Query 011761
Match_columns 478
No_of_seqs 300 out of 1605
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 14:47:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011761.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011761hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a69_A Histone deacetylase 3,; 100.0 3E-114 1E-118 892.9 37.9 373 16-388 2-376 (376)
2 3max_A HD2, histone deacetylas 100.0 7E-113 2E-117 879.3 37.2 367 15-381 1-367 (367)
3 3ew8_A HD8, histone deacetylas 100.0 1E-109 5E-114 859.0 32.3 370 13-385 10-380 (388)
4 1c3p_A Protein (HDLP (histone 100.0 5.3E-90 1.8E-94 713.2 28.4 319 17-338 2-324 (375)
5 1zz1_A Histone deacetylase-lik 100.0 9.2E-87 3.1E-91 687.7 30.4 315 18-343 2-343 (369)
6 2vqm_A HD4, histone deacetylas 100.0 3.6E-86 1.2E-90 692.4 23.4 364 15-394 6-400 (413)
7 3q9b_A Acetylpolyamine amidohy 100.0 1.2E-83 4E-88 656.6 27.0 304 21-329 3-341 (341)
8 3men_A Acetylpolyamine aminohy 100.0 5.3E-83 1.8E-87 655.4 28.1 305 19-329 22-359 (362)
9 2pqp_A HD7A, histone deacetyla 100.0 2.7E-82 9.2E-87 659.5 27.3 352 17-384 36-419 (421)
10 4hf7_A Putative acylhydrolase; 81.2 1.5 5.1E-05 39.9 4.7 70 232-306 54-124 (209)
11 3ced_A Methionine import ATP-b 71.5 1.5 5.1E-05 36.3 1.6 57 250-306 34-95 (98)
12 1ivn_A Thioesterase I; hydrola 63.1 15 0.00053 32.0 6.7 46 255-306 56-105 (190)
13 4h08_A Putative hydrolase; GDS 62.2 21 0.0007 31.5 7.4 64 231-306 48-117 (200)
14 3mil_A Isoamyl acetate-hydroly 61.6 17 0.00057 32.6 6.8 70 231-307 46-120 (240)
15 3p94_A GDSL-like lipase; serin 58.4 8.4 0.00029 33.7 4.1 49 256-307 69-121 (204)
16 2qsw_A Methionine import ATP-b 57.4 2.4 8.3E-05 34.9 0.3 56 251-306 38-97 (100)
17 3bzw_A Putative lipase; protei 54.1 15 0.0005 34.6 5.3 37 244-282 73-110 (274)
18 3d2m_A Putative acetylglutamat 53.1 15 0.00052 37.8 5.6 70 234-311 15-85 (456)
19 3hp4_A GDSL-esterase; psychrot 52.9 14 0.00046 32.0 4.5 64 232-306 42-109 (185)
20 3dhx_A Methionine import ATP-b 52.4 4.6 0.00016 33.7 1.2 56 251-306 36-95 (106)
21 1yzf_A Lipase/acylhydrolase; s 50.7 23 0.00078 30.3 5.6 65 232-307 43-111 (195)
22 1es9_A PAF-AH, platelet-activa 49.6 13 0.00043 33.8 3.9 43 257-307 89-137 (232)
23 2qrr_A Methionine import ATP-b 49.2 4.5 0.00015 33.3 0.6 57 250-306 37-97 (101)
24 3dci_A Arylesterase; SGNH_hydr 47.5 35 0.0012 31.0 6.5 48 255-306 94-153 (232)
25 2q0q_A ARYL esterase; SGNH hyd 47.4 21 0.00073 31.4 5.0 49 255-307 76-138 (216)
26 2vpt_A Lipolytic enzyme; ester 45.1 17 0.0006 32.5 4.0 58 241-306 67-126 (215)
27 3rjt_A Lipolytic protein G-D-S 43.8 6.9 0.00024 34.4 1.0 52 256-307 78-137 (216)
28 1uf3_A Hypothetical protein TT 41.5 67 0.0023 28.3 7.4 51 249-308 21-71 (228)
29 2o14_A Hypothetical protein YX 41.0 29 0.001 34.9 5.3 69 231-306 202-275 (375)
30 2buf_A Acetylglutamate kinase; 39.0 69 0.0023 31.1 7.5 63 243-312 8-70 (300)
31 2q8u_A Exonuclease, putative; 38.3 57 0.002 31.7 6.8 58 243-308 44-104 (336)
32 3av0_A DNA double-strand break 37.5 61 0.0021 32.3 7.1 58 243-308 43-103 (386)
33 1ii7_A MRE11 nuclease; RAD50, 36.1 1E+02 0.0035 29.9 8.3 58 243-308 23-83 (333)
34 2ap9_A NAG kinase, acetylgluta 35.3 39 0.0013 32.8 5.0 66 240-312 4-69 (299)
35 3skv_A SSFX3; jelly roll, GDSL 33.3 40 0.0014 34.3 4.9 53 253-307 236-290 (385)
36 1fxw_F Alpha2, platelet-activa 32.0 32 0.0011 31.1 3.6 42 257-306 90-137 (229)
37 3aek_B Light-independent proto 31.5 54 0.0018 34.7 5.7 56 248-314 72-128 (525)
38 4fva_A 5'-tyrosyl-DNA phosphod 30.2 50 0.0017 29.4 4.5 36 231-270 18-53 (256)
39 1k7c_A Rhamnogalacturonan acet 27.7 1.4E+02 0.0047 27.1 7.2 40 232-274 36-76 (233)
40 3dff_A Teicoplanin pseudoaglyc 27.0 65 0.0022 31.0 5.0 31 245-275 132-162 (273)
41 4f1h_A Tyrosyl-DNA phosphodies 26.4 66 0.0022 27.9 4.5 17 253-269 26-42 (250)
42 3dc7_A Putative uncharacterize 26.4 41 0.0014 30.2 3.2 48 260-307 81-136 (232)
43 3dfi_A Pseudoaglycone deacetyl 25.8 75 0.0026 30.4 5.1 32 245-276 129-160 (270)
44 2rd5_A Acetylglutamate kinase- 25.5 39 0.0013 32.8 3.1 63 242-311 17-79 (298)
45 4gz1_A Tyrosyl-DNA phosphodies 25.2 70 0.0024 28.3 4.5 17 253-269 32-48 (256)
46 3t1i_A Double-strand break rep 25.0 1.4E+02 0.0049 30.8 7.4 47 243-297 54-100 (431)
47 3ea0_A ATPase, para family; al 25.0 36 0.0012 30.9 2.6 21 171-191 29-50 (245)
48 3tho_B Exonuclease, putative; 24.9 1.2E+02 0.0041 30.2 6.7 57 243-308 26-86 (379)
49 1y80_A Predicted cobalamin bin 24.4 1.1E+02 0.0038 27.7 5.9 47 255-312 133-182 (210)
50 2xdq_B Light-independent proto 24.2 67 0.0023 33.7 4.8 55 251-315 78-134 (511)
51 1g3q_A MIND ATPase, cell divis 24.2 59 0.002 29.3 3.9 19 171-189 27-45 (237)
52 2bty_A Acetylglutamate kinase; 23.9 68 0.0023 30.7 4.4 62 244-312 4-65 (282)
53 2whl_A Beta-mannanase, baman5; 23.5 2.4E+02 0.0081 26.6 8.2 65 244-313 94-163 (294)
54 3jug_A Beta-mannanase; TIM-bar 22.9 2.3E+02 0.0078 28.1 8.2 65 244-313 117-186 (345)
55 3q9l_A Septum site-determining 22.4 66 0.0023 29.3 3.9 19 171-189 27-45 (260)
56 2xdq_A Light-independent proto 21.6 1.5E+02 0.0051 30.3 6.7 69 249-328 85-155 (460)
57 1vjg_A Putative lipase from th 21.0 44 0.0015 29.7 2.2 46 260-307 87-136 (218)
58 2jjx_A Uridylate kinase, UMP k 20.9 1.1E+02 0.0038 28.8 5.3 50 261-312 11-63 (255)
59 2wao_A Endoglucanase E; plant 20.9 50 0.0017 32.2 2.8 48 258-307 210-260 (341)
60 1hyq_A MIND, cell division inh 20.7 76 0.0026 29.2 3.9 17 173-189 29-45 (263)
61 2yxb_A Coenzyme B12-dependent 20.7 98 0.0034 27.2 4.5 35 255-300 63-97 (161)
62 4fbw_A DNA repair protein RAD3 20.0 2.3E+02 0.0078 29.1 7.7 48 243-298 35-82 (417)
No 1
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=100.00 E-value=3e-114 Score=892.91 Aligned_cols=373 Identities=62% Similarity=1.215 Sum_probs=356.4
Q ss_pred CCeEEEEEcCCCCCCCCCCCCCCCchHHHHHHHHHHHcCCCCCceEeCCCCCCHHHHhccChHHHHHHHHhcCchhhHHH
Q 011761 16 KRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQ 95 (478)
Q Consensus 16 ~~~v~~~yd~~~~~~~~g~~HP~~p~R~~~i~~ll~~~gL~~~~~i~~p~~At~eeL~~~Hs~~Yv~~L~~~~~~~~~~~ 95 (478)
|+||+|+|||++++|.+|++|||+|.|+++++++|.++||++.+++++|++||.++|++||+++||++|++.++....+.
T Consensus 2 ~~~~~~~y~~~~~~~~~g~~HPe~p~Rl~~i~~~l~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~~ 81 (376)
T 4a69_A 2 AKTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQGF 81 (376)
T ss_dssp CCCEEEECCTTTTCCCCCTTCSCCTHHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHCCTTTGGGG
T ss_pred CCeEEEEEChHHhCcCCCCCCCcCHHHHHHHHHHHHhcCCCCCceEeCCCCCCHHHHHHhCCHHHHHHHHHhCcccchhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999887655443
Q ss_pred HHhhhhcccCCCCcCCcchHHHHHHhhhHHHHHHHHhhcCcccEEEeCCCCCCCcccCCCccceeechHHHHHHHHHhcC
Q 011761 96 LRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQH 175 (478)
Q Consensus 96 ~~~~~~~~~~~Dcp~f~gl~~~~~~~aGgsl~aa~~l~~g~~~iAin~~gG~HHA~~~~asGFCy~NdiaiAi~~ll~~~ 175 (478)
.+.+.+|+++.|||+|+++|++|+++|||+|.||++|++|++++||||+||+|||++++|+||||||||||||++|++.+
T Consensus 82 ~~~~~~~~l~~Dtpv~~~~~e~a~~aaGgtl~Aa~~v~~g~~~~A~~~~gG~HHA~~~~a~GFC~~NdvAiAa~~l~~~~ 161 (376)
T 4a69_A 82 TKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYH 161 (376)
T ss_dssp HHHHHHHTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTTTC
T ss_pred hhhhceeccCCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCcceeeeCCCCCCcCCcCCCCcchhhhHHHHHHHHHHHhC
Confidence 44566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeccccCCcccccccccCCceEEeecCCCCC-CCCCCCCCCcccCCCCCccEEecCCCCCCChHHHHHHHHHHHH
Q 011761 176 ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGD-YFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIG 254 (478)
Q Consensus 176 ~RVl~IDiDvHHGDGtqeaF~~d~~VltiSiH~~~~-ffPgTG~~~eiG~g~G~~~~vNVPL~~G~~D~~y~~~f~~iv~ 254 (478)
+||||||||||||||||++||+||+|||+|||+++. ||||||..+|+|.|+|++|++||||++|++|++|+.+|+++|.
T Consensus 162 ~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~fPgtG~~~e~G~g~g~g~~vNvPL~~G~~D~~yl~~~~~~l~ 241 (376)
T 4a69_A 162 PRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVIN 241 (376)
T ss_dssp SCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECSTTCTTCCCCTTCCCCGGGTTSEEEEEECTTCBHHHHHHHHHHHHH
T ss_pred CcEEEEeccCCCCcchhhHhcCCCCEEEEecccCCCcCCCCCCCccccCCCCCCceeEeeecCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999965 8999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCcchhhhHHHHHhhHhCCcCCC
Q 011761 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDD 334 (478)
Q Consensus 255 pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~lggGGY~~~~var~w~~~t~~llg~~~~~ 334 (478)
|++++|+||+||+|||||++.+||||+|+||++||++|+++++++++|+++++||||++++|+|||+++|++++|.++++
T Consensus 242 p~~~~f~Pd~IvvsaG~Da~~~DpLg~l~Lt~~g~~~~~~~l~~~~~p~v~v~eGGY~~~~var~w~~~~a~l~g~~~~~ 321 (376)
T 4a69_A 242 QVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISE 321 (376)
T ss_dssp HHHHHHCCSEEEEECCGGGBTTCSSCCCBBCHHHHHHHHHHHHTTCCCEEEECCCCCSHHHHHHHHHHHHHHHTTCCCCS
T ss_pred HHHHHhCCCEEEEeCcccCCCCCcccCeecCHHHHHHHHHHHHHcCCCEEEEECCCCChhHHHHHHHHHHHHhcCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccCCCCccccC-CCCCCCcCcHHHHHHHHHHHHHHhhcCCCCCCcc
Q 011761 335 KMPQHEYYEYFGPDYTLHVA-PSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQ 388 (478)
Q Consensus 335 ~iP~~~~~~~~~p~~~l~~~-~~~~~~~n~~~~l~~i~~~~~~~l~~l~~apsv~ 388 (478)
++|+++|++||+|+|+|++. +++|+|+|+++||++|+++|+|||++|+++||||
T Consensus 322 ~~P~~~~~~~~~p~~~l~~~~~~~~~~~n~~~~l~~~~~~~~~~l~~~~~~p~~~ 376 (376)
T 4a69_A 322 ELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQ 376 (376)
T ss_dssp BCCCCTTGGGGTTTCBSSCCCCCCSCCCCCHHHHHHHHHHHHHHHHTTC------
T ss_pred CCCCchHHHHhCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 99999999999999999998 8999999999999999999999999999999998
No 2
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=100.00 E-value=6.9e-113 Score=879.30 Aligned_cols=367 Identities=68% Similarity=1.279 Sum_probs=355.9
Q ss_pred CCCeEEEEEcCCCCCCCCCCCCCCCchHHHHHHHHHHHcCCCCCceEeCCCCCCHHHHhccChHHHHHHHHhcCchhhHH
Q 011761 15 VKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQD 94 (478)
Q Consensus 15 ~~~~v~~~yd~~~~~~~~g~~HP~~p~R~~~i~~ll~~~gL~~~~~i~~p~~At~eeL~~~Hs~~Yv~~L~~~~~~~~~~ 94 (478)
.|+||+|+|||++++|+||++|||+|+|+++++++|.++||++.+++++|++||.++|++|||++||++|++.+++...+
T Consensus 1 ~~~~v~~~y~~~~~~~~~g~~HPe~P~Rl~~i~~~L~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~ 80 (367)
T 3max_A 1 AKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMSE 80 (367)
T ss_dssp CCCCEEEECCGGGGGCCCCTTCSCCTHHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHCCGGGGGG
T ss_pred CCCeEEEEECccccCcCCCCCCCCCHHHHHHHHHHHHhcCCcccCeeeCCCCCCHHHHHhhCCHHHHHHHHHhCccccch
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999988765543
Q ss_pred HHHhhhhcccCCCCcCCcchHHHHHHhhhHHHHHHHHhhcCcccEEEeCCCCCCCcccCCCccceeechHHHHHHHHHhc
Q 011761 95 QLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQ 174 (478)
Q Consensus 95 ~~~~~~~~~~~~Dcp~f~gl~~~~~~~aGgsl~aa~~l~~g~~~iAin~~gG~HHA~~~~asGFCy~NdiaiAi~~ll~~ 174 (478)
..+.+.+|++++|||+|+++|++|+++|||+|.||+++++++.++||||+||+|||++++|+||||||||||||++|++.
T Consensus 81 ~~~~~~~~~l~~Dtp~~~~~~e~a~~aaGgsl~aa~~v~~~~~~~Ai~~pgG~HHA~~~~a~GFC~~NdvaiAa~~l~~~ 160 (367)
T 3max_A 81 YSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKY 160 (367)
T ss_dssp CHHHHHHTTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBCSCHHHHHHHHHTTT
T ss_pred hhhHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCcceEecCCCCCCcCCcCCCCCchhhhHHHHHHHHHHHc
Confidence 33456779999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcEEEEeccccCCcccccccccCCceEEeecCCCCCCCCCCCCCCcccCCCCCccEEecCCCCCCChHHHHHHHHHHHH
Q 011761 175 HERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIG 254 (478)
Q Consensus 175 ~~RVl~IDiDvHHGDGtqeaF~~d~~VltiSiH~~~~ffPgTG~~~eiG~g~G~~~~vNVPL~~G~~D~~y~~~f~~iv~ 254 (478)
++||||||||||||||||++||+||+|||+|||+++.||||||..+|+|.|+|++|++||||++|++|++|+.+|+++|.
T Consensus 161 ~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~fPgtg~~~e~G~g~g~g~~vNvPL~~g~~d~~y~~~~~~~~~ 240 (367)
T 3max_A 161 HQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPIIS 240 (367)
T ss_dssp CSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECSSCTTCCCCTTCCCCGGGTTCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCCchhhHHhcCCCCEEEEecccCCCCCCCCCCccccCCCCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCcchhhhHHHHHhhHhCCcCCC
Q 011761 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDD 334 (478)
Q Consensus 255 pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~lggGGY~~~~var~w~~~t~~llg~~~~~ 334 (478)
|++++|+||+||+|||||++.+||||+|+||++||.+|+++++++++|+++++||||++++|+|||+++|++++|.++|+
T Consensus 241 ~~~~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~g~~~~~~~~~~~~~p~v~~~eGGY~~~~var~wt~~ta~~~~~~i~~ 320 (367)
T 3max_A 241 KVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIPN 320 (367)
T ss_dssp HHHHHHCCSEEEEECCGGGBTTCSSCCCCBCHHHHHHHHHHHHTTCCCEEEECCCCCSHHHHHHHHHHHHHHHTTCCCCS
T ss_pred HHHHHhCCCEEEEECCccCcCCCCCCCeeeCHHHHHHHHHHHHhcCCCEEEEeCCCCChhHHHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccCCCCccccCCCCCCCcCcHHHHHHHHHHHHHHhhcC
Q 011761 335 KMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKL 381 (478)
Q Consensus 335 ~iP~~~~~~~~~p~~~l~~~~~~~~~~n~~~~l~~i~~~~~~~l~~l 381 (478)
++|+|+||+||||+|+|++.+++|+|+|+++||++|+++++|||++|
T Consensus 321 ~~p~~~~~~~~~p~~~l~~~~~~~~~~n~~~~l~~i~~~~~~~l~~~ 367 (367)
T 3max_A 321 ELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYMEKIKQRLFENLRML 367 (367)
T ss_dssp BCCCCTTGGGGTTTCBSSCCCCSCCCCCCHHHHHHHHHHHHHHHTTC
T ss_pred CCCchhhHHhhCCCeeccCCcccccCCCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999975
No 3
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=100.00 E-value=1.3e-109 Score=859.04 Aligned_cols=370 Identities=42% Similarity=0.828 Sum_probs=347.2
Q ss_pred CCCCCeEEEEEcCCCCCCCCCCCCCCCchHHHHHHHHHHHcCCCCCceEeCCCCCCHHHHhccChHHHHHHHHhcCchhh
Q 011761 13 DGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQ 92 (478)
Q Consensus 13 ~~~~~~v~~~yd~~~~~~~~g~~HP~~p~R~~~i~~ll~~~gL~~~~~i~~p~~At~eeL~~~Hs~~Yv~~L~~~~~~~~ 92 (478)
..+|+||+|+|||++++| +.+|||+|+|+++++++|+++||++.+++++|++||.++|++||+++||++|++.++...
T Consensus 10 ~~~~~~~~~~y~~~~~~~--~~~HPe~P~Rl~~i~~ll~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~ 87 (388)
T 3ew8_A 10 SGQSLVPVYIYSPEYVSM--CDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGD 87 (388)
T ss_dssp ----CCCEEECCHHHHHH--HTTCTTSTTHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHHHHHC-
T ss_pred cCCCCcEEEEEChHHhcc--CCCCCCCcHHHHHHHHHHHHcCCcccCeEeCCCCCCHHHHHhhCCHHHHHHHHHhccccc
Confidence 456889999999999986 478999999999999999999999999999999999999999999999999998765432
Q ss_pred HHHHHhhhhcccCCCCcCCcchHHHHHHhhhHHHHHHHHhhcCcccEEEeCCCCCCCcccCCCccceeechHHHHHHHHH
Q 011761 93 QDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELL 172 (478)
Q Consensus 93 ~~~~~~~~~~~~~~Dcp~f~gl~~~~~~~aGgsl~aa~~l~~g~~~iAin~~gG~HHA~~~~asGFCy~NdiaiAi~~ll 172 (478)
.. .....+|++++|||+|+++|++|++++||+|.||+++++|++++||||+||+|||++++|+||||||||||||++|+
T Consensus 88 ~~-~~~~~~~~lg~Dtp~~~~~~e~a~~aaGgsl~Aa~~v~~g~~~~Ai~~pGG~HHA~~~~a~GFC~~NdiaiAa~~l~ 166 (388)
T 3ew8_A 88 DD-HPDSIEYGLGYLCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLR 166 (388)
T ss_dssp --------CCSCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHT
T ss_pred cc-chhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHcCCCceeeecCCcccceeecCCCCchhhhHHHHHHHHHH
Confidence 11 12346789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcEEEEeccccCCcccccccccCCceEEeecCCCC-CCCCCCCCCCcccCCCCCccEEecCCCCCCChHHHHHHHHH
Q 011761 173 KQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFG-DYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKP 251 (478)
Q Consensus 173 ~~~~RVl~IDiDvHHGDGtqeaF~~d~~VltiSiH~~~-~ffPgTG~~~eiG~g~G~~~~vNVPL~~G~~D~~y~~~f~~ 251 (478)
+..+||||||||||||||||+|||+||+|||+|||+++ .||||||..+|+|.|+|++|++||||++|++|++|+.+|++
T Consensus 167 ~~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~fPgtG~~~e~G~g~g~g~~vNvPL~~G~~d~~y~~~~~~ 246 (388)
T 3ew8_A 167 RKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICES 246 (388)
T ss_dssp TTCSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECCTTCTTCCCCTTCCCCGGGTTSEEEEEECTTCCHHHHHHHHHH
T ss_pred hcCCeEEEEecCCCCChhHHHHhccCCCEEEEecCCCCCCCCCCCCCcccccCCCCcceeeeccCCCCCCHHHHHHHHHH
Confidence 98999999999999999999999999999999999994 59999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCcchhhhHHHHHhhHhCCc
Q 011761 252 IIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVE 331 (478)
Q Consensus 252 iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~lggGGY~~~~var~w~~~t~~llg~~ 331 (478)
+|.|++++|+||+||||||||++.+||||+|+||++||++|+++|+++++|+++++||||++.+|||||+++|++|+|.+
T Consensus 247 ~l~p~~~~F~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~~~p~l~~~gGGY~~~~var~w~~~~~~l~g~~ 326 (388)
T 3ew8_A 247 VLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKT 326 (388)
T ss_dssp HHHHHHHHHCCSEEEEECCSTTBTTCTTCCCCBCHHHHHHHHHHHHTTCCEEEEECCCCCSHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCCCEEEEECCccCCCCCCCCCCcCCHHHHHHHHHHHHhcCCCEEEEECCCCChhHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccccCCCCccccCCCCCCCcCcHHHHHHHHHHHHHHhhcCCCCC
Q 011761 332 VDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAP 385 (478)
Q Consensus 332 ~~~~iP~~~~~~~~~p~~~l~~~~~~~~~~n~~~~l~~i~~~~~~~l~~l~~ap 385 (478)
+|++||+++||+||+|+|+|++.+++|+|+|+++||++|+++|++||++|++..
T Consensus 327 l~~~lP~~~~~~~~~p~~~l~~~~~~~~~~n~~~~l~~i~~~~~~~l~~~~~~~ 380 (388)
T 3ew8_A 327 LSSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHVVIEG 380 (388)
T ss_dssp CCSBCCCCTTGGGGTTTCBSCCCCCSCCCCCCHHHHHHHHHHHHHHHTTCCC--
T ss_pred CCCCCCcccchhhcCCCccccCCcccCCCCCCHHHHHHHHHHHHHHHhcCCCcc
Confidence 999999999999999999999999999999999999999999999999998754
No 4
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*
Probab=100.00 E-value=5.3e-90 Score=713.21 Aligned_cols=319 Identities=33% Similarity=0.539 Sum_probs=300.4
Q ss_pred CeEEEEEcCCCCCCCCCCCCCCCchHHHHHHHHHHHcCCCCCceEeCCCCCCHHHHhccChHHHHHHHHhcCchhhHHHH
Q 011761 17 RKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQL 96 (478)
Q Consensus 17 ~~v~~~yd~~~~~~~~g~~HP~~p~R~~~i~~ll~~~gL~~~~~i~~p~~At~eeL~~~Hs~~Yv~~L~~~~~~~~~~~~ 96 (478)
++++|+|||+|..|.+|++|||+|.|+++++++|+++||++.+++++|++||.++|++||+++||++|++.++.... ..
T Consensus 2 ~~t~~vy~~~~~~h~~g~~Hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~at~~~l~~vH~~~Yv~~l~~~~~~~~~-~~ 80 (375)
T 1c3p_A 2 KKVKLIGTLDYGKYRYPKNHPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFHTEDYINTLMEAERCQCV-PK 80 (375)
T ss_dssp CCEEEEECGGGGGSCCCTTCGGGSCCHHHHHHHHHHTTCCCGGGEEECCCCCHHHHTTTSCHHHHHHHHHHHHHTSC-CT
T ss_pred ceEEEEECHHHcCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCeEeCCCCCCHHHHHHhCCHHHHHHHHHhccccCC-Ch
Confidence 46899999999999999999999999999999999999999999999999999999999999999999886542110 00
Q ss_pred Hhhhhccc-CCCCcCCcchHHHHHHhhhHHHHHHHHhhcCcccEEEeCCCCCCCcccCCCccceeechHHHHHHHHHhcC
Q 011761 97 RQLKRFNV-GEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQH 175 (478)
Q Consensus 97 ~~~~~~~~-~~Dcp~f~gl~~~~~~~aGgsl~aa~~l~~g~~~iAin~~gG~HHA~~~~asGFCy~NdiaiAi~~ll~~~ 175 (478)
..+.+|++ +.|||+|+++|++|++++||+|.||+++++|+ +||||+||+|||++++|+||||||||||||++|++..
T Consensus 81 ~~~~~~~l~~~dtp~~~~~~~~a~~aaGg~l~aa~~v~~g~--~a~~ppGG~HHA~~~~a~GFC~fNnvAiAa~~l~~~g 158 (375)
T 1c3p_A 81 GAREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKGN--VAFNPAGGMHHAFKSRANGFCYINNPAVGIEYLRKKG 158 (375)
T ss_dssp THHHHHCCSSSSSCSSTTTTHHHHHHHHHHHHHHHHHHTTC--EEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHHHTT
T ss_pred HHhhccccCCCCcccChhHHHHHHHHhhHHHHHHHHHHcCC--ceeecCcccceeeeccCCCceeecHHHHHHHHHHHhC
Confidence 12356777 57999999999999999999999999999997 8999999999999999999999999999999999876
Q ss_pred -CcEEEEeccccCCcccccccccCCceEEeecCCCCC-CCCCCCCCCccc-CCCCCccEEecCCCCCCChHHHHHHHHHH
Q 011761 176 -ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGD-YFPGTGDIRDIG-YSKGKFYSLNVPLDDGIDDESYHYLFKPI 252 (478)
Q Consensus 176 -~RVl~IDiDvHHGDGtqeaF~~d~~VltiSiH~~~~-ffPgTG~~~eiG-~g~G~~~~vNVPL~~G~~D~~y~~~f~~i 252 (478)
+||||||||||||||||++||+||+|||+|||+++. ||||||..+++| .|+|++|++||||++|++|++|+.+|+++
T Consensus 159 ~~RV~IvD~DvHHGnGtq~iF~~dp~Vl~~SiH~~~~~ffPgtG~~~e~G~~g~g~g~~vNvPL~~g~~D~~yl~a~~~~ 238 (375)
T 1c3p_A 159 FKRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKS 238 (375)
T ss_dssp CCCEEEEECSSSCCHHHHHHHTTCSSEEEEEEEECTTTSTTSSSCCTTCCCCGGGTTSEEEEEECTTCCHHHHHHHHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHhccCCCEEEEecccCCCCCCCCCCCccccCCcCCCCceEEEEeCCCCCCHHHHHHHHHHH
Confidence 699999999999999999999999999999999965 799999999999 99999999999999999999999999999
Q ss_pred HHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCcchhhhHHHHHhhHhCCcC
Q 011761 253 IGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEV 332 (478)
Q Consensus 253 v~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~lggGGY~~~~var~w~~~t~~llg~~~ 332 (478)
|.|++++|+||+||||||||++.+||||.|+||.+||.+++++|+++..|+++++||||++.++++||++++++|+|.++
T Consensus 239 l~p~l~~F~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a~~vv~vleGGY~~~~l~~~~~~~~~~l~g~~~ 318 (375)
T 1c3p_A 239 LEIVKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVREVFGEGVYLGGGGYHPYALARAWTLIWCELSGREV 318 (375)
T ss_dssp HHHHHHHCCCSEEEEECCSTTBTTCTTCSCCBCHHHHHHHHHHHHHHHCSCEEECCCCCCHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhCCCEEEEECCccccCCCCCCCcccCHHHHHHHHHHHHHhccceEEEECCCCChHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 011761 333 DDKMPQ 338 (478)
Q Consensus 333 ~~~iP~ 338 (478)
|+.||.
T Consensus 319 ~~~lp~ 324 (375)
T 1c3p_A 319 PEKLNN 324 (375)
T ss_dssp CSSCCH
T ss_pred CccCCH
Confidence 988996
No 5
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=100.00 E-value=9.2e-87 Score=687.74 Aligned_cols=315 Identities=23% Similarity=0.384 Sum_probs=296.0
Q ss_pred eEEEEEcCCCCCCCCCCC----------------CCCCchHHHHHHHHHHHcCCCCCceEeCCCCCCHHHHhccChHHHH
Q 011761 18 KVCYFYDPEVGNYYYGQG----------------HPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYV 81 (478)
Q Consensus 18 ~v~~~yd~~~~~~~~g~~----------------HP~~p~R~~~i~~ll~~~gL~~~~~i~~p~~At~eeL~~~Hs~~Yv 81 (478)
+++|+|||.|..|.++.+ |||+|.|+++++++|+++||.+.+++++|++||.++|++||+++||
T Consensus 2 ~t~~~y~~~~~~h~~~~~~~~~~~~g~~~~~~~~Hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~a~~~~l~~vH~~~Yv 81 (369)
T 1zz1_A 2 AIGYVWNTLYGWVDTGTGSLAAANLTARMQPISHHLAHPDTKRRFHELVCASGQIEHLTPIAAVAATDADILRAHSAAHL 81 (369)
T ss_dssp CEEEECCGGGGGCCCCSSSSSCCBTTTTBCCCSSCTTCTHHHHHHHHHHHHTTGGGGSEECCCCCCCHHHHHTTSCHHHH
T ss_pred eEEEEEchHHcccCCCCcccccccccccccccCCCCCCHHHHHHHHHHHHhcCCCccceEeCCCcCCHHHHHHhccHHHH
Confidence 689999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCchhhHHHHHhhhhcccCC-CCcCCcchHHHHHHhhhHHHHHHHHhhcCccc--EEEeCCCCCCCcccCCCccc
Q 011761 82 SFLRSITPETQQDQLRQLKRFNVGE-DCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCD--IAINWAGGLHHAKKCEASGF 158 (478)
Q Consensus 82 ~~L~~~~~~~~~~~~~~~~~~~~~~-Dcp~f~gl~~~~~~~aGgsl~aa~~l~~g~~~--iAin~~gG~HHA~~~~asGF 158 (478)
++|++.++. ...+.++. |||+++++|+++++++||+|.||+++++|+++ +|++|||| |||++++++||
T Consensus 82 ~~l~~~~~~--------~~~~~l~~~dtp~~~~~~~~a~~aaG~~l~aa~~v~~g~~~~afa~~rppG-HHA~~~~a~GF 152 (369)
T 1zz1_A 82 ENMKRVSNL--------PTGGDTGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPG-HHAPHNAAMGF 152 (369)
T ss_dssp HHHHHHHHS--------TTCEECSSSSCEECTTTHHHHHHHHHHHHHHHHHHHTTSCSEEEECCSSCC-TTCCTTCCBTT
T ss_pred HHHHHhCcc--------ccceecCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEecCCc-cCcCCCCCCCc
Confidence 999876431 02345777 99999999999999999999999999999866 56899999 99999999999
Q ss_pred eeechHHHHHHHHHhcC--CcEEEEeccccCCcccccccccCCceEEeecCCCCCCCC-CCCCCCcccCCCCCccEEecC
Q 011761 159 CYVNDIVLAILELLKQH--ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFP-GTGDIRDIGYSKGKFYSLNVP 235 (478)
Q Consensus 159 Cy~NdiaiAi~~ll~~~--~RVl~IDiDvHHGDGtqeaF~~d~~VltiSiH~~~~ffP-gTG~~~eiG~g~G~~~~vNVP 235 (478)
||||||||||++|++++ +||||||||||||||||++||+||+|||+|||+++ ||| +||..+|+|.|+|++|++|||
T Consensus 153 C~fNnvAiAa~~l~~~~g~~RV~IvD~DvHHGnGTq~iF~~d~~Vl~~SiH~~~-~yP~~tG~~~e~G~g~g~g~~vNvP 231 (369)
T 1zz1_A 153 CIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHL-CFPPDSGYSTERGAGNGHGYNINVP 231 (369)
T ss_dssp BSSCHHHHHHHHHHHTSCCSCEEEEECSSSCCHHHHHHTTTCTTEEEEEEEETT-SSSTTCCCTTCCCCGGGTTCEEEEE
T ss_pred hHhhHHHHHHHHHHHhcCCCeEEEEecCCCCchhhhHHhcCCCCEEEEeccCCC-CCCCCCCcccccCCCCCCceEEeee
Confidence 99999999999999874 89999999999999999999999999999999996 999 999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHh-----cCCCEEEEeCCC
Q 011761 236 LDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRS-----FNVPLLLLGGGG 310 (478)
Q Consensus 236 L~~G~~D~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~-----~~~pll~lggGG 310 (478)
|++|++|++|+.+|+++|.|++++|+||+||||||||++.+||||.|+||.+||.+++++|++ +++|+++++|||
T Consensus 232 L~~g~~d~~yl~~~~~~v~p~l~~f~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a~~~~~g~vv~vleGG 311 (369)
T 1zz1_A 232 LPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICDGRIVFVQEGG 311 (369)
T ss_dssp ECTTCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCTTCCCBBCHHHHHHHHHHHHHHHHHHSTTCEEEEECCC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeCCccCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 999999999999999999999999999999999999999999999999999999999998876 489999999999
Q ss_pred CCCcchhhhHHHHHhhHhCCcCCCCCCCccccc
Q 011761 311 YTIRNVARCWCYETGVALGVEVDDKMPQHEYYE 343 (478)
Q Consensus 311 Y~~~~var~w~~~t~~llg~~~~~~iP~~~~~~ 343 (478)
|++.++++||++++..|+|.++ ...|..++++
T Consensus 312 Y~~~~l~~~~~~~~~~l~g~~~-~~~p~~~~~~ 343 (369)
T 1zz1_A 312 YSPHYLPFCGLAVIEELTGVRS-LPDPYHEFLA 343 (369)
T ss_dssp CCTTTHHHHHHHHHHHHHCCCC-CCCTTHHHHH
T ss_pred CCccHHHHHHHHHHHHHhCCCC-CCCchhHHHh
Confidence 9999999999999999999987 6667777665
No 6
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*
Probab=100.00 E-value=3.6e-86 Score=692.39 Aligned_cols=364 Identities=23% Similarity=0.365 Sum_probs=312.9
Q ss_pred CCCeEEEEEcCCCCCCCCC----CCCCCCchHHHHHHHHHHHcCCCCCceEeCCCCCCHHHHhccChHHHHHHHHhcCch
Q 011761 15 VKRKVCYFYDPEVGNYYYG----QGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPE 90 (478)
Q Consensus 15 ~~~~v~~~yd~~~~~~~~g----~~HP~~p~R~~~i~~ll~~~gL~~~~~i~~p~~At~eeL~~~Hs~~Yv~~L~~~~~~ 90 (478)
.+.+|+|+||++|..|..+ ..|||+|.|+++|+++|+++||.+++++++|++||.+||++|||++||++++.....
T Consensus 6 p~~~Tg~vyd~~~l~H~~~~g~~~~HPE~P~Rl~~i~~~L~~~gl~~~~~~~~p~~At~eeL~~vHs~~Yv~~~~~~~~~ 85 (413)
T 2vqm_A 6 PRFTTGLVYDTLMLKHQCTCGSSSSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLN 85 (413)
T ss_dssp CCSSEEEECCGGGCSCCCTTC-------CCCHHHHHHHHHHHHTHHHHSEEECCCCCCHHHHTTTSCHHHHHHHHSCGGG
T ss_pred CCCeEEEEEcHHHhccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCcCCeEeCCCCCCHHHHHHhCCHHHHHHHhcCchh
Confidence 3568999999999999865 449999999999999999999999999999999999999999999999888653211
Q ss_pred hhH----H----HHHhh-----hhcccCCCCcCCc-chHHHHHHhhhHHHHHHHHhhcCcccE--EEeCCCCCCCcccCC
Q 011761 91 TQQ----D----QLRQL-----KRFNVGEDCPVFD-GLFSFCQTYAGGSVGGAVKLNHGLCDI--AINWAGGLHHAKKCE 154 (478)
Q Consensus 91 ~~~----~----~~~~~-----~~~~~~~Dcp~f~-gl~~~~~~~aGgsl~aa~~l~~g~~~i--Ain~~gG~HHA~~~~ 154 (478)
... . ..... ..+.+..|+++.. +++.++++++|+++.|++++.+|+++. |++|||| |||++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~dt~~~~~~s~~aA~laaG~~l~a~~~v~~g~~~~afa~vrppG-HHA~~~~ 164 (413)
T 2vqm_A 86 RQKLDSKKLLGSLASVFVRLPCGGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGFAVVRPPG-HHAEEST 164 (413)
T ss_dssp GCC----HHHHHHHHHEEECTTSCEEECTTSTHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCCSCC-TTCBTTB
T ss_pred hhHhhhhhhccchhhhhhccccCCcCccCCccccchhHHHHHHHHHHHHHHHHHHHhcCCccceeeeccccc-ccCcCCC
Confidence 100 0 00000 1122344554443 578899999999999999999998775 5567887 9999999
Q ss_pred CccceeechHHHHHHHHHhcC--CcEEEEeccccCCcccccccccCCceEEeecCCC--CCCCCCCCCCCcccCCCCCcc
Q 011761 155 ASGFCYVNDIVLAILELLKQH--ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIRDIGYSKGKFY 230 (478)
Q Consensus 155 asGFCy~NdiaiAi~~ll~~~--~RVl~IDiDvHHGDGtqeaF~~d~~VltiSiH~~--~~ffPgTG~~~eiG~g~G~~~ 230 (478)
|+||||||||||||++|++.+ +||||||||||||||||+|||+|++|||+|||++ +.||||||..+|+|.|+|++|
T Consensus 165 a~GFC~~Nnvaiaa~~~~~~~~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~f~pgtG~~~e~G~g~g~g~ 244 (413)
T 2vqm_A 165 PMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGF 244 (413)
T ss_dssp CBTTBSSCHHHHHHHHHHHHSCCSCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGGCSTTCCCCTTCCCSGGGTTC
T ss_pred CCCccccchHHHHHHHHHHhcCCCeEEEEecccCCCccHHHHHhcCcccccccchhccCCCCCCCCCCHHHcCCCccccc
Confidence 999999999999999998764 8999999999999999999999999999999998 469999999999999999999
Q ss_pred EEecCCCC----CCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCC--CCCCCcccCHHhHHHHHHHHHhc-CCCE
Q 011761 231 SLNVPLDD----GIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSG--DRLGCFNLSIKGHAECVKFMRSF-NVPL 303 (478)
Q Consensus 231 ~vNVPL~~----G~~D~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~g--DpLG~~nLs~~g~~~~~~~l~~~-~~pl 303 (478)
++||||+. |++|++|+.+|+.+|.|++++|+||+||||||||++.+ ||||+|+||.++|.+++++|+++ ++|+
T Consensus 245 ~~n~pl~~g~~~~~~D~~y~~~~~~~v~p~~~~f~PdlivvsaG~Da~~~d~D~lg~~~lt~~~~~~~~~~l~~~a~~~~ 324 (413)
T 2vqm_A 245 NVNMAFTGGLDPPMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHPTPLGGYNLSARCFGYLTKQLMGLAGGRI 324 (413)
T ss_dssp EEEEEECSCSSSCCCHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBSSCTTTTCCCCBCHHHHHHHHHHHHTSGGGCE
T ss_pred ccccccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeCChhhcCCCCCCCCCcccCHHHHHHHHHHHHHhcCCCE
Confidence 99999975 57899999999999999999999999999999999999 66999999999999999999997 8999
Q ss_pred EEEeCCCCCCcchhhhHHHHHhhHhCCcCCCCCCCcccccccCCCCccccCCCCCCCcCcHHHHHHHHHHHHHHhhcCCC
Q 011761 304 LLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQH 383 (478)
Q Consensus 304 l~lggGGY~~~~var~w~~~t~~llg~~~~~~iP~~~~~~~~~p~~~l~~~~~~~~~~n~~~~l~~i~~~~~~~l~~l~~ 383 (478)
++++||||+++++++||+++++.|+|.+++ .+|+ ..+. ..++.|+.++|+++++...+.|+.|+.
T Consensus 325 v~vleGGY~~~~l~~~~~~~~~~l~g~~~~-~~p~----------~~~~----~~p~~~~~~~~~~v~~~~~~~W~~l~~ 389 (413)
T 2vqm_A 325 VLALEGGHDLTAICDASEACVSALLGNELD-PLPE----------KVLQ----QRPNANAVRSMEKVMEIHSKYWRCLQR 389 (413)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTTCCCC-CCCH----------HHHH----CCCCHHHHHHHHHHHHHHHTTCGGGTS
T ss_pred EEEeCcCCChHHHHHHHHHHHHHHcCCCCC-CCCh----------hhhh----cCCChHHHHHHHHHHHHHHHHhhhhhc
Confidence 999999999999999999999999998765 2332 2222 235889999999999999999999999
Q ss_pred CCCccceeCCC
Q 011761 384 APSVQFQERPP 394 (478)
Q Consensus 384 apsv~~~~~~~ 394 (478)
+|+++++..+.
T Consensus 390 ~~~~~~~~~~~ 400 (413)
T 2vqm_A 390 TTSTAGRSLIE 400 (413)
T ss_dssp CCCCTTSCHHH
T ss_pred chhhcCcCcch
Confidence 99999987654
No 7
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=100.00 E-value=1.2e-83 Score=656.59 Aligned_cols=304 Identities=20% Similarity=0.335 Sum_probs=279.9
Q ss_pred EEEcCCCCCCCCCC--------CCCCCchHHHHHHHHHHHcCCCCCceEeCCCCCCHHHHhccChHHHHHHHHhcCchhh
Q 011761 21 YFYDPEVGNYYYGQ--------GHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQ 92 (478)
Q Consensus 21 ~~yd~~~~~~~~g~--------~HP~~p~R~~~i~~ll~~~gL~~~~~i~~p~~At~eeL~~~Hs~~Yv~~L~~~~~~~~ 92 (478)
++|||++..|..+. .|||+|+|+++|+++|+++||. ++++|++||.++|++|||++||++|++.++++.
T Consensus 3 ~v~~~~~~~H~~~~~~~~G~~~~HPE~P~Rl~~i~~~L~~~gl~---~~~~p~~at~e~L~~vHs~~Yi~~l~~~~~~~~ 79 (341)
T 3q9b_A 3 VIFSEDHKLRNAKTELYGGELVPPFEAPFRAEWILAAVKEAGFD---DVVAPARHGLETVLKVHDAGYLNFLETAWDRWK 79 (341)
T ss_dssp EECCGGGGGCCCSCEEETTEEECCSSCTHHHHHHHHHHHHTTCC---CEECCCCCCSTTGGGTSCHHHHHHHHHHHHHHH
T ss_pred EEECcHHhccCCcccccCCCcCCCCCChHHHHHHHHHHHhCCCC---ceeCCCCCCHHHHHHhCCHHHHHHHHHhhhhhh
Confidence 68999999998765 6999999999999999999985 688999999999999999999999998754321
Q ss_pred H-----------------------HHHHhhhhcccCCCCcCCcchHHHHHHhhhHHHHHHHHhhcCc-ccEEEeCCCCCC
Q 011761 93 Q-----------------------DQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGL-CDIAINWAGGLH 148 (478)
Q Consensus 93 ~-----------------------~~~~~~~~~~~~~Dcp~f~gl~~~~~~~aGgsl~aa~~l~~g~-~~iAin~~gG~H 148 (478)
. ....+...|+++.|||+++++|++|++++|++|.||+++++|+ ..+|++|||| |
T Consensus 80 ~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~g~~~~d~dt~~~~~~~~aa~~aaG~~l~a~~~v~~g~~~afal~rppG-H 158 (341)
T 3q9b_A 80 AAGYKGEAIATSFPVRRTSPRIPTDIEGQIGYYCNAAETAISPGTWEAALSSMASAIDGADLIAAGHKAAFSLCRPPG-H 158 (341)
T ss_dssp HTTCSSCBCCCBCCCTTCCCCCCSSHHHHHHHTBSBTTCCBCTTHHHHHHHHHHHHHHHHHHHHHTCSEEEECCSSCC-T
T ss_pred hcccccccccccccccccccccccchhcccceeccCCCCCcChhHHHHHHHHHHHHHHHHHHHHhCCCceEecCCCCC-C
Confidence 1 0011245678899999999999999999999999999999985 5688999999 9
Q ss_pred CcccCCCccceeechHHHHHHHHHhc-CCcEEEEeccccCCcccccccccCCceEEeecCCCC-CCCCC-CCCCCcccCC
Q 011761 149 HAKKCEASGFCYVNDIVLAILELLKQ-HERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFG-DYFPG-TGDIRDIGYS 225 (478)
Q Consensus 149 HA~~~~asGFCy~NdiaiAi~~ll~~-~~RVl~IDiDvHHGDGtqeaF~~d~~VltiSiH~~~-~ffPg-TG~~~eiG~g 225 (478)
||++++++||||||||||||++|++. .+||||||||||||||||++||+||+|||+|||+++ .|||+ ||..+|+|.|
T Consensus 159 HA~~~~a~GFC~~NnvaiAa~~l~~~g~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~yP~~tG~~~e~G~g 238 (341)
T 3q9b_A 159 HAGIDMFGGYCFINNAAVAAQRLLDKGAKKIAILDVDFHHGNGTQDIFYERGDVFFASLHGDPAEAFPHFLGYAEETGKG 238 (341)
T ss_dssp TCBTTBBBTTBSSCHHHHHHHHHHHTTCSCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGGSTTCSSCCTTCCCCG
T ss_pred CCCCCCCCCccccCHHHHHHHHHHHcCCCeEEEEecCCCCCcchhHHhcCCCCEEEEeccCCCccCCCCCCCcccccCCC
Confidence 99999999999999999999999987 699999999999999999999999999999999994 69999 9999999999
Q ss_pred CCCccEEecCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEE
Q 011761 226 KGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLL 305 (478)
Q Consensus 226 ~G~~~~vNVPL~~G~~D~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~ 305 (478)
+|++|++||||++|++|++|+.+|+.++ +++++|+||+||||||||++.+||||.|+||++||.+|+++|+++++|+++
T Consensus 239 ~g~g~~vNvpL~~g~~d~~y~~~~~~~l-~~l~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~~~~~v~ 317 (341)
T 3q9b_A 239 AGAGTTANYPMGRGTPYSVWGEALTDSL-KRIAAFGAEAIVVSLGVDTFEQDPISFFKLTSPDYITMGRTIAASGVPLLV 317 (341)
T ss_dssp GGTTCEEEEEECTTCBHHHHHHHHHHHH-HHHHHHTCSCEEEEECCTTBTTCTTCCCBBCTTHHHHHHHHHHTTSSCEEE
T ss_pred CCCceeEeeecCCCCChHHHHHHHHHHH-HHHHhhCCCEEEEeCCccccCCCCCCCccCCHHHHHHHHHHHHHhCCCEEE
Confidence 9999999999999999999999999976 578999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCcchhhhHHHHHhhHhC
Q 011761 306 LGGGGYTIRNVARCWCYETGVALG 329 (478)
Q Consensus 306 lggGGY~~~~var~w~~~t~~llg 329 (478)
++||||++.++++||......+.|
T Consensus 318 vleGGY~~~~l~~~~~~~l~g~~~ 341 (341)
T 3q9b_A 318 VMEGGYGVPEIGLNVANVLKGVAG 341 (341)
T ss_dssp EECCCCCCTTHHHHHHHHHHHHHC
T ss_pred EECCCCChHHHHHHHHHHHHHhcC
Confidence 999999999999999988776643
No 8
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=5.3e-83 Score=655.39 Aligned_cols=305 Identities=24% Similarity=0.389 Sum_probs=281.7
Q ss_pred EEEEEcCCCCCCCCCC--------CCCCCchHHHHHHHHHHHcCCCCCceEeCCCCCCHHHHhccChHHHHHHHHhcCch
Q 011761 19 VCYFYDPEVGNYYYGQ--------GHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPE 90 (478)
Q Consensus 19 v~~~yd~~~~~~~~g~--------~HP~~p~R~~~i~~ll~~~gL~~~~~i~~p~~At~eeL~~~Hs~~Yv~~L~~~~~~ 90 (478)
..++|||++..|..+. .|||+|.|+++|+++|+++|| ++++|++||.++|++|||++||++|++.+++
T Consensus 22 M~~~~~~~~~~H~~~~~~~~G~~~~HPE~P~Rl~~i~~~L~~~gl----~~~~p~~At~e~L~~vHs~~YI~~l~~~~~~ 97 (362)
T 3men_A 22 MLTYFHPDQSLHHPRTYFSRGRMRMPQEVPERAARLVAAAFAMGF----PVREPDDFGIAPIAAVHDTHYLRFLETVHRE 97 (362)
T ss_dssp CEEECCGGGGGCCCCCEEETTEEECCCSCTHHHHHHHHHHHHTTC----CEECCCCCCSHHHHTTSCHHHHHHHHHHHHH
T ss_pred eEEEEChHHHhhCCccccccCCcCCCCCChHHHHHHHHHHHhCCC----eEeCCCCCCHHHHHHhCCHHHHHHHHHhhhh
Confidence 3589999999998875 799999999999999999997 6899999999999999999999999886532
Q ss_pred hhH----------------------HHHHhhhhcccCCCCcCCcchHHHHHHhhhHHHHHHHHhhcCc-ccEEEeCCCCC
Q 011761 91 TQQ----------------------DQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGL-CDIAINWAGGL 147 (478)
Q Consensus 91 ~~~----------------------~~~~~~~~~~~~~Dcp~f~gl~~~~~~~aGgsl~aa~~l~~g~-~~iAin~~gG~ 147 (478)
... ........+.++.|||+++++|++|++++|++|.||++|++|+ ..+|++||||
T Consensus 98 ~~~~~~~~~~e~~p~~~p~~~~~p~~~~~~~g~~~~d~Dtpv~~~~~~aa~~aaG~~l~aa~~v~~g~~~afal~rPpG- 176 (362)
T 3men_A 98 WKAMPEDWGDEAMSNIFVREPNALRGVLAQAARHLADGSCPVGEHTWRAAYWSAQSALAAAAAVRDGAPAAYALCRPPG- 176 (362)
T ss_dssp HHTSCGGGCSSBCCCBCCCSSCCCCSHHHHHHHHBCBTTCCBCTTHHHHHHHHHHHHHHHHHHHHTTCSEEEECCSSCC-
T ss_pred hhhcccccccccccccccccccccccccccccccccCCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCC-
Confidence 211 0011233467889999999999999999999999999999995 5688999999
Q ss_pred CCcccCCCccceeechHHHHHHHHHhcCCcEEEEeccccCCcccccccccCCceEEeecCCC-CCCCCC-CCCCCcccCC
Q 011761 148 HHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF-GDYFPG-TGDIRDIGYS 225 (478)
Q Consensus 148 HHA~~~~asGFCy~NdiaiAi~~ll~~~~RVl~IDiDvHHGDGtqeaF~~d~~VltiSiH~~-~~ffPg-TG~~~eiG~g 225 (478)
|||++++++||||||||||||++|+++++||||||||||||||||++||+||+|||+|||++ +.|||+ ||..+|+|.|
T Consensus 177 HHA~~~~a~GFC~fNnvAiAa~~l~~~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~yP~~tG~~~e~G~g 256 (362)
T 3men_A 177 HHARVDAAGGFCYLNNAAIAAQALRARHARVAVLDTDMHHGQGIQEIFYARRDVLYVSIHGDPTNFYPAVAGFDDERGAG 256 (362)
T ss_dssp TTCBTTBBBTTBSSCHHHHHHHHHTTTCSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECCTTSTTCSSCCTTCCCSG
T ss_pred CCCCCCCCCCccccCHHHHHHHHHHHcCCeEEEEeCcCCCchhHhHHhcCCCCEEEEEecCCCccCCCCCCCccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999 469999 9999999999
Q ss_pred CCCccEEecCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEE
Q 011761 226 KGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLL 305 (478)
Q Consensus 226 ~G~~~~vNVPL~~G~~D~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~ 305 (478)
+|++|++||||++|++|++|+.+|+.++ +++++|+||+||||||||++.+||||.|+||++||.+|+++|+++++|+++
T Consensus 257 ~g~g~~vNvPL~~g~~d~~yl~~~~~~l-~~l~~f~PdlIvvsaG~Da~~~Dplg~l~lt~~~~~~~~~~l~~~~~~~v~ 335 (362)
T 3men_A 257 EGLGYNVNLPMPHGSSEAAFFERVDDAL-RELRRFAPDALVLSLGFDVYRDDPQSQVAVTTDGFGRLGHLIGALRLPTVI 335 (362)
T ss_dssp GGTTSEEEEEECTTBCHHHHHHHHHHHH-HHHHHHCCSEEEEEECSTTBTTCTTCCBCBCHHHHHHHHHHHHTTCCCEEE
T ss_pred CCCceeEeeccCCCCChHHHHHHHHHHH-HHHHhcCCCEEEEECcccCcCCCCCCCccCCHHHHHHHHHHHHhhCCCEEE
Confidence 9999999999999999999999999976 678999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCcchhhhHHHHHhhHhC
Q 011761 306 LGGGGYTIRNVARCWCYETGVALG 329 (478)
Q Consensus 306 lggGGY~~~~var~w~~~t~~llg 329 (478)
++||||++.++++|+......+.|
T Consensus 336 vleGGY~~~~l~~~~~a~l~~l~~ 359 (362)
T 3men_A 336 VQEGGYHIESLEANARSFFGGFGA 359 (362)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTC
T ss_pred EECCCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999998888776
No 9
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens} PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A* 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Probab=100.00 E-value=2.7e-82 Score=659.50 Aligned_cols=352 Identities=24% Similarity=0.364 Sum_probs=301.2
Q ss_pred CeEEEEEcCCCCCCC----CCCCCCCCchHHHHHHHHHHHcCCCCCceEeCCCCCCHHHHhccChHHHHHHHHhcC--c-
Q 011761 17 RKVCYFYDPEVGNYY----YGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSIT--P- 89 (478)
Q Consensus 17 ~~v~~~yd~~~~~~~----~g~~HP~~p~R~~~i~~ll~~~gL~~~~~i~~p~~At~eeL~~~Hs~~Yv~~L~~~~--~- 89 (478)
.+++|+||++|..|. +++.|||+|.|+++|+++|+++||++.+++++|++||.+||++||+++||+.+.... .
T Consensus 36 ~~t~~vyd~~~l~H~~~~~~~~~HPE~P~Rl~~i~~~L~~~Gl~~~~~~~~p~~At~eeL~~vHs~~YI~~~~~~~l~~~ 115 (421)
T 2pqp_A 36 FTTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPLSRL 115 (421)
T ss_dssp TCEEEECCGGGGGCCCTTCCTTSCSSCTHHHHHHHHHHHHTTCGGGSEEECCCCCCHHHHTTTSCHHHHHHHHCCTTCSC
T ss_pred CeEEEEECHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHhcCCcccCeeeCCCCCCHHHHHhcCCHHHHHhhhcchhhhh
Confidence 579999999999998 688999999999999999999999999999999999999999999999998653211 0
Q ss_pred hhhHH-HHHhh-h-------hc--ccCCCCcCCc-chHHHHHHhhhHHHHHHHHhhcCccc--EEEeCCCCCCCcccCCC
Q 011761 90 ETQQD-QLRQL-K-------RF--NVGEDCPVFD-GLFSFCQTYAGGSVGGAVKLNHGLCD--IAINWAGGLHHAKKCEA 155 (478)
Q Consensus 90 ~~~~~-~~~~~-~-------~~--~~~~Dcp~f~-gl~~~~~~~aGgsl~aa~~l~~g~~~--iAin~~gG~HHA~~~~a 155 (478)
+.... ....+ . .+ +++.|++++. ++|+++++++|++|.|++++.+|+++ +|++|||| |||+++++
T Consensus 116 ~~~~~~~~g~~~~~~~~~~p~gg~~~D~Dt~~~~~~s~~aa~~aaG~~~~a~~~v~~g~~~~afa~~rPpG-HHA~~~~a 194 (421)
T 2pqp_A 116 KLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPG-HHADHSTA 194 (421)
T ss_dssp CCCHHHHHHHHSCCCCEECTTSCEESSSSCEECTTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCSSCC-TTCBTTBC
T ss_pred hhhcccccccchhhhhhhccccCcCCCCCcccCCccHHHHHHHHHhHHHHHHHHHHcCccccceeeCCCCC-CCCCCCCC
Confidence 00000 00000 1 11 2345666663 78999999999999999999999765 77889999 99999999
Q ss_pred ccceeechHHHHHHHHHhc--CCcEEEEeccccCCcccccccccCCceEEeecCCC--CCCCCCCCCCCcccCCCCCccE
Q 011761 156 SGFCYVNDIVLAILELLKQ--HERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIRDIGYSKGKFYS 231 (478)
Q Consensus 156 sGFCy~NdiaiAi~~ll~~--~~RVl~IDiDvHHGDGtqeaF~~d~~VltiSiH~~--~~ffPgTG~~~eiG~g~G~~~~ 231 (478)
+||||||||||||++|++. .+||+|||||||||||||++||+|++|||+|||++ ++||||||..+++|.|.|+||+
T Consensus 195 ~GFC~fNnvAiAa~~l~~~~~~~RV~ivD~DvHHGnGtq~iF~~dp~Vl~~S~H~~~~g~~yPgtG~~~e~G~g~g~g~~ 274 (421)
T 2pqp_A 195 MGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGAGSGEGFN 274 (421)
T ss_dssp BTTBSSCHHHHHHHHHHHHSTTCCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGGTSTTCCCCTTCCCCGGGTTCE
T ss_pred CcchhhCHHHHHHHHHHHhcCCCeEEEEecCCCCChhHHHHhcCCCCEEEEecccCCCCCCCCCCCChhhccCCCCccce
Confidence 9999999999999999976 48999999999999999999999999999999998 4699999999999999999999
Q ss_pred EecCCCCC----CChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCC--CCCCcccCHHhHHHHHHHHHhc-CCCEE
Q 011761 232 LNVPLDDG----IDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGD--RLGCFNLSIKGHAECVKFMRSF-NVPLL 304 (478)
Q Consensus 232 vNVPL~~G----~~D~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gD--pLG~~nLs~~g~~~~~~~l~~~-~~pll 304 (478)
+||||+.| ++|++|+.+|+.+|.|++++|+||+||||||||++.+| |||.++||.++|.++++.|+++ ++|++
T Consensus 275 vNvPl~~gl~~g~~d~~yl~~~~~~l~p~~~~F~PdlIvvsaG~Da~~gD~dpLg~~~lt~~~y~~~~~~l~~~a~grvv 354 (421)
T 2pqp_A 275 VNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLAGGAVV 354 (421)
T ss_dssp EEEEECSCSSSCCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCCGGGCCCBBCHHHHHHHHHHHTTSGGGCEE
T ss_pred eccccCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCCcccccccccccCCceeCHHHHHHHHHHHHHHcCCCEE
Confidence 99999755 68999999999999999999999999999999999997 9999999999999999999887 89999
Q ss_pred EEeCCCCCCcchhhhHHHHHhhHhCCcCCCCCCCcccccccCCCCccccCCCCCCCcCcHHHHHHHHHHHHHHhhcCCCC
Q 011761 305 LLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHA 384 (478)
Q Consensus 305 ~lggGGY~~~~var~w~~~t~~llg~~~~~~iP~~~~~~~~~p~~~l~~~~~~~~~~n~~~~l~~i~~~~~~~l~~l~~a 384 (478)
+++||||++.++++||+.++..|+|.+++. +|... ....++.+..+.|++++....+.|+-|+..
T Consensus 355 ~vlEGGY~l~~l~~~~~a~~~~L~g~~~~~-l~~~~--------------~~~~p~~~a~~~i~~v~~~~~~yW~~l~~~ 419 (421)
T 2pqp_A 355 LALEGGHDLTAICDASEACVAALLGNRVDP-LSEEG--------------WKQKPNLNAIRSLEAVIRVHSKYWGCMQRL 419 (421)
T ss_dssp EEECSCCCHHHHHHHHHHHHHHHTTCCCCG-GGCGG--------------GGSCCCHHHHHHHHHHHHHHTTTCGGGCC-
T ss_pred EEECCCCChHHHHHHHHHHHHHHcCCCCCC-Ccccc--------------cccccCHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 999999999999999999999999976531 22110 112355667777888877777777766543
No 10
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=81.25 E-value=1.5 Score=39.88 Aligned_cols=70 Identities=13% Similarity=0.216 Sum_probs=40.3
Q ss_pred EecCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCC-CCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEE
Q 011761 232 LNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGA-DSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLL 306 (478)
Q Consensus 232 vNVPL~~G~~D~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~-D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~l 306 (478)
+|..+. |-+-...+.-|+. .+..++||+|||.+|. |...+-+........+.+..+++.++..+.+++++
T Consensus 54 iN~Gi~-G~tt~~~l~r~~~----~v~~~~Pd~vvi~~G~ND~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~iil~ 124 (209)
T 4hf7_A 54 IGRGIS-GQTSYQFLLRFRE----DVINLSPALVVINAGTNDVAENTGAYNEDYTFGNIASMAELAKANKIKVILT 124 (209)
T ss_dssp EEEECT-TCCHHHHHHHHHH----HTGGGCCSEEEECCCHHHHTTSSSSCCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEeccC-cccHHHHHHHHHH----HHHhcCCCEEEEEeCCCcCccccccccHHHHHHHHHHhhHHHhccCceEEEE
Confidence 454332 2233444444443 2345899999999997 44333322233334455667777777777777665
No 11
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=71.51 E-value=1.5 Score=36.34 Aligned_cols=57 Identities=16% Similarity=0.234 Sum_probs=48.1
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHh-----HHHHHHHHHhcCCCEEEE
Q 011761 250 KPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKG-----HAECVKFMRSFNVPLLLL 306 (478)
Q Consensus 250 ~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g-----~~~~~~~l~~~~~pll~l 306 (478)
+++|..++++|+-++=|++++.|...+.++|.+-+...| ..+.+++|++.++.+=++
T Consensus 34 ~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~~~v~vEvl 95 (98)
T 3ced_A 34 EPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVL 95 (98)
T ss_dssp HHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred chHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 588889999999999999999999999999998875554 566788888888766555
No 12
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=63.13 E-value=15 Score=31.98 Aligned_cols=46 Identities=13% Similarity=0.221 Sum_probs=30.1
Q ss_pred HHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHh----HHHHHHHHHhcCCCEEEE
Q 011761 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKG----HAECVKFMRSFNVPLLLL 306 (478)
Q Consensus 255 pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g----~~~~~~~l~~~~~pll~l 306 (478)
..+..++||+|||+.|..=... ..+.+. +.++++.+++.+.+++++
T Consensus 56 ~~~~~~~pd~Vii~~G~ND~~~------~~~~~~~~~~l~~li~~~~~~~~~vil~ 105 (190)
T 1ivn_A 56 ALLKQHQPRWVLVELGGNDGLR------GFQPQQTEQTLRQILQDVKAANAEPLLM 105 (190)
T ss_dssp HHHHHHCCSEEEEECCTTTTSS------SCCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHhcCCCEEEEEeecccccc------CCCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 4455689999999999754321 234444 455677777777776665
No 13
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=62.15 E-value=21 Score=31.50 Aligned_cols=64 Identities=9% Similarity=0.166 Sum_probs=37.6
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhH----HHHHHHHHhcC--CCEE
Q 011761 231 SLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGH----AECVKFMRSFN--VPLL 304 (478)
Q Consensus 231 ~vNVPL~~G~~D~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~----~~~~~~l~~~~--~pll 304 (478)
..|.....+.+...++..+. ..+...+||+||+.+|..=. ..+.+.| .++++.+++.+ .+++
T Consensus 48 v~~~~~~~~~~~~~~~~~~~----~~~~~~~pd~Vvi~~G~ND~--------~~~~~~~~~~l~~ii~~l~~~~p~~~ii 115 (200)
T 4h08_A 48 VGRLSNSKSVGDPALIEELA----VVLKNTKFDVIHFNNGLHGF--------DYTEEEYDKSFPKLIKIIRKYAPKAKLI 115 (200)
T ss_dssp EEEEEESCCTTCHHHHHHHH----HHHHHSCCSEEEECCCSSCT--------TSCHHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred EEEEeccCCccHHHHHHHHH----HHHhcCCCCeEEEEeeeCCC--------CCCHHHHHHHHHHHHHHHhhhCCCccEE
Confidence 34444444555555555544 34557899999999997532 3455554 44666666653 3444
Q ss_pred EE
Q 011761 305 LL 306 (478)
Q Consensus 305 ~l 306 (478)
++
T Consensus 116 ~~ 117 (200)
T 4h08_A 116 WA 117 (200)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 14
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=61.59 E-value=17 Score=32.58 Aligned_cols=70 Identities=13% Similarity=0.238 Sum_probs=39.0
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHHHHHh-cCCCEEEEecCCCCCCCCCCCCcccCHHhH----HHHHHHHHhcCCCEEE
Q 011761 231 SLNVPLDDGIDDESYHYLFKPIIGKVMEV-FRPGAVVLQCGADSLSGDRLGCFNLSIKGH----AECVKFMRSFNVPLLL 305 (478)
Q Consensus 231 ~vNVPL~~G~~D~~y~~~f~~iv~pv~~~-f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~----~~~~~~l~~~~~pll~ 305 (478)
.+|.... |.+-...+..+.. ++.. .+||+|||..|..=.... +....+.+.| .++++.+++.+.++++
T Consensus 46 v~n~g~~-G~~~~~~~~~~~~----~~~~~~~pd~vvi~~G~ND~~~~--~~~~~~~~~~~~~l~~~i~~~~~~~~~vil 118 (240)
T 3mil_A 46 ILQRGFK-GYTSRWALKILPE----ILKHESNIVMATIFLGANDACSA--GPQSVPLPEFIDNIRQMVSLMKSYHIRPII 118 (240)
T ss_dssp EEEEECT-TCCHHHHHHHHHH----HHHHCCCEEEEEEECCTTTTSSS--STTCCCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred EEecCcC-cccHHHHHHHHHH----HhcccCCCCEEEEEeecCcCCcc--CCCCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 3444432 3333455555543 3333 799999999998433211 1223444444 4566777777776666
Q ss_pred Ee
Q 011761 306 LG 307 (478)
Q Consensus 306 lg 307 (478)
+.
T Consensus 119 ~~ 120 (240)
T 3mil_A 119 IG 120 (240)
T ss_dssp EC
T ss_pred Ec
Confidence 64
No 15
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=58.45 E-value=8.4 Score=33.73 Aligned_cols=49 Identities=10% Similarity=0.261 Sum_probs=29.9
Q ss_pred HHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhH----HHHHHHHHhcCCCEEEEe
Q 011761 256 VMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGH----AECVKFMRSFNVPLLLLG 307 (478)
Q Consensus 256 v~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~----~~~~~~l~~~~~pll~lg 307 (478)
.+..++||+|||..|..=.... ....+.+.| .++++.+++.+.+++++.
T Consensus 69 ~~~~~~pd~vvi~~G~ND~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~vil~~ 121 (204)
T 3p94_A 69 DVINLKPKAVVILAGINDIAHN---NGVIALENVFGNLVSMAELAKANHIKVIFCS 121 (204)
T ss_dssp HTGGGCEEEEEEECCHHHHTTT---TSCCCHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHhCCCCEEEEEeecCccccc---cCCCCHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 3456899999999997533221 111344444 456677777677776663
No 16
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=57.35 E-value=2.4 Score=34.88 Aligned_cols=56 Identities=14% Similarity=0.345 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHh----HHHHHHHHHhcCCCEEEE
Q 011761 251 PIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKG----HAECVKFMRSFNVPLLLL 306 (478)
Q Consensus 251 ~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g----~~~~~~~l~~~~~pll~l 306 (478)
++|..++.+|.-++=|++++.|...+.++|.+-+...| ..+.+.+|++.++.+=++
T Consensus 38 pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl 97 (100)
T 2qsw_A 38 PIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKLRVETEVI 97 (100)
T ss_dssp CHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEES
T ss_pred hHHHHHHHHhCCCEEEEEeeceEcCCeeEEEEEEEEECCHHHHHHHHHHHHHcCCEEEEc
Confidence 67888999999999999999999999999998886554 556788888887765444
No 17
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.23.10.9
Probab=54.09 E-value=15 Score=34.58 Aligned_cols=37 Identities=14% Similarity=0.056 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEecCC-CCCCCCCCCCc
Q 011761 244 SYHYLFKPIIGKVMEVFRPGAVVLQCGA-DSLSGDRLGCF 282 (478)
Q Consensus 244 ~y~~~f~~iv~pv~~~f~Pd~IVvqaG~-D~l~gDpLG~~ 282 (478)
+.+..|..++.. ...+||+|+|..|. |...+.+++.+
T Consensus 73 ~~~~~~~~~l~~--~~~~pd~V~I~~G~ND~~~~~~~~~~ 110 (274)
T 3bzw_A 73 DVPRQAEKLKKE--HGGEVDAILVFMGTNDYNSSVPIGEW 110 (274)
T ss_dssp GHHHHHHHHHHH--HTTTCCEEEEECCHHHHHTTCCCCCS
T ss_pred HHHHHHHHHHhc--cCCCCCEEEEEEecccCcccCCCccc
Confidence 355555553321 23799999999998 55555555543
No 18
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Probab=53.14 E-value=15 Score=37.77 Aligned_cols=70 Identities=17% Similarity=0.296 Sum_probs=44.3
Q ss_pred cCCCCCCCh-HHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCC
Q 011761 234 VPLDDGIDD-ESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGY 311 (478)
Q Consensus 234 VPL~~G~~D-~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~lggGGY 311 (478)
|||-..+.. .++...|++.+ |-+++|+-..|||-.|-.++..+. .+...+-+..++..+.++++|-|||-
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~-~yi~~~~~~~iViK~GG~~l~~~~-------~~~~~~~i~~l~~~g~~vvlVhggg~ 85 (456)
T 3d2m_A 15 VPRGSHMNAPDSFVAHFREAA-PYIRQMRGTTLVAGIDGRLLEGGT-------LNKLAADIGLLSQLGIRLVLIHGAYH 85 (456)
T ss_dssp ----------CCHHHHHHHHH-HHHHHHTTCEEEEEECGGGGTSTH-------HHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred CcCcccCCchhHHHHHHHHhH-HHHHHhcCCEEEEEEChHHhcCch-------HHHHHHHHHHHHHCCCeEEEEeCCcH
Confidence 445444544 57889998876 567899999999999988876421 33444455556667777777777774
No 19
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=52.92 E-value=14 Score=31.95 Aligned_cols=64 Identities=20% Similarity=0.304 Sum_probs=36.6
Q ss_pred EecCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHh----HHHHHHHHHhcCCCEEEE
Q 011761 232 LNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKG----HAECVKFMRSFNVPLLLL 306 (478)
Q Consensus 232 vNVPL~~G~~D~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g----~~~~~~~l~~~~~pll~l 306 (478)
+|.... |.+-.+.+..+. ..+..++||+|||+.|..=. .. ..+.+. +.++++.+++.+.+++++
T Consensus 42 ~n~g~~-G~~~~~~~~~~~----~~~~~~~pd~vvi~~G~ND~----~~--~~~~~~~~~~~~~~i~~~~~~~~~vvl~ 109 (185)
T 3hp4_A 42 INASIS-GETSGGALRRLD----ALLEQYEPTHVLIELGANDG----LR--GFPVKKMQTNLTALVKKSQAANAMTALM 109 (185)
T ss_dssp EECCCT-TCCHHHHHHHHH----HHHHHHCCSEEEEECCHHHH----HT--TCCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EECCcC-CccHHHHHHHHH----HHHhhcCCCEEEEEeecccC----CC--CcCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 344432 333344444443 34556899999999996321 11 233343 455677777777777665
No 20
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=52.43 E-value=4.6 Score=33.71 Aligned_cols=56 Identities=14% Similarity=0.379 Sum_probs=46.2
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHh----HHHHHHHHHhcCCCEEEE
Q 011761 251 PIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKG----HAECVKFMRSFNVPLLLL 306 (478)
Q Consensus 251 ~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g----~~~~~~~l~~~~~pll~l 306 (478)
++|..++++|+-++=|++++.|...+.++|.+-+...| ..+.+++|++.++.+=++
T Consensus 36 PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl 95 (106)
T 3dhx_A 36 PLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHHVKVEVL 95 (106)
T ss_dssp CHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred hHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHCCCEEEEe
Confidence 57888999999999999999999999999998776554 556788888887755444
No 21
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Probab=50.71 E-value=23 Score=30.35 Aligned_cols=65 Identities=20% Similarity=0.239 Sum_probs=35.6
Q ss_pred EecCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHH----HHHHHHhcCCCEEEEe
Q 011761 232 LNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAE----CVKFMRSFNVPLLLLG 307 (478)
Q Consensus 232 vNVPL~~G~~D~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~----~~~~l~~~~~pll~lg 307 (478)
+|.... |.+-.+++..+. ..+...+||+|||+.|..=... ....+.+.|.+ +++.++ +.+++++.
T Consensus 43 ~n~g~~-G~~~~~~~~~~~----~~~~~~~pd~vvi~~G~ND~~~----~~~~~~~~~~~~l~~~i~~~~--~~~vi~~~ 111 (195)
T 1yzf_A 43 INAGMP-GDTTEDGLKRLN----KEVLIEKPDEVVIFFGANDASL----DRNITVATFRENLETMIHEIG--SEKVILIT 111 (195)
T ss_dssp EEEECT-TCCHHHHHHHHH----HHTGGGCCSEEEEECCTTTTCT----TSCCCHHHHHHHHHHHHHHHC--GGGEEEEC
T ss_pred EeCCCC-CCCHHHHHHHHH----HhhhhcCCCEEEEEeeccccCc----cCCCCHHHHHHHHHHHHHHhc--CCEEEEEc
Confidence 444433 333344444443 3345689999999999754431 12455555544 444444 56666653
No 22
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=49.64 E-value=13 Score=33.83 Aligned_cols=43 Identities=23% Similarity=0.428 Sum_probs=28.0
Q ss_pred HHhcCCCEEEEecCCCCCCCCCCCCcccCHH----hHHHHHHHHHhc--CCCEEEEe
Q 011761 257 MEVFRPGAVVLQCGADSLSGDRLGCFNLSIK----GHAECVKFMRSF--NVPLLLLG 307 (478)
Q Consensus 257 ~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~----g~~~~~~~l~~~--~~pll~lg 307 (478)
+..++||+|||..|..=.. .+.+ .+.++++.+++. +.+++++.
T Consensus 89 l~~~~pd~vvi~~G~ND~~--------~~~~~~~~~l~~~i~~l~~~~p~~~ii~~~ 137 (232)
T 1es9_A 89 LEHIRPKIVVVWVGTNNHG--------HTAEQVTGGIKAIVQLVNERQPQARVVVLG 137 (232)
T ss_dssp TTTCCCSEEEEECCTTCTT--------SCHHHHHHHHHHHHHHHHHHSTTCEEEEEC
T ss_pred cccCCCCEEEEEeecCCCC--------CCHHHHHHHHHHHHHHHHHHCCCCeEEEec
Confidence 3457999999999975332 3443 445566777664 55666663
No 23
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=49.20 E-value=4.5 Score=33.29 Aligned_cols=57 Identities=18% Similarity=0.417 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHh----HHHHHHHHHhcCCCEEEE
Q 011761 250 KPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKG----HAECVKFMRSFNVPLLLL 306 (478)
Q Consensus 250 ~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g----~~~~~~~l~~~~~pll~l 306 (478)
+++|..++++|+-++=|++++.|...+.++|.+-+...| ..+.+.+|++.++.+=++
T Consensus 37 ~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl 97 (101)
T 2qrr_A 37 APLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRENNVKVEVL 97 (101)
T ss_dssp SCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred chHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHHcCCEEEEe
Confidence 367888999999999999999999999999998876554 456778888888766554
No 24
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=47.53 E-value=35 Score=30.96 Aligned_cols=48 Identities=13% Similarity=0.274 Sum_probs=29.9
Q ss_pred HHHHhcCC-CEEEEecCCCCCCCCCCCCcccCHHhH----HHHHHHHHhc-------CCCEEEE
Q 011761 255 KVMEVFRP-GAVVLQCGADSLSGDRLGCFNLSIKGH----AECVKFMRSF-------NVPLLLL 306 (478)
Q Consensus 255 pv~~~f~P-d~IVvqaG~D~l~gDpLG~~nLs~~g~----~~~~~~l~~~-------~~pll~l 306 (478)
..+..++| |+|||..|..=.. .....+.+.| .++++.+++. +.+++++
T Consensus 94 ~~l~~~~p~d~VvI~~GtND~~----~~~~~~~~~~~~~l~~li~~ir~~~~~~~~p~~~iil~ 153 (232)
T 3dci_A 94 VALSCHMPLDLVIIMLGTNDIK----PVHGGRAEAAVSGMRRLAQIVETFIYKPREAVPKLLIV 153 (232)
T ss_dssp HHHHHHCSCSEEEEECCTTTTS----GGGTSSHHHHHHHHHHHHHHHHHCCCSSTTCCCEEEEE
T ss_pred HHHhhCCCCCEEEEEeccCCCc----cccCCCHHHHHHHHHHHHHHHHHhcccccCCCCeEEEE
Confidence 45567899 9999999965333 2233455544 4566677764 3555555
No 25
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*
Probab=47.40 E-value=21 Score=31.42 Aligned_cols=49 Identities=12% Similarity=0.186 Sum_probs=31.1
Q ss_pred HHHHhcCC-CEEEEecCCCCCCCCCCCCcccCHHh----HHHHHHHHHhcC---------CCEEEEe
Q 011761 255 KVMEVFRP-GAVVLQCGADSLSGDRLGCFNLSIKG----HAECVKFMRSFN---------VPLLLLG 307 (478)
Q Consensus 255 pv~~~f~P-d~IVvqaG~D~l~gDpLG~~nLs~~g----~~~~~~~l~~~~---------~pll~lg 307 (478)
..+..++| |+|||+.|..=.. ..+..+.+. +.++++.+++.+ .+++++.
T Consensus 76 ~~l~~~~p~d~vvi~~G~ND~~----~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~P~~~iil~~ 138 (216)
T 2q0q_A 76 SCLATHLPLDLVIIMLGTNDTK----AYFRRTPLDIALGMSVLVTQVLTSAGGVGTTYPAPKVLVVS 138 (216)
T ss_dssp HHHHHHCSCSEEEEECCTGGGS----GGGCCCHHHHHHHHHHHHHHHHTCTTTTTBCCCCCEEEEEE
T ss_pred HHHHhCCCCCEEEEEecCcccc----hhcCCCHHHHHHHHHHHHHHHHHhcccccccCCCCeEEEEe
Confidence 34556788 9999999974322 223455554 445667777766 6666663
No 26
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=45.12 E-value=17 Score=32.51 Aligned_cols=58 Identities=19% Similarity=0.189 Sum_probs=36.7
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhc--CCCEEEE
Q 011761 241 DDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF--NVPLLLL 306 (478)
Q Consensus 241 ~D~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~--~~pll~l 306 (478)
.-.+++..+.. .+..++||+|||+.|..=... ....+.+.+..+++.+++. +.+++++
T Consensus 67 ~~~~~~~~l~~----~l~~~~pd~vvi~~G~ND~~~----~~~~~~~~l~~li~~i~~~~p~~~ii~~ 126 (215)
T 2vpt_A 67 TIPQIASNINN----WLNTHNPDVVFLWIGGNDLLL----NGNLNATGLSNLIDQIFTVKPNVTLFVA 126 (215)
T ss_dssp CHHHHHHHHHH----HHHHHCCSEEEEECCHHHHHH----HCCCCHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred hHHHHHHHHHH----HhhccCCCEEEEEccccccCC----CCChhHHHHHHHHHHHHHhCCCCEEEEE
Confidence 33445544443 344689999999999743221 1234467888899998876 5556554
No 27
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=43.77 E-value=6.9 Score=34.39 Aligned_cols=52 Identities=15% Similarity=0.118 Sum_probs=29.7
Q ss_pred HHHhcCCCEEEEecCCC-CCCCCCCC---CcccCHHhHH----HHHHHHHhcCCCEEEEe
Q 011761 256 VMEVFRPGAVVLQCGAD-SLSGDRLG---CFNLSIKGHA----ECVKFMRSFNVPLLLLG 307 (478)
Q Consensus 256 v~~~f~Pd~IVvqaG~D-~l~gDpLG---~~nLs~~g~~----~~~~~l~~~~~pll~lg 307 (478)
.+...+||+|||+.|.. ...+.+.+ ....+.+.|. ++++.+++.+.+++++.
T Consensus 78 ~~~~~~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~vil~~ 137 (216)
T 3rjt_A 78 DVMALQPDYVSLMIGVNDVWRQFDMPLVVERHVGIDEYRDTLRHLVATTKPRVREMFLLS 137 (216)
T ss_dssp HTGGGCCSEEEEECCHHHHHHHHHSTTCGGGCCCHHHHHHHHHHHHHHHGGGSSEEEEEC
T ss_pred HHhhcCCCEEEEEeeccccchhhccccccccCCCHHHHHHHHHHHHHHHHhcCCeEEEEC
Confidence 34568999999999963 22111100 0133444444 45666666677777663
No 28
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=41.51 E-value=67 Score=28.33 Aligned_cols=51 Identities=12% Similarity=0.200 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeC
Q 011761 249 FKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGG 308 (478)
Q Consensus 249 f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~lgg 308 (478)
++.++. .+.+.+||+||+ +| |.. ....+.+.+.++++.+++.+.|++++.|
T Consensus 21 ~~~~~~-~~~~~~~D~vi~-~G-Dl~------~~~~~~~~~~~~~~~l~~~~~pv~~v~G 71 (228)
T 1uf3_A 21 LEKFVK-LAPDTGADAIAL-IG-NLM------PKAAKSRDYAAFFRILSEAHLPTAYVPG 71 (228)
T ss_dssp HHHHHT-HHHHHTCSEEEE-ES-CSS------CTTCCHHHHHHHHHHHGGGCSCEEEECC
T ss_pred HHHHHH-HHhhcCCCEEEE-CC-CCC------CCCCCHHHHHHHHHHHHhcCCcEEEECC
Confidence 444444 344558998764 44 322 1112345566788888888889887754
No 29
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=41.04 E-value=29 Score=34.86 Aligned_cols=69 Identities=12% Similarity=0.165 Sum_probs=38.9
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHHHHHhcCC-CEEEEecCCCCCCCCCCCCcccCHHh----HHHHHHHHHhcCCCEEE
Q 011761 231 SLNVPLDDGIDDESYHYLFKPIIGKVMEVFRP-GAVVLQCGADSLSGDRLGCFNLSIKG----HAECVKFMRSFNVPLLL 305 (478)
Q Consensus 231 ~vNVPL~~G~~D~~y~~~f~~iv~pv~~~f~P-d~IVvqaG~D~l~gDpLG~~nLs~~g----~~~~~~~l~~~~~pll~ 305 (478)
.+|.... |.+-..++.- ..+.+++..++| |+|||+.|..=... ....+.+. +.++++.+++.+.++++
T Consensus 202 v~N~Gis-G~tt~~~l~~--~rl~~~l~~~~p~d~VvI~~G~ND~~~----~~~~~~~~~~~~l~~ii~~lr~~~a~vil 274 (375)
T 2o14_A 202 VRNMASG-GQIARGFRND--GQLEAILKYIKPGDYFMLQLGINDTNP----KHKESEAEFKEVMRDMIRQVKAKGADVIL 274 (375)
T ss_dssp EEECCCT-TCCHHHHHHS--SHHHHHHTTCCTTCEEEEECCTGGGCG----GGCCCHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred EEEeccC-CCcHhhhhhc--ccHHHHHHhCCCCCEEEEEEEccCCCc----cCCCCHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 5566553 2333334320 123456678899 99999999743322 11234444 45567777777766665
Q ss_pred E
Q 011761 306 L 306 (478)
Q Consensus 306 l 306 (478)
+
T Consensus 275 v 275 (375)
T 2o14_A 275 S 275 (375)
T ss_dssp E
T ss_pred E
Confidence 5
No 30
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2
Probab=39.03 E-value=69 Score=31.14 Aligned_cols=63 Identities=16% Similarity=0.340 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCC
Q 011761 243 ESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYT 312 (478)
Q Consensus 243 ~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~lggGGY~ 312 (478)
.++...|++.+ |-+++|+=..|||-.|-.++.... ..+...+-+..+++.+.+++++.|||-.
T Consensus 8 ~~~~~~~~~a~-pyi~~~~~k~iVIKlGGs~l~~~~------~~~~~~~~i~~l~~~G~~vVlVhGgG~~ 70 (300)
T 2buf_A 8 AQVAKVLSEAL-PYIRRFVGKTLVIKYGGNAMESEE------LKAGFARDVVLMKAVGINPVVVHGGGPQ 70 (300)
T ss_dssp HHHHHHHHHHH-HHHHHHTTCEEEEEECCTTTTSSH------HHHHHHHHHHHHHHTTCEEEEEECCCHH
T ss_pred HHHHHHHHHHh-HHHHHhcCCeEEEEECchhhCCch------HHHHHHHHHHHHHHCCCeEEEEECCcHH
Confidence 36788888876 557889988999999988886531 1223344445566668888888888653
No 31
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=38.33 E-value=57 Score=31.65 Aligned_cols=58 Identities=17% Similarity=0.295 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEecCCC-CCCCCCCCCcccCHHhHHHHHHHHHhcC--CCEEEEeC
Q 011761 243 ESYHYLFKPIIGKVMEVFRPGAVVLQCGAD-SLSGDRLGCFNLSIKGHAECVKFMRSFN--VPLLLLGG 308 (478)
Q Consensus 243 ~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D-~l~gDpLG~~nLs~~g~~~~~~~l~~~~--~pll~lgg 308 (478)
++...+|+.++. .+++.+||+||+ +| | .. .....+......+.++++.+. +|++++.|
T Consensus 44 ~~~~~~l~~lv~-~~~~~~~D~vli-aG-D~l~-----d~~~~~~~~~~~~~~~l~~L~~~~pv~~i~G 104 (336)
T 2q8u_A 44 EELKKALDKVVE-EAEKREVDLILL-TG-DLLH-----SRNNPSVVALHDLLDYLKRMMRTAPVVVLPG 104 (336)
T ss_dssp HHHHHHHHHHHH-HHHHHTCSEEEE-ES-CSBS-----CSSCCCHHHHHHHHHHHHHHHHHSCEEECCC
T ss_pred HHHHHHHHHHHH-HHHHhCCCEEEE-CC-cccc-----CCCCCCHHHHHHHHHHHHHHHhcCCEEEECC
Confidence 456678888776 456779998776 44 4 22 112233443344455554443 89887754
No 32
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=37.49 E-value=61 Score=32.34 Aligned_cols=58 Identities=19% Similarity=0.302 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHh---cCCCEEEEeC
Q 011761 243 ESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRS---FNVPLLLLGG 308 (478)
Q Consensus 243 ~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~---~~~pll~lgg 308 (478)
.+...+|+.++.. +.+-+||+||+ || |.. ....-+.+.+..+.+.++. .++|++++.|
T Consensus 43 ~~~~~~l~~~v~~-~~~~~~D~Vli-aG-Dl~-----d~~~p~~~~~~~~~~~l~~L~~~~~pv~~v~G 103 (386)
T 3av0_A 43 KDIYDSFKLCIKK-ILEIKPDVVLH-SG-DLF-----NDLRPPVKALRIAMQAFKKLHENNIKVYIVAG 103 (386)
T ss_dssp HHHHHHHHHHHHH-HHTTCCSEEEE-CS-CSB-----SSSSCCHHHHHHHHHHHHHHHHTTCEEEECCC
T ss_pred HHHHHHHHHHHHH-HHHcCCCEEEE-CC-CCC-----CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEcC
Confidence 3456778877764 56789999876 44 332 2222334444445555544 4789887754
No 33
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=36.12 E-value=1e+02 Score=29.87 Aligned_cols=58 Identities=14% Similarity=0.248 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHH---HHHHHHhcCCCEEEEeC
Q 011761 243 ESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAE---CVKFMRSFNVPLLLLGG 308 (478)
Q Consensus 243 ~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~---~~~~l~~~~~pll~lgg 308 (478)
+++..+|+.++. .+.+.+||+||+ +| |... ..+-+.+.... .++.++..++|++++.|
T Consensus 23 ~~~~~~~~~~~~-~~~~~~~D~vl~-~G-Dl~d-----~~~~~~~~~~~~~~~l~~l~~~~~~v~~v~G 83 (333)
T 1ii7_A 23 EEFAEAFKNALE-IAVQENVDFILI-AG-DLFH-----SSRPSPGTLKKAIALLQIPKEHSIPVFAIEG 83 (333)
T ss_dssp HHHHHHHHHHHH-HHHHTTCSEEEE-ES-CSBS-----SSSCCHHHHHHHHHHHHHHHTTTCCEEEECC
T ss_pred HHHHHHHHHHHH-HHHhcCCCEEEE-CC-CcCC-----CCCCCHHHHHHHHHHHHHHHHCCCcEEEeCC
Confidence 456677877775 467789998776 44 3322 11223333333 44445555789888754
No 34
>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2
Probab=35.26 E-value=39 Score=32.79 Aligned_cols=66 Identities=15% Similarity=0.323 Sum_probs=44.0
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCC
Q 011761 240 IDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYT 312 (478)
Q Consensus 240 ~~D~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~lggGGY~ 312 (478)
+....+...|++.+ |-+++|+-..|||-.|-.++.... ..+.+.+-+..+++.+.+++++-|||-.
T Consensus 4 ~~~~~~~~~~~~a~-pyi~~~~~k~iViKlGGs~l~~~~------~~~~~~~~i~~l~~~G~~vViVhGgG~~ 69 (299)
T 2ap9_A 4 LPTHIKAQVLAEAL-PWLKQLHGKVVVVKYGGNAMTDDT------LRRAFAADMAFLRNCGIHPVVVHGGGPQ 69 (299)
T ss_dssp SCHHHHHHHHHHHH-HHHHHHTTCEEEEEECTHHHHSHH------HHHHHHHHHHHHHTTTCEEEEEECCSHH
T ss_pred CChhhHHHHHHHHH-HHHHHhCCCeEEEEECchhhCCch------HHHHHHHHHHHHHHCCCcEEEEECCcHH
Confidence 45678888998876 567889989999999966654320 1223344445555667777777777653
No 35
>3skv_A SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydrolase fold, trans; 2.49A {Streptomyces SP}
Probab=33.32 E-value=40 Score=34.25 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=32.9
Q ss_pred HHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhc--CCCEEEEe
Q 011761 253 IGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF--NVPLLLLG 307 (478)
Q Consensus 253 v~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~--~~pll~lg 307 (478)
+..++..++||+|||.+|..=...+ . ...--.+.+..+++.+++. +.||+++.
T Consensus 236 ~~~~l~~~~pdlVvI~lGtND~~~~-~-~~~~~~~~l~~li~~ir~~~P~a~Illv~ 290 (385)
T 3skv_A 236 FARLIRDLPADLISLRVGTSNFMDG-D-GFVDFPANLVGFVQIIRERHPLTPIVLGS 290 (385)
T ss_dssp HHHHHHHSCCSEEEEEESHHHHTTT-C-CTTTHHHHHHHHHHHHHTTCSSSCEEEEE
T ss_pred HHHHHhccCCCEEEEEeeccCCCCC-C-CHHHHHHHHHHHHHHHHHHCCCCcEEEEc
Confidence 3345567899999999997543322 0 1111234556678888775 56777764
No 36
>1fxw_F Alpha2, platelet-activating factor acetylhydrolase IB beta subunit; alpha beta hydrolase fold; 2.10A {Bos taurus} SCOP: c.23.10.3 PDB: 1vyh_A
Probab=32.04 E-value=32 Score=31.10 Aligned_cols=42 Identities=14% Similarity=0.336 Sum_probs=27.5
Q ss_pred HHhcCCCEEEEecCCCCCCCCCCCCcccCHHh----HHHHHHHHHhc--CCCEEEE
Q 011761 257 MEVFRPGAVVLQCGADSLSGDRLGCFNLSIKG----HAECVKFMRSF--NVPLLLL 306 (478)
Q Consensus 257 ~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g----~~~~~~~l~~~--~~pll~l 306 (478)
+..++||+|||..|..=. | .+.+. +.++++.+++. +.+++++
T Consensus 90 l~~~~pd~vvi~~G~ND~-----~---~~~~~~~~~l~~~i~~l~~~~p~~~iil~ 137 (229)
T 1fxw_F 90 LENIKPKVIVVWVGTNNH-----E---NTAEEVAGGIEAIVQLINTRQPQAKIIVL 137 (229)
T ss_dssp TSSCCCSEEEEECCTTCT-----T---SCHHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred cccCCCCEEEEEEecCCC-----C---CCHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 346899999999997544 2 34444 44566667654 5566665
No 37
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=31.45 E-value=54 Score=34.72 Aligned_cols=56 Identities=18% Similarity=0.275 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhcCCCEEEEecC-CCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCc
Q 011761 248 LFKPIIGKVMEVFRPGAVVLQCG-ADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIR 314 (478)
Q Consensus 248 ~f~~iv~pv~~~f~Pd~IVvqaG-~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~lggGGY~~~ 314 (478)
-+...|..+.+.|+|++|+|... .-...||.+. .+++.++. ++||+.+--.||...
T Consensus 72 kL~~aI~~~~~~~~P~~I~V~tTC~~elIGdDi~----------~v~~~~~~-~~pVi~v~tpgf~g~ 128 (525)
T 3aek_B 72 LLKDALAAAHARYKPQAMAVALTCTAELLQDDPN----------GISRALNL-PVPVVPLELPSYSRK 128 (525)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEECTTGGGSCCCHH----------HHHHHHTC-SSCEEECCCCTTTCC
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcHHHHhcccHH----------HHHHHhcC-CCCEEEEECCCcCCc
Confidence 34456667788899997766655 6666676532 23444433 777777777777754
No 38
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=30.17 E-value=50 Score=29.36 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=22.6
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 011761 231 SLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCG 270 (478)
Q Consensus 231 ~vNVPL~~G~~D~~y~~~f~~iv~pv~~~f~Pd~IVvqaG 270 (478)
++|| .|.+......-.+ .|..++++.+||+|.+|=-
T Consensus 18 s~Ni---~g~~~~~~~~r~~-~i~~~i~~~~pDIi~LQEv 53 (256)
T 4fva_A 18 SWNI---DGLDGRSLLTRMK-AVAHIVKNVNPDILFLQEV 53 (256)
T ss_dssp EEEC---CTTCCTTHHHHHH-HHHHHHHHHCCSEEEEEEE
T ss_pred EEec---CCCCCcCHHHHHH-HHHHHHHHcCCCEEEEEec
Confidence 4565 3444334444443 3456788999999999963
No 39
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation, SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A {Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A* 1deo_A* 1pp4_A* 3c1u_A*
Probab=27.68 E-value=1.4e+02 Score=27.15 Aligned_cols=40 Identities=15% Similarity=0.208 Sum_probs=22.8
Q ss_pred EecCCCCCCChHHHHHHHHHHHHHHHHhcCC-CEEEEecCCCCC
Q 011761 232 LNVPLDDGIDDESYHYLFKPIIGKVMEVFRP-GAVVLQCGADSL 274 (478)
Q Consensus 232 vNVPL~~G~~D~~y~~~f~~iv~pv~~~f~P-d~IVvqaG~D~l 274 (478)
+|..+.. -+-..++.- ..+..++...+| |+|||+.|..=.
T Consensus 36 ~N~gi~G-~tt~~~~~~--~r~~~~l~~~~~~d~ViI~~G~ND~ 76 (233)
T 1k7c_A 36 VNDAVAG-RSARSYTRE--GRFENIADVVTAGDYVIVEFGHNDG 76 (233)
T ss_dssp EECCCTT-CCHHHHHHT--THHHHHHHHCCTTCEEEECCCTTSC
T ss_pred EecccCC-ccHHHHHHc--ccHHHHHhhCCCCCEEEEEccCCCC
Confidence 4554433 233445431 123455566666 999999998543
No 40
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=27.04 E-value=65 Score=30.96 Aligned_cols=31 Identities=16% Similarity=0.110 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Q 011761 245 YHYLFKPIIGKVMEVFRPGAVVLQCGADSLS 275 (478)
Q Consensus 245 y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~ 275 (478)
+...+...|..++++++|++||.-.|.|.|.
T Consensus 132 ~~~~l~~~l~~~ir~~~PdvV~t~~~~d~Hp 162 (273)
T 3dff_A 132 LVGEVADDIRSIIDEFDPTLVVTCAAIGEHP 162 (273)
T ss_dssp HHHHHHHHHHHHHHHHCCSEEEEECCTTCCH
T ss_pred hHHHHHHHHHHHHHHcCCCEEEECCCCCCCh
Confidence 4455556677889999999999987766554
No 41
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=26.45 E-value=66 Score=27.88 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=14.1
Q ss_pred HHHHHHhcCCCEEEEec
Q 011761 253 IGKVMEVFRPGAVVLQC 269 (478)
Q Consensus 253 v~pv~~~f~Pd~IVvqa 269 (478)
|..++++.+||+|.+|=
T Consensus 26 i~~~i~~~~pDIi~LQE 42 (250)
T 4f1h_A 26 LCSYLALYTPDVVFLQE 42 (250)
T ss_dssp HHHHHHHHCCSEEEEEE
T ss_pred HHHHHHHcCCCEEEEEe
Confidence 44677889999999995
No 42
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=26.42 E-value=41 Score=30.20 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=30.7
Q ss_pred cCCCEEEEecCC-CCCCCCCCCCccc-CH----HhHHHHHHHHHhc--CCCEEEEe
Q 011761 260 FRPGAVVLQCGA-DSLSGDRLGCFNL-SI----KGHAECVKFMRSF--NVPLLLLG 307 (478)
Q Consensus 260 f~Pd~IVvqaG~-D~l~gDpLG~~nL-s~----~g~~~~~~~l~~~--~~pll~lg 307 (478)
.+||+|||+.|. |...+-+++.+.- +. ..+.++++.++.. +.+++++.
T Consensus 81 ~~pd~Vii~~G~ND~~~~~~~~~~~~~~~~~f~~~l~~li~~l~~~~P~~~iil~~ 136 (232)
T 3dc7_A 81 EDADFIAVFGGVNDYGRDQPLGQYGDCDMTTFYGALMMLLTGLQTNWPTVPKLFIS 136 (232)
T ss_dssp TTCSEEEEECCHHHHHTTCCCCCTTCCSTTSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCCCEEEEEEeccccccCcCCccccccchHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 499999999997 3444444444321 11 1556678888765 67887753
No 43
>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus}
Probab=25.76 E-value=75 Score=30.44 Aligned_cols=32 Identities=9% Similarity=0.041 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEecCCCCCCC
Q 011761 245 YHYLFKPIIGKVMEVFRPGAVVLQCGADSLSG 276 (478)
Q Consensus 245 y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~g 276 (478)
+...+...|..++++++|++|+.-.|.|.|.+
T Consensus 129 ~~~~~~~~l~~~ir~~~PdvV~t~~~~d~HpD 160 (270)
T 3dfi_A 129 LVAAIREDIESMIAECDPTLVLTCVAIGKHPD 160 (270)
T ss_dssp HHHHHHHHHHHHHHHHCCSEEEEECCTTCCHH
T ss_pred hHHHHHHHHHHHHHHcCCCEEEeCCCCCCChh
Confidence 44455566778899999999999877666543
No 44
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}
Probab=25.47 E-value=39 Score=32.82 Aligned_cols=63 Identities=13% Similarity=0.274 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCC
Q 011761 242 DESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGY 311 (478)
Q Consensus 242 D~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~lggGGY 311 (478)
+..+...|++.+ |-+++|+-..|||-.|--++... + ..+.+.+-+..+++.+.+++++.|||-
T Consensus 17 ~~~~~~~~~~a~-pyi~~~~~k~iVIKlGGs~l~~~-----~-~~~~~~~~i~~l~~~G~~vViVhGgG~ 79 (298)
T 2rd5_A 17 PDYRVEILSESL-PFIQKFRGKTIVVKYGGAAMTSP-----E-LKSSVVSDLVLLACVGLRPILVHGGGP 79 (298)
T ss_dssp -CHHHHHHHHTH-HHHHHTTTCEEEEEECTHHHHCH-----H-HHHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred hHHHHHHHHHHH-HHHHHhcCCEEEEEECchhhCCh-----h-HHHHHHHHHHHHHHCCCCEEEEECCcH
Confidence 356888898876 56789999999999996655421 0 112233344455566777887777754
No 45
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=25.18 E-value=70 Score=28.30 Aligned_cols=17 Identities=24% Similarity=0.505 Sum_probs=13.9
Q ss_pred HHHHHHhcCCCEEEEec
Q 011761 253 IGKVMEVFRPGAVVLQC 269 (478)
Q Consensus 253 v~pv~~~f~Pd~IVvqa 269 (478)
|..++++.+||+|.+|=
T Consensus 32 i~~~i~~~~pDIi~LQE 48 (256)
T 4gz1_A 32 VCSCLALYSPDVVFLQE 48 (256)
T ss_dssp HHHHHHHHCCSEEEEEE
T ss_pred HHHHHHHcCCCEEEEEc
Confidence 44577889999999994
No 46
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=24.98 E-value=1.4e+02 Score=30.80 Aligned_cols=47 Identities=17% Similarity=0.223 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHH
Q 011761 243 ESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMR 297 (478)
Q Consensus 243 ~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~ 297 (478)
.+....|+.++. .+.+.+||+||+ +| |.. -...-+.+....+.+.++
T Consensus 54 ~d~~~~l~~ll~-~~~~~~~D~Vli-aG-Dlf-----d~~~~~~~~~~~~~~~L~ 100 (431)
T 3t1i_A 54 NDTFVTLDEILR-LAQENEVDFILL-GG-DLF-----HENKPSRKTLHTCLELLR 100 (431)
T ss_dssp THHHHHHHHHHH-HHHHTTCSEEEE-CS-CCB-----SSSSCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH-HHhhcCCCEEEE-cC-ccc-----cCCCCCHHHHHHHHHHHH
Confidence 345667777775 456799999998 33 433 233345555666666555
No 47
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=24.96 E-value=36 Score=30.86 Aligned_cols=21 Identities=38% Similarity=0.426 Sum_probs=16.0
Q ss_pred HHhc-CCcEEEEeccccCCccc
Q 011761 171 LLKQ-HERVLYVDIDIHHGDGV 191 (478)
Q Consensus 171 ll~~-~~RVl~IDiDvHHGDGt 191 (478)
|.+. .+|||+||+|..+|+=+
T Consensus 29 la~~~g~~VlliD~D~~~~~l~ 50 (245)
T 3ea0_A 29 LSQEPDIHVLAVDISLPFGDLD 50 (245)
T ss_dssp HTTSTTCCEEEEECCTTTCCGG
T ss_pred HHhCcCCCEEEEECCCCCCCHH
Confidence 3344 78999999999877643
No 48
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=24.88 E-value=1.2e+02 Score=30.23 Aligned_cols=57 Identities=23% Similarity=0.275 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCC-CCcccCHHhHHHH---HHHHHhcCCCEEEEeC
Q 011761 243 ESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRL-GCFNLSIKGHAEC---VKFMRSFNVPLLLLGG 308 (478)
Q Consensus 243 ~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpL-G~~nLs~~g~~~~---~~~l~~~~~pll~lgg 308 (478)
.++..+|+.++. ++.+.+||+||+ +| |-. ...+.+...+..+ ++.|... +|++++.|
T Consensus 26 ~~~~~~l~~l~~-~~~~~~~D~vli-aG------Dl~hd~~~~~~~~~~~~~~~l~~l~~~-~~v~~i~G 86 (379)
T 3tho_B 26 EELKKALDKVVE-EAEKREVDLILL-TG------DLLHSRNNPSVVALHDLLDYLKRMMRT-APVVVLPG 86 (379)
T ss_dssp HHHHHHHHHHHH-HHHHHTCSEEEE-CS------CCBSCSSSCCHHHHHHHHHHHHHHHHH-SCEEECCC
T ss_pred HHHHHHHHHHHH-HHHhcCCCEEEE-CC------CccccCCCCCHHHHHHHHHHHHHHHhC-CCEEEEcC
Confidence 457777877664 567889999887 33 432 2223344444444 4444445 88887754
No 49
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=24.38 E-value=1.1e+02 Score=27.65 Aligned_cols=47 Identities=9% Similarity=0.231 Sum_probs=30.3
Q ss_pred HHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCC---CEEEEeCCCCC
Q 011761 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNV---PLLLLGGGGYT 312 (478)
Q Consensus 255 pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~---pll~lggGGY~ 312 (478)
..+++++||+|.+++-.. -+.....+.++.+++.+. ..+++||.+.+
T Consensus 133 ~~~~~~~~d~v~lS~~~~-----------~~~~~~~~~i~~l~~~~~~~~~~v~vGG~~~~ 182 (210)
T 1y80_A 133 EAVKKYQPDIVGMSALLT-----------TTMMNMKSTIDALIAAGLRDRVKVIVGGAPLS 182 (210)
T ss_dssp HHHHHHCCSEEEEECCSG-----------GGTHHHHHHHHHHHHTTCGGGCEEEEESTTCC
T ss_pred HHHHHcCCCEEEEecccc-----------ccHHHHHHHHHHHHhcCCCCCCeEEEECCCCC
Confidence 456788999999998532 134556778888887643 23445544443
No 50
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=24.24 E-value=67 Score=33.72 Aligned_cols=55 Identities=20% Similarity=0.172 Sum_probs=38.9
Q ss_pred HHHHHHHHhcCCCEEEEecCC-CCCCCCCCCCcccCHHhHHHHHHHHH-hcCCCEEEEeCCCCCCcc
Q 011761 251 PIIGKVMEVFRPGAVVLQCGA-DSLSGDRLGCFNLSIKGHAECVKFMR-SFNVPLLLLGGGGYTIRN 315 (478)
Q Consensus 251 ~iv~pv~~~f~Pd~IVvqaG~-D~l~gDpLG~~nLs~~g~~~~~~~l~-~~~~pll~lggGGY~~~~ 315 (478)
..|..+.+.|+|++|+|...+ -...||.+. .+++.++ ..++||+.+--.||....
T Consensus 78 ~~I~~~~~~~~P~~I~V~tTC~~e~IGdDi~----------~v~~~~~~~~g~pVi~v~tpgf~g~~ 134 (511)
T 2xdq_B 78 DNIIRKDTEEHPDLIVLTPTCTSSILQEDLQ----------NFVRRASLSTTADVLLADVNHYRVNE 134 (511)
T ss_dssp HHHHHHHHHHCCSEEEEECCHHHHTTCCCHH----------HHHHHHHHHCSSEEEECCCCTTTCCH
T ss_pred HHHHHHHHhcCCCEEEEeCCcHHHHhccCHH----------HHHHHhhhccCCCEEEeeCCCcccch
Confidence 445566778999999888775 666666432 2444443 468999999999998754
No 51
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=24.24 E-value=59 Score=29.29 Aligned_cols=19 Identities=32% Similarity=0.364 Sum_probs=15.1
Q ss_pred HHhcCCcEEEEeccccCCc
Q 011761 171 LLKQHERVLYVDIDIHHGD 189 (478)
Q Consensus 171 ll~~~~RVl~IDiDvHHGD 189 (478)
|.+...||++||.|..+|+
T Consensus 27 la~~g~~VlliD~D~~~~~ 45 (237)
T 1g3q_A 27 LGDRGRKVLAVDGDLTMAN 45 (237)
T ss_dssp HHHTTCCEEEEECCTTSCC
T ss_pred HHhcCCeEEEEeCCCCCCC
Confidence 3345689999999998775
No 52
>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2
Probab=23.89 E-value=68 Score=30.71 Aligned_cols=62 Identities=13% Similarity=0.293 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCC
Q 011761 244 SYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYT 312 (478)
Q Consensus 244 ~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~~pll~lggGGY~ 312 (478)
.+...|++.+ |-+++|+-..||+-.|--++... + ..+.+.+-+..+++.+.+++++.|||-.
T Consensus 4 ~~~~~~~~~~-pyi~~~~~~~iViKlGGs~l~~~-----~-~~~~~~~~i~~l~~~G~~vVlVhGgG~~ 65 (282)
T 2bty_A 4 DTVNVLLEAL-PYIKEFYGKTFVIKFGGSAMKQE-----N-AKKAFIQDIILLKYTGIKPIIVHGGGPA 65 (282)
T ss_dssp HHHHHHHHHH-HHHHHHTTCEEEEEECSHHHHSH-----H-HHHHHHHHHHHHHHTTCEEEEEECCSHH
T ss_pred HHHHHHHHHH-HHHHHhcCCeEEEEECchhhCCh-----h-HHHHHHHHHHHHHHCCCcEEEEECCcHH
Confidence 5677787776 56789998899999996655421 0 0122333344455567777777777653
No 53
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Probab=23.51 E-value=2.4e+02 Score=26.55 Aligned_cols=65 Identities=12% Similarity=0.184 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHhcC--CCEEEEecCCCCCCCCCCCCcccC--HHhHHHHHHHHHhcCC-CEEEEeCCCCCC
Q 011761 244 SYHYLFKPIIGKVMEVFR--PGAVVLQCGADSLSGDRLGCFNLS--IKGHAECVKFMRSFNV-PLLLLGGGGYTI 313 (478)
Q Consensus 244 ~y~~~f~~iv~pv~~~f~--Pd~IVvqaG~D~l~gDpLG~~nLs--~~g~~~~~~~l~~~~~-pll~lggGGY~~ 313 (478)
.+...+...+..++++|+ |+.|++..+ ..|.+.+.-+ .+.|.++++.+++.+. .+|++++.+|+.
T Consensus 94 ~~~~~~~~~w~~ia~~y~~~~~~v~~el~-----NEP~~~~~~~~~~~~~~~~~~~IR~~d~~~~i~v~~~~~~~ 163 (294)
T 2whl_A 94 SDLNRAVDYWIEMKDALIGKEDTVIINIA-----NEWYGSWDGSAWADGYIDVIPKLRDAGLTHTLMVDAAGWGQ 163 (294)
T ss_dssp HHHHHHHHHHHHTHHHHTTCTTTEEEECC-----TTCCCSSCHHHHHHHHHHHHHHHHHTTCCSCEEEECBTTTT
T ss_pred hhHHHHHHHHHHHHHHHcCCCCeEEEEec-----CCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcCCCCCC
Confidence 455566666677778885 445555443 4566543211 3456678888888743 455666556654
No 54
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}
Probab=22.95 E-value=2.3e+02 Score=28.13 Aligned_cols=65 Identities=11% Similarity=0.171 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHhcC--CCEEEEecCCCCCCCCCCCCcccC--HHhHHHHHHHHHhcCC-CEEEEeCCCCCC
Q 011761 244 SYHYLFKPIIGKVMEVFR--PGAVVLQCGADSLSGDRLGCFNLS--IKGHAECVKFMRSFNV-PLLLLGGGGYTI 313 (478)
Q Consensus 244 ~y~~~f~~iv~pv~~~f~--Pd~IVvqaG~D~l~gDpLG~~nLs--~~g~~~~~~~l~~~~~-pll~lggGGY~~ 313 (478)
.+...|...+..++++|+ |+.|++..+ ..|.+.+.-+ .+.+.++++.+++.+. .+|++++-+|+.
T Consensus 117 ~~~~~~~~~w~~iA~ryk~~~~~Vi~el~-----NEP~~~~~~~~w~~~~~~~i~~IR~~dp~~~Iiv~g~~w~~ 186 (345)
T 3jug_A 117 SDLDRAVDYWIEMKDALIGKEDTVIINIA-----NEWYGSWDGAAWADGYIDVIPKLRDAGLTHTLMVDAAGWGQ 186 (345)
T ss_dssp HHHHHHHHHHHHTHHHHTTCTTTEEEECC-----TTCCCSSCHHHHHHHHHHHHHHHHHTTCCSCEEEECBTTTT
T ss_pred HHHHHHHHHHHHHHHHHcCCCCeEEEEec-----CCCCCCCCHHHHHHHHHHHHHHHHhhCCCCEEEEeCCCccc
Confidence 355666666677777774 456666655 5566632211 2344567888888753 467777777764
No 55
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=22.45 E-value=66 Score=29.31 Aligned_cols=19 Identities=16% Similarity=0.342 Sum_probs=15.2
Q ss_pred HHhcCCcEEEEeccccCCc
Q 011761 171 LLKQHERVLYVDIDIHHGD 189 (478)
Q Consensus 171 ll~~~~RVl~IDiDvHHGD 189 (478)
|.+..+||++||.|..+|+
T Consensus 27 la~~g~~VlliD~D~~~~~ 45 (260)
T 3q9l_A 27 LAQKGKKTVVIDFAIGLRN 45 (260)
T ss_dssp HHHTTCCEEEEECCCSSCC
T ss_pred HHhCCCcEEEEECCCCCCC
Confidence 3355789999999997776
No 56
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=21.61 E-value=1.5e+02 Score=30.35 Aligned_cols=69 Identities=7% Similarity=0.049 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhcCCCEEEEecC-CCCCCCCCCCCcccCHHhHHHHHHHHH-hcCCCEEEEeCCCCCCcchhhhHHHHHhh
Q 011761 249 FKPIIGKVMEVFRPGAVVLQCG-ADSLSGDRLGCFNLSIKGHAECVKFMR-SFNVPLLLLGGGGYTIRNVARCWCYETGV 326 (478)
Q Consensus 249 f~~iv~pv~~~f~Pd~IVvqaG-~D~l~gDpLG~~nLs~~g~~~~~~~l~-~~~~pll~lggGGY~~~~var~w~~~t~~ 326 (478)
++..|..+.+.|+|++|+|... .-.+.||. ...+++.++ ..++|++.+--.||... ....|......
T Consensus 85 L~~~i~~~~~~~~P~~I~v~~TC~~~iIGdD----------i~~v~~~~~~~~~ipVi~v~~~Gf~~~-~~~G~~~a~~a 153 (460)
T 2xdq_A 85 LKRLCLEIKRDRNPSVIVWIGTCTTEIIKMD----------LEGLAPKLEAEIGIPIVVARANGLDYA-FTQGEDTVLAA 153 (460)
T ss_dssp HHHHHHHHHHHHCCSEEEEEECHHHHHTTCC----------HHHHHHHHHHHHSSCEEEEECCTTTCC-TTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCCHHHHHhhC----------HHHHHHHHhhccCCcEEEEecCCcccc-HHHHHHHHHHH
Confidence 3567778889999999877654 23344443 233555554 46999999999999863 44454443333
Q ss_pred Hh
Q 011761 327 AL 328 (478)
Q Consensus 327 ll 328 (478)
++
T Consensus 154 l~ 155 (460)
T 2xdq_A 154 MA 155 (460)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 57
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A
Probab=20.99 E-value=44 Score=29.66 Aligned_cols=46 Identities=20% Similarity=0.237 Sum_probs=26.5
Q ss_pred cCCCEEEEecCCCCCCCCCCCCcccCHHhH----HHHHHHHHhcCCCEEEEe
Q 011761 260 FRPGAVVLQCGADSLSGDRLGCFNLSIKGH----AECVKFMRSFNVPLLLLG 307 (478)
Q Consensus 260 f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~----~~~~~~l~~~~~pll~lg 307 (478)
.+||+|||+.|..=... ..+....+.+.| .++++.+++. .+++++.
T Consensus 87 ~~pd~vvi~~G~ND~~~-~~~~~~~~~~~~~~~l~~li~~l~~~-~~iil~~ 136 (218)
T 1vjg_A 87 EYNSLVVFSFGLNDTTL-ENGKPRVSIAETIKNTREILTQAKKL-YPVLMIS 136 (218)
T ss_dssp TSEEEEEEECCHHHHCE-ETTEESSCHHHHHHHHHHHHHHHHHH-SCEEEEC
T ss_pred CCCCEEEEEecCCcchh-hcccccCCHHHHHHHHHHHHHHHHHh-CcEEEEC
Confidence 59999999999732210 000113444444 4566666666 7777663
No 58
>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}
Probab=20.95 E-value=1.1e+02 Score=28.76 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=34.9
Q ss_pred CCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHh---cCCCEEEEeCCCCC
Q 011761 261 RPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRS---FNVPLLLLGGGGYT 312 (478)
Q Consensus 261 ~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~---~~~pll~lggGGY~ 312 (478)
++..||+-.|--++..+ +...+..+-...+++.+.. .+.++++|.|||--
T Consensus 11 ~~~~iViKiGGs~l~~~--~~~~~~~~~i~~~a~~I~~l~~~G~~vViV~GgG~~ 63 (255)
T 2jjx_A 11 PYKRVLIKLSGGALADQ--TGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNI 63 (255)
T ss_dssp BCSEEEEEECGGGTSCS--SSCSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTT
T ss_pred cCCEEEEEECHHHhCCC--CCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECchHH
Confidence 56789999998888764 4455666666666665544 46677777777654
No 59
>2wao_A Endoglucanase E; plant cell WALL degradation, carbohydrate metabolism, polysaccharide degradation, esterase, hydrolase, cellulases; HET: BGC; 1.80A {Clostridium thermocellum} PDB: 2wab_A*
Probab=20.87 E-value=50 Score=32.24 Aligned_cols=48 Identities=13% Similarity=0.089 Sum_probs=29.1
Q ss_pred HhcCCCEEEEecCC-CCCCCCCCCCcccCHHhHHHHHHHHHhc--CCCEEEEe
Q 011761 258 EVFRPGAVVLQCGA-DSLSGDRLGCFNLSIKGHAECVKFMRSF--NVPLLLLG 307 (478)
Q Consensus 258 ~~f~Pd~IVvqaG~-D~l~gDpLG~~nLs~~g~~~~~~~l~~~--~~pll~lg 307 (478)
..++||+|||..|. |...+.+ ...--.+.|..+++.+++. +.+|+++.
T Consensus 210 ~~~~PdlVvI~lGtND~~~~~~--~~~~~~~~l~~li~~ir~~~p~a~Iil~~ 260 (341)
T 2wao_A 210 SKYVPQVVVINLGTNDFSTSFA--DKTKFVTAYKNLISEVRRNYPDAHIFCCV 260 (341)
T ss_dssp GGCCCSEEEEECCHHHHSSSCC--CHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred cCCCCCEEEEeCccccCCCCCC--CHHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 36899999999997 3433221 0011124566677777764 45666664
No 60
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=20.75 E-value=76 Score=29.16 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=14.3
Q ss_pred hcCCcEEEEeccccCCc
Q 011761 173 KQHERVLYVDIDIHHGD 189 (478)
Q Consensus 173 ~~~~RVl~IDiDvHHGD 189 (478)
+...||++||.|.+.|+
T Consensus 29 ~~g~~VlliD~D~~~~~ 45 (263)
T 1hyq_A 29 QLGHDVTIVDADITMAN 45 (263)
T ss_dssp HTTCCEEEEECCCSSSS
T ss_pred hCCCcEEEEECCCCCCC
Confidence 45689999999998776
No 61
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=20.69 E-value=98 Score=27.25 Aligned_cols=35 Identities=3% Similarity=-0.114 Sum_probs=24.9
Q ss_pred HHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcC
Q 011761 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFN 300 (478)
Q Consensus 255 pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~~~ 300 (478)
..+.+++||+|.+++=.. -+.....++++.|++.+
T Consensus 63 ~aa~~~~~diV~lS~~~~-----------~~~~~~~~~i~~L~~~g 97 (161)
T 2yxb_A 63 MAAVQEDVDVIGVSILNG-----------AHLHLMKRLMAKLRELG 97 (161)
T ss_dssp HHHHHTTCSEEEEEESSS-----------CHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCCEEEEEeech-----------hhHHHHHHHHHHHHhcC
Confidence 467789999999987532 23445567888888764
No 62
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*
Probab=20.04 E-value=2.3e+02 Score=29.15 Aligned_cols=48 Identities=17% Similarity=0.134 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHh
Q 011761 243 ESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRS 298 (478)
Q Consensus 243 ~~y~~~f~~iv~pv~~~f~Pd~IVvqaG~D~l~gDpLG~~nLs~~g~~~~~~~l~~ 298 (478)
.+....|+.++.. +.+.+||+||+ .||=.-...-+.+....+.+.|+.
T Consensus 35 ~d~~~~l~~lv~~-~~~~~~D~Vli-------aGDLfd~~~p~~~~~~~~~~~lr~ 82 (417)
T 4fbw_A 35 NDSFVSFNEILEI-ARERDVDMILL-------GGDIFHDNKPSRKALYQALRSLRL 82 (417)
T ss_dssp THHHHHHHHHHHH-HHHTTCSEEEE-------CSCCBSSSSCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH-HHhcCCCEEEE-------cCccccCCCCCHHHHHHHHHHHHH
Confidence 3456677777764 56689999987 345433444566666666666544
Done!