Query 011760
Match_columns 478
No_of_seqs 145 out of 435
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 14:46:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011760.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011760hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2jb0b1 d.4.1.1 (B:449-572) DN 6.6 1.4E+02 0.0099 23.4 2.7 23 51-73 41-82 (124)
2 d2gykb1 d.4.1.1 (B:4-133) DNas 5.8 1.6E+02 0.012 23.1 2.7 23 51-73 44-85 (130)
3 d3cx5c1 f.32.1.1 (C:262-385) M 4.1 5.7E+02 0.042 19.1 5.1 22 323-344 13-34 (124)
4 d1bd8a_ d.211.1.1 (A:) Cell cy 3.8 3.5E+02 0.026 19.9 3.6 29 58-86 114-142 (156)
5 d2a7la1 d.20.1.1 (A:1-117) Ubi 3.2 1.5E+02 0.011 22.2 0.5 11 68-78 46-56 (117)
6 d1zaka2 g.41.2.1 (A:128-158) M 3.1 1.6E+02 0.011 17.4 0.5 11 68-78 4-14 (31)
7 d1yh2a1 d.20.1.1 (A:1-154) Ubi 3.0 1.6E+02 0.011 23.1 0.5 11 68-78 43-53 (154)
8 d1awcb_ d.211.1.1 (B:) GA bind 3.0 3.8E+02 0.027 19.3 3.0 24 63-86 119-142 (153)
9 d2hrkb1 a.45.1.2 (B:4-121) GU4 2.8 3.6E+02 0.026 20.2 2.5 27 376-402 59-85 (118)
10 d2axtl1 f.23.31.1 (L:1-37) Pho 2.7 5.9E+02 0.043 15.1 3.0 31 1-31 1-31 (37)
No 1
>d2jb0b1 d.4.1.1 (B:449-572) DNase domain of colicin E7 {Escherichia coli [TaxId: 562]}
Probab=6.58 E-value=1.4e+02 Score=23.37 Aligned_cols=23 Identities=13% Similarity=0.374 Sum_probs=17.0
Q ss_pred cCchhhHHHHHH-------------------HHhCCCCCCCC
Q 011760 51 VTSIRRLAEGYW-------------------LKQSSMSPYAG 73 (478)
Q Consensus 51 ~ts~~~l~Eg~~-------------------l~~~G~SPY~~ 73 (478)
+.|||.++||.. .+++|.+||.+
T Consensus 41 F~sFd~FR~afW~~Va~DpeL~~QF~~~N~~rmk~G~AP~a~ 82 (124)
T d2jb0b1 41 FKSFDDFRKKFWEEVSKDPELSKQFSRNNNDRMKVGKAPKTR 82 (124)
T ss_dssp ESSHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHTTCCCBCC
T ss_pred CCCHHHHHHHHHHHHhcCHHHHHHhCHHHHHHHhCCCCCCCC
Confidence 577888877765 45788999854
No 2
>d2gykb1 d.4.1.1 (B:4-133) DNase domain of colicin E9 {Escherichia coli [TaxId: 562]}
Probab=5.80 E-value=1.6e+02 Score=23.15 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=16.3
Q ss_pred cCchhhHHHHHH-------------------HHhCCCCCCCC
Q 011760 51 VTSIRRLAEGYW-------------------LKQSSMSPYAG 73 (478)
Q Consensus 51 ~ts~~~l~Eg~~-------------------l~~~G~SPY~~ 73 (478)
+.|||.++||.. .+++|.+||.+
T Consensus 44 F~sFd~FR~afW~~Va~DpeL~~QF~~~N~~rmk~G~AP~a~ 85 (130)
T d2gykb1 44 FKSFDDFRKAVWEEVSKDPELSKNLNPSNKSSVSKGYSPFTP 85 (130)
T ss_dssp ESSHHHHHHHHHHHHHHCTTTGGGSCHHHHHHHHTTCCCBCC
T ss_pred cCCHHHHHHHHHHHHhcCHHHHHHhCHHHHHHHhCCCCCCCC
Confidence 567777777665 45788888864
No 3
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.10 E-value=5.7e+02 Score=19.15 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=11.2
Q ss_pred HHHHHHhhhhhhhHHHHHHHHH
Q 011760 323 LWYFFAEVFEFFRNFFLIVFHM 344 (478)
Q Consensus 323 ywY~f~emFd~f~~ff~~vf~~ 344 (478)
|+.++|.|....-+-..++..+
T Consensus 13 YFl~~YaiLRsiP~k~~Gvl~~ 34 (124)
T d3cx5c1 13 YLLPFYAILRSIPDKLLGVITM 34 (124)
T ss_dssp GGHHHHHHHHTSSSHHHHHHHH
T ss_pred HHHHHHHHHhcCCcchhhhHHH
Confidence 4455577775444444444333
No 4
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.76 E-value=3.5e+02 Score=19.85 Aligned_cols=29 Identities=14% Similarity=-0.037 Sum_probs=21.5
Q ss_pred HHHHHHHhCCCCCCCCCccccchHHHHHH
Q 011760 58 AEGYWLKQSSMSPYAGSMYHGSPLLLSLI 86 (478)
Q Consensus 58 ~Eg~~l~~~G~SPY~~~tyrytPLLl~Ll 86 (478)
.|.++++..|.|+..++...+|||-.+..
T Consensus 114 ~~i~~~L~~~~~~~~~d~~G~TpL~~A~~ 142 (156)
T d1bd8a_ 114 TAVVSFLAAESDLHRRDARGLTPLELALQ 142 (156)
T ss_dssp HHHHHHHHTTSCTTCCCTTSCCHHHHHHH
T ss_pred ccccccccccccccccCCCCCCHHHHHHH
Confidence 46666677788888888888888776654
No 5
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.20 E-value=1.5e+02 Score=22.19 Aligned_cols=11 Identities=18% Similarity=0.329 Sum_probs=9.5
Q ss_pred CCCCCCCcccc
Q 011760 68 MSPYAGSMYHG 78 (478)
Q Consensus 68 ~SPY~~~tyry 78 (478)
.+||+|+.||.
T Consensus 46 ~tpy~gg~f~~ 56 (117)
T d2a7la1 46 GTLYEGEKFQL 56 (117)
T ss_dssp TSTTTTCEEEE
T ss_pred CccccCCeeeE
Confidence 57999999984
No 6
>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}
Probab=3.13 E-value=1.6e+02 Score=17.40 Aligned_cols=11 Identities=36% Similarity=0.878 Sum_probs=8.2
Q ss_pred CCCCCCCcccc
Q 011760 68 MSPYAGSMYHG 78 (478)
Q Consensus 68 ~SPY~~~tyry 78 (478)
.||-.|+.||-
T Consensus 4 ~DP~TG~iYH~ 14 (31)
T d1zaka2 4 LDPVTGKIYHL 14 (31)
T ss_dssp ECTTTCCEEES
T ss_pred CCCCCCcEeEE
Confidence 47888888874
No 7
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}
Probab=3.05 E-value=1.6e+02 Score=23.10 Aligned_cols=11 Identities=18% Similarity=0.513 Sum_probs=9.7
Q ss_pred CCCCCCCcccc
Q 011760 68 MSPYAGSMYHG 78 (478)
Q Consensus 68 ~SPY~~~tyry 78 (478)
++||+|++|+.
T Consensus 43 ~TpY~gg~f~~ 53 (154)
T d1yh2a1 43 NTPYEKGVFKL 53 (154)
T ss_dssp TSTTTTCEEEE
T ss_pred CCCCCCCEEEE
Confidence 57999999985
No 8
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.01 E-value=3.8e+02 Score=19.27 Aligned_cols=24 Identities=13% Similarity=0.066 Sum_probs=15.7
Q ss_pred HHhCCCCCCCCCccccchHHHHHH
Q 011760 63 LKQSSMSPYAGSMYHGSPLLLSLI 86 (478)
Q Consensus 63 l~~~G~SPY~~~tyrytPLLl~Ll 86 (478)
++++|.||-.++.+.+|||-...-
T Consensus 119 ll~~gad~~~~d~~g~Tpl~~A~~ 142 (153)
T d1awcb_ 119 LIKYGADVHTQSKFCKTAFDISID 142 (153)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred ccccccCCcccCCCCCCHHHHHHH
Confidence 556667776677777777666544
No 9
>d2hrkb1 a.45.1.2 (B:4-121) GU4 nucleic-binding protein 1, Arc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.78 E-value=3.6e+02 Score=20.23 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=0.0
Q ss_pred cCCCcchhHHHHHHHHhhhhhhhhhhh
Q 011760 376 KSYPSVGDSALYLGLLGWFVFELADLQ 402 (478)
Q Consensus 376 k~ypT~~df~~ylsLLPl~~~~~~~~~ 402 (478)
+.+||..|...|-++.|+........+
T Consensus 59 ~~~~T~ADi~~f~~l~~~~~~~~~~~k 85 (118)
T d2hrkb1 59 TLYPTSTDVHVFEVALPLIKDLVASSK 85 (118)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHTCS
T ss_pred CCcCCHHHHHHHHHHHHHHHhhhhhhh
No 10
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.74 E-value=5.9e+02 Score=15.05 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=0.0
Q ss_pred CCCccccchhhhhchhhHHHHHHHHHHHHHH
Q 011760 1 METKKEEKKSKIKQTSSFWVWVTASVIFRLI 31 (478)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lRl~ 31 (478)
|+..|.+..-|-...+..|.++++.++.-+.
T Consensus 1 ~~pnpn~q~veLNrtsLy~GlLlifvl~vLF 31 (37)
T d2axtl1 1 MEPNPNRQPVELNRTSLYLGLLLILVLALLF 31 (37)
T ss_dssp CCCCSSCCCBCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccccchhhHHHHHHHHHHHHHHH
Done!