Query 011760
Match_columns 478
No_of_seqs 145 out of 435
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 14:45:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011760.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011760hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rce_A Oligosaccharide transfe 35.5 4.8E+02 0.016 28.6 15.5 61 152-212 132-203 (724)
2 2f8e_A VPG protein; RNA-depend 8.0 1E+02 0.0035 18.6 0.4 14 70-83 2-15 (26)
3 2ks1_B Epidermal growth factor 5.2 6E+02 0.02 17.4 3.2 27 438-464 14-40 (44)
4 2jb0_B Colicin E7; hydrolase/i 5.1 4E+02 0.014 22.7 2.7 25 50-74 43-86 (131)
5 1fr2_B Colicin E9; protein-pro 4.9 4.2E+02 0.014 22.7 2.7 24 50-73 46-88 (134)
6 7cei_B Protein (colicin E7 imm 4.6 4.8E+02 0.016 23.8 3.0 24 51-74 119-161 (206)
7 1ceu_A Protein (HIV-1 regulato 4.1 3.5E+02 0.012 19.3 1.4 6 1-6 1-6 (51)
8 3hd6_A Ammonium transporter RH 3.4 1.8E+03 0.063 22.7 6.8 10 376-385 63-72 (490)
9 2l2t_A Receptor tyrosine-prote 3.1 1.2E+03 0.043 15.8 3.4 27 438-464 13-39 (44)
10 3arc_L Photosystem II reaction 3.1 8.8E+02 0.03 15.9 2.5 28 1-28 1-28 (37)
No 1
>3rce_A Oligosaccharide transferase to N-glycosylate PROT; oligosaccharyltransferase, membrane protein, helical bundle, glycosylation, acceptor peptide, plasma membrane; HET: PPN; 3.40A {Campylobacter lari}
Probab=35.46 E-value=4.8e+02 Score=28.58 Aligned_cols=61 Identities=15% Similarity=-0.127 Sum_probs=35.3
Q ss_pred hHHHHHHhhchHHHHHhcccCh--hhHHHHHHHHHHHHHHc----Cc---hhHHHHHHHHH--HhhcchhHH
Q 011760 152 DIAALVYLWNPFTIVACVGLST--SPIENLVVILSLYGACT----RL---APLAAFGWVMG--THLSLYPGV 212 (478)
Q Consensus 152 ~~~~~~yL~NP~ti~~s~rgSt--~~~~~~lvl~~l~~~~~----~~---~~la~~~lala--~h~~iYPii 212 (478)
...+.+--+-|--+.=+..|.. |++.-++.++++|+..+ ++ ..+||+++|+. +|..-|.++
T Consensus 132 l~AAll~ai~P~~i~RS~aG~~D~e~l~i~~~ll~~~~~i~alk~~~~~~~~lagl~~~ly~~~~~ggy~fi 203 (724)
T 3rce_A 132 FIAALLGSIANSYYNRTMSGYYDTDMLVLVLPMLILLTFIRLTINKDIFTLLLSPIFIMIYLWWYPSSYSLN 203 (724)
T ss_dssp HHHHHHHTTSHHHHHTSSTTCCSGGGGTTHHHHHHHHHHHHHHHHCCTHHHHHHHHHHHHHHHSCGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcchhHHH
Confidence 4455556788877777777665 44556666666665542 33 34666666544 444444443
No 2
>2f8e_A VPG protein; RNA-dependent RNA polymerase , protein primer, transferase; HET: U5P; 2.90A {Foot-and-mouth disease virus - type C} PDB: 2d7s_B
Probab=7.95 E-value=1e+02 Score=18.61 Aligned_cols=14 Identities=43% Similarity=0.847 Sum_probs=11.4
Q ss_pred CCCCCccccchHHH
Q 011760 70 PYAGSMYHGSPLLL 83 (478)
Q Consensus 70 PY~~~tyrytPLLl 83 (478)
||+|..=|+.||=+
T Consensus 2 pyagplerq~plkv 15 (26)
T 2f8e_A 2 PYAGPLERQRPLKV 15 (26)
T ss_pred CcCCchhhcCccee
Confidence 88888888888744
No 3
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=5.24 E-value=6e+02 Score=17.39 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHh
Q 011760 438 ATAMAFACFQIVLVVESVSAILNYDRK 464 (478)
Q Consensus 438 a~tLvf~~~~~~ll~d~i~~~l~~~~~ 464 (478)
|.+.+-.++-+.++.-.++-++|++..
T Consensus 14 A~gVVgGv~~~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 14 ATGMVGALLLLLVVALGIGLFMRRRHI 40 (44)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred EeehhHHHHHHHHHHHHHHHHhhhhHh
Confidence 456666666666666666777777653
No 4
>2jb0_B Colicin E7; hydrolase/inhibitor, hydrolase/inhibitor complex, zinc, toxin, plasmid, nuclease, hydrolase, antibiotic, H-N-H motif, bacteriocin; 1.91A {Escherichia coli} SCOP: d.4.1.1 PDB: 3fbd_A 2jaz_B 2jbg_B 3gkl_A 3gjn_B 1pt3_A 2ivh_A 1ujz_B 2erh_B
Probab=5.06 E-value=4e+02 Score=22.74 Aligned_cols=25 Identities=12% Similarity=0.357 Sum_probs=17.9
Q ss_pred ccCchhhHHHHHH-------------------HHhCCCCCCCCC
Q 011760 50 PVTSIRRLAEGYW-------------------LKQSSMSPYAGS 74 (478)
Q Consensus 50 p~ts~~~l~Eg~~-------------------l~~~G~SPY~~~ 74 (478)
.++|||.++||.. .+++|.+||.+.
T Consensus 43 ~F~sFd~FR~afW~eVs~DpeL~~QF~~~N~~rmk~G~aP~~~~ 86 (131)
T 2jb0_B 43 EFKSFDDFRKKFWEEVSKDPELSKQFSRNNNDRMKVGKAPKTRT 86 (131)
T ss_dssp EESSHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHTTCCCBCCG
T ss_pred cCCCHHHHHHHHHHHHhcCHHHHHHhhHHHHHHHHCCCCCCCCc
Confidence 3677777777765 457899999543
No 5
>1fr2_B Colicin E9; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: d.4.1.1 PDB: 1bxi_B 1emv_B 1fsj_B 2gyk_B 2gze_B 2gzf_B 2gzg_B 2gzi_B 2gzj_B 2k5x_B 2vlo_B 2wpt_B 2vlp_B 2vln_B 2vlq_B 1v13_A 1v14_A 1v15_A 3u43_B 1znv_B ...
Probab=4.88 E-value=4.2e+02 Score=22.71 Aligned_cols=24 Identities=17% Similarity=0.405 Sum_probs=17.7
Q ss_pred ccCchhhHHHHHH-------------------HHhCCCCCCCC
Q 011760 50 PVTSIRRLAEGYW-------------------LKQSSMSPYAG 73 (478)
Q Consensus 50 p~ts~~~l~Eg~~-------------------l~~~G~SPY~~ 73 (478)
.++|||.++||.. .+++|.+||.+
T Consensus 46 ~F~sFd~FR~afW~eVs~DpeL~~QF~~~N~~rmk~G~aP~~~ 88 (134)
T 1fr2_B 46 EFKSFDDFRKAVWEEVSKDPELSKNLNPSNKSSVSKGYSPFTP 88 (134)
T ss_dssp EESSHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHTTCCCBCC
T ss_pred cCCCHHHHHHHHHHHHhcCHHHHHHhCHHHHHHHHCCCCCCCc
Confidence 4677888877766 45789999954
No 6
>7cei_B Protein (colicin E7 immunity protein); DNAse, E-group colicins, protein-protein interaction, protei recognition, immune system; 2.30A {Escherichia coli str} SCOP: d.4.1.1
Probab=4.59 E-value=4.8e+02 Score=23.77 Aligned_cols=24 Identities=13% Similarity=0.379 Sum_probs=17.8
Q ss_pred cCchhhHHHHHH-------------------HHhCCCCCCCCC
Q 011760 51 VTSIRRLAEGYW-------------------LKQSSMSPYAGS 74 (478)
Q Consensus 51 ~ts~~~l~Eg~~-------------------l~~~G~SPY~~~ 74 (478)
++|||.++|+.. .+++|.+||.+.
T Consensus 119 F~sFD~FR~AFWkeVa~DPeLskQF~~~N~~~Mk~G~AP~ap~ 161 (206)
T 7cei_B 119 FKSFDDFRKKFWEEVSKDPELSKQFSRNNNDRMKVGKAPKTRT 161 (206)
T ss_dssp CSSHHHHHHHHHHHHTTCTTTGGGSCHHHHHHHHTTCCCBCCG
T ss_pred CCCHHHHHHHHHHHHccCHHHHHHHhHHHHHHHHCCCCCCCCh
Confidence 677888888876 456788888543
No 7
>1ceu_A Protein (HIV-1 regulatory protein N-terminal domain VPR); helical domain, amphipaticity, viral protein; NMR {Synthetic} SCOP: j.11.1.1 PDB: 1fi0_A
Probab=4.14 E-value=3.5e+02 Score=19.30 Aligned_cols=6 Identities=50% Similarity=0.584 Sum_probs=3.8
Q ss_pred CCCccc
Q 011760 1 METKKE 6 (478)
Q Consensus 1 ~~~~~~ 6 (478)
||+.||
T Consensus 1 mEqaPE 6 (51)
T 1ceu_A 1 MEQAPE 6 (51)
T ss_dssp CCSCCC
T ss_pred CCCCCC
Confidence 666666
No 8
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=3.43 E-value=1.8e+03 Score=22.69 Aligned_cols=10 Identities=40% Similarity=0.577 Sum_probs=7.7
Q ss_pred cCCCcchhHH
Q 011760 376 KSYPSVGDSA 385 (478)
Q Consensus 376 k~ypT~~df~ 385 (478)
+.||..||.-
T Consensus 63 ~~Yp~fqDv~ 72 (490)
T 3hd6_A 63 YRYPSFQDVH 72 (490)
T ss_dssp HHHHHHHHHH
T ss_pred hcCccchhHH
Confidence 4699999973
No 9
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=3.10 E-value=1.2e+03 Score=15.79 Aligned_cols=27 Identities=15% Similarity=0.127 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHh
Q 011760 438 ATAMAFACFQIVLVVESVSAILNYDRK 464 (478)
Q Consensus 438 a~tLvf~~~~~~ll~d~i~~~l~~~~~ 464 (478)
|.+.+=.++.+.++.-.++-++|++..
T Consensus 13 A~gVVgGv~~v~ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 13 AAGVIGGLFILVIVGLTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred EEeehHHHHHHHHHHHHHHHHhhhhhh
Confidence 445555555566666666777777653
No 10
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=3.09 E-value=8.8e+02 Score=15.91 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=0.0
Q ss_pred CCCccccchhhhhchhhHHHHHHHHHHH
Q 011760 1 METKKEEKKSKIKQTSSFWVWVTASVIF 28 (478)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l 28 (478)
|...|.+..-|-...+..|.++++-++.
T Consensus 1 ~~~Npn~q~VELNRTSLy~GLLlifvla 28 (37)
T 3arc_L 1 MEPNPNRQPVELNRTSLYLGLLLILVLA 28 (37)
T ss_dssp CCCCTTCCCBCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcceechhhHHHHHHHHHHHH
Done!