Query 011761
Match_columns 478
No_of_seqs 300 out of 1605
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 04:56:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011761.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011761hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1342 Histone deacetylase co 100.0 9E-140 2E-144 1054.6 34.1 400 12-411 2-402 (425)
2 PTZ00063 histone deacetylase; 100.0 4E-118 9E-123 932.3 41.1 389 15-403 2-394 (436)
3 PTZ00346 histone deacetylase; 100.0 5.1E-99 1E-103 784.9 37.0 365 14-379 17-391 (429)
4 COG0123 AcuC Deacetylases, inc 100.0 6.8E-82 1.5E-86 645.6 31.4 324 17-349 2-335 (340)
5 PF00850 Hist_deacetyl: Histon 100.0 2.3E-78 5.1E-83 614.2 22.9 297 24-328 1-311 (311)
6 KOG1343 Histone deacetylase co 100.0 1.3E-48 2.8E-53 431.6 23.0 288 34-334 463-762 (797)
7 KOG1344 Predicted histone deac 100.0 2.1E-39 4.5E-44 310.2 14.2 289 16-320 13-310 (324)
8 KOG1343 Histone deacetylase co 100.0 6.1E-35 1.3E-39 323.3 10.9 312 17-333 29-358 (797)
9 COG3914 Spy Predicted O-linked 79.6 31 0.00068 38.8 13.1 142 154-319 312-477 (620)
10 cd04502 SGNH_hydrolase_like_7 75.1 8.7 0.00019 34.9 6.4 49 255-306 44-95 (171)
11 cd01835 SGNH_hydrolase_like_3 72.8 17 0.00038 33.5 8.0 74 232-306 41-117 (193)
12 cd04237 AAK_NAGS-ABP AAK_NAGS- 71.1 11 0.00023 38.3 6.6 63 244-314 1-63 (280)
13 cd01825 SGNH_hydrolase_peri1 S 69.7 14 0.00031 33.7 6.6 52 251-307 46-103 (189)
14 KOG2749 mRNA cleavage and poly 68.4 44 0.00095 35.7 10.3 118 166-309 122-248 (415)
15 TIGR01007 eps_fam capsular exo 65.2 83 0.0018 29.6 11.0 16 173-188 44-59 (204)
16 KOG0121 Nuclear cap-binding pr 63.9 6.8 0.00015 35.9 3.0 42 151-192 73-121 (153)
17 cd01822 Lysophospholipase_L1_l 63.4 35 0.00076 30.6 7.8 47 255-307 58-108 (177)
18 cd03110 Fer4_NifH_child This p 63.3 60 0.0013 29.8 9.4 14 176-189 25-38 (179)
19 TIGR01969 minD_arch cell divis 61.5 20 0.00043 34.5 6.1 19 171-189 25-43 (251)
20 cd01832 SGNH_hydrolase_like_1 61.3 31 0.00066 31.4 7.1 62 239-306 46-111 (185)
21 TIGR03018 pepcterm_TyrKin exop 61.2 38 0.00082 32.3 7.9 24 247-270 134-157 (207)
22 cd01836 FeeA_FeeB_like SGNH_hy 60.4 25 0.00055 32.3 6.4 67 232-306 44-112 (191)
23 PF02310 B12-binding: B12 bind 58.7 21 0.00046 30.5 5.2 46 255-311 45-90 (121)
24 COG1618 Predicted nucleotide k 58.2 41 0.00089 32.2 7.2 59 230-307 79-137 (179)
25 cd04501 SGNH_hydrolase_like_4 57.9 42 0.00092 30.6 7.4 68 231-306 34-102 (183)
26 cd01828 sialate_O-acetylestera 57.3 37 0.0008 30.6 6.8 42 259-306 46-93 (169)
27 cd01841 NnaC_like NnaC (CMP-Ne 55.1 41 0.00089 30.4 6.7 69 231-306 26-96 (174)
28 cd01830 XynE_like SGNH_hydrola 55.0 29 0.00062 32.7 5.9 50 257-306 70-125 (204)
29 cd01829 SGNH_hydrolase_peri2 S 53.5 42 0.00091 31.0 6.7 53 254-306 52-114 (200)
30 TIGR02855 spore_yabG sporulati 53.5 31 0.00067 35.3 6.0 58 251-309 143-206 (283)
31 PRK05279 N-acetylglutamate syn 53.4 33 0.00072 36.8 6.7 65 243-315 7-71 (441)
32 TIGR01890 N-Ac-Glu-synth amino 53.4 19 0.00042 38.5 4.9 61 245-313 1-61 (429)
33 cd02068 radical_SAM_B12_BD B12 51.3 46 0.001 29.1 6.2 49 251-311 29-77 (127)
34 cd00840 MPP_Mre11_N Mre11 nucl 50.9 62 0.0013 30.3 7.5 59 242-308 23-84 (223)
35 cd01820 PAF_acetylesterase_lik 50.6 23 0.0005 33.7 4.5 48 257-306 85-134 (214)
36 TIGR00034 aroFGH phospho-2-deh 49.9 84 0.0018 33.2 8.7 35 40-85 115-152 (344)
37 cd01838 Isoamyl_acetate_hydrol 49.2 40 0.00087 30.7 5.7 52 254-306 53-113 (199)
38 PF05582 Peptidase_U57: YabG p 47.0 46 0.00099 34.3 6.0 58 251-309 144-207 (287)
39 PF13472 Lipase_GDSL_2: GDSL-l 46.8 15 0.00033 32.2 2.4 71 232-307 34-108 (179)
40 COG0420 SbcD DNA repair exonuc 45.5 76 0.0016 33.3 7.8 66 242-318 22-90 (390)
41 cd01844 SGNH_hydrolase_like_6 45.3 46 0.001 30.5 5.5 49 253-306 49-99 (177)
42 KOG3147 6-phosphogluconolacton 43.6 78 0.0017 32.0 6.9 85 190-277 70-158 (252)
43 TIGR01361 DAHP_synth_Bsub phos 43.1 1.9E+02 0.0042 29.1 9.9 88 231-331 134-224 (260)
44 TIGR01278 DPOR_BchB light-inde 42.7 44 0.00096 36.8 5.7 58 248-315 72-130 (511)
45 cd01833 XynB_like SGNH_hydrola 42.6 75 0.0016 28.1 6.3 43 255-299 34-76 (157)
46 cd01443 Cdc25_Acr2p Cdc25 enzy 42.1 1.3E+02 0.0027 25.7 7.4 67 231-313 42-110 (113)
47 PRK04531 acetylglutamate kinas 41.6 37 0.00079 36.5 4.7 52 255-314 25-80 (398)
48 cd00229 SGNH_hydrolase SGNH_hy 41.3 86 0.0019 26.8 6.3 55 254-308 58-114 (187)
49 PRK12755 phospho-2-dehydro-3-d 39.4 1.4E+02 0.0031 31.6 8.5 32 160-194 244-277 (353)
50 PF04321 RmlD_sub_bind: RmlD s 39.3 10 0.00022 38.1 0.1 54 253-306 43-99 (286)
51 PRK14476 nitrogenase molybdenu 38.5 74 0.0016 34.6 6.5 70 248-328 79-154 (455)
52 PRK10528 multifunctional acyl- 37.6 1.1E+02 0.0023 28.8 6.7 65 231-306 46-114 (191)
53 cd05781 DNA_polB_B3_exo DEDDy 36.5 1.8E+02 0.004 27.5 8.2 88 177-303 4-91 (188)
54 PLN02825 amino-acid N-acetyltr 36.0 66 0.0014 35.8 5.7 62 245-314 1-62 (515)
55 TIGR01285 nifN nitrogenase mol 35.9 1.1E+02 0.0024 33.0 7.4 69 248-327 78-152 (432)
56 cd07388 MPP_Tt1561 Thermus the 35.9 1.3E+02 0.0028 29.8 7.2 52 248-308 19-70 (224)
57 cd01972 Nitrogenase_VnfE_like 34.9 1.6E+02 0.0034 31.6 8.3 73 247-329 75-149 (426)
58 TIGR00583 mre11 DNA repair pro 34.5 1.5E+02 0.0032 32.0 7.9 49 242-298 24-72 (405)
59 cd01821 Rhamnogalacturan_acety 34.5 1.1E+02 0.0024 28.4 6.2 45 261-306 65-113 (198)
60 CHL00202 argB acetylglutamate 33.7 1.1E+02 0.0024 31.1 6.5 63 244-313 6-68 (284)
61 cd01971 Nitrogenase_VnfN_like 32.8 87 0.0019 33.6 5.9 58 249-316 74-132 (427)
62 cd02067 B12-binding B12 bindin 31.9 1.2E+02 0.0026 26.0 5.7 44 255-309 44-89 (119)
63 TIGR00259 thylakoid_BtpA membr 31.7 2.9E+02 0.0064 28.0 9.1 57 259-329 169-227 (257)
64 COG2755 TesA Lysophospholipase 31.4 4.2E+02 0.0091 24.7 9.8 93 253-347 68-177 (216)
65 cd06167 LabA_like LabA_like pr 31.2 1.6E+02 0.0035 26.0 6.6 42 256-312 94-135 (149)
66 PRK13236 nitrogenase reductase 31.0 51 0.0011 33.5 3.6 25 171-196 30-54 (296)
67 PRK13396 3-deoxy-7-phosphohept 30.6 3.6E+02 0.0077 28.7 9.8 124 237-385 214-345 (352)
68 COG0455 flhG Antiactivator of 30.5 1E+02 0.0022 31.2 5.6 95 168-272 25-123 (262)
69 TIGR02370 pyl_corrinoid methyl 30.1 1.1E+02 0.0025 29.2 5.7 36 255-301 129-164 (197)
70 cd03466 Nitrogenase_NifN_2 Nit 29.8 2.1E+02 0.0046 30.7 8.2 71 248-329 71-146 (429)
71 PLN02512 acetylglutamate kinas 29.7 1.3E+02 0.0029 30.9 6.4 64 243-313 29-92 (309)
72 PF09383 NIL: NIL domain; Int 29.6 25 0.00055 28.1 0.9 51 251-301 17-71 (76)
73 PF10609 ParA: ParA/MinD ATPas 29.6 1.6E+02 0.0035 24.7 5.7 55 234-308 6-61 (81)
74 PRK13398 3-deoxy-7-phosphohept 28.9 3.4E+02 0.0075 27.5 9.1 77 242-331 147-226 (266)
75 CHL00076 chlB photochlorophyll 28.7 1.9E+02 0.0042 32.0 7.8 62 248-319 72-135 (513)
76 cd01981 Pchlide_reductase_B Pc 28.6 1E+02 0.0022 32.9 5.6 57 248-314 72-130 (430)
77 cd01967 Nitrogenase_MoFe_alpha 28.6 1.4E+02 0.0029 31.5 6.4 66 248-323 74-141 (406)
78 COG1654 BirA Biotin operon rep 28.5 39 0.00085 28.2 1.9 53 268-320 14-67 (79)
79 PRK09841 cryptic autophosphory 28.3 7.1E+02 0.015 28.8 12.6 17 173-189 558-574 (726)
80 PRK11148 cyclic 3',5'-adenosin 28.2 2.1E+02 0.0046 28.4 7.4 54 246-308 39-93 (275)
81 CHL00073 chlN photochlorophyll 28.1 1.9E+02 0.004 31.9 7.4 55 250-313 86-141 (457)
82 cd07402 MPP_GpdQ Enterobacter 27.6 2E+02 0.0044 27.4 7.0 57 243-308 21-78 (240)
83 cd01839 SGNH_arylesterase_like 27.3 1.6E+02 0.0034 27.6 6.0 36 259-299 77-117 (208)
84 cd01966 Nitrogenase_NifN_1 Nit 26.7 2.5E+02 0.0054 30.2 8.1 69 249-328 69-143 (417)
85 CHL00175 minD septum-site dete 26.1 72 0.0016 31.7 3.6 21 171-191 40-60 (281)
86 cd04236 AAK_NAGS-Urea AAK_NAGS 25.8 1E+02 0.0022 31.4 4.6 61 243-313 20-80 (271)
87 cd01965 Nitrogenase_MoFe_beta_ 25.4 2E+02 0.0043 30.7 7.1 56 248-313 68-129 (428)
88 cd01494 AAT_I Aspartate aminot 24.8 1.1E+02 0.0024 26.5 4.2 41 167-209 113-158 (170)
89 TIGR02931 anfK_nitrog Fe-only 24.8 2.8E+02 0.006 30.3 8.1 70 249-329 80-160 (461)
90 TIGR02482 PFKA_ATP 6-phosphofr 24.7 2.6E+02 0.0055 29.0 7.4 98 242-340 11-133 (301)
91 COG1135 AbcC ABC-type metal io 24.7 93 0.002 32.7 4.1 59 248-306 275-337 (339)
92 KOG1615 Phosphoserine phosphat 24.7 1.8E+02 0.0038 28.8 5.8 79 287-372 91-169 (227)
93 cd01827 sialate_O-acetylestera 24.1 1.6E+02 0.0034 26.8 5.3 41 259-299 65-105 (188)
94 cd03111 CpaE_like This protein 24.0 94 0.002 26.4 3.5 15 175-189 29-43 (106)
95 cd07396 MPP_Nbla03831 Homo sap 23.3 2.4E+02 0.0052 27.9 6.8 56 246-308 26-81 (267)
96 cd01979 Pchlide_reductase_N Pc 23.2 2.8E+02 0.006 29.4 7.6 69 249-328 75-145 (396)
97 TIGR02026 BchE magnesium-proto 23.2 1.6E+02 0.0035 32.3 5.9 45 255-311 57-101 (497)
98 PF14606 Lipase_GDSL_3: GDSL-l 22.9 1.3E+02 0.0029 28.8 4.6 45 252-307 50-100 (178)
99 TIGR01279 DPOR_bchN light-inde 22.4 3.2E+02 0.0069 29.2 7.9 56 248-313 71-128 (407)
100 cd01834 SGNH_hydrolase_like_2 22.4 1.1E+02 0.0023 27.7 3.7 48 257-306 57-110 (191)
101 TIGR00619 sbcd exonuclease Sbc 22.1 3.7E+02 0.008 26.6 7.8 63 244-317 23-89 (253)
102 COG3172 NadR Predicted ATPase/ 22.0 2.4E+02 0.0053 27.2 6.0 63 251-313 104-169 (187)
103 PF02585 PIG-L: GlcNAc-PI de-N 21.6 1.6E+02 0.0035 25.5 4.6 26 248-273 87-112 (128)
104 COG2047 Uncharacterized protei 21.5 1.3E+02 0.0028 30.3 4.2 46 261-313 83-128 (258)
105 PF06925 MGDG_synth: Monogalac 21.5 99 0.0021 28.4 3.4 24 243-266 71-94 (169)
106 PF01729 QRPTase_C: Quinolinat 21.4 49 0.0011 31.3 1.3 47 269-320 99-145 (169)
107 COG1091 RfbD dTDP-4-dehydrorha 21.4 1.3E+02 0.0028 31.0 4.4 67 253-319 42-120 (281)
108 PLN02725 GDP-4-keto-6-deoxyman 21.3 1.5E+02 0.0033 29.0 4.9 53 253-305 41-98 (306)
109 cd02072 Glm_B12_BD B12 binding 21.3 2.9E+02 0.0064 25.0 6.2 46 255-311 44-90 (128)
110 PRK13233 nifH nitrogenase redu 21.2 87 0.0019 31.0 3.2 16 174-189 30-45 (275)
111 PRK07428 nicotinate-nucleotide 20.9 78 0.0017 32.6 2.8 47 269-320 215-261 (288)
112 cd05780 DNA_polB_Kod1_like_exo 20.9 5.7E+02 0.012 24.1 8.6 30 177-208 4-33 (195)
113 PRK06567 putative bifunctional 20.9 96 0.0021 37.4 3.8 14 258-271 494-507 (1028)
114 COG0683 LivK ABC-type branched 20.9 3.4E+02 0.0074 28.1 7.6 100 167-312 138-239 (366)
115 PF00581 Rhodanese: Rhodanese- 20.8 1.4E+02 0.0031 24.3 4.0 18 295-312 91-108 (113)
116 COG3033 TnaA Tryptophanase [Am 20.7 4.2E+02 0.0091 28.7 8.0 118 184-318 99-250 (471)
117 COG1891 Uncharacterized protei 20.7 1.1E+02 0.0024 29.8 3.4 63 211-275 63-127 (235)
118 PF02701 zf-Dof: Dof domain, z 20.6 37 0.0008 27.2 0.3 11 156-166 16-26 (63)
119 cd02036 MinD Bacterial cell di 20.4 94 0.002 28.0 2.9 20 170-189 23-42 (179)
120 PF06866 DUF1256: Protein of u 20.3 2E+02 0.0044 27.3 5.1 40 242-281 5-44 (163)
No 1
>KOG1342 consensus Histone deacetylase complex, catalytic component RPD3 [Chromatin structure and dynamics]
Probab=100.00 E-value=8.8e-140 Score=1054.60 Aligned_cols=400 Identities=68% Similarity=1.213 Sum_probs=384.0
Q ss_pred CCCCCCeEEEEEcCCCCCCCCCCCCCCCchHHHHHHHHHHHcCCCCCceEeCCCCCCHHHHhccChHHHHHHHHhcCchh
Q 011761 12 TDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPET 91 (478)
Q Consensus 12 ~~~~~~~v~~~yd~~~~~~~~g~~HP~~p~R~~~i~~ll~~~gL~~~~~i~~p~~At~eeL~~~Hs~~Yv~~L~~~~~~~ 91 (478)
....|+||+|+|++++|+|+||++|||+|+|++|+|+||..|||.++|++++|.+|+.+||++|||++||+||++++|++
T Consensus 2 ~~~~k~~V~y~yd~~vg~~~Yg~~hpmkP~R~~mth~Lv~~YgL~k~M~i~~p~~a~~~dm~~FHt~eYi~fL~~V~p~n 81 (425)
T KOG1342|consen 2 YSLIKRRVSYFYDPDVGNFHYGQGHPMKPHRIRMTHSLVLNYGLYKKMEIYRPDKASAQDMTRFHTDEYINFLQSVTPEN 81 (425)
T ss_pred CCcCCceEEEEecCccccccccCCCCCCcceehhhhHHHHhcchhhceeeccCCCCCHHHHHhhchHHHHHHHhhCCccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhcccCCCCcCCcchHHHHHHhhhHHHHHHHHhhcCcccEEEeCCCCCCCcccCCCccceeechHHHHHHHH
Q 011761 92 QQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILEL 171 (478)
Q Consensus 92 ~~~~~~~~~~~~~~~Dcp~f~gl~~~~~~~aGgsl~aa~~l~~g~~~iAin~~gG~HHA~~~~asGFCy~NdiaiAi~~l 171 (478)
+....+++++||+++|||+|+|+|++|++++||||.||++|++++++|||||+||+|||||++||||||+|||||||++|
T Consensus 82 ~~~~~~~~~~fNvg~DCPvF~gL~~fC~~~~GgSl~aa~kLn~~~~dIaINW~GGlHHAKK~eASGFCYvNDIVL~ILeL 161 (425)
T KOG1342|consen 82 METFNKELKQFNVGEDCPVFDGLYDYCQLYTGGSLNAAQKLNRGECDIAINWAGGLHHAKKSEASGFCYVNDIVLGILEL 161 (425)
T ss_pred ccccchHHHhcCCCCCCccccCHHHHHHHhcccchHHHHHhCCCCceEEEecCcccccccccccCcceeehHHHHHHHHH
Confidence 98877889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcEEEEeccccCCcccccccccCCceEEeecCCCC-CCCCCCCCCCcccCCCCCccEEecCCCCCCChHHHHHHHH
Q 011761 172 LKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFG-DYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFK 250 (478)
Q Consensus 172 l~~~~RVl~IDiDvHHGDGtqeaF~~d~~VltiSiH~~~-~ffPgTG~~~eiG~g~G~~~~vNVPL~~G~~D~~y~~~f~ 250 (478)
||.++||||||||+|||||||||||.++||||||||+|| +||||||++.|+|.|+||+|+|||||.+|++|++|..+|+
T Consensus 162 lK~h~RVLYIDIDvHHGDGVEeAFy~TDRVmTvSfHKyg~~fFPGTG~l~d~G~~kGkyyavNVPL~dGidD~sy~~if~ 241 (425)
T KOG1342|consen 162 LKYHKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKYGPGFFPGTGDLSDIGAGKGKYYAVNVPLKDGIDDESYESIFK 241 (425)
T ss_pred HHhCCceEEEEecccCCccHHHHHhccceeEEEEEEeccCCCCCCCCcceeccCCCCceEEEccchhccCCcHHHHHHHH
Confidence 999999999999999999999999999999999999997 6999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCcchhhhHHHHHhhHhCC
Q 011761 251 PIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGV 330 (478)
Q Consensus 251 ~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~lggGGY~~~~var~w~~~t~~llg~ 330 (478)
+||.++++.|+|++||+|||+|+|.|||||+||||++||++|+++++++|+|+|+|||||||++||||||||+|++++|+
T Consensus 242 pIi~~v~e~f~P~AiVLQCGaDSL~gDRlgcFnLsi~Gh~~Cv~fvksfn~pllvlGGGGYT~rNVARcWtYeT~v~~~~ 321 (425)
T KOG1342|consen 242 PIISKVMERFQPEAIVLQCGADSLAGDRLGCFNLSIKGHAECVKFVKSFNLPLLVLGGGGYTLRNVARCWTYETGVLLDQ 321 (425)
T ss_pred HHHHHHHHHhCCceEEEEcCCccccCCccceeeecchhHHHHHHHHHHcCCcEEEecCCccchhhhHHHHHHHhhhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccccccCCCCccccCCCCCCCcCcHHHHHHHHHHHHHHhhcCCCCCCccceeCCCCCCCCCCCcCCcCCCC
Q 011761 331 EVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADEDQEDGDE 410 (478)
Q Consensus 331 ~~~~~iP~~~~~~~~~p~~~l~~~~~~~~~~n~~~~l~~i~~~~~~~l~~l~~apsv~~~~~~~~~~~~~~~~~~~~~~~ 410 (478)
+++++||+|+||+||+|||+|++.+++|+|+||++||++|++++++||+++++|||||||.+|+........+++++++.
T Consensus 322 ~~~~elP~n~y~~yF~PDy~l~~~~~~~~n~Nt~~~l~~i~~~~~enL~~l~~apSVqm~~~p~~~~d~~~~~~~~~~d~ 401 (425)
T KOG1342|consen 322 ELPNELPYNDYFEYFGPDYKLHIDPSNMENFNTPHYLESIRNEILENLRMLQHAPSVQMQMIPNPDFDEDMVEDEKDPDL 401 (425)
T ss_pred cccccCCCccchhhhCCCcccccCccchhcccCHHHHHHHHHHHHHHHHhccCCCcccccccCCCccchhhhhhhhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999972111111234445555
Q ss_pred C
Q 011761 411 R 411 (478)
Q Consensus 411 ~ 411 (478)
|
T Consensus 402 ~ 402 (425)
T KOG1342|consen 402 R 402 (425)
T ss_pred c
Confidence 5
No 2
>PTZ00063 histone deacetylase; Provisional
Probab=100.00 E-value=4.3e-118 Score=932.25 Aligned_cols=389 Identities=64% Similarity=1.171 Sum_probs=373.4
Q ss_pred CCCeEEEEEcCCCCCCCCCCCCCCCchHHHHHHHHHHHcCCCCCceEeCCCCCCHHHHhccChHHHHHHHHhcCchhhHH
Q 011761 15 VKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQD 94 (478)
Q Consensus 15 ~~~~v~~~yd~~~~~~~~g~~HP~~p~R~~~i~~ll~~~gL~~~~~i~~p~~At~eeL~~~Hs~~Yv~~L~~~~~~~~~~ 94 (478)
.|+||+|+||++++.|++|++|||+|.|+++++++|.++||.+++++++|++||.++|++||+++||++|++.++++..+
T Consensus 2 ~~~~v~~~yd~~~~~h~~g~~HP~~P~Rl~~~~~ll~~~gl~~~~~~~~p~~At~eeL~~vHs~~YI~~L~~~~~~~~~~ 81 (436)
T PTZ00063 2 MRKRVSYFYDPDIGSYYYGPGHPMKPQRIRMAHALILSYDLYKHMEIYRPHKSVEPELVLFHDEEYVDFLSSISPENYRD 81 (436)
T ss_pred CCceEEEEECccccCcCCcCcCCcChHHHHHHHHHHHhCCCcccCeEecCCCCCHHHHHHhCCHHHHHHHHHhChhhccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999988765433
Q ss_pred HHHhhhhcccC--CCCcCCcchHHHHHHhhhHHHHHHHHhhcCcccEEEeCCCCCCCcccCCCccceeechHHHHHHHHH
Q 011761 95 QLRQLKRFNVG--EDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELL 172 (478)
Q Consensus 95 ~~~~~~~~~~~--~Dcp~f~gl~~~~~~~aGgsl~aa~~l~~g~~~iAin~~gG~HHA~~~~asGFCy~NdiaiAi~~ll 172 (478)
....+.+|+++ .|||+|+++|++|+++|||||.||+++++|++++||||+||+|||++++|+||||||||||||++|+
T Consensus 82 ~~~~~~~f~lg~~~D~pv~~gl~~~a~~aaGgsl~Aa~~l~~g~~~iAin~~GG~HHA~~~~A~GFC~~NdiaiAi~~L~ 161 (436)
T PTZ00063 82 FTYQLKRFNVGEATDCPVFDGLFEFQQSCAGASIDGAYKLNNHQADICVNWSGGLHHAKRSEASGFCYINDIVLGILELL 161 (436)
T ss_pred chhhhhhcccCCCCCCCcccHHHHHHHHHHhHHHHHHHHHHcCCCCEEeeCCCCCCCCccCCCCceeeecHHHHHHHHHH
Confidence 22346688898 4999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcEEEEeccccCCcccccccccCCceEEeecCCCCCCCCCCCCCCcccCCCCCccEEecCCCCCCChHHHHHHHHHH
Q 011761 173 KQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPI 252 (478)
Q Consensus 173 ~~~~RVl~IDiDvHHGDGtqeaF~~d~~VltiSiH~~~~ffPgTG~~~eiG~g~G~~~~vNVPL~~G~~D~~y~~~f~~i 252 (478)
+.++||||||||||||||||+|||.+++|||+|||++++||||||...++|.|.|++|++||||++|++|++|+.+|+++
T Consensus 162 ~~~~RVliID~DvHHGdGtqe~F~~~~~VltvS~H~~~~ffPgtG~~~e~G~g~G~g~~vNvPL~~G~~D~~Y~~~f~~i 241 (436)
T PTZ00063 162 KYHARVMYIDIDVHHGDGVEEAFYVTHRVMTVSFHKFGDFFPGTGDVTDIGVAQGKYYSVNVPLNDGIDDDSFVDLFKPV 241 (436)
T ss_pred HhCCeEEEEeCCCCCCcchHHHhccCCCeEEEEeccCCCcCCCCCCccccCCCCCCceEEEeeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCcchhhhHHHHHhhHhCC--
Q 011761 253 IGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGV-- 330 (478)
Q Consensus 253 v~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~lggGGY~~~~var~w~~~t~~llg~-- 330 (478)
|.|++++|+||+||+|||+|++.+||||+|+||++||.+|+++++++++|+++||||||++++|||||+++|++++|.
T Consensus 242 i~~~i~~f~Pd~IvvqaG~D~~~~DpLg~l~Lt~~g~~~~~~~~~~~~~pil~l~gGGY~~~~lar~w~~~t~~~~~~~~ 321 (436)
T PTZ00063 242 ISKCVEVYRPGAIVLQCGADSLTGDRLGRFNLTIKGHAACVEFVRSLNIPLLVLGGGGYTIRNVARCWAYETGVILNKHD 321 (436)
T ss_pred HHHHHHHhCCCEEEEECCccccCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEeCccCCchHHHHHHHHHHHHHhCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCcccccccCCCCccccCCCCCCCcCcHHHHHHHHHHHHHHhhcCCCCCCccceeCCCCCCCCCCCc
Q 011761 331 EVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADE 403 (478)
Q Consensus 331 ~~~~~iP~~~~~~~~~p~~~l~~~~~~~~~~n~~~~l~~i~~~~~~~l~~l~~apsv~~~~~~~~~~~~~~~~ 403 (478)
+++++||+|+||+||+|+|+|++.+++|+|+|+++||++|++++++||+.+++|||||||.+||++...+.++
T Consensus 322 ~~~~~iP~~~~~~~~~~~~~l~~~~~~~~n~n~~~~l~~~~~~~~~~l~~~~~ap~v~~~~~~~~~~~~~~~~ 394 (436)
T PTZ00063 322 EMSDQISLNDYYDYYAPDFQLHLQPSNIPNYNSPEHLEKIKVKILENLRYLEHAPGVQFAYVPPDFFDRDIDD 394 (436)
T ss_pred cCCccCCCCcchhhcCCCeEeecCcccccCCCCHHHHHHHHHHHHHHHhcCCCCCeeccccCCcccccccccc
Confidence 6999999999999999999999999999999999999999999999999999999999999999887765544
No 3
>PTZ00346 histone deacetylase; Provisional
Probab=100.00 E-value=5.1e-99 Score=784.85 Aligned_cols=365 Identities=41% Similarity=0.731 Sum_probs=333.8
Q ss_pred CCCCeEEEE----EcCCCCCCCCCCCCCCCchHHHHHHHHHHHcCCCCCceEeCCCCCCHHHHhccChHHHHHHHHhcCc
Q 011761 14 GVKRKVCYF----YDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITP 89 (478)
Q Consensus 14 ~~~~~v~~~----yd~~~~~~~~g~~HP~~p~R~~~i~~ll~~~gL~~~~~i~~p~~At~eeL~~~Hs~~Yv~~L~~~~~ 89 (478)
..+++|+|+ |-+++..|+|+++|||+|.|+++++++|+++||..+++++.|++||.++|++||+++||++|++...
T Consensus 17 ~~~~~~~~~~~~~y~~~~~~~~~~~~HPe~P~Rl~~~~~ll~~~gl~~~~~~~~p~~At~eeL~~vHs~~YI~~l~~~~~ 96 (429)
T PTZ00346 17 ESRGRVALIDTSGYASDMNISAFVPQHAMKPYRVLAAMEIVRSLKIDAHCRTVVPPLVKVEELMAYHTDTYLANLGLHSC 96 (429)
T ss_pred cccceeEEEecCccccccccccCCCcCCCCHHHHHHHHHHHHhcCCcccCeeecCCCCCHHHHHHhCCHHHHHHHHHhcc
Confidence 356789999 6667788999999999999999999999999999999999999999999999999999999987533
Q ss_pred hhhHHHHHhhhhcccCCCCcCCcchHHHHHHhhhHHHHHHHHhhcCcccEEEeCCCCCCCcccCCCccceeechHHHHHH
Q 011761 90 ETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAIL 169 (478)
Q Consensus 90 ~~~~~~~~~~~~~~~~~Dcp~f~gl~~~~~~~aGgsl~aa~~l~~g~~~iAin~~gG~HHA~~~~asGFCy~NdiaiAi~ 169 (478)
...... .....+.++.|||+|+++|++|++++||+|.||+++++|++++||||+||+|||++++|+||||||||||||+
T Consensus 97 ~~~~~~-~~~~~~~~d~Dtpv~~~~~~~a~laaGgsl~Aa~~v~~g~~~~Ai~~pGG~HHA~~~~a~GFC~fNdvAIAa~ 175 (429)
T PTZ00346 97 RSWLWN-AETSKVFFSGDCPPVEGLMEHSIATASGTLMGAVLLNSGQVDVAVHWGGGMHHSKCGECSGFCYVNDIVLGIL 175 (429)
T ss_pred cccccc-cccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEeCCCCcCcCCCCCCCcchHHhHHHHHHH
Confidence 211100 0122355678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcEEEEeccccCCcccccccccCCceEEeecCCCC-CCCCCCCCCCcccCCCCCccEEecCCCCCCChHHHHHH
Q 011761 170 ELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFG-DYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYL 248 (478)
Q Consensus 170 ~ll~~~~RVl~IDiDvHHGDGtqeaF~~d~~VltiSiH~~~-~ffPgTG~~~eiG~g~G~~~~vNVPL~~G~~D~~y~~~ 248 (478)
+|++.++||||||||||||||||+|||++++|||||||+++ .||||||...++|.|.|++|++||||++|++|++|+.+
T Consensus 176 ~ll~~~~RVliID~DVHHGnGTqeiF~~dp~Vl~vSiHq~~~~fyPgtG~~~e~G~g~G~g~~vNVPL~~G~~D~~Yl~~ 255 (429)
T PTZ00346 176 ELLKCHDRVLYVDIDMHHGDGVDEAFCTSDRVFTLSLHKFGESFFPGTGHPRDVGYGRGRYYSMNLAVWDGITDFYYLGL 255 (429)
T ss_pred HHHHcCCeEEEEeCCCCCCchHHHHHcCCCCeEEEEecCCCCCCCCCCCCccccCCCCCceeEEeeeCCCCcCHHHHHHH
Confidence 99999999999999999999999999999999999999995 59999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCcchhhhHHHHHhhHh
Q 011761 249 FKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVAL 328 (478)
Q Consensus 249 f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~lggGGY~~~~var~w~~~t~~ll 328 (478)
|+++|.|++++|+||+||||||||++.+||||+|+||.+||.+|+++++++++|++++|||||++.++||||+++|++++
T Consensus 256 f~~ii~p~l~~F~PdlIvvsaG~Da~~~DpLg~l~LT~~g~~~~~~~l~~~~~plv~vleGGY~~~~lar~w~~~t~~l~ 335 (429)
T PTZ00346 256 FEHALHSIVRRYSPDAIVLQCGADSLAGDRLGLLNLSSFGHGQCVQAVRDLGIPMLALGGGGYTIRNVAKLWAYETSILT 335 (429)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCCCCCCCceeCHHHHHHHHHHHHhcCCCEEEEeCCcCCccHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCC--CC--CcccccccCCCCccccCCCCCCCcC-cHHHHHHHHHHHHHHhh
Q 011761 329 GVEVDDK--MP--QHEYYEYFGPDYTLHVAPSNMENKN-SRQLLEEIRNKLLEYLS 379 (478)
Q Consensus 329 g~~~~~~--iP--~~~~~~~~~p~~~l~~~~~~~~~~n-~~~~l~~i~~~~~~~l~ 379 (478)
|.++|++ || +.+|.+||+|+|+|++.+++++|.| +....+++.++++++++
T Consensus 336 g~~i~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (429)
T PTZ00346 336 GHPLPPNTVLPVAEMPLSGWLFQDSPLLIVAQDRSNHVLPGLHCQRAYQMMTEQID 391 (429)
T ss_pred CCCCCCCCCCCCCCCchhhhhcCCCccccccccccccCCCcchhHHHHHHHHHHHH
Confidence 9999866 78 4689999999999999888888887 46666666666655554
No 4
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=6.8e-82 Score=645.59 Aligned_cols=324 Identities=33% Similarity=0.557 Sum_probs=299.9
Q ss_pred CeEEEEEcCCCCCCCCCCCCCCCchHHHHHHHHHHHcCCCCCceEeCCCCCCHHHHhccChHHHHHHHHhcCchhhHHHH
Q 011761 17 RKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQL 96 (478)
Q Consensus 17 ~~v~~~yd~~~~~~~~g~~HP~~p~R~~~i~~ll~~~gL~~~~~i~~p~~At~eeL~~~Hs~~Yv~~L~~~~~~~~~~~~ 96 (478)
+++.++|++.+..|.++.+|||+|.|++++.++|++.++...+++++|++++.++|+++|+++||++|++.++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~Hpe~p~R~~~~~~~l~~~~~~~~~~~~~p~~~~~~~l~~vH~~~yv~~l~~~~~~~~---- 77 (340)
T COG0123 2 MKTALIYHPEFLEHEPPPGHPENPDRLRLILELLESSGLPDSLELVEPRPATLEELLLVHSPDYVEFLESLSEEEG---- 77 (340)
T ss_pred CcceEeeCHHHhcCCCCCCCCCChHHHHHHHHHHHhcCccccccccCCCcCCHHHHHhhCCHHHHHHHHHhccccc----
Confidence 4688999999999999999999999999999999999988899999999999999999999999999999876511
Q ss_pred HhhhhcccCCCCcCCcchHHHHHHhhhHHHHHHHHhhcCcccEEEeCCCCCCCcccCCCccceeechHHHHHHHHHhc-C
Q 011761 97 RQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQ-H 175 (478)
Q Consensus 97 ~~~~~~~~~~Dcp~f~gl~~~~~~~aGgsl~aa~~l~~g~~~iAin~~gG~HHA~~~~asGFCy~NdiaiAi~~ll~~-~ 175 (478)
.+.++.|||+++++|++|++++|++++|++.+.+|+..++++|.||+|||++++++|||+|||+||||++|+++ .
T Consensus 78 ----~~~~d~d~~~s~~~~~~a~~a~G~al~A~~~v~~g~~~~~~~~rppgHHA~~~~a~GFC~fNn~Aiaa~~l~~~~~ 153 (340)
T COG0123 78 ----YGNLDGDTPVSPGTYEAARLAAGGALTAVDAVLEGEDNAFALVRPPGHHAGRDRASGFCLFNNVAIAAKYLLKKGV 153 (340)
T ss_pred ----cccccCCCccChHHHHHHHHHhhHHHHHHHHHHcCccceEEECCCCcccccCCCCceeeeecHHHHHHHHHHHcCC
Confidence 46788999999999999999999999999999999877888998888999999999999999999999999996 7
Q ss_pred CcEEEEeccccCCcccccccccCCceEEeecCCCC-CCCCCCCCCCcccCCCCCccEEecCCCCCCChHHHHHHHHHHHH
Q 011761 176 ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFG-DYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIG 254 (478)
Q Consensus 176 ~RVl~IDiDvHHGDGtqeaF~~d~~VltiSiH~~~-~ffPgTG~~~eiG~g~G~~~~vNVPL~~G~~D~~y~~~f~~iv~ 254 (478)
+||+|||||+|||||||+|||++++|+|+|+|+++ .||||||..+++|.|+ ++|++|||||+|++|++|+.+|+.+|.
T Consensus 154 ~RVaIiD~DvHHGnGTqeify~~~~V~~~S~H~~~~~~yPgtg~~~e~g~g~-~g~~vNiPLp~g~~d~~y~~a~~~~v~ 232 (340)
T COG0123 154 KRVAIIDFDVHHGNGTQEIFYDDDDVLTVSLHQDGRPFYPGTGGADEIGEGK-EGNNVNIPLPPGTGDDSYLEALEEIVL 232 (340)
T ss_pred CcEEEEEecCCCChhhHHHHccCCCeEEEeccCCCCCCCCcCCCccccccCc-ccceEeeecCCCCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999994 7999999999999999 999999999999999999999999999
Q ss_pred HHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhc----CCCEEEEeCCCCCCcchhhhHHHHHhhHhCC
Q 011761 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF----NVPLLLLGGGGYTIRNVARCWCYETGVALGV 330 (478)
Q Consensus 255 pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~----~~pll~lggGGY~~~~var~w~~~t~~llg~ 330 (478)
|++++|+||+||||||||+|.+||||+|+||.++|.+|+++++++ ++|+++++||||+..+++++|++++..+.|.
T Consensus 233 ~~~~~f~PdlvivsaG~D~h~~Dpl~~~~Lt~~~~~~~~~~v~~~a~~~~~~~~~vleGGY~~~~l~~~~~~~~~~l~~~ 312 (340)
T COG0123 233 PLLEEFKPDLVIVSAGFDAHRGDPLGRLNLTEEGYAKIGRAVRKLAEGYGGPVVAVLEGGYNLDALARSLVAFLAGLAGL 312 (340)
T ss_pred HHHHhcCCCEEEEecCcccCCCCccceeecCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCChHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999988765 5699999999999999999999999999996
Q ss_pred c---CCCCCCCc-ccccccCCCC
Q 011761 331 E---VDDKMPQH-EYYEYFGPDY 349 (478)
Q Consensus 331 ~---~~~~iP~~-~~~~~~~p~~ 349 (478)
. .+..+|.. +++..+.+++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~ 335 (340)
T COG0123 313 VEEELEEPLPEDLELRRAFRADY 335 (340)
T ss_pred Cccccccccccchhhhhhhccch
Confidence 4 33444443 4555555554
No 5
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=100.00 E-value=2.3e-78 Score=614.21 Aligned_cols=297 Identities=35% Similarity=0.645 Sum_probs=236.1
Q ss_pred cCCCCCCCCCCCCCCCchHHHHHHHHH-HHcCCCCCceEeCCCCCCHHHHhccChHHHHHHHHhcCchhhHHHHHhhhhc
Q 011761 24 DPEVGNYYYGQGHPMKPHRIRMTHALL-AHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRF 102 (478)
Q Consensus 24 d~~~~~~~~g~~HP~~p~R~~~i~~ll-~~~gL~~~~~i~~p~~At~eeL~~~Hs~~Yv~~L~~~~~~~~~~~~~~~~~~ 102 (478)
+|.|. +.++++|||+|+|++.+.+.| +.++|++. ++|+.++|++|||++||++|++.+.............+
T Consensus 1 ~~~~~-~~~~~~Hpe~p~R~~~i~~~L~~~~~l~~~------~~a~~~~L~~vH~~~Yv~~l~~~~~~~~~~~~~~~~~~ 73 (311)
T PF00850_consen 1 HPQYQ-HQLGDGHPESPERLESIVEALKESYGLLPR------RPATDEELLRVHDPEYVDFLESASKEAKEEEEAGSPEF 73 (311)
T ss_dssp ----T-T-CCTTSSSCTHHHHHHHHHHHHTTTGGGG----------HHHHTTTS-HHHHHHHHHHHHHTSGCTHHHHHHH
T ss_pred CCccc-CCCCCCcCCCHHHHHHHHHHHHHhcCCCCC------CCCCHHHHHHcCCHHHHHHHHHhccccccccccccccc
Confidence 46777 889999999999999555554 44587654 99999999999999999999987543322110001111
Q ss_pred -c-c-CCCCcCCcchHHHHHHhhhHHHHHHHHhhcC--cccEEEeCCCCCCCcccCCCccceeechHHHHHHHHHhc--C
Q 011761 103 -N-V-GEDCPVFDGLFSFCQTYAGGSVGGAVKLNHG--LCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQ--H 175 (478)
Q Consensus 103 -~-~-~~Dcp~f~gl~~~~~~~aGgsl~aa~~l~~g--~~~iAin~~gG~HHA~~~~asGFCy~NdiaiAi~~ll~~--~ 175 (478)
. + ..|||+++++++++++++|+++.|++.+.+| +..+|++++|| |||++++++||||||||||||++|++. .
T Consensus 74 ~~~~~~~dt~~~~~~~~~a~~a~g~~l~a~~~v~~g~~~~~~a~~rppg-HHA~~~~a~GFC~~Nnvaiaa~~l~~~~~~ 152 (311)
T PF00850_consen 74 PNILDDGDTPISPGSWEAARLAAGGTLEAADAVLSGEIKNAFALVRPPG-HHAERDRAMGFCYFNNVAIAAKYLRKKYGL 152 (311)
T ss_dssp CCBTSSSSSEBCTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEEEESS---TT-BTTBBBTTBSS-HHHHHHHHHHHTTTT
T ss_pred ccccCCCCcceehHHHHHHHHHHHHHHHHHHhhhcccccceeeecCccc-cccCcCcCcceeeeccHHHHHHHHhhcccc
Confidence 0 1 5799999999999999999999999999999 45688887766 999999999999999999999999985 3
Q ss_pred CcEEEEeccccCCcccccccccCCceEEeecCCC-CCCCC-CCCCCCcccCCCCCccEEecCCCCCCChHHHHHHHHHHH
Q 011761 176 ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF-GDYFP-GTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPII 253 (478)
Q Consensus 176 ~RVl~IDiDvHHGDGtqeaF~~d~~VltiSiH~~-~~ffP-gTG~~~eiG~g~G~~~~vNVPL~~G~~D~~y~~~f~~iv 253 (478)
+||+|||||+|||||||++||+|++|+|+|||++ ..||| |||..+++|.|+|+++++||||++|++|++|+.+|+++|
T Consensus 153 ~rV~iiD~DvHhGnGtq~if~~d~~V~~~SiH~~~~~~yP~~tG~~~e~G~~~g~g~~~NipL~~g~~d~~y~~~~~~~l 232 (311)
T PF00850_consen 153 KRVAIIDFDVHHGNGTQEIFYDDPRVLYISIHQYPGNFYPFGTGFPDEIGEGKGKGYNLNIPLPPGTGDDEYLEAFEEIL 232 (311)
T ss_dssp SSEEEEE-SSS--HHHHHHTTT-SSEEEEEEEE-CTTSTTTSS--TT--ESGGGTTSEEEEEE-TTEBHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCcccchhheeCCCCEEecCccccccccCCCcCCCccccCCCcccceeEecccccccchHHHHHHHhhcc
Confidence 8999999999999999999999999999999998 56999 999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCC----CEEEEeCCCCCCcchhhhHHHHHhhHh
Q 011761 254 GKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNV----PLLLLGGGGYTIRNVARCWCYETGVAL 328 (478)
Q Consensus 254 ~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~----pll~lggGGY~~~~var~w~~~t~~ll 328 (478)
.|++++|+||+||||||||++.+||+|.|+||++||.+++++|+++.. |+++++||||++.++++||+.+++.|.
T Consensus 233 ~~~~~~f~P~~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~~~~~a~~~~~~~v~vleGGY~~~~~~~~~~~~~~~L~ 311 (311)
T PF00850_consen 233 LPALEEFRPDLIVVSAGFDAHAGDPLGGLNLTPEGYRELTRRLKSLAKRHCIPVVSVLEGGYNPESLARSWAAVIAALA 311 (311)
T ss_dssp HHHHHHHT-SEEEEEE-STTBTTSTT-SEBB-HHHHHHHHHHHHTTHSHHSGCEEEEE-S-SSHHHHHHHHHHHHHHH-
T ss_pred ccchhcccCcEEEEccCcccchhccccCcCCCHHHHHHHHHHHHHHHHhcCCcEEEEECCCCChhHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999998744 999999999999999999999998873
No 6
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics]
Probab=100.00 E-value=1.3e-48 Score=431.64 Aligned_cols=288 Identities=25% Similarity=0.413 Sum_probs=237.1
Q ss_pred CCCCCCchHHHHHHHHHHHcCCCCCceEeCCCCCCHHHHhccChHHHHHHHHhcCchhhHHHH--HhhhhcccCCCCcCC
Q 011761 34 QGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQL--RQLKRFNVGEDCPVF 111 (478)
Q Consensus 34 ~~HP~~p~R~~~i~~ll~~~gL~~~~~i~~p~~At~eeL~~~Hs~~Yv~~L~~~~~~~~~~~~--~~~~~~~~~~Dcp~f 111 (478)
.+||..|.| .+..+. +||+.+|+.+ ||.++|+.||+..|+..+.+.......... .....-+++ +-
T Consensus 463 ~~~~~~p~r--~~t~~~--~gl~~~c~r~----at~~el~~vHs~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----~~ 530 (797)
T KOG1343|consen 463 SRSPESPAR--FTTGLH--TGLLGKCERI----ATLEELQLVHSEAHVLLYGSRKLLGDLSLKFESRLPCGGIG----VD 530 (797)
T ss_pred cCCcccchh--hhcccc--cccccccccc----cchhhhhhcccchhhcccchhhhcccccchhhhhcccccee----ec
Confidence 478999999 333333 8999999877 999999999999999986522111100000 000111111 12
Q ss_pred cchHHHHHHhhhHHHHHHHHh--hcCcc--cEEEeCCCCCCCcccCCCccceeechHHHHHHHHHhcC--CcEEEEeccc
Q 011761 112 DGLFSFCQTYAGGSVGGAVKL--NHGLC--DIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQH--ERVLYVDIDI 185 (478)
Q Consensus 112 ~gl~~~~~~~aGgsl~aa~~l--~~g~~--~iAin~~gG~HHA~~~~asGFCy~NdiaiAi~~ll~~~--~RVl~IDiDv 185 (478)
..+|.....++|+...++..+ ..++. .+|+.+++| |||....++|||+|||+|||+++|.... .|||||||||
T Consensus 531 ~dt~~~~~~ssga~~~av~~v~~~~~~~~~g~avvRppG-Hha~~~~a~gfc~fn~vaiaak~l~~~~~~~rilivdwDv 609 (797)
T KOG1343|consen 531 SDTWWNELHSSGAARLAVGCVIELAFKVASGFAVVRPPG-HHAEASTAMGFCFFNSVAIAAKLLQQRSKASRILIVDWDV 609 (797)
T ss_pred ccHHHHHHHHHHHHHHhcchhhhhhhhhhcceeEecCCc-cccccCCcceeeeecchhhhhHHhhhhhhhcceEEEeecc
Confidence 344555555555555554443 11122 289999999 9999999999999999999999988654 8999999999
Q ss_pred cCCcccccccccCCceEEeecCCC--CCCCCCCCCCCcccCCCCCccEEecCCCCCCC-hHHHHHHHHHHHHHHHHhcCC
Q 011761 186 HHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIRDIGYSKGKFYSLNVPLDDGID-DESYHYLFKPIIGKVMEVFRP 262 (478)
Q Consensus 186 HHGDGtqeaF~~d~~VltiSiH~~--~~ffPgTG~~~eiG~g~G~~~~vNVPL~~G~~-D~~y~~~f~~iv~pv~~~f~P 262 (478)
|||||||.+||.+++||++|+|++ |+|||++|..+++|.+.|+++++|||++.|.. |.+|+.+|+.++.|++++|.|
T Consensus 610 hhgngtq~~f~~~~~vlyislhr~~~G~~fp~~g~~~e~g~~~g~g~~vNv~~~~~~~~D~ey~~a~~~vv~Pia~~F~p 689 (797)
T KOG1343|consen 610 HHGNGTQQAFYSDPSVLYISLHRHDDGNFFPGSGAPDEVGKGEGVGFNVNVAWTGGLDPDAEYLAAFRTVVMPIAYEFNP 689 (797)
T ss_pred cCCcceeeeeccCccccccccchhccCCcCCCCCCchhcccccccceeecccccCCCCCCHHHHHHHHHhhHHHHHHhCC
Confidence 999999999999999999999999 78999999999999999999999999987554 699999999999999999999
Q ss_pred CEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhc-CCCEEEEeCCCCCCcchhhhHHHHHhhHhCCcCCC
Q 011761 263 GAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF-NVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDD 334 (478)
Q Consensus 263 d~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~-~~pll~lggGGY~~~~var~w~~~t~~llg~~~~~ 334 (478)
|+|++++|||+..+||||+..+|.++|+.+++.|+.+ ++++++.++|||+.++++.+...++..|+|.+.|.
T Consensus 690 d~VlvSagfDaa~~dplg~~~vt~~~~~~lt~~l~~lagGRvv~~LEggy~lt~is~s~~~~~~~llg~~~p~ 762 (797)
T KOG1343|consen 690 DLVLVSAGFDAAEGDPLGGYKVTAECFGYLTQQLMGLAGGRVVLALEGGYDLTAISDSAEACVRALLGDSLPP 762 (797)
T ss_pred CeEEEeccccccccCccccccccHhHHHHHHHHHHHhcCCcEEEEecCCcchhhhhHHHHHHHHhccCCCCCC
Confidence 9999999999999999999999999999999999887 79999999999999999999999999999987763
No 7
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=100.00 E-value=2.1e-39 Score=310.23 Aligned_cols=289 Identities=29% Similarity=0.473 Sum_probs=236.6
Q ss_pred CCeEEEEEcCCCCCCCCC--CCCCCCchHHHHHHHHHHHcCCCCCceEeCCCCCCHHHHhccChHHHHHHHHhcCchhhH
Q 011761 16 KRKVCYFYDPEVGNYYYG--QGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQ 93 (478)
Q Consensus 16 ~~~v~~~yd~~~~~~~~g--~~HP~~p~R~~~i~~ll~~~gL~~~~~i~~p~~At~eeL~~~Hs~~Yv~~L~~~~~~~~~ 93 (478)
..|+.++|++.|.--..| +.||+...+-..++++|.+.+++..-.+++|.++|.++|+++|+.+|++.|+....-...
T Consensus 13 ~~k~pIvyS~~Y~i~FmGlEkLHPFDa~Kwg~v~kfL~~~~~l~d~~lvEp~e~t~e~L~rvHtr~YLkslr~s~~vA~I 92 (324)
T KOG1344|consen 13 AGKLPIVYSRNYAIRFMGLEKLHPFDAAKWGHVHKFLCAMNLLTDETLVEPNEATKEDLLRVHTRKYLKSLRWSIKVAQI 92 (324)
T ss_pred cccccEEecCccceeecchhhcCcCcccchhHHHHHHHHhccccccccccCcccCHHHHHhHhhHHHHHHhhccceeeEE
Confidence 457999999998533333 679999999999999999999998888999999999999999999999999864321110
Q ss_pred HHHHhhhhcccCCCCcCCcchHHHHHHhhhHHHHHHHH-hhcCcccEEEeCCCCCCCcccCCCccceeechHHHHHHHHH
Q 011761 94 DQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVK-LNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELL 172 (478)
Q Consensus 94 ~~~~~~~~~~~~~Dcp~f~gl~~~~~~~aGgsl~aa~~-l~~g~~~iAin~~gG~HHA~~~~asGFCy~NdiaiAi~~ll 172 (478)
.+..-.+.-+.|.+-..+....++.+|||+.|+.. +..| .|||..||+|||..+++.|||.+.||.+||..|-
T Consensus 93 ---~EiP~v~flPn~~iqrk~LrPlR~QagGtilA~kLAle~G---WAINvGGGFHHcss~rGGGFC~yADItl~I~~lF 166 (324)
T KOG1344|consen 93 ---TEIPFVGFLPNCIIQRKLLRPLRLQAGGTILAAKLALERG---WAINVGGGFHHCSSSRGGGFCAYADITLAIFFLF 166 (324)
T ss_pred ---EeccccccCchhhhhhhhccceeeccCceeehhhhhhhcC---eEEeecCccceeccCCCCceeehhhHHHHHHHHH
Confidence 11122233356777777777788899999999974 4455 9999999999999999999999999999998775
Q ss_pred hc--CCcEEEEeccccCCcccccccccCCceEEeecCCCCCCCCCCCCCCcccCCCCCccEEecCCCCCCChHHHHHHHH
Q 011761 173 KQ--HERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFK 250 (478)
Q Consensus 173 ~~--~~RVl~IDiDvHHGDGtqeaF~~d~~VltiSiH~~~~ffPgTG~~~eiG~g~G~~~~vNVPL~~G~~D~~y~~~f~ 250 (478)
.+ ..|++|||+|.|+|||-|.-|.++ .|..+.+.. .-.||+.-...+ .-..-|.|..|+.|++|+.-++
T Consensus 167 er~~isr~mivDLDAHQGNghErdf~~~-~vyi~d~yn-r~iyp~D~~Ak~-------~Ir~kVEl~~gTeddeYLrkl~ 237 (324)
T KOG1344|consen 167 ERKAISRAMIVDLDAHQGNGHERDFEDD-AVYIFDMYN-RFIYPRDHVAKE-------SIRCKVELRNGTEDDEYLRKLK 237 (324)
T ss_pred hhhhhhheEEEecccccCCccccccccc-eeehhhhhh-hhccchhHHHHH-------HhhheeeeecCCCchHHHHHHH
Confidence 44 589999999999999999999877 666655543 236887543322 1234577889999999999999
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHH----HHHHHHhcCCCEEEEeCCCCCCcchhhhH
Q 011761 251 PIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAE----CVKFMRSFNVPLLLLGGGGYTIRNVARCW 320 (478)
Q Consensus 251 ~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~----~~~~l~~~~~pll~lggGGY~~~~var~w 320 (478)
+.+...+.+|+||+||+.||.|.+.|||||.+.+|++|.-+ ++++.+..++|+++|..|||-. ..||-.
T Consensus 238 r~l~~sl~ef~Pd~VvYNAGTDiLeGDpLG~L~ISp~Gi~~RDelVFr~~R~~~iPvvMltSGGY~K-~sArvI 310 (324)
T KOG1344|consen 238 RCLMQSLAEFRPDMVVYNAGTDILEGDPLGNLAISPEGIIERDELVFRTFRALGIPVVMLTSGGYLK-ASARVI 310 (324)
T ss_pred HHHHHHHHhhCCcEEEEeCCCccccCCCCCCeeecccccchhhHHHHHHHHHcCCcEEEEecCceeh-hhhhhh
Confidence 99999999999999999999999999999999999999864 6778889999999999999965 344443
No 8
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics]
Probab=100.00 E-value=6.1e-35 Score=323.28 Aligned_cols=312 Identities=21% Similarity=0.279 Sum_probs=260.9
Q ss_pred CeEEEEEcCCCCCCC--CCCCCC-CCchHHHHHHHHHHHcCCCCCceEeCC-CCCCHHHHhccChHHHHHHHHhcCchhh
Q 011761 17 RKVCYFYDPEVGNYY--YGQGHP-MKPHRIRMTHALLAHYGLLQNMQVLKP-FPARERDLCRFHADDYVSFLRSITPETQ 92 (478)
Q Consensus 17 ~~v~~~yd~~~~~~~--~g~~HP-~~p~R~~~i~~ll~~~gL~~~~~i~~p-~~At~eeL~~~Hs~~Yv~~L~~~~~~~~ 92 (478)
+++.++|++....|. -...|+ +.++|++.+.+.+.+.++...+.+..+ +.|+.++++.+|+++|++++........
T Consensus 29 ~~~~l~~~~~~~~h~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~ke~~~~~~~t~~~~~ 108 (797)
T KOG1343|consen 29 IQKQLLFAEFQKQHENQQELLEKEEKLERLRQIEEELERHRLEQPLLILRNKREAKESAVASVHVKEKLQEFLLSKKMTA 108 (797)
T ss_pred hhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHHhhccCCccccccccchhhcccchhcccccHHHHHHHHhhhhhcc
Confidence 468889998887664 233344 788999999999999999888877776 8999999999999999998876542222
Q ss_pred HHHHHhhhhc-ccCCCCcCCcchHHHHHHhhhHHHHHHHHhhcCcc--cEEEeCCCCCCCcccCCCccceeechHHHHHH
Q 011761 93 QDQLRQLKRF-NVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLC--DIAINWAGGLHHAKKCEASGFCYVNDIVLAIL 169 (478)
Q Consensus 93 ~~~~~~~~~~-~~~~Dcp~f~gl~~~~~~~aGgsl~aa~~l~~g~~--~iAin~~gG~HHA~~~~asGFCy~NdiaiAi~ 169 (478)
++. +... .-.+.+++....+..+..++|+.+...+.+..|++ ..|+.+++| |||.++...|||+|||||++..
T Consensus 109 e~~---l~~~~~~~~~~~~~~~s~~~a~~a~~~~~~~~~~~~~~~~~n~~a~v~p~~-hhsep~~~~~~cl~n~Va~~~~ 184 (797)
T KOG1343|consen 109 EEG---LNHSSSRYPSLYYTSASHSSADQASGSLSGSYKAVLAGKASNGKADFRPPG-HHSEPNLKVGFCLFNNVAERRS 184 (797)
T ss_pred hhh---hhcccCCCCcceecCCchhhhcccCcccccccccccCCcccCccCcCCCCC-CccccchhcchhHHHHHHHHhh
Confidence 211 1111 11234566667788888999999987777666642 367888888 9999999999999999999998
Q ss_pred HHHhcC--CcEEEEeccccCCccccccccc--CCceEEeecCCC--CCCCCC--CCCCCcccCCCCCccEEecCCCC-CC
Q 011761 170 ELLKQH--ERVLYVDIDIHHGDGVEEAFYT--TDRVMTVSFHKF--GDYFPG--TGDIRDIGYSKGKFYSLNVPLDD-GI 240 (478)
Q Consensus 170 ~ll~~~--~RVl~IDiDvHHGDGtqeaF~~--d~~VltiSiH~~--~~ffPg--TG~~~eiG~g~G~~~~vNVPL~~-G~ 240 (478)
..+-.+ +||+++|||+|||+|||..|++ |++|+++|+|++ +.|||. .|....+|.|.|.++++|+|+.. |+
T Consensus 185 ~~~~~~~~rri~i~d~dvh~g~Gtq~~~~~~~d~~vl~~s~~r~e~~~f~P~~~~g~~~~~~~g~~~g~~~nl~~~~~g~ 264 (797)
T KOG1343|consen 185 SPLLRRKKRRILIVDWDVHHGPGTQPSSPNNGDQRVLYFSLHRLETGPFLPNITLGLATLRGGGPGLGQTGNLPWNQVGM 264 (797)
T ss_pred ccccccccceeEeecccccCCCCCCCccCCCcccccccccchhcccCCcCCCCccchHHHhCcCCCcceeeccchhhcCC
Confidence 655444 9999999999999999999999 999999999999 779998 58888999999999999999975 89
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCC-CCCcccCHHhHHHHHHHHHhcC-CCEEEEeCCCCCCcchhh
Q 011761 241 DDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDR-LGCFNLSIKGHAECVKFMRSFN-VPLLLLGGGGYTIRNVAR 318 (478)
Q Consensus 241 ~D~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDp-LG~~nLs~~g~~~~~~~l~~~~-~pll~lggGGY~~~~var 318 (478)
+|.+|..+|..++.|...+|+||+|+++||+|++.||+ +|.+..|+.+|...+...+-.+ +++.++++|||+....+.
T Consensus 265 ~~~dy~~~~~~~~~~~~~efqp~Lv~~sag~dA~lg~~~~~~m~~tP~~~~~~~~~~~~~~r~~l~v~~e~gy~le~l~~ 344 (797)
T KOG1343|consen 265 TDADYEAAFLHVLLPHASEFQPDLLLVSAGFDALLGDGPVGLMAQTPLGYAHRTSMHRPLGRGQLVVVLEGGYFLEKLAQ 344 (797)
T ss_pred cchhhhhhhhccCccchhhcCcceEEeeccccccccCcccCcccCCcccHHHHhccccccccCccceecchhHHHHHHHH
Confidence 99999999999999999999999999999999999997 6999999999999999866566 899999999999999998
Q ss_pred hHHHHHhhHhCCcCC
Q 011761 319 CWCYETGVALGVEVD 333 (478)
Q Consensus 319 ~w~~~t~~llg~~~~ 333 (478)
. ......++|.+.+
T Consensus 345 ~-~~~~~~llg~~~~ 358 (797)
T KOG1343|consen 345 S-QLVLNKLLGKPIE 358 (797)
T ss_pred h-hhhHHhhcCCCcc
Confidence 7 5556668887554
No 9
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=79.58 E-value=31 Score=38.75 Aligned_cols=142 Identities=20% Similarity=0.264 Sum_probs=87.1
Q ss_pred CCccceeec--hHHHHHHHHHhcCCcEEEEeccccCCcccccccccCCceEEeecCCCCCCCCCCCCCCcccCCCCCccE
Q 011761 154 EASGFCYVN--DIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYS 231 (478)
Q Consensus 154 ~asGFCy~N--diaiAi~~ll~~~~RVl~IDiDvHHGDGtqeaF~~d~~VltiSiH~~~~ffPgTG~~~eiG~g~G~~~~ 231 (478)
...++|-++ |-+=+|...+...=-| -||+|.|-=|++..+|-..|-=.-||.-. ||+|+....+- |-
T Consensus 312 ~~~~~~~~~~~dd~e~a~~I~~d~IdI-LvDl~g~T~d~r~~v~A~RpAPiqvswlG----y~aT~g~p~~D------Y~ 380 (620)
T COG3914 312 AVEKWYPIGRMDDAEIANAIRTDGIDI-LVDLDGHTVDTRCQVFAHRPAPIQVSWLG----YPATTGSPNMD------YF 380 (620)
T ss_pred hhhheeccCCcCHHHHHHHHHhcCCeE-EEeccCceeccchhhhhcCCCceEEeecc----cccccCCCcce------EE
Confidence 445788888 3333344443333234 58999999999999999988777777554 46765432221 22
Q ss_pred EecC--CCCCCChHHHHHHHHHHHHHHHHhc--------------------CCCEEEEecCCCCCCCCCCCCcccCHHhH
Q 011761 232 LNVP--LDDGIDDESYHYLFKPIIGKVMEVF--------------------RPGAVVLQCGADSLSGDRLGCFNLSIKGH 289 (478)
Q Consensus 232 vNVP--L~~G~~D~~y~~~f~~iv~pv~~~f--------------------~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~ 289 (478)
+-=| +|++. .+.|- +-|.++-.-| .++++|..|| -+.+..+++-+
T Consensus 381 I~D~y~vPp~a-e~yys----Ekl~RLp~cy~p~d~~~~v~p~~sR~~lglp~~avVf~c~--------~n~~K~~pev~ 447 (620)
T COG3914 381 ISDPYTVPPTA-EEYYS----EKLWRLPQCYQPVDGFEPVTPPPSRAQLGLPEDAVVFCCF--------NNYFKITPEVF 447 (620)
T ss_pred eeCceecCchH-HHHHH----HHHHhcccccCCCCCcccCCCCcchhhcCCCCCeEEEEec--------CCcccCCHHHH
Confidence 2111 12222 22333 3333332222 3478888887 25677888877
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCcchhhh
Q 011761 290 AECVKFMRSFNVPLLLLGGGGYTIRNVARC 319 (478)
Q Consensus 290 ~~~~~~l~~~~~pll~lggGGY~~~~var~ 319 (478)
..-.+.|+....-+++|.+||-+....++.
T Consensus 448 ~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l 477 (620)
T COG3914 448 ALWMQILSAVPNSVLLLKAGGDDAEINARL 477 (620)
T ss_pred HHHHHHHHhCCCcEEEEecCCCcHHHHHHH
Confidence 778888888877899999999666544443
No 10
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=75.13 E-value=8.7 Score=34.90 Aligned_cols=49 Identities=24% Similarity=0.430 Sum_probs=29.9
Q ss_pred HHHHhcCCCEEEEecCC-CCCCCCCCCCcccCHHhHHHHHHHHHhc--CCCEEEE
Q 011761 255 KVMEVFRPGAVVLQCGA-DSLSGDRLGCFNLSIKGHAECVKFMRSF--NVPLLLL 306 (478)
Q Consensus 255 pv~~~f~Pd~IVvqaG~-D~l~gDpLG~~nLs~~g~~~~~~~l~~~--~~pll~l 306 (478)
..+..++|++||++.|. |...+-+ ..-..+.+.++++.+++. +.+++++
T Consensus 44 ~~~~~~~p~~vvi~~G~ND~~~~~~---~~~~~~~~~~lv~~i~~~~~~~~iil~ 95 (171)
T cd04502 44 RLVLPYQPRRVVLYAGDNDLASGRT---PEEVLRDFRELVNRIRAKLPDTPIAII 95 (171)
T ss_pred hhhccCCCCEEEEEEecCcccCCCC---HHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 34456899999999998 5433221 222344456677777664 4555555
No 11
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=72.83 E-value=17 Score=33.53 Aligned_cols=74 Identities=18% Similarity=0.182 Sum_probs=41.2
Q ss_pred EecCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHH-Hh--cCCCEEEE
Q 011761 232 LNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFM-RS--FNVPLLLL 306 (478)
Q Consensus 232 vNVPL~~G~~D~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l-~~--~~~pll~l 306 (478)
+|.... |.+-..++..|...+......++||+|||..|..=.....-+....+.+.|.+.++.+ .. .+.+++++
T Consensus 41 ~N~gi~-G~t~~~~~~r~~~~~~~~~~~~~pd~V~i~~G~ND~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~vi~~ 117 (193)
T cd01835 41 YNLGVR-GDGSEDVAARWRAEWSRRGELNVPNRLVLSVGLNDTARGGRKRPQLSARAFLFGLNQLLEEAKRLVPVLVV 117 (193)
T ss_pred EeecCC-CCCHHHHHHHHHHHHHhhcccCCCCEEEEEecCcccccccCcccccCHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 455443 3334456666666555444458999999999986554321112235566666544433 22 24555554
No 12
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=71.08 E-value=11 Score=38.31 Aligned_cols=63 Identities=16% Similarity=0.331 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCc
Q 011761 244 SYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIR 314 (478)
Q Consensus 244 ~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~lggGGY~~~ 314 (478)
+|.++|+..+ |-+..|+-..+||-.|-.++..| ++ +.+..-+..+.+.+.+++++.|||....
T Consensus 1 ~~~~~~~~~~-~yi~~~~~~~~VIKlGG~ai~~~-----~l--~~~~~~ia~l~~~g~~~ViVHGggp~i~ 63 (280)
T cd04237 1 QFVDWFREAA-PYINAHRGKTFVIAFGGEAVAHP-----NF--DNIVHDIALLHSLGIRLVLVHGARPQID 63 (280)
T ss_pred ChHHHHHHHh-HHHHHhCCCEEEEEEChHHhcCc-----hH--HHHHHHHHHHHHCCCcEEEEeCCCHHHH
Confidence 4778888875 55789999999999998887654 22 3344445556667889999999988653
No 13
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=69.74 E-value=14 Score=33.65 Aligned_cols=52 Identities=23% Similarity=0.406 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhH----HHHHHHHHhc--CCCEEEEe
Q 011761 251 PIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGH----AECVKFMRSF--NVPLLLLG 307 (478)
Q Consensus 251 ~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~----~~~~~~l~~~--~~pll~lg 307 (478)
..+.+.+...+||+|||++|..=... ...+.+.| ..+++.+++. +.++++++
T Consensus 46 ~~~~~~l~~~~pd~Vii~~G~ND~~~-----~~~~~~~~~~~~~~li~~i~~~~~~~~iv~~~ 103 (189)
T cd01825 46 EFLQAQLAALPPDLVILSYGTNEAFN-----KQLNASEYRQQLREFIKRLRQILPNASILLVG 103 (189)
T ss_pred HHHHHHHhhCCCCEEEEECCCccccc-----CCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEc
Confidence 34445677899999999999654321 22344444 4566666663 55666653
No 14
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=68.38 E-value=44 Score=35.71 Aligned_cols=118 Identities=22% Similarity=0.295 Sum_probs=66.1
Q ss_pred HHHHHHHhcCCcEEEEeccccCCc----ccccccccCCceEEeecCCCCCCCCCCCCCCcc--cCCCCCccEEecCC-CC
Q 011761 166 LAILELLKQHERVLYVDIDIHHGD----GVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDI--GYSKGKFYSLNVPL-DD 238 (478)
Q Consensus 166 iAi~~ll~~~~RVl~IDiDvHHGD----GtqeaF~~d~~VltiSiH~~~~ffPgTG~~~ei--G~g~G~~~~vNVPL-~~ 238 (478)
+-+.|+.|..+|.+|||+|+-+|- |+-.++.-+. +-|+ |-+.-..-..|+.+ .+
T Consensus 122 ~L~nyavk~gr~Plfv~LDvgQ~sitiPGsiaA~~i~~-------------------~~D~~eGf~l~~pLV~~FG~~sp 182 (415)
T KOG2749|consen 122 ILLNYAVKQGRRPLFVELDVGQGSITIPGSIAAIPIEM-------------------PLDVIEGFSLTAPLVYNFGLTSP 182 (415)
T ss_pred HHHHHHHHcCCcceEEEcCCCCCceecccchhheeccc-------------------ccchhhCcccCCceeeeccCCCC
Confidence 344677888899999999996551 3333322110 0011 10011122344444 34
Q ss_pred CCChHHHHHHHHHHHHHHHHhc--CCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCC
Q 011761 239 GIDDESYHYLFKPIIGKVMEVF--RPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGG 309 (478)
Q Consensus 239 G~~D~~y~~~f~~iv~pv~~~f--~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~lggG 309 (478)
..+-+-|..++.++-.-+-+++ +|++=+=-|=. |-+ +|.. .+||+.++..++.|+.-+++++|-
T Consensus 183 ~~N~~LY~~~~s~La~v~~~~~~~n~~ar~sG~iI-----nT~-g~i~-~egy~~llhai~~f~v~vviVLg~ 248 (415)
T KOG2749|consen 183 STNLELYKALVSELAEVLKQRLSLNPEARVSGCII-----NTC-GWIE-GEGYAALLHAIKAFEVDVVIVLGQ 248 (415)
T ss_pred CcCHHHHHHHHHHHHHHHHHHhccCchhcccceEE-----ecc-ceec-cccHHHHHHHHHHcCccEEEEecc
Confidence 5566677777776655555555 34331111111 111 2444 789999999999999988888764
No 15
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=65.19 E-value=83 Score=29.58 Aligned_cols=16 Identities=19% Similarity=0.347 Sum_probs=13.0
Q ss_pred hcCCcEEEEeccccCC
Q 011761 173 KQHERVLYVDIDIHHG 188 (478)
Q Consensus 173 ~~~~RVl~IDiDvHHG 188 (478)
+..+||++||.|....
T Consensus 44 ~~G~rVllID~D~~~~ 59 (204)
T TIGR01007 44 QAGYKTLLIDGDMRNS 59 (204)
T ss_pred hCCCeEEEEeCCCCCh
Confidence 4568999999998754
No 16
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=63.87 E-value=6.8 Score=35.94 Aligned_cols=42 Identities=26% Similarity=0.404 Sum_probs=29.8
Q ss_pred ccCCCccceee----chHHH-HHHHHHhcC--CcEEEEeccccCCcccc
Q 011761 151 KKCEASGFCYV----NDIVL-AILELLKQH--ERVLYVDIDIHHGDGVE 192 (478)
Q Consensus 151 ~~~~asGFCy~----Ndiai-Ai~~ll~~~--~RVl~IDiDvHHGDGtq 192 (478)
.+-.++|||+| ++-|. |++++-... +|++-||||.-.=+|-|
T Consensus 73 ~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~GF~eGRQ 121 (153)
T KOG0121|consen 73 FKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAGFVEGRQ 121 (153)
T ss_pred CCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccccchhhhh
Confidence 45678999987 45554 555654332 89999999987766766
No 17
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=63.43 E-value=35 Score=30.65 Aligned_cols=47 Identities=17% Similarity=0.372 Sum_probs=30.3
Q ss_pred HHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhH----HHHHHHHHhcCCCEEEEe
Q 011761 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGH----AECVKFMRSFNVPLLLLG 307 (478)
Q Consensus 255 pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~----~~~~~~l~~~~~pll~lg 307 (478)
..+..++||+|||+.|..=.. . ..+.+.| .++++.+++.+.+++++.
T Consensus 58 ~~~~~~~pd~v~i~~G~ND~~----~--~~~~~~~~~~l~~li~~~~~~~~~vil~~ 108 (177)
T cd01822 58 ALLAQHKPDLVILELGGNDGL----R--GIPPDQTRANLRQMIETAQARGAPVLLVG 108 (177)
T ss_pred HHHHhcCCCEEEEeccCcccc----c--CCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 344568999999999975322 1 2334444 456677777777777663
No 18
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=63.29 E-value=60 Score=29.77 Aligned_cols=14 Identities=21% Similarity=0.439 Sum_probs=12.7
Q ss_pred CcEEEEeccccCCc
Q 011761 176 ERVLYVDIDIHHGD 189 (478)
Q Consensus 176 ~RVl~IDiDvHHGD 189 (478)
+||++||.|.+.++
T Consensus 25 ~~vlliD~D~~~~~ 38 (179)
T cd03110 25 KNVVLADCDVDAPN 38 (179)
T ss_pred hCcEEEECCCCCCc
Confidence 79999999999876
No 19
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=61.49 E-value=20 Score=34.54 Aligned_cols=19 Identities=37% Similarity=0.485 Sum_probs=15.4
Q ss_pred HHhcCCcEEEEeccccCCc
Q 011761 171 LLKQHERVLYVDIDIHHGD 189 (478)
Q Consensus 171 ll~~~~RVl~IDiDvHHGD 189 (478)
|.+...||++||+|.++||
T Consensus 25 la~~g~~VlliD~D~~~~~ 43 (251)
T TIGR01969 25 LAKLGKKVLALDADITMAN 43 (251)
T ss_pred HHHCCCeEEEEeCCCCCcc
Confidence 3355689999999998877
No 20
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=61.33 E-value=31 Score=31.44 Aligned_cols=62 Identities=13% Similarity=0.239 Sum_probs=33.8
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHH----HHHHHHHhcCCCEEEE
Q 011761 239 GIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHA----ECVKFMRSFNVPLLLL 306 (478)
Q Consensus 239 G~~D~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~----~~~~~l~~~~~pll~l 306 (478)
|++......++...+..++ .++||+|||..|..=... -..+.+.+. .+++.++..+.+++++
T Consensus 46 g~~G~~~~~~~~~~~~~~~-~~~~d~vii~~G~ND~~~-----~~~~~~~~~~~~~~~i~~i~~~~~~vil~ 111 (185)
T cd01832 46 AVRGRRTAQILAEQLPAAL-ALRPDLVTLLAGGNDILR-----PGTDPDTYRADLEEAVRRLRAAGARVVVF 111 (185)
T ss_pred cCCcchHHHHHHHHHHHHH-hcCCCEEEEecccccccc-----CCCCHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 3333333333344444443 479999999999743221 134555444 4555556556666655
No 21
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=61.20 E-value=38 Score=32.27 Aligned_cols=24 Identities=0% Similarity=0.213 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecC
Q 011761 247 YLFKPIIGKVMEVFRPGAVVLQCG 270 (478)
Q Consensus 247 ~~f~~iv~pv~~~f~Pd~IVvqaG 270 (478)
..++.++..+.++|++|+|||-++
T Consensus 134 ~~l~~~l~~l~~~y~~D~IiiD~p 157 (207)
T TIGR03018 134 QRMRSLLHELARRYPDRIIIIDTP 157 (207)
T ss_pred HHHHHHHHHHHhhCCCCEEEEECC
Confidence 346677777778888899999887
No 22
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=60.39 E-value=25 Score=32.33 Aligned_cols=67 Identities=15% Similarity=0.114 Sum_probs=38.2
Q ss_pred EecCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHh--cCCCEEEE
Q 011761 232 LNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRS--FNVPLLLL 306 (478)
Q Consensus 232 vNVPL~~G~~D~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~--~~~pll~l 306 (478)
.|+... |..-.+++..++. +..++||+|+|..|..=+... ....-..+.+.++++.+++ .+.+++++
T Consensus 44 ~n~g~~-G~t~~~~~~~l~~-----~~~~~pd~Vii~~G~ND~~~~--~~~~~~~~~l~~li~~i~~~~~~~~iiv~ 112 (191)
T cd01836 44 RLFAKT-GATSADLLRQLAP-----LPETRFDVAVISIGVNDVTHL--TSIARWRKQLAELVDALRAKFPGARVVVT 112 (191)
T ss_pred EEEecC-CcCHHHHHHHHHh-----cccCCCCEEEEEecccCcCCC--CCHHHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 455442 3344556655544 457899999999998433211 1112223445567777776 46666665
No 23
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=58.73 E-value=21 Score=30.46 Aligned_cols=46 Identities=13% Similarity=0.230 Sum_probs=29.3
Q ss_pred HHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCC
Q 011761 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGY 311 (478)
Q Consensus 255 pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~lggGGY 311 (478)
..+.+++||+|.+++- +.-+.....++++.+++.+-.+.++.||.+
T Consensus 45 ~~~~~~~pd~V~iS~~-----------~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~ 90 (121)
T PF02310_consen 45 EALRAERPDVVGISVS-----------MTPNLPEAKRLARAIKERNPNIPIVVGGPH 90 (121)
T ss_dssp HHHHHTTCSEEEEEES-----------SSTHHHHHHHHHHHHHTTCTTSEEEEEESS
T ss_pred HHHhcCCCcEEEEEcc-----------CcCcHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 4577889999999874 222334456677777776544445555544
No 24
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=58.24 E-value=41 Score=32.20 Aligned_cols=59 Identities=24% Similarity=0.385 Sum_probs=46.3
Q ss_pred cEEecCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEe
Q 011761 230 YSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLG 307 (478)
Q Consensus 230 ~~vNVPL~~G~~D~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~lg 307 (478)
|.||+ +.+.++.-+.+..+++. -|+||| |..|-+.|..+.|.+.++.+...+.|+++++
T Consensus 79 Y~V~v--------~~le~i~~~al~rA~~~--aDvIII---------DEIGpMElks~~f~~~ve~vl~~~kpliatl 137 (179)
T COG1618 79 YGVNV--------EGLEEIAIPALRRALEE--ADVIII---------DEIGPMELKSKKFREAVEEVLKSGKPLIATL 137 (179)
T ss_pred EEeeH--------HHHHHHhHHHHHHHhhc--CCEEEE---------ecccchhhccHHHHHHHHHHhcCCCcEEEEE
Confidence 67887 45555666666665544 577775 8999999999999999999999999988775
No 25
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=57.88 E-value=42 Score=30.58 Aligned_cols=68 Identities=13% Similarity=0.220 Sum_probs=36.7
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCC-CCCCcccCHHhHHHHHHHHHhcCCCEEEE
Q 011761 231 SLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGD-RLGCFNLSIKGHAECVKFMRSFNVPLLLL 306 (478)
Q Consensus 231 ~vNVPL~~G~~D~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gD-pLG~~nLs~~g~~~~~~~l~~~~~pll~l 306 (478)
.+|..+. |.+-.+++..++. .+...+||+||++.|..=.... ++.. -.+.+.++++.+++.+.+++++
T Consensus 34 v~n~g~~-G~~~~~~l~~l~~----~~~~~~~d~v~i~~G~ND~~~~~~~~~---~~~~~~~li~~~~~~~~~~il~ 102 (183)
T cd04501 34 VINRGIN-GDTTSQMLVRFYE----DVIALKPAVVIIMGGTNDIIVNTSLEM---IKDNIRSMVELAEANGIKVILA 102 (183)
T ss_pred EEecCcC-CccHHHHHHHHHH----HHHhcCCCEEEEEeccCccccCCCHHH---HHHHHHHHHHHHHHCCCcEEEE
Confidence 4554333 2223345544433 3345799999999998643321 1111 1233445666777767666655
No 26
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=57.32 E-value=37 Score=30.61 Aligned_cols=42 Identities=17% Similarity=0.290 Sum_probs=26.6
Q ss_pred hcCCCEEEEecCCCCCCCCCCCCcccCHH----hHHHHHHHHHh--cCCCEEEE
Q 011761 259 VFRPGAVVLQCGADSLSGDRLGCFNLSIK----GHAECVKFMRS--FNVPLLLL 306 (478)
Q Consensus 259 ~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~----g~~~~~~~l~~--~~~pll~l 306 (478)
.++||+||++.|..=.. .. .+.+ .+.++++.+++ .+.+++++
T Consensus 46 ~~~pd~vvl~~G~ND~~----~~--~~~~~~~~~l~~li~~~~~~~~~~~vi~~ 93 (169)
T cd01828 46 ALQPKAIFIMIGINDLA----QG--TSDEDIVANYRTILEKLRKHFPNIKIVVQ 93 (169)
T ss_pred ccCCCEEEEEeeccCCC----CC--CCHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 68999999999964332 12 3343 44456666666 46666665
No 27
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=55.14 E-value=41 Score=30.40 Aligned_cols=69 Identities=19% Similarity=0.166 Sum_probs=38.5
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhc--CCCEEEE
Q 011761 231 SLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF--NVPLLLL 306 (478)
Q Consensus 231 ~vNVPL~~G~~D~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~--~~pll~l 306 (478)
.+|....... -..++..+ .+.+..++||+|||+.|..=+.... ...-..+.+.++++.+++. +.+++++
T Consensus 26 v~n~g~~G~t-~~~~~~~~----~~~~~~~~pd~v~i~~G~ND~~~~~--~~~~~~~~~~~l~~~~~~~~p~~~vi~~ 96 (174)
T cd01841 26 VNNLGIAGIS-SRQYLEHI----EPQLIQKNPSKVFLFLGTNDIGKEV--SSNQFIKWYRDIIEQIREEFPNTKIYLL 96 (174)
T ss_pred EEeccccccc-HHHHHHHH----HHHHHhcCCCEEEEEeccccCCCCC--CHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 4666665433 33444333 3344568999999999986543321 1222234455677777653 4555554
No 28
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=55.03 E-value=29 Score=32.69 Aligned_cols=50 Identities=6% Similarity=0.121 Sum_probs=28.7
Q ss_pred HHhcCCCEEEEecCCCCCCCCCCC--CcccCHH----hHHHHHHHHHhcCCCEEEE
Q 011761 257 MEVFRPGAVVLQCGADSLSGDRLG--CFNLSIK----GHAECVKFMRSFNVPLLLL 306 (478)
Q Consensus 257 ~~~f~Pd~IVvqaG~D~l~gDpLG--~~nLs~~----g~~~~~~~l~~~~~pll~l 306 (478)
+..-+|++|+|.+|..=+.....+ .-.++++ .+.++++.+++.+.+++++
T Consensus 70 ~~~~~p~~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~vil~ 125 (204)
T cd01830 70 LSQPGVRTVIILEGVNDIGASGTDFAAAPVTAEELIAGYRQLIRRAHARGIKVIGA 125 (204)
T ss_pred hcCCCCCEEEEecccccccccccccccCCCCHHHHHHHHHHHHHHHHHCCCeEEEe
Confidence 344579999999998644321110 0122333 4555677777777666543
No 29
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=53.50 E-value=42 Score=31.01 Aligned_cols=53 Identities=21% Similarity=0.302 Sum_probs=29.7
Q ss_pred HHHHHhcCCCEEEEecCCCCCCCCCCCC--ccc--C--HHhH----HHHHHHHHhcCCCEEEE
Q 011761 254 GKVMEVFRPGAVVLQCGADSLSGDRLGC--FNL--S--IKGH----AECVKFMRSFNVPLLLL 306 (478)
Q Consensus 254 ~pv~~~f~Pd~IVvqaG~D~l~gDpLG~--~nL--s--~~g~----~~~~~~l~~~~~pll~l 306 (478)
...+.+.+||+||+..|..=+.....+. ... . .+.| ..+++.++..+.+++++
T Consensus 52 ~~~l~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~~~~~~~vili 114 (200)
T cd01829 52 KELIAEEKPDVVVVFLGANDRQDIRDGDGYLKFGSPEWEEEYRQRIDELLNVARAKGVPVIWV 114 (200)
T ss_pred HHHHhcCCCCEEEEEecCCCCccccCCCceeecCChhHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 3445678999999999985443211110 000 0 1233 34555556567777766
No 30
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=53.46 E-value=31 Score=35.32 Aligned_cols=58 Identities=24% Similarity=0.383 Sum_probs=37.4
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccC----HHhHHHHHHHHHhc--CCCEEEEeCC
Q 011761 251 PIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLS----IKGHAECVKFMRSF--NVPLLLLGGG 309 (478)
Q Consensus 251 ~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs----~~g~~~~~~~l~~~--~~pll~lggG 309 (478)
..|.+++++++||++|+ .|-|++..+.-.-.+|. .+-|-++|+.++.+ +.--|++..|
T Consensus 143 ~~i~~Ll~~~~PDIlVi-TGHD~~~K~~~d~~dl~~YrnSkyFVeaVk~aR~y~~~~D~LVIFAG 206 (283)
T TIGR02855 143 EKVLDLIEEVRPDILVI-TGHDAYSKNKGNYMDLNAYRHSKYFVETVREARKYVPSLDQLVIFAG 206 (283)
T ss_pred HHHHHHHHHhCCCEEEE-eCchhhhcCCCChhhhhhhhhhHHHHHHHHHHHhcCCCcccEEEEcc
Confidence 34667899999998765 79999976543323332 23344567777765 4445666666
No 31
>PRK05279 N-acetylglutamate synthase; Validated
Probab=53.45 E-value=33 Score=36.84 Aligned_cols=65 Identities=15% Similarity=0.320 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCcc
Q 011761 243 ESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRN 315 (478)
Q Consensus 243 ~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~lggGGY~~~~ 315 (478)
..|...|+..+ |-+.+|+=..+||-.|-.++..+ ++ +....-+..+...+.+++++.|||+....
T Consensus 7 ~~~~~~~~~~~-~~i~~~~~~~~VIk~GG~~l~~~-----~~--~~~~~~i~~l~~~g~~~VlVHGgg~~i~~ 71 (441)
T PRK05279 7 TEFVDWFRHSA-PYINAHRGKTFVIMLGGEAIAHG-----NF--SNIVHDIALLHSLGIRLVLVHGARPQIEE 71 (441)
T ss_pred hHHHHHHHHHh-HHHHHhCCCEEEEEECchhccCh-----hH--HHHHHHHHHHHHCCCeEEEECCCCHHHHH
Confidence 35888888876 55788888899999998887543 12 33445556667778899999999987643
No 32
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=53.35 E-value=19 Score=38.55 Aligned_cols=61 Identities=20% Similarity=0.340 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCC
Q 011761 245 YHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTI 313 (478)
Q Consensus 245 y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~lggGGY~~ 313 (478)
|...|++.+ |-++.|+=..+||-+|-.++..+. + ..+..-+.+++..+.++++|.|||+..
T Consensus 1 ~~~~~~~~~-~~i~~~~~~~~ViK~GG~~~~~~~-----~--~~~~~~i~~l~~~g~~~vlVHGgg~~i 61 (429)
T TIGR01890 1 FVAWFREAA-PYINAHRGKTFVVGLGGELVEGGN-----L--GNIVADIALLHSLGVRLVLVHGARPQI 61 (429)
T ss_pred ChhHHhhhh-HHHHHhCCCEEEEEEChhhccCcc-----H--HHHHHHHHHHHHCCCcEEEEcCCCHHH
Confidence 456676664 667889999999999977765421 1 235556667777888999999999654
No 33
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=51.31 E-value=46 Score=29.07 Aligned_cols=49 Identities=18% Similarity=0.272 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCC
Q 011761 251 PIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGY 311 (478)
Q Consensus 251 ~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~lggGGY 311 (478)
..+..+.+.++||+|.++|= ..+.....++++.+|+.+..+.++.||.+
T Consensus 29 ~~~~~~~~~~~pdiv~~S~~------------~~~~~~~~~~~~~ik~~~p~~~iv~GG~~ 77 (127)
T cd02068 29 DIVEDIKELLKPDVVGISLM------------TSAIYEALELAKIAKEVLPNVIVVVGGPH 77 (127)
T ss_pred HHHHHHHHhcCCCEEEEeec------------cccHHHHHHHHHHHHHHCCCCEEEECCcc
Confidence 44445444499999999841 12223456678888887655666666655
No 34
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=50.94 E-value=62 Score=30.30 Aligned_cols=59 Identities=19% Similarity=0.298 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhc---CCCEEEEeC
Q 011761 242 DESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF---NVPLLLLGG 308 (478)
Q Consensus 242 D~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~---~~pll~lgg 308 (478)
.++...+|+.++.. +.+.+||+||+ +| |.... ...+..-+..+.+.++++ ++|+.++.|
T Consensus 23 ~~~~~~~~~~~~~~-~~~~~~d~i~~-~G-D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G 84 (223)
T cd00840 23 REDQFEAFEEIVEL-AIEEKVDFVLI-AG-DLFDS-----NNPSPEALELLIEALRRLKEAGIPVFIIAG 84 (223)
T ss_pred hHHHHHHHHHHHHH-HHhcCCCEEEE-CC-cccCC-----CCCCHHHHHHHHHHHHHHHHCCCCEEEecC
Confidence 35677888888764 56779998665 33 44332 233444445556666554 889888765
No 35
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=50.61 E-value=23 Score=33.67 Aligned_cols=48 Identities=25% Similarity=0.335 Sum_probs=27.8
Q ss_pred HHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhc--CCCEEEE
Q 011761 257 MEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF--NVPLLLL 306 (478)
Q Consensus 257 ~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~--~~pll~l 306 (478)
+..++|++|||.+|..=..... ...-..+.+.++++.+++. +.+++++
T Consensus 85 l~~~~pd~VvI~~G~ND~~~~~--~~~~~~~~l~~ii~~l~~~~P~~~Iil~ 134 (214)
T cd01820 85 LDGVNPKVVVLLIGTNNIGHTT--TAEEIAEGILAIVEEIREKLPNAKILLL 134 (214)
T ss_pred ccCCCCCEEEEEecccccCCCC--CHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 4468999999999987543210 1111223445566666654 4555555
No 36
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=49.88 E-value=84 Score=33.24 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=22.2
Q ss_pred chHHHHHHHHH---HHcCCCCCceEeCCCCCCHHHHhccChHHHHHHHH
Q 011761 40 PHRIRMTHALL---AHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLR 85 (478)
Q Consensus 40 p~R~~~i~~ll---~~~gL~~~~~i~~p~~At~eeL~~~Hs~~Yv~~L~ 85 (478)
.+=++...+++ .++||.--.++..|. +++|+..|.
T Consensus 115 ~~GL~~~R~ll~~i~~~GlPvatE~ld~~-----------~~~y~~Dli 152 (344)
T TIGR00034 115 NHGLRIARKLLLDLVNLGLPIAGEFLDMI-----------SPQYLADLF 152 (344)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEecCcC-----------cHHHHHHHH
Confidence 44456666665 788886555666554 477876665
No 37
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=49.24 E-value=40 Score=30.71 Aligned_cols=52 Identities=15% Similarity=0.190 Sum_probs=29.9
Q ss_pred HHHHHhc---CCCEEEEecCCCCCCCCCCCCcccCHHhH----HHHHHHHHh--cCCCEEEE
Q 011761 254 GKVMEVF---RPGAVVLQCGADSLSGDRLGCFNLSIKGH----AECVKFMRS--FNVPLLLL 306 (478)
Q Consensus 254 ~pv~~~f---~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~----~~~~~~l~~--~~~pll~l 306 (478)
...+..+ +||+|||+.|..=..... +.-..+.+-| ..+++.+++ .+.+++++
T Consensus 53 ~~~~~~~~~~~pd~vii~~G~ND~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ii~~ 113 (199)
T cd01838 53 PKIFLEEKLAQPDLVTIFFGANDAALPG-QPQHVPLDEYKENLRKIVSHLKSLSPKTKVILI 113 (199)
T ss_pred HHhcCccccCCceEEEEEecCccccCCC-CCCcccHHHHHHHHHHHHHHHHhhCCCCeEEEe
Confidence 3344445 899999999986443321 0012444444 446666666 45666666
No 38
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=46.98 E-value=46 Score=34.27 Aligned_cols=58 Identities=28% Similarity=0.402 Sum_probs=36.7
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccC----HHhHHHHHHHHHhc--CCCEEEEeCC
Q 011761 251 PIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLS----IKGHAECVKFMRSF--NVPLLLLGGG 309 (478)
Q Consensus 251 ~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs----~~g~~~~~~~l~~~--~~pll~lggG 309 (478)
..|..++++++||++|+ .|-|++..+.-.-.+|. .+-|-++|+.++.+ +.--|++..|
T Consensus 144 ~~i~~Ll~~~~PDIlVi-TGHD~~~K~~~d~~dl~~YrnSkyFVeaV~~aR~~ep~~D~LVIfAG 207 (287)
T PF05582_consen 144 EKIYRLLEEYRPDILVI-TGHDGYLKNKKDYSDLNNYRNSKYFVEAVKEARKYEPNLDDLVIFAG 207 (287)
T ss_pred HHHHHHHHHcCCCEEEE-eCchhhhcCCCChhhhhhhhccHHHHHHHHHHHhcCCCcccEEEEcc
Confidence 45667889999998765 79999877652222221 22234566666665 4445666666
No 39
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=46.81 E-value=15 Score=32.18 Aligned_cols=71 Identities=14% Similarity=0.268 Sum_probs=35.5
Q ss_pred EecCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHH----HHHHHHHhcCCCEEEEe
Q 011761 232 LNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHA----ECVKFMRSFNVPLLLLG 307 (478)
Q Consensus 232 vNVPL~~G~~D~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~----~~~~~l~~~~~pll~lg 307 (478)
.|.... |.+-..++..+..-+.+ +...+||+|||++|..=.... .....+.+.+. ++++.++..+ +++++.
T Consensus 34 ~n~~~~-G~~~~~~~~~~~~~~~~-~~~~~~d~vvi~~G~ND~~~~--~~~~~~~~~~~~~l~~~i~~~~~~~-~vi~~~ 108 (179)
T PF13472_consen 34 YNLGVS-GATSSDFLARLQRDVLR-FKDPKPDLVVISFGTNDVLNG--DENDTSPEQYEQNLRRIIEQLRPHG-PVILVS 108 (179)
T ss_dssp EEEE-T-T-BHHHHHHHHHHHCHH-HCGTTCSEEEEE--HHHHCTC--TTCHHHHHHHHHHHHHHHHHHHTTS-EEEEEE
T ss_pred EEEeec-CccHhHHHHHHHHHHhh-hccCCCCEEEEEccccccccc--ccccccHHHHHHHHHHHHHhhcccC-cEEEec
Confidence 444443 33344455556555544 589999999999996333221 12233334333 3444444444 666664
No 40
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=45.47 E-value=76 Score=33.35 Aligned_cols=66 Identities=17% Similarity=0.290 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhc---CCCEEEEeCCCCCCcchhh
Q 011761 242 DESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF---NVPLLLLGGGGYTIRNVAR 318 (478)
Q Consensus 242 D~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~---~~pll~lggGGY~~~~var 318 (478)
-+++..+|..++. ++.+-++|+||++ ||=.-..+.|.+.-....++++.+ ++|++++-| |....++
T Consensus 22 ~~d~~~~f~~~l~-~a~~~~vD~vliA-------GDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I~G---NHD~~~~ 90 (390)
T COG0420 22 LEDQKKAFDELLE-IAKEEKVDFVLIA-------GDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVIAG---NHDSPSR 90 (390)
T ss_pred hHHHHHHHHHHHH-HHHHccCCEEEEc-------cccccCCCCCHHHHHHHHHHHHHhccCCCcEEEecC---CCCchhc
Confidence 4678888888876 5778889999863 676667778888777777777665 699998854 4444443
No 41
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=45.31 E-value=46 Score=30.46 Aligned_cols=49 Identities=16% Similarity=0.412 Sum_probs=30.9
Q ss_pred HHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhc--CCCEEEE
Q 011761 253 IGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF--NVPLLLL 306 (478)
Q Consensus 253 v~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~--~~pll~l 306 (478)
+..++..++|++||+..|..=...+ .-..+.+..+++.+++. +.|++++
T Consensus 49 ~~~~~~~~~pd~vii~~G~ND~~~~-----~~~~~~~~~~i~~i~~~~p~~~iil~ 99 (177)
T cd01844 49 VAELLRDVPADLYIIDCGPNIVGAE-----AMVRERLGPLVKGLRETHPDTPILLV 99 (177)
T ss_pred HHHHHHhcCCCEEEEEeccCCCccH-----HHHHHHHHHHHHHHHHHCcCCCEEEE
Confidence 3345567899999999998743221 11234556677777764 4566655
No 42
>KOG3147 consensus 6-phosphogluconolactonase - like protein [Carbohydrate transport and metabolism]
Probab=43.59 E-value=78 Score=32.03 Aligned_cols=85 Identities=14% Similarity=0.187 Sum_probs=46.0
Q ss_pred ccccccccCCceEEeecCCCCCCCCC-CCCCCcccCCCCCccEEecCCCCCCChHHHHHHHHHHHHHHHHh---cCCCEE
Q 011761 190 GVEEAFYTTDRVMTVSFHKFGDYFPG-TGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEV---FRPGAV 265 (478)
Q Consensus 190 GtqeaF~~d~~VltiSiH~~~~ffPg-TG~~~eiG~g~G~~~~vNVPL~~G~~D~~y~~~f~~iv~pv~~~---f~Pd~I 265 (478)
+--.+|+-|.|+.-++ |-..+|=+. .+.++.+-.-..+-|.+|--|.. +.++=...++..+..++.. =+.|++
T Consensus 70 ~kW~if~~DER~Vp~~-~~dSNyg~~~~~~l~~v~~~~~~i~~id~~L~~--~~~~~a~~ye~~l~~~v~~~s~p~FDL~ 146 (252)
T KOG3147|consen 70 SKWHIFFVDERVVPLD-DPDSNYGLAKRHFLSKVPIPHYNIYPIDESLIA--DAEEAADLYEKELKALVANDSFPVFDLL 146 (252)
T ss_pred cceEEEEEeccccCCC-CCcccHHHHHHhhhhhCCCCcCcEEECChhhcc--CHHHHHHHHHHHHHHHhccCCCcceeEE
Confidence 5556888888887766 333221110 12222222222245677777765 2233333344444444433 235999
Q ss_pred EEecCCCCCCCC
Q 011761 266 VLQCGADSLSGD 277 (478)
Q Consensus 266 VvqaG~D~l~gD 277 (478)
++-||.|+|.--
T Consensus 147 LLG~GpDGHtaS 158 (252)
T KOG3147|consen 147 LLGMGPDGHTAS 158 (252)
T ss_pred EeccCCCCCeee
Confidence 999999999653
No 43
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=43.12 E-value=1.9e+02 Score=29.05 Aligned_cols=88 Identities=11% Similarity=0.199 Sum_probs=50.2
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHh-cCCCEEE--Ee
Q 011761 231 SLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRS-FNVPLLL--LG 307 (478)
Q Consensus 231 ~vNVPL~~G~~D~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~-~~~pll~--lg 307 (478)
-|++--....+-+++..+.+ .+.+.-.++++++.||+-++..-+.-..|| ..+..|++ ++.||++ -.
T Consensus 134 PVilk~G~~~t~~e~~~Ave----~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl------~~i~~lk~~~~~pV~~ds~H 203 (260)
T TIGR01361 134 PVLLKRGMGNTIEEWLYAAE----YILSSGNGNVILCERGIRTFEKATRNTLDL------SAVPVLKKETHLPIIVDPSH 203 (260)
T ss_pred cEEEeCCCCCCHHHHHHHHH----HHHHcCCCcEEEEECCCCCCCCCCcCCcCH------HHHHHHHHhhCCCEEEcCCC
Confidence 34443222233556666654 444556789999999986663222223444 25566665 6999887 45
Q ss_pred CCCCCCcchhhhHHHHHhhHhCCc
Q 011761 308 GGGYTIRNVARCWCYETGVALGVE 331 (478)
Q Consensus 308 gGGY~~~~var~w~~~t~~llg~~ 331 (478)
.+|+.....+-|. +++.+|..
T Consensus 204 s~G~r~~~~~~~~---aAva~Ga~ 224 (260)
T TIGR01361 204 AAGRRDLVIPLAK---AAIAAGAD 224 (260)
T ss_pred CCCccchHHHHHH---HHHHcCCC
Confidence 6776543333333 45667754
No 44
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=42.73 E-value=44 Score=36.83 Aligned_cols=58 Identities=16% Similarity=0.222 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCC-CCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCcc
Q 011761 248 LFKPIIGKVMEVFRPGAVVLQCGA-DSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRN 315 (478)
Q Consensus 248 ~f~~iv~pv~~~f~Pd~IVvqaG~-D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~lggGGY~~~~ 315 (478)
-++..|..+.++|+|++|+|...+ -.+.||.++. +++.+..-++|++.+--.||....
T Consensus 72 ~L~~aI~~~~~~~~P~~I~V~sTC~selIGdDi~~----------~~~~~~~~~~pvi~v~t~gf~g~~ 130 (511)
T TIGR01278 72 RLVDTVRRVDDRFKPDLIVVTPSCTSSLLQEDLGN----------LAAAAGLDKSKVIVADVNAYRRKE 130 (511)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCChHHHhccCHHH----------HHHHhccCCCcEEEecCCCcccch
Confidence 455667778889999998888776 6777775443 334333237899999888888754
No 45
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=42.63 E-value=75 Score=28.11 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=25.3
Q ss_pred HHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhc
Q 011761 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF 299 (478)
Q Consensus 255 pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~ 299 (478)
..+..++||+||++.|..=+..- -...-..+.+.++++.+++.
T Consensus 34 ~~~~~~~pd~vvi~~G~ND~~~~--~~~~~~~~~~~~~i~~i~~~ 76 (157)
T cd01833 34 DWVLAAKPDVVLLHLGTNDLVLN--RDPDTAPDRLRALIDQMRAA 76 (157)
T ss_pred hccccCCCCEEEEeccCcccccC--CCHHHHHHHHHHHHHHHHHh
Confidence 34556899999999998643221 01111233445566777665
No 46
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=42.11 E-value=1.3e+02 Score=25.66 Aligned_cols=67 Identities=13% Similarity=0.243 Sum_probs=33.4
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCC--CEEEEeC
Q 011761 231 SLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNV--PLLLLGG 308 (478)
Q Consensus 231 ~vNVPL~~G~~D~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~--pll~lgg 308 (478)
++|+|+.. +..-+..++.. +...+...||+-|+..... +......+.+.++..+. .-+.++.
T Consensus 42 Ai~ip~~~------~~~~~~~~~~~-~~~~~~~~iv~~C~~~g~r---------s~~a~~~l~~~l~~~G~~~~~v~~l~ 105 (113)
T cd01443 42 SINLPAQS------CYQTLPQVYAL-FSLAGVKLAIFYCGSSQGR---------GPRAARWFADYLRKVGESLPKSYILT 105 (113)
T ss_pred ceecchhH------HHHHHHHHHHH-hhhcCCCEEEEECCCCCcc---------cHHHHHHHHHHHhccCCCCCeEEEEC
Confidence 68999853 21222223322 2234567788888732221 22222234444444442 3466678
Q ss_pred CCCCC
Q 011761 309 GGYTI 313 (478)
Q Consensus 309 GGY~~ 313 (478)
|||+.
T Consensus 106 GG~~~ 110 (113)
T cd01443 106 GGIKA 110 (113)
T ss_pred Chhhh
Confidence 99863
No 47
>PRK04531 acetylglutamate kinase; Provisional
Probab=41.60 E-value=37 Score=36.47 Aligned_cols=52 Identities=15% Similarity=0.385 Sum_probs=39.8
Q ss_pred HHHHhcCC----CEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCc
Q 011761 255 KVMEVFRP----GAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIR 314 (478)
Q Consensus 255 pv~~~f~P----d~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~lggGGY~~~ 314 (478)
+-++.|+- ..+||-.|-..+.. + .+.+...+.+|.+.+.++++|.|||....
T Consensus 25 ~~l~~F~~~~~~~~~VIKiGG~~l~~-~-------~~~l~~dla~L~~~G~~~VlVHGggpqI~ 80 (398)
T PRK04531 25 QYLKRFSQLDAERFAVIKVGGAVLRD-D-------LEALASSLSFLQEVGLTPIVVHGAGPQLD 80 (398)
T ss_pred HHHHHHhCcCCCcEEEEEEChHHhhc-C-------HHHHHHHHHHHHHCCCcEEEEECCCHHHH
Confidence 33455554 78999999777763 2 36677888899999999999999998764
No 48
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=41.26 E-value=86 Score=26.82 Aligned_cols=55 Identities=13% Similarity=0.154 Sum_probs=32.7
Q ss_pred HHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHh--cCCCEEEEeC
Q 011761 254 GKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRS--FNVPLLLLGG 308 (478)
Q Consensus 254 ~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~--~~~pll~lgg 308 (478)
...+..+.||+||++.|..=....+........+.+.++++.++. .+.+++++.-
T Consensus 58 ~~~~~~~~~d~vil~~G~ND~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vv~~~~ 114 (187)
T cd00229 58 RLALLKDKPDLVIIELGTNDLGRGGDTSIDEFKANLEELLDALRERAPGAKVILITP 114 (187)
T ss_pred hhhhccCCCCEEEEEecccccccccccCHHHHHHHHHHHHHHHHHHCCCCcEEEEeC
Confidence 455678999999999996533322101223334445566777764 4566666643
No 49
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=39.44 E-value=1.4e+02 Score=31.65 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=22.1
Q ss_pred eechHHHHHHHHHhcC--CcEEEEeccccCCcccccc
Q 011761 160 YVNDIVLAILELLKQH--ERVLYVDIDIHHGDGVEEA 194 (478)
Q Consensus 160 y~NdiaiAi~~ll~~~--~RVl~IDiDvHHGDGtqea 194 (478)
.-+++..++..+.+.. .+|+ +|.=|||+-.+.
T Consensus 244 ~~~~i~~a~~~l~k~~l~~~vm---VD~SH~Ns~K~~ 277 (353)
T PRK12755 244 DAASVAACEAQLEKAGLRPRLM---IDCSHANSGKDY 277 (353)
T ss_pred CHHHHHHHHHHHHHcCCCCcEE---ecCCccccccch
Confidence 3477888877777654 4554 588999987643
No 50
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=39.30 E-value=10 Score=38.14 Aligned_cols=54 Identities=13% Similarity=0.313 Sum_probs=34.3
Q ss_pred HHHHHHhcCCCEEEEecCC---CCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEE
Q 011761 253 IGKVMEVFRPGAVVLQCGA---DSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLL 306 (478)
Q Consensus 253 v~pv~~~f~Pd~IVvqaG~---D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~l 306 (478)
+..++++++||+||..+|+ |....+|...+.+...+-..+.+.++..+.|++.+
T Consensus 43 ~~~~~~~~~pd~Vin~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~ 99 (286)
T PF04321_consen 43 VAKLLEAFKPDVVINCAAYTNVDACEKNPEEAYAINVDATKNLAEACKERGARLIHI 99 (286)
T ss_dssp HHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEE
T ss_pred HHHHHHHhCCCeEeccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEe
Confidence 4456678899999999986 34445666666666777778888888889888754
No 51
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=38.48 E-value=74 Score=34.64 Aligned_cols=70 Identities=14% Similarity=0.264 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCC-CCCCCCCCCCcccCHHhHHHHHHHHHh-c----CCCEEEEeCCCCCCcchhhhHH
Q 011761 248 LFKPIIGKVMEVFRPGAVVLQCGA-DSLSGDRLGCFNLSIKGHAECVKFMRS-F----NVPLLLLGGGGYTIRNVARCWC 321 (478)
Q Consensus 248 ~f~~iv~pv~~~f~Pd~IVvqaG~-D~l~gDpLG~~nLs~~g~~~~~~~l~~-~----~~pll~lggGGY~~~~var~w~ 321 (478)
-++..|..+.+.|+|++|+|..++ -...||-+ ..+++.++. . ++|++.+--.||.. +....|.
T Consensus 79 ~L~~aI~~~~~~~~P~~I~V~ttC~~eiIGDDi----------~~v~~~~~~~~p~~~~~pvi~v~tpgF~g-~~~~G~~ 147 (455)
T PRK14476 79 NVEEAILNICKKAKPKIIGLCTTGLTETRGDDV----------AGALKEIRARHPELADTPIVYVSTPDFKG-ALEDGWA 147 (455)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCcchHhhhhccH----------HHHHHHHHhhccccCCCeEEEecCCCCCC-cHHHHHH
Confidence 344556677788999999776654 66777742 234444443 2 68999999999976 4555555
Q ss_pred HHHhhHh
Q 011761 322 YETGVAL 328 (478)
Q Consensus 322 ~~t~~ll 328 (478)
.....++
T Consensus 148 ~a~~al~ 154 (455)
T PRK14476 148 AAVEAIV 154 (455)
T ss_pred HHHHHHH
Confidence 5444443
No 52
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=37.61 E-value=1.1e+02 Score=28.76 Aligned_cols=65 Identities=11% Similarity=0.173 Sum_probs=36.8
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCH----HhHHHHHHHHHhcCCCEEEE
Q 011761 231 SLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSI----KGHAECVKFMRSFNVPLLLL 306 (478)
Q Consensus 231 ~vNVPL~~G~~D~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~----~g~~~~~~~l~~~~~pll~l 306 (478)
.+|..+...+. ...+..|. ..+..++||+||++.|..=.. . .++. +.+..+++.++..+..++++
T Consensus 46 v~N~Gi~G~tt-~~~~~rl~----~~l~~~~pd~Vii~~GtND~~----~--~~~~~~~~~~l~~li~~~~~~~~~~ill 114 (191)
T PRK10528 46 VVNASISGDTS-QQGLARLP----ALLKQHQPRWVLVELGGNDGL----R--GFPPQQTEQTLRQIIQDVKAANAQPLLM 114 (191)
T ss_pred EEecCcCcccH-HHHHHHHH----HHHHhcCCCEEEEEeccCcCc----c--CCCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 45554443332 23344443 344567999999999976432 1 2444 34455666777666555444
No 53
>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases. The 3'-5' exonuclease domain of archaeal proteins with similarity to Sulfurisphaera ohwakuensis DNA polymerase B3. B3 is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. B3 exhibits both polymerase and 3'-5' exonuclease activities. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Archaeal proteins that are involved in DNA replicatio
Probab=36.50 E-value=1.8e+02 Score=27.54 Aligned_cols=88 Identities=24% Similarity=0.347 Sum_probs=54.6
Q ss_pred cEEEEeccccCCcccccccccCCceEEeecCCCCCCCCCCCCCCcccCCCCCccEEecCCCCCCChHHHHHHHHHHHHHH
Q 011761 177 RVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIGKV 256 (478)
Q Consensus 177 RVl~IDiDvHHGDGtqeaF~~d~~VltiSiH~~~~ffPgTG~~~eiG~g~G~~~~vNVPL~~G~~D~~y~~~f~~iv~pv 256 (478)
|+|.+||-+.-..|..++ ..+.|+.||++... |. ...+. ..+.+..+.+..|.. .
T Consensus 4 ~~l~fDIEt~~~~gfp~~--~~d~Ii~Is~~~~~------g~----------~~~~~---~~~~~E~~lL~~F~~----~ 58 (188)
T cd05781 4 KTLAFDIEVYSKYGTPNP--RRDPIIVISLATSN------GD----------VEFIL---AEGLDDRKIIREFVK----Y 58 (188)
T ss_pred eEEEEEEEecCCCCCCCC--CCCCEEEEEEEeCC------CC----------EEEEE---ecCCCHHHHHHHHHH----H
Confidence 799999999855564333 34689999986631 00 01111 124556677777754 5
Q ss_pred HHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCE
Q 011761 257 MEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPL 303 (478)
Q Consensus 257 ~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pl 303 (478)
+++++||+|+ |+.+..-| ..-+.+.++.+++++
T Consensus 59 i~~~dPd~i~---gyN~~~FD-----------lpyl~~Ra~~~gi~~ 91 (188)
T cd05781 59 VKEYDPDIIV---GYNSNAFD-----------WPYLVERARVLGVKL 91 (188)
T ss_pred HHHcCCCEEE---ecCCCcCc-----------HHHHHHHHHHhCCCc
Confidence 5679999988 65554444 344666677777764
No 54
>PLN02825 amino-acid N-acetyltransferase
Probab=36.03 E-value=66 Score=35.79 Aligned_cols=62 Identities=11% Similarity=0.274 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCc
Q 011761 245 YHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIR 314 (478)
Q Consensus 245 y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~lggGGY~~~ 314 (478)
|...|++.. |-+..|+=..+||-.|-.++..+ . ...+..-+.+|.+.++++++|.|||..+.
T Consensus 1 ~v~~fr~a~-pYI~~~rgktfVIk~gG~~l~~~---~----~~~l~~DialL~~lGi~~VlVHGggpqI~ 62 (515)
T PLN02825 1 FVRWFREAW-PYIQGHRGSTFVVVISGEVVAGP---H----LDNILQDISLLHGLGIKFVLVPGTHVQID 62 (515)
T ss_pred ChhHHHhhh-HHHHHHCCCEEEEEECchhhcCc---h----HHHHHHHHHHHHHCCCCEEEEcCCCHHHH
Confidence 456677765 66899999999999998887633 1 23445567788889999999999998764
No 55
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=35.93 E-value=1.1e+02 Score=32.98 Aligned_cols=69 Identities=12% Similarity=0.183 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCC-CCCCCCCCCCcccCHHhHHHHHHHHHh-----cCCCEEEEeCCCCCCcchhhhHH
Q 011761 248 LFKPIIGKVMEVFRPGAVVLQCGA-DSLSGDRLGCFNLSIKGHAECVKFMRS-----FNVPLLLLGGGGYTIRNVARCWC 321 (478)
Q Consensus 248 ~f~~iv~pv~~~f~Pd~IVvqaG~-D~l~gDpLG~~nLs~~g~~~~~~~l~~-----~~~pll~lggGGY~~~~var~w~ 321 (478)
-++..|..+.+.|+|++|+|...+ ....||-+ ..+++.++. .++|++.+--.||.. +....|.
T Consensus 78 ~L~~~I~~~~~~~~P~~I~V~ttC~~eiIGDDi----------~~v~~~~~~e~p~~~~~pvi~v~tpgf~g-~~~~G~~ 146 (432)
T TIGR01285 78 HIEEAIDTLCQRNKPKAIGLLSTGLTETRGEDI----------ARVVRQFREKHPQHKGTAVVTVNTPDFKG-SLEDGYA 146 (432)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccccccCH----------HHHHHHHHhhcccccCCeEEEecCCCcCC-chHHHHH
Confidence 344566678889999988776654 44566643 235555543 378999999999986 4455554
Q ss_pred HHHhhH
Q 011761 322 YETGVA 327 (478)
Q Consensus 322 ~~t~~l 327 (478)
.....+
T Consensus 147 ~a~~al 152 (432)
T TIGR01285 147 AAVESI 152 (432)
T ss_pred HHHHHH
Confidence 333333
No 56
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=35.91 E-value=1.3e+02 Score=29.75 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeC
Q 011761 248 LFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGG 308 (478)
Q Consensus 248 ~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~lgg 308 (478)
+++.++. .+++-+||+||+. || +..+....+.+..+++.+..++.|++++-|
T Consensus 19 ~le~l~~-~~~~~~~D~vv~~-------GD-l~~~g~~~~~~~~~l~~l~~l~~pv~~V~G 70 (224)
T cd07388 19 ALEKLVG-LAPETGADAIVLI-------GN-LLPKAAKSEDYAAFFRILGEAHLPTFYVPG 70 (224)
T ss_pred HHHHHHH-HHhhcCCCEEEEC-------CC-CCCCCCCHHHHHHHHHHHHhcCCceEEEcC
Confidence 4444443 4566789987743 45 333444567778888888888999998864
No 57
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=34.86 E-value=1.6e+02 Score=31.58 Aligned_cols=73 Identities=14% Similarity=0.231 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecCC-CCCCCCCCCCcccCHHhHHHHHHHHH-hcCCCEEEEeCCCCCCcchhhhHHHHH
Q 011761 247 YLFKPIIGKVMEVFRPGAVVLQCGA-DSLSGDRLGCFNLSIKGHAECVKFMR-SFNVPLLLLGGGGYTIRNVARCWCYET 324 (478)
Q Consensus 247 ~~f~~iv~pv~~~f~Pd~IVvqaG~-D~l~gDpLG~~nLs~~g~~~~~~~l~-~~~~pll~lggGGY~~~~var~w~~~t 324 (478)
.-++..|..+.+.|+|++|+|...+ ..+.||- ...+++.++ ..++|++.+--.||...+....|....
T Consensus 75 ~kL~~aI~~~~~~~~P~~I~V~ttC~~~iIGdD----------i~~v~~~~~~~~~~pvi~v~t~gf~g~~~~~G~~~a~ 144 (426)
T cd01972 75 KKLEDTIKEAYSRYKPKAIFVATSCATGIIGDD----------VESVVEELEDEIGIPVVALHCEGFKGKHWRSGFDAAF 144 (426)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCChHHHhccC----------HHHHHHHHHHhhCCCEEEEeCCccCCccHhHHHHHHH
Confidence 3455667778889999988877654 3344443 233555554 468999999999998866555555544
Q ss_pred hhHhC
Q 011761 325 GVALG 329 (478)
Q Consensus 325 ~~llg 329 (478)
..++.
T Consensus 145 ~al~~ 149 (426)
T cd01972 145 HGILR 149 (426)
T ss_pred HHHHH
Confidence 44443
No 58
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=34.51 E-value=1.5e+02 Score=32.04 Aligned_cols=49 Identities=14% Similarity=0.172 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHh
Q 011761 242 DESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRS 298 (478)
Q Consensus 242 D~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~ 298 (478)
..+...+|++++. ++.+.+||+||++ ||=.-.-.-|.+...++.+.|+.
T Consensus 24 ~~D~~~~f~eil~-~a~~~~vD~VLia-------GDLFd~~~Ps~~~~~~~~~~lr~ 72 (405)
T TIGR00583 24 GDDSWNTFEEVLQ-IAKEQDVDMILLG-------GDLFHENKPSRKSLYQVLRSLRL 72 (405)
T ss_pred hhhHHHHHHHHHH-HHHHcCCCEEEEC-------CccCCCCCCCHHHHHHHHHHHHH
Confidence 3567788988886 4678899999863 45444445566667777777664
No 59
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=34.48 E-value=1.1e+02 Score=28.40 Aligned_cols=45 Identities=11% Similarity=0.096 Sum_probs=26.7
Q ss_pred CCCEEEEecCCCCCCCCCCCCcccCHHhHH----HHHHHHHhcCCCEEEE
Q 011761 261 RPGAVVLQCGADSLSGDRLGCFNLSIKGHA----ECVKFMRSFNVPLLLL 306 (478)
Q Consensus 261 ~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~----~~~~~l~~~~~pll~l 306 (478)
+||+|||+.|..=..... .....+.+-|. ++++.+++.+.+++++
T Consensus 65 ~pdlVii~~G~ND~~~~~-~~~~~~~~~~~~nl~~ii~~~~~~~~~~il~ 113 (198)
T cd01821 65 PGDYVLIQFGHNDQKPKD-PEYTEPYTTYKEYLRRYIAEARAKGATPILV 113 (198)
T ss_pred CCCEEEEECCCCCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 799999999975443321 11123444444 4666667667665554
No 60
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=33.71 E-value=1.1e+02 Score=31.06 Aligned_cols=63 Identities=16% Similarity=0.319 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCC
Q 011761 244 SYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTI 313 (478)
Q Consensus 244 ~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~lggGGY~~ 313 (478)
+....|++.. |-+.+|+=..+||-+|-+++..+.+ .+.+.+=+.++...+.+++++.|||.-.
T Consensus 6 ~~~~~~~~~~-pyi~~~~~~~~VIk~gG~~~~~~~l------~~~~~~di~~l~~~g~~~VlVHGgg~~i 68 (284)
T CHL00202 6 ERVQVLSEAL-PYIQKFRGRIMVIKYGGAAMKNLIL------KADIIKDILFLSCIGLKIVVVHGGGPEI 68 (284)
T ss_pred HHHHHHHHHH-HHHHHHcCCeEEEEEChHHhcCcch------HHHHHHHHHHHHHCCCcEEEEeCCcHHH
Confidence 5567787775 5678899899999999777654321 1223445556677899999999998854
No 61
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=32.80 E-value=87 Score=33.62 Aligned_cols=58 Identities=17% Similarity=0.324 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcCCCEEEEec-CCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCcch
Q 011761 249 FKPIIGKVMEVFRPGAVVLQC-GADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNV 316 (478)
Q Consensus 249 f~~iv~pv~~~f~Pd~IVvqa-G~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~lggGGY~~~~v 316 (478)
++..|..+.++|+|++|+|.. ......||. ...+++.++..+.|++.+--.||.....
T Consensus 74 L~~~I~~~~~~~~p~~I~V~ttC~~~~IGdD----------i~~v~~~~~~~~~~vi~v~t~gf~g~~~ 132 (427)
T cd01971 74 LRELIKSTLSIIDADLFVVLTGCIAEIIGDD----------VGAVVSEFQEGGAPIVYLETGGFKGNNY 132 (427)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCCcHHHhhcC----------HHHHHHHhhhcCCCEEEEECCCcCcccc
Confidence 445566778889999776654 445555554 2335555566788999998888987543
No 62
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=31.87 E-value=1.2e+02 Score=26.01 Aligned_cols=44 Identities=14% Similarity=0.144 Sum_probs=26.9
Q ss_pred HHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCC--CEEEEeCC
Q 011761 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNV--PLLLLGGG 309 (478)
Q Consensus 255 pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~--pll~lggG 309 (478)
..+.+.+||+|.+++-.+. +.....++++.+++.+. ..+++||.
T Consensus 44 ~~~~~~~pdvV~iS~~~~~-----------~~~~~~~~i~~l~~~~~~~~~i~vGG~ 89 (119)
T cd02067 44 EAAKEEDADAIGLSGLLTT-----------HMTLMKEVIEELKEAGLDDIPVLVGGA 89 (119)
T ss_pred HHHHHcCCCEEEEeccccc-----------cHHHHHHHHHHHHHcCCCCCeEEEECC
Confidence 4567899999999765222 22334567788887643 34445443
No 63
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=31.75 E-value=2.9e+02 Score=28.01 Aligned_cols=57 Identities=26% Similarity=0.389 Sum_probs=34.2
Q ss_pred hcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHh-c-CCCEEEEeCCCCCCcchhhhHHHHHhhHhC
Q 011761 259 VFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRS-F-NVPLLLLGGGGYTIRNVARCWCYETGVALG 329 (478)
Q Consensus 259 ~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~-~-~~pll~lggGGY~~~~var~w~~~t~~llg 329 (478)
.-.+|.|+++-=.-+..-| + +.++.+++ . ..| +++|||=++.|+.+.|.+.-++.+|
T Consensus 169 ~~~aDavivtG~~TG~~~d------~------~~l~~vr~~~~~~P--vllggGvt~eNv~e~l~~adGviVg 227 (257)
T TIGR00259 169 RGLADAVILSGKTTGTEVD------L------ELLKLAKETVKDTP--VLAGSGVNLENVEELLSIADGVIVA 227 (257)
T ss_pred hcCCCEEEECcCCCCCCCC------H------HHHHHHHhccCCCe--EEEECCCCHHHHHHHHhhCCEEEEC
Confidence 3448999886322222211 2 24555554 2 456 4678999999999999863344444
No 64
>COG2755 TesA Lysophospholipase L1 and related esterases [Amino acid transport and metabolism]
Probab=31.45 E-value=4.2e+02 Score=24.69 Aligned_cols=93 Identities=14% Similarity=0.150 Sum_probs=48.4
Q ss_pred HHHHHHhcC-CCEEEEecCCCCCCCCCCCCcc----cCHHhHHHHHHHHHhcCCC-----EEEEeCCCCCC------cch
Q 011761 253 IGKVMEVFR-PGAVVLQCGADSLSGDRLGCFN----LSIKGHAECVKFMRSFNVP-----LLLLGGGGYTI------RNV 316 (478)
Q Consensus 253 v~pv~~~f~-Pd~IVvqaG~D~l~gDpLG~~n----Ls~~g~~~~~~~l~~~~~p-----ll~lggGGY~~------~~v 316 (478)
+..++.... ||+|+++.|..=.. |...+. ....-+.++++.+++.+.+ +-++..+-+++ ...
T Consensus 68 l~~~l~~~~~~d~v~i~lG~ND~~--~~~~~~p~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 145 (216)
T COG2755 68 LPALLKQHLPPDLVIIMLGGNDIG--PLRGFSPNAAEFTKNLRQLIQALRKANPLAGLTPIPVLLVGIAPPFIATDFPTY 145 (216)
T ss_pred hHHHHhccCCCCEEEEEeeccccc--hhcccCccHHHHHHHHHHHHHHHHHhcccccccccceeEEEecCCccccchhHH
Confidence 334444555 99999999986654 222221 1222334567777776522 22222344443 444
Q ss_pred hhhHHHHHhhHhCCcCC-CCCCCcccccccCC
Q 011761 317 ARCWCYETGVALGVEVD-DKMPQHEYYEYFGP 347 (478)
Q Consensus 317 ar~w~~~t~~llg~~~~-~~iP~~~~~~~~~p 347 (478)
.+-|-.-..-.+..-.. ..+|..++|..+.+
T Consensus 146 ~~~~~~~~~~~~~~la~~~~v~~~d~~~~~~~ 177 (216)
T COG2755 146 GADWFHAANEILAQLANELFVPLADLFDAGVD 177 (216)
T ss_pred HHHHHHHHHHHHHHhhhhcCccchHHHhcccc
Confidence 55555544444433233 44677777765553
No 65
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=31.20 E-value=1.6e+02 Score=26.00 Aligned_cols=42 Identities=24% Similarity=0.284 Sum_probs=32.1
Q ss_pred HHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCC
Q 011761 256 VMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYT 312 (478)
Q Consensus 256 v~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~lggGGY~ 312 (478)
.+...++|.||+.+| |+ +|...++.+++.|.++++++-.+..
T Consensus 94 ~~~~~~~d~ivLvSg-D~--------------Df~~~i~~lr~~G~~V~v~~~~~~~ 135 (149)
T cd06167 94 LAYKRRIDTIVLVSG-DS--------------DFVPLVERLRELGKRVIVVGFEAKT 135 (149)
T ss_pred HhhhcCCCEEEEEEC-Cc--------------cHHHHHHHHHHcCCEEEEEccCccC
Confidence 344448999999998 44 4667899999999999988766333
No 66
>PRK13236 nitrogenase reductase; Reviewed
Probab=30.96 E-value=51 Score=33.48 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=18.5
Q ss_pred HHhcCCcEEEEeccccCCcccccccc
Q 011761 171 LLKQHERVLYVDIDIHHGDGVEEAFY 196 (478)
Q Consensus 171 ll~~~~RVl~IDiDvHHGDGtqeaF~ 196 (478)
|.+..+|||+||.|.++++ +.-+|.
T Consensus 30 La~~G~rVLliD~D~q~~~-~~~l~~ 54 (296)
T PRK13236 30 MAEMGQRILIVGCDPKADS-TRLMLH 54 (296)
T ss_pred HHHCCCcEEEEEccCCCCc-cchhcc
Confidence 3345799999999999887 444443
No 67
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=30.60 E-value=3.6e+02 Score=28.71 Aligned_cols=124 Identities=14% Similarity=0.223 Sum_probs=70.0
Q ss_pred CCCC--ChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCC-CCCCCCcccCHHhHHHHHHHHHhc-CCCEEEE--eCCC
Q 011761 237 DDGI--DDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLS-GDRLGCFNLSIKGHAECVKFMRSF-NVPLLLL--GGGG 310 (478)
Q Consensus 237 ~~G~--~D~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~-gDpLG~~nLs~~g~~~~~~~l~~~-~~pll~l--ggGG 310 (478)
+.|+ +-++++.+.+. +...-++++|++.||+=++. +-|.-.++|. .+..+++. +.|+++= .+.|
T Consensus 214 k~G~~~t~ee~~~A~e~----i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~------ai~~lk~~~~lPVi~DpsH~~G 283 (352)
T PRK13396 214 KRGMAATIDEWLMAAEY----ILAAGNPNVILCERGIRTFDRQYTRNTLDLS------VIPVLRSLTHLPIMIDPSHGTG 283 (352)
T ss_pred eCCCCCCHHHHHHHHHH----HHHcCCCeEEEEecCCccCcCCCCCCCcCHH------HHHHHHHhhCCCEEECCcccCC
Confidence 4454 45677766654 44566789999999995553 2233445553 56666664 8998753 4457
Q ss_pred CCCcchhhhHHHHHhhHhCCc--CCCCCCCcccccccCCCCccccCCCCCCCcCcHHHHHHHHHHHHHHhhcCCCCC
Q 011761 311 YTIRNVARCWCYETGVALGVE--VDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAP 385 (478)
Q Consensus 311 Y~~~~var~w~~~t~~llg~~--~~~~iP~~~~~~~~~p~~~l~~~~~~~~~~n~~~~l~~i~~~~~~~l~~l~~ap 385 (478)
|..-..+ ...+++.+|.+ +-+. ++-|+-.+ +.-+..=+++.++++.+.+..-...+...|
T Consensus 284 ~sd~~~~---~a~AAva~GAdGliIE~--------H~~pd~Al----sD~~qsl~p~~~~~l~~~i~~i~~~~g~~~ 345 (352)
T PRK13396 284 KSEYVPS---MAMAAIAAGTDSLMIEV--------HPNPAKAL----SDGPQSLTPDRFDRLMQELAVIGKTVGRWP 345 (352)
T ss_pred cHHHHHH---HHHHHHhhCCCeEEEEe--------cCCcccCC----ChhhhcCCHHHHHHHHHHHHHHHHHhCCCC
Confidence 7754433 33455667754 2111 11122221 122333457778888777777666655543
No 68
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=30.48 E-value=1e+02 Score=31.15 Aligned_cols=95 Identities=23% Similarity=0.306 Sum_probs=48.4
Q ss_pred HHHHHhcCCcEEEEeccccCCcccccccccCCceEEeecCCCCCCCCCCCCCCcccCCCCCccEEecCCCCCCChHHHHH
Q 011761 168 ILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHY 247 (478)
Q Consensus 168 i~~ll~~~~RVl~IDiDvHHGDGtqeaF~~d~~VltiSiH~~~~ffPgTG~~~eiG~g~G~~~~vNVPL~~G~~D~~y~~ 247 (478)
+.-+....+||++||.|+=-|| +...|--++.-.| +|.+ --+.-.+.|+=...+ ...+.+ ||.+.+-+++..
T Consensus 25 a~~~~~~~k~V~~iDaD~g~~n-L~~~~g~~~~~~~--l~dv---L~~~~~~~Di~~~~~-~~gl~v-ipg~~~~~~~~~ 96 (262)
T COG0455 25 AALAALGGKVVLLIDADLGLGN-LSLLLGVESKPTT--LHDV---LAGEASIEDIIYETP-QDGLYV-LPGGSGLEDLAK 96 (262)
T ss_pred HHHHhhCCCeEEEEecCCCCCc-HHHHhCCCCCccc--HHHH---HhCCCCHhHeeeecC-cCCEEE-eeCCCChHHHhh
Confidence 3344455688899999997776 1122322222222 3333 111222233221111 011222 466777677755
Q ss_pred HH----HHHHHHHHHhcCCCEEEEecCCC
Q 011761 248 LF----KPIIGKVMEVFRPGAVVLQCGAD 272 (478)
Q Consensus 248 ~f----~~iv~pv~~~f~Pd~IVvqaG~D 272 (478)
+. +.++..+.+.+ |+||+-||.-
T Consensus 97 ~~~~~~~~~~~~l~~~~--D~iliD~~aG 123 (262)
T COG0455 97 LDPEDLEDVIKELEELY--DYILIDTGAG 123 (262)
T ss_pred cCHHHHHHHHHHHHhcC--CEEEEeCCCC
Confidence 43 34666655555 9999999943
No 69
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=30.09 E-value=1.1e+02 Score=29.19 Aligned_cols=36 Identities=6% Similarity=0.034 Sum_probs=26.8
Q ss_pred HHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCC
Q 011761 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNV 301 (478)
Q Consensus 255 pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~ 301 (478)
..+++.+||+|.+|+=... +.....+.++.+++.+.
T Consensus 129 ~~~~~~~pd~v~lS~~~~~-----------~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 129 EKVKKEKPLMLTGSALMTT-----------TMYGQKDINDKLKEEGY 164 (197)
T ss_pred HHHHHcCCCEEEEcccccc-----------CHHHHHHHHHHHHHcCC
Confidence 5678999999999985333 34456778889988744
No 70
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=29.83 E-value=2.1e+02 Score=30.70 Aligned_cols=71 Identities=11% Similarity=0.140 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhcCCCEEEEe-cCCCCCCCCCCCCcccCHHhHHHHHHHHHh----cCCCEEEEeCCCCCCcchhhhHHH
Q 011761 248 LFKPIIGKVMEVFRPGAVVLQ-CGADSLSGDRLGCFNLSIKGHAECVKFMRS----FNVPLLLLGGGGYTIRNVARCWCY 322 (478)
Q Consensus 248 ~f~~iv~pv~~~f~Pd~IVvq-aG~D~l~gDpLG~~nLs~~g~~~~~~~l~~----~~~pll~lggGGY~~~~var~w~~ 322 (478)
-+++.|..+.+.|+|++|+|. +......||. +..+++.++. .+.|++.+--.||.. +....|..
T Consensus 71 kL~~aI~~~~~~~~P~~I~V~ttc~~~iiGdD----------i~~v~~~~~~~~~~~~~~vi~v~t~gF~g-~~~~G~~~ 139 (429)
T cd03466 71 NLKKGLKNVIEQYNPEVIGIATTCLSETIGED----------VPRIIREFREEVDDSEPKIIPASTPGYGG-THVEGYDT 139 (429)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHhhcC----------HHHHHHHHhhcccCCCCcEEEEECCCCcc-cHHHHHHH
Confidence 445666778889999976554 4445555654 2335555554 377999998899974 45455555
Q ss_pred HHhhHhC
Q 011761 323 ETGVALG 329 (478)
Q Consensus 323 ~t~~llg 329 (478)
....++.
T Consensus 140 a~~al~~ 146 (429)
T cd03466 140 AVRSIVK 146 (429)
T ss_pred HHHHHHH
Confidence 4444443
No 71
>PLN02512 acetylglutamate kinase
Probab=29.69 E-value=1.3e+02 Score=30.94 Aligned_cols=64 Identities=20% Similarity=0.334 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCC
Q 011761 243 ESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTI 313 (478)
Q Consensus 243 ~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~lggGGY~~ 313 (478)
-.|.+.|+++. |-+..|+=..+||-.|-+++.... + .+.+.+-+..++..+.+++++.|||...
T Consensus 29 ~~~~~~~r~~~-pyi~~~~~~tiVIKlGGs~i~d~~-----~-~~~~~~di~~l~~~g~~iVlVHGgG~~i 92 (309)
T PLN02512 29 LSRVDILSEAL-PFIQRFRGKTVVVKYGGAAMKDPE-----L-KAGVIRDLVLLSCVGLRPVLVHGGGPEI 92 (309)
T ss_pred HHHHHHHHHHh-HHHHHHCCCeEEEEECCeeccChh-----H-HHHHHHHHHHHHHCCCCEEEEECCcHHH
Confidence 37888898875 678899989999999976654322 1 1122233346677888999999998853
No 72
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=29.61 E-value=25 Score=28.12 Aligned_cols=51 Identities=22% Similarity=0.514 Sum_probs=41.0
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhH----HHHHHHHHhcCC
Q 011761 251 PIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGH----AECVKFMRSFNV 301 (478)
Q Consensus 251 ~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~----~~~~~~l~~~~~ 301 (478)
+++..+.++|+-++=|++++.|...+.|+|.+-+...|- .+.+++|++.++
T Consensus 17 piis~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~~~v 71 (76)
T PF09383_consen 17 PIISQLIREFGVDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLREQGV 71 (76)
T ss_dssp CHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHHTTE
T ss_pred hHHHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHHCCC
Confidence 678889999999999999999999999999987776554 456677776554
No 73
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=29.57 E-value=1.6e+02 Score=24.69 Aligned_cols=55 Identities=25% Similarity=0.427 Sum_probs=32.2
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHhcCC-CEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeC
Q 011761 234 VPLDDGIDDESYHYLFKPIIGKVMEVFRP-GAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGG 308 (478)
Q Consensus 234 VPL~~G~~D~~y~~~f~~iv~pv~~~f~P-d~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~lgg 308 (478)
|-+|+|++|.. +.+++ .... .+|||..-- .++...-.+.++++++.++|++-+.|
T Consensus 6 iD~PPGTgD~~-l~~~~--------~~~~~g~ivVTTPq-----------~la~~dv~r~~~~~~~~~vpilGvVE 61 (81)
T PF10609_consen 6 IDLPPGTGDEH-LTLMQ--------YLPIDGAIVVTTPQ-----------ELALADVRRAIDMFRKLNVPILGVVE 61 (81)
T ss_dssp EE--SCSSSHH-HHHHH--------HH--SEEEEEE-CC-----------C--HHHHHHHHHHHHCTT-EEEEEEE
T ss_pred EeCCCCCCcHH-HHHHH--------hCCCCeEEEEeCCH-----------HHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 45789999864 33332 2224 477776652 35666678899999999999996654
No 74
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=28.86 E-value=3.4e+02 Score=27.47 Aligned_cols=77 Identities=14% Similarity=0.225 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHh-cCCCEEE--EeCCCCCCcchhh
Q 011761 242 DESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRS-FNVPLLL--LGGGGYTIRNVAR 318 (478)
Q Consensus 242 D~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~-~~~pll~--lggGGY~~~~var 318 (478)
=++++.+. ..+...-+++++++.||.=+..+-|.-..+| ..+..+++ ++.||++ -.+-|+..-..+-
T Consensus 147 ~~e~~~A~----e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl------~~i~~lk~~~~~pV~~D~sHs~G~~~~v~~~ 216 (266)
T PRK13398 147 LEEWLYAA----EYIMSEGNENVVLCERGIRTFETYTRNTLDL------AAVAVIKELSHLPIIVDPSHATGRRELVIPM 216 (266)
T ss_pred HHHHHHHH----HHHHhcCCCeEEEEECCCCCCCCCCHHHHHH------HHHHHHHhccCCCEEEeCCCcccchhhHHHH
Confidence 35666554 3344566899999999975444333223333 25566665 4889877 3444543322222
Q ss_pred hHHHHHhhHhCCc
Q 011761 319 CWCYETGVALGVE 331 (478)
Q Consensus 319 ~w~~~t~~llg~~ 331 (478)
..+++.+|..
T Consensus 217 ---~~aAva~Ga~ 226 (266)
T PRK13398 217 ---AKAAIAAGAD 226 (266)
T ss_pred ---HHHHHHcCCC
Confidence 3455667753
No 75
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=28.68 E-value=1.9e+02 Score=32.02 Aligned_cols=62 Identities=15% Similarity=0.130 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCC-CCCCCCCCcccCHHhHHHHHHHHH-hcCCCEEEEeCCCCCCcchhhh
Q 011761 248 LFKPIIGKVMEVFRPGAVVLQCGADS-LSGDRLGCFNLSIKGHAECVKFMR-SFNVPLLLLGGGGYTIRNVARC 319 (478)
Q Consensus 248 ~f~~iv~pv~~~f~Pd~IVvqaG~D~-l~gDpLG~~nLs~~g~~~~~~~l~-~~~~pll~lggGGY~~~~var~ 319 (478)
.+...|..+.++|+|++|+|..++=+ +.||- ...+++.++ ..+.|++.+--.||......-.
T Consensus 72 kL~~~I~~~~~~~~P~~I~V~tTC~~eiIGDD----------i~~v~~~~~~~~~~pVi~v~t~~f~g~~~~g~ 135 (513)
T CHL00076 72 KVVDNITRKDKEERPDLIVLTPTCTSSILQED----------LQNFVDRASIESDSDVILADVNHYRVNELQAA 135 (513)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCchhhhhcC----------HHHHHHHhhcccCCCEEEeCCCCCcccHHHHH
Confidence 34455667889999999999877432 22332 233555554 3588999999999987554333
No 76
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=28.65 E-value=1e+02 Score=32.93 Aligned_cols=57 Identities=21% Similarity=0.220 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhcCCCEEEEecC-CCCCCCCCCCCcccCHHhHHHHHHHHH-hcCCCEEEEeCCCCCCc
Q 011761 248 LFKPIIGKVMEVFRPGAVVLQCG-ADSLSGDRLGCFNLSIKGHAECVKFMR-SFNVPLLLLGGGGYTIR 314 (478)
Q Consensus 248 ~f~~iv~pv~~~f~Pd~IVvqaG-~D~l~gDpLG~~nLs~~g~~~~~~~l~-~~~~pll~lggGGY~~~ 314 (478)
-++..|..+.++|+|++|+|... .....||.+ ..+++.++ ..+.|++.+--.||...
T Consensus 72 kL~~~I~~~~~~~~p~~I~v~~tC~~~iIGdDi----------~~v~~~~~~~~~~~vi~v~t~gf~g~ 130 (430)
T cd01981 72 KVVENITRKDKEEKPDLIVLTPTCTSSILQEDL----------QNFVRAAGLSSKSPVLPLDVNHYRVN 130 (430)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccHHHHhhCH----------HHHHHHhhhccCCCeEEecCCCccch
Confidence 34455667788899998877766 566666643 23444443 35889999988999864
No 77
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=28.58 E-value=1.4e+02 Score=31.54 Aligned_cols=66 Identities=18% Similarity=0.246 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhcCCCEEEEecC-CCCCCCCCCCCcccCHHhHHHHHHHHH-hcCCCEEEEeCCCCCCcchhhhHHHH
Q 011761 248 LFKPIIGKVMEVFRPGAVVLQCG-ADSLSGDRLGCFNLSIKGHAECVKFMR-SFNVPLLLLGGGGYTIRNVARCWCYE 323 (478)
Q Consensus 248 ~f~~iv~pv~~~f~Pd~IVvqaG-~D~l~gDpLG~~nLs~~g~~~~~~~l~-~~~~pll~lggGGY~~~~var~w~~~ 323 (478)
-++..|..+.++|+|++|+|..+ .....||. +..+++.++ ..++|++.+--.||...+....|...
T Consensus 74 ~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdD----------i~~v~~~~~~~~~~~vi~v~t~gf~g~~~~~G~~~a 141 (406)
T cd01967 74 KLKKAIKEAYERFPPKAIFVYSTCPTGLIGDD----------IEAVAKEASKELGIPVIPVNCEGFRGVSQSLGHHIA 141 (406)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCchhhhccC----------HHHHHHHHHHhhCCCEEEEeCCCeeCCcccHHHHHH
Confidence 45566778888999997766544 34555553 233555444 35789999988888775555555433
No 78
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=28.52 E-value=39 Score=28.17 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=42.1
Q ss_pred ecCCCCCCCCCCC-CcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCcchhhhH
Q 011761 268 QCGADSLSGDRLG-CFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCW 320 (478)
Q Consensus 268 qaG~D~l~gDpLG-~~nLs~~g~~~~~~~l~~~~~pll~lggGGY~~~~var~w 320 (478)
.++-+.++|+.++ .+.+|-....+.++.|+..|.+|..+.+=||........+
T Consensus 14 ~~~~~~~SGe~La~~LgiSRtaVwK~Iq~Lr~~G~~I~s~~~kGY~L~~~~~ll 67 (79)
T COG1654 14 LLTGNFVSGEKLAEELGISRTAVWKHIQQLREEGVDIESVRGKGYLLPQLPDLL 67 (79)
T ss_pred HcCCCcccHHHHHHHHCccHHHHHHHHHHHHHhCCceEecCCCceeccCccccC
Confidence 3455567777777 3788999999999999999999999988899986555443
No 79
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=28.32 E-value=7.1e+02 Score=28.79 Aligned_cols=17 Identities=29% Similarity=0.755 Sum_probs=14.3
Q ss_pred hcCCcEEEEeccccCCc
Q 011761 173 KQHERVLYVDIDIHHGD 189 (478)
Q Consensus 173 ~~~~RVl~IDiDvHHGD 189 (478)
...+|||+||.|.+++.
T Consensus 558 ~~G~rVLlID~D~r~~~ 574 (726)
T PRK09841 558 QSDQKVLFIDADLRRGY 574 (726)
T ss_pred hCCCeEEEEeCCCCCCc
Confidence 45689999999999875
No 80
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=28.15 E-value=2.1e+02 Score=28.43 Aligned_cols=54 Identities=13% Similarity=0.185 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHh-cCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeC
Q 011761 246 HYLFKPIIGKVMEV-FRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGG 308 (478)
Q Consensus 246 ~~~f~~iv~pv~~~-f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~lgg 308 (478)
...|+.+|..+... -+||+||+. | |-.. .-+.+.|..+.+.++.++.|+.++.|
T Consensus 39 ~~~l~~~i~~i~~~~~~~D~vvit-G-Dl~~-------~~~~~~~~~~~~~l~~l~~Pv~~v~G 93 (275)
T PRK11148 39 WESYQAVLEAIRAQQHEFDLIVAT-G-DLAQ-------DHSSEAYQHFAEGIAPLRKPCVWLPG 93 (275)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEC-C-CCCC-------CCCHHHHHHHHHHHhhcCCcEEEeCC
Confidence 44566777665443 579987753 3 3221 12457788888889889999988865
No 81
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=28.05 E-value=1.9e+02 Score=31.86 Aligned_cols=55 Identities=9% Similarity=0.228 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHH-hcCCCEEEEeCCCCCC
Q 011761 250 KPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMR-SFNVPLLLLGGGGYTI 313 (478)
Q Consensus 250 ~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~-~~~~pll~lggGGY~~ 313 (478)
+.++..++++|+|++|||..++=+ +-....++ .+++.+. ..++||+.+-..|+..
T Consensus 86 ~~~i~ei~~~~~p~~ifv~~TC~t------~iIGdDle---~va~~~~~~~gipVV~v~~~Gf~~ 141 (457)
T CHL00073 86 KRLCLQIKKDRNPSVIVWIGTCTT------EIIKMDLE---GMAPKLEAEIGIPIVVARANGLDY 141 (457)
T ss_pred HHHHHHHHHhCCCCEEEEEccCcH------HhhccCHH---HHHHHHHHhhCCCEEEEeCCCccC
Confidence 356778899999999999988532 22222333 2444443 5699999999999973
No 82
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=27.55 E-value=2e+02 Score=27.36 Aligned_cols=57 Identities=18% Similarity=0.304 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHh-cCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeC
Q 011761 243 ESYHYLFKPIIGKVMEV-FRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGG 308 (478)
Q Consensus 243 ~~y~~~f~~iv~pv~~~-f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~lgg 308 (478)
......|+.++..+.+. -+||+||+ +| |.... -+.+.|..+.+.+..+++|++++.|
T Consensus 21 ~~~~~~l~~~~~~i~~~~~~~d~vi~-~G-Dl~~~-------~~~~~~~~~~~~l~~~~~p~~~v~G 78 (240)
T cd07402 21 VDTAASLEAVLAHINALHPRPDLVLV-TG-DLTDD-------GSPESYERLRELLAALPIPVYLLPG 78 (240)
T ss_pred cCHHHHHHHHHHHHHhcCCCCCEEEE-Cc-cCCCC-------CCHHHHHHHHHHHhhcCCCEEEeCC
Confidence 45566677777654443 38997764 33 32221 1345667777888888999888754
No 83
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=27.27 E-value=1.6e+02 Score=27.56 Aligned_cols=36 Identities=28% Similarity=0.281 Sum_probs=22.8
Q ss_pred hcCCCEEEEecCC-CCCCCCCCCCcccCHHhH----HHHHHHHHhc
Q 011761 259 VFRPGAVVLQCGA-DSLSGDRLGCFNLSIKGH----AECVKFMRSF 299 (478)
Q Consensus 259 ~f~Pd~IVvqaG~-D~l~gDpLG~~nLs~~g~----~~~~~~l~~~ 299 (478)
..+||+|||..|. |... .++.+.+-| .++++.+++.
T Consensus 77 ~~~pd~vii~lGtND~~~-----~~~~~~~~~~~~l~~lv~~i~~~ 117 (208)
T cd01839 77 HSPLDLVIIMLGTNDLKS-----YFNLSAAEIAQGLGALVDIIRTA 117 (208)
T ss_pred CCCCCEEEEecccccccc-----ccCCCHHHHHHHHHHHHHHHHhc
Confidence 4799999999998 4432 233344444 4566666653
No 84
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=26.72 E-value=2.5e+02 Score=30.16 Aligned_cols=69 Identities=14% Similarity=0.284 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCC-CCCCCCCCCcccCHHhHHHHHHHHHh-----cCCCEEEEeCCCCCCcchhhhHHH
Q 011761 249 FKPIIGKVMEVFRPGAVVLQCGAD-SLSGDRLGCFNLSIKGHAECVKFMRS-----FNVPLLLLGGGGYTIRNVARCWCY 322 (478)
Q Consensus 249 f~~iv~pv~~~f~Pd~IVvqaG~D-~l~gDpLG~~nLs~~g~~~~~~~l~~-----~~~pll~lggGGY~~~~var~w~~ 322 (478)
+++.|..+.++|+|++|+|..++= ...||- ...+++.++. .+.|++.+--.||.. +....|..
T Consensus 69 L~~~i~~~~~~~~p~~I~V~ttc~~eiIGdD----------i~~v~~~~~~~~p~~~~~~vi~v~t~gf~g-~~~~G~~~ 137 (417)
T cd01966 69 LEEALDTLAERAKPKVIGLLSTGLTETRGED----------IAGALKQFRAEHPELADVPVVYVSTPDFEG-SLEDGWAA 137 (417)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcccccccC----------HHHHHHHHHhhccccCCCeEEEecCCCCCC-cHHHHHHH
Confidence 345566677889999887776532 223332 2334444443 378999999999987 35556655
Q ss_pred HHhhHh
Q 011761 323 ETGVAL 328 (478)
Q Consensus 323 ~t~~ll 328 (478)
....++
T Consensus 138 a~~al~ 143 (417)
T cd01966 138 AVEAII 143 (417)
T ss_pred HHHHHH
Confidence 444444
No 85
>CHL00175 minD septum-site determining protein; Validated
Probab=26.12 E-value=72 Score=31.70 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=16.4
Q ss_pred HHhcCCcEEEEeccccCCccc
Q 011761 171 LLKQHERVLYVDIDIHHGDGV 191 (478)
Q Consensus 171 ll~~~~RVl~IDiDvHHGDGt 191 (478)
|.+..+||++||.|.+.||-.
T Consensus 40 La~~g~~vlliD~D~~~~~l~ 60 (281)
T CHL00175 40 IARLGYRVALIDADIGLRNLD 60 (281)
T ss_pred HHhCCCeEEEEeCCCCCCChh
Confidence 334568999999999988743
No 86
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=25.81 E-value=1e+02 Score=31.45 Aligned_cols=61 Identities=13% Similarity=0.162 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCC
Q 011761 243 ESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTI 313 (478)
Q Consensus 243 ~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~lggGGY~~ 313 (478)
..|+..|..+-.+ -++.++||-.|-.++..+. ........+.+|.+.+.+.++|.|||-..
T Consensus 20 ~~~l~~f~~~~~~----~~~~f~VIK~GG~~~~~~~------~~~~l~~dla~L~~lGl~~VlVHGggp~i 80 (271)
T cd04236 20 RYWLTQFQIAMPN----DWPAFAVLEVDHSVFRSLE------MVQSLSFGLAFLQRMDMKLLVVMGLSAPD 80 (271)
T ss_pred HHHHHHhhccCCC----CCCCEEEEEEChhhhcCch------hHHHHHHHHHHHHHCCCeEEEEeCCChHH
Confidence 4566666543211 2457999999966664221 12345677889999999999999998754
No 87
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=25.43 E-value=2e+02 Score=30.74 Aligned_cols=56 Identities=13% Similarity=0.252 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhcCCCEEEEe-cCCCCCCCCCCCCcccCHHhHHHHHHHHHh-----cCCCEEEEeCCCCCC
Q 011761 248 LFKPIIGKVMEVFRPGAVVLQ-CGADSLSGDRLGCFNLSIKGHAECVKFMRS-----FNVPLLLLGGGGYTI 313 (478)
Q Consensus 248 ~f~~iv~pv~~~f~Pd~IVvq-aG~D~l~gDpLG~~nLs~~g~~~~~~~l~~-----~~~pll~lggGGY~~ 313 (478)
-+.+.|..+.+.|+|++|+|. +....+.||.+ ..+++.++. .+.|++.+--.||..
T Consensus 68 ~L~~~i~~~~~~~~p~~I~v~~tC~~~liGdDi----------~~v~~~~~~~~~~~~~~~vi~v~tpgf~g 129 (428)
T cd01965 68 NLIEALKNLLSRYKPDVIGVLTTCLTETIGDDV----------AGFIKEFRAEGPEPADFPVVYASTPSFKG 129 (428)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcchhhcCCCH----------HHHHHHHHhhccCCCCCeEEEeeCCCCCC
Confidence 344556677788999976554 44455556542 234444442 466777776667764
No 88
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=24.83 E-value=1.1e+02 Score=26.54 Aligned_cols=41 Identities=27% Similarity=0.247 Sum_probs=23.9
Q ss_pred HHHHHHhcCCcEEEEeccccCCccccc-----ccccCCceEEeecCCC
Q 011761 167 AILELLKQHERVLYVDIDIHHGDGVEE-----AFYTTDRVMTVSFHKF 209 (478)
Q Consensus 167 Ai~~ll~~~~RVl~IDiDvHHGDGtqe-----aF~~d~~VltiSiH~~ 209 (478)
++..+.+.+.-++++| ++|. .++.. .-.....+++.|+||.
T Consensus 113 ~l~~~~~~~~~~li~D-~a~~-~~~~~~~~~~~~~~~~d~~~~s~~K~ 158 (170)
T cd01494 113 EIRKIAKEYGILLLVD-AASA-GGASPAPGVLIPEGGADVVTFSLHKN 158 (170)
T ss_pred HHHHHHHHcCCEEEEe-cccc-cccccccccccccccCCEEEEEcccc
Confidence 3344445556677776 3343 33333 2223467999999997
No 89
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=24.79 E-value=2.8e+02 Score=30.28 Aligned_cols=70 Identities=7% Similarity=0.126 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhc-CCCEE-EEecCCCCCCCCCCCCcccCHHhHHHHHHHHHh---------cCCCEEEEeCCCCCCcchh
Q 011761 249 FKPIIGKVMEVF-RPGAV-VLQCGADSLSGDRLGCFNLSIKGHAECVKFMRS---------FNVPLLLLGGGGYTIRNVA 317 (478)
Q Consensus 249 f~~iv~pv~~~f-~Pd~I-VvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~---------~~~pll~lggGGY~~~~va 317 (478)
+++.|..+.+.| +|++| |++++.....||-+ ..+++.++. .++|++.+--+||.. +..
T Consensus 80 L~~ai~~~~~~~~~p~~i~v~ttc~~eiiGDDi----------~~v~~~~~~~~~~~~~p~~~~~ii~v~tpgF~g-s~~ 148 (461)
T TIGR02931 80 VEEAVDVLLTRYPDVKVVPIITTCSTEIIGDDV----------DGLISKLNEELLKEKFPDREVHLIPIHTPSFVG-SMI 148 (461)
T ss_pred HHHHHHHHHHhcCCCCEEEEECCchHHhhhcCH----------HHHHHHHHhhhcccccCCCCCeEEEeeCCCCCC-cHH
Confidence 456777888899 59986 66666777777743 234444432 257899999999987 455
Q ss_pred hhHHHHHhhHhC
Q 011761 318 RCWCYETGVALG 329 (478)
Q Consensus 318 r~w~~~t~~llg 329 (478)
..|......++.
T Consensus 149 ~Gy~~a~~ali~ 160 (461)
T TIGR02931 149 TGYDVAVHDFVK 160 (461)
T ss_pred HHHHHHHHHHHH
Confidence 566554444443
No 90
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=24.68 E-value=2.6e+02 Score=28.97 Aligned_cols=98 Identities=12% Similarity=0.236 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCC-------------------CCCcc----cCHHhHHHHHHHHHh
Q 011761 242 DESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDR-------------------LGCFN----LSIKGHAECVKFMRS 298 (478)
Q Consensus 242 D~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDp-------------------LG~~n----Ls~~g~~~~~~~l~~ 298 (478)
-...-.+.+.++..+. ..+.+++-+.-|+..+..+. ||.-. .+.+.+.++++.|+.
T Consensus 11 apG~Na~i~~vv~~a~-~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~LgtsR~~~~~~~~~~~~~~~~l~~ 89 (301)
T TIGR02482 11 APGMNAAIRAVVRTAI-YHGFEVYGIRRGYKGLINGEIKPLESKNVSGIIHRGGTILGTARCPEFKTEEGRQKAVENLKK 89 (301)
T ss_pred cHHHHHHHHHHHHHHH-HCCCEEEEEecCHHHhcCCCeEeCCHHHHhhHHhCCCceeccCCCCccCCHHHHHHHHHHHHH
Confidence 3455566666666543 34667888888888775432 11111 134567788999999
Q ss_pred cCCCEEEEeCCCCCCcchhhhHHHHHhhHhCC--cCCCCCCCcc
Q 011761 299 FNVPLLLLGGGGYTIRNVARCWCYETGVALGV--EVDDKMPQHE 340 (478)
Q Consensus 299 ~~~pll~lggGGY~~~~var~w~~~t~~llg~--~~~~~iP~~~ 340 (478)
+++..|++.||-=+.+...+.+.+.---.+|. .++|++|..+
T Consensus 90 ~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTIDNDl~~td 133 (301)
T TIGR02482 90 LGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTIDNDIPGTD 133 (301)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHhhCCCEEeecccccCCCcCcc
Confidence 99999998888666555555443211112333 2567777544
No 91
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=24.65 E-value=93 Score=32.73 Aligned_cols=59 Identities=19% Similarity=0.429 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHh----HHHHHHHHHhcCCCEEEE
Q 011761 248 LFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKG----HAECVKFMRSFNVPLLLL 306 (478)
Q Consensus 248 ~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g----~~~~~~~l~~~~~pll~l 306 (478)
+..+++..++++|..++=|++.+.|-..+.|+|.+-+...| ......++...+..+=++
T Consensus 275 ~~~plis~~~~~~~v~~nIl~G~I~~~~~~~~G~L~v~l~g~~~~~~~a~~~l~~~~v~~evl 337 (339)
T COG1135 275 ADQPLLSEVARRFGVDVNILSGNIDEIQGQPFGSLVVELEGDDEEIAAAIEYLNEHGVKVEVL 337 (339)
T ss_pred ccchHHHHHHHHhCCceEEEecchhhhCCCcceEEEEEecCchhhHHHHHHHHHHcCceEEec
Confidence 34588889999999999999999999999999998776666 445666777766655444
No 92
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=24.65 E-value=1.8e+02 Score=28.83 Aligned_cols=79 Identities=13% Similarity=0.231 Sum_probs=44.5
Q ss_pred HhHHHHHHHHHhcCCCEEEEeCCCCCCcchhhhHHHHHhhHhCCcCCCCCCCcccccccCCCCccccCCCCCCCcCcHHH
Q 011761 287 KGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQL 366 (478)
Q Consensus 287 ~g~~~~~~~l~~~~~pll~lggGGY~~~~var~w~~~t~~llg~~~~~~iP~~~~~~~~~p~~~l~~~~~~~~~~n~~~~ 366 (478)
.|..++++.|+..|..+.++ .||+. |...-.+-.||.+..+.--..--|.+.|---...+........-..+.
T Consensus 91 ~Gi~eLv~~L~~~~~~v~li-SGGF~------~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~ 163 (227)
T KOG1615|consen 91 PGIRELVSRLHARGTQVYLI-SGGFR------QLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAEV 163 (227)
T ss_pred CCHHHHHHHHHHcCCeEEEE-cCChH------HHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHHH
Confidence 57889999999988866554 77785 566667778887654322222224444432222222223344445555
Q ss_pred HHHHHH
Q 011761 367 LEEIRN 372 (478)
Q Consensus 367 l~~i~~ 372 (478)
|..+|.
T Consensus 164 i~~lrk 169 (227)
T KOG1615|consen 164 IALLRK 169 (227)
T ss_pred HHHHHh
Confidence 555544
No 93
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=24.08 E-value=1.6e+02 Score=26.84 Aligned_cols=41 Identities=12% Similarity=0.222 Sum_probs=22.8
Q ss_pred hcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhc
Q 011761 259 VFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF 299 (478)
Q Consensus 259 ~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~ 299 (478)
.++||+|||+.|..=..........--.+.+.++++.+++.
T Consensus 65 ~~~pd~Vii~~G~ND~~~~~~~~~~~~~~~l~~li~~i~~~ 105 (188)
T cd01827 65 AFNPNIVIIKLGTNDAKPQNWKYKDDFKKDYETMIDSFQAL 105 (188)
T ss_pred ccCCCEEEEEcccCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 47999999999975433211000000123455677777654
No 94
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=23.95 E-value=94 Score=26.42 Aligned_cols=15 Identities=53% Similarity=0.930 Sum_probs=14.0
Q ss_pred CCcEEEEeccccCCc
Q 011761 175 HERVLYVDIDIHHGD 189 (478)
Q Consensus 175 ~~RVl~IDiDvHHGD 189 (478)
..+|++||.|.++++
T Consensus 29 ~~~~~l~d~d~~~~~ 43 (106)
T cd03111 29 GRRVLLVDLDLQFGD 43 (106)
T ss_pred CCcEEEEECCCCCCC
Confidence 789999999999987
No 95
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=23.26 E-value=2.4e+02 Score=27.93 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeC
Q 011761 246 HYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGG 308 (478)
Q Consensus 246 ~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~lgg 308 (478)
..+++.+|..+ .+.+||+|| .+| |...+. ... +.+.|..+.+.+..+++|+.++.|
T Consensus 26 ~~~l~~~i~~i-~~~~~d~vv-~~G-Dlv~~~---~~~-~~~~~~~~~~~l~~l~~p~~~v~G 81 (267)
T cd07396 26 LEKLEEAVEEW-NRESLDFVV-QLG-DIIDGD---NAR-AEEALDAVLAILDRLKGPVHHVLG 81 (267)
T ss_pred HHHHHHHHHHH-HcCCCCEEE-ECC-CeecCC---Cch-HHHHHHHHHHHHHhcCCCEEEecC
Confidence 35666767654 455799855 444 333211 111 446677788888888999988875
No 96
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=23.25 E-value=2.8e+02 Score=29.39 Aligned_cols=69 Identities=10% Similarity=0.156 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcCCCEEEEecC-CCCCCCCCCCCcccCHHhHHHHHHHHH-hcCCCEEEEeCCCCCCcchhhhHHHHHhh
Q 011761 249 FKPIIGKVMEVFRPGAVVLQCG-ADSLSGDRLGCFNLSIKGHAECVKFMR-SFNVPLLLLGGGGYTIRNVARCWCYETGV 326 (478)
Q Consensus 249 f~~iv~pv~~~f~Pd~IVvqaG-~D~l~gDpLG~~nLs~~g~~~~~~~l~-~~~~pll~lggGGY~~~~var~w~~~t~~ 326 (478)
++..|..+.++|+|++|+|... .-...||.+ ..+++.++ ..+.|++.+--.||.. +....|......
T Consensus 75 L~~aI~ei~~~~~P~~I~V~sTCv~e~IGDDi----------~~v~~~~~~~~~~pvi~v~t~gf~g-~~~~G~~~~~~a 143 (396)
T cd01979 75 LDRVVTQIKRDRNPSVIFLIGSCTTEVIKMDL----------EGAAPRLSAEIGVPILVASASGLDY-TFTQGEDTVLAA 143 (396)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCHHHHHhcCH----------HHHHHHHhhcCCCcEEEeeCCCccc-cHHHHHHHHHHH
Confidence 4456778889999998877654 344444432 22444443 3477888777777754 333343333333
Q ss_pred Hh
Q 011761 327 AL 328 (478)
Q Consensus 327 ll 328 (478)
++
T Consensus 144 lv 145 (396)
T cd01979 144 LV 145 (396)
T ss_pred Hh
Confidence 33
No 97
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=23.19 E-value=1.6e+02 Score=32.30 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=26.2
Q ss_pred HHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCC
Q 011761 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGY 311 (478)
Q Consensus 255 pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~lggGGY 311 (478)
..+.+++||+|.+++ +..+.....++++.+++..-.+.++.||..
T Consensus 57 ~~l~~~~pdvVgis~------------~t~~~~~a~~~~~~~k~~~P~~~iV~GG~h 101 (497)
T TIGR02026 57 ERLRAHCPDLVLITA------------ITPAIYIACETLKFARERLPNAIIVLGGIH 101 (497)
T ss_pred HHHHhcCcCEEEEec------------CcccHHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 456789999999874 112333344567777765433444445543
No 98
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=22.86 E-value=1.3e+02 Score=28.77 Aligned_cols=45 Identities=27% Similarity=0.541 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHH----HHHHHHhc--CCCEEEEe
Q 011761 252 IIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAE----CVKFMRSF--NVPLLLLG 307 (478)
Q Consensus 252 iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~----~~~~l~~~--~~pll~lg 307 (478)
.+...+.+..++++++.||.. .+.+.+.+ .++.+++. ..|||++-
T Consensus 50 ~~a~~ia~~~a~~~~ld~~~N-----------~~~~~~~~~~~~fv~~iR~~hP~tPIllv~ 100 (178)
T PF14606_consen 50 EVADLIAEIDADLIVLDCGPN-----------MSPEEFRERLDGFVKTIREAHPDTPILLVS 100 (178)
T ss_dssp HHHHHHHHS--SEEEEEESHH-----------CCTTTHHHHHHHHHHHHHTT-SSS-EEEEE
T ss_pred HHHHHHhcCCCCEEEEEeecC-----------CCHHHHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 344556677899999999976 45555554 45555554 68999884
No 99
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=22.45 E-value=3.2e+02 Score=29.18 Aligned_cols=56 Identities=14% Similarity=0.271 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCC-CCCCCCCCCCcccCHHhHHHHHHHHH-hcCCCEEEEeCCCCCC
Q 011761 248 LFKPIIGKVMEVFRPGAVVLQCGA-DSLSGDRLGCFNLSIKGHAECVKFMR-SFNVPLLLLGGGGYTI 313 (478)
Q Consensus 248 ~f~~iv~pv~~~f~Pd~IVvqaG~-D~l~gDpLG~~nLs~~g~~~~~~~l~-~~~~pll~lggGGY~~ 313 (478)
-++..|..+++.|+|++|+|...+ -...||.+ ..+++.++ ..+.|++.+--.||..
T Consensus 71 ~L~~aI~~i~~~~~P~~I~V~tTC~se~IGDDi----------~~v~~~~~~~~~~pVi~v~tpgf~g 128 (407)
T TIGR01279 71 ELDRVVEQIKRDRNPSVIFLLSSCTPEVIKMDL----------EGLAERLSTNFGVPVLFAPASGLDY 128 (407)
T ss_pred HHHHHHHHHHhhcCCCEEEEECCchHHHHHhhH----------HHHHHHHHHhhCCCEEEeeCCCccc
Confidence 455677788899999999887653 23333322 22333333 2467777777777754
No 100
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=22.40 E-value=1.1e+02 Score=27.69 Aligned_cols=48 Identities=8% Similarity=0.081 Sum_probs=27.4
Q ss_pred HHhcCCCEEEEecCCCCCCCCCCCCcccCH----HhHHHHHHHHH--hcCCCEEEE
Q 011761 257 MEVFRPGAVVLQCGADSLSGDRLGCFNLSI----KGHAECVKFMR--SFNVPLLLL 306 (478)
Q Consensus 257 ~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~----~g~~~~~~~l~--~~~~pll~l 306 (478)
+...+||+|+|++|..=...... -..++ +.+.++++.++ .-+.+++++
T Consensus 57 ~~~~~~d~v~l~~G~ND~~~~~~--~~~~~~~~~~~l~~~v~~~~~~~~~~~ii~~ 110 (191)
T cd01834 57 VLPAKPDVVSIMFGINDSFRGFD--DPVGLEKFKTNLRRLIDRLKNKESAPRIVLV 110 (191)
T ss_pred cccCCCCEEEEEeecchHhhccc--ccccHHHHHHHHHHHHHHHHcccCCCcEEEE
Confidence 34578999999999744432110 02334 34556677774 235555554
No 101
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.15 E-value=3.7e+02 Score=26.64 Aligned_cols=63 Identities=11% Similarity=0.236 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHH---hHHHHHHHHHhcC-CCEEEEeCCCCCCcchh
Q 011761 244 SYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIK---GHAECVKFMRSFN-VPLLLLGGGGYTIRNVA 317 (478)
Q Consensus 244 ~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~---g~~~~~~~l~~~~-~pll~lggGGY~~~~va 317 (478)
+....|+.++. .+.+.+||+||++ ||=.-..+-+.. -+.+.++.+++.+ +|++++.| |.....
T Consensus 23 ~~~~~l~~l~~-~~~~~~~D~lli~-------GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~i~G---NHD~~~ 89 (253)
T TIGR00619 23 EQKAFLDDLLE-FAKAEQIDALLVA-------GDVFDTANPPAEAQELFNAFFRNLSDANPIPIVVISG---NHDSAQ 89 (253)
T ss_pred HHHHHHHHHHH-HHHHcCCCEEEEC-------CccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEcc---CCCChh
Confidence 34556766665 5667899998763 333222222222 2334555555556 88888755 554433
No 102
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=22.05 E-value=2.4e+02 Score=27.15 Aligned_cols=63 Identities=14% Similarity=0.249 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCCCCCCCCccc---CHHhHHHHHHHHHhcCCCEEEEeCCCCCC
Q 011761 251 PIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNL---SIKGHAECVKFMRSFNVPLLLLGGGGYTI 313 (478)
Q Consensus 251 ~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nL---s~~g~~~~~~~l~~~~~pll~lggGGY~~ 313 (478)
+.+.+.+.++.-|++++--=-=.-..|-+-++.- --..+..|.++|..++.|.+++-|-||-.
T Consensus 104 P~~~~~i~~~r~DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l~~~L~~~~~~~v~i~~~~y~e 169 (187)
T COG3172 104 PFLQALIAEYRFDLTLLLEPNTPWVADGLRSLGSSVQRQEFQNLLEQMLEENNIPFVVIEGEDYLE 169 (187)
T ss_pred chHHHHHhhcccceEEEcCCCCceeCCCccccccHhHHHHHHHHHHHHHHHhCCcEEEEcCCCHHH
Confidence 4467888899999999876544444443333322 22345678899999999999886668964
No 103
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=21.59 E-value=1.6e+02 Score=25.48 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCC
Q 011761 248 LFKPIIGKVMEVFRPGAVVLQCGADS 273 (478)
Q Consensus 248 ~f~~iv~pv~~~f~Pd~IVvqaG~D~ 273 (478)
-+...|..++++++|++|+.-...|.
T Consensus 87 ~~~~~l~~~i~~~~p~~V~t~~~~~~ 112 (128)
T PF02585_consen 87 ELVRDLEDLIREFRPDVVFTPDPDDG 112 (128)
T ss_dssp HHHHHHHHHHHHH-ESEEEEE-STTS
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 34455677889999999998887776
No 104
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=21.54 E-value=1.3e+02 Score=30.26 Aligned_cols=46 Identities=17% Similarity=0.389 Sum_probs=29.9
Q ss_pred CCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCC
Q 011761 261 RPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTI 313 (478)
Q Consensus 261 ~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~lggGGY~~ 313 (478)
.+|+||+.- |.-+.++.|++.|+. .++++.+.++.+.+..+| ||..
T Consensus 83 ~~Dliil~G--d~Q~~~~~gqyel~~----~~Ld~a~e~g~~~IyTLG-Gy~v 128 (258)
T COG2047 83 ERDLIILVG--DTQATSSEGQYELTG----KILDIAKEFGARMIYTLG-GYGV 128 (258)
T ss_pred CCcEEEEec--cccccCcchhHHHHH----HHHHHHHHcCCcEEEEec-Cccc
Confidence 347777643 555566777777753 366777788888887774 4653
No 105
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=21.48 E-value=99 Score=28.43 Aligned_cols=24 Identities=17% Similarity=0.444 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEE
Q 011761 243 ESYHYLFKPIIGKVMEVFRPGAVV 266 (478)
Q Consensus 243 ~~y~~~f~~iv~pv~~~f~Pd~IV 266 (478)
..+...+.+-+.+.+++++||+||
T Consensus 71 ~~~~~~~~~~l~~~l~~~~PD~II 94 (169)
T PF06925_consen 71 SALSRLFARRLIRLLREFQPDLII 94 (169)
T ss_pred HHHHHHHHHHHHHHHhhcCCCEEE
Confidence 345566667778889999999998
No 106
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=21.37 E-value=49 Score=31.29 Aligned_cols=47 Identities=32% Similarity=0.422 Sum_probs=36.5
Q ss_pred cCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCcchhhhH
Q 011761 269 CGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCW 320 (478)
Q Consensus 269 aG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~lggGGY~~~~var~w 320 (478)
+|+|...-| |+|++...++++.++..+.++.+...||-|+.|++...
T Consensus 99 ~g~d~I~lD-----~~~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya 145 (169)
T PF01729_consen 99 AGADIIMLD-----NMSPEDLKEAVEELRELNPRVKIEASGGITLENIAEYA 145 (169)
T ss_dssp TT-SEEEEE-----S-CHHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHH
T ss_pred hCCCEEEec-----CcCHHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHH
Confidence 566666566 34788889999999888777888889999999998764
No 107
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=21.36 E-value=1.3e+02 Score=30.96 Aligned_cols=67 Identities=15% Similarity=0.218 Sum_probs=50.4
Q ss_pred HHHHHHhcCCCEEEEecCC---CCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEE-------eCC--CCCCcchhhh
Q 011761 253 IGKVMEVFRPGAVVLQCGA---DSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLL-------GGG--GYTIRNVARC 319 (478)
Q Consensus 253 v~pv~~~f~Pd~IVvqaG~---D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~l-------ggG--GY~~~~var~ 319 (478)
+.+++.+.+||+||-.|.+ |....+|.-.|.+...|-..+.+..+..+.+++-+ |.+ .|......-+
T Consensus 42 v~~~i~~~~PDvVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDyVFDG~~~~~Y~E~D~~~P 120 (281)
T COG1091 42 VLEVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGARLVHISTDYVFDGEKGGPYKETDTPNP 120 (281)
T ss_pred HHHHHHhhCCCEEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeecceEecCCCCCCCCCCCCCCC
Confidence 4567778899999999874 77777777778888888888888888888887633 444 3877655554
No 108
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=21.32 E-value=1.5e+02 Score=28.98 Aligned_cols=53 Identities=11% Similarity=0.102 Sum_probs=34.1
Q ss_pred HHHHHHhcCCCEEEEecCCCC----CCCCCCCCcccCHHhHHHHHHHHHhcCCC-EEE
Q 011761 253 IGKVMEVFRPGAVVLQCGADS----LSGDRLGCFNLSIKGHAECVKFMRSFNVP-LLL 305 (478)
Q Consensus 253 v~pv~~~f~Pd~IVvqaG~D~----l~gDpLG~~nLs~~g~~~~~~~l~~~~~p-ll~ 305 (478)
+..+++.++||+||-.||.-. ...+|...+.....+-..+++.++..+++ ++.
T Consensus 41 l~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~ 98 (306)
T PLN02725 41 VEAFFAKEKPTYVILAAAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLF 98 (306)
T ss_pred HHHHHhccCCCEEEEeeeeecccchhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEE
Confidence 334456689999999998632 23455444555555666778888877765 443
No 109
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=21.28 E-value=2.9e+02 Score=25.02 Aligned_cols=46 Identities=11% Similarity=0.065 Sum_probs=30.6
Q ss_pred HHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCC-CEEEEeCCCC
Q 011761 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNV-PLLLLGGGGY 311 (478)
Q Consensus 255 pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~-pll~lggGGY 311 (478)
..+.+.+||+|.+|+= +.-+.....++++.|++.+. .+.++.||+-
T Consensus 44 ~aa~~~~adiVglS~L-----------~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~ 90 (128)
T cd02072 44 DAAIETDADAILVSSL-----------YGHGEIDCKGLREKCDEAGLKDILLYVGGNL 90 (128)
T ss_pred HHHHHcCCCEEEEecc-----------ccCCHHHHHHHHHHHHHCCCCCCeEEEECCC
Confidence 3456789999998751 12345566788889988765 4555556654
No 110
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=21.23 E-value=87 Score=30.97 Aligned_cols=16 Identities=13% Similarity=0.204 Sum_probs=13.4
Q ss_pred cCCcEEEEeccccCCc
Q 011761 174 QHERVLYVDIDIHHGD 189 (478)
Q Consensus 174 ~~~RVl~IDiDvHHGD 189 (478)
..+|||+||+|.++..
T Consensus 30 ~G~rvLliD~Dpq~~~ 45 (275)
T PRK13233 30 HDKKVFIHGCDPKADS 45 (275)
T ss_pred cCCeEEEeccCcCcCh
Confidence 4789999999998654
No 111
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.93 E-value=78 Score=32.58 Aligned_cols=47 Identities=21% Similarity=0.315 Sum_probs=35.1
Q ss_pred cCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCcchhhhH
Q 011761 269 CGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCW 320 (478)
Q Consensus 269 aG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~lggGGY~~~~var~w 320 (478)
+|+|...-| |++++...++++.++..+..+.+.--||=|..|++...
T Consensus 215 ~GaD~I~LD-----n~~~e~l~~av~~~~~~~~~i~leAsGGIt~~ni~~ya 261 (288)
T PRK07428 215 YGADIIMLD-----NMPVDLMQQAVQLIRQQNPRVKIEASGNITLETIRAVA 261 (288)
T ss_pred cCCCEEEEC-----CCCHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHH
Confidence 444444444 78889999999999876555666667999999988775
No 112
>cd05780 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease domain of Pyrococcus kodakaraensis Kod1 and similar archaeal family-B DNA polymerases. The 3'-5' exonuclease domain of archaeal family-B DNA polymerases with similarity to Pyrococcus kodakaraensis Kod1, including polymerases from Desulfurococcus (D. Tok Pol) and Thermococcus gorgonarius (Tgo Pol). Kod1, D. Tok Pol, and Tgo Pol are thermostable enzymes that exhibit both polymerase and 3'-5' exonuclease activities. They are family-B DNA polymerases. Their amino termini harbor a DEDDy-type DnaQ-like 3'-5' exonuclease domain that contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Members of this subfamily show
Probab=20.91 E-value=5.7e+02 Score=24.07 Aligned_cols=30 Identities=23% Similarity=0.511 Sum_probs=22.1
Q ss_pred cEEEEeccccCCcccccccccCCceEEeecCC
Q 011761 177 RVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHK 208 (478)
Q Consensus 177 RVl~IDiDvHHGDGtqeaF~~d~~VltiSiH~ 208 (478)
||+.+||-+..-+|..+ ...+.|+.||+..
T Consensus 4 ~i~~fDIEt~~~~g~p~--~~~d~Ii~Is~~~ 33 (195)
T cd05780 4 KILSFDIEVLNHEGEPN--PEKDPIIMISFAD 33 (195)
T ss_pred eEEEEEEEecCCCCCCC--CCCCcEEEEEEec
Confidence 89999999986556432 2457899999754
No 113
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=20.88 E-value=96 Score=37.37 Aligned_cols=14 Identities=14% Similarity=0.012 Sum_probs=11.8
Q ss_pred HhcCCCEEEEecCC
Q 011761 258 EVFRPGAVVLQCGA 271 (478)
Q Consensus 258 ~~f~Pd~IVvqaG~ 271 (478)
.+.++|+|||+.|+
T Consensus 494 ~~~gyDAV~IATGA 507 (1028)
T PRK06567 494 FDLGFDHIAFCIGA 507 (1028)
T ss_pred hhcCCCEEEEeCCC
Confidence 34678999999997
No 114
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=20.86 E-value=3.4e+02 Score=28.08 Aligned_cols=100 Identities=25% Similarity=0.377 Sum_probs=58.9
Q ss_pred HHHHHHhcC-C-cEEEEeccccCCcccccccccCCceEEeecCCCCCCCCCCCCCCcccCCCCCccEEecCCCCCCChHH
Q 011761 167 AILELLKQH-E-RVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDES 244 (478)
Q Consensus 167 Ai~~ll~~~-~-RVl~IDiDvHHGDGtqeaF~~d~~VltiSiH~~~~ffPgTG~~~eiG~g~G~~~~vNVPL~~G~~D~~ 244 (478)
++.++.+.. + ||.+|+-|-=.|.|..++|... +...| ++ -.+..+..++..|
T Consensus 138 ~~~~l~~~~~~k~v~ii~~~~~yg~~~~~~~~~~-------l~~~G----------------~~-~~~~~~~~~~~~~-- 191 (366)
T COG0683 138 AADYLVKKGGKKRVAIIGDDYAYGEGLADAFKAA-------LKALG----------------GE-VVVEEVYAPGDTD-- 191 (366)
T ss_pred HHHHHHHhcCCcEEEEEeCCCCcchhHHHHHHHH-------HHhCC----------------Ce-EEEEEeeCCCCCC--
Confidence 445666554 4 8999999999999999998642 11111 11 1122333344444
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCC
Q 011761 245 YHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYT 312 (478)
Q Consensus 245 y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~lggGGY~ 312 (478)
|..+|.+ +...+||+|++..-. +.. ..+++.++..+..-.+++++|-.
T Consensus 192 ----~~~~v~~-i~~~~~d~v~~~~~~-----~~~----------~~~~r~~~~~G~~~~~~~~~~~~ 239 (366)
T COG0683 192 ----FSALVAK-IKAAGPDAVLVGGYG-----PDA----------ALFLRQAREQGLKAKLIGGDGAG 239 (366)
T ss_pred ----hHHHHHH-HHhcCCCEEEECCCC-----ccc----------hHHHHHHHHcCCCCccccccccC
Confidence 6667766 578999966654331 111 23778888877655544444443
No 115
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=20.78 E-value=1.4e+02 Score=24.31 Aligned_cols=18 Identities=11% Similarity=0.445 Sum_probs=13.3
Q ss_pred HHHhcCCCEEEEeCCCCC
Q 011761 295 FMRSFNVPLLLLGGGGYT 312 (478)
Q Consensus 295 ~l~~~~~pll~lggGGY~ 312 (478)
.++.++.+=+.++.|||.
T Consensus 91 ~l~~~g~~~v~~l~GG~~ 108 (113)
T PF00581_consen 91 ILKKLGFKNVYILDGGFE 108 (113)
T ss_dssp HHHHTTTSSEEEETTHHH
T ss_pred HHHHcCCCCEEEecChHH
Confidence 466677766677899986
No 116
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=20.72 E-value=4.2e+02 Score=28.74 Aligned_cols=118 Identities=17% Similarity=0.330 Sum_probs=66.6
Q ss_pred cccCCccccccccc---------CCceEEeecCCCCC-CCCCC-CCCC-------cccCCCCCccEEecCCCCCCChHHH
Q 011761 184 DIHHGDGVEEAFYT---------TDRVMTVSFHKFGD-YFPGT-GDIR-------DIGYSKGKFYSLNVPLDDGIDDESY 245 (478)
Q Consensus 184 DvHHGDGtqeaF~~---------d~~VltiSiH~~~~-ffPgT-G~~~-------eiG~g~G~~~~vNVPL~~G~~D~~y 245 (478)
-.|+|-|-|.+++. -.++|++- .+ ||--| |... ++=...+..+.+|.|.+..++=+
T Consensus 99 PthQGRgAE~Il~~i~ik~~~~~pg~~~~~~----sN~~FdTTr~h~~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~-- 172 (471)
T COG3033 99 PTHQGRGAENILIPILIKKGEQEPGSKMVAF----SNYHFDTTRGHIQINGATPRNVYVDEAFDTEVKYPFKGNFDLE-- 172 (471)
T ss_pred eccCCccHHHHHHHHHhhhccccCCcccccc----ccceecchhHHHHhcCCccccccccccccccccCCCCCccCHH--
Confidence 48999999988764 11233221 12 34333 2222 22222333445566665555432
Q ss_pred HHHHHHHHHHHHHhcCCC---EEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEE-------------eCC
Q 011761 246 HYLFKPIIGKVMEVFRPG---AVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLL-------------GGG 309 (478)
Q Consensus 246 ~~~f~~iv~pv~~~f~Pd---~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~l-------------ggG 309 (478)
- +.+++.+-.+| .|++.-=..+..|-| +|++-..++.++.+..++|+++= =+-
T Consensus 173 --k----Le~lidevG~~nvp~I~~tiT~NsagGQp-----VSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~ 241 (471)
T COG3033 173 --K----LERLIDEVGADNVPYIVLTITNNSAGGQP-----VSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREP 241 (471)
T ss_pred --H----HHHHHHHhCcccCcEEEEEEeccccCCCc-----chHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCc
Confidence 2 33344444444 666666666776666 66666788888888889998763 256
Q ss_pred CCCCcchhh
Q 011761 310 GYTIRNVAR 318 (478)
Q Consensus 310 GY~~~~var 318 (478)
||...+++.
T Consensus 242 gYrd~sI~~ 250 (471)
T COG3033 242 GYRDWSIEE 250 (471)
T ss_pred ccccccHHH
Confidence 777655543
No 117
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.70 E-value=1.1e+02 Score=29.76 Aligned_cols=63 Identities=25% Similarity=0.442 Sum_probs=41.7
Q ss_pred CCCCCCCCCCcccCC-CCCccEEecCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCC-CCCC
Q 011761 211 DYFPGTGDIRDIGYS-KGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGA-DSLS 275 (478)
Q Consensus 211 ~ffPgTG~~~eiG~g-~G~~~~vNVPL~~G~~D~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~-D~l~ 275 (478)
+|=|||-++.-.|.- .|..| +-|.|-.--+.++-+.+++.++. +++.|.|+-+||++|+ |+++
T Consensus 63 pYKPGT~slAalGaav~GaDY-iKVGLYg~kn~~eA~e~m~~vvr-AVkd~d~~k~VVAaGYaDa~R 127 (235)
T COG1891 63 PYKPGTASLAALGAAVAGADY-IKVGLYGTKNEEEALEVMKNVVR-AVKDFDPSKKVVAAGYADAHR 127 (235)
T ss_pred CCCCchHHHHHHHhHhhCCce-EEEeecccccHHHHHHHHHHHHH-HHhccCCCceEEeccccchhh
Confidence 366888666555542 23333 45555544455666777777774 6799999999999995 4443
No 118
>PF02701 zf-Dof: Dof domain, zinc finger; InterPro: IPR003851 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry consists of proteins containing a Dof domain, which is a zinc finger DNA-binding domain that shows resemblance to the Cys2 zinc finger, although it has a longer putative loop where an extra Cys residue is conserved []. AOBP, a DNA-binding protein in pumpkin (Cucurbita maxima), contains a 52 amino acid Dof domain, which is highly conserved in several DNA-binding proteins of higher plants. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent
Probab=20.61 E-value=37 Score=27.21 Aligned_cols=11 Identities=45% Similarity=0.990 Sum_probs=8.1
Q ss_pred ccceeechHHH
Q 011761 156 SGFCYVNDIVL 166 (478)
Q Consensus 156 sGFCy~Ndiai 166 (478)
--|||+||--+
T Consensus 16 TKFcYyNNy~~ 26 (63)
T PF02701_consen 16 TKFCYYNNYNL 26 (63)
T ss_pred CEEEeecCCCC
Confidence 46999998643
No 119
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=20.41 E-value=94 Score=27.96 Aligned_cols=20 Identities=20% Similarity=0.316 Sum_probs=15.5
Q ss_pred HHHhcCCcEEEEeccccCCc
Q 011761 170 ELLKQHERVLYVDIDIHHGD 189 (478)
Q Consensus 170 ~ll~~~~RVl~IDiDvHHGD 189 (478)
.|.+...||++||.|...|+
T Consensus 23 ~l~~~g~~vllvD~D~~~~~ 42 (179)
T cd02036 23 ALAQLGYKVVLIDADLGLRN 42 (179)
T ss_pred HHHhCCCeEEEEeCCCCCCC
Confidence 34456789999999998665
No 120
>PF06866 DUF1256: Protein of unknown function (DUF1256); InterPro: IPR009665 This family consists of several uncharacterised bacterial proteins, which seem to be specific to the orders Clostridia and Bacillales. Family members are typically around 180 residues in length. The function of this family is unknown.
Probab=20.32 E-value=2e+02 Score=27.31 Aligned_cols=40 Identities=23% Similarity=0.275 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCC
Q 011761 242 DESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGC 281 (478)
Q Consensus 242 D~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~ 281 (478)
|..-...|...+...+....-++||++-|.|-..||-||-
T Consensus 5 ~~~a~~~l~~~L~~~~~~~~~~iv~lCIGTDRstGDsLGP 44 (163)
T PF06866_consen 5 DKNAPEKLANFLYSLIPKHNREIVFLCIGTDRSTGDSLGP 44 (163)
T ss_pred CHHHHHHHHHHHHHHHhhcCCCEEEEEECCCCCccccccc
Confidence 3333334444454555454778999999999999998884
Done!