYD-SP12_N: Spermatog 37.9 1.2E+02 0.0026 33.1 7.7 66 239-304 182-257 (569)
434 PF01535 PPR: PPR repeat; Int 37.6 54 0.0012 20.5 3.4 26 235-260 2-27 (31)
435 KOG3824 Huntingtin interacting 37.2 42 0.0009 35.2 4.0 52 245-304 128-179 (472)
436 PF05168 HEPN: HEPN domain; I 36.9 1E+02 0.0023 25.6 6.0 36 62-97 4-39 (118)
437 PF01166 TSC22: TSC-22/dip/bun 36.9 44 0.00095 26.3 3.2 36 349-392 10-45 (59)
438 KOG4603 TBP-1 interacting prot 36.4 3.6E+02 0.0077 26.0 9.7 26 349-374 119-144 (201)
439 PF12854 PPR_1: PPR repeat 36.2 52 0.0011 22.3 3.2 25 276-300 8-32 (34)
440 PF10373 EST1_DNA_bind: Est1 D 36.2 66 0.0014 31.3 5.3 62 211-287 1-62 (278)
441 KOG0971 Microtubule-associated 36.1 6.1E+02 0.013 30.5 13.2 56 246-308 957-1016(1243)
442 PF13281 DUF4071: Domain of un 35.7 1.4E+02 0.0031 31.9 7.9 73 206-293 196-277 (374)
443 PF13281 DUF4071: Domain of un 35.5 4.9E+02 0.011 27.9 11.8 36 79-121 195-230 (374)
444 PF08626 TRAPPC9-Trs120: Trans 35.4 56 0.0012 39.9 5.5 55 232-288 241-295 (1185)
445 KOG4056 Translocase of outer m 35.4 1.3E+02 0.0028 27.8 6.4 37 59-95 74-110 (143)
446 TIGR03007 pepcterm_ChnLen poly 35.4 4.5E+02 0.0097 28.5 12.0 39 249-287 252-290 (498)
447 TIGR00756 PPR pentatricopeptid 34.8 75 0.0016 20.1 3.8 26 235-260 2-27 (35)
448 PF08969 USP8_dimer: USP8 dime 34.6 1.3E+02 0.0028 26.2 6.3 37 231-268 36-72 (115)
449 PHA02562 46 endonuclease subun 34.6 3.8E+02 0.0081 29.4 11.4 9 93-101 153-161 (562)
450 KOG3824 Huntingtin interacting 34.2 1E+02 0.0022 32.5 6.2 52 59-119 110-161 (472)
451 PF10952 DUF2753: Protein of u 33.6 1.8E+02 0.0039 26.6 7.0 45 68-112 3-47 (140)
452 cd07615 BAR_Endophilin_A3 The 33.6 3.4E+02 0.0073 27.0 9.6 23 290-312 158-180 (223)
453 PF13041 PPR_2: PPR repeat fam 33.2 87 0.0019 22.5 4.3 27 234-260 4-30 (50)
454 KOG0686 COP9 signalosome, subu 33.2 3E+02 0.0065 30.0 9.6 63 232-299 149-211 (466)
455 PF14346 DUF4398: Domain of un 33.1 1E+02 0.0022 26.2 5.3 35 61-95 40-74 (103)
456 KOG0686 COP9 signalosome, subu 33.1 77 0.0017 34.3 5.3 93 204-300 162-254 (466)
457 PRK04406 hypothetical protein; 32.8 2.1E+02 0.0046 23.4 6.8 71 299-401 3-73 (75)
458 PRK05685 fliS flagellar protei 32.8 2.4E+02 0.0051 25.4 7.9 42 63-104 32-73 (132)
459 cd07623 BAR_SNX1_2 The Bin/Amp 32.7 4.8E+02 0.01 25.4 14.7 30 347-376 150-179 (224)
460 PF09177 Syntaxin-6_N: Syntaxi 32.6 3E+02 0.0066 23.1 8.9 61 291-373 37-97 (97)
461 KOG3677 RNA polymerase I-assoc 32.6 31 0.00067 37.4 2.3 26 279-304 276-301 (525)
462 KOG2880 SMAD6 interacting prot 32.0 6.7E+02 0.014 26.9 14.2 44 231-275 33-76 (424)
463 COG3014 Uncharacterized protei 31.9 1.6E+02 0.0034 31.4 7.3 34 232-265 124-157 (449)
464 COG5091 SGT1 Suppressor of G2 31.5 62 0.0013 33.3 4.1 58 207-265 54-111 (368)
465 PRK03947 prefoldin subunit alp 31.3 2E+02 0.0044 25.7 7.2 23 297-319 91-113 (140)
466 KOG3807 Predicted membrane pro 31.3 4.9E+02 0.011 27.9 10.6 108 74-299 192-299 (556)
467 PF09311 Rab5-bind: Rabaptin-l 31.2 1.2E+02 0.0026 28.7 6.0 46 229-274 136-181 (181)
468 COG5091 SGT1 Suppressor of G2 31.0 55 0.0012 33.7 3.7 61 245-307 51-111 (368)
469 PF13812 PPR_3: Pentatricopept 31.0 88 0.0019 20.0 3.7 27 234-260 2-28 (34)
470 COG1196 Smc Chromosome segrega 30.9 5.8E+02 0.013 31.2 13.0 20 238-257 689-708 (1163)
471 PRK09039 hypothetical protein; 30.8 6.5E+02 0.014 26.4 15.7 39 249-287 114-152 (343)
472 KOG3771 Amphiphysin [Intracell 30.6 7.7E+02 0.017 27.2 14.7 108 234-372 123-230 (460)
473 TIGR02710 CRISPR-associated pr 30.5 5.5E+02 0.012 27.6 11.2 21 287-307 258-278 (380)
474 PHA01750 hypothetical protein 30.5 2.4E+02 0.0052 22.9 6.4 23 352-374 48-70 (75)
475 PF10168 Nup88: Nuclear pore c 30.3 1.8E+02 0.004 33.7 8.2 25 352-376 684-708 (717)
476 PF15188 CCDC-167: Coiled-coil 29.9 2.6E+02 0.0056 23.7 6.9 58 295-374 7-64 (85)
477 PF02388 FemAB: FemAB family; 29.7 2.4E+02 0.0052 30.1 8.6 57 290-375 239-295 (406)
478 cd07614 BAR_Endophilin_A2 The 29.5 5.7E+02 0.012 25.4 12.1 47 78-125 58-104 (223)
479 KOG2053 Mitochondrial inherita 29.5 3.8E+02 0.0083 31.9 10.4 48 235-291 79-126 (932)
480 KOG1997 PH domain-containing p 29.4 2.6E+02 0.0056 35.0 9.3 88 212-300 1161-1250(1518)
481 PRK04863 mukB cell division pr 28.9 9.1E+02 0.02 30.7 14.2 33 232-264 309-341 (1486)
482 PRK09039 hypothetical protein; 28.9 6.8E+02 0.015 26.3 11.6 25 239-263 69-93 (343)
483 COG4976 Predicted methyltransf 28.8 69 0.0015 32.3 3.9 53 206-265 9-61 (287)
484 PF08969 USP8_dimer: USP8 dime 28.4 1.4E+02 0.0031 25.8 5.5 38 59-96 31-68 (115)
485 PRK13729 conjugal transfer pil 28.3 6.7E+02 0.014 27.8 11.5 17 353-369 104-120 (475)
486 KOG3081 Vesicle coat complex C 27.7 2.7E+02 0.0058 28.7 7.9 72 232-314 175-246 (299)
487 smart00748 HEPN Higher Eukaryt 27.6 1E+02 0.0022 26.3 4.5 33 64-96 2-34 (113)
488 KOG2422 Uncharacterized conser 27.5 5.1E+02 0.011 29.5 10.5 95 206-300 252-367 (665)
489 smart00777 Mad3_BUB1_I Mad3/BU 27.5 2.7E+02 0.0059 25.0 7.2 76 212-300 46-124 (125)
490 PF09613 HrpB1_HrpK: Bacterial 27.4 2.3E+02 0.005 26.7 6.9 64 230-301 7-70 (160)
491 KOG4322 Anaphase-promoting com 27.2 1.7E+02 0.0037 31.9 6.7 91 209-302 370-469 (482)
492 cd09247 BRO1_Alix_like_2 Prote 27.0 5E+02 0.011 27.1 10.3 36 232-267 252-287 (346)
493 KOG1573 Aldehyde reductase [Ge 26.8 5.3E+02 0.011 24.7 9.1 63 229-291 72-137 (204)
494 KOG0837 Transcriptional activa 26.8 3.1E+02 0.0066 28.0 8.0 64 279-371 203-266 (279)
495 cd09239 BRO1_HD-PTP_like Prote 26.7 7.7E+02 0.017 26.0 12.9 19 105-123 111-129 (361)
496 KOG0739 AAA+-type ATPase [Post 26.7 95 0.0021 32.6 4.6 36 62-97 6-41 (439)
497 KOG2518 5'-3' exonuclease [Rep 26.5 1.3E+02 0.0028 33.6 5.8 45 65-117 95-139 (556)
498 cd07670 BAR_SNX18 The Bin/Amph 26.2 5.2E+02 0.011 25.5 9.3 133 213-377 30-183 (207)
499 PRK11637 AmiB activator; Provi 26.2 3.1E+02 0.0068 29.3 8.7 23 294-316 76-98 (428)
500 KOG0739 AAA+-type ATPase [Post 26.0 8.2E+02 0.018 26.0 11.8 20 245-264 22-41 (439)
No 1
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=2e-24 Score=218.40 Aligned_cols=272 Identities=25% Similarity=0.336 Sum_probs=188.2
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCc--CCC
Q 011759 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKE--GDS 139 (478)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~--~e~ 139 (478)
.-.++..|+.+|+++|.+++|+.|++.|++|+++..++||+.|.+|+++||+||++||++++.++.||||..... ++.
T Consensus 37 ~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~nale~~~~eE~ 116 (400)
T KOG4563|consen 37 KEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGNALETESAEEE 116 (400)
T ss_pred HHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccch
Confidence 446689999999999999999999999999999999999999999999999999999999999999999976321 110
Q ss_pred CCCCCCccccccccCCCCCccCCCCcccccCCCCC-cCccc---CCCCCCCCCccCCCCCccccccccCcChHHHHHHHH
Q 011759 140 QQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNN-QDEAA---DDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKML 215 (478)
Q Consensus 140 ~~~~~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~-~d~~~---~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~L 215 (478)
.-....+.+. ..|+ .+..+ ..+..-+.+..+.+..++....+++++++..+|+.|
T Consensus 117 e~~~s~e~s~---------------------e~nn~~e~vee~r~~~a~~~kekeEae~~ed~~~~e~e~dt~k~~wE~L 175 (400)
T KOG4563|consen 117 EVEKSGELSD---------------------EENNNKETVEEYRYGLALLEKEKEEAEKTEDKPAAEDEVDTMKLAWEEL 175 (400)
T ss_pred hhccccccch---------------------hhhccHHHHHHHHhhhhhhhhhhhhcccccCCccccchhhhhhhhhhhh
Confidence 0000000000 0000 00000 000000000001111122333445678999999999
Q ss_pred HHHHHHHHHhcCC---------------CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh-HHHHHHH
Q 011759 216 DVARAIAEKHWGD---------------SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSR-HIAELNF 279 (478)
Q Consensus 216 e~Ar~I~ek~l~~---------------~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r-~iAea~~ 279 (478)
+..|+|-.+.... .+.+++.+..+|.-.+..++|++|+.+..++|.|.+-++++.+| .++..+.
T Consensus 176 e~sr~~~~~~~~s~~~~qe~k~~l~~~wdle~~~~l~~~~a~gias~k~eqal~d~ee~~sIs~~~l~~esrk~~a~~~~ 255 (400)
T KOG4563|consen 176 ETSRVIADKKSESLEAEQEGKGDLILGWDLELADVLKLLGAHGIASGKYEQALEDAEEALSISRVDLPEESRKEIAQTVD 255 (400)
T ss_pred hhhccccchhhhccccccccccchhhhhccccchhhhccCCccccccchhhhhHHHHHHhhhhhccccHHHHHHHhhhhh
Confidence 9999997665331 13345666666666668899999999999999999999999999 6999999
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccccccccccccccccchhhhHHHHHHHHHH
Q 011759 280 RICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLS 359 (478)
Q Consensus 280 ~LG~ay~~~~~~eeAl~~~ekAL~I~k~rl~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Ei~elk 359 (478)
.|+........+++...+|.. ++..|-.++++++.....+ + ...-.+...+.++++|+
T Consensus 256 il~~~~~~s~~~Ee~~~~~~~----~KnvLi~~e~Ev~~~~~k~-----------~-------d~~~~es~~~~~~~ele 313 (400)
T KOG4563|consen 256 ILCSAAESSLEREEIESSFSD----TKNVLIEREREVKDDLEKG-----------V-------DDNFRESECLSELKELE 313 (400)
T ss_pred hccccccchhHHHHHHHHHHH----hhhHHHHHHHhhccccccc-----------c-------cccccchhHHHhhhhHH
Confidence 999988877777766666554 4445555555555433211 0 00113467889999999
Q ss_pred hhHHHHHHHHHHHHHhh
Q 011759 360 GLCGDLEKKLEDLQQVA 376 (478)
Q Consensus 360 ~ll~dl~~KieDlk~~~ 376 (478)
++||.|+++|-|++..+
T Consensus 314 e~ip~leq~i~d~k~~A 330 (400)
T KOG4563|consen 314 EMIPELEQAILDAKASA 330 (400)
T ss_pred hHHHHHHHHHHHhccch
Confidence 99999999999998743
No 2
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.74 E-value=7.2e-17 Score=173.43 Aligned_cols=163 Identities=22% Similarity=0.152 Sum_probs=150.5
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCC
Q 011759 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQ 141 (478)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~ 141 (478)
.+..+.-+...|..|+.+++|.+|+.+|.+||.|+.+.||++||.+|.+|++++.+|+..
T Consensus 237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~-------------------- 296 (508)
T KOG1840|consen 237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQ-------------------- 296 (508)
T ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc--------------------
Confidence 344566667799999999999999999999999999999999999999999999999643
Q ss_pred CCCCccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHH
Q 011759 142 GSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAI 221 (478)
Q Consensus 142 ~~~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I 221 (478)
++|..|.+.++.|+.|
T Consensus 297 ----------------------------------------------------------------GKf~EA~~~~e~Al~I 312 (508)
T KOG1840|consen 297 ----------------------------------------------------------------GKFAEAEEYCERALEI 312 (508)
T ss_pred ----------------------------------------------------------------CChHHHHHHHHHHHHH
Confidence 4678889999999999
Q ss_pred HHHhcC-CCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 011759 222 AEKHWG-DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 300 (478)
Q Consensus 222 ~ek~l~-~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ek 300 (478)
+++.++ .+++++..+.+++.++..+++|++|+.+|+++|+|....+|++|+.+|.++.|||.+|.++|+|++|.++|++
T Consensus 313 ~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ 392 (508)
T KOG1840|consen 313 YEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKK 392 (508)
T ss_pred HHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 999665 4688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 011759 301 AISVCKSR 308 (478)
Q Consensus 301 AL~I~k~r 308 (478)
||.+.+..
T Consensus 393 ai~~~~~~ 400 (508)
T KOG1840|consen 393 AIQILREL 400 (508)
T ss_pred HHHHHHhc
Confidence 99987654
No 3
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.63 E-value=1.9e-14 Score=154.89 Aligned_cols=159 Identities=18% Similarity=0.128 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCC
Q 011759 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (478)
Q Consensus 65 ~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~ 144 (478)
....+..+|..+..+|+|+.|...|.+|++++.+.+|-.||.++..+.+||.+|..+
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~----------------------- 254 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL----------------------- 254 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh-----------------------
Confidence 356666799999999999999999999999999999999999999999999999865
Q ss_pred CccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011759 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 224 (478)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek 224 (478)
+.|..|..+|+.|+.|++.
T Consensus 255 -------------------------------------------------------------~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 255 -------------------------------------------------------------GKYDEAVNLYEEALTIREE 273 (508)
T ss_pred -------------------------------------------------------------ccHHHHHHHHHHHHHHHHH
Confidence 3466788899999999999
Q ss_pred hcC-CCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 011759 225 HWG-DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 303 (478)
Q Consensus 225 ~l~-~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~ 303 (478)
..+ .++.+|.+|++||..|...|+|++|..+|++|++|++++++..|+.++..|.+++.++...++|++|+.+|+++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 988 5899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 011759 304 VCKS 307 (478)
Q Consensus 304 I~k~ 307 (478)
|+..
T Consensus 354 i~~~ 357 (508)
T KOG1840|consen 354 IYLD 357 (508)
T ss_pred HHHh
Confidence 9884
No 4
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.52 E-value=5.2e-14 Score=113.43 Aligned_cols=78 Identities=26% Similarity=0.298 Sum_probs=72.9
Q ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Q 011759 229 SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 307 (478)
Q Consensus 229 ~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~ 307 (478)
|+.++.+|++||.++..+|+|++|+.+|++||+| .+.+|++|+.++.++++||.+|...|++++|+.+|++|++|+++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 4678999999999999999999999999999999 77889999999999999999999999999999999999999874
No 5
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.41 E-value=5.6e-13 Score=142.79 Aligned_cols=56 Identities=14% Similarity=0.126 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc
Q 011759 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP 128 (478)
Q Consensus 65 ~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdv 128 (478)
.|..+.++|..+..+|+.-.|+.+|.+|+.| .|-..++|+++|.+|-+..+.+..|
T Consensus 217 fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--------dP~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 217 FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--------DPNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred eeeeehhcchHHhhcchHHHHHHHHHHhhcC--------CCcchHHHhhHHHHHHHHhcchHHH
Confidence 3677777888888888888888888888877 6777788888888877776665543
No 6
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.28 E-value=2.8e-11 Score=130.00 Aligned_cols=167 Identities=21% Similarity=0.227 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCC-ccCCCCCCcCCCCCCC
Q 011759 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEAD-PLVSVPKKEGDSQQGS 143 (478)
Q Consensus 65 ~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esd-vLg~~~~~~~e~~~~~ 143 (478)
.-+.+.++|.++-..|+..+|++||.+||.+ .|--|++.+++|.++.+.+..+.. +|....
T Consensus 319 F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--------~p~hadam~NLgni~~E~~~~e~A~~ly~~a---------- 380 (966)
T KOG4626|consen 319 FPDAYNNLANALKDKGSVTEAVDCYNKALRL--------CPNHADAMNNLGNIYREQGKIEEATRLYLKA---------- 380 (966)
T ss_pred chHHHhHHHHHHHhccchHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhccchHHHHHHHHH----------
Confidence 4677888888888888888888888888887 577778888888888877544322 111000
Q ss_pred CCccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011759 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 223 (478)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~e 223 (478)
-..+++.+.+. .+.+.-....++|+.|...|..|+.|
T Consensus 381 -------l~v~p~~aaa~----------------------------------nNLa~i~kqqgnl~~Ai~~YkealrI-- 417 (966)
T KOG4626|consen 381 -------LEVFPEFAAAH----------------------------------NNLASIYKQQGNLDDAIMCYKEALRI-- 417 (966)
T ss_pred -------HhhChhhhhhh----------------------------------hhHHHHHHhcccHHHHHHHHHHHHhc--
Confidence 00111111000 00111112347788888888888776
Q ss_pred HhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 011759 224 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 303 (478)
Q Consensus 224 k~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~ 303 (478)
.+..|++|.++|.+|-++|+...|+.+|.+|+.|.. ..|++|.|||.+|...|...+||..|+.||.
T Consensus 418 -----~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nP--------t~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 418 -----KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINP--------TFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred -----CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc--------HHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 578999999999999999999999999999999875 4589999999999999999999999999998
Q ss_pred HH
Q 011759 304 VC 305 (478)
Q Consensus 304 I~ 305 (478)
+.
T Consensus 485 lk 486 (966)
T KOG4626|consen 485 LK 486 (966)
T ss_pred cC
Confidence 74
No 7
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.16 E-value=1.7e-09 Score=99.75 Aligned_cols=53 Identities=19% Similarity=0.093 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhc
Q 011759 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQE 124 (478)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~ 124 (478)
..+..++.+|..++..|+|++|..+|.+++++ +|....+++.+|.+++..++.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~ 81 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGEL 81 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCH
Confidence 45788899999999999999999999999886 678889999999999887443
No 8
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.16 E-value=1.4e-09 Score=109.82 Aligned_cols=173 Identities=17% Similarity=0.026 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCC--CCCCcCCCCCC
Q 011759 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVS--VPKKEGDSQQG 142 (478)
Q Consensus 65 ~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~--~~~~~~e~~~~ 142 (478)
.+..++.+|..+...|++++|+..|.+|+++ +|..+.+|+.+|.++...++.+..+--. +.+
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~-------- 126 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE-------- 126 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------
Confidence 4677999999999999999999999999998 7999999999999999987664431100 000
Q ss_pred CCCccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011759 143 SDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 222 (478)
Q Consensus 143 ~~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ 222 (478)
.++... .. . -..+...-..+.++.|.+.|+.++.+.
T Consensus 127 ----------l~P~~~------~a---~-------------------------~~lg~~l~~~g~~~eA~~~~~~al~~~ 162 (296)
T PRK11189 127 ----------LDPTYN------YA---Y-------------------------LNRGIALYYGGRYELAQDDLLAFYQDD 162 (296)
T ss_pred ----------hCCCCH------HH---H-------------------------HHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 000000 00 0 000000011255666666666665432
Q ss_pred HHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH----------HhcCC---------------C----ChH
Q 011759 223 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE----------RMVEP---------------D----SRH 273 (478)
Q Consensus 223 ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~----------~llg~---------------d----~r~ 273 (478)
+.+ + ....+ ..+....+++++|+..|.+++.... -.++. . .+.
T Consensus 163 ---P~~-~-~~~~~---~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~ 234 (296)
T PRK11189 163 ---PND-P-YRALW---LYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAER 234 (296)
T ss_pred ---CCC-H-HHHHH---HHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHH
Confidence 111 1 01111 1233445677788777766543210 00111 1 234
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 011759 274 IAELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (478)
Q Consensus 274 iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~ 305 (478)
.+++||+||.+|...|++++|+.+|++|+++-
T Consensus 235 ~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 235 LCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 56899999999999999999999999999875
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.14 E-value=6.7e-10 Score=122.52 Aligned_cols=167 Identities=16% Similarity=0.064 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc--cCCCCCCcCCCCCC
Q 011759 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQG 142 (478)
Q Consensus 65 ~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdv--Lg~~~~~~~e~~~~ 142 (478)
.+..+..+|..++.+|+|++|+.+|.+++++ +|.+..+|+.+|.+++.+++.+..+ |-.+..
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-------- 393 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALK-------- 393 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------
Confidence 3556788899999999999999999999987 6888899999999998876543321 000000
Q ss_pred CCCccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011759 143 SDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 222 (478)
Q Consensus 143 ~~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ 222 (478)
.++... ... -..+...-..++++.|...|+.++.
T Consensus 394 ----------~~p~~~------~~~----------------------------~~lg~~~~~~g~~~~A~~~~~kal~-- 427 (615)
T TIGR00990 394 ----------LNSEDP------DIY----------------------------YHRAQLHFIKGEFAQAGKDYQKSID-- 427 (615)
T ss_pred ----------hCCCCH------HHH----------------------------HHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 000000 000 0000000112455555555555443
Q ss_pred HHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 011759 223 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 302 (478)
Q Consensus 223 ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL 302 (478)
..+.....|..||.++..+|+|++|+..|++++.+.. ..+.+|+.+|.+|...|+|++|+.+|++|+
T Consensus 428 -----l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al 494 (615)
T TIGR00990 428 -----LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP--------EAPDVYNYYGELLLDQNKFDEAIEKFDTAI 494 (615)
T ss_pred -----cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------CChHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3456678899999999999999999999999997642 235789999999999999999999999999
Q ss_pred HHHH
Q 011759 303 SVCK 306 (478)
Q Consensus 303 ~I~k 306 (478)
.+.+
T Consensus 495 ~l~p 498 (615)
T TIGR00990 495 ELEK 498 (615)
T ss_pred hcCC
Confidence 9864
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.11 E-value=4.4e-09 Score=116.03 Aligned_cols=175 Identities=13% Similarity=0.145 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccC--CCCCCcCCCCCCC
Q 011759 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLV--SVPKKEGDSQQGS 143 (478)
Q Consensus 66 A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg--~~~~~~~e~~~~~ 143 (478)
...+..+|..++..|+|++|+.+|.+++++ .|....+|+.+|.+++.+++.+..+-- .+.+.
T Consensus 399 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-------- 462 (615)
T TIGR00990 399 PDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-------- 462 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------
Confidence 678999999999999999999999999998 788999999999999988765443111 00000
Q ss_pred CCccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011759 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 223 (478)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~e 223 (478)
.+... ... -..+...-..++++.|.+.|+.|+.+..
T Consensus 463 ----------~P~~~------~~~----------------------------~~lg~~~~~~g~~~~A~~~~~~Al~l~p 498 (615)
T TIGR00990 463 ----------FPEAP------DVY----------------------------NYYGELLLDQNKFDEAIEKFDTAIELEK 498 (615)
T ss_pred ----------CCCCh------HHH----------------------------HHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 00000 000 0000111234678888888888887754
Q ss_pred HhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 011759 224 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 303 (478)
Q Consensus 224 k~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~ 303 (478)
+.......+...+...+.++...++|++|+..|+++|.+. +++ ..++..||.+|...|++++|+.+|++|++
T Consensus 499 ~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-----p~~---~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 499 ETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-----PEC---DIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred ccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-----CCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4322223344445555556666899999999999999873 233 35789999999999999999999999999
Q ss_pred HHHHH
Q 011759 304 VCKSR 308 (478)
Q Consensus 304 I~k~r 308 (478)
+.+..
T Consensus 571 l~~~~ 575 (615)
T TIGR00990 571 LARTE 575 (615)
T ss_pred HhccH
Confidence 86653
No 11
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.07 E-value=7.7e-09 Score=103.82 Aligned_cols=149 Identities=23% Similarity=0.228 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCC
Q 011759 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (478)
Q Consensus 66 A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~ 145 (478)
+..+...|..+...|+|++|.++|.+|.++... .|. ....|..|..-+.++..
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~-~~~-~~~Aa~~~~~Aa~~~k~------------------------- 87 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEK-LGD-KFEAAKAYEEAANCYKK------------------------- 87 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH-------------------------
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH-cCC-HHHHHHHHHHHHHHHHh-------------------------
Confidence 455555567777889999999999999998876 443 34566777776666542
Q ss_pred ccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011759 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (478)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~ 225 (478)
.+++.|.++|+.|..+|.+.
T Consensus 88 ------------------------------------------------------------~~~~~Ai~~~~~A~~~y~~~ 107 (282)
T PF14938_consen 88 ------------------------------------------------------------GDPDEAIECYEKAIEIYREA 107 (282)
T ss_dssp ------------------------------------------------------------TTHHHHHHHHHHHHHHHHHC
T ss_pred ------------------------------------------------------------hCHHHHHHHHHHHHHHHHhc
Confidence 25668899999999999865
Q ss_pred cCCCchHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 011759 226 WGDSMEKVDILSALAEVALER-EDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 226 l~~~~~~Ad~~~~LGev~le~-g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I 304 (478)
+.....|.++..||.+|... +++++|+.+|++|+++.+..- .......++.+++.+|...++|++|+..|++.+..
T Consensus 108 -G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 108 -GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp -T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred -CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34456799999999999999 999999999999999999764 45668899999999999999999999999997754
No 12
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.05 E-value=6.9e-09 Score=95.73 Aligned_cols=134 Identities=15% Similarity=0.126 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCC
Q 011759 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (478)
Q Consensus 66 A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~ 145 (478)
+..+..+|..++..|+|++|..+|.+++++ +|....+++++|.+++..
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~~~------------------------ 112 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTL--------NPNNGDVLNNYGTFLCQQ------------------------ 112 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHc------------------------
Confidence 456778999999999999999999999987 566778999999998754
Q ss_pred ccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011759 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (478)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~ 225 (478)
++++.|..+++.++...
T Consensus 113 ------------------------------------------------------------g~~~~A~~~~~~~~~~~--- 129 (234)
T TIGR02521 113 ------------------------------------------------------------GKYEQAMQQFEQAIEDP--- 129 (234)
T ss_pred ------------------------------------------------------------ccHHHHHHHHHHHHhcc---
Confidence 34666777777665421
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 011759 226 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 226 l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I 304 (478)
........+.++|.++...|+|++|+..|.+++.+... + ..+++.||.+|...+++++|+.+|++++.+
T Consensus 130 --~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 130 --LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-----R---PESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred --ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-----C---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 12345677899999999999999999999999987432 2 468999999999999999999999998875
No 13
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.02 E-value=5.8e-11 Score=121.27 Aligned_cols=308 Identities=28% Similarity=0.268 Sum_probs=221.0
Q ss_pred Cccccc-------chhhhhcccCCC-ccccccccc-eeeeeeeeccccccccccCCCCC-------CCCccCCch-hhhH
Q 011759 1 MAEEEG-------SQTVAEQTAQPT-ETVGTTQAS-VEATMESVTVSGTESTCNNNCET-------SGAIADGER-EKTV 63 (478)
Q Consensus 1 ~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~l 63 (478)
|+|+++ +||++++...++ +|..++..| ++.|++...++|+...|+|+.+. ++..++..- ++++
T Consensus 1 ~~e~sataa~as~vktl~~~~de~A~~Ts~~n~~s~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~ 80 (400)
T KOG4563|consen 1 MVEESATAAEASDVKTLTEPEDEKATGTSTENLESQKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHL 80 (400)
T ss_pred CCccchhhhhhhhhhhccccccCcCCCCCCccchhhHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 788877 889999988887 899999888 99999999999999999998773 333444444 5789
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHH----HHHHHHHhhCCCChhHHH-----HHHHHHHHHHhhhhccCCccCCCCC
Q 011759 64 EFADELMEKGTNALKESDYGEAAECFSR----ALEIRVSHYGELALECVN-----AYYQYGRALLYKAQEEADPLVSVPK 134 (478)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdy~eAve~ys~----Alei~~~~~Ge~~pe~A~-----~y~~YG~ALl~~a~~esdvLg~~~~ 134 (478)
+.+..|+-.|+.++..++++.++.++.. +.+....++|+...++-. -||+||.+++..++.+....++.|.
T Consensus 81 e~~eal~~YGkslLela~~e~~VL~nale~~~~eE~e~~~s~e~s~e~nn~~e~vee~r~~~a~~~kekeEae~~ed~~~ 160 (400)
T KOG4563|consen 81 ETFEALFLYGKSLLELAKEESQVLGNALETESAEEEEVEKSGELSDEENNNKETVEEYRYGLALLEKEKEEAEKTEDKPA 160 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccccchhhccccccchhhhccHHHHHHHHhhhhhhhhhhhhcccccCCcc
Confidence 9999999999999999999999999999 999999999998887776 9999999999999999888888765
Q ss_pred CcCCCCCCCCCccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCC---ccc-c-ccccCcChHH
Q 011759 135 KEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDG---ENV-A-EADEDESDLD 209 (478)
Q Consensus 135 ~~~e~~~~~~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~---E~~-~-e~eEd~ddle 209 (478)
.+.+.++.....+.+....-..+. ...+....+.+. ++.....+.+..+. .+. + ...+....|.
T Consensus 161 ~e~e~dt~k~~wE~Le~sr~~~~~-~~~s~~~~qe~k----------~~l~~~wdle~~~~l~~~~a~gias~k~eqal~ 229 (400)
T KOG4563|consen 161 AEDEVDTMKLAWEELETSRVIADK-KSESLEAEQEGK----------GDLILGWDLELADVLKLLGAHGIASGKYEQALE 229 (400)
T ss_pred ccchhhhhhhhhhhhhhhccccch-hhhccccccccc----------cchhhhhccccchhhhccCCccccccchhhhhH
Confidence 443322222112221111000000 000000000000 00000111111111 000 1 1223456777
Q ss_pred HHHHHHHHHHHHHHHhcCCCchHHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 011759 210 LAWKMLDVARAIAEKHWGDSMEKVDILSALA---EVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 286 (478)
Q Consensus 210 ~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LG---ev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~ 286 (478)
.+|++|.++|++...... ..++..+.+|+ ......++...+..+|+-.|-+++..+-+..+..++..+..+.|..
T Consensus 230 d~ee~~sIs~~~l~~esr--k~~a~~~~il~~~~~~s~~~Ee~~~~~~~~KnvLi~~e~Ev~~~~~k~~d~~~~es~~~~ 307 (400)
T KOG4563|consen 230 DAEEALSISRVDLPEESR--KEIAQTVDILCSAAESSLEREEIESSFSDTKNVLIEREREVKDDLEKGVDDNFRESECLS 307 (400)
T ss_pred HHHHHhhhhhccccHHHH--HHHhhhhhhccccccchhHHHHHHHHHHHhhhHHHHHHHhhcccccccccccccchhHHH
Confidence 788888888777655432 13566655555 4566677777888899999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011759 287 IGSKPQEAIPYCQKAISVCKSRVQRLLNEVKSLGE 321 (478)
Q Consensus 287 ~~~~~eeAl~~~ekAL~I~k~rl~~l~~~l~~~~~ 321 (478)
-...+++++.+++++|-.++.+...|.+.++....
T Consensus 308 ~~~elee~ip~leq~i~d~k~~Ae~~ee~~~~aa~ 342 (400)
T KOG4563|consen 308 ELKELEEMIPELEQAILDAKASAEQLEEEIKKAAG 342 (400)
T ss_pred hhhhHHhHHHHHHHHHHHhccchhhhhHHHHhhhh
Confidence 99999999999999999999999999998776654
No 14
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.00 E-value=2.6e-09 Score=110.87 Aligned_cols=98 Identities=17% Similarity=0.230 Sum_probs=67.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 285 (478)
+||+.|....+.-+.|-.... +....-.+|.+||..+.-.|+|+.|+++|++.|.+..++- +-.--|...|.||.+|
T Consensus 209 Gdf~~ai~~H~~RL~ia~efG-DrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg--~r~vEAQscYSLgNty 285 (639)
T KOG1130|consen 209 GDFDQAIHFHKLRLEIAQEFG-DRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELG--NRTVEAQSCYSLGNTY 285 (639)
T ss_pred ccHHHHHHHHHHHHHHHHHhh-hHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhc--chhHHHHHHHHhhhHH
Confidence 566667666555555554442 2222335777888888888888888888888888777764 2223477778888888
Q ss_pred HcCCCchHHHHHHHHHHHHHH
Q 011759 286 EIGSKPQEAIPYCQKAISVCK 306 (478)
Q Consensus 286 ~~~~~~eeAl~~~ekAL~I~k 306 (478)
....+|++||.|+++-|.|-+
T Consensus 286 tll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 286 TLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888777754
No 15
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.00 E-value=2.7e-09 Score=85.84 Aligned_cols=60 Identities=32% Similarity=0.363 Sum_probs=52.6
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILER 265 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~ 265 (478)
++++.|.++|+.|+.++......++.++.++.+||.++..+|+|++|+.+|++|++|+++
T Consensus 19 ~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 19 GRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp T-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 568899999999999955554456788999999999999999999999999999999875
No 16
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.99 E-value=4.2e-09 Score=95.65 Aligned_cols=85 Identities=20% Similarity=0.130 Sum_probs=72.2
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 285 (478)
++++.|+.+|+.++.+ .+...++|.+||.++...|+|++|+..|++++.+.... +.+|++||.||
T Consensus 38 g~~~~A~~~~~~al~~-------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~--------~~a~~~lg~~l 102 (144)
T PRK15359 38 GDYSRAVIDFSWLVMA-------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH--------PEPVYQTGVCL 102 (144)
T ss_pred CCHHHHHHHHHHHHHc-------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC--------cHHHHHHHHHH
Confidence 3566677776666543 46678999999999999999999999999999875432 59999999999
Q ss_pred HcCCCchHHHHHHHHHHHHH
Q 011759 286 EIGSKPQEAIPYCQKAISVC 305 (478)
Q Consensus 286 ~~~~~~eeAl~~~ekAL~I~ 305 (478)
...|++++|+.+|++||.+.
T Consensus 103 ~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 103 KMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999863
No 17
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.92 E-value=1.6e-09 Score=112.41 Aligned_cols=171 Identities=17% Similarity=0.143 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCC-CCCCcCCCCCCC
Q 011759 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVS-VPKKEGDSQQGS 143 (478)
Q Consensus 65 ~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~-~~~~~~e~~~~~ 143 (478)
+|+.--++|+.+-..|.|++|+-|..+-|.+.++. |+. .--+.+||++|.+|..+|+. +|. .|+
T Consensus 94 EAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areL-gDr-v~e~RAlYNlgnvYhakGk~----~g~~~pe--------- 158 (639)
T KOG1130|consen 94 EAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAREL-GDR-VLESRALYNLGNVYHAKGKC----TGLEAPE--------- 158 (639)
T ss_pred cccccccccchhhhhcccchHHHHHHHHhHHHHHH-hHH-HhhhHHHhhhhhhhhhcccc----cCCCChh---------
Confidence 46666678999999999999999999999986554 432 23468999999999988654 221 000
Q ss_pred CCccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011759 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 223 (478)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~e 223 (478)
+ ++. -.+|.-++|+.|.++|+.-+.+.+
T Consensus 159 ------------------------e-------------~g~---------------f~~ev~~al~~Av~fy~eNL~l~~ 186 (639)
T KOG1130|consen 159 ------------------------E-------------KGA---------------FNAEVTSALENAVKFYMENLELSE 186 (639)
T ss_pred ------------------------h-------------ccc---------------ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000 001234788999888888777766
Q ss_pred HhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 011759 224 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 303 (478)
Q Consensus 224 k~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~ 303 (478)
+. ++..-...+|-+||..|.-+|+|++||.+.+.=|.|.++.-..-. .=.+|-|||.||.+.|+|+.|++||++++.
T Consensus 187 ~l-gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAa--eRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 187 KL-GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAA--ERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred Hh-hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHH--HHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 54 445566789999999999999999999999999999998753322 236899999999999999999999999876
Q ss_pred HH
Q 011759 304 VC 305 (478)
Q Consensus 304 I~ 305 (478)
+-
T Consensus 264 LA 265 (639)
T KOG1130|consen 264 LA 265 (639)
T ss_pred HH
Confidence 64
No 18
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.92 E-value=3.5e-08 Score=96.21 Aligned_cols=142 Identities=18% Similarity=0.188 Sum_probs=116.9
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCC
Q 011759 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQ 141 (478)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~ 141 (478)
.-+.++..+.+|--++..||+..|...+.+||++ .|....+|..++..+-.+
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~-------------------- 82 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKL-------------------- 82 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHc--------------------
Confidence 3456888999999999999999999999999998 787766665554444332
Q ss_pred CCCCccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHH
Q 011759 142 GSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAI 221 (478)
Q Consensus 142 ~~~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I 221 (478)
++.++|.+.|++|+.+
T Consensus 83 ----------------------------------------------------------------Ge~~~A~e~YrkAlsl 98 (250)
T COG3063 83 ----------------------------------------------------------------GENDLADESYRKALSL 98 (250)
T ss_pred ----------------------------------------------------------------CChhhHHHHHHHHHhc
Confidence 2344566666666654
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 011759 222 AEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKA 301 (478)
Q Consensus 222 ~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekA 301 (478)
.++-+++++|.|...+.+|+|++|...|++|+. .|.-...+.+|-|+|+|-..+|+++.|..+|+++
T Consensus 99 -------~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~------~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ra 165 (250)
T COG3063 99 -------APNNGDVLNNYGAFLCAQGRPEEAMQQFERALA------DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRA 165 (250)
T ss_pred -------CCCccchhhhhhHHHHhCCChHHHHHHHHHHHh------CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHH
Confidence 667899999999999999999999999999864 4666778899999999999999999999999999
Q ss_pred HHHHHHH
Q 011759 302 ISVCKSR 308 (478)
Q Consensus 302 L~I~k~r 308 (478)
|++....
T Consensus 166 L~~dp~~ 172 (250)
T COG3063 166 LELDPQF 172 (250)
T ss_pred HHhCcCC
Confidence 9886543
No 19
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=1.2e-08 Score=102.65 Aligned_cols=106 Identities=22% Similarity=0.258 Sum_probs=87.5
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCC
Q 011759 61 KTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQ 140 (478)
Q Consensus 61 ~~l~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~ 140 (478)
.....|..|-.+|..+++.++|.+|+++|.+|+++ .|.+|.+|-+-.-||.++
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~L------------------- 128 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKL------------------- 128 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHh-------------------
Confidence 56678999999999999999999999999999998 788888888888888876
Q ss_pred CCCCCccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHH
Q 011759 141 QGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARA 220 (478)
Q Consensus 141 ~~~~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~ 220 (478)
+.++.||+-++.|+.
T Consensus 129 -----------------------------------------------------------------g~~~~AVkDce~Al~ 143 (304)
T KOG0553|consen 129 -----------------------------------------------------------------GEYEDAVKDCESALS 143 (304)
T ss_pred -----------------------------------------------------------------cchHHHHHHHHHHHh
Confidence 235567777777776
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 011759 221 IAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILER 265 (478)
Q Consensus 221 I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~ 265 (478)
| .+....+|..||.+|+.+|+|..|+..|+++|+|-..
T Consensus 144 i-------Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~ 181 (304)
T KOG0553|consen 144 I-------DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPD 181 (304)
T ss_pred c-------ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCC
Confidence 5 3466778888888888888888888888888877643
No 20
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.90 E-value=3.3e-08 Score=91.23 Aligned_cols=125 Identities=16% Similarity=0.079 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCC
Q 011759 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGS 143 (478)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~ 143 (478)
..+..++..|..++..|+|++|..+|.+|+.+. +.++..+.+|+++|.++..+
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~---------------------- 85 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSN---------------------- 85 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHc----------------------
Confidence 468889999999999999999999999999983 23556788999999999875
Q ss_pred CCccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011759 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 223 (478)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~e 223 (478)
++++.|+..++.|+.+..
T Consensus 86 --------------------------------------------------------------g~~~eA~~~~~~Al~~~~ 103 (168)
T CHL00033 86 --------------------------------------------------------------GEHTKALEYYFQALERNP 103 (168)
T ss_pred --------------------------------------------------------------CCHHHHHHHHHHHHHhCc
Confidence 456778888888887743
Q ss_pred HhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q 011759 224 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAEL 277 (478)
Q Consensus 224 k~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea 277 (478)
........++.+|.++|.++...|+|+.|+.+|.+++.+.++.++.++...-.+
T Consensus 104 ~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~ 157 (168)
T CHL00033 104 FLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEA 157 (168)
T ss_pred CcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHH
Confidence 333233456677777777777999999999999999999999988887544333
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.89 E-value=2.1e-08 Score=116.42 Aligned_cols=161 Identities=14% Similarity=0.037 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccC--CCCCCcCCCCCCCCC
Q 011759 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLV--SVPKKEGDSQQGSDK 145 (478)
Q Consensus 68 ~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg--~~~~~~~e~~~~~~~ 145 (478)
.++.+|..++..|++++|+.+|.+++.+ +|.....++.++..++..++.+..+-- .+..
T Consensus 544 a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~----------- 604 (987)
T PRK09782 544 DLLAAANTAQAAGNGAARDRWLQQAEQR--------GLGDNALYWWLHAQRYIPGQPELALNDLTRSLN----------- 604 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----------
Confidence 3678888899999999999999999876 466666666666666555443322100 0000
Q ss_pred ccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011759 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (478)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~ 225 (478)
.++. . ... -..+......++++.|...|+.|+
T Consensus 605 -------l~P~-~------~a~----------------------------~~LA~~l~~lG~~deA~~~l~~AL------ 636 (987)
T PRK09782 605 -------IAPS-A------NAY----------------------------VARATIYRQRHNVPAAVSDLRAAL------ 636 (987)
T ss_pred -------hCCC-H------HHH----------------------------HHHHHHHHHCCCHHHHHHHHHHHH------
Confidence 0000 0 000 000000011244455555555444
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 011759 226 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 226 l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I 304 (478)
...+..+.+|++||.++...|+|++|+..|+++|++... + +.+|++||.+|...|++++|+.+|++|+++
T Consensus 637 -~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-----~---~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 637 -ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD-----D---PALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred -HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----C---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 335677889999999999999999999999999997542 2 589999999999999999999999999965
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.86 E-value=4.7e-08 Score=109.28 Aligned_cols=162 Identities=13% Similarity=0.014 Sum_probs=115.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCC---c---cCCCCCCcCCCCCCC
Q 011759 70 MEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEAD---P---LVSVPKKEGDSQQGS 143 (478)
Q Consensus 70 ~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esd---v---Lg~~~~~~~e~~~~~ 143 (478)
..+|..++..|+|++|+..|.+++++ +|....+++++|.+|+..++.+.. . +-.+..
T Consensus 216 ~~l~~~l~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--------- 278 (656)
T PRK15174 216 GLAVDTLCAVGKYQEAIQTGESALAR--------GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--------- 278 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh---------
Confidence 45678889999999999999999997 688899999999999998766421 0 000000
Q ss_pred CCccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011759 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 223 (478)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~e 223 (478)
..+.... . . -..+...-..++++.|+..|+.++.+
T Consensus 279 ---------l~P~~~~------a--------~--------------------~~lg~~l~~~g~~~eA~~~l~~al~l-- 313 (656)
T PRK15174 279 ---------FNSDNVR------I--------V--------------------TLYADALIRTGQNEKAIPLLQQSLAT-- 313 (656)
T ss_pred ---------hCCCCHH------H--------H--------------------HHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 0000000 0 0 00000011235667777777666653
Q ss_pred HhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 011759 224 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 303 (478)
Q Consensus 224 k~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~ 303 (478)
.+....++..||.++...|+|++|+..|++++.... + .+..++.+|.+|...|++++|+.+|+++++
T Consensus 314 -----~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P-----~---~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 314 -----HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG-----V---TSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred -----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-----c---chHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455678899999999999999999999999988632 2 235677789999999999999999999999
Q ss_pred HHH
Q 011759 304 VCK 306 (478)
Q Consensus 304 I~k 306 (478)
+..
T Consensus 381 ~~P 383 (656)
T PRK15174 381 ARA 383 (656)
T ss_pred hCh
Confidence 843
No 23
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.85 E-value=1e-07 Score=91.65 Aligned_cols=188 Identities=13% Similarity=0.020 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccC--CCCCCcCCCCC
Q 011759 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLV--SVPKKEGDSQQ 141 (478)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg--~~~~~~~e~~~ 141 (478)
..+..++.+|..++..|+|++|+..|.+++.+. +.+|....+++.+|.+|+..++.+...-- ...+.
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~------ 99 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL------ 99 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH------
Confidence 447889999999999999999999999998873 34456668999999999988665432110 00000
Q ss_pred CCCCccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHH
Q 011759 142 GSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAI 221 (478)
Q Consensus 142 ~~~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I 221 (478)
.+.+. ...... ... +.--. ..........++++.|.+.|+.++..
T Consensus 100 ------------~p~~~------~~~~a~--~~~-------g~~~~--------~~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 100 ------------HPNHP------DADYAY--YLR-------GLSNY--------NQIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred ------------CcCCC------chHHHH--HHH-------HHHHH--------HhcccccCCHHHHHHHHHHHHHHHHH
Confidence 00000 000000 000 00000 00000001224566666666555443
Q ss_pred HHHhcCC----------CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCc
Q 011759 222 AEKHWGD----------SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKP 291 (478)
Q Consensus 222 ~ek~l~~----------~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~ 291 (478)
+-..... ...+...+..+|.+++.+|+|.+|+..|++++.... +++..+++++++|.+|...|++
T Consensus 145 ~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~a~~~l~~~~~~lg~~ 219 (235)
T TIGR03302 145 YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYP-----DTPATEEALARLVEAYLKLGLK 219 (235)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC-----CCcchHHHHHHHHHHHHHcCCH
Confidence 2221100 001223346899999999999999999999987753 4577789999999999999999
Q ss_pred hHHHHHHHHHH
Q 011759 292 QEAIPYCQKAI 302 (478)
Q Consensus 292 eeAl~~~ekAL 302 (478)
++|+.+|+...
T Consensus 220 ~~A~~~~~~l~ 230 (235)
T TIGR03302 220 DLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHHHH
Confidence 99999887643
No 24
>PRK12370 invasion protein regulator; Provisional
Probab=98.85 E-value=5.3e-08 Score=106.62 Aligned_cols=132 Identities=14% Similarity=0.074 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCCc
Q 011759 67 DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKD 146 (478)
Q Consensus 67 ~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~d 146 (478)
..+..+|..++..|+|++|+.+|.+|+++ +|.++.+|+++|.+|+..
T Consensus 339 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~------------------------- 385 (553)
T PRK12370 339 QALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMA------------------------- 385 (553)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHC-------------------------
Confidence 34556677777777777777777777776 677777777777777654
Q ss_pred cccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHhc
Q 011759 147 DSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHW 226 (478)
Q Consensus 147 e~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~l 226 (478)
++++.|...|+.|+.+
T Consensus 386 -----------------------------------------------------------G~~~eAi~~~~~Al~l----- 401 (553)
T PRK12370 386 -----------------------------------------------------------GQLEEALQTINECLKL----- 401 (553)
T ss_pred -----------------------------------------------------------CCHHHHHHHHHHHHhc-----
Confidence 3455666666666554
Q ss_pred CCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 011759 227 GDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 227 ~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I 304 (478)
.+....++..++.+++..|+|++|+..|++++... ++++ +..|++||.+|...|++++|+.+|++.+..
T Consensus 402 --~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~----~p~~---~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 402 --DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH----LQDN---PILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred --CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc----cccC---HHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 23334455666777788899999999988876543 2223 457889999999999999999998876544
No 25
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.84 E-value=4.5e-09 Score=114.13 Aligned_cols=165 Identities=18% Similarity=0.087 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhh-ccCCccCCCCCCcCCCCCCCCC
Q 011759 67 DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQ-EEADPLVSVPKKEGDSQQGSDK 145 (478)
Q Consensus 67 ~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~-~esdvLg~~~~~~~e~~~~~~~ 145 (478)
--|.++|++||.+++|++|..+|+.+-.+ .|-..+--=.|-.+|+++-+ .+-.+|...+-+
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~--------~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~---------- 415 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRI--------EPYRVKGMEIYSTTLWHLQDEVALSYLAQDLID---------- 415 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ccccccchhHHHHHHHHHHhhHHHHHHHHHHHh----------
Confidence 34678999999999999999999999887 34444444455566666511 111111110000
Q ss_pred ccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011759 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (478)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~ 225 (478)
+...++..+-+. +|. ---..|.+.|.+++++|.++
T Consensus 416 -------------~~~~sPesWca~-GNc---------------------------fSLQkdh~~Aik~f~RAiQl---- 450 (638)
T KOG1126|consen 416 -------------TDPNSPESWCAL-GNC---------------------------FSLQKDHDTAIKCFKRAIQL---- 450 (638)
T ss_pred -------------hCCCCcHHHHHh-cch---------------------------hhhhhHHHHHHHHHHHhhcc----
Confidence 000011111100 000 00113445555555544433
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 011759 226 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (478)
Q Consensus 226 l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~ 305 (478)
.++.+.+|..||-=+..++.||.|..+|++||.+..++| .+||.||++|.++++++.|.-||++|++|-
T Consensus 451 ---dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY--------nAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN 519 (638)
T KOG1126|consen 451 ---DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY--------NAWYGLGTVYLKQEKLEFAEFHFQKAVEIN 519 (638)
T ss_pred ---CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh--------HHHHhhhhheeccchhhHHHHHHHhhhcCC
Confidence 456788888899888888999999999999988888887 888999999999999999999999888763
No 26
>PRK12370 invasion protein regulator; Provisional
Probab=98.84 E-value=6.2e-08 Score=106.08 Aligned_cols=139 Identities=12% Similarity=0.145 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCC
Q 011759 68 ELMEKGTNALKE---SDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (478)
Q Consensus 68 ~L~~~G~~~~~~---gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~ 144 (478)
.+.-+|..++.. +++.+|+.+|.+|+++ .|..+.+|..+|.+++.+++. |..
T Consensus 260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--------dP~~a~a~~~La~~~~~~~~~-----g~~------------ 314 (553)
T PRK12370 260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNM--------SPNSIAPYCALAECYLSMAQM-----GIF------------ 314 (553)
T ss_pred HHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHc-----CCc------------
Confidence 355566555433 4678999999999998 799999999999998877432 100
Q ss_pred CccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011759 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 224 (478)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek 224 (478)
...++++.|...++.|+.+
T Consensus 315 ----------------------------------------------------------~~~~~~~~A~~~~~~Al~l--- 333 (553)
T PRK12370 315 ----------------------------------------------------------DKQNAMIKAKEHAIKATEL--- 333 (553)
T ss_pred ----------------------------------------------------------ccchHHHHHHHHHHHHHhc---
Confidence 0013444555444444432
Q ss_pred hcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 011759 225 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 225 ~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I 304 (478)
.+..+.+|..||.++...|+|++|+..|+++|++... + +.+|++||.+|...|++++|+.+|++|+++
T Consensus 334 ----dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-----~---~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l 401 (553)
T PRK12370 334 ----DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-----S---ADIKYYYGWNLFMAGQLEEALQTINECLKL 401 (553)
T ss_pred ----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----C---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3445566666666666666666666666666665322 1 356666666666666666666666666654
No 27
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.84 E-value=1.3e-08 Score=79.72 Aligned_cols=65 Identities=20% Similarity=0.284 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHH
Q 011759 232 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGS-KPQEAIPYCQKAISV 304 (478)
Q Consensus 232 ~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~-~~eeAl~~~ekAL~I 304 (478)
.|.+|..+|.+++..++|++|+.+|+++|++.. .-+.+|++||.||..++ ++.+|+.+|++||++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p--------~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP--------NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST--------THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 478999999999999999999999999999853 33689999999999999 799999999999976
No 28
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.83 E-value=4.6e-08 Score=88.86 Aligned_cols=112 Identities=12% Similarity=0.001 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCCcc
Q 011759 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDD 147 (478)
Q Consensus 68 ~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~de 147 (478)
.+..+|..++..|+|++|+.+|.+++.+ .|....+|+.+|.++..+
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~-------------------------- 71 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMML-------------------------- 71 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHH--------------------------
Confidence 4677899999999999999999999998 799999999999999876
Q ss_pred ccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcC
Q 011759 148 SVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWG 227 (478)
Q Consensus 148 ~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~l~ 227 (478)
++++.|...|+.|+.+
T Consensus 72 ----------------------------------------------------------g~~~~A~~~y~~Al~l------ 87 (144)
T PRK15359 72 ----------------------------------------------------------KEYTTAINFYGHALML------ 87 (144)
T ss_pred ----------------------------------------------------------hhHHHHHHHHHHHHhc------
Confidence 3455666666666643
Q ss_pred CCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 011759 228 DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 286 (478)
Q Consensus 228 ~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~ 286 (478)
.+..+..|++||.++..+|++++|+..|+++|.+.... +..+.++|.+..
T Consensus 88 -~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~--------~~~~~~~~~~~~ 137 (144)
T PRK15359 88 -DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYAD--------ASWSEIRQNAQI 137 (144)
T ss_pred -CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------hHHHHHHHHHHH
Confidence 45678999999999999999999999999999987544 366677776654
No 29
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.83 E-value=4.6e-08 Score=93.72 Aligned_cols=119 Identities=15% Similarity=0.144 Sum_probs=99.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCCccccccccCCCCC
Q 011759 79 ESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKNAVNGESS 158 (478)
Q Consensus 79 ~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~de~~~~~~~~e~a 158 (478)
.+++++++..|.+++.. +|..++.|+.+|++++..
T Consensus 52 ~~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~------------------------------------- 86 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWR------------------------------------- 86 (198)
T ss_pred chhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHC-------------------------------------
Confidence 56678888888888887 799999999999999864
Q ss_pred ccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Q 011759 159 TASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSA 238 (478)
Q Consensus 159 ~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~ 238 (478)
++++.|...|+.|+.+ .++.+++|..
T Consensus 87 -----------------------------------------------g~~~~A~~a~~~Al~l-------~P~~~~~~~~ 112 (198)
T PRK10370 87 -----------------------------------------------NDYDNALLAYRQALQL-------RGENAELYAA 112 (198)
T ss_pred -----------------------------------------------CCHHHHHHHHHHHHHh-------CCCCHHHHHH
Confidence 4566677777776654 4567889999
Q ss_pred HHHHH-HhcCC--HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 011759 239 LAEVA-LERED--IETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 239 LGev~-le~g~--feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I 304 (478)
+|.++ ...|+ +++|+..|+++|++.... ..+|++||.+|...|+|++|+.+|++++++
T Consensus 113 lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~--------~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 113 LATVLYYQAGQHMTPQTREMIDKALALDANE--------VTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC--------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99974 77788 599999999999987655 389999999999999999999999999875
No 30
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.82 E-value=8e-08 Score=107.92 Aligned_cols=134 Identities=8% Similarity=-0.064 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCC
Q 011759 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (478)
Q Consensus 66 A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~ 145 (478)
+..++.+|......|+|++|..+|.++|++ .|+...++++|+.+|.++
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--------~Pd~~~a~~~~a~~L~~~------------------------ 133 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQR--------FPDSSEAFILMLRGVKRQ------------------------ 133 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHh------------------------
Confidence 666778888888889999999999988888 788888889988888875
Q ss_pred ccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011759 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (478)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~ 225 (478)
..++.|. ..+++.
T Consensus 134 ------------------------------------------------------------~~~eeA~-------~~~~~~ 146 (694)
T PRK15179 134 ------------------------------------------------------------QGIEAGR-------AEIELY 146 (694)
T ss_pred ------------------------------------------------------------ccHHHHH-------HHHHHH
Confidence 2233443 444444
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 011759 226 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (478)
Q Consensus 226 l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~ 305 (478)
+...++.+..|+.+|.++...|+|++|+..|+++|. .++.-+.++.++|.+|...|+.++|...|++|++..
T Consensus 147 l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 147 FSGGSSSAREILLEAKSWDEIGQSEQADACFERLSR--------QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred hhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 444678899999999999999999999999999987 123346899999999999999999999999999876
Q ss_pred H
Q 011759 306 K 306 (478)
Q Consensus 306 k 306 (478)
-
T Consensus 219 ~ 219 (694)
T PRK15179 219 G 219 (694)
T ss_pred C
Confidence 3
No 31
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.81 E-value=4.2e-08 Score=102.05 Aligned_cols=101 Identities=14% Similarity=0.205 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCC
Q 011759 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (478)
Q Consensus 66 A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~ 145 (478)
+..|..+|..++..|+|++|+++|.+|+++ .|.++.+|+++|.+|+.+
T Consensus 2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~------------------------ 49 (356)
T PLN03088 2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKL------------------------ 49 (356)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHc------------------------
Confidence 456889999999999999999999999998 788999999999999875
Q ss_pred ccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011759 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (478)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~ 225 (478)
++++.|+..|+.|+.+
T Consensus 50 ------------------------------------------------------------g~~~eAl~~~~~Al~l---- 65 (356)
T PLN03088 50 ------------------------------------------------------------GNFTEAVADANKAIEL---- 65 (356)
T ss_pred ------------------------------------------------------------CCHHHHHHHHHHHHHh----
Confidence 3567777777777765
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 011759 226 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILER 265 (478)
Q Consensus 226 l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~ 265 (478)
.+..+.+|++||.+++.+|+|++|+.+|++||.+...
T Consensus 66 ---~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 66 ---DPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPG 102 (356)
T ss_pred ---CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 3456789999999999999999999999999987743
No 32
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.81 E-value=6.8e-08 Score=108.03 Aligned_cols=79 Identities=14% Similarity=0.054 Sum_probs=65.7
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHH
Q 011759 218 ARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPY 297 (478)
Q Consensus 218 Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~ 297 (478)
|+..|++.+...+..+.++..||.++...|+|++|+..|++++.+. |++ +.++++||.+|...|++++|+.+
T Consensus 269 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-----P~~---~~a~~~La~~l~~~G~~~eA~~~ 340 (656)
T PRK15174 269 AAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-----PDL---PYVRAMYARALRQVGQYTAASDE 340 (656)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHCCCHHHHHHH
Confidence 4445555444456778999999999999999999999999999863 233 47899999999999999999999
Q ss_pred HHHHHHH
Q 011759 298 CQKAISV 304 (478)
Q Consensus 298 ~ekAL~I 304 (478)
|++++..
T Consensus 341 l~~al~~ 347 (656)
T PRK15174 341 FVQLARE 347 (656)
T ss_pred HHHHHHh
Confidence 9998864
No 33
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.81 E-value=2.5e-07 Score=94.90 Aligned_cols=172 Identities=14% Similarity=0.111 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCC-hhHHHHHHHHHHHHHhhhhccCCc--cCCCCCCcCCCCCC
Q 011759 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELA-LECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQG 142 (478)
Q Consensus 66 A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~-pe~A~~y~~YG~ALl~~a~~esdv--Lg~~~~~~~e~~~~ 142 (478)
...+..+|..++..|+|++|+.+|.+++.. +... .....+|+.+|.+++..++.+... |-.....
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~------- 136 (389)
T PRK11788 69 VELHLALGNLFRRRGEVDRAIRIHQNLLSR-----PDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE------- 136 (389)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-------
Confidence 456777888888888888888888888762 2222 234567788888887765543321 1000000
Q ss_pred CCCccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011759 143 SDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 222 (478)
Q Consensus 143 ~~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ 222 (478)
++... ... ..........++++.|+++++.+....
T Consensus 137 -----------~~~~~------~~~----------------------------~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (389)
T PRK11788 137 -----------GDFAE------GAL----------------------------QQLLEIYQQEKDWQKAIDVAERLEKLG 171 (389)
T ss_pred -----------CcchH------HHH----------------------------HHHHHHHHHhchHHHHHHHHHHHHHhc
Confidence 00000 000 000000011244555555554443321
Q ss_pred HHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 011759 223 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 302 (478)
Q Consensus 223 ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL 302 (478)
.. ......+..|..||.+++..+++++|+..|++++++... ...+++.||.+|...|++++|+.+|++++
T Consensus 172 ~~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 241 (389)
T PRK11788 172 GD--SLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQ--------CVRASILLGDLALAQGDYAAAIEALERVE 241 (389)
T ss_pred CC--cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC--------CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 10 011124455666777777777777777777776665321 23566667777777777777777777766
Q ss_pred HH
Q 011759 303 SV 304 (478)
Q Consensus 303 ~I 304 (478)
.+
T Consensus 242 ~~ 243 (389)
T PRK11788 242 EQ 243 (389)
T ss_pred HH
Confidence 54
No 34
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.80 E-value=2e-07 Score=95.59 Aligned_cols=181 Identities=13% Similarity=0.089 Sum_probs=120.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccC--CCCCCc
Q 011759 59 REKTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLV--SVPKKE 136 (478)
Q Consensus 59 ~~~~l~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg--~~~~~~ 136 (478)
.++-...+...+.+|..++..|+|++|+.+|.+++++ +|.+..+|+.+|.+++..++.+..+-- .....
T Consensus 28 ~~~~~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~- 98 (389)
T PRK11788 28 QQKESNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKV--------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR- 98 (389)
T ss_pred hhhhhhhccHHHHHHHHHHhcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-
Confidence 3444455667778899999999999999999999997 688899999999999988665432110 00000
Q ss_pred CCCCCCCCCccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHH
Q 011759 137 GDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLD 216 (478)
Q Consensus 137 ~e~~~~~~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le 216 (478)
+. . .... + . .. - -..+...-..+++ +
T Consensus 99 ------------------~~-----~-~~~~-----~-~-~~----~------------~~La~~~~~~g~~-------~ 124 (389)
T PRK11788 99 ------------------PD-----L-TREQ-----R-L-LA----L------------QELGQDYLKAGLL-------D 124 (389)
T ss_pred ------------------CC-----C-CHHH-----H-H-HH----H------------HHHHHHHHHCCCH-------H
Confidence 00 0 0000 0 0 00 0 0000000011334 4
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHH
Q 011759 217 VARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIP 296 (478)
Q Consensus 217 ~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~ 296 (478)
.|+.+|.+.+...+....++..|+.++...|+|++|+..|++++.+... ..+..++..|++||.+|...+++++|+.
T Consensus 125 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 125 RAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD---SLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC---cchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 4455555554434556789999999999999999999999998765321 1234567788899999999999999999
Q ss_pred HHHHHHHHH
Q 011759 297 YCQKAISVC 305 (478)
Q Consensus 297 ~~ekAL~I~ 305 (478)
+|++++++.
T Consensus 202 ~~~~al~~~ 210 (389)
T PRK11788 202 LLKKALAAD 210 (389)
T ss_pred HHHHHHhHC
Confidence 999999864
No 35
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.80 E-value=5.2e-08 Score=89.88 Aligned_cols=101 Identities=13% Similarity=0.038 Sum_probs=80.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 285 (478)
++++.|+..|..|+.+.. .+...+.+|.+||.++...|+|++|+.+|+++|.+.+... ..+..++.+|+++|..+
T Consensus 49 g~~~~A~~~~~~al~l~~----~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~-~~~~~la~i~~~~~~~~ 123 (168)
T CHL00033 49 GEYAEALQNYYEAMRLEI----DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLP-QALNNMAVICHYRGEQA 123 (168)
T ss_pred CCHHHHHHHHHHHHhccc----cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHhhHHH
Confidence 457788888998887743 2345678999999999999999999999999999854432 33556667777777777
Q ss_pred HcCCCchHHHHHHHHHHHHHHHHHHH
Q 011759 286 EIGSKPQEAIPYCQKAISVCKSRVQR 311 (478)
Q Consensus 286 ~~~~~~eeAl~~~ekAL~I~k~rl~~ 311 (478)
...|+++.|+.+|.+|+.+++..++.
T Consensus 124 ~~~g~~~~A~~~~~~a~~~~~~a~~~ 149 (168)
T CHL00033 124 IEQGDSEIAEAWFDQAAEYWKQAIAL 149 (168)
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999988877664
No 36
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.76 E-value=8e-08 Score=84.31 Aligned_cols=84 Identities=20% Similarity=0.242 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 011759 207 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 286 (478)
Q Consensus 207 dle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~ 286 (478)
+++.|.++|+.+..+ .+....+|..+|.++..+++|++|+..|++++.+. +.....||++|.+|.
T Consensus 32 ~~~~A~~~~~~~~~~-------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 32 RYDEALKLFQLLAAY-------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--------PDDPRPYFHAAECLL 96 (135)
T ss_pred cHHHHHHHHHHHHHh-------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCChHHHHHHHHHHH
Confidence 455666666655543 23457899999999999999999999999999874 233689999999999
Q ss_pred cCCCchHHHHHHHHHHHHH
Q 011759 287 IGSKPQEAIPYCQKAISVC 305 (478)
Q Consensus 287 ~~~~~eeAl~~~ekAL~I~ 305 (478)
..|++++|+.+|++++.+.
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 97 ALGEPESALKALDLAIEIC 115 (135)
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 9999999999999999764
No 37
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.76 E-value=1.4e-07 Score=104.20 Aligned_cols=187 Identities=16% Similarity=0.056 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcc--CCCCCCcCCCCCCC
Q 011759 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPL--VSVPKKEGDSQQGS 143 (478)
Q Consensus 66 A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvL--g~~~~~~~e~~~~~ 143 (478)
+..++..|..++..|+|++|+..|.+++.+ +|..+.+++.+|.+++..++.+...- ......
T Consensus 22 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------- 85 (899)
T TIGR02917 22 PESLIEAAKSYLQKNKYKAAIIQLKNALQK--------DPNDAEARFLLGKIYLALGDYAAAEKELRKALSL-------- 85 (899)
T ss_pred HHHHHHHHHHHHHcCChHhHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------
Confidence 567899999999999999999999999987 78899999999999999876544211 000000
Q ss_pred CCccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCcccc---ccc-cCcC-----hHHHHHH-
Q 011759 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVA---EAD-EDES-----DLDLAWK- 213 (478)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~---e~e-Ed~d-----dle~AwE- 213 (478)
.+.+.. .-..... ....+ ++- ++... ... .... .+.+++.
T Consensus 86 ----------~~~~~~--~~~~~a~--~~~~~-------g~~---------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (899)
T TIGR02917 86 ----------GYPKNQ--VLPLLAR--AYLLQ-------GKF---------QQVLDELPGKTLLDDEGAAELLALRGLAY 135 (899)
T ss_pred ----------CCChhh--hHHHHHH--HHHHC-------CCH---------HHHHHhhcccccCCchhhHHHHHHHHHHH
Confidence 000000 0000000 00000 000 00000 000 0000 1112222
Q ss_pred ----HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCC
Q 011759 214 ----MLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGS 289 (478)
Q Consensus 214 ----~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~ 289 (478)
-++.|+..|.+.....+....++..+|.+++..|+|++|+..+++++.+. +. ...+++.+|.+|...|
T Consensus 136 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~g 207 (899)
T TIGR02917 136 LGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTAD-----PG---NVDALLLKGDLLLSLG 207 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CC---ChHHHHHHHHHHHhcC
Confidence 23667777777665555667788888888888888888888888887752 22 2478888999999999
Q ss_pred CchHHHHHHHHHHHHHH
Q 011759 290 KPQEAIPYCQKAISVCK 306 (478)
Q Consensus 290 ~~eeAl~~~ekAL~I~k 306 (478)
++++|+.+|++++.+..
T Consensus 208 ~~~~A~~~~~~a~~~~p 224 (899)
T TIGR02917 208 NIELALAAYRKAIALRP 224 (899)
T ss_pred CHHHHHHHHHHHHhhCC
Confidence 99999999999988754
No 38
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.73 E-value=1.8e-07 Score=93.94 Aligned_cols=98 Identities=22% Similarity=0.222 Sum_probs=82.1
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 285 (478)
.++..|-+.|..|-.++.+ .++....+.+|...+.++... ++++|+.+|++|+.|..+.- ..+..|.++.+||.+|
T Consensus 49 ~~~~~A~~ay~kAa~~~~~-~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G--~~~~aA~~~~~lA~~y 124 (282)
T PF14938_consen 49 KDWEKAAEAYEKAADCYEK-LGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG--RFSQAAKCLKELAEIY 124 (282)
T ss_dssp T-CHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT---HHHHHHHHHHHHHHH
T ss_pred hccchhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHH
Confidence 4566788888899888888 455567899999999998887 99999999999999998763 5677899999999999
Q ss_pred HcC-CCchHHHHHHHHHHHHHHH
Q 011759 286 EIG-SKPQEAIPYCQKAISVCKS 307 (478)
Q Consensus 286 ~~~-~~~eeAl~~~ekAL~I~k~ 307 (478)
+.. +++++|+.+|++|+++++.
T Consensus 125 e~~~~d~e~Ai~~Y~~A~~~y~~ 147 (282)
T PF14938_consen 125 EEQLGDYEKAIEYYQKAAELYEQ 147 (282)
T ss_dssp CCTT--HHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHH
Confidence 999 9999999999999999874
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.72 E-value=2.6e-08 Score=108.28 Aligned_cols=133 Identities=21% Similarity=0.226 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCC
Q 011759 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (478)
Q Consensus 66 A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~ 145 (478)
-......|+.+--+++++.|+.||.||+.+ .|..+-+|-++|-=+...
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~------------------------ 468 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIAT------------------------ 468 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhh------------------------
Confidence 456778999999999999999999999998 565555554444221110
Q ss_pred ccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011759 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (478)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~ 225 (478)
+.|+. |...|.+.
T Consensus 469 ------------------------------------------------------------ee~d~-------a~~~fr~A 481 (638)
T KOG1126|consen 469 ------------------------------------------------------------EEFDK-------AMKSFRKA 481 (638)
T ss_pred ------------------------------------------------------------HHHHh-------HHHHHHhh
Confidence 23444 44555555
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 011759 226 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (478)
Q Consensus 226 l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~ 305 (478)
+.-.++.-++|+-||.||+.+|+|+.|.-+|++|+.|-.... .+...+|..|...++.++|+.+|++|+-+-
T Consensus 482 l~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~ns--------vi~~~~g~~~~~~k~~d~AL~~~~~A~~ld 553 (638)
T KOG1126|consen 482 LGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNS--------VILCHIGRIQHQLKRKDKALQLYEKAIHLD 553 (638)
T ss_pred hcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccch--------hHHhhhhHHHHHhhhhhHHHHHHHHHHhcC
Confidence 555567788999999999999999999999999999876542 567789999999999999999999999763
No 40
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=1.8e-07 Score=100.67 Aligned_cols=108 Identities=17% Similarity=0.151 Sum_probs=92.6
Q ss_pred CcChHHHHHHHH-------HHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 011759 204 DESDLDLAWKML-------DVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAE 276 (478)
Q Consensus 204 d~ddle~AwE~L-------e~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAe 276 (478)
.+.|++.++-+| ++|..+|+..+...|.-...|++||-..-...++++||.-|++||+|+..+. .
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yV--------R 499 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYV--------R 499 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCee--------e
Confidence 346777777664 7788888888777788899999999999999999999999999999998875 8
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-------------HHHHHHHHHHhh
Q 011759 277 LNFRICLCLEIGSKPQEAIPYCQKAISVCKS-------------RVQRLLNEVKSL 319 (478)
Q Consensus 277 a~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~-------------rl~~l~~~l~~~ 319 (478)
+.||||++|..+|.|++|++||-.||.+.+. .+..|+..|-.+
T Consensus 500 ~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~ 555 (579)
T KOG1125|consen 500 VRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAM 555 (579)
T ss_pred eehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHc
Confidence 8999999999999999999999999999876 566666655444
No 41
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.72 E-value=1.5e-07 Score=111.39 Aligned_cols=167 Identities=14% Similarity=0.108 Sum_probs=101.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc--cCCCCCCcCCCCCCCCCccc
Q 011759 71 EKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQGSDKDDS 148 (478)
Q Consensus 71 ~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdv--Lg~~~~~~~e~~~~~~~de~ 148 (478)
.+|..++..|+|++|+.+|.+++++ +|..+.+++.+|.+|+..++.+... |-.+.+.
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~------------- 332 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRA--------NPKDSEALGALGQAYSQQGDRARAVAQFEKALAL------------- 332 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------
Confidence 4588999999999999999999998 7888999999999999886553321 0000000
Q ss_pred cccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHH-----HHHHHHHHHHH
Q 011759 149 VKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAW-----KMLDVARAIAE 223 (478)
Q Consensus 149 ~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~Aw-----E~Le~Ar~I~e 223 (478)
++... . . .+ . ...-..-.-.-.+..+. ..++.|+..|.
T Consensus 333 -----~p~~~----------------~--~----~~--~--------~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~ 375 (1157)
T PRK11447 333 -----DPHSS----------------N--R----DK--W--------ESLLKVNRYWLLIQQGDAALKANNLAQAERLYQ 375 (1157)
T ss_pred -----CCCcc----------------c--h----hH--H--------HHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 00000 0 0 00 0 00000000000001111 12355677777
Q ss_pred HhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 011759 224 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 303 (478)
Q Consensus 224 k~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~ 303 (478)
+.+...+..+.+|..||.++...|+|++|+..|+++|++... + +.++++|+.+|. .+++++|+.++++...
T Consensus 376 ~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-----~---~~a~~~L~~l~~-~~~~~~A~~~l~~l~~ 446 (1157)
T PRK11447 376 QARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-----N---TNAVRGLANLYR-QQSPEKALAFIASLSA 446 (1157)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----C---HHHHHHHHHHHH-hcCHHHHHHHHHhCCH
Confidence 776655666778888888888888888888888888877432 2 356778888775 3467888877766444
Q ss_pred H
Q 011759 304 V 304 (478)
Q Consensus 304 I 304 (478)
.
T Consensus 447 ~ 447 (1157)
T PRK11447 447 S 447 (1157)
T ss_pred H
Confidence 3
No 42
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=98.71 E-value=1.9e-08 Score=71.86 Aligned_cols=38 Identities=39% Similarity=0.758 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 011759 233 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPD 270 (478)
Q Consensus 233 Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d 270 (478)
|+||..||+|+++.++|++|+.+|++||+|++++++++
T Consensus 1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 1 ADVYDLLGEISLENENFEQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 57999999999999999999999999999999999864
No 43
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.69 E-value=2.3e-07 Score=93.87 Aligned_cols=84 Identities=12% Similarity=0.019 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 011759 207 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 286 (478)
Q Consensus 207 dle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~ 286 (478)
++..|...|+.|+.+ .++.+.+|++||.++...|+|++|+..|+++|++.... +.+|+++|.+|.
T Consensus 79 ~~~~A~~~~~~Al~l-------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~--------~~a~~~lg~~l~ 143 (296)
T PRK11189 79 LRALARNDFSQALAL-------RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY--------NYAYLNRGIALY 143 (296)
T ss_pred CHHHHHHHHHHHHHc-------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHH
Confidence 344555555555443 45678999999999999999999999999999875432 578999999999
Q ss_pred cCCCchHHHHHHHHHHHHH
Q 011759 287 IGSKPQEAIPYCQKAISVC 305 (478)
Q Consensus 287 ~~~~~eeAl~~~ekAL~I~ 305 (478)
..|++++|+..|++++.+.
T Consensus 144 ~~g~~~eA~~~~~~al~~~ 162 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQDD 162 (296)
T ss_pred HCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999864
No 44
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.62 E-value=2.6e-07 Score=109.37 Aligned_cols=168 Identities=15% Similarity=0.142 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccC--CCCCCcCCCCCCCCC
Q 011759 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLV--SVPKKEGDSQQGSDK 145 (478)
Q Consensus 68 ~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg--~~~~~~~e~~~~~~~ 145 (478)
.++.+|..++..|+|++|+.+|.+++++ +|..+.+++.+|.+++..++.+...-- .+.+.
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~---------- 414 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQV--------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM---------- 414 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------
Confidence 3467789999999999999999999998 688889999999999988655332100 00000
Q ss_pred ccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011759 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (478)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~ 225 (478)
++... .. . ....... ...+++.|..+++.......+.
T Consensus 415 --------~p~~~------~a--------~--------------------~~L~~l~-~~~~~~~A~~~l~~l~~~~~~~ 451 (1157)
T PRK11447 415 --------DPGNT------NA--------V--------------------RGLANLY-RQQSPEKALAFIASLSASQRRS 451 (1157)
T ss_pred --------CCCCH------HH--------H--------------------HHHHHHH-HhcCHHHHHHHHHhCCHHHHHH
Confidence 00000 00 0 0000000 0011222322222111000000
Q ss_pred cCC--CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 011759 226 WGD--SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 303 (478)
Q Consensus 226 l~~--~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~ 303 (478)
... ..-..+.+..+|.++...|+|++|+..|+++|++.. ++ ..++++||.+|...|++++|+..|++++.
T Consensus 452 ~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-----~~---~~~~~~LA~~~~~~G~~~~A~~~l~~al~ 523 (1157)
T PRK11447 452 IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-----GS---VWLTYRLAQDLRQAGQRSQADALMRRLAQ 523 (1157)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 000 001245788999999999999999999999998743 33 46899999999999999999999999887
Q ss_pred H
Q 011759 304 V 304 (478)
Q Consensus 304 I 304 (478)
+
T Consensus 524 ~ 524 (1157)
T PRK11447 524 Q 524 (1157)
T ss_pred c
Confidence 5
No 45
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.61 E-value=2.9e-07 Score=107.06 Aligned_cols=165 Identities=13% Similarity=0.004 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcc--CCCCCCcCCCCCCCCC
Q 011759 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPL--VSVPKKEGDSQQGSDK 145 (478)
Q Consensus 68 ~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvL--g~~~~~~~e~~~~~~~ 145 (478)
.+..++...+..|+|++|+.+|.+|+++ .|. +.+|+++|.+|..+++.+..+- -.+...
T Consensus 578 l~~~La~~l~~~Gr~~eAl~~~~~AL~l--------~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l---------- 638 (987)
T PRK09782 578 LYWWLHAQRYIPGQPELALNDLTRSLNI--------APS-ANAYVARATIYRQRHNVPAAVSDLRAALEL---------- 638 (987)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------
Confidence 3344556666779999999999999988 576 8899999999998876643311 000000
Q ss_pred ccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011759 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (478)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~ 225 (478)
++..... . -..+-.-...++++.|+++|+.|+.+
T Consensus 639 --------~Pd~~~a--------------~--------------------~nLG~aL~~~G~~eeAi~~l~~AL~l---- 672 (987)
T PRK09782 639 --------EPNNSNY--------------Q--------------------AALGYALWDSGDIAQSREMLERAHKG---- 672 (987)
T ss_pred --------CCCCHHH--------------H--------------------HHHHHHHHHCCCHHHHHHHHHHHHHh----
Confidence 0000000 0 00000001225566666666666544
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 011759 226 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (478)
Q Consensus 226 l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~ 305 (478)
.|..+.++.+||.++..+|+|++|+.+|++++++.. ..|.+++.+|..+....++..|++.|+++..+-
T Consensus 673 ---~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P--------~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 673 ---LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID--------NQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred ---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--------CCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 466789999999999999999999999999998874 447888889998888888888888888877664
Q ss_pred HHH
Q 011759 306 KSR 308 (478)
Q Consensus 306 k~r 308 (478)
...
T Consensus 742 ~~~ 744 (987)
T PRK09782 742 FDS 744 (987)
T ss_pred ccc
Confidence 433
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.59 E-value=5.2e-07 Score=89.61 Aligned_cols=64 Identities=22% Similarity=0.222 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 011759 235 ILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK 306 (478)
Q Consensus 235 ~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k 306 (478)
.+..||.+++.+|++++|+..|++++.+.+.- ..++..+|.+|...|++++|..++++++.-++
T Consensus 216 ~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d--------~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l~ 279 (280)
T PF13429_consen 216 LWDALAAAYLQLGRYEEALEYLEKALKLNPDD--------PLWLLAYADALEQAGRKDEALRLRRQALRLLR 279 (280)
T ss_dssp HCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT---------HHHHHHHHHHHT--------------------
T ss_pred HHHHHHHHhccccccccccccccccccccccc--------cccccccccccccccccccccccccccccccC
Confidence 67789999999999999999999988765433 37888999999999999999999999886543
No 47
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.58 E-value=9.1e-07 Score=82.11 Aligned_cols=55 Identities=22% Similarity=0.258 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011759 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (478)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (478)
....+..++.+|..++..|+|++|+.+|.+++.+. +.+++.+.+|+.+|.+++.+
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~ 85 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASN 85 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHc
Confidence 34568889999999999999999999999999974 23445678999999999865
No 48
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.56 E-value=8.9e-07 Score=84.86 Aligned_cols=104 Identities=24% Similarity=0.286 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCC
Q 011759 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (478)
Q Consensus 66 A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~ 145 (478)
+..++.+|..++..|+|++|+.+|.+|+.+ .|+.+.+|+.||.+|+...
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~aL~~~~----------------------- 121 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALATVLYYQA----------------------- 121 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhc-----------------------
Confidence 566889999999999999999999999998 7999999999999986530
Q ss_pred ccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011759 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (478)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~ 225 (478)
++ ..+..|.++|+.++.+
T Consensus 122 -------------------------------------g~---------------------~~~~~A~~~l~~al~~---- 139 (198)
T PRK10370 122 -------------------------------------GQ---------------------HMTPQTREMIDKALAL---- 139 (198)
T ss_pred -------------------------------------CC---------------------CCcHHHHHHHHHHHHh----
Confidence 00 1234566666666543
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 011759 226 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILER 265 (478)
Q Consensus 226 l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~ 265 (478)
.+....++++||.++++.|+|++|+.+|+++|++...
T Consensus 140 ---dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 140 ---DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred ---CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566789999999999999999999999999887653
No 49
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=4.8e-07 Score=97.21 Aligned_cols=91 Identities=19% Similarity=0.171 Sum_probs=77.5
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 285 (478)
..|..|..+|+.++...+..+...+.-.-+++|||-++..+++|++||.+|+++|.+..+. +.+|-.+|.+|
T Consensus 428 ~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~--------~~~~asig~iy 499 (611)
T KOG1173|consen 428 EEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD--------ASTHASIGYIY 499 (611)
T ss_pred hhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc--------hhHHHHHHHHH
Confidence 4677888888888754444444444567789999999999999999999999999988765 58999999999
Q ss_pred HcCCCchHHHHHHHHHHHH
Q 011759 286 EIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 286 ~~~~~~eeAl~~~ekAL~I 304 (478)
..+|+++.|+.||.+||.+
T Consensus 500 ~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 500 HLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHhcChHHHHHHHHHHHhc
Confidence 9999999999999999986
No 50
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.53 E-value=1.8e-06 Score=95.32 Aligned_cols=168 Identities=17% Similarity=0.096 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc--cCCCCCCcCCCCCC
Q 011759 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQG 142 (478)
Q Consensus 65 ~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdv--Lg~~~~~~~e~~~~ 142 (478)
.+..+..+|..++..|+|++|..+|.+++++ +|....+++.+|.+++..++.+... +-....
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-------- 187 (899)
T TIGR02917 124 AAELLALRGLAYLGLGQLELAQKSYEQALAI--------DPRSLYAKLGLAQLALAENRFDEARALIDEVLT-------- 187 (899)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHH--------
Confidence 4667788999999999999999999999886 5677788999999888875543220 000000
Q ss_pred CCCccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011759 143 SDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 222 (478)
Q Consensus 143 ~~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ 222 (478)
.++... .. . . -.+...-..++++.|...|+.++.+
T Consensus 188 ----------~~~~~~------~~---~--~-----------------------~~~~~~~~~g~~~~A~~~~~~a~~~- 222 (899)
T TIGR02917 188 ----------ADPGNV------DA---L--L-----------------------LKGDLLLSLGNIELALAAYRKAIAL- 222 (899)
T ss_pred ----------hCCCCh------HH---H--H-----------------------HHHHHHHhcCCHHHHHHHHHHHHhh-
Confidence 000000 00 0 0 0000001124566666666655432
Q ss_pred HHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 011759 223 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 302 (478)
Q Consensus 223 ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL 302 (478)
.+....++..++.+++..|+|++|...|++++.+.. ++ ..+++.+|.++...|++++|+.+|++++
T Consensus 223 ------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l 288 (899)
T TIGR02917 223 ------RPNNPAVLLALATILIEAGEFEEAEKHADALLKKAP-----NS---PLAHYLKALVDFQKKNYEDARETLQDAL 288 (899)
T ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CC---chHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 345677899999999999999999999999887532 23 3578889999999999999999999999
Q ss_pred HHHHH
Q 011759 303 SVCKS 307 (478)
Q Consensus 303 ~I~k~ 307 (478)
.+...
T Consensus 289 ~~~~~ 293 (899)
T TIGR02917 289 KSAPE 293 (899)
T ss_pred HhCCC
Confidence 87643
No 51
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.53 E-value=1.7e-06 Score=80.29 Aligned_cols=85 Identities=13% Similarity=0.162 Sum_probs=72.0
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 285 (478)
++|+.|..+|+....+ .+..++-|.+||-++..+|+|.+||..|.+|+.|.... +.+|+++|.||
T Consensus 49 G~l~~A~~~f~~L~~~-------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd--------p~~~~~ag~c~ 113 (157)
T PRK15363 49 KEFAGAARLFQLLTIY-------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA--------PQAPWAAAECY 113 (157)
T ss_pred CCHHHHHHHHHHHHHh-------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC--------chHHHHHHHHH
Confidence 4566666555554432 45678999999999999999999999999999887533 38999999999
Q ss_pred HcCCCchHHHHHHHHHHHHH
Q 011759 286 EIGSKPQEAIPYCQKAISVC 305 (478)
Q Consensus 286 ~~~~~~eeAl~~~ekAL~I~ 305 (478)
...|+.+.|...|+.||.++
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999998
No 52
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.51 E-value=1.2e-06 Score=85.66 Aligned_cols=130 Identities=17% Similarity=0.107 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCC
Q 011759 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (478)
Q Consensus 66 A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~ 145 (478)
......++-.+...|+.+.|-+.|.+|+.+ +|..++++++||.-|+..+
T Consensus 69 ~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--------~p~~GdVLNNYG~FLC~qg----------------------- 117 (250)
T COG3063 69 YLAHLVRAHYYQKLGENDLADESYRKALSL--------APNNGDVLNNYGAFLCAQG----------------------- 117 (250)
T ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHhc--------CCCccchhhhhhHHHHhCC-----------------------
Confidence 344566777788899999999999999998 8999999999999999762
Q ss_pred ccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011759 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (478)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~ 225 (478)
.++.|..+|+.|..
T Consensus 118 -------------------------------------------------------------~~~eA~q~F~~Al~----- 131 (250)
T COG3063 118 -------------------------------------------------------------RPEEAMQQFERALA----- 131 (250)
T ss_pred -------------------------------------------------------------ChHHHHHHHHHHHh-----
Confidence 24456666666653
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 011759 226 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 300 (478)
Q Consensus 226 l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ek 300 (478)
...-...+++|.|+|.+.+..|+|++|..+|+++|++..... .+...|+..+...++|-.|.-+|++
T Consensus 132 ~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~--------~~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 132 DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP--------PALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC--------hHHHHHHHHHHhcccchHHHHHHHH
Confidence 122356789999999999999999999999999999987653 5666777778888999999887765
No 53
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.47 E-value=2.2e-06 Score=72.42 Aligned_cols=91 Identities=12% Similarity=0.049 Sum_probs=75.0
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 285 (478)
++++.|.+.|+.++..+ . .++....+++.+|.+++..++|++|+..|++++... ++++.+..+++++|.+|
T Consensus 16 ~~~~~A~~~~~~~~~~~---~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 16 GDYADAIQAFQAFLKKY---P-KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKSPKAPDALLKLGMSL 86 (119)
T ss_pred CCHHHHHHHHHHHHHHC---C-CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCCCcccHHHHHHHHHH
Confidence 56777777777776442 1 234457899999999999999999999999999754 56667789999999999
Q ss_pred HcCCCchHHHHHHHHHHHHH
Q 011759 286 EIGSKPQEAIPYCQKAISVC 305 (478)
Q Consensus 286 ~~~~~~eeAl~~~ekAL~I~ 305 (478)
...+++++|+.+|++++...
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHhCChHHHHHHHHHHHHHC
Confidence 99999999999999988763
No 54
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.46 E-value=4.1e-06 Score=70.80 Aligned_cols=105 Identities=22% Similarity=0.188 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCC
Q 011759 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (478)
Q Consensus 66 A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~ 145 (478)
++.++.+|..++..|+|++|+.+|.+++.. + +.++....++|.+|.+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~~~~~~l~~~~~~~------------------------ 52 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKK----Y-PKSTYAPNAHYWLGEAYYAQ------------------------ 52 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----C-CCccccHHHHHHHHHHHHhh------------------------
Confidence 467899999999999999999999999875 2 23445578999999999864
Q ss_pred ccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011759 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (478)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~ 225 (478)
++++.|..+|+.++..+-
T Consensus 53 ------------------------------------------------------------~~~~~A~~~~~~~~~~~p-- 70 (119)
T TIGR02795 53 ------------------------------------------------------------GKYADAAKAFLAVVKKYP-- 70 (119)
T ss_pred ------------------------------------------------------------ccHHHHHHHHHHHHHHCC--
Confidence 456777777777765432
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 011759 226 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTIL 263 (478)
Q Consensus 226 l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~ 263 (478)
.+.....++..+|.++...+++++|+.+|.+++...
T Consensus 71 --~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 71 --KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred --CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 223457889999999999999999999999999884
No 55
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.46 E-value=6.2e-06 Score=76.50 Aligned_cols=97 Identities=12% Similarity=0.102 Sum_probs=69.3
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 285 (478)
++++.|+.+|+.++.+... ....+.+|.+||.++...|+|++|+..|++++.+.. .....|+++|.+|
T Consensus 49 g~~~~A~~~~~~al~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~ 116 (172)
T PRK02603 49 GEYAEALENYEEALKLEED----PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP--------KQPSALNNIAVIY 116 (172)
T ss_pred CCHHHHHHHHHHHHHHhhc----cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------ccHHHHHHHHHHH
Confidence 4677888888888766432 234578999999999999999999999999999743 2357788888888
Q ss_pred HcCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 011759 286 EIGSKPQEAIPYCQKAISVCKSRVQRLLN 314 (478)
Q Consensus 286 ~~~~~~eeAl~~~ekAL~I~k~rl~~l~~ 314 (478)
...+++..|...+++|+..++.-+..++.
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~ 145 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQ 145 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHH
Confidence 88776554444444444444444444433
No 56
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.45 E-value=9.4e-06 Score=92.93 Aligned_cols=153 Identities=17% Similarity=0.060 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCC
Q 011759 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (478)
Q Consensus 66 A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~ 145 (478)
+..+..+|..++..|+|++|..++.+++++... ......+.+++.+|.+++..
T Consensus 452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~a~~~lg~~~~~~------------------------ 504 (903)
T PRK04841 452 AEFNALRAQVAINDGDPEEAERLAELALAELPL---TWYYSRIVATSVLGEVHHCK------------------------ 504 (903)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---ccHHHHHHHHHHHHHHHHHc------------------------
Confidence 444556888999999999999999999985211 11122344556666665432
Q ss_pred ccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011759 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (478)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~ 225 (478)
++++.|...++.++.++...
T Consensus 505 ------------------------------------------------------------G~~~~A~~~~~~al~~~~~~ 524 (903)
T PRK04841 505 ------------------------------------------------------------GELARALAMMQQTEQMARQH 524 (903)
T ss_pred ------------------------------------------------------------CCHHHHHHHHHHHHHHHhhh
Confidence 56788889999999888764
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 011759 226 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (478)
Q Consensus 226 l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~ 305 (478)
+.....+.++.+||.+++..|++++|..++++++.+.....+..++..+.++..+|.++...|++++|+.++++++.+.
T Consensus 525 -g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 525 -DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred -cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence 3333457789999999999999999999999999999987666666666778889999999999999999999988875
Q ss_pred H
Q 011759 306 K 306 (478)
Q Consensus 306 k 306 (478)
.
T Consensus 604 ~ 604 (903)
T PRK04841 604 S 604 (903)
T ss_pred h
Confidence 4
No 57
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.42 E-value=3.1e-05 Score=69.97 Aligned_cols=139 Identities=24% Similarity=0.160 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCC
Q 011759 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQ 141 (478)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~ 141 (478)
..+.+..++......+..+++..+...|.+... .|+. .+.-..+++.+|++++..
T Consensus 7 ~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~----~~~~-s~ya~~A~l~lA~~~~~~-------------------- 61 (145)
T PF09976_consen 7 QAEQASALYEQALQALQAGDPAKAEAAAEQLAK----DYPS-SPYAALAALQLAKAAYEQ-------------------- 61 (145)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HCCC-ChHHHHHHHHHHHHHHHC--------------------
Confidence 345678888888888889999998665555444 4444 355577888888888753
Q ss_pred CCCCccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHH
Q 011759 142 GSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAI 221 (478)
Q Consensus 142 ~~~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I 221 (478)
++|+.|.+.|+.+..-
T Consensus 62 ----------------------------------------------------------------g~~~~A~~~l~~~~~~ 77 (145)
T PF09976_consen 62 ----------------------------------------------------------------GDYDEAKAALEKALAN 77 (145)
T ss_pred ----------------------------------------------------------------CCHHHHHHHHHHHHhh
Confidence 4677777777665542
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 011759 222 AEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKA 301 (478)
Q Consensus 222 ~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekA 301 (478)
. .+..-...++..||.|++..|+|++|+..++. + +....-+..+..+|.+|...|++++|+..|++|
T Consensus 78 ---~-~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-------~--~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 78 ---A-PDPELKPLARLRLARILLQQGQYDEALATLQQ-------I--PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred ---C-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-------c--cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 1 11222456788999999999999999998855 2 233345678889999999999999999999998
Q ss_pred H
Q 011759 302 I 302 (478)
Q Consensus 302 L 302 (478)
|
T Consensus 145 l 145 (145)
T PF09976_consen 145 L 145 (145)
T ss_pred C
Confidence 6
No 58
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.40 E-value=1.2e-05 Score=70.39 Aligned_cols=100 Identities=15% Similarity=0.120 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCC
Q 011759 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (478)
Q Consensus 66 A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~ 145 (478)
+..++.+|..++..|+|.+|..+|.+++.+ +|....+++.+|.+++..
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~------------------------ 64 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQML------------------------ 64 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHH------------------------
Confidence 456889999999999999999999999987 678889999999999876
Q ss_pred ccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011759 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (478)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~ 225 (478)
+++..|..+|+.++.+
T Consensus 65 ------------------------------------------------------------~~~~~A~~~~~~~~~~---- 80 (135)
T TIGR02552 65 ------------------------------------------------------------KEYEEAIDAYALAAAL---- 80 (135)
T ss_pred ------------------------------------------------------------HHHHHHHHHHHHHHhc----
Confidence 3455666666666554
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011759 226 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 264 (478)
Q Consensus 226 l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~ 264 (478)
.+...+.|..+|.++...|+|++|+..|++++++..
T Consensus 81 ---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 81 ---DPDDPRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred ---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 345688999999999999999999999999999764
No 59
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.40 E-value=1.6e-05 Score=91.03 Aligned_cols=152 Identities=11% Similarity=0.024 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCC
Q 011759 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (478)
Q Consensus 66 A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~ 145 (478)
+..+..+|..++..|+|++|..+|.+++.+.. .+|..+.. +.+++++|.+++..
T Consensus 491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~-~~g~~~~~-~~~~~~la~~~~~~------------------------ 544 (903)
T PRK04841 491 IVATSVLGEVHHCKGELARALAMMQQTEQMAR-QHDVYHYA-LWSLLQQSEILFAQ------------------------ 544 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-hhcchHHH-HHHHHHHHHHHHHC------------------------
Confidence 44567789999999999999999999999866 46665544 44677888887654
Q ss_pred ccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011759 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (478)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~ 225 (478)
++++.|...++.++.+..+.
T Consensus 545 ------------------------------------------------------------G~~~~A~~~~~~al~~~~~~ 564 (903)
T PRK04841 545 ------------------------------------------------------------GFLQAAYETQEKAFQLIEEQ 564 (903)
T ss_pred ------------------------------------------------------------CCHHHHHHHHHHHHHHHHHh
Confidence 56778888888888888775
Q ss_pred cC-CCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 011759 226 WG-DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 226 l~-~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I 304 (478)
.. ..+..+.++..+|.+++..|++++|...+++++.+..... .+..+.++..+|.++...|++++|..++++++.+
T Consensus 565 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~ 641 (903)
T PRK04841 565 HLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ---PQQQLQCLAMLAKISLARGDLDNARRYLNRLENL 641 (903)
T ss_pred ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 43 2233456688999999999999999999999999987543 2345678889999999999999999999999887
Q ss_pred HH
Q 011759 305 CK 306 (478)
Q Consensus 305 ~k 306 (478)
..
T Consensus 642 ~~ 643 (903)
T PRK04841 642 LG 643 (903)
T ss_pred Hh
Confidence 54
No 60
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.37 E-value=8.3e-06 Score=89.09 Aligned_cols=142 Identities=18% Similarity=0.108 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCC
Q 011759 65 FADELMEKGTNALKESD---YGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQ 141 (478)
Q Consensus 65 ~A~~L~~~G~~~~~~gd---y~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~ 141 (478)
.|-.|+-+|..++..++ +..|+.||.+|+++ .|..+.+|-.++.++...... . +
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~-----~--~-------- 394 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQ-----Q--P-------- 394 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhc-----C--C--------
Confidence 46778888888877655 89999999999999 899999998888777543110 0 0
Q ss_pred CCCCccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHH
Q 011759 142 GSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAI 221 (478)
Q Consensus 142 ~~~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I 221 (478)
.+..++..+...++.+..+
T Consensus 395 -------------------------------------------------------------~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 395 -------------------------------------------------------------LDEKQLAALSTELDNIVAL 413 (517)
T ss_pred -------------------------------------------------------------ccHHHHHHHHHHHHHhhhc
Confidence 0012344444444433322
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 011759 222 AEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKA 301 (478)
Q Consensus 222 ~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekA 301 (478)
...+....+|..+|.+++..|++++|...|++|+.+.. . +.+|+.+|.+|.+.|++++|+++|++|
T Consensus 414 -----~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p--------s-~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 414 -----PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM--------S-WLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred -----ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--------C-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11122357899999999999999999999999999983 1 589999999999999999999999999
Q ss_pred HHH
Q 011759 302 ISV 304 (478)
Q Consensus 302 L~I 304 (478)
+.+
T Consensus 480 ~~L 482 (517)
T PRK10153 480 FNL 482 (517)
T ss_pred Hhc
Confidence 975
No 61
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=98.37 E-value=3.4e-06 Score=97.85 Aligned_cols=164 Identities=23% Similarity=0.185 Sum_probs=147.4
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCC
Q 011759 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQ 141 (478)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~ 141 (478)
+..++......|...+.++.|.+|.+ ..+++.++..+||.+||+++..|-.+.+.+..+
T Consensus 928 ~~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~-------------------- 986 (1236)
T KOG1839|consen 928 TVSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRL-------------------- 986 (1236)
T ss_pred ccchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhh--------------------
Confidence 34678999999999999999999999 999999999999999999999999999888765
Q ss_pred CCCCccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHH
Q 011759 142 GSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAI 221 (478)
Q Consensus 142 ~~~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I 221 (478)
.|.+.|..+-..|..|
T Consensus 987 ----------------------------------------------------------------~d~~~Ai~~~~ka~ii 1002 (1236)
T KOG1839|consen 987 ----------------------------------------------------------------GDNQEAIAQQRKACII 1002 (1236)
T ss_pred ----------------------------------------------------------------cchHHHHHhcccceee
Confidence 2345566666788889
Q ss_pred HHHhcC-CCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 011759 222 AEKHWG-DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 300 (478)
Q Consensus 222 ~ek~l~-~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ek 300 (478)
++|.++ ++++.+..|.+|+...+..++...|+..+.+++.+..-.+|++||..|.+..+|++.+...++++-|+.+.+.
T Consensus 1003 ~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~ 1082 (1236)
T KOG1839|consen 1003 SERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLES 1082 (1236)
T ss_pred echhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHH
Confidence 999888 6789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 011759 301 AISVCKSRVQ 310 (478)
Q Consensus 301 AL~I~k~rl~ 310 (478)
|+++-+..+.
T Consensus 1083 A~a~~~~v~g 1092 (1236)
T KOG1839|consen 1083 ALAKNKKVLG 1092 (1236)
T ss_pred HHHHHhhhcC
Confidence 9996554443
No 62
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.36 E-value=1.5e-05 Score=80.92 Aligned_cols=172 Identities=12% Similarity=-0.044 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCCc
Q 011759 67 DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKD 146 (478)
Q Consensus 67 ~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~d 146 (478)
..+..+|..++..|+|++|..+|.++++. +|....++.. +.+++..+...... ....
T Consensus 44 e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~-~~~~~~~~~~~~~~-~~~~------------- 100 (355)
T cd05804 44 ERAHVEALSAWIAGDLPKALALLEQLLDD--------YPRDLLALKL-HLGAFGLGDFSGMR-DHVA------------- 100 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHH-hHHHHHhcccccCc-hhHH-------------
Confidence 34556888999999999999999999987 6766666665 66666654321110 0000
Q ss_pred cccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHhc
Q 011759 147 DSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHW 226 (478)
Q Consensus 147 e~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~l 226 (478)
..... ..+ ....... .. -..+......++++.|..+++.++.+
T Consensus 101 ~~l~~-~~~-----------------~~~~~~~---~~-----------~~~a~~~~~~G~~~~A~~~~~~al~~----- 143 (355)
T cd05804 101 RVLPL-WAP-----------------ENPDYWY---LL-----------GMLAFGLEEAGQYDRAEEAARRALEL----- 143 (355)
T ss_pred HHHhc-cCc-----------------CCCCcHH---HH-----------HHHHHHHHHcCCHHHHHHHHHHHHhh-----
Confidence 00000 000 0000000 00 00000011234555555555544443
Q ss_pred CCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 011759 227 GDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 227 ~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I 304 (478)
.+..+.+|..||.++.+.|++++|+.+|++++.+... +.......|+.++.+|...|++++|+.+|++++..
T Consensus 144 --~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 144 --NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC----SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred --CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 3445778999999999999999999999999987653 22233567889999999999999999999998643
No 63
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.36 E-value=9.7e-07 Score=88.99 Aligned_cols=100 Identities=19% Similarity=0.097 Sum_probs=81.3
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 285 (478)
.+|+.|...|..|+. ..+.-|--|.+-+.+|.++|.|+.|+.+.++||.|-..+ ..+|.+||++|
T Consensus 95 ~~Y~eAv~kY~~AI~-------l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y--------skay~RLG~A~ 159 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIE-------LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY--------SKAYGRLGLAY 159 (304)
T ss_pred hhHHHHHHHHHHHHh-------cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH--------HHHHHHHHHHH
Confidence 566666655555554 356677889999999999999999999999999997765 59999999999
Q ss_pred HcCCCchHHHHHHHHHHHH------HHHHHHHHHHHHHhhc
Q 011759 286 EIGSKPQEAIPYCQKAISV------CKSRVQRLLNEVKSLG 320 (478)
Q Consensus 286 ~~~~~~eeAl~~~ekAL~I------~k~rl~~l~~~l~~~~ 320 (478)
.-+|+|.+|++.|+|||+| ++..|...+.++....
T Consensus 160 ~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 160 LALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999976 5666666666555443
No 64
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.35 E-value=1.3e-06 Score=90.86 Aligned_cols=85 Identities=16% Similarity=0.171 Sum_probs=74.0
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 285 (478)
++|+.|.+.|+.|+.+ .+..+.+|.++|.+++.+|+|++|+.+|+++|.+... .+.+|++||.+|
T Consensus 16 ~~~~~Ai~~~~~Al~~-------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~--------~~~a~~~lg~~~ 80 (356)
T PLN03088 16 DDFALAVDLYTQAIDL-------DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS--------LAKAYLRKGTAC 80 (356)
T ss_pred CCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--------CHHHHHHHHHHH
Confidence 6788888888777654 3456789999999999999999999999999998543 368899999999
Q ss_pred HcCCCchHHHHHHHHHHHHH
Q 011759 286 EIGSKPQEAIPYCQKAISVC 305 (478)
Q Consensus 286 ~~~~~~eeAl~~~ekAL~I~ 305 (478)
..+|+|++|+.+|++++.+.
T Consensus 81 ~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred HHhCCHHHHHHHHHHHHHhC
Confidence 99999999999999999874
No 65
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=5e-06 Score=88.42 Aligned_cols=180 Identities=21% Similarity=0.176 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCC
Q 011759 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (478)
Q Consensus 66 A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~ 145 (478)
.+.|..+|...+..++|++|+.-|++|.+| .|+++-+|..+++++|+.++.++.+-+.
T Consensus 394 ~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--------~pe~~~~~iQl~~a~Yr~~k~~~~m~~F-------------- 451 (606)
T KOG0547|consen 394 PDVYYHRGQMRFLLQQYEEAIADFQKAISL--------DPENAYAYIQLCCALYRQHKIAESMKTF-------------- 451 (606)
T ss_pred CchhHhHHHHHHHHHHHHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 788999999999999999999999999998 8999999999999999997654432221
Q ss_pred ccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011759 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (478)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~ 225 (478)
.+..+ .+..-++ -.+. -++.--|..+|+.|.++|+.|+.+-.+.
T Consensus 452 ee~kk----------kFP~~~E---vy~~-----------------------fAeiLtDqqqFd~A~k~YD~ai~LE~~~ 495 (606)
T KOG0547|consen 452 EEAKK----------KFPNCPE---VYNL-----------------------FAEILTDQQQFDKAVKQYDKAIELEPRE 495 (606)
T ss_pred HHHHH----------hCCCCch---HHHH-----------------------HHHHHhhHHhHHHHHHHHHHHHhhcccc
Confidence 00000 0000000 0000 0011124579999999999998875543
Q ss_pred cCCCchHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 011759 226 WGDSMEKV-DILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 226 l~~~~~~A-d~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I 304 (478)
..-+...+ -+|-.|- +....++|.+|+..+.+|+++-.+.- .+|-.||.....+++.++||++|++++.+
T Consensus 496 ~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dpkce--------~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 496 HLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELDPKCE--------QAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred ccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccCchHH--------HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 22112222 1222232 23366999999999999999887664 77889999999999999999999999988
Q ss_pred HHHHHHHH
Q 011759 305 CKSRVQRL 312 (478)
Q Consensus 305 ~k~rl~~l 312 (478)
-+...+.+
T Consensus 567 Art~~E~~ 574 (606)
T KOG0547|consen 567 ARTESEMV 574 (606)
T ss_pred HHhHHHHH
Confidence 77665544
No 66
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=1.9e-06 Score=91.45 Aligned_cols=186 Identities=16% Similarity=0.172 Sum_probs=124.6
Q ss_pred CCCCCccCCchhhhHHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccC
Q 011759 49 ETSGAIADGEREKTVEFA--DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEA 126 (478)
Q Consensus 49 ~~~~~~~~~~~~~~l~~A--~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~es 126 (478)
|.-+...|++....|..+ .-|+-+|..++...+-.+-...|..|..| +|++.++||.-|..+|-+.+++.
T Consensus 341 ~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l--------dp~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 341 DSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL--------DPENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred CchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc--------CCCCCchhHhHHHHHHHHHHHHH
Confidence 344556678887776653 23899999999999999999999999998 89999999999999998866643
Q ss_pred CccCCCCCCcCCCCCCCCCccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcC
Q 011759 127 DPLVSVPKKEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDES 206 (478)
Q Consensus 127 dvLg~~~~~~~e~~~~~~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~d 206 (478)
.+--. ++. + ..+ .+-...
T Consensus 413 A~aDF--------------~Ka-------------i--------~L~---------------------------pe~~~~ 430 (606)
T KOG0547|consen 413 AIADF--------------QKA-------------I--------SLD---------------------------PENAYA 430 (606)
T ss_pred HHHHH--------------HHH-------------h--------hcC---------------------------hhhhHH
Confidence 22100 000 0 000 001123
Q ss_pred hHHHHHHHHHHH-----HHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 011759 207 DLDLAWKMLDVA-----RAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRI 281 (478)
Q Consensus 207 dle~AwE~Le~A-----r~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~L 281 (478)
..|++.-.|... ...|+.....-|...+||+..|+|...+++|++|+..|.+|+.+-+...+ -+..++..-++-
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~-~~v~~~plV~Ka 509 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHL-IIVNAAPLVHKA 509 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccc-ccccchhhhhhh
Confidence 344444433322 12222221122567899999999999999999999999999998776322 122233333333
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHH
Q 011759 282 CLCLEIGSKPQEAIPYCQKAISVC 305 (478)
Q Consensus 282 G~ay~~~~~~eeAl~~~ekAL~I~ 305 (478)
=+++.+.+++.+|+..+.+|+++-
T Consensus 510 ~l~~qwk~d~~~a~~Ll~KA~e~D 533 (606)
T KOG0547|consen 510 LLVLQWKEDINQAENLLRKAIELD 533 (606)
T ss_pred HhhhchhhhHHHHHHHHHHHHccC
Confidence 345567789999999999999873
No 67
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.33 E-value=1.7e-06 Score=91.84 Aligned_cols=70 Identities=10% Similarity=0.197 Sum_probs=62.8
Q ss_pred chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 011759 230 MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 230 ~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I 304 (478)
+..+..|++||.+|+.+|+|++|+..|++||+|.. ++.....+|||||.||..+|++++|+.+|++||++
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P-----d~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNP-----NPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56788999999999999999999999999999964 44444467999999999999999999999999997
No 68
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.33 E-value=2e-06 Score=92.67 Aligned_cols=132 Identities=14% Similarity=0.123 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCC
Q 011759 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (478)
Q Consensus 66 A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~ 145 (478)
++-...+|..|+-.|+|++|++||+.||.. .|....+++.||-+|-.-
T Consensus 430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~------------------------ 477 (579)
T KOG1125|consen 430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANG------------------------ 477 (579)
T ss_pred hhHHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCC------------------------
Confidence 455678999999999999999999999998 799999999999888531
Q ss_pred ccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011759 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (478)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~ 225 (478)
+....|...|.+|+
T Consensus 478 ------------------------------------------------------------~~s~EAIsAY~rAL------ 491 (579)
T KOG1125|consen 478 ------------------------------------------------------------NRSEEAISAYNRAL------ 491 (579)
T ss_pred ------------------------------------------------------------cccHHHHHHHHHHH------
Confidence 11223444444444
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH--HHHHHHHHHHHcCCCchHHHH
Q 011759 226 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIA--ELNFRICLCLEIGSKPQEAIP 296 (478)
Q Consensus 226 l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iA--ea~~~LG~ay~~~~~~eeAl~ 296 (478)
..+|..+++..|||..++.+|.|.+|+.+|-.||.|+++......--.+ .++-.|=+++...++.+-+..
T Consensus 492 -qLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 492 -QLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred -hcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 4468899999999999999999999999999999999996543321111 333344455555666554433
No 69
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.33 E-value=1.1e-05 Score=74.92 Aligned_cols=103 Identities=13% Similarity=0.118 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCC
Q 011759 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQG 142 (478)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~ 142 (478)
.+..+.+...|..++..|+|++|..+|+-.|.+ .|.+++.||++|.++..+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~--------------------- 82 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQ--------------------- 82 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHH---------------------
Confidence 455778889999999999999999999999999 899999999999999865
Q ss_pred CCCccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011759 143 SDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 222 (478)
Q Consensus 143 ~~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ 222 (478)
++|+.|.+.|.+|..+
T Consensus 83 ---------------------------------------------------------------g~~~~AI~aY~~A~~L- 98 (157)
T PRK15363 83 ---------------------------------------------------------------KHWGEAIYAYGRAAQI- 98 (157)
T ss_pred ---------------------------------------------------------------hhHHHHHHHHHHHHhc-
Confidence 3566677777666644
Q ss_pred HHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011759 223 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 264 (478)
Q Consensus 223 ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~ 264 (478)
.++-+..|.++|.+++..|+.+.|+..|+.++.+.-
T Consensus 99 ------~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 99 ------KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred ------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 456678999999999999999999999999999983
No 70
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.30 E-value=1.1e-06 Score=61.81 Aligned_cols=42 Identities=29% Similarity=0.372 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q 011759 232 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRH 273 (478)
Q Consensus 232 ~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~ 273 (478)
++.++++||.+|..+|+|++|+.+|++++.|+++++|++||.
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 478999999999999999999999999999999999999984
No 71
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.26 E-value=1.2e-05 Score=91.50 Aligned_cols=130 Identities=14% Similarity=-0.001 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCC
Q 011759 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (478)
Q Consensus 66 A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~ 145 (478)
+..+..+|..+...|+|.+|+.+|.+++++ .|....+++.+|.+|+..
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~l~~~------------------------ 96 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSL--------EPQNDDYQRGLILTLADA------------------------ 96 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHC------------------------
Confidence 444777888888888888888888888887 577777777777777643
Q ss_pred ccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011759 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (478)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~ 225 (478)
++++.|..+|+.++..
T Consensus 97 ------------------------------------------------------------g~~~eA~~~l~~~l~~---- 112 (765)
T PRK10049 97 ------------------------------------------------------------GQYDEALVKAKQLVSG---- 112 (765)
T ss_pred ------------------------------------------------------------CCHHHHHHHHHHHHHh----
Confidence 3455666666655543
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 011759 226 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 303 (478)
Q Consensus 226 l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~ 303 (478)
.+..+. +..||.++...|++++|+..|++++++.... ..+++.++.+|...+.+++|+..+++++.
T Consensus 113 ---~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~--------~~~~~~la~~l~~~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 113 ---APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQT--------QQYPTEYVQALRNNRLSAPALGAIDDANL 178 (765)
T ss_pred ---CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence 345566 9999999999999999999999999986543 57888899999999999999998885443
No 72
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.25 E-value=8.7e-06 Score=62.79 Aligned_cols=97 Identities=25% Similarity=0.331 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCCcc
Q 011759 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDD 147 (478)
Q Consensus 68 ~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~de 147 (478)
.++.+|..++..|+|++|+.+|.+++.+ .|....+++.+|.+++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-------------------------- 47 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKL-------------------------- 47 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHH--------------------------
Confidence 4678999999999999999999999987 344457889999998865
Q ss_pred ccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcC
Q 011759 148 SVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWG 227 (478)
Q Consensus 148 ~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~l~ 227 (478)
++++.|.++|+.++.+..
T Consensus 48 ----------------------------------------------------------~~~~~a~~~~~~~~~~~~---- 65 (100)
T cd00189 48 ----------------------------------------------------------GKYEEALEDYEKALELDP---- 65 (100)
T ss_pred ----------------------------------------------------------HHHHHHHHHHHHHHhCCC----
Confidence 345566666666655432
Q ss_pred CCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 011759 228 DSMEKVDILSALAEVALEREDIETSLSDYQKALTIL 263 (478)
Q Consensus 228 ~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~ 263 (478)
....++..+|.++...++++.|+..|.+++.+.
T Consensus 66 ---~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 66 ---DNAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred ---cchhHHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence 223789999999999999999999999988653
No 73
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=6.3e-06 Score=88.80 Aligned_cols=172 Identities=22% Similarity=0.214 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCC--CCCCcCCCCCCC
Q 011759 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVS--VPKKEGDSQQGS 143 (478)
Q Consensus 66 A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~--~~~~~~e~~~~~ 143 (478)
+...+..|.-++..|+|.+|..+|++|..| .|.-+++|..||.++..-+..++++-.. +.+-
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-------- 375 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-------- 375 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--------
Confidence 556778888889999999999999999998 7888999999999997654443321110 0000
Q ss_pred CCccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011759 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 223 (478)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~e 223 (478)
+. |.-...--- | -..-.-+++.+|-..|..|..|+
T Consensus 376 ------------------~~------G~hlP~LYl----g----------------mey~~t~n~kLAe~Ff~~A~ai~- 410 (611)
T KOG1173|consen 376 ------------------MP------GCHLPSLYL----G----------------MEYMRTNNLKLAEKFFKQALAIA- 410 (611)
T ss_pred ------------------cc------CCcchHHHH----H----------------HHHHHhccHHHHHHHHHHHHhcC-
Confidence 00 000000000 0 00001245666666666666653
Q ss_pred HhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 011759 224 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 303 (478)
Q Consensus 224 k~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~ 303 (478)
|.---+++-||-|....+.|.+|+.+|+++|...+.++. +.+.-..++.|||.+|.++++|++||.+||+||.
T Consensus 411 ------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~-e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~ 483 (611)
T KOG1173|consen 411 ------PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN-EKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL 483 (611)
T ss_pred ------CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc-cccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 233347889999999999999999999999966666654 4447778899999999999999999999999997
Q ss_pred HH
Q 011759 304 VC 305 (478)
Q Consensus 304 I~ 305 (478)
+.
T Consensus 484 l~ 485 (611)
T KOG1173|consen 484 LS 485 (611)
T ss_pred cC
Confidence 53
No 74
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.25 E-value=2.5e-06 Score=69.81 Aligned_cols=82 Identities=21% Similarity=0.232 Sum_probs=62.3
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 285 (478)
++++.|..+++........ .. ....+..||.+++..|+|++|+..+++ +.+.... ..+++.+|.||
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~--------~~~~~l~a~~~ 68 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPT----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN--------PDIHYLLARCL 68 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCG----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH--------HHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCC----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC--------HHHHHHHHHHH
Confidence 5677777666665544321 11 455778899999999999999999999 5555433 58888999999
Q ss_pred HcCCCchHHHHHHHHH
Q 011759 286 EIGSKPQEAIPYCQKA 301 (478)
Q Consensus 286 ~~~~~~eeAl~~~ekA 301 (478)
..+++|++|+.+|++|
T Consensus 69 ~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 69 LKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHTT-HHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHhcC
Confidence 9999999999999986
No 75
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.23 E-value=1.7e-06 Score=67.13 Aligned_cols=60 Identities=20% Similarity=0.292 Sum_probs=53.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 011759 237 SALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 237 ~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I 304 (478)
..+|.+++..|+|++|+..|+++|+.. |.-+++++.||.+|..+|++++|+.+|++++.+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~--------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQD--------PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCS--------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 368999999999999999999998765 445799999999999999999999999999875
No 76
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=9.1e-06 Score=85.04 Aligned_cols=102 Identities=19% Similarity=0.194 Sum_probs=85.0
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 285 (478)
++|..|.|.|-.|+.|--. +..-.+.+|.++|.|++.+|+..+||.+...||.|-..++ .+|...|.||
T Consensus 263 G~y~~A~E~Yteal~idP~---n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syi--------kall~ra~c~ 331 (486)
T KOG0550|consen 263 GNYRKAYECYTEALNIDPS---NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYI--------KALLRRANCH 331 (486)
T ss_pred cchhHHHHHHHHhhcCCcc---ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHH--------HHHHHHHHHH
Confidence 7888999888888876322 3345799999999999999999999999999999998775 9999999999
Q ss_pred HcCCCchHHHHHHHHHHHHHH-----HHHHHHHHHHHh
Q 011759 286 EIGSKPQEAIPYCQKAISVCK-----SRVQRLLNEVKS 318 (478)
Q Consensus 286 ~~~~~~eeAl~~~ekAL~I~k-----~rl~~l~~~l~~ 318 (478)
..+++|++|++.|++|+..-+ ..+.+.+.+|+.
T Consensus 332 l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkk 369 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKK 369 (486)
T ss_pred HHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 999999999999999998743 344455555553
No 77
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=2.8e-05 Score=82.37 Aligned_cols=161 Identities=17% Similarity=0.129 Sum_probs=108.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCCccc
Q 011759 69 LMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDS 148 (478)
Q Consensus 69 L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~de~ 148 (478)
..-.|+-|-..++-++|+.+|++||.+ +|....++-+.|-=+.++-....++-..
T Consensus 333 CCiIaNYYSlr~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sY----------------- 387 (559)
T KOG1155|consen 333 CCIIANYYSLRSEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESY----------------- 387 (559)
T ss_pred eeeehhHHHHHHhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHH-----------------
Confidence 345677677777888888888888887 7888888888888777761111100000
Q ss_pred cccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHH---HHHHHHHHHh
Q 011759 149 VKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKML---DVARAIAEKH 225 (478)
Q Consensus 149 ~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~L---e~Ar~I~ek~ 225 (478)
. -+.+.+..| --..=-|..|++++ .-|+--|+|.
T Consensus 388 -R-----------------rAvdi~p~D-------------------------yRAWYGLGQaYeim~Mh~YaLyYfqkA 424 (559)
T KOG1155|consen 388 -R-----------------RAVDINPRD-------------------------YRAWYGLGQAYEIMKMHFYALYYFQKA 424 (559)
T ss_pred -H-----------------HHHhcCchh-------------------------HHHHhhhhHHHHHhcchHHHHHHHHHH
Confidence 0 000001000 00011223344443 2345556666
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 011759 226 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (478)
Q Consensus 226 l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~ 305 (478)
..-.|.=-..+..||++|..+++.++|+.+|++|+..-.-- ..+|++||..|+..+++++|..+|++-+.+.
T Consensus 425 ~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte--------~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 425 LELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE--------GSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred HhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc--------hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 65556667899999999999999999999999998765431 4789999999999999999999999999854
No 78
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.11 E-value=6.5e-05 Score=72.52 Aligned_cols=66 Identities=32% Similarity=0.383 Sum_probs=47.3
Q ss_pred CccCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011759 53 AIADGEREKTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (478)
Q Consensus 53 ~~~~~~~~~~l~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (478)
-.+|.++.+.++.++.|-..|+.+|+.|+|++|...|++||++.-... ..+-..+|.+-|-|++.+
T Consensus 82 i~~deek~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~---~e~rsIly~Nraaa~iKl 147 (271)
T KOG4234|consen 82 IFSDEEKDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS---TEERSILYSNRAAALIKL 147 (271)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc---HHHHHHHHhhhHHHHHHh
Confidence 345666777788999999999999999999999999999999842111 122334444555555544
No 79
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.10 E-value=4.8e-05 Score=85.87 Aligned_cols=136 Identities=10% Similarity=-0.015 Sum_probs=105.8
Q ss_pred HHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCC
Q 011759 64 EFADELMEKG-TNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQG 142 (478)
Q Consensus 64 ~~A~~L~~~G-~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~ 142 (478)
+...+++.+. ...-..+....+.+.+-+++.+.. . -|..+++|+++|.++...++
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~La~i~~~~g~------------------- 101 (694)
T PRK15179 46 EAGRELLQQARQVLERHAAVHKPAAALPELLDYVR-R----YPHTELFQVLVARALEAAHR------------------- 101 (694)
T ss_pred hHHHHHHHHHHHHHHHhhhhcchHhhHHHHHHHHH-h----ccccHHHHHHHHHHHHHcCC-------------------
Confidence 3345555555 344456677777777777777643 2 36678999999999988732
Q ss_pred CCCccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011759 143 SDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 222 (478)
Q Consensus 143 ~~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ 222 (478)
++.|..+|+.+..+
T Consensus 102 -----------------------------------------------------------------~~ea~~~l~~~~~~- 115 (694)
T PRK15179 102 -----------------------------------------------------------------SDEGLAVWRGIHQR- 115 (694)
T ss_pred -----------------------------------------------------------------cHHHHHHHHHHHhh-
Confidence 33455555655543
Q ss_pred HHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 011759 223 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 302 (478)
Q Consensus 223 ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL 302 (478)
.|+.+.++.+++.+....++|++|+..++++|.+-... +..|+.+|.++...|+|++|+.+|++++
T Consensus 116 ------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~--------~~~~~~~a~~l~~~g~~~~A~~~y~~~~ 181 (694)
T PRK15179 116 ------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS--------AREILLEAKSWDEIGQSEQADACFERLS 181 (694)
T ss_pred ------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC--------HHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 56789999999999999999999999999999876544 6999999999999999999999999999
Q ss_pred H
Q 011759 303 S 303 (478)
Q Consensus 303 ~ 303 (478)
.
T Consensus 182 ~ 182 (694)
T PRK15179 182 R 182 (694)
T ss_pred h
Confidence 6
No 80
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=0.0001 Score=77.12 Aligned_cols=64 Identities=17% Similarity=0.100 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 011759 233 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 233 Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I 304 (478)
.-||+||+-+++.+.+|..|+....++|.+.... .-++|+-|.||..+++|+.|+..|++|+.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N--------~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNN--------VKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc--------hhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3489999999999999999999999999988766 489999999999999999999999999875
No 81
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.06 E-value=7.5e-06 Score=57.46 Aligned_cols=42 Identities=29% Similarity=0.255 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChh
Q 011759 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALE 106 (478)
Q Consensus 65 ~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe 106 (478)
+|..|.++|..++.+|+|++|..+|.++++++.++||+.||+
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 367899999999999999999999999999999999999995
No 82
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.05 E-value=5.1e-05 Score=86.05 Aligned_cols=92 Identities=13% Similarity=0.127 Sum_probs=75.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 285 (478)
.|++.+|.+.+-|..-- ....-.++.|+.||..|..+|+|++|-.+|.+|+..-. ++ ..-.|+.||..|
T Consensus 284 ~dy~~v~~la~~ai~~t----~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~-----d~--~~l~~~GlgQm~ 352 (1018)
T KOG2002|consen 284 KDYERVWHLAEHAIKNT----ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN-----DN--FVLPLVGLGQMY 352 (1018)
T ss_pred ccHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC-----CC--ccccccchhHHH
Confidence 68899998777665432 22346789999999999999999999999999987543 22 456799999999
Q ss_pred HcCCCchHHHHHHHHHHHHHHHH
Q 011759 286 EIGSKPQEAIPYCQKAISVCKSR 308 (478)
Q Consensus 286 ~~~~~~eeAl~~~ekAL~I~k~r 308 (478)
...++++.|+-+|++.+...+..
T Consensus 353 i~~~dle~s~~~fEkv~k~~p~~ 375 (1018)
T KOG2002|consen 353 IKRGDLEESKFCFEKVLKQLPNN 375 (1018)
T ss_pred HHhchHHHHHHHHHHHHHhCcch
Confidence 99999999999999999988754
No 83
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=6.3e-05 Score=80.85 Aligned_cols=87 Identities=20% Similarity=0.150 Sum_probs=75.5
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 285 (478)
+||..|...|..|+.- .|.-+..|.|.|-+|+.+++|..|+.|.++|+++ +|.....|++-|.|+
T Consensus 372 gdy~~Av~~YteAIkr-------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p~~~kgy~RKg~al 436 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKR-------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DPNFIKAYLRKGAAL 436 (539)
T ss_pred cCHHHHHHHHHHHHhc-------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CchHHHHHHHHHHHH
Confidence 6888888888876531 3567889999999999999999999999999999 455568999999999
Q ss_pred HcCCCchHHHHHHHHHHHHHHH
Q 011759 286 EIGSKPQEAIPYCQKAISVCKS 307 (478)
Q Consensus 286 ~~~~~~eeAl~~~ekAL~I~k~ 307 (478)
..+.+|++|++.|+++++.-..
T Consensus 437 ~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 437 RAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred HHHHHHHHHHHHHHHHHhcCch
Confidence 9999999999999999987433
No 84
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.02 E-value=4.8e-05 Score=59.40 Aligned_cols=49 Identities=31% Similarity=0.478 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011759 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (478)
Q Consensus 65 ~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (478)
.|..+..+|..++..|+|++|+.+|.+|+++ +|..+.+|+++|.+++.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~ 50 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKL 50 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHh
Confidence 3778999999999999999999999999999 799999999999999986
No 85
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.02 E-value=5.2e-05 Score=85.98 Aligned_cols=216 Identities=15% Similarity=0.173 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhH-HHHHHHHHHHHHhhhhccCCccCC--CCCCcCCCCC
Q 011759 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALEC-VNAYYQYGRALLYKAQEEADPLVS--VPKKEGDSQQ 141 (478)
Q Consensus 65 ~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~-A~~y~~YG~ALl~~a~~esdvLg~--~~~~~~e~~~ 141 (478)
.+..++.+|+.++++|||++|-.+|.+++.. ++.. --.+|-+|..+++.+..+..++-. +.+..
T Consensus 306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--------~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~----- 372 (1018)
T KOG2002|consen 306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKA--------DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL----- 372 (1018)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--------CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-----
Confidence 5778999999999999999999999999886 3333 456677777777777766654331 11100
Q ss_pred CCCCccc--cccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCC-ccccccccCcChHHHHHHHHHHH
Q 011759 142 GSDKDDS--VKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDG-ENVAEADEDESDLDLAWKMLDVA 218 (478)
Q Consensus 142 ~~~~de~--~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~-E~~~e~eEd~ddle~AwE~Le~A 218 (478)
.+.-+- +.+......+. .... + +-....+++--.-...+.+. =..+.- =+..|...++..|..|
T Consensus 373 -p~~~etm~iLG~Lya~~~~---~~~~------~--d~a~~~l~K~~~~~~~d~~a~l~laql-~e~~d~~~sL~~~~~A 439 (1018)
T KOG2002|consen 373 -PNNYETMKILGCLYAHSAK---KQEK------R--DKASNVLGKVLEQTPVDSEAWLELAQL-LEQTDPWASLDAYGNA 439 (1018)
T ss_pred -cchHHHHHHHHhHHHhhhh---hhHH------H--HHHHHHHHHHHhcccccHHHHHHHHHH-HHhcChHHHHHHHHHH
Confidence 000000 00000000000 0000 0 00000000000000000000 000000 1235666678888999
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC-C-hHHHHHHHHHHHHHHcCCCchHHHH
Q 011759 219 RAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPD-S-RHIAELNFRICLCLEIGSKPQEAIP 296 (478)
Q Consensus 219 r~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d-~-r~iAea~~~LG~ay~~~~~~eeAl~ 296 (478)
+.|+..+... --..+++++|-.++.+|+|..|..+|.+|+.+.......+ + ......-|||+.|++..+++..|-+
T Consensus 440 ~d~L~~~~~~--ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e 517 (1018)
T KOG2002|consen 440 LDILESKGKQ--IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEE 517 (1018)
T ss_pred HHHHHHcCCC--CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHH
Confidence 9888877543 2367999999999999999999999999999966443333 2 1224468999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 011759 297 YCQKAISVCKSR 308 (478)
Q Consensus 297 ~~ekAL~I~k~r 308 (478)
.|..-+.-+..-
T Consensus 518 ~Yk~Ilkehp~Y 529 (1018)
T KOG2002|consen 518 MYKSILKEHPGY 529 (1018)
T ss_pred HHHHHHHHCchh
Confidence 999888765543
No 86
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=5.4e-05 Score=80.32 Aligned_cols=83 Identities=23% Similarity=0.233 Sum_probs=61.6
Q ss_pred chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH--
Q 011759 230 MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS-- 307 (478)
Q Consensus 230 ~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~-- 307 (478)
+.=-.+|.-||..|--++...=|+-+|++|+.++. +++ ..+--||.||+..++.++|+.+|.+|+..-..
T Consensus 395 p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-----nDs---Rlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~ 466 (559)
T KOG1155|consen 395 PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-----NDS---RLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG 466 (559)
T ss_pred chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-----Cch---HHHHHHHHHHHHhccHHHHHHHHHHHHhccccch
Confidence 33445777788888778877788888888776653 333 34667899999999999999999999976543
Q ss_pred ----HHHHHHHHHHhhc
Q 011759 308 ----RVQRLLNEVKSLG 320 (478)
Q Consensus 308 ----rl~~l~~~l~~~~ 320 (478)
+|+.|-++++...
T Consensus 467 ~~l~~LakLye~l~d~~ 483 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLN 483 (559)
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 7777777776553
No 87
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.01 E-value=3.7e-05 Score=62.87 Aligned_cols=83 Identities=18% Similarity=0.274 Sum_probs=63.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCCccccccccCCCCC
Q 011759 79 ESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKNAVNGESS 158 (478)
Q Consensus 79 ~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~de~~~~~~~~e~a 158 (478)
+|+|+.|+.+|.++++..-. .+ ...++|.+|.||+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~------------------------------------- 38 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQ------------------------------------- 38 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHT-------------------------------------
T ss_pred CccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHC-------------------------------------
Confidence 68999999999999998411 22 667888899999975
Q ss_pred ccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Q 011759 159 TASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSA 238 (478)
Q Consensus 159 ~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~ 238 (478)
+++..|+++|+. ..+ ......++..
T Consensus 39 -----------------------------------------------~~y~~A~~~~~~-~~~-------~~~~~~~~~l 63 (84)
T PF12895_consen 39 -----------------------------------------------GKYEEAIELLQK-LKL-------DPSNPDIHYL 63 (84)
T ss_dssp -----------------------------------------------THHHHHHHHHHC-HTH-------HHCHHHHHHH
T ss_pred -----------------------------------------------CCHHHHHHHHHH-hCC-------CCCCHHHHHH
Confidence 467777777766 211 2245788889
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 011759 239 LAEVALEREDIETSLSDYQKA 259 (478)
Q Consensus 239 LGev~le~g~feeAl~dy~kA 259 (478)
+|.+++++|+|++|+..|+++
T Consensus 64 ~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 64 LARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHhcC
Confidence 999999999999999999875
No 88
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.99 E-value=6.6e-05 Score=72.23 Aligned_cols=92 Identities=13% Similarity=0.013 Sum_probs=70.6
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 285 (478)
++++.|...|+.++.++- ..+...++|..+|.++...++|++|+..|++++++.. +++.+..++|++|.+|
T Consensus 47 ~~~~~A~~~~~~~~~~~p----~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-----~~~~~~~a~~~~g~~~ 117 (235)
T TIGR03302 47 GDYTEAIKYFEALESRYP----FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-----NHPDADYAYYLRGLSN 117 (235)
T ss_pred CCHHHHHHHHHHHHHhCC----CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-----CCCchHHHHHHHHHHH
Confidence 455566655555543321 2344567899999999999999999999999997653 5667778999999999
Q ss_pred HcC--------CCchHHHHHHHHHHHHHH
Q 011759 286 EIG--------SKPQEAIPYCQKAISVCK 306 (478)
Q Consensus 286 ~~~--------~~~eeAl~~~ekAL~I~k 306 (478)
... +++++|+.+|++++....
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 146 (235)
T TIGR03302 118 YNQIDRVDRDQTAAREAFEAFQELIRRYP 146 (235)
T ss_pred HHhcccccCCHHHHHHHHHHHHHHHHHCC
Confidence 876 778899999988876543
No 89
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.99 E-value=1.8e-05 Score=61.03 Aligned_cols=84 Identities=24% Similarity=0.265 Sum_probs=66.7
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 285 (478)
++++.|..+++.++.++ +....++..+|.++...++|++|+.+|++++.+.... + .+++.+|.+|
T Consensus 14 ~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~---~~~~~~~~~~ 78 (100)
T cd00189 14 GDYDEALEYYEKALELD-------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN-----A---KAYYNLGLAY 78 (100)
T ss_pred hcHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-----h---hHHHHHHHHH
Confidence 45666666666555442 2234789999999999999999999999998864332 2 7899999999
Q ss_pred HcCCCchHHHHHHHHHHHH
Q 011759 286 EIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 286 ~~~~~~eeAl~~~ekAL~I 304 (478)
...+++++|+.+|++++.+
T Consensus 79 ~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 79 YKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHhHHHHHHHHHHHHcc
Confidence 9999999999999998865
No 90
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.98 E-value=9.7e-05 Score=84.21 Aligned_cols=126 Identities=10% Similarity=0.039 Sum_probs=103.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCCcccccccc
Q 011759 74 TNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKNAV 153 (478)
Q Consensus 74 ~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~de~~~~~~ 153 (478)
.++.-.|++++|+..|.+++.+ .|..+.+|..+|.++...
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~--------~~~~a~~~~~lA~~~~~~-------------------------------- 62 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVH--------MQLPARGYAAVAVAYRNL-------------------------------- 62 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHc--------------------------------
Confidence 4556899999999999998875 578888999999999764
Q ss_pred CCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcCCCchHH
Q 011759 154 NGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKV 233 (478)
Q Consensus 154 ~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~l~~~~~~A 233 (478)
++++.|.+.|+.++.+ .+.-.
T Consensus 63 ----------------------------------------------------g~~~~A~~~~~~al~~-------~P~~~ 83 (765)
T PRK10049 63 ----------------------------------------------------KQWQNSLTLWQKALSL-------EPQND 83 (765)
T ss_pred ----------------------------------------------------CCHHHHHHHHHHHHHh-------CCCCH
Confidence 3456677666666543 23446
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Q 011759 234 DILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 307 (478)
Q Consensus 234 d~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~ 307 (478)
.++..||.+++..|++++|+..+++++.+... + +. ++.||.+|...+++++|+.+|++++.+...
T Consensus 84 ~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~-----~---~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~ 148 (765)
T PRK10049 84 DYQRGLILTLADAGQYDEALVKAKQLVSGAPD-----K---AN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ 148 (765)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----C---HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 78889999999999999999999999987433 2 35 999999999999999999999999997543
No 91
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.97 E-value=4.7e-05 Score=76.41 Aligned_cols=95 Identities=14% Similarity=0.136 Sum_probs=76.3
Q ss_pred ChHHHHHHH------HHHHHHHHHHhcCC---CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 011759 206 SDLDLAWKM------LDVARAIAEKHWGD---SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAE 276 (478)
Q Consensus 206 ddle~AwE~------Le~Ar~I~ek~l~~---~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAe 276 (478)
.+|+.|..+ ++.|+..|.+.+.. ......+|+.||.+|+..++|++|+..|++.+... |+|+...+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~s~~~~d 218 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PKSPKAAD 218 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCcchhH
Confidence 345555443 35566666665542 33457899999999999999999999999988766 47888999
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 011759 277 LNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (478)
Q Consensus 277 a~~~LG~ay~~~~~~eeAl~~~ekAL~I~ 305 (478)
++|+||.+|...|++++|+.+|++.+..+
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 99999999999999999999999887654
No 92
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=97.96 E-value=6e-05 Score=87.82 Aligned_cols=164 Identities=18% Similarity=0.085 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCC
Q 011759 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGS 143 (478)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~ 143 (478)
+.+..|..+++.++..+++.+|+..-.+||-|.....|=.||+....|-++....+.. .
T Consensus 971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~--~------------------- 1029 (1236)
T KOG1839|consen 971 EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAV--K------------------- 1029 (1236)
T ss_pred hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhc--c-------------------
Confidence 3577778899999999999999999999999999999999999999998886333322 0
Q ss_pred CCccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011759 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 223 (478)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~e 223 (478)
....|...+.+|+.+..
T Consensus 1030 ---------------------------------------------------------------~~~~al~~~~ra~~l~~ 1046 (1236)
T KOG1839|consen 1030 ---------------------------------------------------------------NLSGALKSLNRALKLKL 1046 (1236)
T ss_pred ---------------------------------------------------------------CccchhhhHHHHHHhhc
Confidence 01123444555554443
Q ss_pred HhcC-CCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 011759 224 KHWG-DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 302 (478)
Q Consensus 224 k~l~-~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL 302 (478)
=..+ ++|..+.+..+|+.+++..++|+.|+.+.+.|+++.++++++.+-..+.+|..++..+...+++..|+.+.+.+.
T Consensus 1047 Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~ 1126 (1236)
T KOG1839|consen 1047 LSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTY 1126 (1236)
T ss_pred cccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence 3323 588999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 011759 303 SVCKSRVQR 311 (478)
Q Consensus 303 ~I~k~rl~~ 311 (478)
.|++..++.
T Consensus 1127 ~iy~~qlg~ 1135 (1236)
T KOG1839|consen 1127 GIYKEQLGP 1135 (1236)
T ss_pred HHHHHhhCC
Confidence 998877653
No 93
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.96 E-value=2.5e-05 Score=82.46 Aligned_cols=47 Identities=30% Similarity=0.429 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh
Q 011759 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLY 120 (478)
Q Consensus 66 A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~ 120 (478)
+..|.++|...|..|||++|++.|.+||.- ...|.+++|++|..+-.
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~n--------dasc~ealfniglt~e~ 536 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALNN--------DASCTEALFNIGLTAEA 536 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHcC--------chHHHHHHHHhcccHHH
Confidence 778999999999999999999999999975 67899999999866543
No 94
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=0.00062 Score=71.64 Aligned_cols=79 Identities=20% Similarity=0.230 Sum_probs=68.1
Q ss_pred chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHH
Q 011759 230 MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRV 309 (478)
Q Consensus 230 ~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~rl 309 (478)
++...++-.-|+-.+..|+|..|-+.|..+|.|-+. +--..|-+|+|++.++..+|+..+||.-+..|+.|-..-|
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syi 321 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYI 321 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHH
Confidence 445677888899999999999999999999998765 3345789999999999999999999999999999876665
Q ss_pred HHH
Q 011759 310 QRL 312 (478)
Q Consensus 310 ~~l 312 (478)
..|
T Consensus 322 kal 324 (486)
T KOG0550|consen 322 KAL 324 (486)
T ss_pred HHH
Confidence 544
No 95
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.95 E-value=8.7e-05 Score=78.17 Aligned_cols=72 Identities=13% Similarity=0.106 Sum_probs=61.7
Q ss_pred hcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 011759 225 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 225 ~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I 304 (478)
.+..+++-+..+..+|.+++..++|++|..+|++++++.... ..|..|+.+|...|+.++|..+|+++|.+
T Consensus 320 ~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~---------~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 320 QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA---------YDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 333355678899999999999999999999999999985432 55778999999999999999999999876
Q ss_pred H
Q 011759 305 C 305 (478)
Q Consensus 305 ~ 305 (478)
+
T Consensus 391 ~ 391 (398)
T PRK10747 391 T 391 (398)
T ss_pred h
Confidence 4
No 96
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.00022 Score=76.80 Aligned_cols=66 Identities=24% Similarity=0.313 Sum_probs=48.4
Q ss_pred CCCCCccCCchhh-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhh
Q 011759 49 ETSGAIADGEREK-TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQ 123 (478)
Q Consensus 49 ~~~~~~~~~~~~~-~l~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~ 123 (478)
+..+..+|..... ....|..+..+|+.+|..++|..|+.+|..++++ + .....+.+.+-++++++.
T Consensus 206 ~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el--------~-~~it~~~n~aA~~~e~~~ 272 (539)
T KOG0548|consen 206 NGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL--------A-TDITYLNNIAAVYLERGK 272 (539)
T ss_pred CCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH--------h-hhhHHHHHHHHHHHhccH
Confidence 3444444433322 4456999999999999999999999999999999 3 455566677777776643
No 97
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.93 E-value=9.6e-06 Score=82.89 Aligned_cols=83 Identities=12% Similarity=0.140 Sum_probs=63.6
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHH
Q 011759 217 VARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIP 296 (478)
Q Consensus 217 ~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~ 296 (478)
+|+..|.+.+.-...-.+.|.|||.+.+-.++|+-++..|++||....+ .-.-|++|||||.+.--.|++.-|..
T Consensus 342 ~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~-----~~~aaDvWYNlg~vaV~iGD~nlA~r 416 (478)
T KOG1129|consen 342 MALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ-----PGQAADVWYNLGFVAVTIGDFNLAKR 416 (478)
T ss_pred HHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC-----cchhhhhhhccceeEEeccchHHHHH
Confidence 3444444443322334567899999999999999999999999988752 33468999999999999999999999
Q ss_pred HHHHHHHH
Q 011759 297 YCQKAISV 304 (478)
Q Consensus 297 ~~ekAL~I 304 (478)
+|+-||.-
T Consensus 417 cfrlaL~~ 424 (478)
T KOG1129|consen 417 CFRLALTS 424 (478)
T ss_pred HHHHHhcc
Confidence 99888754
No 98
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.91 E-value=0.0002 Score=64.61 Aligned_cols=98 Identities=26% Similarity=0.234 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCC
Q 011759 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (478)
Q Consensus 66 A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~ 145 (478)
....+.+|..++..|+|++|...|..++... ....-...+.+.++++++..
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~d~~l~~~a~l~LA~~~~~~------------------------ 98 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANA-----PDPELKPLARLRLARILLQQ------------------------ 98 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCHHHHHHHHHHHHHHHHHc------------------------
Confidence 4567789999999999999999999999841 22222345677788888754
Q ss_pred ccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011759 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (478)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~ 225 (478)
++++.|+..|+. .
T Consensus 99 ------------------------------------------------------------~~~d~Al~~L~~-------~ 111 (145)
T PF09976_consen 99 ------------------------------------------------------------GQYDEALATLQQ-------I 111 (145)
T ss_pred ------------------------------------------------------------CCHHHHHHHHHh-------c
Confidence 345566665533 1
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011759 226 WGDSMEKVDILSALAEVALEREDIETSLSDYQKAL 260 (478)
Q Consensus 226 l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL 260 (478)
....-...++..+|+|++..|++++|+..|++||
T Consensus 112 -~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 112 -PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred -cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 2233456788999999999999999999999986
No 99
>PLN02789 farnesyltranstransferase
Probab=97.91 E-value=0.00035 Score=72.07 Aligned_cols=40 Identities=5% Similarity=-0.100 Sum_probs=35.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011759 74 TNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (478)
Q Consensus 74 ~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (478)
..+...+++++|+.++.+++++ +|+...+++..|.+|..+
T Consensus 45 a~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L 84 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEAL 84 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHc
Confidence 3456678999999999999998 899999999999999876
No 100
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.86 E-value=3.4e-05 Score=78.98 Aligned_cols=159 Identities=16% Similarity=0.098 Sum_probs=119.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc--cCCCCCCcCCCCCCCCCcc
Q 011759 70 MEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQGSDKDD 147 (478)
Q Consensus 70 ~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdv--Lg~~~~~~~e~~~~~~~de 147 (478)
..+|+.++..|-|.+|...|+.+|+-+ ++.+.|.++.++|..+-+....+ +|....
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~---------~~~dTfllLskvY~ridQP~~AL~~~~~gld------------- 284 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF---------PHPDTFLLLSKVYQRIDQPERALLVIGEGLD------------- 284 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC---------CchhHHHHHHHHHHHhccHHHHHHHHhhhhh-------------
Confidence 468999999999999999999999863 44468899999998874443331 111100
Q ss_pred ccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcC
Q 011759 148 SVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWG 227 (478)
Q Consensus 148 ~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~l~ 227 (478)
....||-- -=..-....|++.++.|.++|...+.
T Consensus 285 -----------------------------~fP~~VT~-----------------l~g~ARi~eam~~~~~a~~lYk~vlk 318 (478)
T KOG1129|consen 285 -----------------------------SFPFDVTY-----------------LLGQARIHEAMEQQEDALQLYKLVLK 318 (478)
T ss_pred -----------------------------cCCchhhh-----------------hhhhHHHHHHHHhHHHHHHHHHHHHh
Confidence 00000000 00013566778888888999988887
Q ss_pred CCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 011759 228 DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 228 ~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I 304 (478)
.++..+++.-.+|.-|+-.++.+-|+.+|++-|.+--. + .+.+.|||+|+.+.++|+-++.+|++|+..
T Consensus 319 ~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-----s---peLf~NigLCC~yaqQ~D~~L~sf~RAlst 387 (478)
T KOG1129|consen 319 LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-----S---PELFCNIGLCCLYAQQIDLVLPSFQRALST 387 (478)
T ss_pred cCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-----C---hHHHhhHHHHHHhhcchhhhHHHHHHHHhh
Confidence 67777778888999999999999999999999887543 3 378999999999999999999999999975
No 101
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.86 E-value=0.00034 Score=78.97 Aligned_cols=135 Identities=16% Similarity=0.198 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCC
Q 011759 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (478)
Q Consensus 65 ~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~ 144 (478)
.+..|+.+++.+++.|++++|..++.+++.. .|.+..+||.+|.++-++|
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------dp~~~~ay~tL~~IyEqrG---------------------- 187 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQ--------DPRNPIAYYTLGEIYEQRG---------------------- 187 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CccchhhHHHHHHHHHHcc----------------------
Confidence 4899999999999999999999999999998 8999999999999997763
Q ss_pred CccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011759 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 224 (478)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek 224 (478)
|++.++...=+| .
T Consensus 188 --------------------------------------------------------------d~eK~l~~~llA-----A 200 (895)
T KOG2076|consen 188 --------------------------------------------------------------DIEKALNFWLLA-----A 200 (895)
T ss_pred --------------------------------------------------------------cHHHHHHHHHHH-----H
Confidence 222222111111 1
Q ss_pred hcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 011759 225 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 225 ~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I 304 (478)
|+.. ... +-|..|++.+.++|++.+|+-+|.+|+....... ..+++....|...|++..|+..|++.+..
T Consensus 201 HL~p-~d~-e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~--------~~~~ers~L~~~~G~~~~Am~~f~~l~~~ 270 (895)
T KOG2076|consen 201 HLNP-KDY-ELWKRLADLSEQLGNINQARYCYSRAIQANPSNW--------ELIYERSSLYQKTGDLKRAMETFLQLLQL 270 (895)
T ss_pred hcCC-CCh-HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcch--------HHHHHHHHHHHHhChHHHHHHHHHHHHhh
Confidence 2221 122 7888999999999999999999999998776543 67888889999999999999999998887
Q ss_pred HH
Q 011759 305 CK 306 (478)
Q Consensus 305 ~k 306 (478)
+.
T Consensus 271 ~p 272 (895)
T KOG2076|consen 271 DP 272 (895)
T ss_pred CC
Confidence 76
No 102
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.85 E-value=0.00051 Score=69.71 Aligned_cols=71 Identities=15% Similarity=0.084 Sum_probs=62.6
Q ss_pred CCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 011759 227 GDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (478)
Q Consensus 227 ~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~ 305 (478)
...+....++..+|.++..+|+|++|+..|++++.+.+.. +.+|+.||.+|...|++++|+.+|++++.+.
T Consensus 108 ~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~--------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~ 178 (355)
T cd05804 108 PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD--------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTW 178 (355)
T ss_pred cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhcc
Confidence 3456678888999999999999999999999999975433 5789999999999999999999999999864
No 103
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.84 E-value=0.00026 Score=70.32 Aligned_cols=87 Identities=21% Similarity=0.225 Sum_probs=61.5
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 285 (478)
++.+.|...|+.|+.+ .|.-.+++..|+.++++.|+++++...+....... +.++ ..+..||.+|
T Consensus 160 G~~~~A~~~~~~al~~-------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-----~~~~---~~~~~la~~~ 224 (280)
T PF13429_consen 160 GDPDKALRDYRKALEL-------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-----PDDP---DLWDALAAAY 224 (280)
T ss_dssp CHHHHHHHHHHHHHHH--------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------HTSC---CHCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc-------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-----cCHH---HHHHHHHHHh
Confidence 4555666666655543 34556788899999999999999766666555544 2232 3567889999
Q ss_pred HcCCCchHHHHHHHHHHHHHHH
Q 011759 286 EIGSKPQEAIPYCQKAISVCKS 307 (478)
Q Consensus 286 ~~~~~~eeAl~~~ekAL~I~k~ 307 (478)
...|++++|+.+|++++.....
T Consensus 225 ~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 225 LQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHT-HHHHHHHHHHHHHHSTT
T ss_pred cccccccccccccccccccccc
Confidence 9999999999999999986554
No 104
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.83 E-value=0.0021 Score=61.57 Aligned_cols=148 Identities=17% Similarity=0.113 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCC
Q 011759 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (478)
Q Consensus 65 ~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~ 144 (478)
.+..|...|..++..|+|.+|+..|.+..... +.++....+.|++|.+++..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~----------------------- 55 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQ----------------------- 55 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHT-----------------------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHc-----------------------
Confidence 37789999999999999999999999988762 56788889999999999975
Q ss_pred CccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011759 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 224 (478)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek 224 (478)
+++..|...++.-+..|
T Consensus 56 -------------------------------------------------------------~~y~~A~~~~~~fi~~y-- 72 (203)
T PF13525_consen 56 -------------------------------------------------------------GDYEEAIAAYERFIKLY-- 72 (203)
T ss_dssp -------------------------------------------------------------T-HHHHHHHHHHHHHH---
T ss_pred -------------------------------------------------------------CCHHHHHHHHHHHHHHC--
Confidence 35666655555444322
Q ss_pred hcCCCchHHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHHHHHhcC---------CCChHHHHHHHHHHHH
Q 011759 225 HWGDSMEKVDILSALAEVALERE-----------DIETSLSDYQKALTILERMVE---------PDSRHIAELNFRICLC 284 (478)
Q Consensus 225 ~l~~~~~~Ad~~~~LGev~le~g-----------~feeAl~dy~kAL~I~~~llg---------~d~r~iAea~~~LG~a 284 (478)
..++.+..++..+|.+++... ...+|+..|+..+.-....-- .-...+|.--+.+|.-
T Consensus 73 --P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~ 150 (203)
T PF13525_consen 73 --PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARF 150 (203)
T ss_dssp --TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567788888888766543 334566666655543321100 0013456667888999
Q ss_pred HHcCCCchHHHHHHHHHHHHH
Q 011759 285 LEIGSKPQEAIPYCQKAISVC 305 (478)
Q Consensus 285 y~~~~~~eeAl~~~ekAL~I~ 305 (478)
|...+.|..|+..|+..|+-+
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~y 171 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIENY 171 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHHS
T ss_pred HHHcccHHHHHHHHHHHHHHC
Confidence 999999999999988877643
No 105
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.82 E-value=0.00017 Score=71.63 Aligned_cols=122 Identities=21% Similarity=0.246 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCCcc
Q 011759 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDD 147 (478)
Q Consensus 68 ~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~de 147 (478)
-|..+|+.++..|+|..|+..|.+|+.+ .|..+++|..+|-+|.++|
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l--------~p~d~~~~~~lgaaldq~G------------------------- 148 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARL--------APTDWEAWNLLGAALDQLG------------------------- 148 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhcc--------CCCChhhhhHHHHHHHHcc-------------------------
Confidence 4455999999999999999999999998 7999999999999998762
Q ss_pred ccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcC
Q 011759 148 SVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWG 227 (478)
Q Consensus 148 ~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~l~ 227 (478)
+++.|.--|..|+.++
T Consensus 149 -----------------------------------------------------------r~~~Ar~ay~qAl~L~----- 164 (257)
T COG5010 149 -----------------------------------------------------------RFDEARRAYRQALELA----- 164 (257)
T ss_pred -----------------------------------------------------------ChhHHHHHHHHHHHhc-----
Confidence 2333443444444443
Q ss_pred CCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHH
Q 011759 228 DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIP 296 (478)
Q Consensus 228 ~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~ 296 (478)
+.-..+++|||-.|+-+|+++.|..++..+. +.++.+. .+-.||+++...+|++.+|..
T Consensus 165 --~~~p~~~nNlgms~~L~gd~~~A~~lll~a~-----l~~~ad~---~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 165 --PNEPSIANNLGMSLLLRGDLEDAETLLLPAY-----LSPAADS---RVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred --cCCchhhhhHHHHHHHcCCHHHHHHHHHHHH-----hCCCCch---HHHHHHHHHHhhcCChHHHHh
Confidence 3345689999999999999999998887663 3333333 456799999999999988854
No 106
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.76 E-value=0.00031 Score=78.32 Aligned_cols=131 Identities=22% Similarity=0.177 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCCc
Q 011759 67 DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKD 146 (478)
Q Consensus 67 ~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~d 146 (478)
.-.+..+..+...++-++|.-|+.+|-.| .|.++..||.-|..+..++
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--------~~l~~~~~~~~G~~~~~~~------------------------ 698 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASKI--------DPLSASVYYLRGLLLEVKG------------------------ 698 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhc--------chhhHHHHHHhhHHHHHHH------------------------
Confidence 33445677788889999999999999998 4999999999999998762
Q ss_pred cccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHhc
Q 011759 147 DSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHW 226 (478)
Q Consensus 147 e~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~l 226 (478)
.+..|.+.|..|+.+
T Consensus 699 ------------------------------------------------------------~~~EA~~af~~Al~l----- 713 (799)
T KOG4162|consen 699 ------------------------------------------------------------QLEEAKEAFLVALAL----- 713 (799)
T ss_pred ------------------------------------------------------------hhHHHHHHHHHHHhc-----
Confidence 233455555555543
Q ss_pred CCCchHHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 011759 227 GDSMEKVDILSALAEVALEREDIETSLS--DYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 227 ~~~~~~Ad~~~~LGev~le~g~feeAl~--dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I 304 (478)
.|+...+...||+++++.|+-.-|.. .+..+|++.... -++||+||.++..+|+.++|..+|+.|+.+
T Consensus 714 --dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n--------~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 714 --DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLN--------HEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred --CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCC--------HHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 46677899999999999998777776 888888876544 399999999999999999999999999864
No 107
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.74 E-value=0.0003 Score=66.80 Aligned_cols=35 Identities=23% Similarity=0.109 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhc
Q 011759 82 YGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQE 124 (478)
Q Consensus 82 y~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~ 124 (478)
|+.|.+.|+..... +|..++.+++.|.+|+++++.
T Consensus 7 FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqf 41 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQF 41 (186)
T ss_dssp HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhc
Confidence 44455555555444 788899999999999999765
No 108
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.72 E-value=0.00015 Score=74.75 Aligned_cols=52 Identities=25% Similarity=0.358 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011759 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (478)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (478)
-|..+-+|-.+|+.||++|+|++|++||++++.+ .|.++.+|.+-+.|||.+
T Consensus 93 LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~ 144 (536)
T KOG4648|consen 93 LLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQ 144 (536)
T ss_pred HHHhhHHHHHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHH
Confidence 3556778899999999999999999999999987 688888999999999876
No 109
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.72 E-value=7.4e-05 Score=58.87 Aligned_cols=60 Identities=25% Similarity=0.321 Sum_probs=53.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 011759 239 LAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK 306 (478)
Q Consensus 239 LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k 306 (478)
|..+|+..++|+.|+..+++++.+.+. -...|+.+|.+|...|+|.+|+..|++++++..
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~--------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPD--------DPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcc--------cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 568999999999999999999999544 358999999999999999999999999997644
No 110
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.71 E-value=0.00045 Score=69.37 Aligned_cols=104 Identities=14% Similarity=0.061 Sum_probs=78.0
Q ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCCc
Q 011759 68 ELMEKGTNA-LKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKD 146 (478)
Q Consensus 68 ~L~~~G~~~-~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~d 146 (478)
.....+..+ +..|+|++|+..|...+... +.++....++|++|.+|+..
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~------------------------- 193 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNK------------------------- 193 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHc-------------------------
Confidence 334555444 56799999999999999873 23445578999999999975
Q ss_pred cccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHhc
Q 011759 147 DSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHW 226 (478)
Q Consensus 147 e~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~l 226 (478)
++++.|...|......|
T Consensus 194 -----------------------------------------------------------g~~~~A~~~f~~vv~~y---- 210 (263)
T PRK10803 194 -----------------------------------------------------------GKKDDAAYYFASVVKNY---- 210 (263)
T ss_pred -----------------------------------------------------------CCHHHHHHHHHHHHHHC----
Confidence 34555665555444333
Q ss_pred CCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011759 227 GDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 264 (478)
Q Consensus 227 ~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~ 264 (478)
..++...+++..||.++..+|++++|+..|++.++...
T Consensus 211 P~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 211 PKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred CCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 23567899999999999999999999999998876654
No 111
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.71 E-value=0.002 Score=63.87 Aligned_cols=63 Identities=11% Similarity=-0.018 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHH
Q 011759 231 EKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYC 298 (478)
Q Consensus 231 ~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ 298 (478)
.++.-...+|..|+.+|+|.-|+.-|+..++-. |+.+..-++++.|..+|...|..++|....
T Consensus 173 ~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 173 RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 356666788889999999999999988887643 467778999999999999999999886654
No 112
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=0.00038 Score=70.77 Aligned_cols=156 Identities=15% Similarity=0.131 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCC--ccCCCCCCcCCCCCCC
Q 011759 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEAD--PLVSVPKKEGDSQQGS 143 (478)
Q Consensus 66 A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esd--vLg~~~~~~~e~~~~~ 143 (478)
-..|.-+|-.+|...+|..|++||++.+.+ ||+.+..-+.|+.+|+.-++.... |+.....
T Consensus 44 rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D--------- 106 (459)
T KOG4340|consen 44 RAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQAQSLYKACIYADALRVAFLLLD--------- 106 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcC---------
Confidence 446778999999999999999999999887 899999999999999987665332 1100000
Q ss_pred CCccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHH----HHHHH
Q 011759 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKM----LDVAR 219 (478)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~----Le~Ar 219 (478)
.+ ... +..=.|+.|..+ |--+|
T Consensus 107 -~~-~L~----------------------------------------------------~~~lqLqaAIkYse~Dl~g~r 132 (459)
T KOG4340|consen 107 -NP-ALH----------------------------------------------------SRVLQLQAAIKYSEGDLPGSR 132 (459)
T ss_pred -CH-HHH----------------------------------------------------HHHHHHHHHHhcccccCcchH
Confidence 00 000 000011111111 01134
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHH
Q 011759 220 AIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQ 299 (478)
Q Consensus 220 ~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~e 299 (478)
.+.++..+ ...|++.+++|-+...-|+|+.|+.-|+.||+.-- -.|. .-|++++|+...++|..|+++..
T Consensus 133 sLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG-----yqpl---lAYniALaHy~~~qyasALk~iS 202 (459)
T KOG4340|consen 133 SLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG-----YQPL---LAYNLALAHYSSRQYASALKHIS 202 (459)
T ss_pred HHHHhccC--CCccchhccchheeeccccHHHHHHHHHHHHhhcC-----CCch---hHHHHHHHHHhhhhHHHHHHHHH
Confidence 44444332 25789999999999999999999999999987532 2333 45899999999999999998876
Q ss_pred HHH
Q 011759 300 KAI 302 (478)
Q Consensus 300 kAL 302 (478)
.-|
T Consensus 203 EIi 205 (459)
T KOG4340|consen 203 EII 205 (459)
T ss_pred HHH
Confidence 544
No 113
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.70 E-value=0.00053 Score=78.98 Aligned_cols=150 Identities=17% Similarity=0.110 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCC
Q 011759 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (478)
Q Consensus 66 A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~ 145 (478)
...+..+...+...++|++|+.+...+++. +|.-..+||.+|..+++..+.....+-+..+.
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~---------- 92 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLLNLIDS---------- 92 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhhhhhhh----------
Confidence 566777888888999999999999988887 89999999999997777655433322111100
Q ss_pred ccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011759 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (478)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~ 225 (478)
. . ...+.... +. +|...
T Consensus 93 --------------------------------~----~--------------------~~~~~~~v-e~------~~~~i 109 (906)
T PRK14720 93 --------------------------------F----S--------------------QNLKWAIV-EH------ICDKI 109 (906)
T ss_pred --------------------------------c----c--------------------cccchhHH-HH------HHHHH
Confidence 0 0 01222211 11 11111
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 011759 226 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (478)
Q Consensus 226 l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~ 305 (478)
+ +....-.+|+.||.+|-.+|++++|...|+++|++..+ =+.++.|+|..|... ++++|+.++.+|+..+
T Consensus 110 ~-~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~--------n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 110 L-LYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD--------NPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred H-hhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc--------cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 1 12223348999999999999999999999999999833 368999999999999 9999999999999886
Q ss_pred H
Q 011759 306 K 306 (478)
Q Consensus 306 k 306 (478)
-
T Consensus 180 i 180 (906)
T PRK14720 180 I 180 (906)
T ss_pred H
Confidence 4
No 114
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.00019 Score=75.46 Aligned_cols=82 Identities=20% Similarity=0.203 Sum_probs=74.5
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHH
Q 011759 216 DVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAI 295 (478)
Q Consensus 216 e~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl 295 (478)
|.|+..|++.+...|....+-+.++++++.-|++.++|..+++.|.++... ..|..||.++.....+++|+
T Consensus 421 EKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~---------~LH~~Lgd~~~A~Ne~Q~am 491 (564)
T KOG1174|consen 421 EKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV---------NLHNHLGDIMRAQNEPQKAM 491 (564)
T ss_pred HHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc---------HHHHHHHHHHHHhhhHHHHH
Confidence 678888888877778888999999999999999999999999999998765 67899999999999999999
Q ss_pred HHHHHHHHHHH
Q 011759 296 PYCQKAISVCK 306 (478)
Q Consensus 296 ~~~ekAL~I~k 306 (478)
.||+.||.+-.
T Consensus 492 ~~y~~ALr~dP 502 (564)
T KOG1174|consen 492 EYYYKALRQDP 502 (564)
T ss_pred HHHHHHHhcCc
Confidence 99999999854
No 115
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.67 E-value=0.00062 Score=72.26 Aligned_cols=89 Identities=21% Similarity=0.212 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 011759 207 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 286 (478)
Q Consensus 207 dle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~ 286 (478)
+|..|..+.++|+.|-. .-+.++.+-|.+.+.+|+|+.|+..|+.||.-.-. -.+++||||+.+.
T Consensus 471 ~~~~aqqyad~aln~dr-------yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas--------c~ealfniglt~e 535 (840)
T KOG2003|consen 471 DFADAQQYADIALNIDR-------YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS--------CTEALFNIGLTAE 535 (840)
T ss_pred chhHHHHHHHHHhcccc-------cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH--------HHHHHHHhcccHH
Confidence 34444444455544311 12345556666666666666666666666543322 2466666666666
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHH
Q 011759 287 IGSKPQEAIPYCQKAISVCKSRVQ 310 (478)
Q Consensus 287 ~~~~~eeAl~~~ekAL~I~k~rl~ 310 (478)
.+|++++|+.+|-+--.|+....+
T Consensus 536 ~~~~ldeald~f~klh~il~nn~e 559 (840)
T KOG2003|consen 536 ALGNLDEALDCFLKLHAILLNNAE 559 (840)
T ss_pred HhcCHHHHHHHHHHHHHHHHhhHH
Confidence 666666666666666666554433
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.67 E-value=0.00045 Score=68.72 Aligned_cols=83 Identities=12% Similarity=0.089 Sum_probs=67.3
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 285 (478)
++|..|...|.+|. ...+.-...|+.||-+|...|+|+.|...|.++|++...- ..++.|||..|
T Consensus 114 g~~~~A~~~~rkA~-------~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~--------p~~~nNlgms~ 178 (257)
T COG5010 114 GNFGEAVSVLRKAA-------RLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE--------PSIANNLGMSL 178 (257)
T ss_pred cchHHHHHHHHHHh-------ccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC--------chhhhhHHHHH
Confidence 45555555444443 3345668899999999999999999999999999998643 37789999999
Q ss_pred HcCCCchHHHHHHHHHHH
Q 011759 286 EIGSKPQEAIPYCQKAIS 303 (478)
Q Consensus 286 ~~~~~~eeAl~~~ekAL~ 303 (478)
...|+++.|..++.++..
T Consensus 179 ~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 179 LLRGDLEDAETLLLPAYL 196 (257)
T ss_pred HHcCCHHHHHHHHHHHHh
Confidence 999999999999887664
No 117
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.66 E-value=0.00095 Score=70.51 Aligned_cols=64 Identities=13% Similarity=0.105 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH--HHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 011759 233 VDILSALAEVALEREDIETSLSDYQK--ALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (478)
Q Consensus 233 Ad~~~~LGev~le~g~feeAl~dy~k--AL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~ 305 (478)
+..+..||.+++..|+|++|..+|++ ++++.. ++ +.+..||.+|...|+.++|..+|++++...
T Consensus 335 ~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-----~~----~~~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 335 CCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-----DA----NDLAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-----CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 37889999999999999999999995 544432 11 346688999999999999999999988753
No 118
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00022 Score=70.45 Aligned_cols=107 Identities=20% Similarity=0.213 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCC
Q 011759 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGS 143 (478)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~ 143 (478)
.-+..|..+|++++.-++|+.|++||.+|+-+ +|-++.+|-+-..|++.+
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~---------------------- 57 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKL---------------------- 57 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHh----------------------
Confidence 34788899999999999999999999999998 899999999888888765
Q ss_pred CCccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011759 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 223 (478)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~e 223 (478)
++++...+-..+|++
T Consensus 58 --------------------------------------------------------------~~~~~v~~dcrralq--- 72 (284)
T KOG4642|consen 58 --------------------------------------------------------------KHWEPVEEDCRRALQ--- 72 (284)
T ss_pred --------------------------------------------------------------hhhhhhhhhHHHHHh---
Confidence 111111111223332
Q ss_pred HhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 011759 224 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEP 269 (478)
Q Consensus 224 k~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~ 269 (478)
-.++++..|+.||...+....|+.||..+++|+.+.+....+
T Consensus 73 ----l~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~ 114 (284)
T KOG4642|consen 73 ----LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFT 114 (284)
T ss_pred ----cChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCC
Confidence 246789999999999999999999999999999999876544
No 119
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.66 E-value=0.00054 Score=78.86 Aligned_cols=84 Identities=11% Similarity=0.096 Sum_probs=58.5
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHc--CCCchHH
Q 011759 217 VARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEI--GSKPQEA 294 (478)
Q Consensus 217 ~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~--~~~~eeA 294 (478)
.|+.+|++.+...+.-.+++..|+.++.+.+++++|+..+++++.+.... . ++ ++++|.. .+++.+|
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~---------~-~~-l~layL~~~~~~~~~A 188 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTV---------Q-NY-MTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcch---------H-HH-HHHHHHHHhcchHHHH
Confidence 34444444444345557888899999999999999999999887775431 1 22 4445544 5666679
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011759 295 IPYCQKAISVCKSRVQR 311 (478)
Q Consensus 295 l~~~ekAL~I~k~rl~~ 311 (478)
+..|+++++........
T Consensus 189 L~~~ekll~~~P~n~e~ 205 (822)
T PRK14574 189 LQASSEAVRLAPTSEEV 205 (822)
T ss_pred HHHHHHHHHhCCCCHHH
Confidence 99999999986554433
No 120
>PRK11906 transcriptional regulator; Provisional
Probab=97.62 E-value=0.00083 Score=71.85 Aligned_cols=148 Identities=18% Similarity=0.117 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCC
Q 011759 68 ELMEKGTNALKES---DYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (478)
Q Consensus 68 ~L~~~G~~~~~~g---dy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~ 144 (478)
.+.-+|..++..+ ....|..+|.+|+..+ +..|+.|.+|-.+..|++..... |..
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~-----g~~------------ 314 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALH-----GKS------------ 314 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHh-----cCC------------
Confidence 5667777776655 4567888888888221 23899999999999999976322 210
Q ss_pred CccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011759 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 224 (478)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek 224 (478)
+...+...|.+..++|..+
T Consensus 315 ----------------------------------------------------------~~~~~~~~a~~~A~rAvel--- 333 (458)
T PRK11906 315 ----------------------------------------------------------ELELAAQKALELLDYVSDI--- 333 (458)
T ss_pred ----------------------------------------------------------CchHHHHHHHHHHHHHHhc---
Confidence 0114556666555555543
Q ss_pred hcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 011759 225 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 225 ~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I 304 (478)
.+.=+.++..+|.++.-.++|+.|+..|++|+.+- |..|.+||.+|+++.+.|+.++|+.++++|+++
T Consensus 334 ----d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--------Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 334 ----TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--------TDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred ----CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 33457899999999999999999999999999875 455899999999999999999999999999988
Q ss_pred HHHHHH
Q 011759 305 CKSRVQ 310 (478)
Q Consensus 305 ~k~rl~ 310 (478)
-..|++
T Consensus 402 sP~~~~ 407 (458)
T PRK11906 402 EPRRRK 407 (458)
T ss_pred CchhhH
Confidence 665544
No 121
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.59 E-value=0.0044 Score=59.38 Aligned_cols=143 Identities=15% Similarity=0.128 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCC
Q 011759 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (478)
Q Consensus 66 A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~ 145 (478)
...++.+|..++..|+|..|+..|.+-+... +.||.+..++|+.|.+++...+.-. . .
T Consensus 42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P~~~~~~~A~Y~~g~~~~~~~~~~~----~-~------------ 99 (203)
T PF13525_consen 42 PQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----PNSPKADYALYMLGLSYYKQIPGIL----R-S------------ 99 (203)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------TT-TTHHHHHHHHHHHHHHHHHHHH------T------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCcchhhHHHHHHHHHHHhCccch----h-c------------
Confidence 4567889999999999999999999988764 5588999999999999998742210 0 0
Q ss_pred ccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011759 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (478)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~ 225 (478)
+.|......|...|+.- ..+.
T Consensus 100 --------------------------------------------------------~~D~~~~~~A~~~~~~l---i~~y 120 (203)
T PF13525_consen 100 --------------------------------------------------------DRDQTSTRKAIEEFEEL---IKRY 120 (203)
T ss_dssp --------------------------------------------------------T---HHHHHHHHHHHHH---HHH-
T ss_pred --------------------------------------------------------ccChHHHHHHHHHHHHH---HHHC
Confidence 00113344444333322 2333
Q ss_pred cCC-------------CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCch
Q 011759 226 WGD-------------SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQ 292 (478)
Q Consensus 226 l~~-------------~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~e 292 (478)
++. ...++.--..+|..|+.+|+|..|+..|+..|+-. |+.+..-++++.|..+|..+|..+
T Consensus 121 P~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 121 PNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChH
Confidence 332 12356667788999999999999999999887664 467788899999999999999987
Q ss_pred HH
Q 011759 293 EA 294 (478)
Q Consensus 293 eA 294 (478)
.|
T Consensus 196 ~a 197 (203)
T PF13525_consen 196 AA 197 (203)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 122
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.57 E-value=0.00079 Score=65.69 Aligned_cols=100 Identities=21% Similarity=0.097 Sum_probs=88.5
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh-----HHHHHHH
Q 011759 205 ESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSR-----HIAELNF 279 (478)
Q Consensus 205 ~ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r-----~iAea~~ 279 (478)
.-+++.|++.|-+|+.++.-....+..+|.++..||.+|.+.++-++...++++||....+.+..++. .-+.++|
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 47899999999999999887766667899999999999999999999999999999999998755433 3467899
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHH
Q 011759 280 RICLCLEIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 280 ~LG~ay~~~~~~eeAl~~~ekAL~I 304 (478)
-||..+.+.|++++|+..|.+.+..
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 9999999999999999999987753
No 123
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.0035 Score=61.97 Aligned_cols=91 Identities=16% Similarity=0.110 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhcCCCChHHH-HHHHHHHHH
Q 011759 207 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALER-EDIETSLSDYQKALTILERMVEPDSRHIA-ELNFRICLC 284 (478)
Q Consensus 207 dle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~-g~feeAl~dy~kAL~I~~~llg~d~r~iA-ea~~~LG~a 284 (478)
+-+.|..+|+.|..||-....- -.-|.-|..||++|-.- .+|++||.+|++|-+..+.- ++...| .++.+.+.-
T Consensus 88 ~~~eAv~cL~~aieIyt~~Grf-~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e---es~ssANKC~lKvA~y 163 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIYTDMGRF-TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE---ESVSSANKCLLKVAQY 163 (288)
T ss_pred ChHHHHHHHHHHHHHHHhhhHH-HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch---hhhhhHHHHHHHHHHH
Confidence 4456888999999999876432 23477888999998655 89999999999999888642 322222 344444444
Q ss_pred HHcCCCchHHHHHHHHH
Q 011759 285 LEIGSKPQEAIPYCQKA 301 (478)
Q Consensus 285 y~~~~~~eeAl~~~ekA 301 (478)
-...++|.+||..|++.
T Consensus 164 aa~leqY~~Ai~iyeqv 180 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQV 180 (288)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44556666666666653
No 124
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.0029 Score=69.08 Aligned_cols=72 Identities=17% Similarity=0.278 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 011759 232 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDS-------RHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 303 (478)
Q Consensus 232 ~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~-------r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~ 303 (478)
.-+.++|.+-++.+.|+|.+|++.+++|++|.++-+..++ -.|+.++.+|+.+|..+|+..+|...|...|.
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~ 252 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIK 252 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 4578899999999999999999999999999998876553 34899999999999999999999998877554
No 125
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.47 E-value=0.0016 Score=66.80 Aligned_cols=87 Identities=21% Similarity=0.279 Sum_probs=68.7
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 285 (478)
++++.|.++|..|+ ...+.-+.+-..||.|++..|+|..|+..|+..++--..+ +.++.-.|-.||
T Consensus 194 ~~~d~A~~~l~kAl-------qa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y-------l~evl~~L~~~Y 259 (389)
T COG2956 194 SDVDRARELLKKAL-------QADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY-------LSEVLEMLYECY 259 (389)
T ss_pred hhHHHHHHHHHHHH-------hhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH-------HHHHHHHHHHHH
Confidence 45555555555554 3345667788899999999999999999998877655444 579999999999
Q ss_pred HcCCCchHHHHHHHHHHHHHH
Q 011759 286 EIGSKPQEAIPYCQKAISVCK 306 (478)
Q Consensus 286 ~~~~~~eeAl~~~ekAL~I~k 306 (478)
...|+.++.+....++.+...
T Consensus 260 ~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 260 AQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHhCCHHHHHHHHHHHHHccC
Confidence 999999999999988887653
No 126
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.47 E-value=0.002 Score=64.66 Aligned_cols=105 Identities=20% Similarity=0.219 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCC
Q 011759 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (478)
Q Consensus 66 A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~ 145 (478)
+..+.+.+-.++..|||..|...|..-+.- .+..+..+++|||||.++|.++
T Consensus 141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~nA~yWLGe~~y~qg----------------------- 192 (262)
T COG1729 141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTPNAYYWLGESLYAQG----------------------- 192 (262)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccchhHHHHHHHHHhcc-----------------------
Confidence 344899999999999999999999987764 4778889999999999999862
Q ss_pred ccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011759 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (478)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~ 225 (478)
++..|-.+|..+.. .
T Consensus 193 -------------------------------------------------------------~y~~Aa~~f~~~~k----~ 207 (262)
T COG1729 193 -------------------------------------------------------------DYEDAAYIFARVVK----D 207 (262)
T ss_pred -------------------------------------------------------------cchHHHHHHHHHHH----h
Confidence 23333333332222 2
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 011759 226 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTIL 263 (478)
Q Consensus 226 l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~ 263 (478)
...++...+.++.||.+..++++-++|...|++.++=+
T Consensus 208 ~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 208 YPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred CCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 23456778999999999999999999999998876543
No 127
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.46 E-value=0.0024 Score=67.36 Aligned_cols=76 Identities=18% Similarity=0.044 Sum_probs=56.4
Q ss_pred chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH---------hcCC--------------CChHHHHHHHHHHHHHH
Q 011759 230 MEKVDILSALAEVALEREDIETSLSDYQKALTILER---------MVEP--------------DSRHIAELNFRICLCLE 286 (478)
Q Consensus 230 ~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~---------llg~--------------d~r~iAea~~~LG~ay~ 286 (478)
++...++..++..+...|++++|...++++|+.... +... .||.-+..++.+|.++.
T Consensus 260 ~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~ 339 (398)
T PRK10747 260 RHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLM 339 (398)
T ss_pred hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 345677888888888888888888888777762210 1111 13444677899999999
Q ss_pred cCCCchHHHHHHHHHHHHH
Q 011759 287 IGSKPQEAIPYCQKAISVC 305 (478)
Q Consensus 287 ~~~~~eeAl~~~ekAL~I~ 305 (478)
..++|++|..+|++++++.
T Consensus 340 ~~~~~~~A~~~le~al~~~ 358 (398)
T PRK10747 340 KHGEWQEASLAFRAALKQR 358 (398)
T ss_pred HCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999873
No 128
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.46 E-value=0.0002 Score=48.62 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 011759 275 AELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (478)
Q Consensus 275 Aea~~~LG~ay~~~~~~eeAl~~~ekAL~I~ 305 (478)
|.+|++||.+|..+++|++|+.+|++||++.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 6789999999999999999999999999874
No 129
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.45 E-value=0.00012 Score=56.78 Aligned_cols=56 Identities=16% Similarity=0.168 Sum_probs=47.6
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Q 011759 244 LEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 307 (478)
Q Consensus 244 le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~ 307 (478)
+..|+|++|+..|++++...... .++++.|+.||...|++++|...+++.+.....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDN--------PEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTS--------HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHHHCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 67899999999999999886543 589999999999999999999999988765443
No 130
>PLN02789 farnesyltranstransferase
Probab=97.44 E-value=0.0045 Score=63.90 Aligned_cols=135 Identities=9% Similarity=-0.081 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCC
Q 011759 66 ADELMEKGTNALKES-DYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (478)
Q Consensus 66 A~~L~~~G~~~~~~g-dy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~ 144 (478)
......+|..+...+ +|.+|++++.++++. +|.+..++++.|.++..+++
T Consensus 71 ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqaW~~R~~~l~~l~~--------------------- 121 (320)
T PLN02789 71 YTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQIWHHRRWLAEKLGP--------------------- 121 (320)
T ss_pred HHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHHhHHHHHHHHHcCc---------------------
Confidence 446667888888888 689999999999998 89999999999988865411
Q ss_pred CccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011759 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 224 (478)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek 224 (478)
..+..+.++++.++.+
T Consensus 122 -------------------------------------------------------------~~~~~el~~~~kal~~--- 137 (320)
T PLN02789 122 -------------------------------------------------------------DAANKELEFTRKILSL--- 137 (320)
T ss_pred -------------------------------------------------------------hhhHHHHHHHHHHHHh---
Confidence 0112233444444332
Q ss_pred hcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcC---CCc----hHHHHH
Q 011759 225 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIG---SKP----QEAIPY 297 (478)
Q Consensus 225 ~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~---~~~----eeAl~~ 297 (478)
.++-..+|...|-+....++|++|+.+|.++|++-... ..+++++|.++... +++ ++++.+
T Consensus 138 ----dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N--------~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 138 ----DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN--------NSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred ----CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc--------hhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 45567799999999999999999999999999986544 48999999998766 333 467888
Q ss_pred HHHHHHHH
Q 011759 298 CQKAISVC 305 (478)
Q Consensus 298 ~ekAL~I~ 305 (478)
+.++|.+.
T Consensus 206 ~~~aI~~~ 213 (320)
T PLN02789 206 TIDAILAN 213 (320)
T ss_pred HHHHHHhC
Confidence 88887654
No 131
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.43 E-value=0.0032 Score=56.13 Aligned_cols=50 Identities=22% Similarity=0.086 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011759 67 DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (478)
Q Consensus 67 ~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (478)
..+++.|..+...|+.++|+.+|.+|++. |-..+.-..+++.+|.+|..+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~L 51 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNL 51 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHc
Confidence 35788999999999999999999999883 655667778999999999876
No 132
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.42 E-value=0.00068 Score=60.40 Aligned_cols=66 Identities=17% Similarity=0.107 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 011759 234 DILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 234 d~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I 304 (478)
.+++.+|.++-..|+.++|+..|+++|.. |........++.+||.+|...|++++|+..+++++.-
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 47888999999999999999999999883 3344555689999999999999999999999888754
No 133
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.39 E-value=0.00097 Score=66.85 Aligned_cols=93 Identities=15% Similarity=0.101 Sum_probs=79.0
Q ss_pred hHHHHHHHH-----HHHHHHHHHhcC---CCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q 011759 207 DLDLAWKML-----DVARAIAEKHWG---DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELN 278 (478)
Q Consensus 207 dle~AwE~L-----e~Ar~I~ek~l~---~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~ 278 (478)
.|+.|+..| ..|..-|..++. .....+++|+-||+.++.+|+|+.|...|..+.+ --|.|+...+++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k-----~~P~s~KApdal 218 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK-----DYPKSPKAPDAL 218 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHH-----hCCCCCCChHHH
Confidence 788888876 567777776654 3467899999999999999999999999998877 225788888999
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHH
Q 011759 279 FRICLCLEIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 279 ~~LG~ay~~~~~~eeAl~~~ekAL~I 304 (478)
++||+|+..+++.++|...|++.+.=
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 99999999999999999999887653
No 134
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.36 E-value=0.0049 Score=56.21 Aligned_cols=144 Identities=18% Similarity=0.185 Sum_probs=96.1
Q ss_pred CCCCCCCccCCchh-hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhcc
Q 011759 47 NCETSGAIADGERE-KTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEE 125 (478)
Q Consensus 47 ~~~~~~~~~~~~~~-~~l~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~e 125 (478)
...++-.-.|++++ .-++....|--+|..+-..|+.+.|++.|.+|+.+ .|+.+.+|++-+.+|.-.++.
T Consensus 23 ~~~aE~~lede~~~~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l--------~P~raSayNNRAQa~RLq~~~- 93 (175)
T KOG4555|consen 23 LIPAESDLKDEEPDTQAIKASRELELKAIALAEAGDLDGALELFGQALCL--------APERASAYNNRAQALRLQGDD- 93 (175)
T ss_pred ccchhhhhcccCCchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh--------cccchHhhccHHHHHHHcCCh-
Confidence 44444433444333 35667778888899999999999999999999999 699999999999988643100
Q ss_pred CCccCCCCCCcCCCCCCCCCccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCc
Q 011759 126 ADPLVSVPKKEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDE 205 (478)
Q Consensus 126 sdvLg~~~~~~~e~~~~~~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ 205 (478)
++..
T Consensus 94 ----------------------------------------------------------------------------e~AL 97 (175)
T KOG4555|consen 94 ----------------------------------------------------------------------------EEAL 97 (175)
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 0123
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh----cCCCChHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERM----VEPDSRHIAELNFRI 281 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~l----lg~d~r~iAea~~~L 281 (478)
+||..|++ +-. +...-...+|.--|.+|.-+|+-+.|..+|+.|-++--++ +-.=+|.-|.+.-.|
T Consensus 98 dDLn~Ale-------Lag---~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr~QLV~lNPYAAlCN~ML 167 (175)
T KOG4555|consen 98 DDLNKALE-------LAG---DQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAREQLVELNPYAALCNQML 167 (175)
T ss_pred HHHHHHHH-------hcC---ccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHHHHHHhcChHHHHHHHHH
Confidence 45555543 221 1122235688889999999999999999999998774332 111234444444444
Q ss_pred HHHH
Q 011759 282 CLCL 285 (478)
Q Consensus 282 G~ay 285 (478)
+.++
T Consensus 168 a~~f 171 (175)
T KOG4555|consen 168 ADAF 171 (175)
T ss_pred HHHH
Confidence 4444
No 135
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.34 E-value=0.004 Score=65.81 Aligned_cols=135 Identities=17% Similarity=0.108 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCC
Q 011759 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQG 142 (478)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~ 142 (478)
...+...+..|-..+..|||..|...+.++.+. .|.-...|...|.+++..
T Consensus 81 ~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~--------~~~~~~~~llaA~aa~~~--------------------- 131 (409)
T TIGR00540 81 RRKAQKQTEEALLKLAEGDYAKAEKLIAKNADH--------AAEPVLNLIKAAEAAQQR--------------------- 131 (409)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHC---------------------
Confidence 346888899999999999999999999887775 354455666777777654
Q ss_pred CCCccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011759 143 SDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 222 (478)
Q Consensus 143 ~~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ 222 (478)
++++.|.+.|..+...
T Consensus 132 ---------------------------------------------------------------g~~~~A~~~l~~a~~~- 147 (409)
T TIGR00540 132 ---------------------------------------------------------------GDEARANQHLEEAAEL- 147 (409)
T ss_pred ---------------------------------------------------------------CCHHHHHHHHHHHHHh-
Confidence 3455566666655422
Q ss_pred HHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 011759 223 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 302 (478)
Q Consensus 223 ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL 302 (478)
..+.. ..+...++.+++..|+|++|+..+++.++.. |+|+ .+++-++.+|...+++++|+.++++.+
T Consensus 148 --~p~~~---l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-----P~~~---~~l~ll~~~~~~~~d~~~a~~~l~~l~ 214 (409)
T TIGR00540 148 --AGNDN---ILVEIARTRILLAQNELHAARHGVDKLLEMA-----PRHK---EVLKLAEEAYIRSGAWQALDDIIDNMA 214 (409)
T ss_pred --CCcCc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCH---HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 11111 1234445788888888888888777666554 3443 567778888888888888887777766
Q ss_pred H
Q 011759 303 S 303 (478)
Q Consensus 303 ~ 303 (478)
+
T Consensus 215 k 215 (409)
T TIGR00540 215 K 215 (409)
T ss_pred H
Confidence 4
No 136
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.34 E-value=0.02 Score=56.69 Aligned_cols=52 Identities=10% Similarity=0.078 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011759 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (478)
Q Consensus 65 ~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (478)
.+..+...|..++..|+|++|++.|.+.+.. | +..+....+.+++|.+++..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~----y-P~s~~a~~a~l~la~ayy~~ 82 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR----Y-PFGPYSQQVQLDLIYAYYKN 82 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----C-CCChHHHHHHHHHHHHHHhc
Confidence 4677889999999999999999999999885 2 23466667889999999975
No 137
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.33 E-value=0.00043 Score=48.23 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 011759 235 ILSALAEVALEREDIETSLSDYQKALTILERMV 267 (478)
Q Consensus 235 ~~~~LGev~le~g~feeAl~dy~kAL~I~~~ll 267 (478)
+|.+||.+|...|+|++|+.+|+++|.|.....
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~ 33 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPE 33 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 588999999999999999999999999887653
No 138
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.33 E-value=0.023 Score=59.11 Aligned_cols=143 Identities=15% Similarity=0.153 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCC
Q 011759 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGS 143 (478)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~ 143 (478)
..+...+.+|+.+++.|+|.+|+..|-.|++. .|.+-.+||.-|.+||..|+...++
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al--------------- 92 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAAL--------------- 92 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccch---------------
Confidence 45777889999999999999999999999997 8999999999999999875442211
Q ss_pred CCccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011759 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 223 (478)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~e 223 (478)
-|| -|+|
T Consensus 93 --------------------------------------------------------------~Dl---------~rVl-- 99 (504)
T KOG0624|consen 93 --------------------------------------------------------------QDL---------SRVL-- 99 (504)
T ss_pred --------------------------------------------------------------hhH---------HHHH--
Confidence 112 2222
Q ss_pred HhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc---CCCC-hHHHHHHH---HHHHHHHcCCCchHHHH
Q 011759 224 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMV---EPDS-RHIAELNF---RICLCLEIGSKPQEAIP 296 (478)
Q Consensus 224 k~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~ll---g~d~-r~iAea~~---~LG~ay~~~~~~eeAl~ 296 (478)
...|+..-+..--|.|++.+|.+++|..+|...|.--...- ...+ ..+++-|. ..-..+.-.|++..||+
T Consensus 100 ---elKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~ 176 (504)
T KOG0624|consen 100 ---ELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIE 176 (504)
T ss_pred ---hcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHH
Confidence 22456677777889999999999999999998876432110 0000 01111122 22234455778899999
Q ss_pred HHHHHHHHH
Q 011759 297 YCQKAISVC 305 (478)
Q Consensus 297 ~~ekAL~I~ 305 (478)
+..+-|+|+
T Consensus 177 ~i~~llEi~ 185 (504)
T KOG0624|consen 177 MITHLLEIQ 185 (504)
T ss_pred HHHHHHhcC
Confidence 988888875
No 139
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.0023 Score=63.81 Aligned_cols=75 Identities=19% Similarity=0.168 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHH
Q 011759 233 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRL 312 (478)
Q Consensus 233 Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~rl~~l 312 (478)
.++|.-|+++|+..|+|++|+-+|++++=|++.. +--|.++|+++|-+|. ..++.-|.+||.+||++...++..|
T Consensus 154 ~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n-~l~f~rlae~~Yt~gg----~eN~~~arkyy~~alkl~~~~~ral 228 (289)
T KOG3060|consen 154 QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFN-PLYFQRLAEVLYTQGG----AENLELARKYYERALKLNPKNLRAL 228 (289)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHhChHhHHHH
Confidence 6799999999999999999999999999887632 2336778888888887 4567889999999999998766554
No 140
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0064 Score=60.58 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 011759 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVS 98 (478)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~ 98 (478)
.+.-...|.+.|+++|..|+|.+|..+|.+|+-.+..
T Consensus 174 Kmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~ 210 (329)
T KOG0545|consen 174 KMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRN 210 (329)
T ss_pred hhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHH
Confidence 3445667889999999999999999999999987644
No 141
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.27 E-value=0.0011 Score=70.89 Aligned_cols=54 Identities=20% Similarity=0.313 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHH---HHHHHHHHHHHhhhhcc
Q 011759 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECV---NAYYQYGRALLYKAQEE 125 (478)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A---~~y~~YG~ALl~~a~~e 125 (478)
..+..++++|..++.+|+|++|+.+|++|+++ .|..+ .+||++|++|..+++.+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--------~Pd~aeA~~A~yNLAcaya~LGr~d 129 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--------NPNPDEAQAAYYNKACCHAYREEGK 129 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCchHHHHHHHHHHHHHHHcCCHH
Confidence 45889999999999999999999999999999 56665 45999999999986553
No 142
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.27 E-value=0.00034 Score=47.43 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 011759 233 VDILSALAEVALEREDIETSLSDYQKALTILER 265 (478)
Q Consensus 233 Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~ 265 (478)
|.+|.++|.++..+++|++|+.+|++||+|.+.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 578999999999999999999999999998653
No 143
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.003 Score=64.14 Aligned_cols=108 Identities=21% Similarity=0.220 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCC
Q 011759 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (478)
Q Consensus 66 A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~ 145 (478)
+....-+|..++.+++|..|...|.+|.+| .|++.+++..||.+|++.+-.
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a~~--------------------- 206 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQAGQ--------------------- 206 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCC---------------------
Confidence 667788999999999999999999999999 799999999999999986200
Q ss_pred ccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011759 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (478)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~ 225 (478)
.+-.. ++.+|.+.
T Consensus 207 ------------------------------------------------------------~~ta~-------a~~ll~~a 219 (287)
T COG4235 207 ------------------------------------------------------------QMTAK-------ARALLRQA 219 (287)
T ss_pred ------------------------------------------------------------cccHH-------HHHHHHHH
Confidence 01112 33344444
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q 011759 226 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRH 273 (478)
Q Consensus 226 l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~ 273 (478)
+...+.-..+.+.||-.+++.|+|.+|+..++.-|+. ++++.+.
T Consensus 220 l~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~----lp~~~~r 263 (287)
T COG4235 220 LALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL----LPADDPR 263 (287)
T ss_pred HhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc----CCCCCch
Confidence 4434566889999999999999999999999877654 4555544
No 144
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.24 E-value=0.0009 Score=63.60 Aligned_cols=89 Identities=21% Similarity=0.242 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 011759 214 MLDVARAIAEKHWGDSMEKVDILSALAEVALEREDI----------ETSLSDYQKALTILERMVEPDSRHIAELNFRICL 283 (478)
Q Consensus 214 ~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~f----------eeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ 283 (478)
+|+.||..++......|.-++.+++-|.+++++.+| ++|+.-|++||.|.... .+++++||.
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~--------hdAlw~lGn 77 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK--------HDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT---------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch--------HHHHHHHHH
Confidence 456666666665443455688888888888888665 45666666666665544 489999999
Q ss_pred HHHcCC----CchHHHHHHHHHHHHHHHHHH
Q 011759 284 CLEIGS----KPQEAIPYCQKAISVCKSRVQ 310 (478)
Q Consensus 284 ay~~~~----~~eeAl~~~ekAL~I~k~rl~ 310 (478)
||..++ +..+|..+|++|...+++-..
T Consensus 78 A~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~ 108 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYFEKATEYFQKAVD 108 (186)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHHHHh
Confidence 998665 456788888888888776644
No 145
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.23 E-value=0.00053 Score=46.04 Aligned_cols=31 Identities=26% Similarity=0.221 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 011759 275 AELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (478)
Q Consensus 275 Aea~~~LG~ay~~~~~~eeAl~~~ekAL~I~ 305 (478)
|++|+.||.+|...++|++|+.+|++++.+.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 6789999999999999999999999999874
No 146
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.22 E-value=0.002 Score=49.64 Aligned_cols=50 Identities=18% Similarity=0.231 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011759 215 LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 264 (478)
Q Consensus 215 Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~ 264 (478)
++.|+.+|++.+...+...+++..||.++..+|+|++|+..|++++++..
T Consensus 13 ~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 13 YDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 35566677777676788999999999999999999999999999997753
No 147
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.15 E-value=0.0027 Score=57.83 Aligned_cols=90 Identities=20% Similarity=0.203 Sum_probs=77.3
Q ss_pred CcChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 011759 204 DESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICL 283 (478)
Q Consensus 204 d~ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ 283 (478)
+.++|+.|+|.|..|+.+ -++.+.+|+|-+..+.-+++-++|+.++.+||++. |+..|.-..+|.+.|+
T Consensus 55 E~g~Ld~AlE~F~qal~l-------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCL-------APERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQTRTACQAFVQRGL 123 (175)
T ss_pred hccchHHHHHHHHHHHHh-------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----CccchHHHHHHHHHHH
Confidence 346777777777777655 35678999999999999999999999999999865 5667888899999999
Q ss_pred HHHcCCCchHHHHHHHHHHHH
Q 011759 284 CLEIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 284 ay~~~~~~eeAl~~~ekAL~I 304 (478)
.|..+|+-+.|..-|+.|-.+
T Consensus 124 lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHHHhCchHHHHHhHHHHHHh
Confidence 999999999999999998764
No 148
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0054 Score=64.82 Aligned_cols=173 Identities=19% Similarity=0.135 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCC-ccCCCCCCcCCCCCCCC
Q 011759 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEAD-PLVSVPKKEGDSQQGSD 144 (478)
Q Consensus 66 A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esd-vLg~~~~~~~e~~~~~~ 144 (478)
..-|..+|+.++..|||.+|+..|+++.-+ .|.+-...-.||..|-..++.+.. .|+...-
T Consensus 232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf---------- 293 (564)
T KOG1174|consen 232 EHLMMALGKCLYYNGDYFQAEDIFSSTLCA--------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLF---------- 293 (564)
T ss_pred HHHHHHHhhhhhhhcCchHHHHHHHHHhhC--------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHH----------
Confidence 667889999999999999999999999998 899999999999999888766442 2221000
Q ss_pred CccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011759 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 224 (478)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek 224 (478)
+...-++. -|-...+ --=+.-+|..| +..-+|
T Consensus 294 ---------~~~~~ta~-------~wfV~~~-------------------------~l~~~K~~~rA-------L~~~eK 325 (564)
T KOG1174|consen 294 ---------AKVKYTAS-------HWFVHAQ-------------------------LLYDEKKFERA-------LNFVEK 325 (564)
T ss_pred ---------hhhhcchh-------hhhhhhh-------------------------hhhhhhhHHHH-------HHHHHH
Confidence 00000000 0000000 00011234444 444444
Q ss_pred hcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 011759 225 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 225 ~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I 304 (478)
.....++....|..-|.+.+..++.++|+-.|+.|..++.--+ ++|-.|=-+|...+++.+|.-.-..++..
T Consensus 326 ~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL--------~~Y~GL~hsYLA~~~~kEA~~~An~~~~~ 397 (564)
T KOG1174|consen 326 CIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRL--------EIYRGLFHSYLAQKRFKEANALANWTIRL 397 (564)
T ss_pred HhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhH--------HHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 4444556778999999999999999999999999999886544 78888888888888888888777777766
Q ss_pred HHHHHHHH
Q 011759 305 CKSRVQRL 312 (478)
Q Consensus 305 ~k~rl~~l 312 (478)
+....+.|
T Consensus 398 ~~~sA~~L 405 (564)
T KOG1174|consen 398 FQNSARSL 405 (564)
T ss_pred hhcchhhh
Confidence 66544443
No 149
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.10 E-value=0.0048 Score=64.34 Aligned_cols=99 Identities=17% Similarity=0.178 Sum_probs=80.0
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC--ChHHHHHHHHHH
Q 011759 205 ESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPD--SRHIAELNFRIC 282 (478)
Q Consensus 205 ~ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d--~r~iAea~~~LG 282 (478)
.+-|+.+++.|+.|..+--...+ .+--.+++..||.++-...+|++|+-+..+|++|-..+--.+ .-.-+.++|.|+
T Consensus 135 ls~fq~~Lesfe~A~~~A~~~~D-~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhma 213 (518)
T KOG1941|consen 135 LSVFQKALESFEKALRYAHNNDD-AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMA 213 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhccCC-ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHH
Confidence 36788899998888887655533 333457999999999999999999999999999999875333 334578899999
Q ss_pred HHHHcCCCchHHHHHHHHHHHH
Q 011759 283 LCLEIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 283 ~ay~~~~~~eeAl~~~ekAL~I 304 (478)
++|.++|+.-+|.++++.|..+
T Consensus 214 ValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 214 VALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred HHHHHhcccccHHHHHHHHHHH
Confidence 9999999998888888877665
No 150
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.07 E-value=0.0032 Score=70.21 Aligned_cols=53 Identities=23% Similarity=0.377 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhh
Q 011759 62 TVEFADELMEKGTNA-----LKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKA 122 (478)
Q Consensus 62 ~l~~A~~L~~~G~~~-----~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a 122 (478)
..+..+.-+.++.++ +..++|.++..+|+++++| +|---..||.||.+.+++.
T Consensus 476 awElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~--------nplq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 476 AWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEI--------NPLQLGTWFGLGCAALQLE 533 (777)
T ss_pred HHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhc--------CccchhHHHhccHHHHHHh
Confidence 344444444454454 4569999999999999998 6777789999999999873
No 151
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.04 E-value=0.0011 Score=46.17 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=26.4
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 011759 277 LNFRICLCLEIGSKPQEAIPYCQKAISVCK 306 (478)
Q Consensus 277 a~~~LG~ay~~~~~~eeAl~~~ekAL~I~k 306 (478)
+|.+||.+|...|+|++|+.+|+++|.+.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 588999999999999999999999997644
No 152
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.04 E-value=0.0045 Score=60.12 Aligned_cols=79 Identities=25% Similarity=0.177 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHH
Q 011759 232 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQR 311 (478)
Q Consensus 232 ~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~rl~~ 311 (478)
.++.+-.=|.-++..|+|+.|..-|..||+++..... ..-+.+|.|.|.|+..+++++.||.-|.+||++-......
T Consensus 94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~---e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kA 170 (271)
T KOG4234|consen 94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST---EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKA 170 (271)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH---HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHH
Confidence 4555666788889999999999999999999988764 2335678889999999999999999999999887644444
Q ss_pred HH
Q 011759 312 LL 313 (478)
Q Consensus 312 l~ 313 (478)
|.
T Consensus 171 l~ 172 (271)
T KOG4234|consen 171 LE 172 (271)
T ss_pred HH
Confidence 43
No 153
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.97 E-value=0.0016 Score=43.65 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011759 233 VDILSALAEVALEREDIETSLSDYQKALTILE 264 (478)
Q Consensus 233 Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~ 264 (478)
|.+|..||.+++.+|+|++|+.+|+++|.|.+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 56899999999999999999999999999864
No 154
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.96 E-value=0.0092 Score=69.08 Aligned_cols=134 Identities=13% Similarity=0.027 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCCc
Q 011759 67 DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKD 146 (478)
Q Consensus 67 ~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~d 146 (478)
..|+.+|..|-.+|++++|...|.++|++ .|+++.++++||-.|-..
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae~------------------------- 163 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEEE------------------------- 163 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHh-------------------------
Confidence 47899999999999999999999999998 599999999999877543
Q ss_pred cccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHH---
Q 011759 147 DSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE--- 223 (478)
Q Consensus 147 e~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~e--- 223 (478)
+|+.|.+|+..|...|-
T Consensus 164 ------------------------------------------------------------dL~KA~~m~~KAV~~~i~~k 183 (906)
T PRK14720 164 ------------------------------------------------------------DKEKAITYLKKAIYRFIKKK 183 (906)
T ss_pred ------------------------------------------------------------hHHHHHHHHHHHHHHHHhhh
Confidence 34444444433332221
Q ss_pred ----------------------------HhcCC--CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q 011759 224 ----------------------------KHWGD--SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRH 273 (478)
Q Consensus 224 ----------------------------k~l~~--~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~ 273 (478)
+..+. .-+.++.+.-|=+.|.+.++|++++..|+..|++..+..
T Consensus 184 q~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~------ 257 (906)
T PRK14720 184 QYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNN------ 257 (906)
T ss_pred cchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcch------
Confidence 11110 123566777777999999999999999999999988754
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 011759 274 IAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 274 iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I 304 (478)
.+.+.|..||. ++|.. ..+|+..|.+
T Consensus 258 --~a~~~l~~~y~--~kY~~-~~~~ee~l~~ 283 (906)
T PRK14720 258 --KAREELIRFYK--EKYKD-HSLLEDYLKM 283 (906)
T ss_pred --hhHHHHHHHHH--HHccC-cchHHHHHHH
Confidence 45777777776 55543 4555555543
No 155
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.94 E-value=0.0014 Score=44.20 Aligned_cols=32 Identities=25% Similarity=0.295 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 011759 275 AELNFRICLCLEIGSKPQEAIPYCQKAISVCK 306 (478)
Q Consensus 275 Aea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k 306 (478)
|++|+.||.+|...|++++|+.+|++++++.+
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 57899999999999999999999999998754
No 156
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.93 E-value=0.0016 Score=43.90 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011759 233 VDILSALAEVALEREDIETSLSDYQKALTILE 264 (478)
Q Consensus 233 Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~ 264 (478)
|.+|..||.++..+|+|++|+.+|++|++|.+
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 57899999999999999999999999999875
No 157
>PRK15331 chaperone protein SicA; Provisional
Probab=96.92 E-value=0.003 Score=59.27 Aligned_cols=89 Identities=17% Similarity=0.090 Sum_probs=67.1
Q ss_pred hHHHHHHHH-----HHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 011759 207 DLDLAWKML-----DVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRI 281 (478)
Q Consensus 207 dle~AwE~L-----e~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~L 281 (478)
-+..|+..| +-|..+|.-..-..+.-.+-+..||.+++..++|++|+..|--|..+...-. ..+|.+
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp--------~p~f~a 111 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY--------RPVFFT 111 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC--------CccchH
Confidence 344555444 4455555433222223356789999999999999999999999988875433 348999
Q ss_pred HHHHHcCCCchHHHHHHHHHHH
Q 011759 282 CLCLEIGSKPQEAIPYCQKAIS 303 (478)
Q Consensus 282 G~ay~~~~~~eeAl~~~ekAL~ 303 (478)
|.||..+++...|+.+|+.++.
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 9999999999999999999987
No 158
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.87 E-value=0.032 Score=58.43 Aligned_cols=155 Identities=21% Similarity=0.214 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh-CCCCh-hHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCC
Q 011759 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHY-GELAL-ECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGS 143 (478)
Q Consensus 66 A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~-Ge~~p-e~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~ 143 (478)
...++.+|..+-..+||++|+-+..+|++|....- |+.|. .-+.++|.+..+|..+|+
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~-------------------- 221 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGR-------------------- 221 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcc--------------------
Confidence 44566777777777788888777777777754433 44433 345566666666655422
Q ss_pred CCccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011759 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 223 (478)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~e 223 (478)
|..|.+..+.|-.|-.
T Consensus 222 ----------------------------------------------------------------LgdA~e~C~Ea~klal 237 (518)
T KOG1941|consen 222 ----------------------------------------------------------------LGDAMECCEEAMKLAL 237 (518)
T ss_pred ----------------------------------------------------------------cccHHHHHHHHHHHHH
Confidence 2224455555555554
Q ss_pred HhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchH-----HHHHH
Q 011759 224 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQE-----AIPYC 298 (478)
Q Consensus 224 k~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~ee-----Al~~~ 298 (478)
.+ ++..-.+.|...+|+||.+.|+.+.|..-|+.|..+...+-. ----.+++...+.|+.-..-..+ |++.-
T Consensus 238 ~~-Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gd--rmgqv~al~g~Akc~~~~r~~~k~~~Crale~n 314 (518)
T KOG1941|consen 238 QH-GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGD--RMGQVEALDGAAKCLETLRLQNKICNCRALEFN 314 (518)
T ss_pred Hh-CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 44 345567899999999999999999999999999999987642 11123445555566655554444 89998
Q ss_pred HHHHHHHHH
Q 011759 299 QKAISVCKS 307 (478)
Q Consensus 299 ekAL~I~k~ 307 (478)
.++|+|-..
T Consensus 315 ~r~levA~~ 323 (518)
T KOG1941|consen 315 TRLLEVASS 323 (518)
T ss_pred HHHHHHHHH
Confidence 898888543
No 159
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.86 E-value=0.022 Score=64.93 Aligned_cols=128 Identities=19% Similarity=0.175 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCC
Q 011759 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGS 143 (478)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~ 143 (478)
+...-|+..+..+...|+|.+|+.+|..++..- --.|+.+|+.+|+||..++
T Consensus 412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~-------~~~~~~vw~~~a~c~~~l~--------------------- 463 (895)
T KOG2076|consen 412 DDVDLYLDLADALTNIGKYKEALRLLSPITNRE-------GYQNAFVWYKLARCYMELG--------------------- 463 (895)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc-------cccchhhhHHHHHHHHHHh---------------------
Confidence 356778888899999999999999999887641 2345789999999998761
Q ss_pred CCccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011759 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 223 (478)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~e 223 (478)
.+ +.|.+.|+
T Consensus 464 ---------------------------------------------------------------e~-------e~A~e~y~ 473 (895)
T KOG2076|consen 464 ---------------------------------------------------------------EY-------EEAIEFYE 473 (895)
T ss_pred ---------------------------------------------------------------hH-------HHHHHHHH
Confidence 12 44556666
Q ss_pred HhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC--------ChHHHHHHHHHHHHHHcCCCchHHH
Q 011759 224 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPD--------SRHIAELNFRICLCLEIGSKPQEAI 295 (478)
Q Consensus 224 k~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d--------~r~iAea~~~LG~ay~~~~~~eeAl 295 (478)
+.+...+...++...|+.++..+|++++|+ ++...++.++ ....+.+.++.+..|...|+.++=+
T Consensus 474 kvl~~~p~~~D~Ri~Lasl~~~~g~~Ekal-------EtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 474 KVLILAPDNLDARITLASLYQQLGNHEKAL-------ETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHhcCCCchhhhhhHHHHHHhcCCHHHHH-------HHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 666656788899999999999999999555 4445544444 3456677799999999999988743
Q ss_pred H
Q 011759 296 P 296 (478)
Q Consensus 296 ~ 296 (478)
.
T Consensus 547 ~ 547 (895)
T KOG2076|consen 547 N 547 (895)
T ss_pred H
Confidence 3
No 160
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.82 E-value=0.0052 Score=47.50 Aligned_cols=41 Identities=29% Similarity=0.338 Sum_probs=36.4
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhc
Q 011759 76 ALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQE 124 (478)
Q Consensus 76 ~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~ 124 (478)
++..|+|++|+.+|.+++.. +|.+.++++.||.+|+..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~ 41 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQY 41 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-H
T ss_pred ChhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCH
Confidence 46789999999999999998 899999999999999987433
No 161
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.81 E-value=0.0028 Score=45.90 Aligned_cols=42 Identities=14% Similarity=0.134 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 011759 67 DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGR 116 (478)
Q Consensus 67 ~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ 116 (478)
..++.+|..+..+|++++|+.+|++++++ +|+...+++.||.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 35788999999999999999999999998 8999999999986
No 162
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.80 E-value=0.018 Score=61.24 Aligned_cols=63 Identities=17% Similarity=0.195 Sum_probs=56.4
Q ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHH
Q 011759 229 SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQ 299 (478)
Q Consensus 229 ~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~e 299 (478)
.+.-+..+...+..++..++|+.|+...++|..+....+ .+|+.|+.||...|+|+.|+-...
T Consensus 230 ~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f--------~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 230 NPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEF--------ETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhH--------HHHHHHHHHHHhcCCHHHHHHHHh
Confidence 344588999999999999999999999999999988776 899999999999999999986554
No 163
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.74 E-value=0.039 Score=55.52 Aligned_cols=141 Identities=26% Similarity=0.237 Sum_probs=93.2
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCCccccccccCC
Q 011759 76 ALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKNAVNG 155 (478)
Q Consensus 76 ~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~de~~~~~~~~ 155 (478)
+..+||++.|.-+|+++=.+....-.+...+++..+|++|+.++...
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~--------------------------------- 49 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKK--------------------------------- 49 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcC---------------------------------
Confidence 46899999999999999998764445567899999999999999751
Q ss_pred CCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHH-h--cCCC---
Q 011759 156 ESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK-H--WGDS--- 229 (478)
Q Consensus 156 e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek-~--l~~~--- 229 (478)
+++..|...|++|..|+++ . ...+
T Consensus 50 --------------------------------------------------~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~ 79 (278)
T PF08631_consen 50 --------------------------------------------------DKYEEAVKWLQRAYDILEKPGKMDKLSPDG 79 (278)
T ss_pred --------------------------------------------------CChHHHHHHHHHHHHHHHhhhhccccCCcH
Confidence 2456677777777777755 2 1111
Q ss_pred -chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 011759 230 -MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 230 -~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I 304 (478)
.-...++..|+.+|++.+.++.... ..++|++...-+| +++.+- +.+|-.+.. .++.+.+.+.+.+.+.-
T Consensus 80 ~elr~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~~~--~L~l~il~~-~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 80 SELRLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPEVF--LLKLEILLK-SFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcHHH--HHHHHHHhc-cCChhHHHHHHHHHHHh
Confidence 2357899999999999999864333 3344444444444 343322 233333333 55666665555555543
No 164
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.73 E-value=0.021 Score=51.28 Aligned_cols=107 Identities=13% Similarity=0.085 Sum_probs=77.2
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCC-Cch----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc---CCCChHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGD-SME----KVDILSALAEVALEREDIETSLSDYQKALTILERMV---EPDSRHIAEL 277 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~-~~~----~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~ll---g~d~r~iAea 277 (478)
+-|+.|-..+..|..+-...+.. ..+ -|-||-.|...+..+|+|++++..-.++|..+..-- ..+-..-.-+
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaa 102 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAA 102 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHH
Confidence 56777777777777766555432 111 377999999999999999999999999999887642 2223444556
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHH
Q 011759 278 NFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRL 312 (478)
Q Consensus 278 ~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~rl~~l 312 (478)
-|+.+.++.-.|+.++|+..|+++-+++..|-+.+
T Consensus 103 Vfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE~ 137 (144)
T PF12968_consen 103 VFSRAVALEGLGRKEEALKEFRMAGEMIAERKGEM 137 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S--
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCC
Confidence 78999999999999999999999999988775543
No 165
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.70 E-value=0.0094 Score=53.38 Aligned_cols=97 Identities=24% Similarity=0.198 Sum_probs=73.2
Q ss_pred ChHHHHHHHHHHHHHHHHHhcC-C--------------CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 011759 206 SDLDLAWKMLDVARAIAEKHWG-D--------------SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPD 270 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~-~--------------~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d 270 (478)
++...+.+.|+.|+.+|.-..- . ......++..|+..+...|+|++|+..+++++.+.+-.
T Consensus 20 ~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~---- 95 (146)
T PF03704_consen 20 GDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYD---- 95 (146)
T ss_dssp T-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-----
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC----
Confidence 4667778888888888854321 1 12357899999999999999999999999999886543
Q ss_pred ChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHH
Q 011759 271 SRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQ 310 (478)
Q Consensus 271 ~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~rl~ 310 (478)
-.+|..|-.+|...|++.+|+.+|++....+...++
T Consensus 96 ----E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg 131 (146)
T PF03704_consen 96 ----EEAYRLLMRALAAQGRRAEALRVYERYRRRLREELG 131 (146)
T ss_dssp ----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS
T ss_pred ----HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhC
Confidence 378899999999999999999999998877665544
No 166
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.63 E-value=0.063 Score=46.48 Aligned_cols=173 Identities=24% Similarity=0.160 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc--cCCCCCCcCCCCCCC
Q 011759 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQGS 143 (478)
Q Consensus 66 A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdv--Lg~~~~~~~e~~~~~ 143 (478)
...+...+..+...+++..+...+..++.. ...+.....|+.+|..+...+.....+ +......
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 124 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALAL-------- 124 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcC--------
Confidence 567778889999999999999999999986 336778888889888888775421110 0000000
Q ss_pred CCccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccc-cccCcChHHHHHHHHHHHHHHH
Q 011759 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAE-ADEDESDLDLAWKMLDVARAIA 222 (478)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e-~eEd~ddle~AwE~Le~Ar~I~ 222 (478)
. .. .. .. . .-... .....++++.|...+..+..+
T Consensus 125 -------------~------~~--------~~-~~----~------------~~~~~~~~~~~~~~~~a~~~~~~~~~~- 159 (291)
T COG0457 125 -------------D------PD--------PD-LA----E------------ALLALGALYELGDYEEALELYEKALEL- 159 (291)
T ss_pred -------------C------CC--------cc-hH----H------------HHHHHHHHHHcCCHHHHHHHHHHHHhc-
Confidence 0 00 00 00 0 00000 011235566666666655221
Q ss_pred HHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 011759 223 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 302 (478)
Q Consensus 223 ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL 302 (478)
.. ........+..++..+...+++..|+..|.+++.+.... ....++.++.+|...+++..|+.++.+++
T Consensus 160 ~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 229 (291)
T COG0457 160 DP---ELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-------DAEALLNLGLLYLKLGKYEEALEYYEKAL 229 (291)
T ss_pred CC---CccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-------chHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 00 013567788888888999999999999999999998874 35789999999999999999999999999
Q ss_pred HHHHH
Q 011759 303 SVCKS 307 (478)
Q Consensus 303 ~I~k~ 307 (478)
.....
T Consensus 230 ~~~~~ 234 (291)
T COG0457 230 ELDPD 234 (291)
T ss_pred hhCcc
Confidence 98764
No 167
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.54 E-value=0.028 Score=65.00 Aligned_cols=127 Identities=9% Similarity=-0.017 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCC
Q 011759 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (478)
Q Consensus 66 A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~ 145 (478)
...+..+|..+..+|+|++|+++|.+++++ .|....+|+.++.++...
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~--------dP~n~~~l~gLa~~y~~~------------------------ 149 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLKK--------DPTNPDLISGMIMTQADA------------------------ 149 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhhc------------------------
Confidence 455666788999999999999999999998 788888886443333221
Q ss_pred ccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011759 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (478)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~ 225 (478)
+..+.|++.++.+...
T Consensus 150 ------------------------------------------------------------~q~~eAl~~l~~l~~~---- 165 (822)
T PRK14574 150 ------------------------------------------------------------GRGGVVLKQATELAER---- 165 (822)
T ss_pred ------------------------------------------------------------CCHHHHHHHHHHhccc----
Confidence 2334455544444332
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 011759 226 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 300 (478)
Q Consensus 226 l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ek 300 (478)
.+. ...+..++.++...+++.+|+..|++++++.... .+.++.+-.++...|-...|+++.++
T Consensus 166 ---dp~-~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n--------~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 166 ---DPT-VQNYMTLSYLNRATDRNYDALQASSEAVRLAPTS--------EEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred ---Ccc-hHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 222 2334556666666888877999999999886543 36677777888888887777776664
No 168
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.032 Score=58.87 Aligned_cols=82 Identities=20% Similarity=0.262 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 011759 231 EKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDS-------RHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 303 (478)
Q Consensus 231 ~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~-------r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~ 303 (478)
..|...-.-|.+|+..|+|..|+..|++|+.+...-.+.+. -..--+|.||+.||..+.+|.+|+.+|.++|+
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 35777788899999999999999999999999986544331 11235799999999999999999999999998
Q ss_pred HHHHHHHHH
Q 011759 304 VCKSRVQRL 312 (478)
Q Consensus 304 I~k~rl~~l 312 (478)
+-......|
T Consensus 286 ~~~~N~KAL 294 (397)
T KOG0543|consen 286 LDPNNVKAL 294 (397)
T ss_pred cCCCchhHH
Confidence 765443333
No 169
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.46 E-value=0.036 Score=54.58 Aligned_cols=54 Identities=24% Similarity=0.116 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhc
Q 011759 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQE 124 (478)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~ 124 (478)
-++|.-++.+|..+-..|=+.-|.--|.++|.| .|.++++|+.+|.-|+.-+..
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~f 115 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNF 115 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccc
Confidence 357999999999999999999999999999999 699999999999888876544
No 170
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.43 E-value=0.12 Score=44.78 Aligned_cols=95 Identities=24% Similarity=0.155 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 011759 208 LDLAWKMLDVARAIAEKHWGDSMEKVDILSALAE-VALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 286 (478)
Q Consensus 208 le~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGe-v~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~ 286 (478)
+..++..+..+..++.+...........+..++. ++...++|+.|+..|.+++.+... ....+..++.++..+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 178 (291)
T COG0457 104 LLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPE-----LNELAEALLALGALLE 178 (291)
T ss_pred HHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----ccchHHHHHHhhhHHH
Confidence 3334444455666665554422222233444444 899999999999999999552221 2345677788888889
Q ss_pred cCCCchHHHHHHHHHHHHHHH
Q 011759 287 IGSKPQEAIPYCQKAISVCKS 307 (478)
Q Consensus 287 ~~~~~eeAl~~~ekAL~I~k~ 307 (478)
..++++.|+.++.+++.+...
T Consensus 179 ~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 179 ALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred HhcCHHHHHHHHHHHHhhCcc
Confidence 999999999999999998777
No 171
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.19 Score=55.38 Aligned_cols=81 Identities=17% Similarity=0.083 Sum_probs=65.1
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCC--------CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 011759 205 ESDLDLAWKMLDVARAIAEKHWGD--------SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAE 276 (478)
Q Consensus 205 ~ddle~AwE~Le~Ar~I~ek~l~~--------~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAe 276 (478)
.++|..|.+.|+.|+.|..+.+.. ..+++-|+.-|+-|++.+|+-.+|...|...+. ..+.|.+.+|-
T Consensus 188 ~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~----~~~~D~~~~Av 263 (652)
T KOG2376|consen 188 NGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIK----RNPADEPSLAV 263 (652)
T ss_pred cccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH----hcCCCchHHHH
Confidence 478999999999999998887652 246788999999999999999999999987654 34568888888
Q ss_pred HHHHHHHHHHcCC
Q 011759 277 LNFRICLCLEIGS 289 (478)
Q Consensus 277 a~~~LG~ay~~~~ 289 (478)
+-+||=.+-.+..
T Consensus 264 ~~NNLva~~~d~~ 276 (652)
T KOG2376|consen 264 AVNNLVALSKDQN 276 (652)
T ss_pred Hhcchhhhccccc
Confidence 8888865544443
No 172
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=96.35 E-value=0.17 Score=52.36 Aligned_cols=70 Identities=17% Similarity=0.157 Sum_probs=62.3
Q ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 011759 229 SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK 306 (478)
Q Consensus 229 ~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k 306 (478)
..++|..|.-|+.-++-..+++.|+..+++||.--++.. .+-..||.++...|+|..|++.+++.++--.
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cv--------RAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~ 245 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCV--------RASIILGRVELAKGDYQKAVEALERVLEQNP 245 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccce--------ehhhhhhHHHHhccchHHHHHHHHHHHHhCh
Confidence 577999999999999999999999999999998877664 6778899999999999999999999876433
No 173
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.34 E-value=0.0097 Score=66.47 Aligned_cols=85 Identities=18% Similarity=0.123 Sum_probs=71.3
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 285 (478)
.+|+.+...|+.+..|+ +-...+|+.+|-+.+..+++..|+.+|.+|+.+.... ++++.||+.+|
T Consensus 499 ~~fs~~~~hle~sl~~n-------plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~--------~eaWnNls~ay 563 (777)
T KOG1128|consen 499 KDFSEADKHLERSLEIN-------PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN--------AEAWNNLSTAY 563 (777)
T ss_pred hhHHHHHHHHHHHhhcC-------ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc--------hhhhhhhhHHH
Confidence 57888877777777663 4456799999999999999999999999999876544 59999999999
Q ss_pred HcCCCchHHHHHHHHHHHHH
Q 011759 286 EIGSKPQEAIPYCQKAISVC 305 (478)
Q Consensus 286 ~~~~~~eeAl~~~ekAL~I~ 305 (478)
...++..+|...+++|+..-
T Consensus 564 i~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 564 IRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHhhhHHHHHHHHHHhhcC
Confidence 99999888888888887654
No 174
>PRK15331 chaperone protein SicA; Provisional
Probab=96.31 E-value=0.052 Score=51.05 Aligned_cols=101 Identities=10% Similarity=0.028 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCC
Q 011759 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQ 141 (478)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~ 141 (478)
+-+....+...|..+|.+|+|++|..+|.-.|-+ .|-+.+.++.+|.++..+
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~-------------------- 84 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLK-------------------- 84 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHH--------------------
Confidence 3456788889999999999999999999988875 455666777777776654
Q ss_pred CCCCccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHH
Q 011759 142 GSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAI 221 (478)
Q Consensus 142 ~~~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I 221 (478)
..++.|...|.+|..+
T Consensus 85 ----------------------------------------------------------------k~y~~Ai~~Y~~A~~l 100 (165)
T PRK15331 85 ----------------------------------------------------------------KQFQKACDLYAVAFTL 100 (165)
T ss_pred ----------------------------------------------------------------HHHHHHHHHHHHHHHc
Confidence 3577888888888765
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011759 222 AEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALT 261 (478)
Q Consensus 222 ~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~ 261 (478)
-... .. .++.+|.+++.+++...|+.+|+.++.
T Consensus 101 ~~~d--p~-----p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 101 LKND--YR-----PVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred ccCC--CC-----ccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 4322 12 377889999999999999999998887
No 175
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.31 E-value=0.03 Score=51.41 Aligned_cols=56 Identities=13% Similarity=0.127 Sum_probs=49.4
Q ss_pred chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCC
Q 011759 230 MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSK 290 (478)
Q Consensus 230 ~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~ 290 (478)
...-.+...||.+|+..++|+.|+..|++-+++. |.|+.+.-++|.+|+++..+..
T Consensus 44 ~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh-----P~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 44 EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH-----PTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCCCCccHHHHHHHHHHHHHhh
Confidence 3455789999999999999999999999988875 5789999999999999998764
No 176
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.24 E-value=0.0068 Score=43.84 Aligned_cols=42 Identities=14% Similarity=-0.024 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 011759 234 DILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICL 283 (478)
Q Consensus 234 d~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ 283 (478)
.++..||.+|..+|++++|+..|+++|++.... ..+++.||.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~--------~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDD--------PEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC--------HHHHHHhhh
Confidence 478999999999999999999999999976543 367777664
No 177
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.22 E-value=0.038 Score=46.63 Aligned_cols=68 Identities=13% Similarity=0.109 Sum_probs=58.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Q 011759 241 EVALEREDIETSLSDYQKALTILERMVEPD-SRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSR 308 (478)
Q Consensus 241 ev~le~g~feeAl~dy~kAL~I~~~llg~d-~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~r 308 (478)
-..+..++|..|++.+.+.+++........ ......++.+++.++...|++++|+..++.||.+.+..
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999998876554 33577789999999999999999999999999986653
No 178
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.22 E-value=0.061 Score=59.15 Aligned_cols=139 Identities=19% Similarity=0.080 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCC
Q 011759 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (478)
Q Consensus 66 A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~ 145 (478)
.-.+.-++..+...|+|++|.++..+|++. .|-+.++|+.-|++|-+.
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~------------------------ 241 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILKHA------------------------ 241 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHC------------------------
Confidence 455666777888999999999999999997 799999999999999764
Q ss_pred ccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011759 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (478)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~ 225 (478)
+++..|.+.++.||.+
T Consensus 242 ------------------------------------------------------------G~~~~Aa~~~~~Ar~L---- 257 (517)
T PF12569_consen 242 ------------------------------------------------------------GDLKEAAEAMDEAREL---- 257 (517)
T ss_pred ------------------------------------------------------------CCHHHHHHHHHHHHhC----
Confidence 5788899999999854
Q ss_pred cCCCchHHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 011759 226 WGDSMEKVD--ILSALAEVALEREDIETSLSDYQKALTILERMVEPDS---RHIAELNFRICLCLEIGSKPQEAIPYCQK 300 (478)
Q Consensus 226 l~~~~~~Ad--~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~---r~iAea~~~LG~ay~~~~~~eeAl~~~ek 300 (478)
+.+| +-...+..+++.|++++|+.....- .+...-+..+ -+-..-....|.+|.+.|++..|+..|..
T Consensus 258 -----D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~F--tr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~ 330 (517)
T PF12569_consen 258 -----DLADRYINSKCAKYLLRAGRIEEAEKTASLF--TREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHA 330 (517)
T ss_pred -----ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhh--cCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3343 3346788889999999998665322 1111111111 12234445689999999999999999999
Q ss_pred HHHHHHH
Q 011759 301 AISVCKS 307 (478)
Q Consensus 301 AL~I~k~ 307 (478)
.+.++..
T Consensus 331 v~k~f~~ 337 (517)
T PF12569_consen 331 VLKHFDD 337 (517)
T ss_pred HHHHHHH
Confidence 9998864
No 179
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.18 Score=52.43 Aligned_cols=106 Identities=20% Similarity=0.171 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCC
Q 011759 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (478)
Q Consensus 65 ~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~ 144 (478)
.|..+-..|+-||+.++|-.|+++|++.|..- .+ .-.-+|.+|++-+-|.++++.+
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k---c~-D~dlnavLY~NRAAa~~~l~Ny-------------------- 135 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKK---CA-DPDLNAVLYTNRAAAQLYLGNY-------------------- 135 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc---CC-CccHHHHHHhhHHHHHHHHHHH--------------------
Confidence 68899999999999999999999999999863 22 3345788899988888877333
Q ss_pred CccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011759 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 224 (478)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek 224 (478)
--|+.=..+||.
T Consensus 136 ----------------------------------------------------------------Rs~l~Dcs~al~---- 147 (390)
T KOG0551|consen 136 ----------------------------------------------------------------RSALNDCSAALK---- 147 (390)
T ss_pred ----------------------------------------------------------------HHHHHHHHHHHh----
Confidence 222222222332
Q ss_pred hcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 011759 225 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILER 265 (478)
Q Consensus 225 ~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~ 265 (478)
..+..+.+|..=+.+++++++|..|+...+..|.|..+
T Consensus 148 ---~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 148 ---LKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred ---cCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 24667889999999999999999999999988887754
No 180
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=0.43 Score=47.94 Aligned_cols=94 Identities=22% Similarity=0.120 Sum_probs=67.1
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKV-DILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLC 284 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~A-d~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~a 284 (478)
+.|..+..+++.|..+|..... ++.| .++..-|. .++.-+.+.|+..|+++|.+.+.- ...+.--+.|-+++.+
T Consensus 85 ~klsEvvdl~eKAs~lY~E~Gs--pdtAAmaleKAak-~lenv~Pd~AlqlYqralavve~~--dr~~ma~el~gk~sr~ 159 (308)
T KOG1585|consen 85 SKLSEVVDLYEKASELYVECGS--PDTAAMALEKAAK-ALENVKPDDALQLYQRALAVVEED--DRDQMAFELYGKCSRV 159 (308)
T ss_pred HHhHHHHHHHHHHHHHHHHhCC--cchHHHHHHHHHH-HhhcCCHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHhhhH
Confidence 4566677788888888887743 3443 44444443 478888999999999999998753 2233445667778899
Q ss_pred HHcCCCchHHHHHHHHHHHH
Q 011759 285 LEIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 285 y~~~~~~eeAl~~~ekAL~I 304 (478)
|-+..+|.+|...|.+-..+
T Consensus 160 lVrl~kf~Eaa~a~lKe~~~ 179 (308)
T KOG1585|consen 160 LVRLEKFTEAATAFLKEGVA 179 (308)
T ss_pred hhhhHHhhHHHHHHHHhhhH
Confidence 99999999998888775443
No 181
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.13 E-value=0.18 Score=55.58 Aligned_cols=65 Identities=22% Similarity=0.088 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 011759 232 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 232 ~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I 304 (478)
+.-+|..|+.+|...|+|++|+.+..+||..- |.+.+.|+-.|.+|...|++.+|..+++.|-.+
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--------Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L 257 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--------PTLVELYMTKARILKHAGDLKEAAEAMDEAREL 257 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 45688999999999999999999999999864 556799999999999999999999999998765
No 182
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.10 E-value=0.017 Score=45.21 Aligned_cols=52 Identities=19% Similarity=0.274 Sum_probs=44.5
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 264 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~ 264 (478)
++++.|+++++.++.+ .|.....|..+|.++..+|+|.+|+.+|+++|++.+
T Consensus 9 ~~~~~A~~~~~~~l~~-------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 9 EDYEEALEVLERALEL-------DPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred CCHHHHHHHHHHHHHh-------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 6788888888888766 345677899999999999999999999999996654
No 183
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.019 Score=57.10 Aligned_cols=85 Identities=18% Similarity=0.094 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHH
Q 011759 215 LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEA 294 (478)
Q Consensus 215 Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeA 294 (478)
|.-|...|.+.+--.|..+.-|.+-+..|+.+.+|+....+.++||+|...+ +..||.||.++.....|++|
T Consensus 26 y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~--------vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 26 YDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL--------VKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred hchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH--------HHHHHHHHHHHHhhccccHH
Confidence 3344445555544467788889999999999999999999999999987654 69999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 011759 295 IPYCQKAISVCKS 307 (478)
Q Consensus 295 l~~~ekAL~I~k~ 307 (478)
|.++++|..+.+.
T Consensus 98 I~~Lqra~sl~r~ 110 (284)
T KOG4642|consen 98 IKVLQRAYSLLRE 110 (284)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887654
No 184
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=95.93 E-value=0.037 Score=61.29 Aligned_cols=118 Identities=11% Similarity=0.114 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCCc
Q 011759 67 DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKD 146 (478)
Q Consensus 67 ~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~d 146 (478)
..|+.+.-++|..|+|..........|.- +|+.++.+-..|-.|.-+|
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k--------~~eHgeslAmkGL~L~~lg------------------------ 55 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKK--------FPEHGESLAMKGLTLNCLG------------------------ 55 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHh--------CCccchhHHhccchhhccc------------------------
Confidence 46788889999999999999998888883 5666667777777776542
Q ss_pred cccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHhc
Q 011759 147 DSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHW 226 (478)
Q Consensus 147 e~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~l 226 (478)
+-+.|++....++.+
T Consensus 56 ------------------------------------------------------------~~~ea~~~vr~glr~----- 70 (700)
T KOG1156|consen 56 ------------------------------------------------------------KKEEAYELVRLGLRN----- 70 (700)
T ss_pred ------------------------------------------------------------chHHHHHHHHHHhcc-----
Confidence 223344444444331
Q ss_pred CCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCc
Q 011759 227 GDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKP 291 (478)
Q Consensus 227 ~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~ 291 (478)
.+.---||..||.++....+|++||.+|+.||.|-+..+ .+|+-|++....+++|
T Consensus 71 --d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~--------qilrDlslLQ~QmRd~ 125 (700)
T KOG1156|consen 71 --DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNL--------QILRDLSLLQIQMRDY 125 (700)
T ss_pred --CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHHHHHhh
Confidence 122234899999999999999999999999988755433 4444444444444444
No 185
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.85 E-value=0.085 Score=52.47 Aligned_cols=98 Identities=16% Similarity=0.109 Sum_probs=64.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhcC-------------------CCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 011759 206 SDLDLAWKMLDVARAIAEKHWG-------------------DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERM 266 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~-------------------~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~l 266 (478)
+.++.|-++|.+|..+|.-.-. +.-+.+.+|..-+..|... +..+|+.+++++++|.-..
T Consensus 28 ~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~ 106 (288)
T KOG1586|consen 28 NKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDM 106 (288)
T ss_pred cchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhh
Confidence 3566667777777666643211 1223455666555555444 7888889999999988765
Q ss_pred cCCCChHHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHH
Q 011759 267 VEPDSRHIAELNFRICLCLEIG-SKPQEAIPYCQKAISVCK 306 (478)
Q Consensus 267 lg~d~r~iAea~~~LG~ay~~~-~~~eeAl~~~ekAL~I~k 306 (478)
- .-+.-|.-|..||-.|+.. .++++||.||++|-+-++
T Consensus 107 G--rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk 145 (288)
T KOG1586|consen 107 G--RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYK 145 (288)
T ss_pred h--HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHc
Confidence 3 2344566677788888866 788888888888776654
No 186
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.84 E-value=0.12 Score=55.87 Aligned_cols=130 Identities=12% Similarity=-0.000 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCC
Q 011759 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (478)
Q Consensus 66 A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~ 145 (478)
.....+.+...|..|+|++|...+...+.. +|.+.-++-..|..+++.
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~------------------------ 353 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEA------------------------ 353 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHc------------------------
Confidence 556778899999999999999999995554 788888888888888764
Q ss_pred ccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011759 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (478)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~ 225 (478)
+....|.+.|+.++..
T Consensus 354 ------------------------------------------------------------nk~~~A~e~~~kal~l---- 369 (484)
T COG4783 354 ------------------------------------------------------------NKAKEAIERLKKALAL---- 369 (484)
T ss_pred ------------------------------------------------------------CChHHHHHHHHHHHhc----
Confidence 2233456666666543
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 011759 226 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 302 (478)
Q Consensus 226 l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL 302 (478)
.+...-...++|..++..|++.+|+..+...+.= .+.-+..|+.|+.+|..+|+..+|...+-..+
T Consensus 370 ---~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~--------~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 370 ---DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN--------DPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred ---CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc--------CCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 2333557789999999999999888777665432 22335778888888888887777666554433
No 187
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.76 E-value=0.18 Score=54.47 Aligned_cols=42 Identities=24% Similarity=0.214 Sum_probs=24.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011759 72 KGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (478)
Q Consensus 72 ~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (478)
+|..++..+++.+|.+.|.+++.+ .|....+.++||.+|+..
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~l--------~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALAL--------DPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhc--------CCCccHHHHHHHHHHHhc
Confidence 345555566666666666666665 355555666666666543
No 188
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.76 E-value=0.12 Score=43.54 Aligned_cols=77 Identities=19% Similarity=0.077 Sum_probs=59.3
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDS--MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICL 283 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~--~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ 283 (478)
+|+..|.+.|.............. ..+..+..++|.++...|++++|+..+++|++|.++.- +.+-++.++..|..
T Consensus 12 ~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~--D~~~l~~al~~~~~ 89 (94)
T PF12862_consen 12 GDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG--DRRCLAYALSWLAN 89 (94)
T ss_pred CCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHH
Confidence 688899888888887766654432 24667789999999999999999999999999999985 44455555555444
Q ss_pred H
Q 011759 284 C 284 (478)
Q Consensus 284 a 284 (478)
.
T Consensus 90 l 90 (94)
T PF12862_consen 90 L 90 (94)
T ss_pred H
Confidence 3
No 189
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.70 E-value=0.36 Score=55.25 Aligned_cols=56 Identities=21% Similarity=0.205 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011759 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (478)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (478)
+++|..|..+-++|--++++=++...+++|++|. +++..-| +-..||+|+.-|-..
T Consensus 816 lEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiA-E~~DRiH--Lr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 816 LEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIA-ETKDRIH--LRNTYYNYAKYLEAR 871 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH-hhcccee--hhhhHHHHHHHHHhh
Confidence 5678888888888888888888999999999984 3333344 447899998877554
No 190
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=95.70 E-value=0.1 Score=60.46 Aligned_cols=54 Identities=19% Similarity=0.153 Sum_probs=38.7
Q ss_pred hhhHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011759 60 EKTVEFADELMEKGTNAL-----KESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (478)
Q Consensus 60 ~~~l~~A~~L~~~G~~~~-----~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (478)
.|.++.+.-++..+..++ ..++-..|..+|-+|+.+ .+.+|.+|-.+|..+...
T Consensus 447 ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~ali~alrl--------d~~~apaf~~LG~iYrd~ 505 (1238)
T KOG1127|consen 447 EKMMDVALLLECENSEFWVALGCMRKNSALALHALIRALRL--------DVSLAPAFAFLGQIYRDS 505 (1238)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--------ccchhHHHHHHHHHHHHH
Confidence 344555555555554443 356788888899999888 688899999999888765
No 191
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.69 E-value=0.56 Score=47.07 Aligned_cols=174 Identities=17% Similarity=0.137 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCC
Q 011759 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (478)
Q Consensus 65 ~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~ 144 (478)
-+..|.+.|...+..|+|.+|+..|..... .-.+|+..+ .+.+.++-|++..++.+..+..-
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~--~~p~s~~~~---qa~l~l~yA~Yk~~~y~~A~~~~------------- 94 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDS--RHPFSPYSE---QAQLDLAYAYYKNGEYDLALAYI------------- 94 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCcccH---HHHHHHHHHHHhcccHHHHHHHH-------------
Confidence 378889999999999999999999987663 223344443 36666666777665443332210
Q ss_pred CccccccccCCCCCccCCCCccccc----C-CCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHH
Q 011759 145 KDDSVKNAVNGESSTASVSSSAEQH----G-SSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVAR 219 (478)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~~~~----~-~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar 219 (478)
|. .....+.+. +..-. + +.-.+ -+....|-..+.+-+....
T Consensus 95 -dr--Fi~lyP~~~------n~dY~~YlkgLs~~~~-------------------------i~~~~rDq~~~~~A~~~f~ 140 (254)
T COG4105 95 -DR--FIRLYPTHP------NADYAYYLKGLSYFFQ-------------------------IDDVTRDQSAARAAFAAFK 140 (254)
T ss_pred -HH--HHHhCCCCC------ChhHHHHHHHHHHhcc-------------------------CCccccCHHHHHHHHHHHH
Confidence 00 000000000 00000 0 00000 0001123444444444445
Q ss_pred HHHHHhcCCC-------------chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 011759 220 AIAEKHWGDS-------------MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 286 (478)
Q Consensus 220 ~I~ek~l~~~-------------~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~ 286 (478)
.+..+.++.. ..+|.--..+|..|++++.|--|+..++..++-. ++.+.+=++|..|..+|.
T Consensus 141 ~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y-----~~t~~~~eaL~~l~eaY~ 215 (254)
T COG4105 141 ELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENY-----PDTSAVREALARLEEAYY 215 (254)
T ss_pred HHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcc-----ccccchHHHHHHHHHHHH
Confidence 5555555421 2355666788999999999999999999877653 355677799999999999
Q ss_pred cCCCchHHH
Q 011759 287 IGSKPQEAI 295 (478)
Q Consensus 287 ~~~~~eeAl 295 (478)
.+|-.++|-
T Consensus 216 ~lgl~~~a~ 224 (254)
T COG4105 216 ALGLTDEAK 224 (254)
T ss_pred HhCChHHHH
Confidence 999988873
No 192
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.61 E-value=0.34 Score=54.67 Aligned_cols=78 Identities=9% Similarity=0.029 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHH
Q 011759 216 DVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAI 295 (478)
Q Consensus 216 e~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl 295 (478)
+.|+.+|.+.... -..+|+.|...|...|++++|+..|++.+.. -+.|+ ..+|..|-.+|...|.+++|.
T Consensus 377 ~~A~~vf~~m~~~---d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~---g~~Pd----~~T~~~ll~a~~~~g~~~~a~ 446 (697)
T PLN03081 377 EDARNVFDRMPRK---NLISWNALIAGYGNHGRGTKAVEMFERMIAE---GVAPN----HVTFLAVLSACRYSGLSEQGW 446 (697)
T ss_pred HHHHHHHHhCCCC---CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCC----HHHHHHHHHHHhcCCcHHHHH
Confidence 4444455444321 2357888888999999999999888886532 22223 245666667777777777777
Q ss_pred HHHHHHHH
Q 011759 296 PYCQKAIS 303 (478)
Q Consensus 296 ~~~ekAL~ 303 (478)
.+|+...+
T Consensus 447 ~~f~~m~~ 454 (697)
T PLN03081 447 EIFQSMSE 454 (697)
T ss_pred HHHHHHHH
Confidence 77766553
No 193
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.56 E-value=0.2 Score=48.92 Aligned_cols=109 Identities=13% Similarity=0.089 Sum_probs=73.6
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCCccccccccCCCC
Q 011759 78 KESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKNAVNGES 157 (478)
Q Consensus 78 ~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~de~~~~~~~~e~ 157 (478)
....+++|++.|.-|+-. ..+.++.+-..|.+++.++..+-.++..
T Consensus 89 ~~Rt~~~ai~~YkLAll~-~~~~~~~~s~~A~l~LrlAWlyR~~~~~--------------------------------- 134 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLC-AQIKKEKPSKKAGLCLRLAWLYRDLGDE--------------------------------- 134 (214)
T ss_pred CCCCHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHhhccCCH---------------------------------
Confidence 346899999999999876 5667777788898888887766543100
Q ss_pred CccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q 011759 158 STASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKVDILS 237 (478)
Q Consensus 158 a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~ 237 (478)
+.+..-+..|.+.|+.|...-. .....+.-+.+..
T Consensus 135 --------------------------------------------~~E~~fl~~Al~~y~~a~~~e~-~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 135 --------------------------------------------ENEKRFLRKALEFYEEAYENED-FPIEGMDEATLLY 169 (214)
T ss_pred --------------------------------------------HHHHHHHHHHHHHHHHHHHhCc-CCCCCchHHHHHH
Confidence 0111334444444444432111 1112456788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 011759 238 ALAEVALEREDIETSLSDYQKALTILER 265 (478)
Q Consensus 238 ~LGev~le~g~feeAl~dy~kAL~I~~~ 265 (478)
.||+++.+.|+|++|+..|.+.+.....
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999988765543
No 194
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.52 E-value=0.0066 Score=41.98 Aligned_cols=33 Identities=24% Similarity=0.144 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHH
Q 011759 255 DYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAI 295 (478)
Q Consensus 255 dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl 295 (478)
+|++||++.+.. +.+|++||.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n--------~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNN--------AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCC--------HHHHHHHHHHHHHCcCHHhhc
Confidence 377888776544 699999999999999999986
No 195
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.51 E-value=0.34 Score=57.79 Aligned_cols=86 Identities=20% Similarity=0.213 Sum_probs=59.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 285 (478)
++++.|+++|+..+.. +.. --..+|+.|...|...|++++|+..|++.... -+.++ ..+|..|-.+|
T Consensus 663 G~~eeA~~l~~eM~k~-----G~~-pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~---g~~Pd----vvtyN~LI~gy 729 (1060)
T PLN03218 663 GDLDKAFEILQDARKQ-----GIK-LGTVSYSSLMGACSNAKNWKKALELYEDIKSI---KLRPT----VSTMNALITAL 729 (1060)
T ss_pred CCHHHHHHHHHHHHHc-----CCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHH
Confidence 4566666655554321 111 12568999999999999999999988875432 12222 36688899999
Q ss_pred HcCCCchHHHHHHHHHHHH
Q 011759 286 EIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 286 ~~~~~~eeAl~~~ekAL~I 304 (478)
...|++++|+..|++....
T Consensus 730 ~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 730 CEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHc
Confidence 9999999999999886644
No 196
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.50 E-value=0.0097 Score=41.14 Aligned_cols=30 Identities=23% Similarity=0.490 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhcc
Q 011759 88 CFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEE 125 (478)
Q Consensus 88 ~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~e 125 (478)
+|.+|+++ +|.++.+|++||.+|+..|+.+
T Consensus 1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~ 30 (34)
T PF13431_consen 1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYE 30 (34)
T ss_pred ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHH
Confidence 58899998 8999999999999999987654
No 197
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=95.43 E-value=0.098 Score=58.33 Aligned_cols=86 Identities=17% Similarity=0.154 Sum_probs=70.7
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 285 (478)
+.|+.|..+|..||.+ .....+|+.-+.+...++++++|+..+++||+++.... -.|..||.+|
T Consensus 632 ~e~eraR~llakar~~--------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~--------Kl~lmlGQi~ 695 (913)
T KOG0495|consen 632 DELERARDLLAKARSI--------SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFH--------KLWLMLGQIE 695 (913)
T ss_pred ccHHHHHHHHHHHhcc--------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchH--------HHHHHHhHHH
Confidence 4566666666666652 23567899999999999999999999999999887654 7899999999
Q ss_pred HcCCCchHHHHHHHHHHHHHHH
Q 011759 286 EIGSKPQEAIPYCQKAISVCKS 307 (478)
Q Consensus 286 ~~~~~~eeAl~~~ekAL~I~k~ 307 (478)
+.+++.+.|...|-.-+..|..
T Consensus 696 e~~~~ie~aR~aY~~G~k~cP~ 717 (913)
T KOG0495|consen 696 EQMENIEMAREAYLQGTKKCPN 717 (913)
T ss_pred HHHHHHHHHHHHHHhccccCCC
Confidence 9999999999999988876653
No 198
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.42 E-value=0.38 Score=48.26 Aligned_cols=95 Identities=13% Similarity=0.082 Sum_probs=67.3
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 285 (478)
.+-+.|+.+|.++..+++.....+ .-.+-|..++.++....+|++|-..|.+-..+..++-.-.++ -..+..+=++|
T Consensus 124 v~Pd~AlqlYqralavve~~dr~~-ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~--~k~~va~ilv~ 200 (308)
T KOG1585|consen 124 VKPDDALQLYQRALAVVEEDDRDQ-MAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQ--CKAYVAAILVY 200 (308)
T ss_pred CCHHHHHHHHHHHHHHHhccchHH-HHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccH--HHHHHHHHHHH
Confidence 345678888888888887653222 335678889999999999999999998877777765422222 23344455667
Q ss_pred HcCCCchHHHHHHHHHHH
Q 011759 286 EIGSKPQEAIPYCQKAIS 303 (478)
Q Consensus 286 ~~~~~~eeAl~~~ekAL~ 303 (478)
....+|..|..+|+..-.
T Consensus 201 L~~~Dyv~aekc~r~~~q 218 (308)
T KOG1585|consen 201 LYAHDYVQAEKCYRDCSQ 218 (308)
T ss_pred hhHHHHHHHHHHhcchhc
Confidence 777799999888877443
No 199
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.31 Score=49.88 Aligned_cols=131 Identities=23% Similarity=0.282 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccC--CccCCCCCCcCCCCCCCC
Q 011759 67 DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEA--DPLVSVPKKEGDSQQGSD 144 (478)
Q Consensus 67 ~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~es--dvLg~~~~~~~e~~~~~~ 144 (478)
...+..|...+..++|.+|...|..++.. .|+++++.+.|+.+|+..++.+. .+|...|...
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~--------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-------- 198 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQA--------APENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-------- 198 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHh--------CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc--------
Confidence 44566788899999999999999999998 78899999999999999865532 2333222100
Q ss_pred CccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHH---
Q 011759 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAI--- 221 (478)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I--- 221 (478)
.+ .....+....+.++.|..+
T Consensus 199 --------------------------------------~~------------------~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 199 --------------------------------------QD------------------KAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred --------------------------------------hh------------------hHHHHHHHHHHHHHHHhcCCCH
Confidence 00 0011133335556555422
Q ss_pred --HHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 011759 222 --AEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSR 272 (478)
Q Consensus 222 --~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r 272 (478)
+++.+...+.-.+.-+.||.++.-.|+++.|++++ |.|.++..+..+.
T Consensus 223 ~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~L---l~~l~~d~~~~d~ 272 (304)
T COG3118 223 QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHL---LALLRRDRGFEDG 272 (304)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH---HHHHHhcccccCc
Confidence 23333334556788899999999999999998877 5555655555443
No 200
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=95.36 E-value=0.16 Score=53.09 Aligned_cols=82 Identities=13% Similarity=0.157 Sum_probs=51.2
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 285 (478)
+|++.|.+++..-+.| .+=-|..|..-+.+|...|....||.+++.+-++.... .+.||.++..|
T Consensus 169 GD~~~ai~~i~~llEi-------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~Dn--------Te~~ykis~L~ 233 (504)
T KOG0624|consen 169 GDCQNAIEMITHLLEI-------QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDN--------TEGHYKISQLL 233 (504)
T ss_pred CchhhHHHHHHHHHhc-------CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc--------hHHHHHHHHHH
Confidence 4555555554433322 22346677888899999999999999999887776543 25555555555
Q ss_pred HcCCCchHHHHHHHHHH
Q 011759 286 EIGSKPQEAIPYCQKAI 302 (478)
Q Consensus 286 ~~~~~~eeAl~~~ekAL 302 (478)
...|+...++...+.+|
T Consensus 234 Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 234 YTVGDAENSLKEIRECL 250 (504)
T ss_pred HhhhhHHHHHHHHHHHH
Confidence 55555555554444444
No 201
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.32 E-value=0.015 Score=36.16 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 011759 276 ELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 276 ea~~~LG~ay~~~~~~eeAl~~~ekAL~I 304 (478)
.+|+++|.+|...+++++|+.+|++++.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 57899999999999999999999999875
No 202
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.12 Score=53.64 Aligned_cols=97 Identities=16% Similarity=0.170 Sum_probs=79.3
Q ss_pred cCcChHHHHHHHHHHHHHHHHHhcC----CCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q 011759 203 EDESDLDLAWKMLDVARAIAEKHWG----DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELN 278 (478)
Q Consensus 203 Ed~ddle~AwE~Le~Ar~I~ek~l~----~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~ 278 (478)
.++++.--...-|..|+..|.+-+. +.--.|-+|+|-+-..+..|||..||.|..++|.+...++ -+|
T Consensus 85 KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~--------Ka~ 156 (390)
T KOG0551|consen 85 KEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL--------KAY 156 (390)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh--------hhh
Confidence 3456665666677888888877654 2233588999999999999999999999999999887664 899
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHHHH
Q 011759 279 FRICLCLEIGSKPQEAIPYCQKAISVCKS 307 (478)
Q Consensus 279 ~~LG~ay~~~~~~eeAl~~~ekAL~I~k~ 307 (478)
|+=+.|+..+.++.+|+..++..+.|...
T Consensus 157 ~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 157 IRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 99999999999999999999888877543
No 203
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.28 E-value=0.021 Score=35.43 Aligned_cols=30 Identities=30% Similarity=0.402 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 011759 234 DILSALAEVALEREDIETSLSDYQKALTIL 263 (478)
Q Consensus 234 d~~~~LGev~le~g~feeAl~dy~kAL~I~ 263 (478)
.+|.++|.++...++|++|+.+|++++++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 578999999999999999999999999764
No 204
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=95.25 E-value=0.21 Score=58.03 Aligned_cols=145 Identities=14% Similarity=0.050 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCCcc
Q 011759 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDD 147 (478)
Q Consensus 68 ~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~de 147 (478)
....+|-.++..+++..|+..|+-|+.+ .|.-.+++..+|.+|...||+...
T Consensus 564 nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W~gLGeAY~~sGry~~A-------------------- 615 (1238)
T KOG1127|consen 564 NWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLWLGLGEAYPESGRYSHA-------------------- 615 (1238)
T ss_pred hhhhccccccCccchhhHHHHHHHHhcC--------CchhHHHHHHHHHHHHhcCceehH--------------------
Confidence 3445888899999999999999999998 899999999999999988666322
Q ss_pred ccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcC
Q 011759 148 SVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWG 227 (478)
Q Consensus 148 ~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~l~ 227 (478)
..++.+|-.
T Consensus 616 ----------------------------------------------------------------lKvF~kAs~------- 624 (1238)
T KOG1127|consen 616 ----------------------------------------------------------------LKVFTKASL------- 624 (1238)
T ss_pred ----------------------------------------------------------------HHhhhhhHh-------
Confidence 222222221
Q ss_pred CCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Q 011759 228 DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 307 (478)
Q Consensus 228 ~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~ 307 (478)
-.|.---+.+..+.+.+.+|.|.+|+.-|..-+.-+..... -.-.+|++|.+++..+...|=+.+|..+|+++|++|.-
T Consensus 625 LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~-~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~ 703 (1238)
T KOG1127|consen 625 LRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERT-GQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIV 703 (1238)
T ss_pred cCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 12333345566778889999999999999887776654432 23457999999999999999999999999999999988
Q ss_pred HHHHH
Q 011759 308 RVQRL 312 (478)
Q Consensus 308 rl~~l 312 (478)
.|.+.
T Consensus 704 ~l~h~ 708 (1238)
T KOG1127|consen 704 SLIHS 708 (1238)
T ss_pred HHHHh
Confidence 77665
No 205
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.25 Score=50.38 Aligned_cols=83 Identities=14% Similarity=0.012 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 011759 208 LDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALERED---IETSLSDYQKALTILERMVEPDSRHIAELNFRICLC 284 (478)
Q Consensus 208 le~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~---feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~a 284 (478)
+..|..-|..|..| .++..+++..+|+++.-+.+ -.++...|+++|.+.... ..+++.||+.
T Consensus 172 ~~~A~~AY~~A~rL-------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~--------iral~lLA~~ 236 (287)
T COG4235 172 ASDALLAYRNALRL-------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPAN--------IRALSLLAFA 236 (287)
T ss_pred hhHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCcc--------HHHHHHHHHH
Confidence 33444445555544 23446677777777665543 456777777777665433 4789999999
Q ss_pred HHcCCCchHHHHHHHHHHHHH
Q 011759 285 LEIGSKPQEAIPYCQKAISVC 305 (478)
Q Consensus 285 y~~~~~~eeAl~~~ekAL~I~ 305 (478)
+...|+|.+|+..+++-|.+.
T Consensus 237 afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 237 AFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHcccHHHHHHHHHHHHhcC
Confidence 999999999999999987654
No 206
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.17 E-value=0.51 Score=56.29 Aligned_cols=167 Identities=10% Similarity=0.052 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCC--ccCCCCCCcCCCCCCC
Q 011759 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEAD--PLVSVPKKEGDSQQGS 143 (478)
Q Consensus 66 A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esd--vLg~~~~~~~e~~~~~ 143 (478)
...+..+-..+...|++++|..+|.+..+. | ..|. ..+|..+-.+|...++.+.. +|....+.
T Consensus 614 ~~tynsLI~ay~k~G~~deAl~lf~eM~~~-----G-v~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-------- 678 (1060)
T PLN03218 614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKK-----G-VKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ-------- 678 (1060)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--------
Confidence 456777788899999999999999987653 2 2344 45677777777766544321 11100000
Q ss_pred CCccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011759 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 223 (478)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~e 223 (478)
+ ..++. ...+ ..-...-..++++.|+++|+..+.
T Consensus 679 --------G---------~~pd~---~tyn-----------------------sLI~ay~k~G~~eeA~~lf~eM~~--- 712 (1060)
T PLN03218 679 --------G---------IKLGT---VSYS-----------------------SLMGACSNAKNWKKALELYEDIKS--- 712 (1060)
T ss_pred --------C---------CCCCH---HHHH-----------------------HHHHHHHhCCCHHHHHHHHHHHHH---
Confidence 0 00000 0000 000000112456666665554322
Q ss_pred HhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 011759 224 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 303 (478)
Q Consensus 224 k~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~ 303 (478)
.+..+. ..+|+.|-..|...|++++|+..|++.... -+.|+ ..+|..|-.+|...|++++|...|.+.++
T Consensus 713 --~g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~---Gi~Pd----~~Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 713 --IKLRPT-VSTMNALITALCEGNQLPKALEVLSEMKRL---GLCPN----TITYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred --cCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 122222 467999999999999999999999986432 22233 35777888899999999999999988765
No 207
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.16 E-value=0.31 Score=54.98 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 011759 233 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 300 (478)
Q Consensus 233 Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ek 300 (478)
+.+|..|-..+...|+++.|...+++.+.+. +++ ..+|..|..+|...|++++|.+.+++
T Consensus 494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-----p~~---~~~y~~L~~~y~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 494 VNMWAALLTACRIHKNLELGRLAAEKLYGMG-----PEK---LNNYVVLLNLYNSSGRQAEAAKVVET 553 (697)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-----CCC---CcchHHHHHHHHhCCCHHHHHHHHHH
Confidence 3457777777777777777766666654332 222 35677888888888888888777765
No 208
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.16 E-value=0.39 Score=52.27 Aligned_cols=61 Identities=10% Similarity=-0.015 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHH
Q 011759 233 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQ 299 (478)
Q Consensus 233 Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~e 299 (478)
..+...||.+..++|+.++||.+|+..++.... ...-.+|++|-.||...++|.++...+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~------~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN------LDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc------cchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 556778999999999999999999987765531 1234789999999999998877655443
No 209
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.10 E-value=0.21 Score=50.27 Aligned_cols=88 Identities=18% Similarity=0.123 Sum_probs=69.4
Q ss_pred cChHHHHHHHHHHHHHHHH-HhcCCCchHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHh--cCCCC----hHHHH
Q 011759 205 ESDLDLAWKMLDVARAIAE-KHWGDSMEKVDILSALAEVALERE-DIETSLSDYQKALTILERM--VEPDS----RHIAE 276 (478)
Q Consensus 205 ~ddle~AwE~Le~Ar~I~e-k~l~~~~~~Ad~~~~LGev~le~g-~feeAl~dy~kAL~I~~~l--lg~d~----r~iAe 276 (478)
.+|++.|.-|+.++..+.. ..+.....+++++.++|.-.+..+ +|+.|+..+++|++|.... ....+ ..-..
T Consensus 6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~ 85 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLS 85 (278)
T ss_pred hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHH
Confidence 3789999999999998874 222234678999999999999999 9999999999999997652 11222 34567
Q ss_pred HHHHHHHHHHcCCCch
Q 011759 277 LNFRICLCLEIGSKPQ 292 (478)
Q Consensus 277 a~~~LG~ay~~~~~~e 292 (478)
++..|+.+|...+.++
T Consensus 86 iL~~La~~~l~~~~~~ 101 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYE 101 (278)
T ss_pred HHHHHHHHHHcCCChH
Confidence 7888999998888774
No 210
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.07 E-value=1.5 Score=39.11 Aligned_cols=68 Identities=16% Similarity=0.128 Sum_probs=46.6
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPD-SRHIAELNFR 280 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d-~r~iAea~~~ 280 (478)
++++.|...+..++.+ .|.--..|..|-.++...|++..|+..|+++..+..+-+|-. ++.+-..|-.
T Consensus 76 ~~~~~a~~~~~~~l~~-------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~~~ 144 (146)
T PF03704_consen 76 GDYEEALRLLQRALAL-------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALYRE 144 (146)
T ss_dssp T-HHHHHHHHHHHHHH-------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHH
Confidence 4566666555555443 334567899999999999999999999999999999877754 5555555443
No 211
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.04 E-value=0.022 Score=37.68 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 011759 276 ELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 276 ea~~~LG~ay~~~~~~eeAl~~~ekAL~I 304 (478)
+++|++|.+|...|++++|+.+|++.+.-
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 57999999999999999999999998764
No 212
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=94.99 E-value=0.15 Score=57.56 Aligned_cols=103 Identities=21% Similarity=0.145 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCC
Q 011759 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (478)
Q Consensus 66 A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~ 145 (478)
+..+...|..+...|++.+|-.+|-.|+.+ +|+-..+...+|.+|++.|+.
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--------dP~hv~s~~Ala~~lle~G~~--------------------- 734 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALAL--------DPDHVPSMTALAELLLELGSP--------------------- 734 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHhCCc---------------------
Confidence 566788999999999999999999999998 788888999999999987411
Q ss_pred ccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011759 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (478)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~ 225 (478)
.+..+.-||.-|+.+
T Consensus 735 -------------------------------------------------------------~la~~~~~L~dalr~---- 749 (799)
T KOG4162|consen 735 -------------------------------------------------------------RLAEKRSLLSDALRL---- 749 (799)
T ss_pred -------------------------------------------------------------chHHHHHHHHHHHhh----
Confidence 111122244444332
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 011759 226 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILER 265 (478)
Q Consensus 226 l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~ 265 (478)
.+..-++|..||.|+..+|++++|..+|+.|+.+-+.
T Consensus 750 ---dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 750 ---DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred ---CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 3455679999999999999999999999999988654
No 213
>PRK11906 transcriptional regulator; Provisional
Probab=94.95 E-value=0.29 Score=52.84 Aligned_cols=79 Identities=16% Similarity=0.200 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHc
Q 011759 208 LDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEI 287 (478)
Q Consensus 208 le~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~ 287 (478)
++.|...|++|+. ..|+.|.+|..+|.+..-.|+.++|+.++++||++-+ ++++-...+|.+-...
T Consensus 354 ~~~a~~~f~rA~~-------L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP-------~~~~~~~~~~~~~~~~ 419 (458)
T PRK11906 354 AKVSHILFEQAKI-------HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEP-------RRRKAVVIKECVDMYV 419 (458)
T ss_pred hhhHHHHHHHHhh-------cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc-------hhhHHHHHHHHHHHHc
Confidence 4444555555554 3678999999999999999999999999999998744 4567777888885556
Q ss_pred CCCchHHHHHHHH
Q 011759 288 GSKPQEAIPYCQK 300 (478)
Q Consensus 288 ~~~~eeAl~~~ek 300 (478)
....++|+..|-+
T Consensus 420 ~~~~~~~~~~~~~ 432 (458)
T PRK11906 420 PNPLKNNIKLYYK 432 (458)
T ss_pred CCchhhhHHHHhh
Confidence 7778899988854
No 214
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=94.87 E-value=0.26 Score=52.57 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011759 207 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQK 258 (478)
Q Consensus 207 dle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~k 258 (478)
++++|.+++..|. ...|.--.+|..|+.+|...|+|+.|+--+..
T Consensus 249 ~~~lAL~iAk~av-------~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 249 KYELALEIAKKAV-------ELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred CHHHHHHHHHHHH-------HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 3455554444444 33567788999999999999999999865543
No 215
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.61 E-value=0.98 Score=45.63 Aligned_cols=51 Identities=18% Similarity=0.006 Sum_probs=42.1
Q ss_pred chHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcC
Q 011759 230 MEKVDILSALAEVALER------EDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIG 288 (478)
Q Consensus 230 ~~~Ad~~~~LGev~le~------g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~ 288 (478)
...+.+|..+|.-.... +.+++++..|++|+.+..... .+||.+|..+...
T Consensus 249 ~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 249 ELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE--------KAWHSWALFNDKL 305 (352)
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH--------HHHHHHHHHHHHH
Confidence 35688999999999988 999999999999999987664 5777777766543
No 216
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.37 E-value=0.027 Score=60.73 Aligned_cols=78 Identities=17% Similarity=0.114 Sum_probs=61.7
Q ss_pred chHHHH--HHHHHHHHHhcCCHHHHHHHHHHHHH-HHHHhc----CCC-----ChHHHHHHHHHHHHHHcCCCchHHHHH
Q 011759 230 MEKVDI--LSALAEVALEREDIETSLSDYQKALT-ILERMV----EPD-----SRHIAELNFRICLCLEIGSKPQEAIPY 297 (478)
Q Consensus 230 ~~~Ad~--~~~LGev~le~g~feeAl~dy~kAL~-I~~~ll----g~d-----~r~iAea~~~LG~ay~~~~~~eeAl~~ 297 (478)
+++..| ++|||-|++..+.|.-++.+|.+||+ ...++- |.. .-.--+++||.|+.|...|++-.|..+
T Consensus 278 ~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqC 357 (696)
T KOG2471|consen 278 PQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQC 357 (696)
T ss_pred chhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHH
Confidence 444444 57999999999999999999999996 444331 111 122357899999999999999999999
Q ss_pred HHHHHHHHHH
Q 011759 298 CQKAISVCKS 307 (478)
Q Consensus 298 ~ekAL~I~k~ 307 (478)
|++|+.++.+
T Consensus 358 f~~av~vfh~ 367 (696)
T KOG2471|consen 358 FQKAVHVFHR 367 (696)
T ss_pred HHHHHHHHhc
Confidence 9999998864
No 217
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=94.29 E-value=0.36 Score=57.78 Aligned_cols=85 Identities=11% Similarity=0.040 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCc
Q 011759 212 WKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKP 291 (478)
Q Consensus 212 wE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~ 291 (478)
.++|++|.++... -.+|..|..||...++|++|.+.|+.-++=..+. -.+|..+|..+..+.+-
T Consensus 1517 ~kVFeRAcqycd~--------~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~--------~~vW~~y~~fLl~~ne~ 1580 (1710)
T KOG1070|consen 1517 KKVFERACQYCDA--------YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT--------RKVWIMYADFLLRQNEA 1580 (1710)
T ss_pred HHHHHHHHHhcch--------HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch--------hhHHHHHHHHHhcccHH
Confidence 3567777766543 2489999999999999999999999888776643 37899999999999999
Q ss_pred hHHHHHHHHHHHHHHH--HHHHH
Q 011759 292 QEAIPYCQKAISVCKS--RVQRL 312 (478)
Q Consensus 292 eeAl~~~ekAL~I~k~--rl~~l 312 (478)
+.|....++||..+.+ +++-+
T Consensus 1581 ~aa~~lL~rAL~~lPk~eHv~~I 1603 (1710)
T KOG1070|consen 1581 EAARELLKRALKSLPKQEHVEFI 1603 (1710)
T ss_pred HHHHHHHHHHHhhcchhhhHHHH
Confidence 9999999999999887 55544
No 218
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.27 E-value=0.34 Score=45.81 Aligned_cols=88 Identities=18% Similarity=0.158 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCch
Q 011759 213 KMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQ 292 (478)
Q Consensus 213 E~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~e 292 (478)
+-|+.-+.-|+..++ ...+-.+|..||+.|+..|+++.|+..|.++.+. .. ...++.+.++++-.+..+.+++.
T Consensus 17 ~~Le~elk~~~~n~~-kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~---~~--~~~~~id~~l~~irv~i~~~d~~ 90 (177)
T PF10602_consen 17 EKLEAELKDAKSNLG-KESIRMALEDLADHYCKIGDLEEALKAYSRARDY---CT--SPGHKIDMCLNVIRVAIFFGDWS 90 (177)
T ss_pred HHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh---cC--CHHHHHHHHHHHHHHHHHhCCHH
Confidence 445555555555444 3567899999999999999999999999986654 22 33456788999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 011759 293 EAIPYCQKAISVCK 306 (478)
Q Consensus 293 eAl~~~ekAL~I~k 306 (478)
....+..+|-.++.
T Consensus 91 ~v~~~i~ka~~~~~ 104 (177)
T PF10602_consen 91 HVEKYIEKAESLIE 104 (177)
T ss_pred HHHHHHHHHHHHHh
Confidence 99888888776643
No 219
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.15 E-value=4.3 Score=36.78 Aligned_cols=120 Identities=16% Similarity=0.077 Sum_probs=80.8
Q ss_pred HHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhH----HHHHHHHHHHHHhhhhccCCccCCCCCCcCC
Q 011759 65 FADEL--MEKGTNALKESDYGEAAECFSRALEIRVSHYGELALEC----VNAYYQYGRALLYKAQEEADPLVSVPKKEGD 138 (478)
Q Consensus 65 ~A~~L--~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~----A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e 138 (478)
.+..| +..|.+.+..|-|++|+.-|.+|.++...+--+..-+. |-+|-.+..++..+
T Consensus 6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~L----------------- 68 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGL----------------- 68 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhh-----------------
Confidence 34444 45568889999999999999999999877665433222 23344444444444
Q ss_pred CCCCCCCccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHH
Q 011759 139 SQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVA 218 (478)
Q Consensus 139 ~~~~~~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~A 218 (478)
+.|+.++..-++|
T Consensus 69 -------------------------------------------------------------------gry~e~L~sA~~a 81 (144)
T PF12968_consen 69 -------------------------------------------------------------------GRYDECLQSADRA 81 (144)
T ss_dssp -------------------------------------------------------------------T-HHHHHHHHHHH
T ss_pred -------------------------------------------------------------------ccHHHHHHHHHHH
Confidence 4566777777899
Q ss_pred HHHHHHhcCCCc----hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 011759 219 RAIAEKHWGDSM----EKVDILSALAEVALEREDIETSLSDYQKALTILERMVE 268 (478)
Q Consensus 219 r~I~ek~l~~~~----~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg 268 (478)
+.-|.+....+. .-+.+-++-|.....+|+.++|+..|+.+-++..+--|
T Consensus 82 L~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG 135 (144)
T PF12968_consen 82 LRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG 135 (144)
T ss_dssp HHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred HHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence 999988766432 23556677888999999999999999999998876544
No 220
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=94.14 E-value=0.044 Score=58.91 Aligned_cols=101 Identities=18% Similarity=0.181 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCC
Q 011759 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (478)
Q Consensus 65 ~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~ 144 (478)
.|.++-.+++.++..++|+.|+++|++|+++ +|-||.+|-+-..+++.+
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~----------------------- 51 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKV----------------------- 51 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheee-----------------------
Confidence 4677888999999999999999999999998 899998887765444432
Q ss_pred CccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011759 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 224 (478)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek 224 (478)
++|.-|..=+..|+
T Consensus 52 -------------------------------------------------------------e~~~~Al~Da~kai----- 65 (476)
T KOG0376|consen 52 -------------------------------------------------------------ESFGGALHDALKAI----- 65 (476)
T ss_pred -------------------------------------------------------------chhhhHHHHHHhhh-----
Confidence 12222221112222
Q ss_pred hcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011759 225 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 264 (478)
Q Consensus 225 ~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~ 264 (478)
...+..+.+|..-|...+.+++|-+|+.+|++...+..
T Consensus 66 --e~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~P 103 (476)
T KOG0376|consen 66 --ELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAP 103 (476)
T ss_pred --hcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCc
Confidence 22467888999999999999999999999998877664
No 221
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.06 E-value=0.95 Score=41.69 Aligned_cols=51 Identities=24% Similarity=0.291 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011759 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (478)
Q Consensus 66 A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (478)
+..|...|...+..|+|.+|++.|+....-. =+|+.++ .+.+++|-+++..
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry--P~g~ya~---qAqL~l~yayy~~ 60 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY--PFGEYAE---QAQLDLAYAYYKQ 60 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCCcccH---HHHHHHHHHHHHc
Confidence 6789999999999999999998887655432 1345554 5888888899864
No 222
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.78 E-value=0.14 Score=36.64 Aligned_cols=37 Identities=27% Similarity=0.329 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 011759 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGE 102 (478)
Q Consensus 66 A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge 102 (478)
|+.+..+|-..+...+|++|+.-|.+||+|+.+++.+
T Consensus 1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~ 37 (38)
T PF10516_consen 1 ADVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP 37 (38)
T ss_pred CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3567889999999999999999999999999988754
No 223
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.77 E-value=0.63 Score=48.97 Aligned_cols=47 Identities=13% Similarity=0.012 Sum_probs=31.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhcc
Q 011759 71 EKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEE 125 (478)
Q Consensus 71 ~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~e 125 (478)
=+|-.++..|||++|++.|.-+.+- ..-.+++..+++++.|+++++.
T Consensus 62 Wia~C~fhLgdY~~Al~~Y~~~~~~--------~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 62 WIAHCYFHLGDYEEALNVYTFLMNK--------DDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhcc--------CCCCcccchhHHHHHHHHHHHH
Confidence 3567788888888888888766552 2233566667777777776653
No 224
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.73 E-value=1.9 Score=40.78 Aligned_cols=91 Identities=21% Similarity=0.131 Sum_probs=69.5
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 285 (478)
+|++.|.+.|..+|.-. ...-..++.++++-.|.+..++|.....+..++-.+.... .+.-.-......-|+.+
T Consensus 50 Gd~~~A~k~y~~~~~~~----~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~--~d~~~~nrlk~~~gL~~ 123 (177)
T PF10602_consen 50 GDLEEALKAYSRARDYC----TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG--GDWERRNRLKVYEGLAN 123 (177)
T ss_pred hhHHHHHHHHHHHhhhc----CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHH
Confidence 67888888887766421 1234678999999999999999999999999999999883 23333344555667788
Q ss_pred HcCCCchHHHHHHHHHH
Q 011759 286 EIGSKPQEAIPYCQKAI 302 (478)
Q Consensus 286 ~~~~~~eeAl~~~ekAL 302 (478)
...++|..|...|-.++
T Consensus 124 l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 124 LAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHhchHHHHHHHHHccC
Confidence 88899999998885543
No 225
>PLN03077 Protein ECB2; Provisional
Probab=93.68 E-value=2.1 Score=49.52 Aligned_cols=49 Identities=2% Similarity=-0.012 Sum_probs=35.3
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKA 259 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kA 259 (478)
+.++.||++|+..+..|.- .++ ...|..|.+++.+.|++++|...+++.
T Consensus 603 g~v~ea~~~f~~M~~~~gi----~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYSI----TPN-LKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred ChHHHHHHHHHHHHHHhCC----CCc-hHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 5677777777766543321 222 368999999999999999999888763
No 226
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=93.67 E-value=0.53 Score=38.51 Aligned_cols=60 Identities=18% Similarity=0.075 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHHHHhh
Q 011759 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSH-YGELALECVNAYYQYGRALLYK 121 (478)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~-~Ge~~pe~A~~y~~YG~ALl~~ 121 (478)
++..|..|+.+|...-..|+|++|..+|.++|+.+... ..+.+|..-..+..--.-++..
T Consensus 2 ~l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k~~eyl~R 62 (75)
T cd02684 2 SLEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQKVLQYVSR 62 (75)
T ss_pred cHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999988774 4788888877666554444444
No 227
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=93.61 E-value=0.32 Score=51.39 Aligned_cols=65 Identities=22% Similarity=0.173 Sum_probs=58.8
Q ss_pred chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 011759 230 MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 303 (478)
Q Consensus 230 ~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~ 303 (478)
++-...|..||.+++..+.|.+|-.+|+.||+.+.. +..|.-||.+|...|+..+|-.+++.+|.
T Consensus 325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s---------~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS---------ASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC---------hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 445689999999999999999999999999998876 46788899999999999999999999984
No 228
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=93.58 E-value=10 Score=39.14 Aligned_cols=37 Identities=27% Similarity=0.150 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHH
Q 011759 273 HIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRV 309 (478)
Q Consensus 273 ~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~rl 309 (478)
..|.+||.+|..+...+++.+|+.+++.|+..++...
T Consensus 249 ~~a~a~~~~a~~~~e~~~~G~aia~L~~A~~~~~~~~ 285 (345)
T cd09034 249 FKALAYYYHGLKLDEANKIGEAIARLQAALELLKESE 285 (345)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999998655443
No 229
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=93.54 E-value=0.23 Score=55.24 Aligned_cols=74 Identities=16% Similarity=-0.020 Sum_probs=62.9
Q ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Q 011759 229 SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSR 308 (478)
Q Consensus 229 ~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~r 308 (478)
.+++.+++...|.....+|+-++|...-+.+|.+..+.. -+|+-+|+++....+|++||.+|+.||.+-+..
T Consensus 37 ~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~--------vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN 108 (700)
T KOG1156|consen 37 FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSH--------VCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDN 108 (700)
T ss_pred CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccc--------hhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc
Confidence 356788999999999999999999999998888544332 799999999999999999999999999875544
Q ss_pred HH
Q 011759 309 VQ 310 (478)
Q Consensus 309 l~ 310 (478)
++
T Consensus 109 ~q 110 (700)
T KOG1156|consen 109 LQ 110 (700)
T ss_pred HH
Confidence 33
No 230
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.52 E-value=0.11 Score=51.33 Aligned_cols=81 Identities=9% Similarity=0.054 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCC
Q 011759 211 AWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSK 290 (478)
Q Consensus 211 AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~ 290 (478)
..-+..+||-=|.+.+.-.|..+++++-||.-+..-|+|+.|.+.|...+++-...- -+|.|.|+++.+.|+
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~--------Ya~lNRgi~~YY~gR 148 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN--------YAHLNRGIALYYGGR 148 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch--------HHHhccceeeeecCc
Confidence 334446667666666666788999999999999999999999999999988876553 789999999999999
Q ss_pred chHHHHHHH
Q 011759 291 PQEAIPYCQ 299 (478)
Q Consensus 291 ~eeAl~~~e 299 (478)
|.-|..-|.
T Consensus 149 ~~LAq~d~~ 157 (297)
T COG4785 149 YKLAQDDLL 157 (297)
T ss_pred hHhhHHHHH
Confidence 988766543
No 231
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.52 E-value=0.18 Score=52.71 Aligned_cols=82 Identities=12% Similarity=0.000 Sum_probs=64.5
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHH
Q 011759 216 DVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAI 295 (478)
Q Consensus 216 e~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl 295 (478)
+.|+.+|.+.....+.-+-.|.+-+..|+.+.+|..|..+...|+.|-+.+ ..+|.+.|.+-..+|...+|.
T Consensus 114 ~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y--------~KAYSRR~~AR~~Lg~~~EAK 185 (536)
T KOG4648|consen 114 EEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY--------VKAYSRRMQARESLGNNMEAK 185 (536)
T ss_pred hHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH--------HHHHHHHHHHHHHHhhHHHHH
Confidence 445566666555445556678888888999999999999999999887765 478888888888888889999
Q ss_pred HHHHHHHHHH
Q 011759 296 PYCQKAISVC 305 (478)
Q Consensus 296 ~~~ekAL~I~ 305 (478)
+-|+.+|++-
T Consensus 186 kD~E~vL~LE 195 (536)
T KOG4648|consen 186 KDCETVLALE 195 (536)
T ss_pred HhHHHHHhhC
Confidence 9999888763
No 232
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=93.37 E-value=0.72 Score=36.57 Aligned_cols=60 Identities=28% Similarity=0.274 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC-CCChhHHHHHHHHHHHHHhhh
Q 011759 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYG-ELALECVNAYYQYGRALLYKA 122 (478)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~G-e~~pe~A~~y~~YG~ALl~~a 122 (478)
+..|..++.+|..+-..|+|.+|+++|.+|++.+..... +..|..-..+...-.-++..+
T Consensus 2 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~k~~~yl~RA 62 (69)
T PF04212_consen 2 LDKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPERRQALRQKMKEYLERA 62 (69)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 356889999999999999999999999999999877765 456777777666665555543
No 233
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=93.32 E-value=0.71 Score=37.51 Aligned_cols=60 Identities=22% Similarity=0.178 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHhhh
Q 011759 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHY-GELALECVNAYYQYGRALLYKA 122 (478)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~-Ge~~pe~A~~y~~YG~ALl~~a 122 (478)
+..|..|+.+|...-..|+|.+|+.+|.+|++.+.... .+..|.....+..--.-++..+
T Consensus 3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~k~~eyl~Ra 63 (75)
T cd02678 3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIRAKCTEYLDRA 63 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHH
Confidence 57799999999999999999999999999999987765 5677777777666555555443
No 234
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.13 E-value=1.8 Score=47.05 Aligned_cols=91 Identities=15% Similarity=0.080 Sum_probs=60.6
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 285 (478)
++++.|.+.|+.|...-.... + -..-|+..||.+++-+.+|++|..+|.+.++. +.-.-|--+|..|.||
T Consensus 281 g~~~~Ai~~~~~a~~~q~~~~--Q-l~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-------s~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 281 GNLEEAIESFERAIESQSEWK--Q-LHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-------SKWSKAFYAYLAAACL 350 (468)
T ss_pred cCHHHHHHHHHHhccchhhHH--h-HHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-------cccHHHHHHHHHHHHH
Confidence 456667777776552111110 1 12458999999999999999999999877763 2223467789999999
Q ss_pred HcCCCchHHHHHHHHHHHHHH
Q 011759 286 EIGSKPQEAIPYCQKAISVCK 306 (478)
Q Consensus 286 ~~~~~~eeAl~~~ekAL~I~k 306 (478)
...++.+.+..+-++|..+++
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~ 371 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFR 371 (468)
T ss_pred HhhccchhhhhhHHHHHHHHH
Confidence 999999444444444444443
No 235
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.99 E-value=0.27 Score=53.38 Aligned_cols=87 Identities=13% Similarity=0.136 Sum_probs=67.6
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 285 (478)
.++..|-++|+..+..| |+-+=-+..-|.++.-.|+.+.|+..|++|+..+.+.-. .-.-++|.||.+|
T Consensus 247 ~~~~~a~~lL~~~~~~y-------P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Q----l~~l~~~El~w~~ 315 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRY-------PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQ----LHHLCYFELAWCH 315 (468)
T ss_pred CCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHh----HHHHHHHHHHHHH
Confidence 56777777766666544 233456788899999999999999999999965544321 1246799999999
Q ss_pred HcCCCchHHHHHHHHHHH
Q 011759 286 EIGSKPQEAIPYCQKAIS 303 (478)
Q Consensus 286 ~~~~~~eeAl~~~ekAL~ 303 (478)
..+.+|++|..+|.+.++
T Consensus 316 ~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 316 MFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHchHHHHHHHHHHHHh
Confidence 999999999999988765
No 236
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.96 E-value=0.15 Score=33.46 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 011759 234 DILSALAEVALEREDIETSLSDYQKALTIL 263 (478)
Q Consensus 234 d~~~~LGev~le~g~feeAl~dy~kAL~I~ 263 (478)
+++..+|.++...|++++|+..|++.+.-.
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 478999999999999999999999988754
No 237
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=92.69 E-value=2.6 Score=41.02 Aligned_cols=61 Identities=13% Similarity=0.063 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 011759 231 EKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 300 (478)
Q Consensus 231 ~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ek 300 (478)
+..+.+..+|.++.-+|+|.+|...|+.++....-.- +.+|| +.-+..+|+..+|-..|..
T Consensus 158 r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~-------ar~~Y--~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 158 RSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ-------ARIYY--AEMLAKQGRLREANAQYVA 218 (251)
T ss_pred CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH-------HHHHH--HHHHHHhcchhHHHHHHHH
Confidence 4567889999999999999999999999988765321 44554 4556678888777665543
No 238
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=92.69 E-value=4.7 Score=42.17 Aligned_cols=34 Identities=24% Similarity=0.202 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Q 011759 274 IAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 307 (478)
Q Consensus 274 iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~ 307 (478)
.|.+||..|+++...++|.+||.+++.|+..++.
T Consensus 254 ~a~A~y~~a~~~~e~~k~GeaIa~L~~A~~~~~~ 287 (346)
T cd09240 254 HALAEYHQSLVAKAQKKFGEEIARLQHALELIKT 287 (346)
T ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999999999999885444
No 239
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=92.46 E-value=6.3 Score=41.24 Aligned_cols=36 Identities=31% Similarity=0.277 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Q 011759 273 HIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSR 308 (478)
Q Consensus 273 ~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~r 308 (478)
.-|.+||..|..+...++|.+|+.+++.|...++..
T Consensus 242 f~A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~~a 277 (348)
T cd09242 242 YKSLAAYYHALALEAAGKYGEAIAYLTQAESILKEA 277 (348)
T ss_pred HHHHHHHHHHHHhHHhccHHHHHHHHHHHHHHHHHH
Confidence 357888999999999999999999999999876554
No 240
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=92.42 E-value=0.16 Score=54.18 Aligned_cols=72 Identities=10% Similarity=0.018 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-HhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Q 011759 235 ILSALAEVALEREDIETSLSDYQKALTILE-RMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 307 (478)
Q Consensus 235 ~~~~LGev~le~g~feeAl~dy~kAL~I~~-~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~ 307 (478)
++.-|-.|++-+|+|..|+..++-- +|.+ .++..--.--..+||.+|.||.+++||.+|+..|...|-.+.+
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r 196 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQR 196 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667888888888888765432 2221 1232223334578999999999999999999999998865443
No 241
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=92.22 E-value=1 Score=37.01 Aligned_cols=59 Identities=15% Similarity=0.207 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHHHHhhh
Q 011759 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSH-YGELALECVNAYYQYGRALLYKA 122 (478)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~-~Ge~~pe~A~~y~~YG~ALl~~a 122 (478)
..|..|+.+|..+-..|+|.+|+.+|.+|++.+... .++.++..-..|...=.-|+..+
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RA 63 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRA 63 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHH
Confidence 458899999999999999999999999999988774 47888888888776666666554
No 242
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.21 E-value=1.7 Score=44.94 Aligned_cols=32 Identities=19% Similarity=0.121 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 011759 273 HIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 273 ~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I 304 (478)
..|.+..++|..+...|+|+.|+.-|+.|+.+
T Consensus 142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqv 173 (459)
T KOG4340|consen 142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQV 173 (459)
T ss_pred CccchhccchheeeccccHHHHHHHHHHHHhh
Confidence 34788999999999999999999999999876
No 243
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=92.10 E-value=0.81 Score=46.65 Aligned_cols=87 Identities=23% Similarity=0.175 Sum_probs=58.8
Q ss_pred ChHHHHHHHH-------HHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q 011759 206 SDLDLAWKML-------DVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELN 278 (478)
Q Consensus 206 ddle~AwE~L-------e~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~ 278 (478)
-.+..||=.| ..|.-||+...........+++.++.+++.+|+|++|...+++||... +.-.+++
T Consensus 167 ~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~--------~~~~d~L 238 (290)
T PF04733_consen 167 TQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD--------PNDPDTL 238 (290)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---------CCHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--------cCCHHHH
Confidence 4566677443 455667776544333456788999999999999999999998887432 2336789
Q ss_pred HHHHHHHHcCCCchHHH-HHHHH
Q 011759 279 FRICLCLEIGSKPQEAI-PYCQK 300 (478)
Q Consensus 279 ~~LG~ay~~~~~~eeAl-~~~ek 300 (478)
.|+..|....|+..++. +++++
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHH
Confidence 99999999999885444 44444
No 244
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=92.00 E-value=1.1 Score=37.02 Aligned_cols=55 Identities=16% Similarity=0.145 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--hhCCCChhHHHHHHHHHHHHHhh
Q 011759 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVS--HYGELALECVNAYYQYGRALLYK 121 (478)
Q Consensus 65 ~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~--~~Ge~~pe~A~~y~~YG~ALl~~ 121 (478)
.|..|..++..+-..|+|++|+.+|.+|++.+.. .|+..+|..-..+ ..++--++
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~i--r~K~~eYl 61 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTI--QEKSNEYL 61 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH--HHHHHHHH
Confidence 4889999999999999999999999999999888 6776666655544 44443333
No 245
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=91.99 E-value=1.4 Score=49.63 Aligned_cols=81 Identities=15% Similarity=0.121 Sum_probs=56.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 285 (478)
++.+.|..+|+.|+.+|- ..-..|..||.|+-.+++.+.|..-|..-++..... ...+..|+..-
T Consensus 665 d~~eeA~rllEe~lk~fp-------~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~--------ipLWllLakle 729 (913)
T KOG0495|consen 665 DNVEEALRLLEEALKSFP-------DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS--------IPLWLLLAKLE 729 (913)
T ss_pred hhHHHHHHHHHHHHHhCC-------chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC--------chHHHHHHHHH
Confidence 556666666666666553 445689999999999999999999998877766443 24566666666
Q ss_pred HcCCCchHHHHHHHHH
Q 011759 286 EIGSKPQEAIPYCQKA 301 (478)
Q Consensus 286 ~~~~~~eeAl~~~ekA 301 (478)
+..+..-+|...+.++
T Consensus 730 Ek~~~~~rAR~ildra 745 (913)
T KOG0495|consen 730 EKDGQLVRARSILDRA 745 (913)
T ss_pred HHhcchhhHHHHHHHH
Confidence 6666666665555554
No 246
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=91.93 E-value=1.4 Score=53.02 Aligned_cols=68 Identities=21% Similarity=0.179 Sum_probs=49.1
Q ss_pred ccCCCCCCCCccCCchhhhHHHHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 011759 44 CNNNCETSGAIADGEREKTVEFADELME-------KGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGR 116 (478)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~l~~A~~L~~-------~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ 116 (478)
+-|..|++++ +..-.++.++|-.|.. +-..|-...+|++|.++|.+-++ .|| +.-.+|..||.
T Consensus 1503 ~lNlEn~yG~--eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~K----KF~----q~~~vW~~y~~ 1572 (1710)
T KOG1070|consen 1503 YLNLENAYGT--EESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLK----KFG----QTRKVWIMYAD 1572 (1710)
T ss_pred HHhHHHhhCc--HHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHH----Hhc----chhhHHHHHHH
Confidence 4578888884 3345567788887777 34466777888999888776554 566 44569999999
Q ss_pred HHHhh
Q 011759 117 ALLYK 121 (478)
Q Consensus 117 ALl~~ 121 (478)
.|+.+
T Consensus 1573 fLl~~ 1577 (1710)
T KOG1070|consen 1573 FLLRQ 1577 (1710)
T ss_pred HHhcc
Confidence 99976
No 247
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=91.91 E-value=1.1 Score=40.48 Aligned_cols=69 Identities=20% Similarity=0.176 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC-----ChHHH--HHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 011759 235 ILSALAEVALEREDIETSLSDYQKALTILERMVEPD-----SRHIA--ELNFRICLCLEIGSKPQEAIPYCQKAIS 303 (478)
Q Consensus 235 ~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d-----~r~iA--ea~~~LG~ay~~~~~~eeAl~~~ekAL~ 303 (478)
-|.+||+..+..+++=.+|-+|++||.+-+++...+ ++.++ -..+||+.-|+.+|+.+=.++|.+-|-+
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE 78 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASE 78 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHH
Confidence 478999999999999999999999999999984222 22222 2457999999999999999999987765
No 248
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=91.89 E-value=5.7 Score=41.65 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Q 011759 273 HIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSR 308 (478)
Q Consensus 273 ~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~r 308 (478)
..|.+||..|..+...++|.+++.+++.|+..++.-
T Consensus 235 f~A~A~y~~a~~~~e~~k~Ge~Ia~L~~A~~~l~~a 270 (355)
T cd09241 235 FKAAAHYRMALVALEKSKYGEEVARLRVALAACKEA 270 (355)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 358889999999988889999999999998865444
No 249
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.77 E-value=2.7 Score=45.89 Aligned_cols=167 Identities=16% Similarity=0.158 Sum_probs=104.1
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCC--ccCCCCCCcCCCCCCCCCccccccccC
Q 011759 77 LKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEAD--PLVSVPKKEGDSQQGSDKDDSVKNAVN 154 (478)
Q Consensus 77 ~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esd--vLg~~~~~~~e~~~~~~~de~~~~~~~ 154 (478)
+...|.+.+.+.|+.+|+|. ...+--.|.++++|+.-.+..-....+ .||++.+..
T Consensus 377 le~ed~ertr~vyq~~l~lI----PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~c------------------ 434 (677)
T KOG1915|consen 377 LEAEDVERTRQVYQACLDLI----PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKC------------------ 434 (677)
T ss_pred HHhhhHHHHHHHHHHHHhhc----CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccC------------------
Confidence 45689999999999999974 334567888999998877754221111 344322110
Q ss_pred CCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcCCCchHHH
Q 011759 155 GESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKVD 234 (478)
Q Consensus 155 ~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad 234 (478)
. .+ +- + + -.=+|++.+..++++|.+|++.+.-.|.-..
T Consensus 435 ---P-----K~--------Kl--F----k--------------------~YIelElqL~efDRcRkLYEkfle~~Pe~c~ 472 (677)
T KOG1915|consen 435 ---P-----KD--------KL--F----K--------------------GYIELELQLREFDRCRKLYEKFLEFSPENCY 472 (677)
T ss_pred ---C-----ch--------hH--H----H--------------------HHHHHHHHHhhHHHHHHHHHHHHhcChHhhH
Confidence 0 00 00 0 0 0135788888999999999999987777777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH-----------------------------HHHHHHHHhcCCC-Ch--HHHHHHHHHH
Q 011759 235 ILSALAEVALEREDIETSLSDYQ-----------------------------KALTILERMVEPD-SR--HIAELNFRIC 282 (478)
Q Consensus 235 ~~~~LGev~le~g~feeAl~dy~-----------------------------kAL~I~~~llg~d-~r--~iAea~~~LG 282 (478)
++...|++-..+|+.+.|...|. ++-.|.+.++... |- =|.-+.|.++
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s 552 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEAS 552 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhcc
Confidence 77777777777777666655444 4445555555432 22 1444455555
Q ss_pred HHHHcCC-----------CchHHHHHHHHHHHHHHH
Q 011759 283 LCLEIGS-----------KPQEAIPYCQKAISVCKS 307 (478)
Q Consensus 283 ~ay~~~~-----------~~eeAl~~~ekAL~I~k~ 307 (478)
......+ ....|...|++|...++.
T Consensus 553 ~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~ 588 (677)
T KOG1915|consen 553 ASEGQEDEDLAELEITDENIKRARKIFERANTYLKE 588 (677)
T ss_pred ccccccccchhhhhcchhHHHHHHHHHHHHHHHHHh
Confidence 5544555 445677777777766543
No 250
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=91.71 E-value=0.5 Score=52.07 Aligned_cols=93 Identities=17% Similarity=0.123 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHcCCCch
Q 011759 215 LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETS-LSDYQKALTILERMVE-PDSRHIAELNFRICLCLEIGSKPQ 292 (478)
Q Consensus 215 Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeA-l~dy~kAL~I~~~llg-~d~r~iAea~~~LG~ay~~~~~~e 292 (478)
+..|+.+|++.....|+.+.+|-.|+.+|.....|... -..+.++.....+.+. +..+..+.+|.-+|+.+...|+++
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~ 437 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD 437 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence 34666677776665678888888888877665444310 0122223322222111 112222578888999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 011759 293 EAIPYCQKAISVCKS 307 (478)
Q Consensus 293 eAl~~~ekAL~I~k~ 307 (478)
+|..+|++|+++...
T Consensus 438 ~A~~~l~rAl~L~ps 452 (517)
T PRK10153 438 EAYQAINKAIDLEMS 452 (517)
T ss_pred HHHHHHHHHHHcCCC
Confidence 999999999987543
No 251
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=91.45 E-value=1.8 Score=34.92 Aligned_cols=61 Identities=26% Similarity=0.233 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHhhh
Q 011759 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHY-GELALECVNAYYQYGRALLYKA 122 (478)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~-Ge~~pe~A~~y~~YG~ALl~~a 122 (478)
.+..|..|+.+|..+-..|+|++|+.+|.+|++.+.... -+..|..-..+..--+-|+..+
T Consensus 4 ~~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~~~k~~eyl~ra 65 (77)
T smart00745 4 YLSKAKELISKALKADEAGDYEEALELYKKAIEYLLEGIKVESDSKRREAVKAKAAEYLDRA 65 (77)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999887754 3556677677666666666553
No 252
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.38 E-value=4.8 Score=44.05 Aligned_cols=142 Identities=17% Similarity=0.163 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCC
Q 011759 64 EFADELMEKGTNALKES--DYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQ 141 (478)
Q Consensus 64 ~~A~~L~~~G~~~~~~g--dy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~ 141 (478)
..+..|++.+..+...+ ++..++.|++-.+...-.. .=-|.+.+.+|..|+..-
T Consensus 5 Ava~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~-----~veart~LqLg~lL~~yT------------------- 60 (629)
T KOG2300|consen 5 AVAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISF-----LVEARTHLQLGALLLRYT------------------- 60 (629)
T ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChH-----HHHHHHHHHHHHHHHHHh-------------------
Confidence 35788999999999999 9999999999888763211 123677888898888650
Q ss_pred CCCCccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHH
Q 011759 142 GSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAI 221 (478)
Q Consensus 142 ~~~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I 221 (478)
+++++|...|+.|..|
T Consensus 61 ----------------------------------------------------------------~N~elAksHLekA~~i 76 (629)
T KOG2300|consen 61 ----------------------------------------------------------------KNVELAKSHLEKAWLI 76 (629)
T ss_pred ----------------------------------------------------------------ccHHHHHHHHHHHHHH
Confidence 4567777777877777
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHH
Q 011759 222 AEKHWGDSMEKVDILSALAEVALERE-DIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPY 297 (478)
Q Consensus 222 ~ek~l~~~~~~Ad~~~~LGev~le~g-~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~ 297 (478)
.+..+..--..-+++..|+++|+... .|+.|...+++++++-.... ----..+++|+..+....+|.-|++.
T Consensus 77 ~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p----~wsckllfQLaql~~idkD~~sA~el 149 (629)
T KOG2300|consen 77 SKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP----YWSCKLLFQLAQLHIIDKDFPSALEL 149 (629)
T ss_pred HcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc----hhhHHHHHHHHHHHhhhccchhHHHH
Confidence 66554321234678899999999888 89999999999999987653 11235678899999889998887765
No 253
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=91.38 E-value=1.8 Score=34.79 Aligned_cols=60 Identities=20% Similarity=0.266 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHhhh
Q 011759 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHY-GELALECVNAYYQYGRALLYKA 122 (478)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~-Ge~~pe~A~~y~~YG~ALl~~a 122 (478)
+..|..|+.+|..+-..|+|++|+.+|.+|++.+.... .+..|..-..|...-.-|+..+
T Consensus 3 ~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l~~k~~~yl~Ra 63 (75)
T cd02656 3 LQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQALKAEKEPKLRKLLRKKVKEYLDRA 63 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999887755 4556777677666666666553
No 254
>PLN03077 Protein ECB2; Provisional
Probab=91.26 E-value=5.4 Score=46.26 Aligned_cols=63 Identities=10% Similarity=0.067 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 011759 233 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 302 (478)
Q Consensus 233 Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL 302 (478)
..+|+.|...|...|++++|+..|++.++ .-+.|+. .+|..|=.+|...|++++|+.+|+...
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~---~g~~Pd~----~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVE---SGVNPDE----VTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCCc----ccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 45788888888888888888888877543 2233343 345555566777777888877777665
No 255
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=91.03 E-value=0.94 Score=44.88 Aligned_cols=73 Identities=27% Similarity=0.346 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH-HcCCCchHHHHHHHHHHHH
Q 011759 232 KVDILSALAEVALERED---IETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL-EIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 232 ~Ad~~~~LGev~le~g~---feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay-~~~~~~eeAl~~~ekAL~I 304 (478)
.++.|.-|+++.....+ -++|...|++|+.+....+++.||.--....|.+.-| +..++.++|+...++|+.-
T Consensus 122 kgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 122 KGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred hccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 57888888888755433 3899999999999999999999998666666666554 6789999888888877653
No 256
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=90.66 E-value=0.81 Score=35.08 Aligned_cols=30 Identities=10% Similarity=0.187 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 011759 276 ELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (478)
Q Consensus 276 ea~~~LG~ay~~~~~~eeAl~~~ekAL~I~ 305 (478)
+++|.|++++...|+|.+|..++++.|++-
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 579999999999999999999999999885
No 257
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=90.52 E-value=2.7 Score=34.65 Aligned_cols=37 Identities=24% Similarity=0.180 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHH
Q 011759 274 IAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQ 310 (478)
Q Consensus 274 iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~rl~ 310 (478)
.|..|...+.-+...|++.+|+.+|+.||+++...+.
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~ 41 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVK 41 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4677888899999999999999999999998665544
No 258
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=90.44 E-value=2 Score=42.97 Aligned_cols=74 Identities=24% Similarity=0.244 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-HHcCCCchHHHHHHHHHHHHH
Q 011759 232 KVDILSALAEVALERED---IETSLSDYQKALTILERMVEPDSRHIAELNFRICLC-LEIGSKPQEAIPYCQKAISVC 305 (478)
Q Consensus 232 ~Ad~~~~LGev~le~g~---feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~a-y~~~~~~eeAl~~~ekAL~I~ 305 (478)
.+|.|.-|+++.....+ -++|...|++|+.|....+++.||.---...|.++. |+.+++.++|+..-++|+.-.
T Consensus 124 KGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 124 KGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 57888899998655444 469999999999999988999998744444444443 456788888887777766543
No 259
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=90.31 E-value=4.3 Score=40.24 Aligned_cols=91 Identities=14% Similarity=0.072 Sum_probs=72.7
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 011759 205 ESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLC 284 (478)
Q Consensus 205 ~ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~a 284 (478)
.++-....+.|..|+..|.+.... --...+...||.-|+..|+|++|+.+|+.++...++- .=...+..++-.|-.|
T Consensus 151 ~~hs~~iI~lL~~A~~~f~~~~~~-R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~C 227 (247)
T PF11817_consen 151 VDHSKLIIELLEKAYEQFKKYGQN-RMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLEC 227 (247)
T ss_pred cchHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHH
Confidence 466778889999999999887542 2345677899999999999999999999997666531 1256678999999999
Q ss_pred HHcCCCchHHHHHH
Q 011759 285 LEIGSKPQEAIPYC 298 (478)
Q Consensus 285 y~~~~~~eeAl~~~ 298 (478)
+...++.+..+.+.
T Consensus 228 a~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 228 AKRLGDVEDYLTTS 241 (247)
T ss_pred HHHhCCHHHHHHHH
Confidence 99999988776654
No 260
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.22 E-value=22 Score=35.85 Aligned_cols=89 Identities=15% Similarity=0.132 Sum_probs=50.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcC-----CH---HHHHHHHHHHHHHHHHhcCCCChH----
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALERE-----DI---ETSLSDYQKALTILERMVEPDSRH---- 273 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g-----~f---eeAl~dy~kAL~I~~~llg~d~r~---- 273 (478)
+++++|.-++++-+.. .+.++++.-++...|..++..= +. .+|+..|+..+. + + |++|-
T Consensus 85 ~~y~~A~~~~drFi~l----yP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~---r-y-PnS~Ya~dA 155 (254)
T COG4105 85 GEYDLALAYIDRFIRL----YPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQ---R-Y-PNSRYAPDA 155 (254)
T ss_pred ccHHHHHHHHHHHHHh----CCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHH---H-C-CCCcchhhH
Confidence 4566666555544433 3446778888888888876542 22 334444433332 2 2 23433
Q ss_pred ----------HHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 011759 274 ----------IAELNFRICLCLEIGSKPQEAIPYCQKAIS 303 (478)
Q Consensus 274 ----------iAea~~~LG~ay~~~~~~eeAl~~~ekAL~ 303 (478)
+|.--+.+|.-|.+.+.|--|+..|+..++
T Consensus 156 ~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e 195 (254)
T COG4105 156 KARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLE 195 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 344445667777777777777777766554
No 261
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.10 E-value=1.3 Score=48.40 Aligned_cols=49 Identities=20% Similarity=0.291 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHc
Q 011759 231 EKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEI 287 (478)
Q Consensus 231 ~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~ 287 (478)
+.-.+++|+|..|+..|+.-.|.++|.++...+...- ..|.+|+-|+.+
T Consensus 333 ks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nP--------rlWLRlAEcCim 381 (696)
T KOG2471|consen 333 KSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNP--------RLWLRLAECCIM 381 (696)
T ss_pred cchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCc--------HHHHHHHHHHHH
Confidence 3467899999999999999999999999999886542 566777766654
No 262
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=89.98 E-value=0.14 Score=55.18 Aligned_cols=85 Identities=16% Similarity=0.050 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHH
Q 011759 215 LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEA 294 (478)
Q Consensus 215 Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeA 294 (478)
|+.|...|.|.+...+.-|..|.+-+..++..++|..|+.|+-+|+++- |..+.+||+-|.++...++|.+|
T Consensus 20 fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--------P~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 20 FDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--------PTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred HHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--------chhhheeeeccHHHHhHHHHHHH
Confidence 4555566666666566777788888899999999999999999999876 44579999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 011759 295 IPYCQKAISVCKS 307 (478)
Q Consensus 295 l~~~ekAL~I~k~ 307 (478)
+.-|++...+...
T Consensus 92 ~~~l~~~~~l~Pn 104 (476)
T KOG0376|consen 92 LLDLEKVKKLAPN 104 (476)
T ss_pred HHHHHHhhhcCcC
Confidence 9999887776643
No 263
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.69 E-value=7.8 Score=41.94 Aligned_cols=35 Identities=11% Similarity=0.076 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 011759 233 VDILSALAEVALEREDIETSLSDYQKALTILERMV 267 (478)
Q Consensus 233 Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~ll 267 (478)
-..|...|-+.+.+|+-++|.++|+.+...+.++-
T Consensus 267 lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elk 301 (568)
T KOG2561|consen 267 LRLELLQGVVAYHQGQRDEAYEALESAHAKLLELK 301 (568)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHee
Confidence 47788999999999999999999999998888764
No 264
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.69 E-value=5.6 Score=44.16 Aligned_cols=80 Identities=23% Similarity=0.264 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 011759 207 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALERE---DIETSLSDYQKALTILERMVEPDSRHIAELNFRICL 283 (478)
Q Consensus 207 dle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g---~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ 283 (478)
|...|..+|.+|-. ....++...||.++.... ++..|..+|..|..-- | ..++|+||.
T Consensus 308 d~~~A~~~~~~aA~---------~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-------~---~~A~~~la~ 368 (552)
T KOG1550|consen 308 DYEKALKLYTKAAE---------LGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG-------H---ILAIYRLAL 368 (552)
T ss_pred cHHHHHHHHHHHHh---------cCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC-------C---hHHHHHHHH
Confidence 45555555544432 245678889999998877 5677777777664322 2 478999999
Q ss_pred HHHcC----CCchHHHHHHHHHHHHH
Q 011759 284 CLEIG----SKPQEAIPYCQKAISVC 305 (478)
Q Consensus 284 ay~~~----~~~eeAl~~~ekAL~I~ 305 (478)
||... .+...|..+|.+|.+.-
T Consensus 369 ~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 369 CYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 99865 36789999999988765
No 265
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=89.62 E-value=16 Score=40.95 Aligned_cols=97 Identities=21% Similarity=0.146 Sum_probs=68.6
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 285 (478)
+++++|..+|++++.+..+ .+..-..-.+...|+.++...+... |+....+++...+. ++..+...+--+.++.+++
T Consensus 74 ~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~-~~~~~w~~~frll~~~l~~ 150 (608)
T PF10345_consen 74 ENLDLAETYLEKAILLCER-HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET-YGHSAWYYAFRLLKIQLAL 150 (608)
T ss_pred CCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHHH
Confidence 4688899999999988877 2222224677888999999999888 99999999999987 3333333333333333333
Q ss_pred HcCCCchHHHHHHHHHHHHHH
Q 011759 286 EIGSKPQEAIPYCQKAISVCK 306 (478)
Q Consensus 286 ~~~~~~eeAl~~~ekAL~I~k 306 (478)
.. +++..|+..+++...+-.
T Consensus 151 ~~-~d~~~Al~~L~~~~~~a~ 170 (608)
T PF10345_consen 151 QH-KDYNAALENLQSIAQLAN 170 (608)
T ss_pred hc-ccHHHHHHHHHHHHHHhh
Confidence 33 789899999888777654
No 266
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=89.45 E-value=1.5 Score=47.99 Aligned_cols=99 Identities=17% Similarity=0.179 Sum_probs=68.2
Q ss_pred cChHHHHHHHHHHHH--HHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC-----------
Q 011759 205 ESDLDLAWKMLDVAR--AIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDS----------- 271 (478)
Q Consensus 205 ~ddle~AwE~Le~Ar--~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~----------- 271 (478)
+.-++.||.-=+... ..-.+.+.-.++-|++|..|++= +.....+|...|+++++.-+..++.+.
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~ 249 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA 249 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence 345778884321111 11122233345678999999872 344578999999999999888877541
Q ss_pred --hH----HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 011759 272 --RH----IAELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (478)
Q Consensus 272 --r~----iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~ 305 (478)
++ ..-+-++|++|....|+.++|+++|+.-++..
T Consensus 250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~ 289 (539)
T PF04184_consen 250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF 289 (539)
T ss_pred hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC
Confidence 11 24556789999999999999999998877543
No 267
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=89.20 E-value=2.2 Score=35.15 Aligned_cols=41 Identities=22% Similarity=0.287 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 011759 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGE 102 (478)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge 102 (478)
.+++|..|+.+|...-..|+|++|..+|.+|++.+.....+
T Consensus 2 ~l~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ekn~ 42 (75)
T cd02680 2 DLERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCINTSNE 42 (75)
T ss_pred CHHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHhcCh
Confidence 35789999999999999999999999999999988764333
No 268
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=88.90 E-value=33 Score=36.21 Aligned_cols=36 Identities=17% Similarity=0.038 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Q 011759 273 HIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSR 308 (478)
Q Consensus 273 ~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~r 308 (478)
.-|.+||..|..+...++|.++|.+++.|+..++.-
T Consensus 250 f~A~A~y~~a~~~~~~~k~Ge~Ia~L~~A~~~l~~a 285 (361)
T cd09239 250 YASIAHLHMGKQSEEQQKMGERVAYYQLANDKLEEA 285 (361)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358889999999999999999999999998854443
No 269
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.78 E-value=1.4 Score=47.19 Aligned_cols=143 Identities=19% Similarity=0.196 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHH-HHHHHHhhccCCCCCCCccccccccccccccccchhhhHHHH
Q 011759 275 AELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQR-LLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEA 353 (478)
Q Consensus 275 Aea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~rl~~-l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 353 (478)
|.+..++|+||...+++++|+.+|+++|.++..-|-- ++++.+ ..+ ..-.+...
T Consensus 22 A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~GIpvg~k~k~~-----------------------~~~--~~W~dAca 76 (560)
T KOG2709|consen 22 AYASVEQGLCYDEVNDWENALAMYEKGLNLIVEGIPVGEKMKNA-----------------------RKS--EMWKDACA 76 (560)
T ss_pred HHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHhcCccccccccc-----------------------ccc--hhhHHHHH
Confidence 5677899999999999999999999999876552210 000000 000 11235567
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhcC----ChhHHHHHHHhhhhccCCCCCCcccccccccccccCCCCCCCCCCCccccc
Q 011759 354 EIETLSGLCGDLEKKLEDLQQVALF----PKSILSEILGMASAKAKGDEKSSTSAVLSSSRMGTANSDGDFDSPTVSTAH 429 (478)
Q Consensus 354 Ei~elk~ll~dl~~KieDlk~~~~~----p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~s~gf~sp~~~~~~ 429 (478)
=|.-||+-+..++.||+=|+...+. |..-.-+..+.+-.+ .+|.-+...|.|-...|+|. +|.. -
T Consensus 77 liQklkes~~~vr~Rl~vL~kqkqsid~~~~q~tpk~~~E~~~k-----rpPllaenPstqyg~~N~sg---APkt---Y 145 (560)
T KOG2709|consen 77 LIQKLKESKSSVRHRLNVLKKQKQSIDEGPKQPTPKKIKEAEEK-----RPPLLAENPSTQYGVENESG---APKT---Y 145 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccCccccCchhhhccCcc-----cCcccccCcchhhccccccC---CCcc---c
Confidence 7889999999999999999873221 111111111111111 34444555555555556652 2322 2
Q ss_pred cCCCCC------ceecccccccccccccCC
Q 011759 430 TSGAAG------VTHLGVVGRGVKRVSMST 453 (478)
Q Consensus 430 ~~~~~~------v~~lgvvg~g~kr~~~~~ 453 (478)
+.-+++ |.+.-|||.-.=|.-++|
T Consensus 146 relAAglrellavrdakvlldE~~R~q~~~ 175 (560)
T KOG2709|consen 146 RELAAGLRELLAVRDAKVLLDEAIRMQLDS 175 (560)
T ss_pred chhhhhhhhhhccchhHHHHHHHHHhhccC
Confidence 234444 445556666666766663
No 270
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=88.59 E-value=5.4 Score=31.48 Aligned_cols=37 Identities=14% Similarity=0.090 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHH
Q 011759 275 AELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQR 311 (478)
Q Consensus 275 Aea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~rl~~ 311 (478)
|..+.+.|+-+...|+|++|+.+|.+|++.+..-+..
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~ 41 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKS 41 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 4556677888889999999999999999987766554
No 271
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.45 E-value=9.4 Score=38.47 Aligned_cols=100 Identities=13% Similarity=0.131 Sum_probs=71.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HHHHh------------------
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALT-ILERM------------------ 266 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~-I~~~l------------------ 266 (478)
+.++.|...|..+....... ......+...-+.+....|+..+|+..++..+. .....
T Consensus 160 g~~~~A~~~l~~~~~~~~~~---~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (352)
T PF02259_consen 160 GNFQLALSALNRLFQLNPSS---ESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLE 236 (352)
T ss_pred CCcHHHHHHHHHHhccCCcc---cCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccc
Confidence 45666665555544322111 111456777788899999999999999998888 22222
Q ss_pred -------cCCCChHHHHHHHHHHHHHHcC------CCchHHHHHHHHHHHHHHHH
Q 011759 267 -------VEPDSRHIAELNFRICLCLEIG------SKPQEAIPYCQKAISVCKSR 308 (478)
Q Consensus 267 -------lg~d~r~iAea~~~LG~ay~~~------~~~eeAl~~~ekAL~I~k~r 308 (478)
........|.+|+.+|.-.... +.+++++.+|++|+.++..-
T Consensus 237 ~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 291 (352)
T PF02259_consen 237 VISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW 291 (352)
T ss_pred cccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH
Confidence 1223577899999999999988 88999999999999987653
No 272
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=88.27 E-value=6.3 Score=44.51 Aligned_cols=97 Identities=16% Similarity=0.240 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 011759 207 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 286 (478)
Q Consensus 207 dle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~ 286 (478)
||+.++-.++..|..|.+.++..+-.-++-.|.|....+..-|++|...|++-+.|++ .|.--.|=.+|.---+.-.
T Consensus 485 DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk---~p~v~diW~tYLtkfi~ry 561 (835)
T KOG2047|consen 485 DLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFK---WPNVYDIWNTYLTKFIKRY 561 (835)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC---CccHHHHHHHHHHHHHHHh
Confidence 5666666778888888888775544556777778777787778888888887776654 1122223333333333322
Q ss_pred cCCCchHHHHHHHHHHHHHH
Q 011759 287 IGSKPQEAIPYCQKAISVCK 306 (478)
Q Consensus 287 ~~~~~eeAl~~~ekAL~I~k 306 (478)
..-+++.|...|++||+.|.
T Consensus 562 gg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 562 GGTKLERARDLFEQALDGCP 581 (835)
T ss_pred cCCCHHHHHHHHHHHHhcCC
Confidence 23356778888888887664
No 273
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=87.83 E-value=4.1 Score=33.41 Aligned_cols=57 Identities=23% Similarity=0.247 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hhCCCChhHHHHHHHHHHHHH
Q 011759 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVS-HYGELALECVNAYYQYGRALL 119 (478)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~-~~Ge~~pe~A~~y~~YG~ALl 119 (478)
+..|..|+.+|...-..|+|++|..+|.++++.+.. +.++.+|..-+.+-.-=.-++
T Consensus 3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eYl 60 (75)
T cd02677 3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKIAEYL 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999998877 447888877666554333333
No 274
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.38 E-value=0.24 Score=51.66 Aligned_cols=52 Identities=19% Similarity=0.310 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011759 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (478)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (478)
-++.|.+...++.-++..|.|+.|+++|-.|+++ +|..|.+|-+-+.+++.+
T Consensus 110 ~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl 161 (377)
T KOG1308|consen 110 MMDQANDKKVQASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKL 161 (377)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeec
Confidence 3556889999999999999999999999999998 899999999999888876
No 275
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=87.25 E-value=54 Score=40.01 Aligned_cols=211 Identities=13% Similarity=0.008 Sum_probs=122.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc-----cCCCC
Q 011759 59 REKTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP-----LVSVP 133 (478)
Q Consensus 59 ~~~~l~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdv-----Lg~~~ 133 (478)
+-+..-......-.|..++-.|+|.+|...|.+|++++.. ..++.=.|.+|=.++.|++-++-...+. +...+
T Consensus 235 ~~~~r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~--~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~ 312 (1185)
T PF08626_consen 235 RSRKRCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKS--SNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLC 312 (1185)
T ss_pred ccchhhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhh--cCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccC
Confidence 4455556777888999999999999999999999999755 3345555666666665555443322211 00000
Q ss_pred CCcCCCCCCCCCccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHH
Q 011759 134 KKEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWK 213 (478)
Q Consensus 134 ~~~~e~~~~~~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE 213 (478)
.... ..+...+ ..... +.. .++... ...... ...+ -.-..-..+=-+
T Consensus 313 ~~~~----~~~~~s~-~~~~~--~~~--~sP~~s--~~~~~~--~~~~--------------------~~~~~l~~~i~~ 359 (1185)
T PF08626_consen 313 PISS----STSSSSP-RNSSS--SST--QSPRNS--VSSSSS--SNID--------------------VNLVNLPNLIPD 359 (1185)
T ss_pred CCCC----ccCccCc-ccCCc--cCC--CCCCcc--ccCCCc--cccc--------------------hhhccCHhhhhH
Confidence 0000 0000000 00000 000 000000 000000 0000 000111222335
Q ss_pred HHHHHHHHHHHhcCC------CchHHHHHHHHHHHHHhcC--------------------CHHHHHHHHHHHHHHHHHhc
Q 011759 214 MLDVARAIAEKHWGD------SMEKVDILSALAEVALERE--------------------DIETSLSDYQKALTILERMV 267 (478)
Q Consensus 214 ~Le~Ar~I~ek~l~~------~~~~Ad~~~~LGev~le~g--------------------~feeAl~dy~kAL~I~~~ll 267 (478)
+++.++..|.+.... .+=.+++...++.+..... .-.++..+..+++.+....+
T Consensus 360 ~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l 439 (1185)
T PF08626_consen 360 LYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL 439 (1185)
T ss_pred HHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC
Confidence 667788888887531 2335678888888888888 88999999999999998777
Q ss_pred CCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 011759 268 EPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK 306 (478)
Q Consensus 268 g~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k 306 (478)
+..++ ..+|..|+.+|...|-+.++.=+.+.++-.+-
T Consensus 440 ~~~dq--i~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~~ 476 (1185)
T PF08626_consen 440 SVEDQ--IRIYSGLASVYGSLGFHRKKAFVLRELAVQLV 476 (1185)
T ss_pred CHHHH--HHHHHHHHHHHHhcchhHHHHHHHHHHHHHhc
Confidence 54444 58899999999999988777777777666663
No 276
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=86.95 E-value=5.1 Score=32.93 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHH
Q 011759 275 AELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQR 311 (478)
Q Consensus 275 Aea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~rl~~ 311 (478)
|.-+...|.-+...|+|++|+.+|++||+.+...|..
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~ 42 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKG 42 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh
Confidence 5566777888899999999999999999988776554
No 277
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=86.91 E-value=12 Score=43.06 Aligned_cols=68 Identities=19% Similarity=0.155 Sum_probs=45.4
Q ss_pred CchHHHHHHHHHH------HHHhcCCHHHHHHHHHH------HHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHH
Q 011759 229 SMEKVDILSALAE------VALEREDIETSLSDYQK------ALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIP 296 (478)
Q Consensus 229 ~~~~Ad~~~~LGe------v~le~g~feeAl~dy~k------AL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~ 296 (478)
-..+|+-|.++|+ ++.+.+.|.+||.+|.+ |.++..+..+++.. ...|.--+.-+...|+|.+|..
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~e~t--~~~yiakaedldehgkf~eaeq 845 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGPEAT--ISLYIAKAEDLDEHGKFAEAEQ 845 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCchhH--HHHHHHhHHhHHhhcchhhhhh
Confidence 3567777777774 67788899999999865 56677777766643 3445555555666777755544
Q ss_pred HH
Q 011759 297 YC 298 (478)
Q Consensus 297 ~~ 298 (478)
.|
T Consensus 846 ly 847 (1636)
T KOG3616|consen 846 LY 847 (1636)
T ss_pred ee
Confidence 44
No 278
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.81 E-value=0.6 Score=30.06 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHH
Q 011759 276 ELNFRICLCLEIGSKPQEAIPYCQK 300 (478)
Q Consensus 276 ea~~~LG~ay~~~~~~eeAl~~~ek 300 (478)
.+++.||.+|...|++++|..++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 5789999999999999999998763
No 279
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=86.74 E-value=45 Score=35.14 Aligned_cols=96 Identities=17% Similarity=0.119 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HHHhcCCCChHHHHHHHHHHHHHHcCCCc--
Q 011759 215 LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTI-LERMVEPDSRHIAELNFRICLCLEIGSKP-- 291 (478)
Q Consensus 215 Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I-~~~llg~d~r~iAea~~~LG~ay~~~~~~-- 291 (478)
||.++.++.=.+.. +---+...|--..+..++|+-=+..++..+.. .+.. ...+...-|.+++||.+.++-
T Consensus 123 lE~~KlLlsLdp~~--DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~----~~~lPn~a~S~aLA~~~l~~~~~ 196 (360)
T PF04910_consen 123 LEWCKLLLSLDPDE--DPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNW----LSLLPNFAFSIALAYFRLEKEES 196 (360)
T ss_pred HHHHHHHHhcCCCC--CcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhh----hhhCccHHHHHHHHHHHhcCccc
Confidence 35566666544331 11224444555556778887777777765552 1110 001336678899999999888
Q ss_pred -------------hHHHHHHHHHHHHHHHHHHHHHHHH
Q 011759 292 -------------QEAIPYCQKAISVCKSRVQRLLNEV 316 (478)
Q Consensus 292 -------------eeAl~~~ekAL~I~k~rl~~l~~~l 316 (478)
+.|-...++||..+...+..|-+++
T Consensus 197 ~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~Ll~~l 234 (360)
T PF04910_consen 197 SQSSAQSGRSENSESADEALQKAILRFPWVLVPLLDKL 234 (360)
T ss_pred cccccccccccchhHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 8999999999999999999997777
No 280
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=86.70 E-value=45 Score=35.02 Aligned_cols=33 Identities=21% Similarity=0.069 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 011759 273 HIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (478)
Q Consensus 273 ~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~ 305 (478)
.-|.+||..|..+...++|.+||.+++.|...+
T Consensus 245 f~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l 277 (353)
T cd09246 245 FRAEALYRAAKDLHEKEDIGEEIARLRAASDAL 277 (353)
T ss_pred HHHHHHHHHHHHhHHhcchHHHHHHHHHHHHHH
Confidence 368889999999999999999999999998743
No 281
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=86.40 E-value=3.4 Score=41.71 Aligned_cols=82 Identities=15% Similarity=0.083 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchH
Q 011759 215 LDVARAIAEKHWGDSMEKVDILSALAEVALE-REDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQE 293 (478)
Q Consensus 215 Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le-~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~ee 293 (478)
++.||.+|.+......-.-.+|...|.+-.. .++.+.|...|+.+|+.... +..+-..| ..-+...++.+.
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~-----~~~~~~~Y---~~~l~~~~d~~~ 88 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS-----DPDFWLEY---LDFLIKLNDINN 88 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT------HHHHHHH---HHHHHHTT-HHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-----CHHHHHHH---HHHHHHhCcHHH
Confidence 4667777777765433456789999999666 67777799999999976542 33332222 244557789999
Q ss_pred HHHHHHHHHHH
Q 011759 294 AIPYCQKAISV 304 (478)
Q Consensus 294 Al~~~ekAL~I 304 (478)
|...|++++..
T Consensus 89 aR~lfer~i~~ 99 (280)
T PF05843_consen 89 ARALFERAISS 99 (280)
T ss_dssp HHHHHHHHCCT
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 282
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=86.36 E-value=2.3 Score=41.38 Aligned_cols=74 Identities=23% Similarity=0.182 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----------------------------HHHHhcCC-CChHHHHHHHHHHH
Q 011759 233 VDILSALAEVALEREDIETSLSDYQKALT----------------------------ILERMVEP-DSRHIAELNFRICL 283 (478)
Q Consensus 233 Ad~~~~LGev~le~g~feeAl~dy~kAL~----------------------------I~~~llg~-d~r~iAea~~~LG~ 283 (478)
..-+..||+...+.|+|.+|..+|+++|. ..+++..- ..++.+..+.-+|.
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR 168 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFAR 168 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHH
Confidence 34456677777777777777777776653 12222211 23445677888999
Q ss_pred HHHcCCCchHHHHHHHHHHHHHH
Q 011759 284 CLEIGSKPQEAIPYCQKAISVCK 306 (478)
Q Consensus 284 ay~~~~~~eeAl~~~ekAL~I~k 306 (478)
+|.-+|++.+|...|+.++..+.
T Consensus 169 ~laa~g~~a~Aesafe~a~~~yp 191 (251)
T COG4700 169 TLAAQGKYADAESAFEVAISYYP 191 (251)
T ss_pred HHHhcCCchhHHHHHHHHHHhCC
Confidence 99999999999999999998764
No 283
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=86.35 E-value=16 Score=32.76 Aligned_cols=75 Identities=24% Similarity=0.315 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHH
Q 011759 234 DILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLL 313 (478)
Q Consensus 234 d~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~rl~~l~ 313 (478)
..+..|..+.+..-+++.-+...++||.=+..+-. + +.+|...|.++.+. ..++++.-.+.-++.++.||..|+
T Consensus 17 qLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~e-D----~~vYk~VG~llvk~-~k~~~~~eL~er~E~Le~ri~tLe 90 (119)
T COG1382 17 QLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDE-D----APVYKKVGNLLVKV-SKEEAVDELEERKETLELRIKTLE 90 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-c----cHHHHHhhhHHhhh-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777778888888888887776642 2 37899999999988 667787777776666666666664
Q ss_pred H
Q 011759 314 N 314 (478)
Q Consensus 314 ~ 314 (478)
+
T Consensus 91 k 91 (119)
T COG1382 91 K 91 (119)
T ss_pred H
Confidence 4
No 284
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=86.27 E-value=45 Score=34.66 Aligned_cols=53 Identities=21% Similarity=0.114 Sum_probs=38.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQK 258 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~k 258 (478)
..|...--+|-.+..-|.+.+++......+|..+|+.+.+.+.....+.++-+
T Consensus 79 ~~ypq~e~~Lg~~mik~gkeLg~dSs~g~tl~~~Gesm~~i~evk~sl~~~vk 131 (366)
T KOG1118|consen 79 KGYPQTEGLLGDVMIKHGKELGDDSSFGHTLIDAGESMREIGEVKDSLDDNVK 131 (366)
T ss_pred CCCccchhHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666777778888887777788888888888888877777666543
No 285
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.06 E-value=0.84 Score=29.37 Aligned_cols=24 Identities=21% Similarity=0.109 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 011759 234 DILSALAEVALEREDIETSLSDYQ 257 (478)
Q Consensus 234 d~~~~LGev~le~g~feeAl~dy~ 257 (478)
.++.+||.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 478899999999999999998876
No 286
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=85.99 E-value=2.2 Score=49.19 Aligned_cols=76 Identities=20% Similarity=0.240 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHc
Q 011759 208 LDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEI 287 (478)
Q Consensus 208 le~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~ 287 (478)
|..=+-||+.|+.||.+- .-|..|-.+|+..|++.+|+ +|.+.. +.-++=.+||+.+.-++.
T Consensus 809 LAieLgMlEeA~~lYr~c--------kR~DLlNKlyQs~g~w~eA~-------eiAE~~---DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQC--------KRYDLLNKLYQSQGMWSEAF-------EIAETK---DRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred HHHHHhhHHHHHHHHHHH--------HHHHHHHHHHHhcccHHHHH-------HHHhhc---cceehhhhHHHHHHHHHh
Confidence 334445677777777653 24666666676666665554 344332 223356899999999999
Q ss_pred CCCchHHHHHHHHH
Q 011759 288 GSKPQEAIPYCQKA 301 (478)
Q Consensus 288 ~~~~eeAl~~~ekA 301 (478)
.++.+.|++||+|+
T Consensus 871 r~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKA 884 (1416)
T ss_pred hccHHHHHHHHHhc
Confidence 99999999999984
No 287
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.83 E-value=1.4 Score=46.46 Aligned_cols=83 Identities=20% Similarity=0.161 Sum_probs=60.3
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 285 (478)
.||.-|...|+.++..-+ .+--++-.-||-+++.+|+|++|+..|+-... +.. --++...+|+.|+
T Consensus 36 rDytGAislLefk~~~~~------EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~--~~~------~~~el~vnLAcc~ 101 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDR------EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN--KDD------APAELGVNLACCK 101 (557)
T ss_pred ccchhHHHHHHHhhccch------hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc--cCC------CCcccchhHHHHH
Confidence 467778777777763221 12234566688888999999999999986544 211 1268889999999
Q ss_pred HcCCCchHHHHHHHHHH
Q 011759 286 EIGSKPQEAIPYCQKAI 302 (478)
Q Consensus 286 ~~~~~~eeAl~~~ekAL 302 (478)
.++|.|.+|.....+|-
T Consensus 102 FyLg~Y~eA~~~~~ka~ 118 (557)
T KOG3785|consen 102 FYLGQYIEAKSIAEKAP 118 (557)
T ss_pred HHHHHHHHHHHHHhhCC
Confidence 99999999988777763
No 288
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.25 E-value=17 Score=37.24 Aligned_cols=85 Identities=19% Similarity=0.047 Sum_probs=66.5
Q ss_pred ChHHHHHHH-------HHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q 011759 206 SDLDLAWKM-------LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELN 278 (478)
Q Consensus 206 ddle~AwE~-------Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~ 278 (478)
..|..||=- +.-|.-||+...+..+..-.+++-++.+++.++||++|...++.||.=.-+. .+++
T Consensus 173 tQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d--------petL 244 (299)
T KOG3081|consen 173 TQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD--------PETL 244 (299)
T ss_pred HHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC--------HHHH
Confidence 456777733 3667888988877555667788999999999999999999999988754433 6899
Q ss_pred HHHHHHHHcCCCchHHHHHH
Q 011759 279 FRICLCLEIGSKPQEAIPYC 298 (478)
Q Consensus 279 ~~LG~ay~~~~~~eeAl~~~ 298 (478)
.|+=.+-...|+-.++..-|
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred HHHHHHHHHhCCChHHHHHH
Confidence 99999999999887765543
No 289
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=85.18 E-value=9.2 Score=39.91 Aligned_cols=37 Identities=24% Similarity=0.168 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHH
Q 011759 274 IAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQ 310 (478)
Q Consensus 274 iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~rl~ 310 (478)
.|.+||.+|..+...++|.+|+.+++.|...++....
T Consensus 238 ~A~A~y~~A~~~~~~~~~G~aia~L~~A~~~l~~a~~ 274 (377)
T PF03097_consen 238 RALAHYHQALAAEEAKKYGEAIARLRRAEEALKEASK 274 (377)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh
Confidence 6788999999999999999999999999987665543
No 290
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.88 E-value=29 Score=38.29 Aligned_cols=129 Identities=14% Similarity=0.063 Sum_probs=89.7
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCC---CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 011759 205 ESDLDLAWKMLDVARAIAEKHWGD---SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRI 281 (478)
Q Consensus 205 ~ddle~AwE~Le~Ar~I~ek~l~~---~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~L 281 (478)
-++++.|.+.+-..+..+.+.+.. .-..+.+|..||.-++..+.|+.|..+|..|+++-.+.- ..|.+..||
T Consensus 336 ~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~d-----l~a~~nlnl 410 (629)
T KOG2300|consen 336 RGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESID-----LQAFCNLNL 410 (629)
T ss_pred hCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHH-----HHHHHHHhH
Confidence 366777777777777777777652 223588999999999999999999999999999887542 368888899
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccccccccccccccccchhhhHHHHHHHHHHhh
Q 011759 282 CLCLEIGSKPQEAIPYCQKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGL 361 (478)
Q Consensus 282 G~ay~~~~~~eeAl~~~ekAL~I~k~rl~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Ei~elk~l 361 (478)
+..|...++-+ .+| +.++......+.+ -+...+++-|.-+.+|
T Consensus 411 Ai~YL~~~~~e---d~y---------------~~ld~i~p~nt~s-------------------~ssq~l~a~~~~v~gl 453 (629)
T KOG2300|consen 411 AISYLRIGDAE---DLY---------------KALDLIGPLNTNS-------------------LSSQRLEASILYVYGL 453 (629)
T ss_pred HHHHHHhccHH---HHH---------------HHHHhcCCCCCCc-------------------chHHHHHHHHHHHHHH
Confidence 99998866532 222 2222222110000 1124667788888888
Q ss_pred HHHHHHHHHHHHHh
Q 011759 362 CGDLEKKLEDLQQV 375 (478)
Q Consensus 362 l~dl~~KieDlk~~ 375 (478)
..=++-++.+.|..
T Consensus 454 faf~qn~lnEaK~~ 467 (629)
T KOG2300|consen 454 FAFKQNDLNEAKRF 467 (629)
T ss_pred HHHHhccHHHHHHH
Confidence 88888888877753
No 291
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=84.56 E-value=59 Score=34.52 Aligned_cols=114 Identities=22% Similarity=0.216 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHHHHHhc----C----C-CChHHHHHHHHH
Q 011759 231 EKVDILSALAEVALERED--------------------IETSLSDYQKALTILERMV----E----P-DSRHIAELNFRI 281 (478)
Q Consensus 231 ~~Ad~~~~LGev~le~g~--------------------feeAl~dy~kAL~I~~~ll----g----~-d~r~iAea~~~L 281 (478)
++|.+|..|-++.+...+ -..||.+|+.-+...+.-- + . +-+.+-.+||.+
T Consensus 227 Elae~~~~i~dlk~~~~~~~~~~~~~~~~~~~~kin~l~~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~~~l~a~f~~ 306 (371)
T PF12309_consen 227 ELAEIYSEIMDLKLEKLDEPQNDNEPPDDHALKKINQLCSKAIKYYQKFLDSYKSPDSGKLPEKLDEDELRPYLYAYFHI 306 (371)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCcHHHHHHHHHHHHHH
Confidence 456666666666655544 3578899999888877321 1 1 245678899999
Q ss_pred HHHHHcC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccccccccccccccccchhhhHHHHHHHHHH
Q 011759 282 CLCLEIG--SKPQEAIPYCQKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLS 359 (478)
Q Consensus 282 G~ay~~~--~~~eeAl~~~ekAL~I~k~rl~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Ei~elk 359 (478)
|.+|... ++..+=+++++++|..++..+.-...--. .....+.|++=-+
T Consensus 307 arl~~K~~~~~~~~~~~~l~~sl~~y~~vv~y~~~~~~-----------------------------~~~~~~~El~l~~ 357 (371)
T PF12309_consen 307 ARLYSKLITSDPKEQLENLEKSLEYYKWVVDYCEKHPE-----------------------------AAEEFEEELELCR 357 (371)
T ss_pred HHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHhChh-----------------------------hHHHHHHHHHHHH
Confidence 9999876 45555555555555555555443311000 0113367787788
Q ss_pred hhHHHHHHHHHHHH
Q 011759 360 GLCGDLEKKLEDLQ 373 (478)
Q Consensus 360 ~ll~dl~~KieDlk 373 (478)
+++.=|-.||..|+
T Consensus 358 EM~~LLP~Ki~~l~ 371 (371)
T PF12309_consen 358 EMVQLLPLKINRLK 371 (371)
T ss_pred HHHHHHHHHHHhcC
Confidence 88888888888764
No 292
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=84.52 E-value=8.5 Score=31.71 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh-CCCChhHHHHH
Q 011759 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHY-GELALECVNAY 111 (478)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~-Ge~~pe~A~~y 111 (478)
+.|..+..++..+-..|+|.+|+.||++|.+++.+.. +.........|
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~y 52 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIY 52 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHH
Confidence 3488899999999999999999999999999887765 33333333333
No 293
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.07 E-value=1.7 Score=48.76 Aligned_cols=68 Identities=19% Similarity=0.151 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 011759 236 LSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (478)
Q Consensus 236 ~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~ 305 (478)
+-+-|.-+++..+|..+++.|..+|..... ...++..|...-+|+.||..+.+.+.|+++|+.|-+.-
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~--D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d 424 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIIS--DNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD 424 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccc--hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Confidence 335577788999999999999999876543 23477789999999999999999999999999987654
No 294
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.00 E-value=3.5 Score=41.64 Aligned_cols=88 Identities=18% Similarity=0.310 Sum_probs=69.0
Q ss_pred chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC----------ChHHHHHHHHHHHHHHcCCCchHHHHHHH
Q 011759 230 MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPD----------SRHIAELNFRICLCLEIGSKPQEAIPYCQ 299 (478)
Q Consensus 230 ~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d----------~r~iAea~~~LG~ay~~~~~~eeAl~~~e 299 (478)
+....++.--|+-++..|+|.+|...|+.|+-+.+.+.-.+ .+.+...|.|.+.||...++|=++++|+.
T Consensus 175 mkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~s 254 (329)
T KOG0545|consen 175 MKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCS 254 (329)
T ss_pred hhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHH
Confidence 44566777889999999999999999999999988774322 35677789999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011759 300 KAISVCKSRVQRLLNEVK 317 (478)
Q Consensus 300 kAL~I~k~rl~~l~~~l~ 317 (478)
..|.........+-..-+
T Consensus 255 eiL~~~~~nvKA~frRak 272 (329)
T KOG0545|consen 255 EILRHHPGNVKAYFRRAK 272 (329)
T ss_pred HHHhcCCchHHHHHHHHH
Confidence 877765554444444333
No 295
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=83.89 E-value=33 Score=39.66 Aligned_cols=73 Identities=16% Similarity=0.123 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHH------HHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 011759 232 KVDILSALAEVALEREDIETSLSDYQ------KALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (478)
Q Consensus 232 ~Ad~~~~LGev~le~g~feeAl~dy~------kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~ 305 (478)
..+.|..-|+++-...+|+.|+++|+ +|+++.+-.+|..-. ..--..|.-+.+.|+++.|+.||-.|--+.
T Consensus 660 k~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv---~lee~wg~hl~~~~q~daainhfiea~~~~ 736 (1636)
T KOG3616|consen 660 KGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVV---KLEEAWGDHLEQIGQLDAAINHFIEANCLI 736 (1636)
T ss_pred hhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHh---hHHHHHhHHHHHHHhHHHHHHHHHHhhhHH
Confidence 35678999999999999999999987 467777766664433 333446888999999999999998876655
Q ss_pred HH
Q 011759 306 KS 307 (478)
Q Consensus 306 k~ 307 (478)
++
T Consensus 737 ka 738 (1636)
T KOG3616|consen 737 KA 738 (1636)
T ss_pred HH
Confidence 54
No 296
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=83.88 E-value=47 Score=35.22 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 011759 63 VEFADELMEKGTNALKESDYGEAAECFSRALEI 95 (478)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei 95 (478)
...+.....++..+|..++|..|...|.+.+..
T Consensus 128 ~~~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~r 160 (379)
T PF09670_consen 128 EVFGDREWRRAKELFNRYDYGAAARILEELLRR 160 (379)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 345677788999999999999999999998874
No 297
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=83.74 E-value=13 Score=37.06 Aligned_cols=113 Identities=19% Similarity=0.095 Sum_probs=71.7
Q ss_pred CcChHHHHHHHHHHHHHHHHHhcCC-----CchHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q 011759 204 DESDLDLAWKMLDVARAIAEKHWGD-----SMEKVDILSALAEVALERED-IETSLSDYQKALTILERMVEPDSRHIAEL 277 (478)
Q Consensus 204 d~ddle~AwE~Le~Ar~I~ek~l~~-----~~~~Ad~~~~LGev~le~g~-feeAl~dy~kAL~I~~~llg~d~r~iAea 277 (478)
|.++|+.|+++.+.|+.--...++. .--+++-...-+......|+ |+-+ .++....|... ..-.+...|..
T Consensus 95 D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~--~~~~~~~l~~~-~dmpd~vrAKl 171 (230)
T PHA02537 95 DIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPY--FLRVFLDLTTE-WDMPDEVRAKL 171 (230)
T ss_pred eccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChH--HHHHHHHHHhc-CCCChHHHHHH
Confidence 4689999988877776432222221 11256666666777777776 2222 23333344322 22234556777
Q ss_pred HHHHHHHHH---------cCCCchHHHHHHHHHHHH-----HHHHHHHHHHHHHhh
Q 011759 278 NFRICLCLE---------IGSKPQEAIPYCQKAISV-----CKSRVQRLLNEVKSL 319 (478)
Q Consensus 278 ~~~LG~ay~---------~~~~~eeAl~~~ekAL~I-----~k~rl~~l~~~l~~~ 319 (478)
|--+|.++. ..+++..|+.+|++|+.+ .+..|++|+..|+.+
T Consensus 172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~~i~~l~~~lr~~ 227 (230)
T PHA02537 172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKKDIERLERRLKAL 227 (230)
T ss_pred HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhc
Confidence 888999883 456788999999999998 566788888777654
No 298
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.73 E-value=10 Score=36.98 Aligned_cols=87 Identities=23% Similarity=0.096 Sum_probs=59.6
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 285 (478)
++|+.|...|.-++.- ..+..-.+-+-.+||.|.+..++|++|+..+. ..- ++--.+....-.|.+|
T Consensus 103 ~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~-------t~~--~~~w~~~~~elrGDil 169 (207)
T COG2976 103 NNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLD-------TIK--EESWAAIVAELRGDIL 169 (207)
T ss_pred ccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-------ccc--cccHHHHHHHHhhhHH
Confidence 5666666555544311 01111234567799999999999998875543 332 2323455566789999
Q ss_pred HcCCCchHHHHHHHHHHHHH
Q 011759 286 EIGSKPQEAIPYCQKAISVC 305 (478)
Q Consensus 286 ~~~~~~eeAl~~~ekAL~I~ 305 (478)
...|+-++|+..|++|+.+.
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 170 LAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHcCchHHHHHHHHHHHHcc
Confidence 99999999999999999884
No 299
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.59 E-value=82 Score=35.37 Aligned_cols=154 Identities=16% Similarity=0.117 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCC
Q 011759 63 VEFADELMEKGTNAL-KESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQ 141 (478)
Q Consensus 63 l~~A~~L~~~G~~~~-~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~ 141 (478)
..+|...+.+|..++ ...+++.|..+++++..+... ...-..-..+.+.+.++++..
T Consensus 56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~~~d~k~~~~~ll~~i~~~~-------------------- 113 (608)
T PF10345_consen 56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCER--HRLTDLKFRCQFLLARIYFKT-------------------- 113 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHhc--------------------
Confidence 456888889998888 678999999999999888655 222222334444444544432
Q ss_pred CCCCccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHH
Q 011759 142 GSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAI 221 (478)
Q Consensus 142 ~~~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I 221 (478)
+...|...++.++..
T Consensus 114 -----------------------------------------------------------------~~~~a~~~l~~~I~~ 128 (608)
T PF10345_consen 114 -----------------------------------------------------------------NPKAALKNLDKAIED 128 (608)
T ss_pred -----------------------------------------------------------------CHHHHHHHHHHHHHH
Confidence 111166777777776
Q ss_pred HHHhcCCCchHHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 011759 222 AEKHWGDSMEKVDILSAL-AEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 300 (478)
Q Consensus 222 ~ek~l~~~~~~Ad~~~~L-Gev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ek 300 (478)
++.... .....++..| ...++..+++..|+..+++...+..... +.-...-+.+-.++++.+.+..+++++..++
T Consensus 129 ~~~~~~--~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~--d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~ 204 (608)
T PF10345_consen 129 SETYGH--SAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRG--DPAVFVLASLSEALLHLRRGSPDDVLELLQR 204 (608)
T ss_pred HhccCc--hhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcC--CHHHHHHHHHHHHHHHhcCCCchhHHHHHHH
Confidence 665321 1233344444 4444444899999999999988877432 2222344455567777888888999999999
Q ss_pred HHHHHHH
Q 011759 301 AISVCKS 307 (478)
Q Consensus 301 AL~I~k~ 307 (478)
++.....
T Consensus 205 ~~~~~~~ 211 (608)
T PF10345_consen 205 AIAQARS 211 (608)
T ss_pred HHHHHhh
Confidence 8776554
No 300
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=83.55 E-value=24 Score=35.93 Aligned_cols=137 Identities=16% Similarity=0.177 Sum_probs=75.1
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCC----C---ch-HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCChH
Q 011759 205 ESDLDLAWKMLDVARAIAEKHWGD----S---ME-KVDILSALAEVALERED---IETSLSDYQKALTILERMVEPDSRH 273 (478)
Q Consensus 205 ~ddle~AwE~Le~Ar~I~ek~l~~----~---~~-~Ad~~~~LGev~le~g~---feeAl~dy~kAL~I~~~llg~d~r~ 273 (478)
++.|+.=-....+.+.||.||.+- . .. ....+..|..|-.++.+ .+-.-.++..++.+...+-
T Consensus 89 VngY~Vk~S~~silq~If~KHGDIAsNc~lkS~~~RS~yLe~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLe------ 162 (269)
T PF05278_consen 89 VNGYQVKPSQVSILQKIFEKHGDIASNCKLKSQQFRSYYLECLCDIIQELQSTPLKELSESDLKEMIATLKDLE------ 162 (269)
T ss_pred ECCEEEcHhHHHHHHHHHHhCccHhhccccCcHHHHHHHHHHHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHH------
Confidence 566666566778889999999761 1 11 12223334444333332 2334455666666665542
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHH------HHHHHHHHHHHHHHHHHhhccCCCCCCCccccccccccccccccchh
Q 011759 274 IAELNFRICLCLEIGSKPQEAIPYCQK------AISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKL 347 (478)
Q Consensus 274 iAea~~~LG~ay~~~~~~eeAl~~~ek------AL~I~k~rl~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 347 (478)
.+-+++++.......+-+|.++|.+ -.+.+++.|...+.+++... .+
T Consensus 163 --sa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~-------------------------Ee 215 (269)
T PF05278_consen 163 --SAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELE-------------------------EE 215 (269)
T ss_pred --HcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HH
Confidence 3334444444444444455555443 22223344444444444332 23
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHH
Q 011759 348 LTDKEAEIETLSGLCGDLEKKLEDLQQ 374 (478)
Q Consensus 348 ~~~~~~Ei~elk~ll~dl~~KieDlk~ 374 (478)
....++++++++.=+.++..||.+|+.
T Consensus 216 L~~~Eke~~e~~~~i~e~~~rl~~l~~ 242 (269)
T PF05278_consen 216 LKQKEKEVKEIKERITEMKGRLGELEM 242 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888875
No 301
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=83.41 E-value=24 Score=31.23 Aligned_cols=46 Identities=15% Similarity=0.007 Sum_probs=35.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhh
Q 011759 72 KGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKA 122 (478)
Q Consensus 72 ~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a 122 (478)
++..++..||+-+|.++....+.. ||+... +..+++.=|.+++.++
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~----h~~~~~-~~~lh~~QG~if~~lA 47 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISR----HGEDES-SWLLHRLQGTIFYKLA 47 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHH----ccCCCc-hHHHHHHHhHHHHHHH
Confidence 467789999999999988887765 665433 3378888899998884
No 302
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=82.79 E-value=7 Score=36.08 Aligned_cols=70 Identities=14% Similarity=0.139 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 011759 232 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSR-HIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (478)
Q Consensus 232 ~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r-~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~ 305 (478)
..++.++|+.+.....+- .+-++-+.|++.++...|| .-=++.|.|++.|.+.++|+.++.|+...|+.-
T Consensus 31 s~~s~f~lAwaLV~S~~~----~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDT----EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred hHHHHHHHHHHHHcccch----HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 467889999988887764 4567788888888852222 123899999999999999999999999888764
No 303
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=81.83 E-value=10 Score=30.48 Aligned_cols=35 Identities=20% Similarity=0.133 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHH
Q 011759 275 AELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRV 309 (478)
Q Consensus 275 Aea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~rl 309 (478)
|..+...|+.+...|++++|+.+|.+|++.+..-+
T Consensus 8 A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~ 42 (77)
T smart00745 8 AKELISKALKADEAGDYEEALELYKKAIEYLLEGI 42 (77)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 44455667788889999999999999999876643
No 304
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=81.53 E-value=12 Score=30.29 Aligned_cols=37 Identities=14% Similarity=0.055 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHH
Q 011759 275 AELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQR 311 (478)
Q Consensus 275 Aea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~rl~~ 311 (478)
|.-+.+-|+-....|+|++|+.+|.+|++.+..-+..
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~ 42 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKY 42 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566677788999999999999999987766543
No 305
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=81.40 E-value=2.8 Score=34.80 Aligned_cols=36 Identities=11% Similarity=0.025 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Q 011759 273 HIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSR 308 (478)
Q Consensus 273 ~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~r 308 (478)
..|..+.+.|+.+.-.|+.++|+.+|++++.++..-
T Consensus 6 ~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg 41 (79)
T cd02679 6 KQAFEEISKALRADEWGDKEQALAHYRKGLRELEEG 41 (79)
T ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHH
Confidence 456777788888998999999999999999876544
No 306
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=81.29 E-value=2.4 Score=43.31 Aligned_cols=69 Identities=14% Similarity=0.094 Sum_probs=44.6
Q ss_pred HHHHHhcC--CHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 011759 240 AEVALERE--DIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLLNEV 316 (478)
Q Consensus 240 Gev~le~g--~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~rl~~l~~~l 316 (478)
+.|.+..| +|.+|.-.|+.... .+| ....+++.++.|+..+|+|++|...+++|+..-...-..|-|.+
T Consensus 172 awv~l~~g~e~~~~A~y~f~El~~----~~~----~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNli 242 (290)
T PF04733_consen 172 AWVNLATGGEKYQDAFYIFEELSD----KFG----STPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLI 242 (290)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHC----CS------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHH
T ss_pred HHHHHHhCchhHHHHHHHHHHHHh----ccC----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 33444444 67777777776321 122 23466889999999999999999999998876555555554443
No 307
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=80.81 E-value=11 Score=30.16 Aligned_cols=34 Identities=9% Similarity=0.068 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHH
Q 011759 276 ELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRV 309 (478)
Q Consensus 276 ea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~rl 309 (478)
.-+.+.|+-+...|+|++|+.+|..|++.+..-+
T Consensus 7 ~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~ 40 (75)
T cd02656 7 KELIKQAVKEDEDGNYEEALELYKEALDYLLQAL 40 (75)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 3445566777888999999999999999876654
No 308
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=80.74 E-value=62 Score=32.02 Aligned_cols=63 Identities=16% Similarity=0.215 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCC---------------Cch
Q 011759 232 KVDILSALAEVALE----REDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGS---------------KPQ 292 (478)
Q Consensus 232 ~Ad~~~~LGev~le----~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~---------------~~e 292 (478)
..++..+||.+|.. .-++.+|+..|.+|-+.-. ...+|+++ ++...| +..
T Consensus 186 ~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~----------~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~ 254 (292)
T COG0790 186 NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD----------GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKK 254 (292)
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC----------HHHHHHHH-HHHhcCCCchhhhhcccccCCCHH
Confidence 56788999988865 3478888888888865432 57889999 555555 566
Q ss_pred HHHHHHHHHHHHH
Q 011759 293 EAIPYCQKAISVC 305 (478)
Q Consensus 293 eAl~~~ekAL~I~ 305 (478)
.|+..|.++....
T Consensus 255 ~a~~~~~~~~~~~ 267 (292)
T COG0790 255 QALEWLQKACELG 267 (292)
T ss_pred HHHHHHHHHHHcC
Confidence 7777777765543
No 309
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.25 E-value=0.49 Score=49.34 Aligned_cols=72 Identities=14% Similarity=-0.068 Sum_probs=61.7
Q ss_pred hcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 011759 225 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 225 ~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I 304 (478)
.....+..|..|..-|.|++++.+...||.+|..|+.|-... |.-|-..|.+...++++.+|...+..|+.+
T Consensus 140 ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds--------a~~ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 140 AIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS--------AKGYKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred ccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc--------ccccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 333457789999999999999999999999999999886543 677778899999999999999999998866
No 310
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=79.90 E-value=54 Score=38.46 Aligned_cols=70 Identities=7% Similarity=-0.052 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 011759 233 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK 306 (478)
Q Consensus 233 Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k 306 (478)
..++..+...|+. ++.+.....+.+.+.....+..+-. --+++.|+.++...|++++|..........+.
T Consensus 580 ~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~-~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 580 VRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLS-RLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred HHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 3445555555544 8888888888888887665433222 22337999999999999999888777665543
No 311
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.77 E-value=10 Score=38.54 Aligned_cols=90 Identities=10% Similarity=-0.074 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 011759 207 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 286 (478)
Q Consensus 207 dle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~ 286 (478)
-+=.|-++++-|..+|++.+.+.+--.-+|-.-=-+..-+|+--+||..+-.-|+++..- .+++..|+-.|.
T Consensus 94 m~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D--------~EAW~eLaeiY~ 165 (289)
T KOG3060|consen 94 MLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND--------QEAWHELAEIYL 165 (289)
T ss_pred HHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc--------HHHHHHHHHHHH
Confidence 344566777888888888877655545555555556677788888988887777766432 389999999999
Q ss_pred cCCCchHHHHHHHHHHHH
Q 011759 287 IGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 287 ~~~~~eeAl~~~ekAL~I 304 (478)
..++|++|+=||+..+=+
T Consensus 166 ~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 166 SEGDFEKAAFCLEELLLI 183 (289)
T ss_pred hHhHHHHHHHHHHHHHHc
Confidence 999999999999987754
No 312
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=79.39 E-value=38 Score=33.53 Aligned_cols=85 Identities=22% Similarity=0.187 Sum_probs=57.2
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALERE-------DIETSLSDYQKALTILERMVEPDSRHIAELN 278 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g-------~feeAl~dy~kAL~I~~~llg~d~r~iAea~ 278 (478)
.|+..|...|..|-.. ++. .-+.+..+||..|..-. ++..|+..|.++-... ...+.
T Consensus 127 ~d~~~A~~~~~~Aa~~-----g~~-~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~----------~~~a~ 190 (292)
T COG0790 127 LDLVKALKYYEKAAKL-----GNV-EAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG----------NPDAQ 190 (292)
T ss_pred cCHHHHHHHHHHHHHc-----CCh-hHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc----------CHHHH
Confidence 4677777777766432 111 11455888888888763 2235666666665544 35889
Q ss_pred HHHHHHHHcC----CCchHHHHHHHHHHHHHH
Q 011759 279 FRICLCLEIG----SKPQEAIPYCQKAISVCK 306 (478)
Q Consensus 279 ~~LG~ay~~~----~~~eeAl~~~ekAL~I~k 306 (478)
++||.+|... .++.+|+..|++|-+.-.
T Consensus 191 ~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 191 LLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999999764 378999999999987543
No 313
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=79.24 E-value=27 Score=28.73 Aligned_cols=33 Identities=15% Similarity=0.082 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 011759 233 VDILSALAEVALEREDIETSLSDYQKALTILER 265 (478)
Q Consensus 233 Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~ 265 (478)
|--+...|.-.-..|+|++|+.+|+.+++.+..
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 445556666667789999999999999998876
No 314
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=77.49 E-value=3.6 Score=36.06 Aligned_cols=80 Identities=16% Similarity=0.322 Sum_probs=50.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh------------------HHHHHHHHHHHHHHcCCCchHHHHHHH
Q 011759 238 ALAEVALEREDIETSLSDYQKALTILERMVEPDSR------------------HIAELNFRICLCLEIGSKPQEAIPYCQ 299 (478)
Q Consensus 238 ~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r------------------~iAea~~~LG~ay~~~~~~eeAl~~~e 299 (478)
.|..+.....++...+..|+.++.....+-..... ..-.++..||.=|.....+++|+.+++
T Consensus 14 ~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ve~~~~eA~~~l~ 93 (129)
T cd00890 14 QLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYVEKSLEEAIEFLK 93 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEEEecHHHHHHHHH
Confidence 34444455566777778888887777776432111 122456777755555667788888888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011759 300 KAISVCKSRVQRLLNEVK 317 (478)
Q Consensus 300 kAL~I~k~rl~~l~~~l~ 317 (478)
+-++.++.++..+++.+.
T Consensus 94 ~r~~~l~~~~~~l~~~~~ 111 (129)
T cd00890 94 KRLETLEKQIEKLEKQLE 111 (129)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 877777777776655443
No 315
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=77.49 E-value=4 Score=40.00 Aligned_cols=59 Identities=15% Similarity=0.197 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH---HHHHHHHHHHHHh
Q 011759 252 SLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC---KSRVQRLLNEVKS 318 (478)
Q Consensus 252 Al~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~---k~rl~~l~~~l~~ 318 (478)
|+.+|.+|+.+.... ...|++||+.+...+++=.|+-||-|++-+. ..-..+|..-++.
T Consensus 1 A~~~Y~~A~~l~P~~--------G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSN--------GNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTB--------SHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCC--------CCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 788999999999776 4899999999999999999999999998653 2334455554544
No 316
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=77.44 E-value=19 Score=38.02 Aligned_cols=98 Identities=20% Similarity=0.201 Sum_probs=71.8
Q ss_pred ChHHHHHHHHHHHHHHHHH-----hcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh----c---------
Q 011759 206 SDLDLAWKMLDVARAIAEK-----HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERM----V--------- 267 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek-----~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~l----l--------- 267 (478)
..++.+...|..+...+.- .+..+|.+++++..|++|+..+|++..|....++||-+.+.. +
T Consensus 8 ~~Y~~~q~~F~~~v~~~Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~ 87 (360)
T PF04910_consen 8 KAYQEAQEQFYAAVQSHDPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTS 87 (360)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence 4566666666666554311 112357789999999999999999999999999999988843 2
Q ss_pred --------CCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 011759 268 --------EPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 303 (478)
Q Consensus 268 --------g~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~ 303 (478)
-+++|.+=.++|+....+.+.|-+.-|+++++--+.
T Consensus 88 g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLls 131 (360)
T PF04910_consen 88 GNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLS 131 (360)
T ss_pred CccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 123677777788888888888887777776655443
No 317
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=76.77 E-value=6.6 Score=27.63 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH--HHHHH
Q 011759 67 DELMEKGTNALKESDYGEAAECFS--RALEI 95 (478)
Q Consensus 67 ~~L~~~G~~~~~~gdy~eAve~ys--~Alei 95 (478)
+.+...|..++.+|+|++|++.|+ -++.+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~l 32 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCAL 32 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 457889999999999999999966 66655
No 318
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=76.63 E-value=1.8 Score=47.05 Aligned_cols=73 Identities=16% Similarity=0.123 Sum_probs=63.1
Q ss_pred HHHHHHHHHhcC-CCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcC
Q 011759 216 DVARAIAEKHWG-DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIG 288 (478)
Q Consensus 216 e~Ar~I~ek~l~-~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~ 288 (478)
-.|+.|.++.++ .++++.....--|-+|..+|+|+.-|...+-||.++++++.|-+|.++.++...+-.+.+.
T Consensus 319 mqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~m 392 (615)
T KOG0508|consen 319 MQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSFM 392 (615)
T ss_pred HHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHH
Confidence 357888888887 4677766666789999999999999999999999999999999999999998888777653
No 319
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=76.29 E-value=49 Score=28.39 Aligned_cols=67 Identities=25% Similarity=0.335 Sum_probs=39.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHH
Q 011759 241 EVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLL 313 (478)
Q Consensus 241 ev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~rl~~l~ 313 (478)
.+......++.-+..++.++.=...+- ++ ..+|+.+|.+|.. -..++|+...+.-++.+..++..++
T Consensus 17 ~l~~~~~~l~~~~~E~~~v~~EL~~l~-~d----~~vy~~VG~vfv~-~~~~ea~~~Le~~~e~le~~i~~l~ 83 (105)
T cd00632 17 AYIVQRQKVEAQLNENKKALEELEKLA-DD----AEVYKLVGNVLVK-QEKEEARTELKERLETIELRIKRLE 83 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC-Cc----chHHHHhhhHHhh-ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555444432 22 3789999999876 4556777776666655555555543
No 320
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=76.28 E-value=27 Score=35.20 Aligned_cols=90 Identities=9% Similarity=0.063 Sum_probs=54.6
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 285 (478)
+|...|+.+||+++..|-.. .+.+..-.+..+..++.+.|...|++|+.. ++.+. ..-.+|...-.--
T Consensus 50 ~d~~~A~~Ife~glk~f~~~-------~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~----l~~~~-~~~~iw~~~i~fE 117 (280)
T PF05843_consen 50 KDPKRARKIFERGLKKFPSD-------PDFWLEYLDFLIKLNDINNARALFERAISS----LPKEK-QSKKIWKKFIEFE 117 (280)
T ss_dssp S-HHHHHHHHHHHHHHHTT--------HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT----SSCHH-HCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHhCcHHHHHHHHHHHHHh----cCchh-HHHHHHHHHHHHH
Confidence 45667888888888765432 344555557778899999999999999876 22111 0112233332223
Q ss_pred HcCCCchHHHHHHHHHHHHHHH
Q 011759 286 EIGSKPQEAIPYCQKAISVCKS 307 (478)
Q Consensus 286 ~~~~~~eeAl~~~ekAL~I~k~ 307 (478)
...|+++.....++++.+++..
T Consensus 118 ~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 118 SKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHcCCHHHHHHHHHHHHHHhhh
Confidence 3446888788888887777654
No 321
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=76.01 E-value=9.6 Score=33.75 Aligned_cols=94 Identities=13% Similarity=0.060 Sum_probs=51.7
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALER----EDIETSLSDYQKALTILERMVEPDSRHIAELNFRI 281 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~----g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~L 281 (478)
+|.-.|+++++..+....+.. ...-.|...|.|+..+ ++.+-=..++..+++-..+...- +|.-|..+|.|
T Consensus 10 GnhiKAL~iied~i~~h~~~~----~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L-sp~~A~~L~~l 84 (111)
T PF04781_consen 10 GNHIKALEIIEDLISRHGEDE----SSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL-SPDSAHSLFEL 84 (111)
T ss_pred cCHHHHHHHHHHHHHHccCCC----chHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc-ChhHHHHHHHH
Confidence 567778777776655443322 2235566666666443 34444444555555544443211 23338999999
Q ss_pred HHHHHcCCCchHHHHHHHHHHHH
Q 011759 282 CLCLEIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 282 G~ay~~~~~~eeAl~~~ekAL~I 304 (478)
|.=+....-|++++.-.+++|.|
T Consensus 85 a~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 85 ASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcc
Confidence 98775555555555555555543
No 322
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=75.43 E-value=19 Score=36.85 Aligned_cols=66 Identities=11% Similarity=0.124 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 011759 231 EKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 231 ~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I 304 (478)
....+|..|++.+...++|+.++.++++-+.+..-. =..|..|=.+|...|+...|+.+|++.-..
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~--------E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYD--------EPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccc--------hHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 368899999999999999999999998877665433 377889999999999999999999885543
No 323
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.63 E-value=32 Score=35.34 Aligned_cols=65 Identities=18% Similarity=0.174 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 011759 232 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 232 ~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I 304 (478)
..-++.+.+-||+-..+|..|...|.+++... ++.+.+.++-++|+.+.|+..+|++.++.++.+
T Consensus 251 ~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D--------~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 251 KIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD--------PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hHHHHhhhhhheecccchHHHHHHHhhccccC--------CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45689999999999999999999999887543 334677889999999999999999988877755
No 324
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=74.50 E-value=20 Score=29.54 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=22.3
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHH
Q 011759 280 RICLCLEIGSKPQEAIPYCQKAISVCKS 307 (478)
Q Consensus 280 ~LG~ay~~~~~~eeAl~~~ekAL~I~k~ 307 (478)
+-|+--...|+|++|+..|..||+.|..
T Consensus 11 ~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 11 TQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 3344455678999999999999998876
No 325
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=74.32 E-value=5.9 Score=44.29 Aligned_cols=63 Identities=13% Similarity=-0.020 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 011759 235 ILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (478)
Q Consensus 235 ~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~ 305 (478)
...+|+.+.+..+-..+|-..+.++|.|.-. - ...||.+|.+|..+.+.+.||++|+.|+..-
T Consensus 644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~~s-e-------pl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 644 PLVNLANLLIHYGLHLDATKLLLQALAINSS-E-------PLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred cHHHHHHHHHHhhhhccHHHHHHHHHhhccc-C-------chHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 4668888888888888999999999888721 1 2679999999999999999999999999753
No 326
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=74.20 E-value=44 Score=35.79 Aligned_cols=34 Identities=15% Similarity=0.093 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 011759 232 KVDILSALAEVALEREDIETSLSDYQKALTILER 265 (478)
Q Consensus 232 ~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~ 265 (478)
-+..|.-||.++-..|+...|-..++.+|.+...
T Consensus 360 s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~ 393 (400)
T COG3071 360 SASDYAELADALDQLGEPEEAEQVRREALLLTRQ 393 (400)
T ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcC
Confidence 3678999999999999999999999999965544
No 327
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=73.62 E-value=7.3 Score=30.27 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=21.7
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHH
Q 011759 347 LLTDKEAEIETLSGLCGDLEKKLEDLQQ 374 (478)
Q Consensus 347 ~~~~~~~Ei~elk~ll~dl~~KieDlk~ 374 (478)
.+..+++|+++|+.-+.+|++.+.||-.
T Consensus 15 ~i~tvk~en~~i~~~ve~i~envk~ll~ 42 (55)
T PF05377_consen 15 SINTVKKENEEISESVEKIEENVKDLLS 42 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888888888888877654
No 328
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=72.97 E-value=7.5 Score=29.75 Aligned_cols=32 Identities=22% Similarity=0.065 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 011759 234 DILSALAEVALEREDIETSLSDYQKALTILER 265 (478)
Q Consensus 234 d~~~~LGev~le~g~feeAl~dy~kAL~I~~~ 265 (478)
+|+..||..+..+|+|+.|..+.+.+|++.+.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 57889999999999999999999999998753
No 329
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=72.78 E-value=26 Score=36.23 Aligned_cols=87 Identities=20% Similarity=0.174 Sum_probs=59.3
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHH---------------HHHHHHHhc--
Q 011759 205 ESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQK---------------ALTILERMV-- 267 (478)
Q Consensus 205 ~ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~k---------------AL~I~~~ll-- 267 (478)
.+++..|...|..++... ++..++...|++++++.|+++.|...|.. -|++..+.-
T Consensus 147 ~e~~~~a~~~~~~al~~~-------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 147 AEDFGEAAPLLKQALQAA-------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred ccchhhHHHHHHHHHHhC-------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 456666766666666543 23467888899999999999877765543 244444332
Q ss_pred CC---------CChHHHHHHHHHHHHHHcCCCchHHHHHH
Q 011759 268 EP---------DSRHIAELNFRICLCLEIGSKPQEAIPYC 298 (478)
Q Consensus 268 g~---------d~r~iAea~~~LG~ay~~~~~~eeAl~~~ 298 (478)
++ .+|.-.++-|.|+..|...|+++.|++++
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~L 259 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHL 259 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 21 12333466789999999999999998877
No 330
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=72.63 E-value=16 Score=35.70 Aligned_cols=74 Identities=16% Similarity=0.078 Sum_probs=59.8
Q ss_pred HHHHHHHHHhcC-CCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHH
Q 011759 216 DVARAIAEKHWG-DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEA 294 (478)
Q Consensus 216 e~Ar~I~ek~l~-~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeA 294 (478)
+.|+..|.+..+ ..++.+.....||..|. .-+-++|+..|-++|++...- +..-.+++..|+.+|..+++++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~----~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPD----DNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCC----CCCCHHHHHHHHHHHHHhcchhhh
Confidence 567778877766 35678999999999998 667899999999999887543 233368899999999999999877
No 331
>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains. This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac
Probab=72.44 E-value=1.3e+02 Score=31.66 Aligned_cols=35 Identities=9% Similarity=0.042 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Q 011759 274 IAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSR 308 (478)
Q Consensus 274 iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~r 308 (478)
-|.+||..|+++....++.+++.+++.|+...+..
T Consensus 243 ~AlA~y~~a~~l~~~~~~g~~~a~L~~A~~~~e~a 277 (350)
T cd09244 243 KALAHYYAAMGLLLEERRLLGKAHLKEALLLHEEA 277 (350)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888888889999999988865553
No 332
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.17 E-value=10 Score=42.13 Aligned_cols=88 Identities=22% Similarity=0.214 Sum_probs=60.3
Q ss_pred CcChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q 011759 204 DESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALERE-----DIETSLSDYQKALTILERMVEPDSRHIAELN 278 (478)
Q Consensus 204 d~ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g-----~feeAl~dy~kAL~I~~~llg~d~r~iAea~ 278 (478)
-..|++.|+..|..|..-|.+.... ....+...||.+|+... ++..|+..|.+|-.+- + ..+.
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~--~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-------~---~~a~ 328 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATK--GLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-------N---PDAQ 328 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhh--cCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-------C---chHH
Confidence 4468888888887776544433211 12335677888888854 5566666666654432 3 3789
Q ss_pred HHHHHHHHcCC---CchHHHHHHHHHHH
Q 011759 279 FRICLCLEIGS---KPQEAIPYCQKAIS 303 (478)
Q Consensus 279 ~~LG~ay~~~~---~~eeAl~~~ekAL~ 303 (478)
|.||.+|.... ++..|..+|..|..
T Consensus 329 ~~lg~~~~~g~~~~d~~~A~~yy~~Aa~ 356 (552)
T KOG1550|consen 329 YLLGVLYETGTKERDYRRAFEYYSLAAK 356 (552)
T ss_pred HHHHHHHHcCCccccHHHHHHHHHHHHH
Confidence 99999999887 56799999999873
No 333
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=71.70 E-value=25 Score=29.23 Aligned_cols=36 Identities=31% Similarity=0.195 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 011759 235 ILSALAEVALEREDIETSLSDYQKALTILERMVEPD 270 (478)
Q Consensus 235 ~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d 270 (478)
.+.+.|.-+-|.|+-++|+.+|++++.+..+-+.-.
T Consensus 10 ~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~ 45 (79)
T cd02679 10 EEISKALRADEWGDKEQALAHYRKGLRELEEGIAVP 45 (79)
T ss_pred HHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 344444445667999999999999999999876433
No 334
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.31 E-value=43 Score=35.54 Aligned_cols=58 Identities=14% Similarity=0.000 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHH
Q 011759 232 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPY 297 (478)
Q Consensus 232 ~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~ 297 (478)
...+|-.++=...+.|-|++|...-+++|+|-+-- +.+++-++-++++.++++++.++
T Consensus 174 ~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D--------~Wa~Ha~aHVlem~~r~Keg~eF 231 (491)
T KOG2610|consen 174 YSYVHGMYAFGLEECGIYDDAEKQADRALQINRFD--------CWASHAKAHVLEMNGRHKEGKEF 231 (491)
T ss_pred HHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcc--------hHHHHHHHHHHHhcchhhhHHHH
Confidence 35566666666677777777777777776664322 45666666666666666555543
No 335
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=70.85 E-value=15 Score=36.46 Aligned_cols=55 Identities=13% Similarity=0.066 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 011759 250 ETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK 306 (478)
Q Consensus 250 eeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k 306 (478)
...|..+.+|+..+++.- ..|....+.+.||.-|...|+|++|+.+|+.++..++
T Consensus 155 ~~iI~lL~~A~~~f~~~~--~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr 209 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYG--QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYR 209 (247)
T ss_pred HHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 455777888888887664 3888899999999999999999999999999976655
No 336
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=70.69 E-value=32 Score=38.82 Aligned_cols=50 Identities=20% Similarity=0.145 Sum_probs=34.0
Q ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhc
Q 011759 69 LMEKGTN-ALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQE 124 (478)
Q Consensus 69 L~~~G~~-~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~ 124 (478)
|...+.. +..+|+.-+|+.||..|+-+.-.++-+ .+++.+|..|++.|+.
T Consensus 215 lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kd------i~lLSlaTiL~RaG~s 265 (886)
T KOG4507|consen 215 LHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKD------IALLSLATVLHRAGFS 265 (886)
T ss_pred HHHHHHHHHHHcCChhhhhHHHHHHhhhCCccccc------chhhhHHHHHHHcccc
Confidence 3334433 456899999999999998764332221 3678899999887543
No 337
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=69.50 E-value=11 Score=34.02 Aligned_cols=72 Identities=17% Similarity=0.149 Sum_probs=41.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH--------------------HcCCCchHHHHHHHH
Q 011759 241 EVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL--------------------EIGSKPQEAIPYCQK 300 (478)
Q Consensus 241 ev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay--------------------~~~~~~eeAl~~~ek 300 (478)
.+......+..++..|..++...+.+-.... -.++|+.||.-+ .....+++|+.++++
T Consensus 24 ~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~--~~e~lvplg~~~yv~~~v~~~~kV~v~lG~g~~vE~~~~eA~~~l~~ 101 (140)
T PRK03947 24 ALQQQLEELQASINELDTAKETLEELKSKGE--GKETLVPIGAGSFVKAKVKDKDKVIVSLGAGYSAEKDLDEAIEILDK 101 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCC--CCeEEEEcCCCcEEEEEecCCCeEEEEcCCCEEEEecHHHHHHHHHH
Confidence 3445556677888888888888876653211 124555555322 222345677777666
Q ss_pred HHHHHHHHHHHHHH
Q 011759 301 AISVCKSRVQRLLN 314 (478)
Q Consensus 301 AL~I~k~rl~~l~~ 314 (478)
-++.+...+..++.
T Consensus 102 ~~~~l~~~~~~l~~ 115 (140)
T PRK03947 102 RKEELEKALEKLEE 115 (140)
T ss_pred HHHHHHHHHHHHHH
Confidence 66555555555433
No 338
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=69.40 E-value=44 Score=37.47 Aligned_cols=85 Identities=12% Similarity=-0.002 Sum_probs=56.9
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHH
Q 011759 217 VARAIAEKHWGDSMEKVDILSALAEVALE--REDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEA 294 (478)
Q Consensus 217 ~Ar~I~ek~l~~~~~~Ad~~~~LGev~le--~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeA 294 (478)
+-..+|+.. +-...--++.+||++--- ...-..++..|.+|+...+.+|...|- --|-.+|-.|.+.++|.+|
T Consensus 263 lLw~lyd~g--hl~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~Hv---YPYty~gg~~yR~~~~~eA 337 (618)
T PF05053_consen 263 LLWLLYDMG--HLARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHV---YPYTYLGGYYYRHKRYREA 337 (618)
T ss_dssp HHHHHHHTT--TTTT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--S---HHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHhcC--chhhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCcc---ccceehhhHHHHHHHHHHH
Confidence 334455543 222345567777776432 223466899999999999999987664 5688899999999999999
Q ss_pred HHHHHHHHHHHH
Q 011759 295 IPYCQKAISVCK 306 (478)
Q Consensus 295 l~~~ekAL~I~k 306 (478)
+.++-.|-.++.
T Consensus 338 ~~~Wa~aa~Vi~ 349 (618)
T PF05053_consen 338 LRSWAEAADVIR 349 (618)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999888876653
No 339
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=69.27 E-value=1.4e+02 Score=30.67 Aligned_cols=71 Identities=14% Similarity=0.180 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC----------ChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 011759 236 LSALAEVALEREDIETSLSDYQKALTILERMVEPD----------SRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (478)
Q Consensus 236 ~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d----------~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~ 305 (478)
|...=.-.+..-.|+.-...|.+||.......... ...+..++.+++.-+...|-.+.|+..+|..|++.
T Consensus 105 yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 105 YLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 33333333566788999999999999988876543 56788889999999999999999999999998875
Q ss_pred H
Q 011759 306 K 306 (478)
Q Consensus 306 k 306 (478)
-
T Consensus 185 ~ 185 (321)
T PF08424_consen 185 F 185 (321)
T ss_pred c
Confidence 3
No 340
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=68.59 E-value=5.3 Score=39.99 Aligned_cols=59 Identities=19% Similarity=0.165 Sum_probs=51.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Q 011759 242 VALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSR 308 (478)
Q Consensus 242 v~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~r 308 (478)
...+.++++-|.+.|.++|.+..+. +..||++|.-.+..|+++.|...|++.|++-..-
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w--------~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEW--------AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchh--------hhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3467789999999999999998765 5899999999999999999999999999886543
No 341
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=68.15 E-value=34 Score=35.75 Aligned_cols=33 Identities=15% Similarity=0.079 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 011759 273 HIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (478)
Q Consensus 273 ~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~ 305 (478)
.-|.+||.+|..+...+++.+||.+++.|+..+
T Consensus 251 ~~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l 283 (346)
T cd09247 251 HEARSQLYLARRLKEAGHIGVAVGVLREALRNL 283 (346)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 358899999999999999999999999999853
No 342
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=68.02 E-value=24 Score=29.52 Aligned_cols=58 Identities=16% Similarity=0.091 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccC
Q 011759 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEA 126 (478)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~es 126 (478)
..+...+..|-++|...+..+|+.++..||+... ..++...++-.+-.||.+.|.++.
T Consensus 4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~-----~~~~rf~~lG~l~qA~~e~Gkyr~ 61 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKIT-----DREDRFRVLGYLIQAHMEWGKYRE 61 (80)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcC-----ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577889999999999999999999999999753 256777888888888888877754
No 343
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=67.55 E-value=15 Score=41.67 Aligned_cols=92 Identities=21% Similarity=0.204 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhcCC----CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH----hcCCCChHHHHHHHHHHHHHH
Q 011759 215 LDVARAIAEKHWGD----SMEKVDILSALAEVALEREDIETSLSDYQKALTILER----MVEPDSRHIAELNFRICLCLE 286 (478)
Q Consensus 215 Le~Ar~I~ek~l~~----~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~----llg~d~r~iAea~~~LG~ay~ 286 (478)
|+.||+||++...- --+++.+|.+-|+.-+...+|+.|+...+.|+.+=.. .+...+|--+..|..| .++.
T Consensus 403 l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSl-kiWs 481 (835)
T KOG2047|consen 403 LDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSL-KIWS 481 (835)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhH-HHHH
Confidence 46778888877542 2468999999999999999999999999998865332 3444455555555444 4455
Q ss_pred cCCCchHHHHHHHHHHHHHHH
Q 011759 287 IGSKPQEAIPYCQKAISVCKS 307 (478)
Q Consensus 287 ~~~~~eeAl~~~ekAL~I~k~ 307 (478)
+.-++++++--|+..-.++.+
T Consensus 482 ~y~DleEs~gtfestk~vYdr 502 (835)
T KOG2047|consen 482 MYADLEESLGTFESTKAVYDR 502 (835)
T ss_pred HHHHHHHHhccHHHHHHHHHH
Confidence 555566655555554444443
No 344
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.29 E-value=10 Score=40.78 Aligned_cols=79 Identities=16% Similarity=0.145 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHcCCCchHHHHH---HHHHHHHHHH
Q 011759 232 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSR-HIAELNFRICLCLEIGSKPQEAIPY---CQKAISVCKS 307 (478)
Q Consensus 232 ~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r-~iAea~~~LG~ay~~~~~~eeAl~~---~ekAL~I~k~ 307 (478)
-|-+..++|..|-+.++.++|+.+|++.|.+...-.+-..+ .++. ....|+.|..+ ++.++.-.+-
T Consensus 21 ~A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~GIpvg~k~k~~~----------~~~~W~dAcaliQklkes~~~vr~ 90 (560)
T KOG2709|consen 21 GAYASVEQGLCYDEVNDWENALAMYEKGLNLIVEGIPVGEKMKNAR----------KSEMWKDACALIQKLKESKSSVRH 90 (560)
T ss_pred HHHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHhcCcccccccccc----------cchhhHHHHHHHHHHHHHHHHHHH
Confidence 35577899999999999999999999999999883332221 1111 11223344333 3334555566
Q ss_pred HHHHHHHHHHhhc
Q 011759 308 RVQRLLNEVKSLG 320 (478)
Q Consensus 308 rl~~l~~~l~~~~ 320 (478)
||.-|++.+.+..
T Consensus 91 Rl~vL~kqkqsid 103 (560)
T KOG2709|consen 91 RLNVLKKQKQSID 103 (560)
T ss_pred HHHHHHhhhcccc
Confidence 7777766555443
No 345
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=66.68 E-value=30 Score=35.92 Aligned_cols=68 Identities=19% Similarity=0.133 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHH
Q 011759 235 ILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQ 310 (478)
Q Consensus 235 ~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~rl~ 310 (478)
.++.-+.-|++.|.|.+|+++.+++|.+.+ ..-..+.-|-..|...|+--.|+.||++--.++++.++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldp--------L~e~~nk~lm~~la~~gD~is~~khyerya~vleaelg 348 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDP--------LSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELG 348 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCh--------hhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhC
Confidence 344567789999999999999999998754 33467778888999999999999999987776665543
No 346
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=66.59 E-value=52 Score=26.78 Aligned_cols=36 Identities=6% Similarity=-0.061 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHH
Q 011759 276 ELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQR 311 (478)
Q Consensus 276 ea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~rl~~ 311 (478)
.-+..-|+-....|+|++|+.+|..+|+.|...+..
T Consensus 7 i~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~ 42 (75)
T cd02684 7 IALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHY 42 (75)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh
Confidence 334455566777899999999999999998777643
No 347
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=66.36 E-value=13 Score=31.23 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=26.3
Q ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 011759 229 SMEKVDILSALAEVALEREDIETSLSDYQKALTIL 263 (478)
Q Consensus 229 ~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~ 263 (478)
.+.-.+..+.||..++..|+|++|+..+-..+..-
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34456899999999999999999998876665543
No 348
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=66.20 E-value=21 Score=30.09 Aligned_cols=54 Identities=15% Similarity=0.070 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------H---HHhhCCCChhHHHHHHHHHHHHH
Q 011759 66 ADELMEKGTNALKESDYGEAAECFSRALEI------------R---VSHYGELALECVNAYYQYGRALL 119 (478)
Q Consensus 66 A~~L~~~G~~~~~~gdy~eAve~ys~Alei------------~---~~~~Ge~~pe~A~~y~~YG~ALl 119 (478)
....+.++..++..|+|++|++.|-+.+.. + -+.+|..||-+...--.+..+||
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL~~lL~ 90 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKLASLLF 90 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhC
Confidence 567788999999999999999998765432 1 24468888888888777777765
No 349
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.63 E-value=32 Score=33.59 Aligned_cols=65 Identities=17% Similarity=0.147 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 011759 231 EKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 300 (478)
Q Consensus 231 ~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ek 300 (478)
.-+-.-..|+..+.+.++|++|+..++.+|..-. |.-.-+-+-.+|+.++..++++++|+.....
T Consensus 87 Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~-----De~lk~l~~lRLArvq~q~~k~D~AL~~L~t 151 (207)
T COG2976 87 YAVLAALELAKAEVEANNLDKAEAQLKQALAQTK-----DENLKALAALRLARVQLQQKKADAALKTLDT 151 (207)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccch-----hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 3455677889999999999999999999885433 3445577788999999999999998776543
No 350
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=64.75 E-value=25 Score=29.40 Aligned_cols=53 Identities=21% Similarity=0.216 Sum_probs=38.2
Q ss_pred HHHHHHHHhcC---CCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 011759 217 VARAIAEKHWG---DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEP 269 (478)
Q Consensus 217 ~Ar~I~ek~l~---~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~ 269 (478)
.|+.++.+.+. ..+..-.++-.|..+|.+.|+|.+++.+--+=+.|..++-.|
T Consensus 24 ~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~ 79 (80)
T PF10579_consen 24 QALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP 79 (80)
T ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 34444444433 234566777788899999999999999998888888877543
No 351
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=64.59 E-value=3e+02 Score=32.65 Aligned_cols=79 Identities=18% Similarity=0.030 Sum_probs=57.2
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGD-SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLC 284 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~-~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~a 284 (478)
++++.|.++.+.+++- .... ....+.++..+|.+..-.|+|++|+.+.+.+.++.+++- .-..-+.+++..+.+
T Consensus 472 ~~~e~a~~lar~al~~---L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~--~~~l~~~~~~~~s~i 546 (894)
T COG2909 472 GDPEEAEDLARLALVQ---LPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD--VYHLALWSLLQQSEI 546 (894)
T ss_pred CCHHHHHHHHHHHHHh---cccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHH
Confidence 4566666554444432 2221 123578999999999999999999999999999998873 223346677778888
Q ss_pred HHcCC
Q 011759 285 LEIGS 289 (478)
Q Consensus 285 y~~~~ 289 (478)
+..+|
T Consensus 547 l~~qG 551 (894)
T COG2909 547 LEAQG 551 (894)
T ss_pred HHHhh
Confidence 88888
No 352
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=64.32 E-value=3.3 Score=45.07 Aligned_cols=107 Identities=16% Similarity=0.026 Sum_probs=70.6
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCC-------CchHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHhcCCCChHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGD-------SMEKVDILSALAEVALEREDIETSL-SDYQKALTILERMVEPDSRHIAEL 277 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~-------~~~~Ad~~~~LGev~le~g~feeAl-~dy~kAL~I~~~llg~d~r~iAea 277 (478)
-|+--|+.++.+|...-...... .+..+.-|......-.+.+-+.+=. ..--++|-|++.++|+.|+.++--
T Consensus 260 ~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p~~ay~~~re~~~~~elE~lv~D~d~~RmqaLiirerILgpsh~d~sYy 339 (615)
T KOG0508|consen 260 RDLLGALKYWRRAMEERESDGESILEKEPLEPVLAYGYGREVNNREELEELVEDPDEMRMQALIIRERILGPSHPDVSYY 339 (615)
T ss_pred HHHHHHHHHHHHHHHhhhhccccccccCCCCchhhhhhhhhcCCHHHHHHHhcChHHHHHHHHHHHHHHhCCCCCCceeE
Confidence 36667777776665554432111 2334443333333323332222222 233579999999999999988766
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHH
Q 011759 278 NFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRL 312 (478)
Q Consensus 278 ~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~rl~~l 312 (478)
....|-+|..+++|+.-|..+.-||.+.++.++.|
T Consensus 340 ir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~Pl 374 (615)
T KOG0508|consen 340 IRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPL 374 (615)
T ss_pred EEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCC
Confidence 66789999999999999999999999999866554
No 353
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.32 E-value=26 Score=38.81 Aligned_cols=94 Identities=23% Similarity=0.176 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHHHHHHh---cCCCC--hHH-----------HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHH
Q 011759 248 DIETSLSDYQKALTILERM---VEPDS--RHI-----------AELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQR 311 (478)
Q Consensus 248 ~feeAl~dy~kAL~I~~~l---lg~d~--r~i-----------Aea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~rl~~ 311 (478)
++.+=+..|...+++...+ -|-+| -.+ |--.|.|+..|...++|.+|+..|.+|..-.+.....
T Consensus 379 rpqdl~RLYd~iiknl~e~~elPG~~~D~~l~sqle~~~~~fkafRC~~iA~sY~a~~K~~EAlALy~Ra~sylqe~~~~ 458 (593)
T KOG2460|consen 379 RPQDLERLYDSIIKNLSEIMELPGLESDKELQSQLELKKLYFKAFRCFYIAVSYQAKKKYSEALALYVRAYSYLQEVNSE 458 (593)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5666677777777666654 33332 111 2224668888888889999999998888754444443
Q ss_pred HHHHHHhhccCCCCCCCccccccccccccccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 011759 312 LLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKKLEDLQQV 375 (478)
Q Consensus 312 l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Ei~elk~ll~dl~~KieDlk~~ 375 (478)
+ ++...+ . -+..+.+++++|+.....++..
T Consensus 459 l----~s~~e~------------------------l------~~~~~~eli~el~k~k~s~~a~ 488 (593)
T KOG2460|consen 459 L----ESFKES------------------------L------LPLLLLELISELQKRKESLGAA 488 (593)
T ss_pred h----hchhhc------------------------c------cchHHHHHHHHHHHHHHhhhhh
Confidence 3 322110 0 1146889999999999988774
No 354
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=63.68 E-value=34 Score=30.48 Aligned_cols=79 Identities=11% Similarity=0.045 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCC
Q 011759 212 WKMLDVARAIAEKHWG--DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGS 289 (478)
Q Consensus 212 wE~Le~Ar~I~ek~l~--~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~ 289 (478)
..+|+++...|..... +.++...++...++... ++...|.- +..+-.| ..+|.-|-..|..|+..+
T Consensus 46 ~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~---l~~~~IG---~~~A~fY~~wA~~le~~~ 113 (126)
T PF08311_consen 46 LELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKF---LYSKGIG---TKLALFYEEWAEFLEKRG 113 (126)
T ss_dssp HHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHH---HHHHTTS---TTBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHH---HHHcCcc---HHHHHHHHHHHHHHHHcC
Confidence 5678888888865433 34677888888777443 55555542 2233333 335788999999999999
Q ss_pred CchHHHHHHHHHH
Q 011759 290 KPQEAIPYCQKAI 302 (478)
Q Consensus 290 ~~eeAl~~~ekAL 302 (478)
++++|.+.|+++|
T Consensus 114 ~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 114 NFKKADEIYQLGI 126 (126)
T ss_dssp -HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhC
Confidence 9999999999876
No 355
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=63.55 E-value=21 Score=33.98 Aligned_cols=47 Identities=15% Similarity=0.008 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhH
Q 011759 61 KTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALEC 107 (478)
Q Consensus 61 ~~l~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~ 107 (478)
.+..+...|.++=..|-.+|+|+.|+-...+||+-+...+|..||++
T Consensus 135 E~~~rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~v 181 (181)
T PF09311_consen 135 EIPARLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPDV 181 (181)
T ss_dssp TS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCC
Confidence 45567888999999999999999999999999999999999999974
No 356
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=63.49 E-value=25 Score=41.80 Aligned_cols=100 Identities=17% Similarity=0.045 Sum_probs=70.5
Q ss_pred CcChHHHHHHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 011759 204 DESDLDLAWKMLDVARAIAEKHWGDSM---EKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFR 280 (478)
Q Consensus 204 d~ddle~AwE~Le~Ar~I~ek~l~~~~---~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~ 280 (478)
.+.|-=+|...|+.|+..|.|....=| +=-++.+.+|...++.-.-..--..|.+||.....+.+ .+.-.-=|..
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 557 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG--GVGAPLEYLG 557 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC--CCCCchHHHh
Confidence 466777899999999999988755322 23456778887777654333333677777777777753 2222244667
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHHH
Q 011759 281 ICLCLEIGSKPQEAIPYCQKAISVC 305 (478)
Q Consensus 281 LG~ay~~~~~~eeAl~~~ekAL~I~ 305 (478)
-+++|..+++|++-+++|.-|+.=+
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRY 582 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 7889999999999999999888643
No 357
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=63.14 E-value=12 Score=24.71 Aligned_cols=28 Identities=25% Similarity=0.430 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHcC----CCchHHHHHHHHHHH
Q 011759 276 ELNFRICLCLEIG----SKPQEAIPYCQKAIS 303 (478)
Q Consensus 276 ea~~~LG~ay~~~----~~~eeAl~~~ekAL~ 303 (478)
.+.++||.+|... .++.+|+.+|++|.+
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 5788999999764 378899999999864
No 358
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=63.01 E-value=19 Score=31.84 Aligned_cols=79 Identities=18% Similarity=0.324 Sum_probs=46.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC--Ch----------------HHHHHHHHHHHHHHcCCCchHHHHHHH
Q 011759 238 ALAEVALEREDIETSLSDYQKALTILERMVEPD--SR----------------HIAELNFRICLCLEIGSKPQEAIPYCQ 299 (478)
Q Consensus 238 ~LGev~le~g~feeAl~dy~kAL~I~~~llg~d--~r----------------~iAea~~~LG~ay~~~~~~eeAl~~~e 299 (478)
.+-.+.....++...+..|..+++....+-+.. +. ..-.++..||.=|+-...+++|+.+++
T Consensus 14 ~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~vE~~~~eA~~~l~ 93 (129)
T cd00584 14 EIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYVEKDLEEAIEFLD 93 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEEEecHHHHHHHHH
Confidence 344445555667788888888888887775411 10 001233445555555556678887777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011759 300 KAISVCKSRVQRLLNEV 316 (478)
Q Consensus 300 kAL~I~k~rl~~l~~~l 316 (478)
+-++.++.++..|++.+
T Consensus 94 ~r~~~l~~~~~~l~~~l 110 (129)
T cd00584 94 KKIEELTKQIEKLQKEL 110 (129)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 76666666666654443
No 359
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.99 E-value=25 Score=38.95 Aligned_cols=74 Identities=12% Similarity=-0.055 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCC-chHHHHHHHHHHHHH
Q 011759 231 EKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSK-PQEAIPYCQKAISVC 305 (478)
Q Consensus 231 ~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~-~eeAl~~~ekAL~I~ 305 (478)
+..=.|..+|-+...+|+-.+|..+|..+++= +...-.++-.++-+||-||..|-..+. +.++..+..+|-+-.
T Consensus 447 d~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~-e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 447 DEGLKYLLKGVILRNLGDSEVAPKCFKIQVEK-ESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 34556889999999999999999999999865 444445777889999999999998888 899999988887654
No 360
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=62.35 E-value=23 Score=41.44 Aligned_cols=70 Identities=13% Similarity=-0.064 Sum_probs=47.5
Q ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 011759 229 SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK 306 (478)
Q Consensus 229 ~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k 306 (478)
+|+.--+...=|-+..++|++++|.. +|+-.....+.+. .++--|-.||..++++++|..+|++++..+.
T Consensus 39 ~Pn~~~a~vLkaLsl~r~gk~~ea~~----~Le~~~~~~~~D~----~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P 108 (932)
T KOG2053|consen 39 HPNALYAKVLKALSLFRLGKGDEALK----LLEALYGLKGTDD----LTLQFLQNVYRDLGKLDEAVHLYERANQKYP 108 (932)
T ss_pred CCCcHHHHHHHHHHHHHhcCchhHHH----HHhhhccCCCCch----HHHHHHHHHHHHHhhhhHHHHHHHHHHhhCC
Confidence 34444445555667888899998873 3333333333333 4556677899999999999999999887554
No 361
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=61.94 E-value=6.3 Score=34.82 Aligned_cols=45 Identities=9% Similarity=0.130 Sum_probs=26.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcC
Q 011759 241 EVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIG 288 (478)
Q Consensus 241 ev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~ 288 (478)
.+.....++..++..|+.++.....+-..+. -++++.||.-.+..
T Consensus 17 ~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~---~~~lv~lg~~~~v~ 61 (126)
T TIGR00293 17 SLQAQIAALRALIAELETAIETLEDLKGAEG---KETLVPVGAGSFVK 61 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCC---CeEEEEcCCCeEEE
Confidence 3444555677788888888888876654311 24555555544433
No 362
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=61.83 E-value=13 Score=25.20 Aligned_cols=29 Identities=21% Similarity=0.293 Sum_probs=21.3
Q ss_pred HHHHHHHH--HHHHcCC-----CchHHHHHHHHHHH
Q 011759 275 AELNFRIC--LCLEIGS-----KPQEAIPYCQKAIS 303 (478)
Q Consensus 275 Aea~~~LG--~ay~~~~-----~~eeAl~~~ekAL~ 303 (478)
+++.|+|| .+|.... ++.+|+.+|++|.+
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHH
Confidence 46889999 6666554 36788888888764
No 363
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=61.32 E-value=2.3e+02 Score=30.27 Aligned_cols=49 Identities=14% Similarity=-0.066 Sum_probs=34.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC-ChhHHHHHHHHHHHHHhh
Q 011759 70 MEKGTNALKESDYGEAAECFSRALEIRVSHYGEL-ALECVNAYYQYGRALLYK 121 (478)
Q Consensus 70 ~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~-~pe~A~~y~~YG~ALl~~ 121 (478)
-.+|..++-.+||+-|...|.-+..=+. -+. ---.|.++-..|.+++-.
T Consensus 212 R~LAD~aFml~Dy~~A~s~Y~~~k~Df~---~Dkaw~~~A~~~Em~alsl~~~ 261 (414)
T PF12739_consen 212 RRLADLAFMLRDYELAYSTYRLLKKDFK---NDKAWKYLAGAQEMAALSLLMQ 261 (414)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHh---hchhHHHHHhHHHHHHHHHHhc
Confidence 3567789999999999999988776431 121 234566777777777754
No 364
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=60.78 E-value=48 Score=36.66 Aligned_cols=78 Identities=17% Similarity=0.265 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHH
Q 011759 215 LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEA 294 (478)
Q Consensus 215 Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeA 294 (478)
+.+||.||++.++......-.+...++.-+.+.+..-|...+.+|+.|+..+. ..+|+.-..-+.+|+..-|
T Consensus 89 ~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd--------qlWyKY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 89 IQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD--------QLWYKYIYMEEMLGNIAGA 160 (677)
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH--------HHHHHHHHHHHHhcccHHH
Confidence 46778888888775455667888889999999999999999999999887653 6777777777777777666
Q ss_pred HHHHHH
Q 011759 295 IPYCQK 300 (478)
Q Consensus 295 l~~~ek 300 (478)
...|++
T Consensus 161 Rqifer 166 (677)
T KOG1915|consen 161 RQIFER 166 (677)
T ss_pred HHHHHH
Confidence 666655
No 365
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=59.40 E-value=16 Score=26.96 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=22.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 011759 70 MEKGTNALKESDYGEAAECFSRALE 94 (478)
Q Consensus 70 ~~~G~~~~~~gdy~eAve~ys~Ale 94 (478)
+.+++.|+.+||++.|.+.+.+.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999999885
No 366
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=58.52 E-value=13 Score=27.43 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011759 236 LSALAEVALEREDIETSLSDYQKALT 261 (478)
Q Consensus 236 ~~~LGev~le~g~feeAl~dy~kAL~ 261 (478)
...|+..|+++|+++.|...+++.+.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 35799999999999999999888773
No 367
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=57.72 E-value=21 Score=38.76 Aligned_cols=54 Identities=30% Similarity=0.390 Sum_probs=41.1
Q ss_pred ChHHHHHHH--HHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011759 206 SDLDLAWKM--LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 264 (478)
Q Consensus 206 ddle~AwE~--Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~ 264 (478)
-.|++|.++ |+.|+.|.... .-...|..||++.+.+|+++-|..+|+++=++-.
T Consensus 323 ~rFeLAl~lg~L~~A~~~a~~~-----~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~ 378 (443)
T PF04053_consen 323 HRFELALQLGNLDIALEIAKEL-----DDPEKWKQLGDEALRQGNIELAEECYQKAKDFSG 378 (443)
T ss_dssp HHHHHHHHCT-HHHHHHHCCCC-----STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHH
T ss_pred HHhHHHHhcCCHHHHHHHHHhc-----CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccc
Confidence 567777764 67777765432 3455999999999999999999999998855443
No 368
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=57.30 E-value=24 Score=24.75 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHH
Q 011759 276 ELNFRICLCLEIGSKPQEAIPYCQ 299 (478)
Q Consensus 276 ea~~~LG~ay~~~~~~eeAl~~~e 299 (478)
+-+|.+|..+...|++++|+..|+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHH
Confidence 457889999999999999999965
No 369
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=57.23 E-value=51 Score=35.88 Aligned_cols=60 Identities=12% Similarity=0.077 Sum_probs=39.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 011759 237 SALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 237 ~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I 304 (478)
..|..+|+.+++.+-|+.+-.+++.+-..++ .-|..-+.|+..+.+|.+|...+--|.=+
T Consensus 232 tklv~CYL~~rkpdlALnh~hrsI~lnP~~f--------rnHLrqAavfR~LeRy~eAarSamia~ym 291 (569)
T PF15015_consen 232 TKLVTCYLRMRKPDLALNHSHRSINLNPSYF--------RNHLRQAAVFRRLERYSEAARSAMIADYM 291 (569)
T ss_pred HHHHHhhhhcCCCchHHHHHhhhhhcCcchh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777778777777776655444 45666677777777777777665444433
No 370
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=57.07 E-value=38 Score=32.35 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC
Q 011759 249 IETSLSDYQKALTILERMVEPDS 271 (478)
Q Consensus 249 feeAl~dy~kAL~I~~~llg~d~ 271 (478)
...++..+..+=+|..+.||..-
T Consensus 42 vqk~Ld~La~~Gki~~K~YGKqK 64 (201)
T KOG4603|consen 42 VQKTLDQLAQQGKIKEKMYGKQK 64 (201)
T ss_pred HHHHHHHHHHcCchhHHhcccee
Confidence 45667777777778888887654
No 371
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=56.84 E-value=32 Score=31.89 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=46.4
Q ss_pred ChHHHHHHHH--------HHHHHHHHHhcC--CCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011759 206 SDLDLAWKML--------DVARAIAEKHWG--DSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 264 (478)
Q Consensus 206 ddle~AwE~L--------e~Ar~I~ek~l~--~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~ 264 (478)
..|..||-+. ..-+.|++..+. +..+.-+|.+-|+--+...++|+.|+.+...+|++..
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~ 102 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEP 102 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCC
Confidence 6899999765 455677777663 3455678999999999999999999999888877654
No 372
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.54 E-value=47 Score=37.83 Aligned_cols=71 Identities=21% Similarity=0.161 Sum_probs=54.2
Q ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Q 011759 229 SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 307 (478)
Q Consensus 229 ~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~ 307 (478)
....+....+|.-+|+.+.+.|.|++.|++|-+..++. --+.+.+-.+....+.-++|+.+.++.+.++..
T Consensus 390 ~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~--------~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 390 SDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQS--------PLCQLLMLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccc--------HHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 35679999999999999999999999999997765544 345555555556677778888888777666543
No 373
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=56.39 E-value=2e+02 Score=34.77 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=25.0
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHHhhcC
Q 011759 346 KLLTDKEAEIETLSGLCGDLEKKLEDLQQVALF 378 (478)
Q Consensus 346 ~~~~~~~~Ei~elk~ll~dl~~KieDlk~~~~~ 378 (478)
+....++.|++.|+.++..|..++.++++....
T Consensus 401 ~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~ 433 (1074)
T KOG0250|consen 401 NKLEQLKKEVEKLEEQINSLREELNEVKEKAKE 433 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888888888888887764443
No 374
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=56.01 E-value=60 Score=30.59 Aligned_cols=70 Identities=21% Similarity=0.176 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 011759 207 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 286 (478)
Q Consensus 207 dle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~ 286 (478)
+++.+-.+|+--|++ .|+.......-|.+++.+++|.+|+..|+.. ....+....+---|++||.
T Consensus 25 ~~~D~e~lL~ALrvL-------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l--------~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 25 DPDDAEALLDALRVL-------RPEFPELDLFDGWLHIVRGDWDDALRLLREL--------EERAPGFPYAKALLALCLY 89 (160)
T ss_pred ChHHHHHHHHHHHHh-------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHH--------hccCCCChHHHHHHHHHHH
Confidence 444455555544443 4678889999999999999999999888764 1223333333345677777
Q ss_pred cCCCc
Q 011759 287 IGSKP 291 (478)
Q Consensus 287 ~~~~~ 291 (478)
.+++.
T Consensus 90 ~~~D~ 94 (160)
T PF09613_consen 90 ALGDP 94 (160)
T ss_pred HcCCh
Confidence 77775
No 375
>PF15469 Sec5: Exocyst complex component Sec5
Probab=55.76 E-value=43 Score=31.38 Aligned_cols=50 Identities=24% Similarity=0.394 Sum_probs=35.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMV 267 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~ll 267 (478)
+.+..+..+|+.-+-+|.=- ..|- -++..|+|+.++.+|.++..++.+..
T Consensus 71 ~~l~~~l~~l~r~~flF~LP-----------~~L~-~~i~~~dy~~~i~dY~kak~l~~~~~ 120 (182)
T PF15469_consen 71 DKLRNALEFLQRNRFLFNLP-----------SNLR-ECIKKGDYDQAINDYKKAKSLFEKYK 120 (182)
T ss_pred HHHHHHHHHHHHHHHHHHhH-----------HHHH-HHHHcCcHHHHHHHHHHHHHHHHHhh
Confidence 56777777777777666411 1111 13678999999999999999998764
No 376
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=55.66 E-value=30 Score=37.85 Aligned_cols=70 Identities=23% Similarity=0.275 Sum_probs=52.0
Q ss_pred HHHHHHHH--HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHH------------
Q 011759 233 VDILSALA--EVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYC------------ 298 (478)
Q Consensus 233 Ad~~~~LG--ev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~------------ 298 (478)
++.-+-|+ +-....|+|..+.-+-.-..+|.+. ..+|--||+|+....+|.+|..++
T Consensus 460 ~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS---------~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~~~~ds 530 (549)
T PF07079_consen 460 EEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPS---------PQAYRLLGLCLMENKRYQEAWEYLQKLPPNERMRDS 530 (549)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCc---------HHHHHHHHHHHHHHhhHHHHHHHHHhCCCchhhHHH
Confidence 34444444 4466788888888777766666653 378889999999999999999875
Q ss_pred --HHHHHHHHHHHHH
Q 011759 299 --QKAISVCKSRVQR 311 (478)
Q Consensus 299 --ekAL~I~k~rl~~ 311 (478)
+||+.+|.+++.+
T Consensus 531 kvqKAl~lCqKh~~k 545 (549)
T PF07079_consen 531 KVQKALALCQKHLPK 545 (549)
T ss_pred HHHHHHHHHHHhhhh
Confidence 5788888777653
No 377
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=55.55 E-value=1.7e+02 Score=30.59 Aligned_cols=65 Identities=9% Similarity=0.013 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 011759 235 ILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKA 301 (478)
Q Consensus 235 ~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekA 301 (478)
.-..|.-+++..++|.+|+....-.|.=.+++- +.+.+...|.-=..+|.......++....-.|
T Consensus 127 Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~D--DK~~Li~vhllESKvyh~irnv~KskaSLTaA 191 (421)
T COG5159 127 LECKLIYLLYKTGKYSDALALINPLLHELKKYD--DKINLITVHLLESKVYHEIRNVSKSKASLTAA 191 (421)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhc--CccceeehhhhhHHHHHHHHhhhhhhhHHHHH
Confidence 345677889999999999999988888888774 55666777777777887777666665555443
No 378
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=55.50 E-value=1.3e+02 Score=35.93 Aligned_cols=142 Identities=20% Similarity=0.150 Sum_probs=86.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCCccc
Q 011759 69 LMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDS 148 (478)
Q Consensus 69 L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~de~ 148 (478)
.+.-..++++.+.|+.|+..|.+..+-. +.--|=-++.|..|.+|++++....
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 530 (932)
T PRK13184 478 CLAVPDAFLAEKLYDQALIFYRRIRESF-----PGRKEGYEAQFRLGITLLEKASEQG---------------------- 530 (932)
T ss_pred cccCcHHHHhhHHHHHHHHHHHHHhhcC-----CCcccchHHHHHhhHHHHHHHHhcC----------------------
Confidence 3445667888889999999888876642 2223455789999999998742210
Q ss_pred cccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcCC
Q 011759 149 VKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGD 228 (478)
Q Consensus 149 ~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~l~~ 228 (478)
+..+| ..|+..|++..+.
T Consensus 531 -------------------------------------------------------~~~~~-------~~~~~~~~~~~~~ 548 (932)
T PRK13184 531 -------------------------------------------------------DPRDF-------TQALSEFSYLHGG 548 (932)
T ss_pred -------------------------------------------------------ChHHH-------HHHHHHHHHhcCC
Confidence 01234 4555666665442
Q ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH----HHHHHHHHcCCCchHHHHHHHHHHHH
Q 011759 229 SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELN----FRICLCLEIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 229 ~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~----~~LG~ay~~~~~~eeAl~~~ekAL~I 304 (478)
+..--=|.--|.||+++++|++=+.+|.-||+-.. .||.|...- |+|=-++... ...|+..+--++.+
T Consensus 549 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 620 (932)
T PRK13184 549 -VGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYS-----QHPEISRLRDHLVYRLHESLYKH--RREALVFMLLALWI 620 (932)
T ss_pred -CCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcC-----CCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHh
Confidence 11122355667899999999999999988776543 566665543 3333333322 23455555556655
Q ss_pred HHH
Q 011759 305 CKS 307 (478)
Q Consensus 305 ~k~ 307 (478)
...
T Consensus 621 ~~~ 623 (932)
T PRK13184 621 APE 623 (932)
T ss_pred Ccc
Confidence 543
No 379
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.22 E-value=3.4e+02 Score=30.81 Aligned_cols=94 Identities=15% Similarity=0.131 Sum_probs=58.6
Q ss_pred ChHHHHHHHHHHHHHHHHHhcC-CC---chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWG-DS---MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRI 281 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~-~~---~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~L 281 (478)
+...-|| +.++.|+.-... +. ..+++.|...+.-|...-+|-++.+-+.+ |. ++..--|.+
T Consensus 356 GC~rTA~---E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~-l~-----------~~PN~~yS~ 420 (665)
T KOG2422|consen 356 GCWRTAL---EWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK-LS-----------QLPNFGYSL 420 (665)
T ss_pred CChHHHH---HHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc-Hh-----------hcCCchHHH
Confidence 3444565 446666653333 22 34577787777777666655554433321 11 122456788
Q ss_pred HHHHHcCCCc-----hHHHHHHHHHHHHHHHHHHHHHH
Q 011759 282 CLCLEIGSKP-----QEAIPYCQKAISVCKSRVQRLLN 314 (478)
Q Consensus 282 G~ay~~~~~~-----eeAl~~~ekAL~I~k~rl~~l~~ 314 (478)
++|+.+..+. ..|+..+.+|+..+...|-.|-.
T Consensus 421 AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~vl~eLld 458 (665)
T KOG2422|consen 421 ALARFFLRKNEEDDRQSALNALLQALKHHPLVLSELLD 458 (665)
T ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 8888877654 46999999999999988877733
No 380
>PRK10941 hypothetical protein; Provisional
Probab=53.95 E-value=87 Score=31.79 Aligned_cols=66 Identities=14% Similarity=0.070 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 011759 232 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (478)
Q Consensus 232 ~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~ 305 (478)
+...+.+|=.+|++.++|+.|+.+.+..|.+.. +++ .-+--.|++|..++.+..|+.-++.-|+-|
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P-----~dp---~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQFDP-----EDP---YEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCC-----CCH---HHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 467888999999999999999999988887653 443 334458999999999999988777776655
No 381
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=53.41 E-value=23 Score=29.02 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHH
Q 011759 276 ELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQR 311 (478)
Q Consensus 276 ea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~rl~~ 311 (478)
-.+...++-....++|++|+.+|..+|+.+...+..
T Consensus 7 ~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~ 42 (75)
T cd02677 7 AELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQG 42 (75)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc
Confidence 344455566666799999999999999987766543
No 382
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=53.05 E-value=1.5e+02 Score=25.67 Aligned_cols=60 Identities=20% Similarity=0.303 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccccccccccccccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Q 011759 292 QEAIPYCQKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKKLED 371 (478)
Q Consensus 292 eeAl~~~ekAL~I~k~rl~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Ei~elk~ll~dl~~KieD 371 (478)
.+.+...+..+.-...|+..++.+++.+++ .+.+..++.+|.++++=+..|..+|.-
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt-----------------------~~dv~~L~l~l~el~G~~~~l~~~l~~ 90 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPT-----------------------RDDVHDLQLELAELRGELKELSARLQG 90 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------------------HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 355556666677778999999999998864 234567888888888888888888877
Q ss_pred HHH
Q 011759 372 LQQ 374 (478)
Q Consensus 372 lk~ 374 (478)
+..
T Consensus 91 v~~ 93 (106)
T PF10805_consen 91 VSH 93 (106)
T ss_pred HHH
Confidence 655
No 383
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=52.64 E-value=2.8e+02 Score=28.51 Aligned_cols=36 Identities=19% Similarity=0.069 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 011759 231 EKVDILSALAEVALEREDIETSLSDYQKALTILERM 266 (478)
Q Consensus 231 ~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~l 266 (478)
..|-+|..+|..+.+.++|-+||..++.|+...+..
T Consensus 249 ~~a~a~~~~a~~~~e~~~~G~aia~L~~A~~~~~~~ 284 (345)
T cd09034 249 FKALAYYYHGLKLDEANKIGEAIARLQAALELLKES 284 (345)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence 357788888888888888888888888888766654
No 384
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=52.37 E-value=47 Score=35.90 Aligned_cols=35 Identities=9% Similarity=0.013 Sum_probs=29.1
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHH
Q 011759 278 NFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRL 312 (478)
Q Consensus 278 ~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~rl~~l 312 (478)
+-+++..|...|+|+.|--+|+..+..+.+.+...
T Consensus 9 ~ak~ar~~al~G~~d~~~~~~~g~~~~~~r~l~s~ 43 (491)
T KOG0738|consen 9 NAKLAREYALLGNYDSAGIYYRGLLYLMNRYLVST 43 (491)
T ss_pred HHHHHHHHHHhcCcchhHHHHHhHHHHHHHHHhcc
Confidence 34678888899999999999999998887776553
No 385
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=51.39 E-value=1.6e+02 Score=28.87 Aligned_cols=71 Identities=17% Similarity=0.110 Sum_probs=46.3
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 285 (478)
.+++.|.+.+.+|-. .+..+....+|.+++....-.++-.+..++++...+...-+ -+++.|+|..-|
T Consensus 87 ~~l~~a~r~~~~aC~---------~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~---~~~aCf~LS~m~ 154 (248)
T KOG4014|consen 87 ASLSKAIRPMKIACD---------ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE---DGEACFLLSTMY 154 (248)
T ss_pred cCHHHHHHHHHHHhc---------cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC---CchHHHHHHHHH
Confidence 578888877777753 34566777888888877666666556666666655543222 256777777766
Q ss_pred HcC
Q 011759 286 EIG 288 (478)
Q Consensus 286 ~~~ 288 (478)
...
T Consensus 155 ~~g 157 (248)
T KOG4014|consen 155 MGG 157 (248)
T ss_pred hcc
Confidence 554
No 386
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=49.95 E-value=69 Score=33.85 Aligned_cols=36 Identities=19% Similarity=-0.033 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Q 011759 273 HIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSR 308 (478)
Q Consensus 273 ~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~r 308 (478)
.-|.+||..|..+...+++.+||.+++.|...++..
T Consensus 246 f~A~A~y~~a~~l~e~~k~GeaIa~L~~A~~~~k~a 281 (353)
T cd09243 246 YLAYAYCYHGETLLAKDKCGEAIRSLQESEKLYNKA 281 (353)
T ss_pred HHHHHHHHHHHHhHhcchHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999876554
No 387
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=49.73 E-value=75 Score=29.19 Aligned_cols=53 Identities=25% Similarity=0.204 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccC
Q 011759 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEA 126 (478)
Q Consensus 66 A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~es 126 (478)
++.++.++..++..|+|.-|+.+...++.. .|++..+......+|..+|....
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~a--------dp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFA--------DPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHHHhcc
Confidence 577889999999999999999999999886 68888999999999999886543
No 388
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=49.16 E-value=1.4e+02 Score=34.62 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=14.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhh
Q 011759 351 KEAEIETLSGLCGDLEKKLEDLQQVA 376 (478)
Q Consensus 351 ~~~Ei~elk~ll~dl~~KieDlk~~~ 376 (478)
+...++++++-=..|..|++.+.+.+
T Consensus 598 LaeR~e~a~d~Qe~L~~R~~~vl~~l 623 (717)
T PF10168_consen 598 LAERYEEAKDKQEKLMKRVDRVLQLL 623 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666654433
No 389
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=49.04 E-value=2e+02 Score=28.30 Aligned_cols=50 Identities=24% Similarity=0.399 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011759 250 ETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLLNEVKSLGE 321 (478)
Q Consensus 250 eeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~rl~~l~~~l~~~~~ 321 (478)
...+.+|+.+|.....+ .++..-..-|++.|.-+...+..++.+|.....
T Consensus 17 ~~~i~~l~~al~~L~~~----------------------~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~ 66 (240)
T PF12795_consen 17 KALIQDLQQALSFLDEI----------------------KKQKKRAAEYQKQIDQAPKEIRELQKELEALKS 66 (240)
T ss_pred HHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhc
Confidence 45566677776666554 345667788999999999999999999888754
No 390
>PF12854 PPR_1: PPR repeat
Probab=48.57 E-value=30 Score=23.49 Aligned_cols=26 Identities=8% Similarity=0.156 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011759 233 VDILSALAEVALEREDIETSLSDYQK 258 (478)
Q Consensus 233 Ad~~~~LGev~le~g~feeAl~dy~k 258 (478)
.-+|+.|=..++..|++++|+..|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45899999999999999999998875
No 391
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=48.04 E-value=74 Score=32.99 Aligned_cols=65 Identities=23% Similarity=0.252 Sum_probs=38.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccccccccccccccccchhhhHHHHHHHHHHhhHHHHHHHHH
Q 011759 291 PQEAIPYCQKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKKLE 370 (478)
Q Consensus 291 ~eeAl~~~ekAL~I~k~rl~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Ei~elk~ll~dl~~Kie 370 (478)
|..+-..-+.|++. -..|..+..+++.++. .+....+.+++..|.+.+..|.|++.+|.
T Consensus 40 yQ~~EQAr~~A~~f-A~~ld~~~~kl~~Ms~--------------------~ql~~~~~k~~~si~~q~~~i~~l~~~i~ 98 (301)
T PF06120_consen 40 YQNAEQARQEAIEF-ADSLDELKEKLKEMSS--------------------TQLRANIAKAEESIAAQKRAIEDLQKKID 98 (301)
T ss_pred HHHHHHHHHHHHHH-HHhhHHHHHHHHhcCH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666664 4567777777777743 11122345556666666666777777776
Q ss_pred HHHHhh
Q 011759 371 DLQQVA 376 (478)
Q Consensus 371 Dlk~~~ 376 (478)
+|+..+
T Consensus 99 ~l~~~i 104 (301)
T PF06120_consen 99 SLKDQI 104 (301)
T ss_pred HHHHHH
Confidence 666443
No 392
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=47.23 E-value=35 Score=31.63 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=17.1
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 011759 244 LEREDIETSLSDYQKALTILERMVEPD 270 (478)
Q Consensus 244 le~g~feeAl~dy~kAL~I~~~llg~d 270 (478)
...+....++..|+.|++..+.+-+.+
T Consensus 27 ~~i~~l~~~~~e~~~~~~tl~~lk~~~ 53 (145)
T COG1730 27 AQIAALNAAISELQTAIETLENLKGAG 53 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344455677777777777777664433
No 393
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=47.22 E-value=19 Score=38.53 Aligned_cols=55 Identities=20% Similarity=0.122 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHhcCC----CChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Q 011759 251 TSLSDYQKALTILERMVEP----DSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 307 (478)
Q Consensus 251 eAl~dy~kAL~I~~~llg~----d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~ 307 (478)
.|+..+++||..+++.-.. .+..+|++|..||..|...+. +=-.+|++|-.|+++
T Consensus 329 ~a~~l~~~Al~yL~kA~d~ddPetWv~vAEa~I~LGNL~d~eS~--eQe~~Y~eAE~iL~k 387 (404)
T PF12753_consen 329 IAQELIKKALEYLKKAQDEDDPETWVDVAEAMIDLGNLYDNESK--EQEKAYKEAEKILKK 387 (404)
T ss_dssp THHHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHH-SSHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCChhHHHHHHHHHhhhhcccccchH--HHHHHHHHHHHHHHH
Confidence 3667777777777765433 356799999999999976654 234678888887654
No 394
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=47.13 E-value=1.7e+02 Score=24.33 Aligned_cols=28 Identities=14% Similarity=0.144 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011759 294 AIPYCQKAISVCKSRVQRLLNEVKSLGE 321 (478)
Q Consensus 294 Al~~~ekAL~I~k~rl~~l~~~l~~~~~ 321 (478)
-..-|..++.-++.||++.+..+..+++
T Consensus 22 ~~kd~~~~~~~lk~Klq~ar~~i~~lpg 49 (83)
T PF07544_consen 22 SSKDLDTATGSLKHKLQKARAAIRELPG 49 (83)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3456777788889999999999988764
No 395
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=46.99 E-value=3.4e+02 Score=27.84 Aligned_cols=83 Identities=18% Similarity=0.233 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCC
Q 011759 210 LAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGS 289 (478)
Q Consensus 210 ~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~ 289 (478)
.|.+....|..++.=-......+.|+...||.++.+.|..+.. |-..++..+..+
T Consensus 76 ~are~~~~A~~L~~WG~~edddl~DIsDklgvLl~e~ge~e~~---~a~~~d~yR~~L---------------------- 130 (271)
T PF13805_consen 76 AARERKAAAKQLSEWGEQEDDDLSDISDKLGVLLYEIGELEDQ---YADRLDQYRIHL---------------------- 130 (271)
T ss_dssp HHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH----------------------
Confidence 3344444454444322233457888999999998888754333 222233333222
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011759 290 KPQEAIPYCQKAISVCKSRVQRLLNEVKSLG 320 (478)
Q Consensus 290 ~~eeAl~~~ekAL~I~k~rl~~l~~~l~~~~ 320 (478)
++|.-.+.+|.-.+.+-..|..+|..+.
T Consensus 131 ---K~IR~~E~sl~p~R~~r~~l~d~I~kLk 158 (271)
T PF13805_consen 131 ---KSIRNREESLQPSRDRRRKLQDEIAKLK 158 (271)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhHHHHHhHHHHHHHHHHH
Confidence 4555556666666666666666555553
No 396
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=46.82 E-value=41 Score=21.11 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH
Q 011759 80 SDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRAL 118 (478)
Q Consensus 80 gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~AL 118 (478)
|+++.|..+|++++.. .|.+..++..|..-.
T Consensus 1 ~~~~~~r~i~e~~l~~--------~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEK--------FPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHH--------CCCChHHHHHHHHHH
Confidence 5788999999999987 467777887776543
No 397
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.65 E-value=1.9e+02 Score=31.85 Aligned_cols=97 Identities=14% Similarity=-0.020 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHHHHHH----hcC----C---CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC-----
Q 011759 207 DLDLAWKMLDVARAIAEK----HWG----D---SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPD----- 270 (478)
Q Consensus 207 dle~AwE~Le~Ar~I~ek----~l~----~---~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d----- 270 (478)
.|..|+.+|-.|-..|.. .++ + .++++-||+.|=+|- ..++|-.-+-.|-+-+...||.+
T Consensus 178 ~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknit----cL~DAe~RL~ra~kgf~~syGenl~Rl~ 253 (568)
T KOG2561|consen 178 MYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNIT----CLPDAEVRLVRARKGFERSYGENLSRLR 253 (568)
T ss_pred HHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccc----cCChHHHHHHHHHHhhhhhhhhhhHhhh
Confidence 466666666555443321 111 1 345566776665543 23455555555554444444443
Q ss_pred ------ChH---HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Q 011759 271 ------SRH---IAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 307 (478)
Q Consensus 271 ------~r~---iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~ 307 (478)
+|. +-..|.--|.+++.+|+-++|.++++.|...+..
T Consensus 254 ~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~e 299 (568)
T KOG2561|consen 254 SLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLE 299 (568)
T ss_pred hccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 333 3345666799999999999999999999877643
No 398
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.41 E-value=95 Score=36.41 Aligned_cols=50 Identities=14% Similarity=0.239 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 011759 213 KMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTI 262 (478)
Q Consensus 213 E~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I 262 (478)
.||..|..|-..+..+...++.+|..-|+-....|+|++|...|-+++..
T Consensus 348 ~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 348 NLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 45688888887775555678999999999999999999999999998753
No 399
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=46.32 E-value=1.4e+02 Score=27.11 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 011759 349 TDKEAEIETLSGLCGDLEKKLEDLQQV 375 (478)
Q Consensus 349 ~~~~~Ei~elk~ll~dl~~KieDlk~~ 375 (478)
...+.|++||--||.|++.|+.-.|..
T Consensus 80 ~~~q~EldDLL~ll~Dle~K~~kyk~r 106 (136)
T PF04871_consen 80 KEAQSELDDLLVLLGDLEEKRKKYKER 106 (136)
T ss_pred HhhhhhHHHHHHHHHhHHHHHHHHHHH
Confidence 467899999999999999999998874
No 400
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=46.15 E-value=84 Score=33.61 Aligned_cols=71 Identities=20% Similarity=0.205 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCc-------hHHHHHHHHHHHHHHH
Q 011759 235 ILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKP-------QEAIPYCQKAISVCKS 307 (478)
Q Consensus 235 ~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~-------eeAl~~~ekAL~I~k~ 307 (478)
..-.||+.++-+++|+-|...|+.+.+=+. ...-...+|-++--+|+++.+.+.. +....+++.|+..+..
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~--~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~ 287 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFK--NDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLK 287 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHh--hchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHh
Confidence 456799999999999999999987765332 1234677899999999999988843 3666677777776665
No 401
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=46.13 E-value=4.1e+02 Score=28.55 Aligned_cols=31 Identities=16% Similarity=0.026 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 011759 65 FADELMEKGTNALKESDYGEAAECFSRALEI 95 (478)
Q Consensus 65 ~A~~L~~~G~~~~~~gdy~eAve~ys~Alei 95 (478)
....-..+.+.++..++|..|...|++++.-
T Consensus 129 ~~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r 159 (380)
T TIGR02710 129 EGNTEQGYARRAINAFDYLFAHARLETLLRR 159 (380)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 3455556778999999999999999999975
No 402
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=46.08 E-value=1.1e+02 Score=35.33 Aligned_cols=67 Identities=22% Similarity=0.279 Sum_probs=46.0
Q ss_pred chHHHHHHHHHHHHHhcCCHHHHHHHHHHHH------------------HHHHHhcCCCCh---HHHHHHHHHHHH----
Q 011759 230 MEKVDILSALAEVALEREDIETSLSDYQKAL------------------TILERMVEPDSR---HIAELNFRICLC---- 284 (478)
Q Consensus 230 ~~~Ad~~~~LGev~le~g~feeAl~dy~kAL------------------~I~~~llg~d~r---~iAea~~~LG~a---- 284 (478)
..+-+++.++|+.+.++-.++.|.++|.++- +..-..++++|+ .+|+.+-..|+|
T Consensus 793 ~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV 872 (1189)
T KOG2041|consen 793 EGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAV 872 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHH
Confidence 4567899999999999999999999998763 223334666764 356666666654
Q ss_pred --HHcCCCchHHHH
Q 011759 285 --LEIGSKPQEAIP 296 (478)
Q Consensus 285 --y~~~~~~eeAl~ 296 (478)
|.+.+..+.|+.
T Consensus 873 ~a~Lr~s~pkaAv~ 886 (1189)
T KOG2041|consen 873 EAYLRRSLPKAAVH 886 (1189)
T ss_pred HHHHhccCcHHHHH
Confidence 444555555543
No 403
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=45.58 E-value=5e+02 Score=31.98 Aligned_cols=58 Identities=19% Similarity=0.096 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHh------cCCCChHHHHHHHHHHHHHHcCCCchHHHH
Q 011759 238 ALAEVALEREDIETSLSDYQKALTILERM------VEPDSRHIAELNFRICLCLEIGSKPQEAIP 296 (478)
Q Consensus 238 ~LGev~le~g~feeAl~dy~kAL~I~~~l------lg~d~r~iAea~~~LG~ay~~~~~~eeAl~ 296 (478)
.-|..|...|+.++|+..|+.|+..++-+ .... -.+...-+.|..-+..++++-+|..
T Consensus 957 ~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L~e~~kh~eAa~ 1020 (1265)
T KOG1920|consen 957 EAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGK-DELVILAEELVSRLVEQRKHYEAAK 1020 (1265)
T ss_pred HHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHcccchhHHH
Confidence 34555666677777777776655554432 2221 2223223445555555555544433
No 404
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=45.09 E-value=2.2e+02 Score=31.39 Aligned_cols=11 Identities=18% Similarity=0.404 Sum_probs=7.6
Q ss_pred ccccccccccC
Q 011759 442 VGRGVKRVSMS 452 (478)
Q Consensus 442 vg~g~kr~~~~ 452 (478)
++.|+.+....
T Consensus 191 ~~~~~~~~~f~ 201 (475)
T PRK13729 191 VPNRIQRKTFT 201 (475)
T ss_pred CCCceeEEEee
Confidence 57777777754
No 405
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=45.03 E-value=2.5e+02 Score=32.05 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHhhH--------HHHHHHHHHHHHhhcCChhHHHHHHHhhhhccCCC
Q 011759 349 TDKEAEIETLSGLC--------GDLEKKLEDLQQVALFPKSILSEILGMASAKAKGD 397 (478)
Q Consensus 349 ~~~~~Ei~elk~ll--------~dl~~KieDlk~~~~~p~~~~~e~~~~~~~~~~~~ 397 (478)
..++..+.++++.| .+++.|+.+|+.. ...|+..+..+|+||
T Consensus 570 ~~l~~~l~~~~~wL~~~~~~~~~~~~~kl~eL~~~-------~~pi~~r~~~~~~~~ 619 (653)
T PTZ00009 570 ATIEKAIDEALEWLEKNQLAEKEEFEHKQKEVESV-------CNPIMTKMYQAAGGG 619 (653)
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH-------HHHHHHHHHhhccCC
Confidence 34445555555444 5667777777765 445666666777665
No 406
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.86 E-value=63 Score=36.65 Aligned_cols=87 Identities=18% Similarity=0.109 Sum_probs=55.7
Q ss_pred CcChHHHHHHH--HHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 011759 204 DESDLDLAWKM--LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRI 281 (478)
Q Consensus 204 d~ddle~AwE~--Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~L 281 (478)
++..|++|+.+ |++|+.|..+... ..-|..||+..+..++|.-|.++|.+|-.+---++-.....-++-+..|
T Consensus 640 ~d~rFelal~lgrl~iA~~la~e~~s-----~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~l 714 (794)
T KOG0276|consen 640 PDQRFELALKLGRLDIAFDLAVEANS-----EVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVL 714 (794)
T ss_pred hhhhhhhhhhcCcHHHHHHHHHhhcc-----hHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHH
Confidence 34566666654 6777777655432 3458899999999999999999999997765544433322233444455
Q ss_pred HHHHHcCCCchHHH
Q 011759 282 CLCLEIGSKPQEAI 295 (478)
Q Consensus 282 G~ay~~~~~~eeAl 295 (478)
|.....+|+++-|.
T Consensus 715 a~~~~~~g~~N~AF 728 (794)
T KOG0276|consen 715 ASLAKKQGKNNLAF 728 (794)
T ss_pred HHHHHhhcccchHH
Confidence 55545555544443
No 407
>PRK10869 recombination and repair protein; Provisional
Probab=44.82 E-value=2.6e+02 Score=31.34 Aligned_cols=25 Identities=12% Similarity=0.077 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHH
Q 011759 349 TDKEAEIETLSGLCGDLEKKLEDLQ 373 (478)
Q Consensus 349 ~~~~~Ei~elk~ll~dl~~KieDlk 373 (478)
..++.+++.++.-+-++-.+|...+
T Consensus 344 ~~Le~e~~~l~~~l~~~A~~LS~~R 368 (553)
T PRK10869 344 ETLALAVEKHHQQALETAQKLHQSR 368 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444
No 408
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=44.75 E-value=2.8e+02 Score=27.55 Aligned_cols=171 Identities=12% Similarity=0.079 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcC
Q 011759 60 EKTVEFADELMEKGTN--ALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEG 137 (478)
Q Consensus 60 ~~~l~~A~~L~~~G~~--~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~ 137 (478)
+....+.--+....++ .-+...|..+..++.++.--....+|+..+ .+.++..||.|+..+|+.+......+-
T Consensus 38 pa~r~k~~~~~~~~K~~g~~K~~~~p~~~~~Lg~~M~~~G~elg~dS~-~G~aL~~~G~A~~kla~~~~~~~~~i~---- 112 (223)
T cd07613 38 PASRAKLSMINTMSKIRGQEKGPGYPQAEALLAEAMLKFGRELGDECN-FGPALGDVGEAMRELSEVKDSLDMEVK---- 112 (223)
T ss_pred hhHHHHHHHHHHHHHhhccccCCCCCChHhHHHHHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q ss_pred CCCCCCCCccccccccCCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHH--
Q 011759 138 DSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKML-- 215 (478)
Q Consensus 138 e~~~~~~~de~~~~~~~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~L-- 215 (478)
.+|=.-|..+
T Consensus 113 --------------------------------------------------------------------~~fl~PL~~~~~ 124 (223)
T cd07613 113 --------------------------------------------------------------------QNFIDPLQNLHD 124 (223)
T ss_pred --------------------------------------------------------------------HHHHHHHHHHHH
Q ss_pred ------HHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----H
Q 011759 216 ------DVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLC----L 285 (478)
Q Consensus 216 ------e~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~a----y 285 (478)
..+|.-.+.. .+.+=-+-.+++.+. .+.++.|..-|.++-++.. ..+++|=.. +
T Consensus 125 ~dik~i~k~RKkLe~r---RLd~D~~K~r~~k~~--eeElr~A~~kFees~E~a~-----------~~M~n~l~~e~e~~ 188 (223)
T cd07613 125 KDLREIQHHLKKLEGR---RLDFDYKKKRQGKIP--DEELRQALEKFDESKEIAE-----------SSMFNLLEMDIEQV 188 (223)
T ss_pred HHHHHHHHHHHHHHHH---HHhHHHHHHhCCCCc--HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHcCchHH
Q ss_pred HcCCCchHH-HHHHHHHHHHHHHHHHHHHHHHHhh
Q 011759 286 EIGSKPQEA-IPYCQKAISVCKSRVQRLLNEVKSL 319 (478)
Q Consensus 286 ~~~~~~eeA-l~~~ekAL~I~k~rl~~l~~~l~~~ 319 (478)
.....|=+| +.||++|.+|+......|...+...
T Consensus 189 ~~L~~fveAQl~Yh~qa~eiL~~l~~~l~~~~~~a 223 (223)
T cd07613 189 SQLSALVQAQLEYHKQATQILQQVTVKLEDRIREA 223 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 409
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=43.94 E-value=1.7e+02 Score=27.95 Aligned_cols=70 Identities=16% Similarity=0.269 Sum_probs=49.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccccccccccccccccchhhhHHHHHHHHHHhhHHHHHHHHH
Q 011759 291 PQEAIPYCQKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKKLE 370 (478)
Q Consensus 291 ~eeAl~~~ekAL~I~k~rl~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Ei~elk~ll~dl~~Kie 370 (478)
..+-++.++.-++.+..+|+.|+..++...+ +.+ -=-.-.-++||+|+...|.-|+++|.
T Consensus 83 ~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad-----------~vv---------sYqll~hr~e~ee~~~~l~~le~~~~ 142 (175)
T PRK13182 83 SSVDFEQLEAQLNTITRRLDELERQLQQKAD-----------DVV---------SYQLLQHRREMEEMLERLQKLEARLK 142 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hhh---------hHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3456677777788888888888887765532 211 00123557999999999999999999
Q ss_pred HHHHhhcCCh
Q 011759 371 DLQQVALFPK 380 (478)
Q Consensus 371 Dlk~~~~~p~ 380 (478)
.++.....|.
T Consensus 143 ~~e~~~~~~~ 152 (175)
T PRK13182 143 KLEPIYITPD 152 (175)
T ss_pred HHHhhccCCc
Confidence 9887655553
No 410
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=43.21 E-value=79 Score=28.39 Aligned_cols=36 Identities=36% Similarity=0.509 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 011759 60 EKTVEFADELMEKGTNALKESDYGEAAECFSRALEI 95 (478)
Q Consensus 60 ~~~l~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei 95 (478)
.......-.-+.+|-.++..|++++|+.+|..|+.+
T Consensus 57 ~~~e~~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V 92 (121)
T PF02064_consen 57 EEMERFFLQQVQLGEQLLAQGDYEEAAEHFYNALKV 92 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 334445777789999999999999999999999987
No 411
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=42.83 E-value=2.1e+02 Score=30.39 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=45.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCC--CchHHHHHHHHHHHHH
Q 011759 237 SALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGS--KPQEAIPYCQKAISVC 305 (478)
Q Consensus 237 ~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~--~~eeAl~~~ekAL~I~ 305 (478)
...+.-.+..++|..|...|...+.- ++..-. -..+..|+.+|..-. +|.+|.+++++.+...
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~r----l~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~ 199 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRR----LPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRD 199 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh----CCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 33444556778999999999887652 333322 577888999998765 6789999999887654
No 412
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=42.74 E-value=27 Score=36.97 Aligned_cols=63 Identities=22% Similarity=0.189 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 011759 233 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 303 (478)
Q Consensus 233 Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~ 303 (478)
-.++.+++.+.+..++|..|+-.-..+|. ..|.-+.+||+.+.+|....++++|++.++.|..
T Consensus 275 ~~~~~n~~~~~lk~~~~~~a~~~~~~~~~--------~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~ 337 (372)
T KOG0546|consen 275 FSIRRNLAAVGLKVKGRGGARFRTNEALR--------DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQ 337 (372)
T ss_pred cccccchHHhcccccCCCcceeccccccc--------cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhc
Confidence 45777899999999999999877666665 5566789999999999999999999988877653
No 413
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=42.63 E-value=50 Score=36.92 Aligned_cols=81 Identities=17% Similarity=0.122 Sum_probs=57.3
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHH
Q 011759 218 ARAIAEKHWGDSMEKVDILSALAEVALER---EDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEA 294 (478)
Q Consensus 218 Ar~I~ek~l~~~~~~Ad~~~~LGev~le~---g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeA 294 (478)
++..|.+.....+..+.+|.+-+.+++.+ ++.-.|+.+...||+|-..++ .+||.|+.++...+++.+|
T Consensus 393 ~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~--------kah~~la~aL~el~r~~ea 464 (758)
T KOG1310|consen 393 AISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQ--------KAHFRLARALNELTRYLEA 464 (758)
T ss_pred HHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHH--------HHHHHHHHHHHHHhhHHHh
Confidence 34444444444455667777778887765 455667777777777665554 8999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 011759 295 IPYCQKAISVCK 306 (478)
Q Consensus 295 l~~~ekAL~I~k 306 (478)
+.+...+.-.+.
T Consensus 465 l~~~~alq~~~P 476 (758)
T KOG1310|consen 465 LSCHWALQMSFP 476 (758)
T ss_pred hhhHHHHhhcCc
Confidence 988766555444
No 414
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=42.49 E-value=56 Score=28.20 Aligned_cols=20 Identities=25% Similarity=0.542 Sum_probs=11.0
Q ss_pred CHHHHHHHHHHHHHHHHHhc
Q 011759 248 DIETSLSDYQKALTILERMV 267 (478)
Q Consensus 248 ~feeAl~dy~kAL~I~~~ll 267 (478)
.+...+..|..+++....+-
T Consensus 14 ~l~~~~~e~~~~~~~l~~l~ 33 (120)
T PF02996_consen 14 QLEEQIEEYEEAKETLEELK 33 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34455556666666655543
No 415
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=42.43 E-value=1.1e+02 Score=24.45 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHH
Q 011759 348 LTDKEAEIETLSGLCGDLEKKLEDLQ 373 (478)
Q Consensus 348 ~~~~~~Ei~elk~ll~dl~~KieDlk 373 (478)
+..-+++|..|+..|.-|..||.++.
T Consensus 27 v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 27 VTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455666666666666666666665
No 416
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.37 E-value=1.5e+02 Score=31.52 Aligned_cols=77 Identities=17% Similarity=0.045 Sum_probs=51.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHh-------------------------cCCCChHHHHHHHHHHHHHHcCCCchHH
Q 011759 240 AEVALEREDIETSLSDYQKALTILERM-------------------------VEPDSRHIAELNFRICLCLEIGSKPQEA 294 (478)
Q Consensus 240 Gev~le~g~feeAl~dy~kAL~I~~~l-------------------------lg~d~r~iAea~~~LG~ay~~~~~~eeA 294 (478)
|.+++-.++|.+....|..+=.-.+.- |++..-....+|+.+|+-|....+++.|
T Consensus 65 Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE~~~~n~YkaLNYm~~nD~~~A 144 (449)
T COG3014 65 GLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKALNYMLLNDSAKA 144 (449)
T ss_pred hHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHHHHHHHHHHHhhHHHhcchhhh
Confidence 666666677766666665543333221 3333445667899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011759 295 IPYCQKAISVCKSRVQRLLNEV 316 (478)
Q Consensus 295 l~~~ekAL~I~k~rl~~l~~~l 316 (478)
+--|.||....++.-+.-.+++
T Consensus 145 rVEfnRan~rQ~~AKe~~~~ei 166 (449)
T COG3014 145 RVEFNRANERQRRAKEFYYEEV 166 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988766444333333
No 417
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=42.09 E-value=96 Score=27.25 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChh
Q 011759 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALE 106 (478)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe 106 (478)
.+.+...+.++..++..|+|+.+...+.+|..|..+...-.+++
T Consensus 26 yd~ai~~l~~a~~a~~~~~~~~~~~~l~ka~~Ii~~L~~~Ld~e 69 (122)
T PF02561_consen 26 YDGAIEFLKQAKEAIEQGDIEEKNEALQKAQDIITELQSSLDFE 69 (122)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 45688889999999999999999999999999999887655444
No 418
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=41.46 E-value=2.6e+02 Score=24.98 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=17.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHh
Q 011759 352 EAEIETLSGLCGDLEKKLEDLQQV 375 (478)
Q Consensus 352 ~~Ei~elk~ll~dl~~KieDlk~~ 375 (478)
+.+-..|+.=|.+++.||+||...
T Consensus 97 ~~qk~~le~e~~~~~~r~~dL~~Q 120 (132)
T PF07926_consen 97 EEQKEQLEKELSELEQRIEDLNEQ 120 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777778888899988764
No 419
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=41.45 E-value=1.1e+02 Score=34.24 Aligned_cols=50 Identities=22% Similarity=0.292 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011759 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (478)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (478)
+.++..+..|.-.+.......|+..|++++.- .|....+|-++..+|+..
T Consensus 372 e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkR 421 (758)
T KOG1310|consen 372 ENIEKFKTEGNDGLYESIVSGAISHYSRAIQY--------VPDAIYLLENRAAALMKR 421 (758)
T ss_pred HHHHHHHhhccchhhhHHHHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhh
Confidence 45777788898889999999999999999987 688888999999888865
No 420
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=41.39 E-value=95 Score=29.08 Aligned_cols=71 Identities=14% Similarity=0.099 Sum_probs=46.3
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 285 (478)
++++.+-.+|+-.|++ .|+.......-|.+++.+|+|.+|+..|+.. .. ..+....+---++.|+
T Consensus 24 ~d~~D~e~lLdALrvL-------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l-------~~-~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 24 ADPYDAQAMLDALRVL-------RPNLKELDMFDGWLLIARGNYDEAARILREL-------LS-SAGAPPYGKALLALCL 88 (153)
T ss_pred CCHHHHHHHHHHHHHh-------CCCccccchhHHHHHHHcCCHHHHHHHHHhh-------hc-cCCCchHHHHHHHHHH
Confidence 4455566666666654 4677888899999999999999998766543 22 1111122223466777
Q ss_pred HcCCCc
Q 011759 286 EIGSKP 291 (478)
Q Consensus 286 ~~~~~~ 291 (478)
...++.
T Consensus 89 ~al~Dp 94 (153)
T TIGR02561 89 NAKGDA 94 (153)
T ss_pred HhcCCh
Confidence 777765
No 421
>PRK04654 sec-independent translocase; Provisional
Probab=41.21 E-value=3.1e+02 Score=27.07 Aligned_cols=29 Identities=7% Similarity=0.123 Sum_probs=17.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011759 289 SKPQEAIPYCQKAISVCKSRVQRLLNEVK 317 (478)
Q Consensus 289 ~~~eeAl~~~ekAL~I~k~rl~~l~~~l~ 317 (478)
.++-++....-+.+.-++..+...++++.
T Consensus 23 erLPe~aRtlGk~irk~R~~~~~vk~El~ 51 (214)
T PRK04654 23 ERLPKAARFAGLWVRRARMQWDSVKQELE 51 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666666666666666666555555443
No 422
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=41.20 E-value=3.9e+02 Score=26.88 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=22.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011759 291 PQEAIPYCQKAISVCKSRVQRLLNEVKSL 319 (478)
Q Consensus 291 ~eeAl~~~ekAL~I~k~rl~~l~~~l~~~ 319 (478)
-...+..++..+.+.+.++..|+.+|..+
T Consensus 87 ~~~e~~aL~~E~~~ak~r~~~le~el~~l 115 (239)
T COG1579 87 DERELRALNIEIQIAKERINSLEDELAEL 115 (239)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778888888888888887777655
No 423
>PF12063 DUF3543: Domain of unknown function (DUF3543); InterPro: IPR022708 This domain belonging to serine/threonine-protein kinases is functionally uncharacterised. This domain is found in eukaryotes. It is typically between 217 to 291 amino acids in length and is found associated with PF00069 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0004674 protein serine/threonine kinase activity
Probab=41.13 E-value=3.8e+02 Score=26.74 Aligned_cols=100 Identities=22% Similarity=0.255 Sum_probs=59.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHh------cCCCChHHHH--------HHHHHHH-------HHHcCC-CchHHHHHHH
Q 011759 242 VALEREDIETSLSDYQKALTILERM------VEPDSRHIAE--------LNFRICL-------CLEIGS-KPQEAIPYCQ 299 (478)
Q Consensus 242 v~le~g~feeAl~dy~kAL~I~~~l------lg~d~r~iAe--------a~~~LG~-------ay~~~~-~~eeAl~~~e 299 (478)
|.+-+++|.+.+ ++|-.++.++ ++.+|+.+.. ..|.-++ +-+..| ++......|+
T Consensus 114 Vqwlr~rfnecl---ekae~lr~~l~~~~~~l~~~~~~~~~~~~itAekLiYdrALemsr~AA~~El~g~~~~~ce~~Y~ 190 (238)
T PF12063_consen 114 VQWLRERFNECL---EKAEFLRLRLQEAQKQLPDDHPSMPSSSGITAEKLIYDRALEMSRTAAVDELFGENLEGCEQRYE 190 (238)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHhhCccccccccCccccCHHHHHHHHHHHHHHHHHHHHHhCcCHhHHHHHHH
Confidence 445566676554 4443344433 6666644333 4444433 445667 8999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCccccccccccccccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHH
Q 011759 300 KAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKKLEDLQQ 374 (478)
Q Consensus 300 kAL~I~k~rl~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Ei~elk~ll~dl~~KieDlk~ 374 (478)
+|+-+++.-+... .... ....+ ...+.-|+..+.=|+.||.-|+.
T Consensus 191 tA~~lLe~Ll~~~-----~~~~------~~~~~-------------------~~Dr~~i~k~i~sI~~RL~~Lr~ 235 (238)
T PF12063_consen 191 TAIWLLEALLDDD-----DLEE------ENPLD-------------------EEDREIIKKYIDSIENRLSALRK 235 (238)
T ss_pred HHHHHHHHHHhHh-----hccc------cCCCC-------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988887765 0000 00001 13444577788888888887775
No 424
>PRK11637 AmiB activator; Provisional
Probab=40.88 E-value=4.8e+02 Score=27.89 Aligned_cols=7 Identities=29% Similarity=0.762 Sum_probs=3.1
Q ss_pred CCCCCCC
Q 011759 418 GDFDSPT 424 (478)
Q Consensus 418 ~gf~sp~ 424 (478)
++|.++.
T Consensus 298 ~~~~~~~ 304 (428)
T PRK11637 298 GGLGRPR 304 (428)
T ss_pred CCccCCC
Confidence 3454443
No 425
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=40.72 E-value=4.7e+02 Score=27.78 Aligned_cols=43 Identities=14% Similarity=0.209 Sum_probs=33.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhCCCChh-----HHHHHHHHHHHHHhh
Q 011759 79 ESDYGEAAECFSRALEIRVSHYGELALE-----CVNAYYQYGRALLYK 121 (478)
Q Consensus 79 ~gdy~eAve~ys~Alei~~~~~Ge~~pe-----~A~~y~~YG~ALl~~ 121 (478)
..+++.-+.++.|=++++..+..+.+|. |-.++|-+|.++..+
T Consensus 188 E~~~~r~~kmhkRR~d~Le~~~~~Ln~~~y~~~~rql~fElae~~~~i 235 (371)
T PF12309_consen 188 EEDPDRQIKMHKRRADLLEPLLKELNPQYYLNLCRQLWFELAEIYSEI 235 (371)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899999999999999999988886 345566666666554
No 426
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=40.69 E-value=93 Score=33.57 Aligned_cols=34 Identities=18% Similarity=-0.055 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 011759 273 HIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK 306 (478)
Q Consensus 273 ~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k 306 (478)
.-|.+||.+|+.+...+++.+||.+++.|+..++
T Consensus 294 ~~A~A~~~~g~d~~e~~k~GeaIa~L~~A~~~L~ 327 (413)
T cd09245 294 ARALACKFLGIDAGENGKVGEAIGWLRAAKKELE 327 (413)
T ss_pred HHHHHHHHHHHhhHhcCCHHHHHHHHHHHHHHHH
Confidence 3488999999999999999999999999998543
No 427
>PRK10869 recombination and repair protein; Provisional
Probab=39.98 E-value=2.7e+02 Score=31.13 Aligned_cols=39 Identities=8% Similarity=0.043 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 011759 276 ELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLLN 314 (478)
Q Consensus 276 ea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~rl~~l~~ 314 (478)
.++|.|..+.....+|-+.+.+-..-|+-++.||..|..
T Consensus 272 ~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~ 310 (553)
T PRK10869 272 EALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQIS 310 (553)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Confidence 455555555555544444444444445555666665544
No 428
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.72 E-value=1.7e+02 Score=29.93 Aligned_cols=62 Identities=15% Similarity=0.240 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccccccccccccccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Q 011759 292 QEAIPYCQKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKKLED 371 (478)
Q Consensus 292 eeAl~~~ekAL~I~k~rl~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Ei~elk~ll~dl~~KieD 371 (478)
+..+...++...=+...|..|.+.+..... .....+++|..++.-|..++.+|.+
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~-------------------------k~~~~~~~i~~~~~eik~l~~eI~~ 91 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQS-------------------------KIDELQKEIDQSKAEIKKLQKEIAE 91 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555666666555554432 2335566677777777777777777
Q ss_pred HHHhhcC
Q 011759 372 LQQVALF 378 (478)
Q Consensus 372 lk~~~~~ 378 (478)
++.-+..
T Consensus 92 ~~~~I~~ 98 (265)
T COG3883 92 LKENIVE 98 (265)
T ss_pred HHHHHHH
Confidence 7664443
No 429
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=39.02 E-value=27 Score=29.37 Aligned_cols=75 Identities=16% Similarity=0.250 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHH
Q 011759 234 DILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLL 313 (478)
Q Consensus 234 d~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~rl~~l~ 313 (478)
.....|..+......+..-+..++-++.-...+-+ + ..+|..+|.||... ..++++.+.+.-++.++..|..|+
T Consensus 9 ~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~-~----~~~y~~vG~~fv~~-~~~~~~~~L~~~~~~~~~~i~~l~ 82 (106)
T PF01920_consen 9 ELNQQLQQLEQQIQQLERQLRELELTLEELEKLDD-D----RKVYKSVGKMFVKQ-DKEEAIEELEERIEKLEKEIKKLE 82 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSST-T-----EEEEEETTEEEEE-EHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-c----chhHHHHhHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666677777777777777766533 2 34566677776555 556666666555544444444443
Q ss_pred H
Q 011759 314 N 314 (478)
Q Consensus 314 ~ 314 (478)
.
T Consensus 83 ~ 83 (106)
T PF01920_consen 83 K 83 (106)
T ss_dssp H
T ss_pred H
Confidence 3
No 430
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=38.99 E-value=4.5e+02 Score=27.00 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=16.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHH
Q 011759 352 EAEIETLSGLCGDLEKKLEDLQ 373 (478)
Q Consensus 352 ~~Ei~elk~ll~dl~~KieDlk 373 (478)
+.||++|-.=|-+|+.++..|+
T Consensus 271 r~evd~l~k~l~eLrre~r~Lk 292 (293)
T PF09712_consen 271 RSEVDELYKRLHELRREVRALK 292 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4688888777777777777665
No 431
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=38.64 E-value=1.8e+02 Score=26.96 Aligned_cols=57 Identities=30% Similarity=0.346 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccccccccccccccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHH
Q 011759 295 IPYCQKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKKLEDLQQ 374 (478)
Q Consensus 295 l~~~ekAL~I~k~rl~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Ei~elk~ll~dl~~KieDlk~ 374 (478)
+.-++.-+..++..+..|+.+|..+...+ +..++...|..|+.=+..|+.||+.|+.
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~-----------------------t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEP-----------------------TNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444445555555555555555554311 2247788999999999999999999997
No 432
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=38.54 E-value=3.3e+02 Score=26.69 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=18.1
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHH
Q 011759 347 LLTDKEAEIETLSGLCGDLEKKL 369 (478)
Q Consensus 347 ~~~~~~~Ei~elk~ll~dl~~Ki 369 (478)
.+....+|+++|..|..||-.|+
T Consensus 183 ~LeQK~kEn~ELtkICDeLI~k~ 205 (207)
T PF05010_consen 183 SLEQKTKENEELTKICDELISKM 205 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567788889998888887775
No 433
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=37.85 E-value=1.2e+02 Score=33.12 Aligned_cols=66 Identities=14% Similarity=0.254 Sum_probs=48.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhc--C----CCChHH----HHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 011759 239 LAEVALEREDIETSLSDYQKALTILERMV--E----PDSRHI----AELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 239 LGev~le~g~feeAl~dy~kAL~I~~~ll--g----~d~r~i----Aea~~~LG~ay~~~~~~eeAl~~~ekAL~I 304 (478)
=|.-++.+++|..|+.-|+.+|++..+-. + +..-.| ..+--+|.+||..+++.+-|+.|-.++|..
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l 257 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL 257 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc
Confidence 34455777888888888999998888642 1 122222 234567999999999999999998887753
No 434
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=37.59 E-value=54 Score=20.49 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011759 235 ILSALAEVALEREDIETSLSDYQKAL 260 (478)
Q Consensus 235 ~~~~LGev~le~g~feeAl~dy~kAL 260 (478)
+|+.|=..|...|++++|...|++-.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHh
Confidence 57888899999999999999998754
No 435
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=37.18 E-value=42 Score=35.24 Aligned_cols=52 Identities=15% Similarity=0.232 Sum_probs=26.3
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 011759 245 EREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 245 e~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I 304 (478)
..|+.++|...|+.||++.... .+++..+|...+...+.-+|-.||-+||.|
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~--------p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTN--------PQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCC--------HHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 3455555555555555544322 144455555555555555555555555544
No 436
>PF05168 HEPN: HEPN domain; InterPro: IPR007842 The HEPN (higher eukaryotes and prokaryotes nucleotide-binding) domain is a region of 110 residues found in the C terminus of sacsin, a chaperonin implicated in an early-onset neurodegenerative disease in human, and in many bacterial and archeabacterial proteins. There are three classes of proteins with HEPN domain: Single-domain HEPN proteins found in many bacteria. Two-domain proteins with N-terminal nucleotidyltransferase (NT) and C- terminal HEPN domains. This N-terminal NT domain belongs to a large family of NTs, which includes several classes of enzymes that are responsible for some types of bacterial resistance to aminoglycosides. These enzymes deactivate various antibiotics by transferring a nucleotidyl group to the drug. A multidomain sacsin protein in genomes of fish and mammals. The HEPN domain is located at the C terminus of the protein, directly after the DnaJ domain (see PDOC00553 from PROSITEDOC). The crystal structure of the HEPN domain from the TM0613 protein of Thermotoga maritima indicates that it is structurally similar to the C-terminal all- alpha-helical domain of kanamycin nucleotidyltransferases (KNTases). It is composed of five alpha helices, three of which form an up- and-down helical bundle, with a pair of short helices on the side. The distant structural similarity suggests that the HEPN domain might be involved in nucleotide binding [].; PDB: 1O3U_A 1WOL_A 3O10_D 2HSB_A 1UFB_A.
Probab=36.93 E-value=1e+02 Score=25.58 Aligned_cols=36 Identities=28% Similarity=0.211 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 011759 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRV 97 (478)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~ 97 (478)
-+..|...+..+..++..|+|..|+-+..+|++...
T Consensus 4 ~~~~A~~~l~~A~~~~~~~~~~~a~~~a~~a~e~~l 39 (118)
T PF05168_consen 4 WLEKAEEDLKAAEILLEEGDYNWAVFHAYQAVEKAL 39 (118)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 357799999999999999999999999999999753
No 437
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=36.92 E-value=44 Score=26.34 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHhhcCChhHHHHHHHhhhh
Q 011759 349 TDKEAEIETLSGLCGDLEKKLEDLQQVALFPKSILSEILGMASA 392 (478)
Q Consensus 349 ~~~~~Ei~elk~ll~dl~~KieDlk~~~~~p~~~~~e~~~~~~~ 392 (478)
+..+.|++-||+-|.||+.|+..|+. -+.++|..++
T Consensus 10 ~AVrEEVevLK~~I~eL~~~n~~Le~--------EN~~Lk~~~~ 45 (59)
T PF01166_consen 10 YAVREEVEVLKEQIAELEERNSQLEE--------ENNLLKQNAS 45 (59)
T ss_dssp GT-TTSHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhcCC
Confidence 45567889999999999999999987 3567775553
No 438
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=36.42 E-value=3.6e+02 Score=25.97 Aligned_cols=26 Identities=15% Similarity=0.369 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHH
Q 011759 349 TDKEAEIETLSGLCGDLEKKLEDLQQ 374 (478)
Q Consensus 349 ~~~~~Ei~elk~ll~dl~~KieDlk~ 374 (478)
..++.+|.+|+..+...++||.-+|.
T Consensus 119 eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 119 EEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555554
No 439
>PF12854 PPR_1: PPR repeat
Probab=36.22 E-value=52 Score=22.31 Aligned_cols=25 Identities=8% Similarity=-0.088 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHH
Q 011759 276 ELNFRICLCLEIGSKPQEAIPYCQK 300 (478)
Q Consensus 276 ea~~~LG~ay~~~~~~eeAl~~~ek 300 (478)
.+|.-|=.+|...|++++|+..|++
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 5788899999999999999998875
No 440
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=36.15 E-value=66 Score=31.35 Aligned_cols=62 Identities=15% Similarity=0.028 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHc
Q 011759 211 AWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEI 287 (478)
Q Consensus 211 AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~ 287 (478)
|..+|.+|..+ .|.....|+-||.++...+++=+|+=+|-+||-.+.-. ..+..||...+..
T Consensus 1 A~~~Y~~A~~l-------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf--------~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL-------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPF--------PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH--------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB----------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh-------CCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCc--------HHHHHHHHHHHHH
Confidence 34556666655 35678899999999999999999999999998554221 3555666666665
No 441
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=36.11 E-value=6.1e+02 Score=30.48 Aligned_cols=56 Identities=18% Similarity=0.218 Sum_probs=26.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCC----CchHHHHHHHHHHHHHHHH
Q 011759 246 REDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGS----KPQEAIPYCQKAISVCKSR 308 (478)
Q Consensus 246 ~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~----~~eeAl~~~ekAL~I~k~r 308 (478)
+++-+.=+..++++++++..-+ .+...++-++-..++ +++.++++|+..++-....
T Consensus 957 le~re~eikeLkk~aKmkqeel-------Se~qvRldmaEkkLss~~k~~~h~v~~~~ek~ee~~a~ 1016 (1243)
T KOG0971|consen 957 LEDRETEIKELKKSAKMKQEEL-------SEAQVRLDLAEKKLSSAAKDADHRVEKVQEKLEETQAL 1016 (1243)
T ss_pred HHhhHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHH
Confidence 3444444555555555554433 344444444444444 4444555555444443333
No 442
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=35.71 E-value=1.4e+02 Score=31.88 Aligned_cols=73 Identities=18% Similarity=0.182 Sum_probs=46.1
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALER---------EDIETSLSDYQKALTILERMVEPDSRHIAE 276 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~---------g~feeAl~dy~kAL~I~~~llg~d~r~iAe 276 (478)
+|.+.|+.++..++ ......-.++|..+|.||-+. +.+++|+..|+++..+....+
T Consensus 196 gdre~Al~il~~~l------~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y--------- 260 (374)
T PF13281_consen 196 GDREKALQILLPVL------ESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY--------- 260 (374)
T ss_pred CCHHHHHHHHHHHH------hccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc---------
Confidence 45666665544331 112234567888888887543 457888888888888885443
Q ss_pred HHHHHHHHHHcCCCchH
Q 011759 277 LNFRICLCLEIGSKPQE 293 (478)
Q Consensus 277 a~~~LG~ay~~~~~~ee 293 (478)
.=.|++..+...|...+
T Consensus 261 ~GIN~AtLL~~~g~~~~ 277 (374)
T PF13281_consen 261 SGINAATLLMLAGHDFE 277 (374)
T ss_pred chHHHHHHHHHcCCccc
Confidence 23467777777776433
No 443
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=35.49 E-value=4.9e+02 Score=27.88 Aligned_cols=36 Identities=17% Similarity=-0.015 Sum_probs=26.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011759 79 ESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (478)
Q Consensus 79 ~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (478)
.|+.++|...+..++.- ......+.|..+|+++-.+
T Consensus 195 ~gdre~Al~il~~~l~~-------~~~~~~d~~gL~GRIyKD~ 230 (374)
T PF13281_consen 195 PGDREKALQILLPVLES-------DENPDPDTLGLLGRIYKDL 230 (374)
T ss_pred CCCHHHHHHHHHHHHhc-------cCCCChHHHHHHHHHHHHH
Confidence 78888888888777543 2344556999999999766
No 444
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=35.44 E-value=56 Score=39.89 Aligned_cols=55 Identities=24% Similarity=0.280 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcC
Q 011759 232 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIG 288 (478)
Q Consensus 232 ~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~ 288 (478)
.++..-.+|+.++-.|++.+|+.+|..|+.+.+..- |+.=+|-++-.++.|+...
T Consensus 241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~--D~lW~a~alEg~~~~~~l~ 295 (1185)
T PF08626_consen 241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSN--DYLWLASALEGIAVCLLLL 295 (1185)
T ss_pred hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcC--cHhhhHHHHHHHHHHHHHH
Confidence 466778899999999999999999999999999864 6666888888887776543
No 445
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.43 E-value=1.3e+02 Score=27.84 Aligned_cols=37 Identities=22% Similarity=0.323 Sum_probs=31.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 011759 59 REKTVEFADELMEKGTNALKESDYGEAAECFSRALEI 95 (478)
Q Consensus 59 ~~~~l~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei 95 (478)
+.......-+-+.+|-.++.+|++++++++|..|+-+
T Consensus 74 ~~~~E~~Fmqqv~lGE~L~~qg~~e~ga~h~~nAi~v 110 (143)
T KOG4056|consen 74 AEEVEKFFMQQVQLGEELLAQGNEEEGAEHLANAIVV 110 (143)
T ss_pred HHHHHHHHHHHHHhHHHHHHccCHHHHHHHHHHHHhh
Confidence 3444556778889999999999999999999999987
No 446
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=35.43 E-value=4.5e+02 Score=28.46 Aligned_cols=39 Identities=13% Similarity=0.109 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHc
Q 011759 249 IETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEI 287 (478)
Q Consensus 249 feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~ 287 (478)
+..-+...+.-+......|+++||.+-.+.-+|......
T Consensus 252 l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~ 290 (498)
T TIGR03007 252 LDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQ 290 (498)
T ss_pred hHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHH
Confidence 344455666666666677888888887777777666554
No 447
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=34.79 E-value=75 Score=20.06 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011759 235 ILSALAEVALEREDIETSLSDYQKAL 260 (478)
Q Consensus 235 ~~~~LGev~le~g~feeAl~dy~kAL 260 (478)
+|+.|=..|...|++++|+..|.+-.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 57788888999999999999998753
No 448
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=34.65 E-value=1.3e+02 Score=26.17 Aligned_cols=37 Identities=22% Similarity=0.199 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 011759 231 EKVDILSALAEVALEREDIETSLSDYQKALTILERMVE 268 (478)
Q Consensus 231 ~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg 268 (478)
+.|......|.++...|+.++|--.|.+.+.|. ..++
T Consensus 36 rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~-~ki~ 72 (115)
T PF08969_consen 36 RSANKLLREAEEYRQEGDEEQAYVLYMRYLTLV-EKIP 72 (115)
T ss_dssp HHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-CCHC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHhh
Confidence 356677788999999999999999999999999 5554
No 449
>PHA02562 46 endonuclease subunit; Provisional
Probab=34.57 E-value=3.8e+02 Score=29.36 Aligned_cols=9 Identities=0% Similarity=-0.123 Sum_probs=5.0
Q ss_pred HHHHHHhhC
Q 011759 93 LEIRVSHYG 101 (478)
Q Consensus 93 lei~~~~~G 101 (478)
.+++..++|
T Consensus 153 ~~il~~l~~ 161 (562)
T PHA02562 153 RKLVEDLLD 161 (562)
T ss_pred HHHHHHHhC
Confidence 455555565
No 450
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=34.19 E-value=1e+02 Score=32.52 Aligned_cols=52 Identities=17% Similarity=0.121 Sum_probs=39.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHH
Q 011759 59 REKTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALL 119 (478)
Q Consensus 59 ~~~~l~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl 119 (478)
+.+. .+|.--+..+-..+..|+.++|..+|..|+.+ +|.+.+++..||..+-
T Consensus 110 pa~~-kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E 161 (472)
T KOG3824|consen 110 PAKV-KEAILALKAAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFRE 161 (472)
T ss_pred chhh-HHHHHHHHHHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHH
Confidence 3344 34444456666789999999999999999998 6777778888887654
No 451
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=33.63 E-value=1.8e+02 Score=26.63 Aligned_cols=45 Identities=16% Similarity=0.068 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHH
Q 011759 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYY 112 (478)
Q Consensus 68 ~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~ 112 (478)
.++.+|..++..+++-.++-+|++|+.+..++.-....+.-+.++
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~ 47 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLT 47 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHH
Confidence 466789999999999999999999999988884334445544444
No 452
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=33.57 E-value=3.4e+02 Score=26.97 Aligned_cols=23 Identities=4% Similarity=0.153 Sum_probs=16.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHH
Q 011759 290 KPQEAIPYCQKAISVCKSRVQRL 312 (478)
Q Consensus 290 ~~eeAl~~~ekAL~I~k~rl~~l 312 (478)
.++.|..-|+.+.+....++..+
T Consensus 158 E~~~A~~kfees~E~a~~~M~n~ 180 (223)
T cd07615 158 EIRQAVEKFEESKELAERSMFNF 180 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777888888877777665
No 453
>PF13041 PPR_2: PPR repeat family
Probab=33.24 E-value=87 Score=22.52 Aligned_cols=27 Identities=11% Similarity=0.069 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011759 234 DILSALAEVALEREDIETSLSDYQKAL 260 (478)
Q Consensus 234 d~~~~LGev~le~g~feeAl~dy~kAL 260 (478)
-+|+.|=..+.+.|++++|+..|++-.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~ 30 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMK 30 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 478999999999999999999998765
No 454
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.15 E-value=3e+02 Score=30.02 Aligned_cols=63 Identities=14% Similarity=0.220 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHH
Q 011759 232 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQ 299 (478)
Q Consensus 232 ~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~e 299 (478)
+=..|..||+.|+..|+++.|+..|-++-..+.. .-+++..+.|+=.+--+.++|-.=+.+-.
T Consensus 149 iRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~ 211 (466)
T KOG0686|consen 149 IRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYIS 211 (466)
T ss_pred HHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHH
Confidence 4568999999999999999999999997666543 34566777776666666676643333333
No 455
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=33.10 E-value=1e+02 Score=26.17 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 011759 61 KTVEFADELMEKGTNALKESDYGEAAECFSRALEI 95 (478)
Q Consensus 61 ~~l~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei 95 (478)
.-+..|...+..+...+..|+|..|..+..+|...
T Consensus 40 ~el~~A~~~L~~A~~a~~~~~y~~A~~~A~~A~~~ 74 (103)
T PF14346_consen 40 VELKEAREKLQRAKAALDDGDYERARRLAEQAQAD 74 (103)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999999988888765
No 456
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.07 E-value=77 Score=34.33 Aligned_cols=93 Identities=19% Similarity=0.091 Sum_probs=58.5
Q ss_pred CcChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 011759 204 DESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICL 283 (478)
Q Consensus 204 d~ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ 283 (478)
+-++|+.|+..|-++|.-+- ....+++.+.++=.|++..++|-.-..+-.+|-.--........-..+.+..--|+
T Consensus 162 ~cG~l~~Alr~YsR~RdYCT----s~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agL 237 (466)
T KOG0686|consen 162 DCGQLDNALRCYSRARDYCT----SAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCAAGL 237 (466)
T ss_pred HhccHHHHHhhhhhhhhhhc----chHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHH
Confidence 34555555555555554332 23568999999999999999999888887777665210000000001234455677
Q ss_pred HHHcCCCchHHHHHHHH
Q 011759 284 CLEIGSKPQEAIPYCQK 300 (478)
Q Consensus 284 ay~~~~~~eeAl~~~ek 300 (478)
+...+++|+.|+.||-.
T Consensus 238 a~L~lkkyk~aa~~fL~ 254 (466)
T KOG0686|consen 238 ANLLLKKYKSAAKYFLL 254 (466)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 77777789888888754
No 457
>PRK04406 hypothetical protein; Provisional
Probab=32.81 E-value=2.1e+02 Score=23.43 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCccccccccccccccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHhhcC
Q 011759 299 QKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKKLEDLQQVALF 378 (478)
Q Consensus 299 ekAL~I~k~rl~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Ei~elk~ll~dl~~KieDlk~~~~~ 378 (478)
++.+..+..||..|+.++.-+ +.-|++|..+|..-+..|..|+..+..
T Consensus 3 ~~~~~~le~Ri~~LE~~lAfQ--------------------------------E~tIe~LN~~v~~Qq~~I~~L~~ql~~ 50 (75)
T PRK04406 3 EKTIEQLEERINDLECQLAFQ--------------------------------EQTIEELNDALSQQQLLITKMQDQMKY 50 (75)
T ss_pred hhhHHHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ChhHHHHHHHhhhhccCCCCCCc
Q 011759 379 PKSILSEILGMASAKAKGDEKSS 401 (478)
Q Consensus 379 p~~~~~e~~~~~~~~~~~~~~~~ 401 (478)
=...+.++-......+.....+|
T Consensus 51 L~~rl~~~~~~~~~~~~~e~pPP 73 (75)
T PRK04406 51 VVGKVKNMDSSNLADPAEETPPP 73 (75)
T ss_pred HHHHHHhhccccCCCCCCCCCcc
No 458
>PRK05685 fliS flagellar protein FliS; Validated
Probab=32.78 E-value=2.4e+02 Score=25.37 Aligned_cols=42 Identities=21% Similarity=0.225 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCC
Q 011759 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELA 104 (478)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~ 104 (478)
.+.+...+.++..++..++|+++.....+|..|+.+..+-..
T Consensus 32 ydgai~~l~~A~~ai~~~~~~~~~~~l~ka~~Ii~eL~~sLd 73 (132)
T PRK05685 32 YEGALSFLAQAKLAIEQGDIEAKGEYLSKAINIINGLRNSLD 73 (132)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcC
Confidence 456888888899999999999999999999999988877544
No 459
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=32.69 E-value=4.8e+02 Score=25.44 Aligned_cols=30 Identities=17% Similarity=0.268 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 011759 347 LLTDKEAEIETLSGLCGDLEKKLEDLQQVA 376 (478)
Q Consensus 347 ~~~~~~~Ei~elk~ll~dl~~KieDlk~~~ 376 (478)
.+..++.||.+.+.-....+.+.+.+...+
T Consensus 150 K~~~~~~ev~~~e~~~~~a~~~fe~is~~~ 179 (224)
T cd07623 150 KLDQAQQEIKEWEAKVDRGQKEFEEISKTI 179 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777766666666666665543
No 460
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=32.64 E-value=3e+02 Score=23.14 Aligned_cols=61 Identities=10% Similarity=0.134 Sum_probs=38.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccccccccccccccccchhhhHHHHHHHHHHhhHHHHHHHHH
Q 011759 291 PQEAIPYCQKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKKLE 370 (478)
Q Consensus 291 ~eeAl~~~ekAL~I~k~rl~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Ei~elk~ll~dl~~Kie 370 (478)
+.....-++.+|.-++..|..|+..+.-... + +..+---..||..=+..|.+++.+|.
T Consensus 37 ~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~----------n------------p~kF~l~~~Ei~~Rr~fv~~~~~~i~ 94 (97)
T PF09177_consen 37 LKWLKRELRNALQSIEWDLEDLEEAVRIVEK----------N------------PSKFNLSEEEISRRRQFVSAIRNQIK 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------C------------HHHHT-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------C------------ccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 3445556666676667777777666654321 0 11222345788888888888888888
Q ss_pred HHH
Q 011759 371 DLQ 373 (478)
Q Consensus 371 Dlk 373 (478)
.+|
T Consensus 95 ~~k 97 (97)
T PF09177_consen 95 QMK 97 (97)
T ss_dssp HHH
T ss_pred hcC
Confidence 775
No 461
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=32.59 E-value=31 Score=37.36 Aligned_cols=26 Identities=8% Similarity=0.129 Sum_probs=24.0
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHH
Q 011759 279 FRICLCLEIGSKPQEAIPYCQKAISV 304 (478)
Q Consensus 279 ~~LG~ay~~~~~~eeAl~~~ekAL~I 304 (478)
|.+|.+|.++++|.+|+..|-..|--
T Consensus 276 Y~VGFayLmmrryadai~~F~niLly 301 (525)
T KOG3677|consen 276 YQVGFAYLMMRRYADAIRVFLNILLY 301 (525)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887755
No 462
>KOG2880 consensus SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain [Signal transduction mechanisms]
Probab=31.95 E-value=6.7e+02 Score=26.90 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 011759 231 EKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIA 275 (478)
Q Consensus 231 ~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iA 275 (478)
+.+.-...+|.||++-|+++.|.-.|-+-..++-+-++ .||...
T Consensus 33 Rsg~ei~rmA~VY~~EgN~enafvLy~ry~tLfiEkip-kHrDy~ 76 (424)
T KOG2880|consen 33 RSGTEILRMANVYLEEGNVENAFVLYLRYITLFIEKIP-KHRDYR 76 (424)
T ss_pred hhhHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHhcc-cCcchh
Confidence 45667788999999999999999999999999888663 566544
No 463
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.93 E-value=1.6e+02 Score=31.43 Aligned_cols=34 Identities=18% Similarity=-0.002 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 011759 232 KVDILSALAEVALEREDIETSLSDYQKALTILER 265 (478)
Q Consensus 232 ~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~ 265 (478)
..-+|.-+|..|++..+++.|+..|.+++..+++
T Consensus 124 ~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~~ 157 (449)
T COG3014 124 GVLINYYKALNYMLLNDSAKARVEFNRANERQRR 157 (449)
T ss_pred HHHHHHHHHhhHHHhcchhhhHHHHHHHHHHHHH
Confidence 3446777899999999999999999999988763
No 464
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=31.54 E-value=62 Score=33.30 Aligned_cols=58 Identities=19% Similarity=0.056 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 011759 207 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILER 265 (478)
Q Consensus 207 dle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~ 265 (478)
.+..|.++++.|+-.-++..+ +..+.-|.+..+..|+...+|+-|..+|.+|+.++..
T Consensus 54 ~~~n~~e~~d~ALm~Ae~r~D-~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~ 111 (368)
T COG5091 54 TMENAKELLDKALMTAEGRGD-RSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVD 111 (368)
T ss_pred ChhhHHHHHHHHHHhhhccCC-cceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence 467888999999887776643 4456778888899999999999999999999998654
No 465
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=31.35 E-value=2e+02 Score=25.68 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 011759 297 YCQKAISVCKSRVQRLLNEVKSL 319 (478)
Q Consensus 297 ~~ekAL~I~k~rl~~l~~~l~~~ 319 (478)
.+..|+.+++.++..|...++.+
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l 113 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKL 113 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 68889999999988886665544
No 466
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=31.28 E-value=4.9e+02 Score=27.90 Aligned_cols=108 Identities=17% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCccCCCCCCcCCCCCCCCCcccccccc
Q 011759 74 TNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKNAV 153 (478)
Q Consensus 74 ~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~esdvLg~~~~~~~e~~~~~~~de~~~~~~ 153 (478)
.+.....+-.+=+..-.+||+| +|+||.+|.+++
T Consensus 192 Q~AWRERnp~~RI~~A~~ALeI--------N~eCA~AyvLLA-------------------------------------- 225 (556)
T KOG3807|consen 192 QKAWRERNPPARIKAAYQALEI--------NNECATAYVLLA-------------------------------------- 225 (556)
T ss_pred HHHHHhcCcHHHHHHHHHHHhc--------CchhhhHHHhhh--------------------------------------
Q ss_pred CCCCCccCCCCcccccCCCCCcCcccCCCCCCCCCccCCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcCCCchHH
Q 011759 154 NGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKV 233 (478)
Q Consensus 154 ~~e~a~~~~s~~~~~~~~~~~~d~~~~dv~~e~~ed~e~~~~E~~~e~eEd~ddle~AwE~Le~Ar~I~ek~l~~~~~~A 233 (478)
+|+....-.|-.+|..|+ +.+
T Consensus 226 ------------------------------------------------EEEa~Ti~~AE~l~k~AL-----------ka~ 246 (556)
T KOG3807|consen 226 ------------------------------------------------EEEATTIVDAERLFKQAL-----------KAG 246 (556)
T ss_pred ------------------------------------------------hhhhhhHHHHHHHHHHHH-----------HHH
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHH
Q 011759 234 DILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQ 299 (478)
Q Consensus 234 d~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~e 299 (478)
++..+-..-....+..-+| ..-.+.-.+.-+--+|++|-.++|+..+|++.|+
T Consensus 247 e~~yr~sqq~qh~~~~~da-------------~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~R 299 (556)
T KOG3807|consen 247 ETIYRQSQQCQHQSPQHEA-------------QLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMR 299 (556)
T ss_pred HHHHhhHHHHhhhccchhh-------------hhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHH
No 467
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=31.21 E-value=1.2e+02 Score=28.74 Aligned_cols=46 Identities=15% Similarity=0.103 Sum_probs=39.7
Q ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 011759 229 SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHI 274 (478)
Q Consensus 229 ~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~i 274 (478)
.+....++.+|-.=|-..|+|+-|+...+.+|+-..+..|.+|+.+
T Consensus 136 ~~~rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~v 181 (181)
T PF09311_consen 136 IPARLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPDV 181 (181)
T ss_dssp S-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCC
Confidence 4667889999999999999999999999999999999999999864
No 468
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=31.02 E-value=55 Score=33.66 Aligned_cols=61 Identities=23% Similarity=0.174 Sum_probs=49.5
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Q 011759 245 EREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 307 (478)
Q Consensus 245 e~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~ 307 (478)
..-....|.+++.+||-+.+.-- +...|..+.+..++.|....+|+-|.-||.+|+..+..
T Consensus 51 s~~~~~n~~e~~d~ALm~Ae~r~--D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~ 111 (368)
T COG5091 51 SDATMENAKELLDKALMTAEGRG--DRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVD 111 (368)
T ss_pred cccChhhHHHHHHHHHHhhhccC--CcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence 34456788999999998877542 34458889999999999999999999999999998753
No 469
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=30.97 E-value=88 Score=20.00 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011759 234 DILSALAEVALEREDIETSLSDYQKAL 260 (478)
Q Consensus 234 d~~~~LGev~le~g~feeAl~dy~kAL 260 (478)
.+|+.|-..+...|+++.|...|..-.
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 478899999999999999998887654
No 470
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=30.93 E-value=5.8e+02 Score=31.24 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=7.5
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 011759 238 ALAEVALEREDIETSLSDYQ 257 (478)
Q Consensus 238 ~LGev~le~g~feeAl~dy~ 257 (478)
.+-.+......+...+..++
T Consensus 689 ~~~~~~~~~~~~~~~~~~~~ 708 (1163)
T COG1196 689 ELKSLKNELRSLEDLLEELR 708 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 471
>PRK09039 hypothetical protein; Validated
Probab=30.75 E-value=6.5e+02 Score=26.39 Aligned_cols=39 Identities=13% Similarity=0.086 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHc
Q 011759 249 IETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEI 287 (478)
Q Consensus 249 feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~ 287 (478)
-...+..+...|.-.+..+.+.||.|....-.|.-.-..
T Consensus 114 ~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q 152 (343)
T PRK09039 114 AEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQ 152 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344455556667777777666666666555555444433
No 472
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.56 E-value=7.7e+02 Score=27.18 Aligned_cols=108 Identities=22% Similarity=0.130 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHH
Q 011759 234 DILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLL 313 (478)
Q Consensus 234 d~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~rl~~l~ 313 (478)
++-..+..-...+=+|+.+...|.+.-... .++...++ +|.+-|++|-.+++..=..|.
T Consensus 123 dik~~i~KR~~Kl~DyD~~r~~~~kvq~~k----~kd~~k~~-----------------KAeeEl~~Aq~~fE~lN~~L~ 181 (460)
T KOG3771|consen 123 DIKKAIAKRGRKLVDYDSARHSFEKLQAKK----KKDEAKLA-----------------KAEEELEKAQQVFEELNNELL 181 (460)
T ss_pred hHHHHHHhhcchhhhhHHHHHHHHHHHHhc----CCChhhhH-----------------HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555557777777777654444 22333322 388888888888888877777
Q ss_pred HHHHhhccCCCCCCCccccccccccccccccchhhhHHHHHHHHHHhhHHHHHHHHHHH
Q 011759 314 NEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKKLEDL 372 (478)
Q Consensus 314 ~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Ei~elk~ll~dl~~KieDl 372 (478)
.+|-.+-. ..+.-...--+... -.+ ...-.|+.-|-.-|.+|..|+.|.
T Consensus 182 eELP~L~~----sRv~f~vp~Fqsl~---~~q---~vf~~Emskl~~~L~~v~~kl~dq 230 (460)
T KOG3771|consen 182 EELPALYS----SRVGFFVPTFQSLF---NLQ---LVFHKEMSKLYKNLYDVLDKLFDQ 230 (460)
T ss_pred HHHHHHHH----hhhhhhcchHHHHH---HHH---HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 77766532 11111111000000 001 123456666677788888888776
No 473
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=30.48 E-value=5.5e+02 Score=27.59 Aligned_cols=21 Identities=10% Similarity=0.101 Sum_probs=18.4
Q ss_pred cCCCchHHHHHHHHHHHHHHH
Q 011759 287 IGSKPQEAIPYCQKAISVCKS 307 (478)
Q Consensus 287 ~~~~~eeAl~~~ekAL~I~k~ 307 (478)
.+|+|+.|+..+=++++++-.
T Consensus 258 ~~~ry~da~~r~yR~~e~~~q 278 (380)
T TIGR02710 258 TQGRYDDAAARLYRALELIVQ 278 (380)
T ss_pred HccCHHHHHHHHHHHHHHHHH
Confidence 789999999999999998644
No 474
>PHA01750 hypothetical protein
Probab=30.45 E-value=2.4e+02 Score=22.89 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=11.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Q 011759 352 EAEIETLSGLCGDLEKKLEDLQQ 374 (478)
Q Consensus 352 ~~Ei~elk~ll~dl~~KieDlk~ 374 (478)
+.||++++-=...|++++.|++.
T Consensus 48 ~~ei~~~kikqDnl~~qv~eik~ 70 (75)
T PHA01750 48 KTEIEELKIKQDELSRQVEEIKR 70 (75)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 34444444444445556665554
No 475
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=30.31 E-value=1.8e+02 Score=33.69 Aligned_cols=25 Identities=12% Similarity=0.272 Sum_probs=18.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhh
Q 011759 352 EAEIETLSGLCGDLEKKLEDLQQVA 376 (478)
Q Consensus 352 ~~Ei~elk~ll~dl~~KieDlk~~~ 376 (478)
+..++.++++|.++-++|.++...+
T Consensus 684 ~~Q~~~I~~iL~~~~~~I~~~v~~i 708 (717)
T PF10168_consen 684 ESQKRTIKEILKQQGEEIDELVKQI 708 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888888888888776643
No 476
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=29.93 E-value=2.6e+02 Score=23.72 Aligned_cols=58 Identities=19% Similarity=0.262 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccccccccccccccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHH
Q 011759 295 IPYCQKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKKLEDLQQ 374 (478)
Q Consensus 295 l~~~ekAL~I~k~rl~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Ei~elk~ll~dl~~KieDlk~ 374 (478)
|...+..|.-|+.+|+....+|....-+ ++.-..+++|+..|++.+...+.+|.-|+.
T Consensus 7 Id~lEekl~~cr~~le~ve~rL~~~eLs----------------------~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 7 IDGLEEKLAQCRRRLEAVESRLRRRELS----------------------PEARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHcccCCC----------------------hHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 5556677777777777777766643210 123357789999999999999999999987
No 477
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=29.75 E-value=2.4e+02 Score=30.11 Aligned_cols=57 Identities=16% Similarity=0.307 Sum_probs=45.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccccccccccccccccchhhhHHHHHHHHHHhhHHHHHHHH
Q 011759 290 KPQEAIPYCQKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKKL 369 (478)
Q Consensus 290 ~~eeAl~~~ekAL~I~k~rl~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Ei~elk~ll~dl~~Ki 369 (478)
++++.+.+++.-+.-++.+|..|+.++... + ..++.+++++.-|.-++.+|
T Consensus 239 ~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~---------------------------~--k~~~k~~~~~~q~~~~~k~~ 289 (406)
T PF02388_consen 239 NGKEYLESLQEKLEKLEKEIEKLEEKLEKN---------------------------P--KKKNKLKELEEQLASLEKRI 289 (406)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------T--HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------------------c--chhhHHHHHHHHHHHHHHHH
Confidence 567888888888888888888887766532 1 45678889999999999999
Q ss_pred HHHHHh
Q 011759 370 EDLQQV 375 (478)
Q Consensus 370 eDlk~~ 375 (478)
.++++.
T Consensus 290 ~~~~~~ 295 (406)
T PF02388_consen 290 EEAEEL 295 (406)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999885
No 478
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=29.51 E-value=5.7e+02 Score=25.35 Aligned_cols=47 Identities=13% Similarity=0.143 Sum_probs=38.1
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhcc
Q 011759 78 KESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEE 125 (478)
Q Consensus 78 ~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a~~e 125 (478)
+.-.|..+..++.++.--....+|+..+ .+.++..||.++..+|+.+
T Consensus 58 k~~~~p~~~~~Lg~~M~~~G~~lg~dS~-~G~aL~~~G~a~~kia~~~ 104 (223)
T cd07614 58 KNPGYPQSEGLLGETMIRYGKELGDESN-FGDALLDAGESMKRLAEVK 104 (223)
T ss_pred cCCCCCChHhHHHHHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHH
Confidence 3445788889999999888888888655 7899999999999887653
No 479
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=29.50 E-value=3.8e+02 Score=31.85 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCc
Q 011759 235 ILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKP 291 (478)
Q Consensus 235 ~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~ 291 (478)
++..|-.+|.+++++++|+..|++++.-... . +.++.|=.||-+-+.|
T Consensus 79 tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-e--------ell~~lFmayvR~~~y 126 (932)
T KOG2053|consen 79 TLQFLQNVYRDLGKLDEAVHLYERANQKYPS-E--------ELLYHLFMAYVREKSY 126 (932)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-H--------HHHHHHHHHHHHHHHH
Confidence 3445556677777777777777777655443 1 3444455555555544
No 480
>KOG1997 consensus PH domain-containing protein [Signal transduction mechanisms]
Probab=29.44 E-value=2.6e+02 Score=34.96 Aligned_cols=88 Identities=10% Similarity=0.027 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHHcCC
Q 011759 212 WKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVE--PDSRHIAELNFRICLCLEIGS 289 (478)
Q Consensus 212 wE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg--~d~r~iAea~~~LG~ay~~~~ 289 (478)
.+.|++|...+.+..-++ -++.+|-.+=-||-.+.+|.+=...|.+--.+..++.. .++.++.-+||++|.--.+-|
T Consensus 1161 v~~l~~~~~~~~~aelye-~~~~v~kliipv~e~~~~~~~L~~~~~~l~~~~~~i~~~~~~~kr~~g~yfrv~fyg~~fg 1239 (1518)
T KOG1997|consen 1161 VKLLELAAALLSKAELYE-LLAPVYKLIIPVLEKNRSFKKLAKVHALLQRAYDKILEVESSPKRCFGTYFRVGFYGSKFG 1239 (1518)
T ss_pred HHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhccccccccceeeeEeechhhcc
Confidence 344555555544432222 24566666667777777777777777666666666654 456777888888877656666
Q ss_pred CchHHHHHHHH
Q 011759 290 KPQEAIPYCQK 300 (478)
Q Consensus 290 ~~eeAl~~~ek 300 (478)
..+...-.|+.
T Consensus 1240 ~~~~~e~vyke 1250 (1518)
T KOG1997|consen 1240 ELDNKEYVYKE 1250 (1518)
T ss_pred cccchhhhhcc
Confidence 55544444443
No 481
>PRK04863 mukB cell division protein MukB; Provisional
Probab=28.93 E-value=9.1e+02 Score=30.69 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011759 232 KVDILSALAEVALEREDIETSLSDYQKALTILE 264 (478)
Q Consensus 232 ~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~ 264 (478)
+..+...|.++.-..+..+.-+..+++-+.+..
T Consensus 309 L~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e 341 (1486)
T PRK04863 309 LVEMARELAELNEAESDLEQDYQAASDHLNLVQ 341 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555444444
No 482
>PRK09039 hypothetical protein; Validated
Probab=28.92 E-value=6.8e+02 Score=26.25 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=10.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHH
Q 011759 239 LAEVALEREDIETSLSDYQKALTIL 263 (478)
Q Consensus 239 LGev~le~g~feeAl~dy~kAL~I~ 263 (478)
|+.-.....+.+..+..++.-+.+.
T Consensus 69 L~le~~~~~~l~~~l~~l~~~l~~a 93 (343)
T PRK09039 69 LSLERQGNQDLQDSVANLRASLSAA 93 (343)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3333344444555554444444433
No 483
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=28.84 E-value=69 Score=32.34 Aligned_cols=53 Identities=15% Similarity=0.128 Sum_probs=41.6
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 011759 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILER 265 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~ 265 (478)
.|.+-|-|.|..|+ ..-++-+..|+.||+.....|+|+.|..-|++.|+|...
T Consensus 9 ~D~~aaaely~qal-------~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 9 GDAEAAAELYNQAL-------ELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred CChHHHHHHHHHHh-------hcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 44555555555554 445677899999999999999999999999999988653
No 484
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=28.39 E-value=1.4e+02 Score=25.85 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=32.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 011759 59 REKTVEFADELMEKGTNALKESDYGEAAECFSRALEIR 96 (478)
Q Consensus 59 ~~~~l~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~ 96 (478)
...-+..|..|+..|..++..||++.|--+|-+.+.+.
T Consensus 31 l~~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~ 68 (115)
T PF08969_consen 31 LKRYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLV 68 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 33457789999999999999999999999999999986
No 485
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=28.33 E-value=6.7e+02 Score=27.80 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=6.9
Q ss_pred HHHHHHHhhHHHHHHHH
Q 011759 353 AEIETLSGLCGDLEKKL 369 (478)
Q Consensus 353 ~Ei~elk~ll~dl~~Ki 369 (478)
..|++|+.-+..|+.++
T Consensus 104 ~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 104 RRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 486
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.71 E-value=2.7e+02 Score=28.75 Aligned_cols=72 Identities=19% Similarity=0.129 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHH
Q 011759 232 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQR 311 (478)
Q Consensus 232 ~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekAL~I~k~rl~~ 311 (478)
+|.+|.+|+.-. +-++.|+=|++++-+.-.| ...++..++.|+..+++|++|....+.||.-.-..-..
T Consensus 175 LA~awv~la~gg----------ek~qdAfyifeE~s~k~~~-T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 175 LAQAWVKLATGG----------EKIQDAFYIFEELSEKTPP-TPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET 243 (299)
T ss_pred HHHHHHHHhccc----------hhhhhHHHHHHHHhcccCC-ChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 566666555422 2255556666666543333 34677889999999999999999999998765444333
Q ss_pred HHH
Q 011759 312 LLN 314 (478)
Q Consensus 312 l~~ 314 (478)
|-|
T Consensus 244 L~N 246 (299)
T KOG3081|consen 244 LAN 246 (299)
T ss_pred HHH
Confidence 433
No 487
>smart00748 HEPN Higher Eukarytoes and Prokaryotes Nucleotide-binding domain.
Probab=27.58 E-value=1e+02 Score=26.26 Aligned_cols=33 Identities=24% Similarity=0.189 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 011759 64 EFADELMEKGTNALKESDYGEAAECFSRALEIR 96 (478)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~ 96 (478)
+.|...+..+...+..|.|+.|+-..++|++..
T Consensus 2 ~~A~~~l~~A~~~~~~g~y~~a~f~aqqavEk~ 34 (113)
T smart00748 2 RRAKRFLEAAKLDLEKGFYDLAAFLSQQAAELA 34 (113)
T ss_pred chHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 457788888889999999999999999999874
No 488
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.51 E-value=5.1e+02 Score=29.54 Aligned_cols=95 Identities=19% Similarity=0.222 Sum_probs=69.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhc-----CCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC-----------
Q 011759 206 SDLDLAWKMLDVARAIAEKHW-----GDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEP----------- 269 (478)
Q Consensus 206 ddle~AwE~Le~Ar~I~ek~l-----~~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~----------- 269 (478)
.-|+.|..+|..|..++.-.- -.+|.+++.+.-++++...+|+++-|....++||=.....+-+
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 567788889999988875431 2468899999999999999999999999999999888775432
Q ss_pred -----CChHHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 011759 270 -----DSRHIAELNFRICLCLEIGSKPQEAIPYCQK 300 (478)
Q Consensus 270 -----d~r~iAea~~~LG~ay~~~~~~eeAl~~~ek 300 (478)
++|..=-++|+--.-+...|-+.-|+++|+-
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKl 367 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKL 367 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 3455555555555555556666666665544
No 489
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=27.49 E-value=2.7e+02 Score=25.04 Aligned_cols=76 Identities=13% Similarity=0.054 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHcC
Q 011759 212 WKMLDVARAIAEKHWG--DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPD-SRHIAELNFRICLCLEIG 288 (478)
Q Consensus 212 wE~Le~Ar~I~ek~l~--~~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d-~r~iAea~~~LG~ay~~~ 288 (478)
..+|+++..-|..... +.++...++...++.. .++...|. .+.... -..+|.-|-..+..|+..
T Consensus 46 ~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~------~dp~~if~-------~L~~~~IG~~~AlfYe~~A~~lE~~ 112 (125)
T smart00777 46 LTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC------DEPRELFQ-------FLYSKGIGTKLALFYEEWAQLLEAA 112 (125)
T ss_pred HHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc------CCHHHHHH-------HHHHCCcchhhHHHHHHHHHHHHHc
Confidence 4567888887766543 3477888888888753 22333332 222211 244688888999999999
Q ss_pred CCchHHHHHHHH
Q 011759 289 SKPQEAIPYCQK 300 (478)
Q Consensus 289 ~~~eeAl~~~ek 300 (478)
|++.+|.+.|+.
T Consensus 113 g~~~~A~~iy~~ 124 (125)
T smart00777 113 GRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHc
Confidence 999999998874
No 490
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=27.41 E-value=2.3e+02 Score=26.74 Aligned_cols=64 Identities=16% Similarity=0.048 Sum_probs=50.7
Q ss_pred chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 011759 230 MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKA 301 (478)
Q Consensus 230 ~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~eeAl~~~ekA 301 (478)
..+...+..+..+.+..++++++...+...--++. ..++....-|..+...++|.+|+..|+..
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP--------~~~e~~~~~~~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRP--------EFPELDLFDGWLHIVRGDWDDALRLLREL 70 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCC--------CchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 35677888889999999999998877765544443 33688888999999999999999988763
No 491
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=27.15 E-value=1.7e+02 Score=31.94 Aligned_cols=91 Identities=13% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCch------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 011759 209 DLAWKMLDVARAIAEKHWGDSME------KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRIC 282 (478)
Q Consensus 209 e~AwE~Le~Ar~I~ek~l~~~~~------~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG 282 (478)
+.|+..|.+|.....-+.+-..+ .++|+..-+..+ ...+++.++..+++|-.+..++- -|..|++++|-++
T Consensus 370 k~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~L~~A~~~f~kL~--~he~ildv~yf~A 446 (482)
T KOG4322|consen 370 KAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRYLDLAQSIFYKLG--CHEKILDVTYFSA 446 (482)
T ss_pred HHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHHHHHHHHHHHHcc--chHHHHHHHHHHH
Q ss_pred HHHHcCCCc---hHHHHHHHHHH
Q 011759 283 LCLEIGSKP---QEAIPYCQKAI 302 (478)
Q Consensus 283 ~ay~~~~~~---eeAl~~~ekAL 302 (478)
..|...|+. +++...|+|++
T Consensus 447 ~~yn~lGd~~eRn~~AslFrk~~ 469 (482)
T KOG4322|consen 447 YQYNHLGDSPERNLLASLFRKAW 469 (482)
T ss_pred HHHHhhcCchHHHHHHHHHHHHH
No 492
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=27.01 E-value=5e+02 Score=27.07 Aligned_cols=36 Identities=19% Similarity=0.145 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 011759 232 KVDILSALAEVALEREDIETSLSDYQKALTILERMV 267 (478)
Q Consensus 232 ~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~ll 267 (478)
.|.+|..+|....+.++|-+||..|+.|+...+...
T Consensus 252 ~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~~~ 287 (346)
T cd09247 252 EARSQLYLARRLKEAGHIGVAVGVLREALRNLKKKL 287 (346)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 578899999999999999999999999999766543
No 493
>KOG1573 consensus Aldehyde reductase [General function prediction only]
Probab=26.81 E-value=5.3e+02 Score=24.71 Aligned_cols=63 Identities=24% Similarity=0.237 Sum_probs=53.1
Q ss_pred CchHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCc
Q 011759 229 SMEKVDILSALAEVALERE---DIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKP 291 (478)
Q Consensus 229 ~~~~Ad~~~~LGev~le~g---~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~~~~ 291 (478)
.+.+-.|...|.++--+.. ++.+-+-.|+.|-.|++.+-..+..+++-..+-||.++.+-|..
T Consensus 72 kM~i~ec~ell~~~vDESDPDlDepni~Ha~QtAE~iR~~~Pd~dWlHLtaLiHDLGKvl~f~Gep 137 (204)
T KOG1573|consen 72 KMTIWECCELLNEVVDESDPDLDEPNIQHALQTAEAIRKDYPDEDWLHLTALIHDLGKVLAFGGEP 137 (204)
T ss_pred heeHHHHHHHHHhhhcccCCCCchHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcCCc
Confidence 3556788888888877764 67788889999999999988888899999999999999988864
No 494
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=26.78 E-value=3.1e+02 Score=28.03 Aligned_cols=64 Identities=22% Similarity=0.257 Sum_probs=36.3
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccccccccccccccccchhhhHHHHHHHHH
Q 011759 279 FRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETL 358 (478)
Q Consensus 279 ~~LG~ay~~~~~~eeAl~~~ekAL~I~k~rl~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Ei~el 358 (478)
-.|-+.-.++.+-..|-+++++-| .||.+|+.+++.+.. ...++..++..|
T Consensus 203 e~~kleRkrlrnreaa~Kcr~rkL----drisrLEdkv~~lk~-------------------------~n~~L~~~l~~l 253 (279)
T KOG0837|consen 203 EKIKLERKRLRNREAASKCRKRKL----DRISRLEDKVKTLKI-------------------------YNRDLASELSKL 253 (279)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH----HHHHHHHhhhhhhhh-------------------------hhhhHHHHHHHH
Confidence 334444444566666767766654 377777776665432 113455566666
Q ss_pred HhhHHHHHHHHHH
Q 011759 359 SGLCGDLEKKLED 371 (478)
Q Consensus 359 k~ll~dl~~KieD 371 (478)
++.+.++.+||.+
T Consensus 254 ~~~v~e~k~~V~~ 266 (279)
T KOG0837|consen 254 KEQVAELKQKVME 266 (279)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666554
No 495
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=26.74 E-value=7.7e+02 Score=25.99 Aligned_cols=19 Identities=16% Similarity=0.156 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHhhhh
Q 011759 105 LECVNAYYQYGRALLYKAQ 123 (478)
Q Consensus 105 pe~A~~y~~YG~ALl~~a~ 123 (478)
-|.+.++|++|..|-++|.
T Consensus 111 fEka~vlfNigal~sq~a~ 129 (361)
T cd09239 111 FEEASVLYNIGALHSQLGA 129 (361)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4667788888888777653
No 496
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=26.68 E-value=95 Score=32.65 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 011759 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRV 97 (478)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~ 97 (478)
.+..|.+|+.++.-.-..++|++|..+|+.||+.+.
T Consensus 6 ~l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~ 41 (439)
T KOG0739|consen 6 FLQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFL 41 (439)
T ss_pred HHHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHH
Confidence 567799999999999999999999999999999653
No 497
>KOG2518 consensus 5'-3' exonuclease [Replication, recombination and repair]
Probab=26.53 E-value=1.3e+02 Score=33.57 Aligned_cols=45 Identities=27% Similarity=0.427 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q 011759 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRA 117 (478)
Q Consensus 65 ~A~~L~~~G~~~~~~gdy~eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~A 117 (478)
+=.+-+.+|..+++.|+-.+|.++|++++.| .|++|..+..|=+.
T Consensus 95 ~R~~n~~~a~~ll~~G~~~~A~~~fqr~VdI--------T~~ma~~lI~~~r~ 139 (556)
T KOG2518|consen 95 RRKKNLDAAEQLLAEGKESNARECFQRCVDI--------TPEMAHKLIQYLRS 139 (556)
T ss_pred HHHHhHHHHHHHHHcCCHHHHHHHHHHhccC--------cHHHHHHHHHHHHH
Confidence 3344556888999999999999999999999 79999888877544
No 498
>cd07670 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=26.21 E-value=5.2e+02 Score=25.48 Aligned_cols=133 Identities=11% Similarity=0.106 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhcCC----CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcC
Q 011759 213 KMLDVARAIAEKHWGD----SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIG 288 (478)
Q Consensus 213 E~Le~Ar~I~ek~l~~----~~~~Ad~~~~LGev~le~g~feeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~ 288 (478)
.++.++-....|..+. .-++..++..|+.++.-.++.... -+..|+. .++.+|..||..+..+
T Consensus 30 ~l~~~~~e~~kk~~~~~KkEyqkiG~af~~LsqaF~~d~~~~s~--~L~~Av~-----------~tg~~y~~IG~~faeQ 96 (207)
T cd07670 30 QLNHTANEFARKQVTGFKKEYQKVGQSFKGLSQAFELDQQAFSA--GLNQAIA-----------FTGEAYEAIGELFAEQ 96 (207)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHccCCcccch--HHHHHHH-----------HHHHHHHHHHHHHHhc
Confidence 3445555555555442 124566677777766555432211 2222222 2456677777766666
Q ss_pred CCch-----HHHHHHHH-------HHHHHHHHHHHHHHHHHhhccCCCCCCCccccccccccccccccchhhhHHHHHHH
Q 011759 289 SKPQ-----EAIPYCQK-------AISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIE 356 (478)
Q Consensus 289 ~~~e-----eAl~~~ek-------AL~I~k~rl~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Ei~ 356 (478)
.+.+ +.+..|+- .|.+.+..|.++++-.+-..+ + +++. .....+.+...
T Consensus 97 pk~Dl~Pl~d~L~~Y~G~L~~fPDii~v~KgA~~KvKE~~k~~~e------------g--km~~-----~~~~~v~~R~d 157 (207)
T cd07670 97 PRQDLDPVMDLLALYQGHLANFPDIIHVQKGALTKVKESKKHVEE------------G--KMEL-----QKADGIQDRCN 157 (207)
T ss_pred chhhhHHHHHHHHHHhCccccCCchHHHhHHHHHHHHHHHHHHHh------------h--ccch-----hhHHHHHHHHH
Confidence 5532 34444443 444444455544332221110 0 0000 01234455555
Q ss_pred HH-HhhHHHHHHH----HHHHHHhhc
Q 011759 357 TL-SGLCGDLEKK----LEDLQQVAL 377 (478)
Q Consensus 357 el-k~ll~dl~~K----ieDlk~~~~ 377 (478)
-+ =.++.||..= +.|+|.+|.
T Consensus 158 viSya~~AEm~HFh~~r~~d~k~~M~ 183 (207)
T cd07670 158 IISFATLAEIHHFHKIRVRDFKSQMQ 183 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 55 3677888765 999999877
No 499
>PRK11637 AmiB activator; Provisional
Probab=26.17 E-value=3.1e+02 Score=29.33 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011759 294 AIPYCQKAISVCKSRVQRLLNEV 316 (478)
Q Consensus 294 Al~~~ekAL~I~k~rl~~l~~~l 316 (478)
.+...++.|.-....|..++.+|
T Consensus 76 ~l~~l~~qi~~~~~~i~~~~~~i 98 (428)
T PRK11637 76 QLKKQEEAISQASRKLRETQNTL 98 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443333
No 500
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=25.98 E-value=8.2e+02 Score=26.01 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=16.2
Q ss_pred hcCCHHHHHHHHHHHHHHHH
Q 011759 245 EREDIETSLSDYQKALTILE 264 (478)
Q Consensus 245 e~g~feeAl~dy~kAL~I~~ 264 (478)
..++|++|+..|+.+|+.+.
T Consensus 22 ~a~nY~eA~~lY~~aleYF~ 41 (439)
T KOG0739|consen 22 NAKNYEEALRLYQNALEYFL 41 (439)
T ss_pred chhchHHHHHHHHHHHHHHH
Confidence 45789999999999887554
Done!