Query 011762
Match_columns 478
No_of_seqs 373 out of 3038
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 04:57:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011762.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011762hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 6.3E-68 1.4E-72 562.1 31.6 384 44-468 13-437 (571)
2 PHA02713 hypothetical protein; 100.0 4.4E-62 9.5E-67 519.3 29.0 366 44-468 2-408 (557)
3 PHA02790 Kelch-like protein; P 100.0 7.3E-58 1.6E-62 480.1 30.8 374 58-468 13-456 (480)
4 PHA03098 kelch-like protein; P 100.0 2.3E-54 5E-59 461.7 32.7 352 64-442 6-436 (534)
5 KOG4350 Uncharacterized conser 100.0 2.2E-32 4.7E-37 262.8 10.7 224 51-290 28-255 (620)
6 KOG2075 Topoisomerase TOP1-int 99.9 1.7E-24 3.6E-29 213.7 14.5 223 55-288 102-340 (521)
7 KOG4682 Uncharacterized conser 99.8 9.8E-20 2.1E-24 176.1 12.0 181 60-248 62-247 (488)
8 PF07707 BACK: BTB And C-termi 99.7 1.1E-18 2.3E-23 144.8 5.9 103 172-283 1-103 (103)
9 KOG4591 Uncharacterized conser 99.7 2.2E-18 4.7E-23 152.0 7.6 172 48-231 47-224 (280)
10 PF00651 BTB: BTB/POZ domain; 99.7 1.6E-18 3.4E-23 145.7 5.8 104 58-164 1-109 (111)
11 KOG4441 Proteins containing BT 99.7 4.9E-16 1.1E-20 165.8 17.6 118 327-469 333-486 (571)
12 smart00875 BACK BTB And C-term 99.7 5.4E-16 1.2E-20 127.8 10.3 99 172-280 1-99 (101)
13 smart00225 BTB Broad-Complex, 99.6 2.2E-15 4.7E-20 120.5 8.5 88 69-159 1-90 (90)
14 PHA02713 hypothetical protein; 99.5 4E-14 8.7E-19 151.5 9.6 116 327-467 304-472 (557)
15 PHA02790 Kelch-like protein; P 99.5 8.6E-14 1.9E-18 146.7 9.5 106 327-444 319-447 (480)
16 KOG0783 Uncharacterized conser 99.5 6.8E-14 1.5E-18 145.9 6.9 144 67-218 712-861 (1267)
17 PHA03098 kelch-like protein; P 99.3 2.2E-11 4.7E-16 130.6 16.6 247 166-467 72-398 (534)
18 TIGR03547 muta_rot_YjhT mutatr 99.2 3.6E-11 7.9E-16 121.7 10.1 108 336-468 168-331 (346)
19 PLN02153 epithiospecifier prot 99.1 6.6E-10 1.4E-14 112.3 10.3 118 327-468 86-261 (341)
20 PRK14131 N-acetylneuraminic ac 99.1 4.6E-10 1E-14 114.9 9.2 109 336-468 189-353 (376)
21 TIGR03547 muta_rot_YjhT mutatr 99.0 1.3E-09 2.8E-14 110.4 9.7 116 327-467 18-209 (346)
22 PLN02193 nitrile-specifier pro 99.0 2.2E-09 4.7E-14 113.1 10.3 117 327-468 229-387 (470)
23 TIGR03548 mutarot_permut cycli 98.9 3.2E-09 6.8E-14 106.5 9.7 118 327-468 124-313 (323)
24 TIGR03548 mutarot_permut cycli 98.9 3.6E-09 7.7E-14 106.1 10.0 121 327-468 73-233 (323)
25 PLN02153 epithiospecifier prot 98.9 7.7E-09 1.7E-13 104.5 11.0 97 336-442 50-192 (341)
26 PLN02193 nitrile-specifier pro 98.8 2.3E-08 5.1E-13 105.3 11.0 97 336-442 193-327 (470)
27 PRK14131 N-acetylneuraminic ac 98.7 5.2E-08 1.1E-12 99.8 9.8 117 327-467 39-230 (376)
28 KOG4693 Uncharacterized conser 98.4 7.9E-07 1.7E-11 83.1 7.7 47 327-377 89-148 (392)
29 PF13964 Kelch_6: Kelch motif 98.3 1.1E-06 2.3E-11 62.4 4.1 47 354-434 1-50 (50)
30 KOG0783 Uncharacterized conser 98.2 3.6E-06 7.9E-11 89.2 7.2 97 64-160 555-683 (1267)
31 KOG0511 Ankyrin repeat protein 98.1 3.4E-06 7.5E-11 82.2 5.3 140 70-217 295-443 (516)
32 PF01344 Kelch_1: Kelch motif; 98.1 3.4E-06 7.5E-11 58.9 3.2 44 354-431 1-47 (47)
33 KOG0379 Kelch repeat-containin 97.9 4.5E-05 9.8E-10 80.6 9.8 105 328-441 124-273 (482)
34 KOG2716 Polymerase delta-inter 97.8 7.9E-05 1.7E-09 69.6 8.5 92 70-164 7-103 (230)
35 KOG2838 Uncharacterized conser 97.7 1.1E-05 2.4E-10 75.5 1.7 97 77-175 263-396 (401)
36 KOG2838 Uncharacterized conser 97.5 6.9E-05 1.5E-09 70.3 3.5 101 51-151 114-218 (401)
37 PF02214 BTB_2: BTB/POZ domain 97.5 9.8E-05 2.1E-09 59.8 3.9 86 70-158 1-94 (94)
38 KOG0379 Kelch repeat-containin 97.4 0.00035 7.5E-09 73.9 8.0 97 337-443 89-224 (482)
39 PF11822 DUF3342: Domain of un 97.4 0.00031 6.6E-09 68.5 5.8 88 75-164 14-102 (317)
40 KOG4693 Uncharacterized conser 97.3 0.00059 1.3E-08 64.2 7.3 98 337-443 45-191 (392)
41 PF07646 Kelch_2: Kelch motif; 97.3 0.00034 7.4E-09 49.2 3.9 44 354-431 1-49 (49)
42 KOG1987 Speckle-type POZ prote 97.1 0.00024 5.3E-09 70.3 2.4 126 75-208 110-240 (297)
43 KOG1230 Protein containing rep 97.0 0.0019 4E-08 64.5 7.1 117 336-470 98-254 (521)
44 smart00612 Kelch Kelch domain. 96.8 0.0022 4.9E-08 44.0 4.2 31 335-365 14-47 (47)
45 KOG1230 Protein containing rep 96.7 0.0052 1.1E-07 61.4 8.0 64 336-403 154-245 (521)
46 KOG4152 Host cell transcriptio 96.7 0.0029 6.2E-08 64.6 6.4 65 335-403 56-149 (830)
47 KOG3473 RNA polymerase II tran 96.4 0.007 1.5E-07 48.0 5.4 72 76-151 28-112 (112)
48 smart00612 Kelch Kelch domain. 96.3 0.0035 7.5E-08 43.0 2.7 25 418-442 18-45 (47)
49 PF13418 Kelch_4: Galactose ox 96.1 0.0051 1.1E-07 43.1 2.7 45 354-432 1-49 (49)
50 smart00512 Skp1 Found in Skp1 96.0 0.019 4.1E-07 47.4 6.2 78 70-151 4-104 (104)
51 PF13854 Kelch_5: Kelch motif 95.4 0.017 3.8E-07 39.0 3.0 24 351-378 1-24 (42)
52 KOG1724 SCF ubiquitin ligase, 95.0 0.043 9.4E-07 48.8 5.1 98 76-177 16-140 (162)
53 KOG2714 SETA binding protein S 94.7 0.099 2.2E-06 52.8 7.4 90 70-163 13-112 (465)
54 KOG1665 AFH1-interacting prote 94.5 0.1 2.3E-06 48.1 6.4 70 88-160 33-105 (302)
55 PF13964 Kelch_6: Kelch motif 94.0 0.083 1.8E-06 37.0 3.9 29 327-355 12-50 (50)
56 PF13415 Kelch_3: Galactose ox 93.7 0.067 1.4E-06 37.4 2.8 24 418-441 22-48 (49)
57 KOG4152 Host cell transcriptio 93.4 0.13 2.8E-06 52.9 5.5 64 336-403 230-335 (830)
58 PF03931 Skp1_POZ: Skp1 family 93.1 0.46 1E-05 35.0 6.7 54 70-128 3-59 (62)
59 PF13415 Kelch_3: Galactose ox 93.1 0.2 4.4E-06 34.9 4.5 28 335-362 18-48 (49)
60 COG3055 Uncharacterized protei 91.8 0.37 7.9E-06 47.8 6.0 38 336-377 113-155 (381)
61 COG5201 SKP1 SCF ubiquitin lig 90.1 0.96 2.1E-05 38.1 6.0 82 77-164 14-120 (158)
62 PLN02772 guanylate kinase 89.5 0.46 1E-05 48.5 4.6 71 353-471 23-99 (398)
63 PF01344 Kelch_1: Kelch motif; 88.8 0.61 1.3E-05 31.8 3.5 18 335-352 27-44 (47)
64 PLN02772 guanylate kinase 88.1 0.78 1.7E-05 46.8 5.1 55 327-386 35-103 (398)
65 PF01466 Skp1: Skp1 family, di 87.5 0.7 1.5E-05 35.9 3.5 43 137-179 14-58 (78)
66 KOG0511 Ankyrin repeat protein 86.9 0.21 4.5E-06 49.6 0.3 84 68-156 150-236 (516)
67 COG3055 Uncharacterized protei 85.5 1.1 2.5E-05 44.5 4.5 80 345-467 69-155 (381)
68 KOG1778 CREB binding protein/P 83.6 0.79 1.7E-05 45.5 2.5 130 76-213 37-167 (319)
69 KOG2715 Uncharacterized conser 82.3 3.8 8.3E-05 36.3 5.9 98 64-164 17-120 (210)
70 KOG3840 Uncharaterized conserv 81.4 7.3 0.00016 37.9 7.9 84 69-153 97-186 (438)
71 KOG4350 Uncharacterized conser 79.4 3.6 7.8E-05 41.6 5.3 113 137-281 148-261 (620)
72 PF11822 DUF3342: Domain of un 76.9 1.6 3.4E-05 43.0 2.1 55 166-224 71-125 (317)
73 PF07707 BACK: BTB And C-termi 75.5 11 0.00024 30.1 6.6 83 140-225 2-102 (103)
74 PF07250 Glyoxal_oxid_N: Glyox 60.0 14 0.0003 35.4 4.5 62 338-403 48-131 (243)
75 KOG2723 Uncharacterized conser 58.6 33 0.00071 32.2 6.6 91 68-161 8-105 (221)
76 smart00875 BACK BTB And C-term 42.1 1.3E+02 0.0028 23.4 7.1 24 141-164 3-26 (101)
77 PF07250 Glyoxal_oxid_N: Glyox 41.5 27 0.00059 33.4 3.3 40 334-377 89-137 (243)
78 KOG2437 Muskelin [Signal trans 36.9 21 0.00046 37.3 1.9 47 327-377 273-333 (723)
79 KOG2075 Topoisomerase TOP1-int 31.9 1.3E+02 0.0029 31.5 6.6 45 166-218 184-228 (521)
80 KOG2437 Muskelin [Signal trans 25.3 79 0.0017 33.3 3.7 38 336-377 346-394 (723)
81 PF00651 BTB: BTB/POZ domain; 24.8 68 0.0015 25.7 2.7 32 167-202 78-110 (111)
82 PF03089 RAG2: Recombination a 23.8 2.4E+02 0.0053 27.7 6.4 37 337-377 132-173 (337)
83 PF03089 RAG2: Recombination a 23.5 1.6E+02 0.0034 28.9 5.1 74 387-468 84-174 (337)
84 KOG3713 Voltage-gated K+ chann 21.2 1.9E+02 0.004 30.5 5.5 58 104-164 80-139 (477)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=6.3e-68 Score=562.12 Aligned_cols=384 Identities=20% Similarity=0.269 Sum_probs=348.2
Q ss_pred ccCCCccccchhhhcccCCCCCCCccEEEEEe--eEEeehhhhhcCCHHHHHhhcCCCCCCCCceEEEecCCCcHHHHHH
Q 011762 44 DVGLNLKQCGEEATGNIDPAWSMDLSTVLRVK--TVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALME 121 (478)
Q Consensus 44 ~~~~~~~~~~~l~~l~~~~~~~~~~DV~l~v~--~f~aHr~vLaa~S~yF~~mf~~~~~es~~~~i~l~~~~v~~~~f~~ 121 (478)
.+.+..|...+++.|+.+|+.+.+|||++.++ +|+|||.||||+||||++||+++++|+.+++|.|. ++++.+++.
T Consensus 13 ~~~~~~h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~--~v~~~~l~~ 90 (571)
T KOG4441|consen 13 EFTDPSHSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLE--GVDPETLEL 90 (571)
T ss_pred ccccHHHHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEe--cCCHHHHHH
Confidence 45667899999999999999999999999994 69999999999999999999999999999999999 899999999
Q ss_pred HHHHHccCceecCccchHHHHHHHHhhcchhhHHHHHHHhhhcCCCCHHhHHHHHhccchhhhhhchHHHHHHHHHHHHH
Q 011762 122 LLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAA 201 (478)
Q Consensus 122 lL~fiYtg~i~i~~~~~v~~lL~aA~~l~i~~L~~~C~~~L~~~~l~~~n~l~i~~~A~~~~~~~~~~~L~~~~~~fI~~ 201 (478)
+++|+|||++.|+. +||++||.+|++||++.+.++|++||.+ +++++||+.+..+|+.+ +|.+|.+.+..||.+
T Consensus 91 ll~y~Yt~~i~i~~-~nVq~ll~aA~~lQi~~v~~~C~~fL~~-~l~~~Nclgi~~~a~~~----~~~~L~~~a~~~i~~ 164 (571)
T KOG4441|consen 91 LLDYAYTGKLEISE-DNVQELLEAASLLQIPEVVDACCEFLES-QLDPSNCLGIRRFAELH----SCTELLEVADEYILQ 164 (571)
T ss_pred HHHHhhcceEEech-HhHHHHHHHHHHhhhHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhc----CcHHHHHHHHHHHHH
Confidence 99999999999998 9999999999999999999999999999 89999999999999865 999999999999999
Q ss_pred cHHHHhccchhhhcCCHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHhcccCcCCCCCHHHHHhh
Q 011762 202 RYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRLIRFPYMTCRKLKKV 281 (478)
Q Consensus 202 nf~~v~~~s~~fl~L~~~~l~~lL~~d~L~v~sE~~vf~av~~Wl~~~~~~~~~r~~~~~~~Ll~~VRf~~ls~~~L~~~ 281 (478)
||.++.+ +++|++||.+++..+|++|+|+|.+|.+||+++++|++|| .+.|..++ +.|+++||||+|++.+|.+.
T Consensus 165 ~F~~v~~-~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d---~~~R~~~~-~~ll~~vr~~ll~~~~l~~~ 239 (571)
T KOG4441|consen 165 HFAEVSK-TEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKHD---FEEREEHL-PALLEAVRLPLLPPQFLVEI 239 (571)
T ss_pred HHHHHhc-cHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHHHHhcC---HhhHHHHH-HHHHHhcCccCCCHHHHHHH
Confidence 9999999 9999999999999999999999999999999999999999 78889998 89999999999999999999
Q ss_pred cccCCCC--chHHHHHHHHHHhhhcCcccchhhhhhhhhhcccc-ccceeEeeecc-------cceEEEecCCCCeEEE-
Q 011762 282 LTCNDFD--PELASKVVLESLFFKAETPYRQRALAAEEANSTYR-RFVERAYKYRP-------VKVVEFELPRQQCVVY- 350 (478)
Q Consensus 282 ~~~~~l~--~~~c~~~l~ea~~~~~~~~~~~~~~~~~~~~~~pr-~~~~~i~~~~~-------~~~v~~y~p~~~~W~~- 350 (478)
+...+++ ++.|+.++.+|++||..| .+++.+++++++ || ...+.|++.|+ .+.+++|||.++.|..
T Consensus 240 v~~~~~~~~~~~c~~~l~ea~~~~~~~-~~~~~~~~~~t~--~r~~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~ 316 (571)
T KOG4441|consen 240 VESEPLIKRDSACRDLLDEAKKYHLLP-QRRPVMQSPRTR--PRRSVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSL 316 (571)
T ss_pred HhhhhhhccCHHHHHHHHHHHHHhhCc-ccCccccCCCcc--cCcCCCCeEEEECCCCCCCcccceeEEecCCcCcEeec
Confidence 9998876 478999999999999984 566778899988 57 45567777554 3689999999999998
Q ss_pred --ccccccceeeeecCCeeeeccceecccc--cccccce---------e-----eccCCceeEEEEEeceec-------c
Q 011762 351 --LDLKREECAHLFPAGRIYSQAFHLGGQG--FFLSAHC---------N-----MDQQSSFHCFGLFLGMQE-------K 405 (478)
Q Consensus 351 --l~~~r~~~~~~~~~~~iY~~~~v~GG~~--~~~~~~~---------~-----m~~~R~~~~~~~l~g~l~-------~ 405 (478)
||.+|..+++++++|.|| ++||+. ....+.+ | |+++|+.+++++++|+|+ .
T Consensus 317 a~m~~~r~~~~~~~~~~~lY----v~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~ 392 (571)
T KOG4441|consen 317 APMPSPRCRVGVAVLNGKLY----VVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGE 392 (571)
T ss_pred CCCCcccccccEEEECCEEE----EEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccc
Confidence 899999999999999999 999983 3333333 4 999999999999999992 3
Q ss_pred CCcceeeeceeeeeecC---CcceeccCCCceeeeccccccccccCCCCCceeeecCCcceeccee
Q 011762 406 GSVSFAVDYEFAARIKP---TEEYVSKYKGNYTFTGGKAVGYRNLFGIPWTAFMADDSIYFINGNL 468 (478)
Q Consensus 406 ~~~~s~v~~~~~E~Ydp---~W~~v~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (478)
..+.+ | ||||| +|+.++||+.++..+|++++ +..||.+||..
T Consensus 393 ~~l~s-v-----E~YDp~~~~W~~va~m~~~r~~~gv~~~---------------~g~iYi~GG~~ 437 (571)
T KOG4441|consen 393 KSLNS-V-----ECYDPVTNKWTPVAPMLTRRSGHGVAVL---------------GGKLYIIGGGD 437 (571)
T ss_pred ccccc-E-----EEecCCCCcccccCCCCcceeeeEEEEE---------------CCEEEEEcCcC
Confidence 35556 5 99999 99999999999998888777 44577777743
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=4.4e-62 Score=519.25 Aligned_cols=366 Identities=13% Similarity=0.111 Sum_probs=311.7
Q ss_pred ccCCCccccchhhhcccCCCCCCCccEEEEEe---eEEeehhhhhcCCHHHHHhhcCCCCCCC-CceEEEecCCCcHHHH
Q 011762 44 DVGLNLKQCGEEATGNIDPAWSMDLSTVLRVK---TVHISSPILAAKSPFFYKLFSNGMRESE-QRYVTLRIHASEEAAL 119 (478)
Q Consensus 44 ~~~~~~~~~~~l~~l~~~~~~~~~~DV~l~v~---~f~aHr~vLaa~S~yF~~mf~~~~~es~-~~~i~l~~~~v~~~~f 119 (478)
|..+..|+..+++.|+++|+++.+|||+|.++ +|+|||+||||+|+||++||+++|+|+. +++|+|+ ++++++|
T Consensus 2 ~~~~~~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~--~v~~~~~ 79 (557)
T PHA02713 2 DIDDIKHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQ--MFDKDAV 79 (557)
T ss_pred CcchhhhhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEec--cCCHHHH
Confidence 34566789999999999999999999999984 5999999999999999999999999874 7899998 9999999
Q ss_pred HHHHHHHccCceecCccchHHHHHHHHhhcchhhHHHHHHHhhhcCCCCHHhHHHHHhccchhhhhhchHHHHHHHHHHH
Q 011762 120 MELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFL 199 (478)
Q Consensus 120 ~~lL~fiYtg~i~i~~~~~v~~lL~aA~~l~i~~L~~~C~~~L~~~~l~~~n~l~i~~~A~~~~~~~~~~~L~~~~~~fI 199 (478)
+.+|+|+|||+ ++. +|+++||.||++||++.|+++|++||.+ +++++||+.++.+|..+ .+..|.++|.+||
T Consensus 80 ~~ll~y~Yt~~--i~~-~nv~~ll~aA~~lqi~~l~~~C~~~l~~-~l~~~NCl~i~~~~~~~----~~~~L~~~a~~~i 151 (557)
T PHA02713 80 KNIVQYLYNRH--ISS-MNVIDVLKCADYLLIDDLVTDCESYIKD-YTNHDTCIYMYHRLYEM----SHIPIVKYIKRML 151 (557)
T ss_pred HHHHHHhcCCC--CCH-HHHHHHHHHHHHHCHHHHHHHHHHHHHh-hCCccchHHHHHHHHhc----cchHHHHHHHHHH
Confidence 99999999998 676 8999999999999999999999999999 89999999999876543 6778999999999
Q ss_pred HHcHHHHhccchhhhcCCHHHHHHhhcCCC-CCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHhcccCcCCCCCHHHH
Q 011762 200 AARYKDISKFQEEVLNLPLAGIEAVLASDD-LQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRLIRFPYMTCRKL 278 (478)
Q Consensus 200 ~~nf~~v~~~s~~fl~L~~~~l~~lL~~d~-L~v~sE~~vf~av~~Wl~~~~~~~~~r~~~~~~~Ll~~VRf~~ls~~~L 278 (478)
.+||.++.+ +++|++|+.+.|.++|++|+ |+|.+|++||+|+++|++|| .+.|+ ++ .+||++|||++|++.++
T Consensus 152 ~~~f~~v~~-~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d---~~~r~-~~-~~ll~~VR~~~l~~~~~ 225 (557)
T PHA02713 152 MSNIPTLIT-TDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEYN---YITEE-QL-LCILSCIDIQNLDKKSR 225 (557)
T ss_pred HHHHHHHhC-ChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhcC---HHHHH-HH-hhhHhhhhHhhcchhhh
Confidence 999999999 99999999999999999987 79999999999999999999 56554 45 69999999999999988
Q ss_pred HhhcccCCCC--chHHHHHHHHHHhhhcCcccchhhhhhhhhhccccccceeEeeecc-----cceEEEecCCCCeEEE-
Q 011762 279 KKVLTCNDFD--PELASKVVLESLFFKAETPYRQRALAAEEANSTYRRFVERAYKYRP-----VKVVEFELPRQQCVVY- 350 (478)
Q Consensus 279 ~~~~~~~~l~--~~~c~~~l~ea~~~~~~~~~~~~~~~~~~~~~~pr~~~~~i~~~~~-----~~~v~~y~p~~~~W~~- 350 (478)
. .+.+++++ .+.|++++.+|++++. +. ||. ..++..++ ...+++|||.+++|..
T Consensus 226 ~-~~~~~~~i~~~~~c~~~l~~a~~~~~-------------~~--~r~--~~l~~~~g~~~~~~~~v~~yd~~~~~W~~l 287 (557)
T PHA02713 226 L-LLYSNKTINMYPSCIQFLLDNKQNRN-------------II--PRQ--LCLVCHDTKYNVCNPCILVYNINTMEYSVI 287 (557)
T ss_pred h-hhcchHHHHhhHHHHHHHhhhhhhcc-------------cC--Ccc--eEEEEecCccccCCCCEEEEeCCCCeEEEC
Confidence 7 45555554 4789999999875332 11 343 23333322 2468999999999997
Q ss_pred --ccccccceeeeecCCeeeeccceecccc--cc---------ccccee-----eccCCceeEEEEEeceec--cC----
Q 011762 351 --LDLKREECAHLFPAGRIYSQAFHLGGQG--FF---------LSAHCN-----MDQQSSFHCFGLFLGMQE--KG---- 406 (478)
Q Consensus 351 --l~~~r~~~~~~~~~~~iY~~~~v~GG~~--~~---------~~~~~~-----m~~~R~~~~~~~l~g~l~--~~---- 406 (478)
||.+|.++++|+++|+|| ++||.. .. +..+.| |+.+|.++++++++|+|+ +|
T Consensus 288 ~~mp~~r~~~~~a~l~~~IY----viGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~ 363 (557)
T PHA02713 288 STIPNHIINYASAIVDNEII----IAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGT 363 (557)
T ss_pred CCCCccccceEEEEECCEEE----EEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCC
Confidence 788899999999999999 999962 11 123345 999999999999999993 11
Q ss_pred -CcceeeeceeeeeecC---CcceeccCCCceeeeccccccccccCCCCCceeeecCCcceeccee
Q 011762 407 -SVSFAVDYEFAARIKP---TEEYVSKYKGNYTFTGGKAVGYRNLFGIPWTAFMADDSIYFINGNL 468 (478)
Q Consensus 407 -~~~s~v~~~~~E~Ydp---~W~~v~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (478)
.+.+ | |+||| +|+.++|||.+++.++++++ ++.||++||..
T Consensus 364 ~~~~s-v-----e~Ydp~~~~W~~~~~mp~~r~~~~~~~~---------------~g~IYviGG~~ 408 (557)
T PHA02713 364 NVERT-I-----ECYTMGDDKWKMLPDMPIALSSYGMCVL---------------DQYIYIIGGRT 408 (557)
T ss_pred CCCce-E-----EEEECCCCeEEECCCCCcccccccEEEE---------------CCEEEEEeCCC
Confidence 2334 5 99999 99999999999998887776 56788888853
No 3
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=7.3e-58 Score=480.15 Aligned_cols=374 Identities=15% Similarity=0.166 Sum_probs=295.6
Q ss_pred cccCCCCCCCccEEEEEe-eEEeehhhhhcCCHHHHHhhcCCCCCCCCceEEEecCCCcHHHHHHHHHHHccCceecCcc
Q 011762 58 GNIDPAWSMDLSTVLRVK-TVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTP 136 (478)
Q Consensus 58 l~~~~~~~~~~DV~l~v~-~f~aHr~vLaa~S~yF~~mf~~~~~es~~~~i~l~~~~v~~~~f~~lL~fiYtg~i~i~~~ 136 (478)
+-.+|.++.||||++.++ +|+|||+|||++|||||+||+++|+|+.+ +|.+...++++++|+.+|+|+|||++.|+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~it~- 90 (480)
T PHA02790 13 ILALSMTKKFKTIIEAIGGNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVYIDS- 90 (480)
T ss_pred HHHHHhhhhhceEEEEcCcEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEEEec-
Confidence 445889999999999994 79999999999999999999999999954 566532389999999999999999999998
Q ss_pred chHHHHHHHHhhcchhhHHHHHHHhhhcCCCCHHhHHHHHhccchhhhhhchHHHHHHHHHHHHHcHHHHhccc--hhhh
Q 011762 137 TALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQ--EEVL 214 (478)
Q Consensus 137 ~~v~~lL~aA~~l~i~~L~~~C~~~L~~~~l~~~n~l~i~~~A~~~~~~~~~~~L~~~~~~fI~~nf~~v~~~s--~~fl 214 (478)
+||+++|.||++||++.++++|++||.+ +|+++||++++.+|+.| +|.+|.++|.+||.+||.++.+ + ++|+
T Consensus 91 ~nV~~ll~aA~~Lqi~~v~~~C~~fL~~-~l~~~NCl~i~~~A~~y----~~~~L~~~a~~fi~~nF~~v~~-~~~~ef~ 164 (480)
T PHA02790 91 HNVVNLLRASILTSVEFIIYTCINFILR-DFRKEYCVECYMMGIEY----GLSNLLCHTKDFIAKHFLELED-DIIDNFD 164 (480)
T ss_pred ccHHHHHHHHHHhChHHHHHHHHHHHHh-hCCcchHHHHHHHHHHh----CHHHHHHHHHHHHHHhHHHHhc-ccchhhh
Confidence 9999999999999999999999999999 99999999999999865 9999999999999999999998 7 8999
Q ss_pred cCCHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHhccc-CcCCCCCHHHHHhhcccCCCCchHHH
Q 011762 215 NLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRL-IRFPYMTCRKLKKVLTCNDFDPELAS 293 (478)
Q Consensus 215 ~L~~~~l~~lL~~d~L~v~sE~~vf~av~~Wl~~~~~~~~~r~~~~~~~Ll~~-VRf~~ls~~~L~~~~~~~~l~~~~c~ 293 (478)
.||. .+||++|+|+|.+|++||+|+++|++|+ ..|..++ .+++++ ||+++|++.++.+ +.
T Consensus 165 ~L~~---~~lLssd~L~v~~Ee~V~eav~~Wl~~~----~~~~~~l-~~~vr~~ir~~~l~~~~l~~-----------~~ 225 (480)
T PHA02790 165 YLSM---KLILESDELNVPDEDYVVDFVIKWYMKR----RNRLGNL-LLLIKNVIRSNYLSPRGINN-----------VK 225 (480)
T ss_pred hCCH---HHhcccccCCCccHHHHHHHHHHHHHhh----HHHHHHH-HHHHHhcCChhhCCHHHHHH-----------HH
Confidence 9996 6899999999999999999999999997 4456555 466666 8999999888753 23
Q ss_pred HHHHHHHhhhcCcccch----hhhh-hhhh-------hc-cccccceeEeeecc------cceEEEecCCCCeEEE---c
Q 011762 294 KVVLESLFFKAETPYRQ----RALA-AEEA-------NS-TYRRFVERAYKYRP------VKVVEFELPRQQCVVY---L 351 (478)
Q Consensus 294 ~~l~ea~~~~~~~~~~~----~~~~-~~~~-------~~-~pr~~~~~i~~~~~------~~~v~~y~p~~~~W~~---l 351 (478)
.++.++..++..+..+. +... .+.. .. ......+.+|+.|+ .+++++|||.+++|.. |
T Consensus 226 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m 305 (480)
T PHA02790 226 WILDCTKIFHCDKQPRKSYKYPFIEYPMNMDQIIDIFHMCTSTHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPM 305 (480)
T ss_pred HHHHHHHHhhccccccccccccccccCCcccceeeccCCcceEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCC
Confidence 34445554443210000 0000 0000 00 00001245666554 3689999999999998 7
Q ss_pred cccccceeeeecCCeeeeccceecccc-------ccccccee-----eccCCceeEEEEEeceec--cC---Ccceeeec
Q 011762 352 DLKREECAHLFPAGRIYSQAFHLGGQG-------FFLSAHCN-----MDQQSSFHCFGLFLGMQE--KG---SVSFAVDY 414 (478)
Q Consensus 352 ~~~r~~~~~~~~~~~iY~~~~v~GG~~-------~~~~~~~~-----m~~~R~~~~~~~l~g~l~--~~---~~~s~v~~ 414 (478)
+.+|..++++++||+|| ++||.. +.+....| |+.+|.++++++++|+|+ +| ...+ |
T Consensus 306 ~~~r~~~~~v~~~~~iY----viGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~-v-- 378 (480)
T PHA02790 306 NSPRLYASGVPANNKLY----VVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTT-T-- 378 (480)
T ss_pred CchhhcceEEEECCEEE----EECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCcc-E--
Confidence 88899999999999999 999962 12234456 999999999999999993 12 2233 5
Q ss_pred eeeeeecC---CcceeccCCCceeeecccccc-----------ccccCCCCCceeee-------------cCCcceecce
Q 011762 415 EFAARIKP---TEEYVSKYKGNYTFTGGKAVG-----------YRNLFGIPWTAFMA-------------DDSIYFINGN 467 (478)
Q Consensus 415 ~~~E~Ydp---~W~~v~~m~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~-------------~~~~~~~~~~ 467 (478)
|+||| +|+.++||+.|+..+++++++ .+++..-+|+.+.. ++.||++||-
T Consensus 379 ---e~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~ 455 (480)
T PHA02790 379 ---EYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRNAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGF 455 (480)
T ss_pred ---EEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCceEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCc
Confidence 99999 999999999999877655443 22344446776543 5899999996
Q ss_pred e
Q 011762 468 L 468 (478)
Q Consensus 468 ~ 468 (478)
.
T Consensus 456 ~ 456 (480)
T PHA02790 456 Y 456 (480)
T ss_pred C
Confidence 4
No 4
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=2.3e-54 Score=461.70 Aligned_cols=352 Identities=14% Similarity=0.164 Sum_probs=291.8
Q ss_pred CCCCccEEEEE----eeEEeehhhhhcCCHHHHHhhcCCCCCCCCceEEEecCCCcHHHHHHHHHHHccCceecCccchH
Q 011762 64 WSMDLSTVLRV----KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTAL 139 (478)
Q Consensus 64 ~~~~~DV~l~v----~~f~aHr~vLaa~S~yF~~mf~~~~~es~~~~i~l~~~~v~~~~f~~lL~fiYtg~i~i~~~~~v 139 (478)
++.+|||+|.+ +.|+|||.|||++|+||++||+++|+ +.+|+|+ + ++++|+.+|+|+|||++.++. +++
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~--~-~~~~~~~~l~y~Ytg~~~i~~-~~~ 78 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLN--I-DYDSFNEVIKYIYTGKINITS-NNV 78 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEec--C-CHHHHHHHHHHhcCCceEEcH-HHH
Confidence 78899999998 36999999999999999999999997 5789998 7 999999999999999999997 999
Q ss_pred HHHHHHHhhcchhhHHHHHHHhhhcCCCCHHhHHHHHhccchhhhhhchHHHHHHHHHHHHHcHHHHhccchhhhcCCHH
Q 011762 140 LDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLA 219 (478)
Q Consensus 140 ~~lL~aA~~l~i~~L~~~C~~~L~~~~l~~~n~l~i~~~A~~~~~~~~~~~L~~~~~~fI~~nf~~v~~~s~~fl~L~~~ 219 (478)
.+||.+|++||++.|++.|++||.+ .++.+||+.++.+|..+ ++.+|.+.|.+||.+||.++.+ +++|++|+.+
T Consensus 79 ~~ll~~A~~l~~~~l~~~C~~~l~~-~l~~~nc~~~~~~a~~~----~~~~L~~~~~~~i~~nf~~v~~-~~~f~~l~~~ 152 (534)
T PHA03098 79 KDILSIANYLIIDFLINLCINYIIK-IIDDNNCIDIYRFSFFY----GCKKLYSAAYNYIRNNIELIYN-DPDFIYLSKN 152 (534)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHH-hCCHhHHHHHHHHHHHc----CcHHHHHHHHHHHHHHHHHHhc-CchhhcCCHH
Confidence 9999999999999999999999999 89999999999999865 9999999999999999999999 9999999999
Q ss_pred HHHHhhcCCCCCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHhcccCcCCCCCHHHHHhhcc------cCCCC-chHH
Q 011762 220 GIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRLIRFPYMTCRKLKKVLT------CNDFD-PELA 292 (478)
Q Consensus 220 ~l~~lL~~d~L~v~sE~~vf~av~~Wl~~~~~~~~~r~~~~~~~Ll~~VRf~~ls~~~L~~~~~------~~~l~-~~~c 292 (478)
.+..+|++|+|+|.+|++||+++++|++++ .++|.+++ ++||++|||++|++++|.+++. .+++. ++.|
T Consensus 153 ~l~~ll~~~~L~v~~E~~v~~av~~W~~~~---~~~r~~~~-~~ll~~vR~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 228 (534)
T PHA03098 153 ELIKILSDDKLNVSSEDVVLEIIIKWLTSK---KNNKYKDI-CLILKVLRITFLSEEGIKKLKRWKLRIKKKKIVFNKRC 228 (534)
T ss_pred HHHHHhcCCCcCcCCHHHHHHHHHHHHhcC---hhhhHhHH-HHHHhhccccccCHHHHHHHHHHHhhcCCcceeccccc
Confidence 999999999999999999999999999999 78898898 8999999999999999998775 44443 4678
Q ss_pred HHHHHHHHhhhcCcccchh----hh----------------h--hhhhh---cccccc--c-----eeEeeecc------
Q 011762 293 SKVVLESLFFKAETPYRQR----AL----------------A--AEEAN---STYRRF--V-----ERAYKYRP------ 334 (478)
Q Consensus 293 ~~~l~ea~~~~~~~~~~~~----~~----------------~--~~~~~---~~pr~~--~-----~~i~~~~~------ 334 (478)
..++.++..++.....+.+ .+ . +.+-. ..|+.. . +.+|+.|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~ 308 (534)
T PHA03098 229 IKIIYSKKYNLNKILPRSSTFGSIIYIHITMSIFTYNYITNYSPLSEINTIIDIHYVYCFGSVVLNNVIYFIGGMNKNNL 308 (534)
T ss_pred hHHHHHHHhcccCCCcCccCCCcceEeecccchhhceeeecchhhhhcccccCccccccceEEEECCEEEEECCCcCCCC
Confidence 8888888766421100000 00 0 00000 011111 1 34566443
Q ss_pred -cceEEEecCCCCeEEE---ccccccceeeeecCCeeeeccceecccc----------ccccccee-----eccCCceeE
Q 011762 335 -VKVVEFELPRQQCVVY---LDLKREECAHLFPAGRIYSQAFHLGGQG----------FFLSAHCN-----MDQQSSFHC 395 (478)
Q Consensus 335 -~~~v~~y~p~~~~W~~---l~~~r~~~~~~~~~~~iY~~~~v~GG~~----------~~~~~~~~-----m~~~R~~~~ 395 (478)
.+.+.+|||.+++|.. |+.+|.+|++++++|+|| ++||.. +......| |+.+|.+++
T Consensus 309 ~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~ly----v~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~ 384 (534)
T PHA03098 309 SVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIY----VIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPC 384 (534)
T ss_pred eeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEE----EEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccce
Confidence 2478999999999988 677899999999999999 999972 12233455 899999999
Q ss_pred EEEEeceec--cC------CcceeeeceeeeeecC---CcceeccCCCceeeeccccc
Q 011762 396 FGLFLGMQE--KG------SVSFAVDYEFAARIKP---TEEYVSKYKGNYTFTGGKAV 442 (478)
Q Consensus 396 ~~~l~g~l~--~~------~~~s~v~~~~~E~Ydp---~W~~v~~m~~~~~~~~~~~~ 442 (478)
+++++|+|+ +| .+.+ | |+||| +|+.+++||.++..++++++
T Consensus 385 ~~~~~~~iYv~GG~~~~~~~~~~-v-----~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 436 (534)
T PHA03098 385 VVNVNNLIYVIGGISKNDELLKT-V-----ECFSLNTNKWSKGSPLPISHYGGCAIYH 436 (534)
T ss_pred EEEECCEEEEECCcCCCCcccce-E-----EEEeCCCCeeeecCCCCccccCceEEEE
Confidence 999999992 12 1234 5 99999 89999999999886655444
No 5
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.97 E-value=2.2e-32 Score=262.81 Aligned_cols=224 Identities=21% Similarity=0.274 Sum_probs=204.5
Q ss_pred ccchhhhcccCCCCCCCccEEEEEe--eEEeehhhhhcCCHHHHHhhcCCCCCCCCceEEEecCCCcHHHHHHHHHHHcc
Q 011762 51 QCGEEATGNIDPAWSMDLSTVLRVK--TVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYS 128 (478)
Q Consensus 51 ~~~~l~~l~~~~~~~~~~DV~l~v~--~f~aHr~vLaa~S~yF~~mf~~~~~es~~~~i~l~~~~v~~~~f~~lL~fiYt 128 (478)
++++.+.+..+.-+...+||+|+++ .|+|||+|||++|.|||||+.+||+|+.+..|.|+ +...++|+.+|+||||
T Consensus 28 ~~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq--~t~~eAF~~lLrYiYt 105 (620)
T KOG4350|consen 28 SNNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQ--ETNSEAFRALLRYIYT 105 (620)
T ss_pred ccchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccc--cccHHHHHHHHHHHhh
Confidence 3455677888888999999999994 69999999999999999999999999999999998 7789999999999999
Q ss_pred CceecCc--cchHHHHHHHHhhcchhhHHHHHHHhhhcCCCCHHhHHHHHhccchhhhhhchHHHHHHHHHHHHHcHHHH
Q 011762 129 STLSTTT--PTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDI 206 (478)
Q Consensus 129 g~i~i~~--~~~v~~lL~aA~~l~i~~L~~~C~~~L~~~~l~~~n~l~i~~~A~~~~~~~~~~~L~~~~~~fI~~nf~~v 206 (478)
|++.++. .+.+.+.|.+|++|+++.|..+..+||++ -+..+|++.++..|..| ++.+|...|..|+.+|..++
T Consensus 106 g~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~-iL~~~NvCmifdaA~ly----~l~~Lt~~C~mfmDrnA~~l 180 (620)
T KOG4350|consen 106 GKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKE-ILKNENVCMIFDAAYLY----QLTDLTDYCMMFMDRNADQL 180 (620)
T ss_pred cceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHcccceeeeeeHHHHh----cchHHHHHHHHHHhcCHHhh
Confidence 9998764 26789999999999999999999999999 79999999999999765 99999999999999999999
Q ss_pred hccchhhhcCCHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHhcccCcCCCCCHHHHHhhcccCC
Q 011762 207 SKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRLIRFPYMTCRKLKKVLTCND 286 (478)
Q Consensus 207 ~~~s~~fl~L~~~~l~~lL~~d~L~v~sE~~vf~av~~Wl~~~~~~~~~r~~~~~~~Ll~~VRf~~ls~~~L~~~~~~~~ 286 (478)
.. ++.|..|+.+.|+++|.+|..- ..|.++|.|+.+|-++| . ++.. +.+++.||+|+|+..+|.+++.+..
T Consensus 181 L~-~~sFn~LSk~sL~e~l~RDsFf-ApE~~IFlAv~~W~~~N---s---ke~~-k~~~~~VRLPLm~lteLLnvVRPsG 251 (620)
T KOG4350|consen 181 LE-DPSFNRLSKDSLKELLARDSFF-APELKIFLAVRSWHQNN---S---KEAS-KVLLELVRLPLMTLTELLNVVRPSG 251 (620)
T ss_pred hc-CcchhhhhHHHHHHHHhhhccc-chHHHHHHHHHHHHhcC---c---hhhH-HHHHHHHhhhhccHHHHHhccCccc
Confidence 99 9999999999999999999986 48999999999999998 2 3344 6899999999999999999999887
Q ss_pred CCch
Q 011762 287 FDPE 290 (478)
Q Consensus 287 l~~~ 290 (478)
+..+
T Consensus 252 llsp 255 (620)
T KOG4350|consen 252 LLSP 255 (620)
T ss_pred CcCH
Confidence 7653
No 6
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.92 E-value=1.7e-24 Score=213.70 Aligned_cols=223 Identities=23% Similarity=0.345 Sum_probs=198.3
Q ss_pred hhhcccCCCCCCCccEEEEEe-------eEEeehhhhhcCCHHHHHhhcCCCCCCCCceEEEecCCCcHHHHHHHHHHHc
Q 011762 55 EATGNIDPAWSMDLSTVLRVK-------TVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMY 127 (478)
Q Consensus 55 l~~l~~~~~~~~~~DV~l~v~-------~f~aHr~vLaa~S~yF~~mf~~~~~es~~~~i~l~~~~v~~~~f~~lL~fiY 127 (478)
....-.+.++...+|+.+.|+ .|||||.|||..|+.|.+||++++.+....+|.++ ++.+.+|..+|+|+|
T Consensus 102 ~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lp--dvepaaFl~~L~flY 179 (521)
T KOG2075|consen 102 RERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLP--DVEPAAFLAFLRFLY 179 (521)
T ss_pred HHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecC--CcChhHhHHHHHHHh
Confidence 334556778899999999994 39999999999999999999999999877889988 999999999999999
Q ss_pred cCceecCccchHHHHHHHHhhcchhhHHHHHHHhhhcCCCCHHhHHHHHhc-cchhhhhhchHHHHHHHHHHHHHcHHHH
Q 011762 128 SSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDL-PSSVLMADAVQPLTDTAKQFLAARYKDI 206 (478)
Q Consensus 128 tg~i~i~~~~~v~~lL~aA~~l~i~~L~~~C~~~L~~~~l~~~n~l~i~~~-A~~~~~~~~~~~L~~~~~~fI~~nf~~v 206 (478)
+..+.+.. +++..+|.+|++|.++.|.+.|.+||+. .+.+.|.+..+.. |..+ .-++|.+.|.+-|..+|...
T Consensus 180 sdev~~~~-dtvi~tl~~AkKY~VpaLer~CVkflr~-~l~~~naf~~L~q~A~lf----~ep~Li~~c~e~id~~~~~a 253 (521)
T KOG2075|consen 180 SDEVKLAA-DTVITTLYAAKKYLVPALERQCVKFLRK-NLMADNAFLELFQRAKLF----DEPSLISICLEVIDKSFEDA 253 (521)
T ss_pred cchhhhhH-HHHHHHHHHHHHhhhHHHHHHHHHHHHH-hcCChHHHHHHHHHHHhh----cCHHHHHHHHHHhhhHHHhh
Confidence 99999997 9999999999999999999999999999 7888887777765 6544 78999999999999999999
Q ss_pred hccchhhhcCC--HHHHHHhhcCCCCCCCCHHHHHHHHHHHHHhcCC------ChHHHHHHHHHHhcccCcCCCCCHHHH
Q 011762 207 SKFQEEVLNLP--LAGIEAVLASDDLQIASEDAVYDFALKWARTHYP------KLEERREILGSRLGRLIRFPYMTCRKL 278 (478)
Q Consensus 207 ~~~s~~fl~L~--~~~l~~lL~~d~L~v~sE~~vf~av~~Wl~~~~~------~~~~r~~~~~~~Ll~~VRf~~ls~~~L 278 (478)
.. .+.|.+.. .+.++++|+++.|.+ +|..+|+|+++|+...++ +.+++++.+ ...+..||||+|..+++
T Consensus 254 l~-~EGf~did~~~dt~~evl~r~~l~~-~e~~lfeA~lkw~~~e~~rs~~~~~~~~~~~vl-~~~l~lirfp~m~~Eef 330 (521)
T KOG2075|consen 254 LT-PEGFCDIDSTRDTYEEVLRRDTLEA-REFRLFEAALKWAEAECQRSGGPVNGQNKRKVL-GRALSLIRFPFMNIEEF 330 (521)
T ss_pred hC-ccceeehhhHHHHHHHHHhhcccch-hHHHHHHHHHhhccCcchhhcCCCCccchhhhh-hheeeeecccccchhhh
Confidence 99 99999888 999999999999998 599999999999988752 245566777 79999999999999999
Q ss_pred HhhcccCCCC
Q 011762 279 KKVLTCNDFD 288 (478)
Q Consensus 279 ~~~~~~~~l~ 288 (478)
..-+++.++.
T Consensus 331 a~~~e~sgIl 340 (521)
T KOG2075|consen 331 ARGVEQSGIL 340 (521)
T ss_pred ccCccccCCc
Confidence 8777776654
No 7
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.81 E-value=9.8e-20 Score=176.08 Aligned_cols=181 Identities=16% Similarity=0.245 Sum_probs=167.5
Q ss_pred cCCCCCCCccEEEEE--eeEEeehhhhhcCCHHHHHhhcCCCCCCCCceEEEe--cCCCcHHHHHHHHHHHccCceecCc
Q 011762 60 IDPAWSMDLSTVLRV--KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLR--IHASEEAALMELLNFMYSSTLSTTT 135 (478)
Q Consensus 60 ~~~~~~~~~DV~l~v--~~f~aHr~vLaa~S~yF~~mf~~~~~es~~~~i~l~--~~~v~~~~f~~lL~fiYtg~i~i~~ 135 (478)
.+..++.-+||++.+ .+.+.||.-|.. |+||.+||+|.|+|+....|.|. .+.|+..+|..++.-+|.++++|..
T Consensus 62 ~lf~q~enSDv~l~alg~eWrlHk~yL~Q-S~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l 140 (488)
T KOG4682|consen 62 NLFLQGENSDVILEALGFEWRLHKPYLFQ-SEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKL 140 (488)
T ss_pred HHHhcCCCcceehhhccceeeeeeeeeec-cHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccH
Confidence 455688899999998 479999999975 99999999999999999887776 5689999999999999999999997
Q ss_pred cchHHHHHHHHhhcchhhHHHHHHHhhhcCCCCHHhHHHHHhccchhhhhhchHHHHHHHHHHHHHcHHHHhccchhhhc
Q 011762 136 PTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLN 215 (478)
Q Consensus 136 ~~~v~~lL~aA~~l~i~~L~~~C~~~L~~~~l~~~n~l~i~~~A~~~~~~~~~~~L~~~~~~fI~~nf~~v~~~s~~fl~ 215 (478)
+.|..+|.+|.++++++|.+.|.+-|.+ .|+++|++.++..+..| +.+.+.+.|.+++..|+..+.. ..-+.+
T Consensus 141 -~dv~gvlAaA~~lqldgl~qrC~evMie-~lspkta~~yYea~ckY----gle~vk~kc~ewl~~nl~~i~~-~q~l~e 213 (488)
T KOG4682|consen 141 -SDVVGVLAAACLLQLDGLIQRCGEVMIE-TLSPKTACGYYEAACKY----GLESVKKKCLEWLLNNLMTIQN-VQLLKE 213 (488)
T ss_pred -HHHHHHHHHHHHHHHhhHHHHHHHHHHH-hcChhhhhHhhhhhhhh----hhHHHHHHHHHHHHHhhHhhhh-HHHHHh
Confidence 8999999999999999999999999999 89999999999999765 9999999999999999999988 778889
Q ss_pred CCHHHHHHhhcCCCCCCCC-HHHHHHHHHHHHHh
Q 011762 216 LPLAGIEAVLASDDLQIAS-EDAVYDFALKWART 248 (478)
Q Consensus 216 L~~~~l~~lL~~d~L~v~s-E~~vf~av~~Wl~~ 248 (478)
++.+.+..+|.|++|-|-+ |.++|..+..|+--
T Consensus 214 i~~~Lm~~ll~SpnLfvmq~EfdLyttlk~WmfL 247 (488)
T KOG4682|consen 214 ISINLMKQLLGSPNLFVMQVEFDLYTTLKKWMFL 247 (488)
T ss_pred cCHHHHHHHhCCCCeEEEEeeehHHHHHHHHHHh
Confidence 9999999999999998876 99999999999754
No 8
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=99.75 E-value=1.1e-18 Score=144.82 Aligned_cols=103 Identities=32% Similarity=0.612 Sum_probs=92.6
Q ss_pred HHHHHhccchhhhhhchHHHHHHHHHHHHHcHHHHhccchhhhcCCHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHhcCC
Q 011762 172 ALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYP 251 (478)
Q Consensus 172 ~l~i~~~A~~~~~~~~~~~L~~~~~~fI~~nf~~v~~~s~~fl~L~~~~l~~lL~~d~L~v~sE~~vf~av~~Wl~~~~~ 251 (478)
|++++.+|..+ ++.+|.++|.+||..||.++.. +++|.+||.+.+..+|+++++++.+|.+||+++++|++++
T Consensus 1 C~~i~~~A~~~----~~~~L~~~~~~~i~~nf~~v~~-~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~-- 73 (103)
T PF07707_consen 1 CLSIYRLAEKY----GLEELAEACLRFIAKNFNEVSK-SDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHN-- 73 (103)
T ss_dssp HHHHHHHHHHT----T-HHHHHHHHHHHHHTHHHHTT-SHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCT--
T ss_pred ChhHHHHHHHc----ChHHHHHHHHHHHHHHHHHHcc-chhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhC--
Confidence 88999999865 9999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcccCcCCCCCHHHHHhhcc
Q 011762 252 KLEERREILGSRLGRLIRFPYMTCRKLKKVLT 283 (478)
Q Consensus 252 ~~~~r~~~~~~~Ll~~VRf~~ls~~~L~~~~~ 283 (478)
.++|.+++ ..|+++|||++|++++|.+.++
T Consensus 74 -~~~r~~~~-~~Ll~~iR~~~l~~~~L~~~v~ 103 (103)
T PF07707_consen 74 -PENREEHL-KELLSCIRFPLLSPEELQNVVE 103 (103)
T ss_dssp -HHHHTTTH-HHHHCCCHHHCT-HHHHHHCCT
T ss_pred -HHHHHHHH-HHHHHhCCcccCCHHHHHHHHC
Confidence 77799888 8999999999999999988653
No 9
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.75 E-value=2.2e-18 Score=152.04 Aligned_cols=172 Identities=15% Similarity=0.232 Sum_probs=147.6
Q ss_pred CccccchhhhcccCCCCCCCccEEEEEe-----eEEeehhhhhcCCHHHHHhhcCCCCCCCCceEEEecCCCcHHHHHHH
Q 011762 48 NLKQCGEEATGNIDPAWSMDLSTVLRVK-----TVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMEL 122 (478)
Q Consensus 48 ~~~~~~~l~~l~~~~~~~~~~DV~l~v~-----~f~aHr~vLaa~S~yF~~mf~~~~~es~~~~i~l~~~~v~~~~f~~l 122 (478)
++..+.++.-..++...+.|+|++|.++ .++|||.|||++|++++ |.++-.| ...+..+. ++++++|...
T Consensus 47 dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~de-kse~~~~d--Dad~Ea~~t~ 121 (280)
T KOG4591|consen 47 DSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDE-KSEELDLD--DADFEAFHTA 121 (280)
T ss_pred hhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCc-chhhhccc--ccCHHHHHHh
Confidence 3456778888889999999999999994 49999999999999985 3443322 22344454 9999999999
Q ss_pred HHHHccCceecCc-cchHHHHHHHHhhcchhhHHHHHHHhhhcCCCCHHhHHHHHhccchhhhhhchHHHHHHHHHHHHH
Q 011762 123 LNFMYSSTLSTTT-PTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAA 201 (478)
Q Consensus 123 L~fiYtg~i~i~~-~~~v~~lL~aA~~l~i~~L~~~C~~~L~~~~l~~~n~l~i~~~A~~~~~~~~~~~L~~~~~~fI~~ 201 (478)
++||||+++++.. .+.+.++.+.|+.||++-|++.|++-+.. -++++||+.++.+|+.. +..+|...|.+.|+.
T Consensus 122 iRWIYTDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a-~l~V~NCIk~Ye~AEe~----n~~qL~n~~~eiIA~ 196 (280)
T KOG4591|consen 122 IRWIYTDEIDFKEDDEFLLELCELANRFQLELLKERCEKGLGA-LLHVDNCIKFYEFAEEL----NARQLMNVAAEIIAG 196 (280)
T ss_pred heeeeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HhhHhhHHHHHHHHHHh----hHHHHHHHHHHHHHh
Confidence 9999999999865 24578999999999999999999999999 79999999999999865 899999999999999
Q ss_pred cHHHHhccchhhhcCCHHHHHHhhcCCCCC
Q 011762 202 RYKDISKFQEEVLNLPLAGIEAVLASDDLQ 231 (478)
Q Consensus 202 nf~~v~~~s~~fl~L~~~~l~~lL~~d~L~ 231 (478)
++..+-. .+|.+++...+..++....-+
T Consensus 197 ~W~dL~~--a~FaqMs~aLLYklId~kTe~ 224 (280)
T KOG4591|consen 197 AWDDLGK--ADFAQMSAALLYKLIDGKTEN 224 (280)
T ss_pred hccccCh--HHHHhccHHHHHHHHcCCCcc
Confidence 9998865 899999999999999987543
No 10
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.74 E-value=1.6e-18 Score=145.69 Aligned_cols=104 Identities=25% Similarity=0.392 Sum_probs=90.8
Q ss_pred cccCCCCCCCccEEEEEe---eEEeehhhhhcCCHHHHHhhcCC-CCCCCCceEEEecCCCcHHHHHHHHHHHccCceec
Q 011762 58 GNIDPAWSMDLSTVLRVK---TVHISSPILAAKSPFFYKLFSNG-MRESEQRYVTLRIHASEEAALMELLNFMYSSTLST 133 (478)
Q Consensus 58 l~~~~~~~~~~DV~l~v~---~f~aHr~vLaa~S~yF~~mf~~~-~~es~~~~i~l~~~~v~~~~f~~lL~fiYtg~i~i 133 (478)
|+++++++.+||++|.++ .|+|||.||+++|+||++||.+. +.+....+|.++ ++++++|+.+++|+|+|++.+
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~l~~~Y~~~~~~ 78 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLP--DVSPEAFEAFLEYMYTGEIEI 78 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEET--TSCHHHHHHHHHHHHHSEEEE
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccc--cccccccccccccccCCcccC
Confidence 355677889999999996 59999999999999999999997 566555667777 999999999999999999999
Q ss_pred C-ccchHHHHHHHHhhcchhhHHHHHHHhhhc
Q 011762 134 T-TPTALLDVLMAADKFEVASCMRYCSRLLRN 164 (478)
Q Consensus 134 ~-~~~~v~~lL~aA~~l~i~~L~~~C~~~L~~ 164 (478)
+ . +++.+++.+|++|+++.|++.|.++|.+
T Consensus 79 ~~~-~~~~~ll~lA~~~~~~~L~~~~~~~l~~ 109 (111)
T PF00651_consen 79 NSD-ENVEELLELADKLQIPELKKACEKFLQE 109 (111)
T ss_dssp E-T-TTHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CHH-HHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 7 7 8999999999999999999999999976
No 11
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.69 E-value=4.9e-16 Score=165.83 Aligned_cols=118 Identities=20% Similarity=0.198 Sum_probs=95.2
Q ss_pred eeEeeecc-------cceEEEecCCCCeEEE---ccccccceeeeecCCeeeeccceeccc-c--c-------cccccee
Q 011762 327 ERAYKYRP-------VKVVEFELPRQQCVVY---LDLKREECAHLFPAGRIYSQAFHLGGQ-G--F-------FLSAHCN 386 (478)
Q Consensus 327 ~~i~~~~~-------~~~v~~y~p~~~~W~~---l~~~r~~~~~~~~~~~iY~~~~v~GG~-~--~-------~~~~~~~ 386 (478)
+.||+.|+ ++++++|||++++|.. |+.+|..+++++++|.|| ++||+ | . .+....|
T Consensus 333 ~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iY----avGG~dg~~~l~svE~YDp~~~~W 408 (571)
T KOG4441|consen 333 GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLY----AVGGFDGEKSLNSVECYDPVTNKW 408 (571)
T ss_pred CEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEE----EEeccccccccccEEEecCCCCcc
Confidence 34676443 3789999999999998 888999999999999999 99998 2 1 2233445
Q ss_pred -----eccCCceeEEEEEeceec--cC------CcceeeeceeeeeecC---CcceeccCCCceeeeccccccccccCCC
Q 011762 387 -----MDQQSSFHCFGLFLGMQE--KG------SVSFAVDYEFAARIKP---TEEYVSKYKGNYTFTGGKAVGYRNLFGI 450 (478)
Q Consensus 387 -----m~~~R~~~~~~~l~g~l~--~~------~~~s~v~~~~~E~Ydp---~W~~v~~m~~~~~~~~~~~~~~~~~~~~ 450 (478)
|..+|++|++++++|+|+ .| .+.+ | ||||| +|+.++||+.+|.++|+.++
T Consensus 409 ~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~s-v-----e~YDP~t~~W~~~~~M~~~R~~~g~a~~-------- 474 (571)
T KOG4441|consen 409 TPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNS-V-----ECYDPETNTWTLIAPMNTRRSGFGVAVL-------- 474 (571)
T ss_pred cccCCCCcceeeeEEEEECCEEEEEcCcCCCccccce-E-----EEEcCCCCceeecCCcccccccceEEEE--------
Confidence 899999999999999992 11 3445 5 99999 99999999999999997777
Q ss_pred CCceeeecCCcceecceee
Q 011762 451 PWTAFMADDSIYFINGNLH 469 (478)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~ 469 (478)
++.||++||.-.
T Consensus 475 -------~~~iYvvGG~~~ 486 (571)
T KOG4441|consen 475 -------NGKIYVVGGFDG 486 (571)
T ss_pred -------CCEEEEECCccC
Confidence 567777887543
No 12
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=99.66 E-value=5.4e-16 Score=127.75 Aligned_cols=99 Identities=28% Similarity=0.506 Sum_probs=89.8
Q ss_pred HHHHHhccchhhhhhchHHHHHHHHHHHHHcHHHHhccchhhhcCCHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHhcCC
Q 011762 172 ALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYP 251 (478)
Q Consensus 172 ~l~i~~~A~~~~~~~~~~~L~~~~~~fI~~nf~~v~~~s~~fl~L~~~~l~~lL~~d~L~v~sE~~vf~av~~Wl~~~~~ 251 (478)
|+.++.+|.. +++..|.+.|.+||.+||..+.+ +++|.+||.+.+..+|++|+|+|.+|.++|+++++|++++
T Consensus 1 c~~i~~~a~~----~~~~~L~~~~~~~i~~nf~~~~~-~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~-- 73 (101)
T smart00875 1 CLGIRRFAEL----YGLEELLEKALRFILKNFLEVAQ-SEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHD-- 73 (101)
T ss_pred CHhHHHHHHH----hChHHHHHHHHHHHHHHHHHHhc-CcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCC--
Confidence 6777888864 49999999999999999999999 9999999999999999999999989999999999999998
Q ss_pred ChHHHHHHHHHHhcccCcCCCCCHHHHHh
Q 011762 252 KLEERREILGSRLGRLIRFPYMTCRKLKK 280 (478)
Q Consensus 252 ~~~~r~~~~~~~Ll~~VRf~~ls~~~L~~ 280 (478)
...|. ++ ..++++|||++|++++|.+
T Consensus 74 -~~~~~-~~-~~ll~~ir~~~~~~~~l~~ 99 (101)
T smart00875 74 -PERRR-HL-PELLSHVRFPLLSPEYLLE 99 (101)
T ss_pred -HHHHH-HH-HHHHHhCCCCCCCHHHHHh
Confidence 55444 66 7999999999999998865
No 13
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.61 E-value=2.2e-15 Score=120.51 Aligned_cols=88 Identities=26% Similarity=0.458 Sum_probs=81.5
Q ss_pred cEEEEEe--eEEeehhhhhcCCHHHHHhhcCCCCCCCCceEEEecCCCcHHHHHHHHHHHccCceecCccchHHHHHHHH
Q 011762 69 STVLRVK--TVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAA 146 (478)
Q Consensus 69 DV~l~v~--~f~aHr~vLaa~S~yF~~mf~~~~~es~~~~i~l~~~~v~~~~f~~lL~fiYtg~i~i~~~~~v~~lL~aA 146 (478)
||++.++ .|++||.+|+++|+||++||.+++.++....+.++ ++++.+|+.+++|+|++++.++. .++.+++.+|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~--~~~~~~f~~~l~~ly~~~~~~~~-~~~~~l~~~a 77 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLD--DVSPEDFRALLEFLYTGKLDLPE-ENVEELLELA 77 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEec--CCCHHHHHHHHHeecCceeecCH-HHHHHHHHHH
Confidence 6788883 69999999999999999999998887777888888 89999999999999999999997 7999999999
Q ss_pred hhcchhhHHHHHH
Q 011762 147 DKFEVASCMRYCS 159 (478)
Q Consensus 147 ~~l~i~~L~~~C~ 159 (478)
++|+++.|++.|+
T Consensus 78 ~~~~~~~l~~~c~ 90 (90)
T smart00225 78 DYLQIPGLVELCE 90 (90)
T ss_pred HHHCcHHHHhhhC
Confidence 9999999999984
No 14
>PHA02713 hypothetical protein; Provisional
Probab=99.50 E-value=4e-14 Score=151.52 Aligned_cols=116 Identities=16% Similarity=0.067 Sum_probs=92.8
Q ss_pred eeEeeecc-------cceEEEecCCCCeEEE---ccccccceeeeecCCeeeeccceeccc-c---------ccccccee
Q 011762 327 ERAYKYRP-------VKVVEFELPRQQCVVY---LDLKREECAHLFPAGRIYSQAFHLGGQ-G---------FFLSAHCN 386 (478)
Q Consensus 327 ~~i~~~~~-------~~~v~~y~p~~~~W~~---l~~~r~~~~~~~~~~~iY~~~~v~GG~-~---------~~~~~~~~ 386 (478)
+.||+.|+ .+.+++|||.+++|.. |+.+|.++++++++|+|| ++||. + +.+....|
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IY----viGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIY----AIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEE----EECCcCCCCCCceEEEEECCCCeE
Confidence 45677544 3579999999999988 778999999999999999 99997 2 12233455
Q ss_pred -----eccCCceeEEEEEeceec--cCC-----------------------cceeeeceeeeeecC---CcceeccCCCc
Q 011762 387 -----MDQQSSFHCFGLFLGMQE--KGS-----------------------VSFAVDYEFAARIKP---TEEYVSKYKGN 433 (478)
Q Consensus 387 -----m~~~R~~~~~~~l~g~l~--~~~-----------------------~~s~v~~~~~E~Ydp---~W~~v~~m~~~ 433 (478)
|+.+|.++++++++|+|+ +|. +.+ | |+||| +|+.++||+.+
T Consensus 380 ~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~-v-----e~YDP~td~W~~v~~m~~~ 453 (557)
T PHA02713 380 KMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNK-V-----IRYDTVNNIWETLPNFWTG 453 (557)
T ss_pred EECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccce-E-----EEECCCCCeEeecCCCCcc
Confidence 999999999999999993 111 223 5 99999 99999999999
Q ss_pred eeeeccccccccccCCCCCceeeecCCcceecce
Q 011762 434 YTFTGGKAVGYRNLFGIPWTAFMADDSIYFINGN 467 (478)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (478)
+..+|++++ ++.||++||.
T Consensus 454 r~~~~~~~~---------------~~~IYv~GG~ 472 (557)
T PHA02713 454 TIRPGVVSH---------------KDDIYVVCDI 472 (557)
T ss_pred cccCcEEEE---------------CCEEEEEeCC
Confidence 998887776 5678888874
No 15
>PHA02790 Kelch-like protein; Provisional
Probab=99.48 E-value=8.6e-14 Score=146.68 Aligned_cols=106 Identities=15% Similarity=-0.052 Sum_probs=86.8
Q ss_pred eeEeeeccc---ceEEEecCCCCeEEE---ccccccceeeeecCCeeeeccceeccc-c-------ccccccee-----e
Q 011762 327 ERAYKYRPV---KVVEFELPRQQCVVY---LDLKREECAHLFPAGRIYSQAFHLGGQ-G-------FFLSAHCN-----M 387 (478)
Q Consensus 327 ~~i~~~~~~---~~v~~y~p~~~~W~~---l~~~r~~~~~~~~~~~iY~~~~v~GG~-~-------~~~~~~~~-----m 387 (478)
+.||+.|+. +++++|||.+++|.. ||.+|.++++++++|+|| ++||. + +.+..+.| |
T Consensus 319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IY----viGG~~~~~~~ve~ydp~~~~W~~~~~m 394 (480)
T PHA02790 319 NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIY----VIGGHSETDTTTEYLLPNHDQWQFGPST 394 (480)
T ss_pred CEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEE----EecCcCCCCccEEEEeCCCCEEEeCCCC
Confidence 467776553 679999999999988 788899999999999999 99996 2 22334556 9
Q ss_pred ccCCceeEEEEEeceec-cCCcceeeeceeeeeecC---CcceeccCCCceeeeccccccc
Q 011762 388 DQQSSFHCFGLFLGMQE-KGSVSFAVDYEFAARIKP---TEEYVSKYKGNYTFTGGKAVGY 444 (478)
Q Consensus 388 ~~~R~~~~~~~l~g~l~-~~~~~s~v~~~~~E~Ydp---~W~~v~~m~~~~~~~~~~~~~~ 444 (478)
+.+|..+++++++|+|+ -|. . + |+||| +|+.++||+.++..+|++++++
T Consensus 395 ~~~r~~~~~~~~~~~IYv~GG--~-~-----e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~ 447 (480)
T PHA02790 395 YYPHYKSCALVFGRRLFLVGR--N-A-----EFYCESSNTWTLIDDPIYPRDNPELIIVDN 447 (480)
T ss_pred CCccccceEEEECCEEEEECC--c-e-----EEecCCCCcEeEcCCCCCCccccEEEEECC
Confidence 99999999999999995 222 3 4 99999 9999999999998887766643
No 16
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.46 E-value=6.8e-14 Score=145.89 Aligned_cols=144 Identities=13% Similarity=0.224 Sum_probs=117.1
Q ss_pred CccEEEEEe-eEEeehhhhhcCCHHHHHhhcCCCCCCCCceEEEecCCCcHHHHHHHHHHHc-cCceecCc----cchHH
Q 011762 67 DLSTVLRVK-TVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMY-SSTLSTTT----PTALL 140 (478)
Q Consensus 67 ~~DV~l~v~-~f~aHr~vLaa~S~yF~~mf~~~~~es~~~~i~l~~~~v~~~~f~~lL~fiY-tg~i~i~~----~~~v~ 140 (478)
+|||+++-| .++|||++|+++++||..||..-|.|+.. |...+..++.+.|+.+|+|+| +.+..+-. .+.+.
T Consensus 712 d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS--~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~~ 789 (1267)
T KOG0783|consen 712 DTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSS--ITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFMF 789 (1267)
T ss_pred eEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhcc--ceeecCcchHHHHHHHHHHHHccchHHHHhccchhhhhH
Confidence 344444444 49999999999999999999998888766 444433677999999999999 55554321 25688
Q ss_pred HHHHHHhhcchhhHHHHHHHhhhcCCCCHHhHHHHHhccchhhhhhchHHHHHHHHHHHHHcHHHHhccchhhhcCCH
Q 011762 141 DVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPL 218 (478)
Q Consensus 141 ~lL~aA~~l~i~~L~~~C~~~L~~~~l~~~n~l~i~~~A~~~~~~~~~~~L~~~~~~fI~~nf~~v~~~s~~fl~L~~ 218 (478)
++|..||.|-+.+|+..|+.-|.+ .++..||-.++.+|..| ++.+|...|.+||+.|...+.. -....+++-
T Consensus 790 ~il~iaDqlli~~Lk~Ice~~ll~-kl~lk~~~~llefaamY----~ak~L~~~C~dfic~N~~~~Le-arsi~~~dg 861 (1267)
T KOG0783|consen 790 EILSIADQLLILELKSICEQSLLR-KLNLKTLPTLLEFAAMY----HAKELYSRCIDFICHNIEFFLE-ARSISEWDG 861 (1267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-HhcccchHHHHHHHHHh----hHHHHHHHHHHHHHHhHHHHHH-hccHhhhcc
Confidence 999999999999999999999999 89999999999999765 9999999999999999988876 433333443
No 17
>PHA03098 kelch-like protein; Provisional
Probab=99.34 E-value=2.2e-11 Score=130.57 Aligned_cols=247 Identities=13% Similarity=0.093 Sum_probs=148.3
Q ss_pred CCCHHhHHHHHhccchhhhhhchHHHHHHHHHHHHHcHHHHhccchhhhcCCHHHHHHhhcCCCCCCCCHHHHHHHHHHH
Q 011762 166 PMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKW 245 (478)
Q Consensus 166 ~l~~~n~l~i~~~A~~~~~~~~~~~L~~~~~~fI~~nf~~v~~~s~~fl~L~~~~l~~lL~~d~L~v~sE~~vf~av~~W 245 (478)
.++.+|+..++..|..+ ..+.|.+.|.+|+.+++.. .. .-+++.+. .. .+-.++.+++..+
T Consensus 72 ~i~~~~~~~ll~~A~~l----~~~~l~~~C~~~l~~~l~~-~n-c~~~~~~a-----~~--------~~~~~L~~~~~~~ 132 (534)
T PHA03098 72 NITSNNVKDILSIANYL----IIDFLINLCINYIIKIIDD-NN-CIDIYRFS-----FF--------YGCKKLYSAAYNY 132 (534)
T ss_pred EEcHHHHHHHHHHHHHh----CcHHHHHHHHHHHHHhCCH-hH-HHHHHHHH-----HH--------cCcHHHHHHHHHH
Confidence 57899999999999865 8999999999999876431 11 11111111 11 1224566667777
Q ss_pred HHhcCCChHHHHHHHHHHhcccCcCCCCCHHHHHhhcccCCCCc--h-HHHHH------------------HHHHHhhhc
Q 011762 246 ARTHYPKLEERREILGSRLGRLIRFPYMTCRKLKKVLTCNDFDP--E-LASKV------------------VLESLFFKA 304 (478)
Q Consensus 246 l~~~~~~~~~r~~~~~~~Ll~~VRf~~ls~~~L~~~~~~~~l~~--~-~c~~~------------------l~ea~~~~~ 304 (478)
+..+ + ..+.+.=.|..|+.+.|..+++++.+.. + ...+. +.+..++..
T Consensus 133 i~~n----------f-~~v~~~~~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~vR~~~ 201 (534)
T PHA03098 133 IRNN----------I-ELIYNDPDFIYLSKNELIKILSDDKLNVSSEDVVLEIIIKWLTSKKNNKYKDICLILKVLRITF 201 (534)
T ss_pred HHHH----------H-HHHhcCchhhcCCHHHHHHHhcCCCcCcCCHHHHHHHHHHHHhcChhhhHhHHHHHHhhccccc
Confidence 6654 2 3555666777788888888777766531 1 11111 111122211
Q ss_pred Cccc-------------chhhhhhhhhh------------ccccc--cceeEeeecc----cceEEEecCCCCeEEEccc
Q 011762 305 ETPY-------------RQRALAAEEAN------------STYRR--FVERAYKYRP----VKVVEFELPRQQCVVYLDL 353 (478)
Q Consensus 305 ~~~~-------------~~~~~~~~~~~------------~~pr~--~~~~i~~~~~----~~~v~~y~p~~~~W~~l~~ 353 (478)
.++. ..+...+++.. ..||. ....+++.++ ...+.+|++.+++|..++.
T Consensus 202 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 281 (534)
T PHA03098 202 LSEEGIKKLKRWKLRIKKKKIVFNKRCIKIIYSKKYNLNKILPRSSTFGSIIYIHITMSIFTYNYITNYSPLSEINTIID 281 (534)
T ss_pred cCHHHHHHHHHHHhhcCCcceeccccchHHHHHHHhcccCCCcCccCCCcceEeecccchhhceeeecchhhhhcccccC
Confidence 1100 00000000000 01121 1123333222 2356678999999998542
Q ss_pred -c-ccceeeeecCCeeeeccceeccccc-----------cccccee-----eccCCceeEEEEEeceec--cC-----Cc
Q 011762 354 -K-REECAHLFPAGRIYSQAFHLGGQGF-----------FLSAHCN-----MDQQSSFHCFGLFLGMQE--KG-----SV 408 (478)
Q Consensus 354 -~-r~~~~~~~~~~~iY~~~~v~GG~~~-----------~~~~~~~-----m~~~R~~~~~~~l~g~l~--~~-----~~ 408 (478)
+ +..++++++++.|| ++||... ......| |..+|.++++++++|+|+ +| .+
T Consensus 282 ~~~~~~~~~~~~~~~ly----v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~ 357 (534)
T PHA03098 282 IHYVYCFGSVVLNNVIY----FIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISL 357 (534)
T ss_pred ccccccceEEEECCEEE----EECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEec
Confidence 2 34569999999999 9999711 1223445 899999999999999992 11 23
Q ss_pred ceeeeceeeeeecC---CcceeccCCCceeeeccccccccccCCCCCceeeecCCcceecce
Q 011762 409 SFAVDYEFAARIKP---TEEYVSKYKGNYTFTGGKAVGYRNLFGIPWTAFMADDSIYFINGN 467 (478)
Q Consensus 409 ~s~v~~~~~E~Ydp---~W~~v~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (478)
++ | |+||| +|+.+++||.|+..++++++ ++.||++||.
T Consensus 358 ~~-v-----~~yd~~~~~W~~~~~lp~~r~~~~~~~~---------------~~~iYv~GG~ 398 (534)
T PHA03098 358 NT-V-----ESWKPGESKWREEPPLIFPRYNPCVVNV---------------NNLIYVIGGI 398 (534)
T ss_pred ce-E-----EEEcCCCCceeeCCCcCcCCccceEEEE---------------CCEEEEECCc
Confidence 33 5 99999 99999999999987766555 4567777773
No 18
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.22 E-value=3.6e-11 Score=121.70 Aligned_cols=108 Identities=13% Similarity=0.038 Sum_probs=81.9
Q ss_pred ceEEEecCCCCeEEE---ccc-cccceeeeecCCeeeeccceeccc---ccc----------ccccee-----eccCCc-
Q 011762 336 KVVEFELPRQQCVVY---LDL-KREECAHLFPAGRIYSQAFHLGGQ---GFF----------LSAHCN-----MDQQSS- 392 (478)
Q Consensus 336 ~~v~~y~p~~~~W~~---l~~-~r~~~~~~~~~~~iY~~~~v~GG~---~~~----------~~~~~~-----m~~~R~- 392 (478)
+.+++|||.+++|.. ||. +|..+++++++|+|| ++||. +.. .....| |+.+|.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iy----v~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~ 243 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLL----LINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSS 243 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEE----EEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCC
Confidence 579999999999998 665 578899999999999 99996 110 122356 877652
Q ss_pred ------eeEEEEEeceec--cCC----------------------cceeeeceeeeeecC---CcceeccCCCceeeecc
Q 011762 393 ------FHCFGLFLGMQE--KGS----------------------VSFAVDYEFAARIKP---TEEYVSKYKGNYTFTGG 439 (478)
Q Consensus 393 ------~~~~~~l~g~l~--~~~----------------------~~s~v~~~~~E~Ydp---~W~~v~~m~~~~~~~~~ 439 (478)
.+++++++|+|+ .|. +.+ | |+||| +|+.+++||.++..+++
T Consensus 244 ~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----e~yd~~~~~W~~~~~lp~~~~~~~~ 317 (346)
T TIGR03547 244 SQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWS-S-----EVYALDNGKWSKVGKLPQGLAYGVS 317 (346)
T ss_pred ccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeE-e-----eEEEecCCcccccCCCCCCceeeEE
Confidence 455788999992 111 113 4 99999 99999999999987665
Q ss_pred ccccccccCCCCCceeeecCCcceeccee
Q 011762 440 KAVGYRNLFGIPWTAFMADDSIYFINGNL 468 (478)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (478)
+++ ++.||++||-.
T Consensus 318 ~~~---------------~~~iyv~GG~~ 331 (346)
T TIGR03547 318 VSW---------------NNGVLLIGGEN 331 (346)
T ss_pred EEc---------------CCEEEEEeccC
Confidence 555 67899999964
No 19
>PLN02153 epithiospecifier protein
Probab=99.06 E-value=6.6e-10 Score=112.32 Aligned_cols=118 Identities=14% Similarity=0.054 Sum_probs=87.0
Q ss_pred eeEeeecc------cceEEEecCCCCeEEE---c-----cccccceeeeecCCeeeeccceecccc---c----------
Q 011762 327 ERAYKYRP------VKVVEFELPRQQCVVY---L-----DLKREECAHLFPAGRIYSQAFHLGGQG---F---------- 379 (478)
Q Consensus 327 ~~i~~~~~------~~~v~~y~p~~~~W~~---l-----~~~r~~~~~~~~~~~iY~~~~v~GG~~---~---------- 379 (478)
+.||+.|+ .+.+++|||.+++|.. | |.+|..|++++.+++|| |+||.. .
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iy----v~GG~~~~~~~~~~~~~~~v 161 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVY----VFGGVSKGGLMKTPERFRTI 161 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEE----EECCccCCCccCCCcccceE
Confidence 45677554 3689999999999997 4 56789999999999999 999971 1
Q ss_pred ---cccccee-----ec---cCCceeEEEEEeceec---cC-------C----cceeeeceeeeeecC---Ccceecc--
Q 011762 380 ---FLSAHCN-----MD---QQSSFHCFGLFLGMQE---KG-------S----VSFAVDYEFAARIKP---TEEYVSK-- 429 (478)
Q Consensus 380 ---~~~~~~~-----m~---~~R~~~~~~~l~g~l~---~~-------~----~~s~v~~~~~E~Ydp---~W~~v~~-- 429 (478)
......| |. .+|..+++++++|+|+ .. . ....| ++||| +|+.+++
T Consensus 162 ~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v-----~~yd~~~~~W~~~~~~g 236 (341)
T PLN02153 162 EAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAV-----QFFDPASGKWTEVETTG 236 (341)
T ss_pred EEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCce-----EEEEcCCCcEEeccccC
Confidence 1112345 33 7899999999999982 11 0 11225 99999 9999985
Q ss_pred -CCCceeeeccccccccccCCCCCceeeecCCcceeccee
Q 011762 430 -YKGNYTFTGGKAVGYRNLFGIPWTAFMADDSIYFINGNL 468 (478)
Q Consensus 430 -m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (478)
+|.++..++++++ ++.||++||..
T Consensus 237 ~~P~~r~~~~~~~~---------------~~~iyv~GG~~ 261 (341)
T PLN02153 237 AKPSARSVFAHAVV---------------GKYIIIFGGEV 261 (341)
T ss_pred CCCCCcceeeeEEE---------------CCEEEEECccc
Confidence 6778887777666 45688888853
No 20
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.05 E-value=4.6e-10 Score=114.95 Aligned_cols=109 Identities=11% Similarity=0.086 Sum_probs=80.7
Q ss_pred ceEEEecCCCCeEEE---ccc-cccceeeeecCCeeeeccceeccc---cc----------cccccee-----eccCCc-
Q 011762 336 KVVEFELPRQQCVVY---LDL-KREECAHLFPAGRIYSQAFHLGGQ---GF----------FLSAHCN-----MDQQSS- 392 (478)
Q Consensus 336 ~~v~~y~p~~~~W~~---l~~-~r~~~~~~~~~~~iY~~~~v~GG~---~~----------~~~~~~~-----m~~~R~- 392 (478)
+.+++|||.+++|.. +|. +|..+++++++++|| ++||. +. ......| |+.+|.
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iY----v~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~ 264 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLW----LINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGG 264 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEE----EEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcC
Confidence 579999999999998 665 677889999999999 99995 11 1123456 777763
Q ss_pred -------eeEEEEEeceec--cCC-------------------cc--eeeeceeeeeecC---CcceeccCCCceeeecc
Q 011762 393 -------FHCFGLFLGMQE--KGS-------------------VS--FAVDYEFAARIKP---TEEYVSKYKGNYTFTGG 439 (478)
Q Consensus 393 -------~~~~~~l~g~l~--~~~-------------------~~--s~v~~~~~E~Ydp---~W~~v~~m~~~~~~~~~ 439 (478)
.+.+++++|+|+ .|. +. ..| |+||| +|+.+++||.++..+++
T Consensus 265 ~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~-----e~yd~~~~~W~~~~~lp~~r~~~~a 339 (376)
T PRK14131 265 SSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSD-----EIYALVNGKWQKVGELPQGLAYGVS 339 (376)
T ss_pred CcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeeh-----heEEecCCcccccCcCCCCccceEE
Confidence 233677899992 111 11 124 99999 99999999999987766
Q ss_pred ccccccccCCCCCceeeecCCcceeccee
Q 011762 440 KAVGYRNLFGIPWTAFMADDSIYFINGNL 468 (478)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (478)
+++ ++.||++||..
T Consensus 340 v~~---------------~~~iyv~GG~~ 353 (376)
T PRK14131 340 VSW---------------NNGVLLIGGET 353 (376)
T ss_pred EEe---------------CCEEEEEcCCC
Confidence 555 67899999953
No 21
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.00 E-value=1.3e-09 Score=110.39 Aligned_cols=116 Identities=13% Similarity=-0.033 Sum_probs=79.5
Q ss_pred eeEeeeccc--ceEEEecC--CCCeEEE---cc-ccccceeeeecCCeeeeccceeccccc----------------ccc
Q 011762 327 ERAYKYRPV--KVVEFELP--RQQCVVY---LD-LKREECAHLFPAGRIYSQAFHLGGQGF----------------FLS 382 (478)
Q Consensus 327 ~~i~~~~~~--~~v~~y~p--~~~~W~~---l~-~~r~~~~~~~~~~~iY~~~~v~GG~~~----------------~~~ 382 (478)
+.||+.++. +.+.+||+ .+++|.. || .+|..+++++++++|| |+||... .+.
T Consensus 18 ~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iY----v~GG~~~~~~~~~~~~~~~v~~Yd~~ 93 (346)
T TIGR03547 18 DKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLY----VFGGIGKANSEGSPQVFDDVYRYDPK 93 (346)
T ss_pred CEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEE----EEeCCCCCCCCCcceecccEEEEECC
Confidence 457775543 67888885 6789998 66 4788999999999999 9999721 112
Q ss_pred ccee----e--ccCCceeEEE-EEeceec--cCC---------------------------------------cceeeec
Q 011762 383 AHCN----M--DQQSSFHCFG-LFLGMQE--KGS---------------------------------------VSFAVDY 414 (478)
Q Consensus 383 ~~~~----m--~~~R~~~~~~-~l~g~l~--~~~---------------------------------------~~s~v~~ 414 (478)
...| + ..+|..++++ +++|+|+ .|. +++ |
T Consensus 94 ~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v-- 170 (346)
T TIGR03547 94 KNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKN-V-- 170 (346)
T ss_pred CCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccce-E--
Confidence 2344 2 3344445555 6899992 111 123 5
Q ss_pred eeeeeecC---CcceeccCCC-ceeeeccccccccccCCCCCceeeecCCcceecce
Q 011762 415 EFAARIKP---TEEYVSKYKG-NYTFTGGKAVGYRNLFGIPWTAFMADDSIYFINGN 467 (478)
Q Consensus 415 ~~~E~Ydp---~W~~v~~m~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (478)
|+||| +|+.+++||. +++.++++++ ++.||++||.
T Consensus 171 ---~~YDp~t~~W~~~~~~p~~~r~~~~~~~~---------------~~~iyv~GG~ 209 (346)
T TIGR03547 171 ---LSYDPSTNQWRNLGENPFLGTAGSAIVHK---------------GNKLLLINGE 209 (346)
T ss_pred ---EEEECCCCceeECccCCCCcCCCceEEEE---------------CCEEEEEeee
Confidence 99999 9999999996 5666665555 4567777774
No 22
>PLN02193 nitrile-specifier protein
Probab=98.97 E-value=2.2e-09 Score=113.11 Aligned_cols=117 Identities=13% Similarity=0.067 Sum_probs=88.3
Q ss_pred eeEeeecc------cceEEEecCCCCeEEE---c---cccccceeeeecCCeeeeccceecccc----------cccccc
Q 011762 327 ERAYKYRP------VKVVEFELPRQQCVVY---L---DLKREECAHLFPAGRIYSQAFHLGGQG----------FFLSAH 384 (478)
Q Consensus 327 ~~i~~~~~------~~~v~~y~p~~~~W~~---l---~~~r~~~~~~~~~~~iY~~~~v~GG~~----------~~~~~~ 384 (478)
+.||+.++ .+.+++|||.+++|.. + |.+|..|++++.+++|| ++||.. +.....
T Consensus 229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iY----v~GG~~~~~~~~~~~~yd~~t~ 304 (470)
T PLN02193 229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVY----VFGGVSATARLKTLDSYNIVDK 304 (470)
T ss_pred CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEE----EECCCCCCCCcceEEEEECCCC
Confidence 45777554 3689999999999997 4 67799999999999999 999971 112334
Q ss_pred ee--------eccCCceeEEEEEeceec-----cC-CcceeeeceeeeeecC---CcceeccC---CCceeeeccccccc
Q 011762 385 CN--------MDQQSSFHCFGLFLGMQE-----KG-SVSFAVDYEFAARIKP---TEEYVSKY---KGNYTFTGGKAVGY 444 (478)
Q Consensus 385 ~~--------m~~~R~~~~~~~l~g~l~-----~~-~~~s~v~~~~~E~Ydp---~W~~v~~m---~~~~~~~~~~~~~~ 444 (478)
.| |..+|..+++++++|+|+ .+ .+.. | ++||| +|+.++++ |.++..++++++
T Consensus 305 ~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~d-v-----~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~-- 376 (470)
T PLN02193 305 KWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDD-V-----HYYDPVQDKWTQVETFGVRPSERSVFASAAV-- 376 (470)
T ss_pred EEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCc-e-----EEEECCCCEEEEeccCCCCCCCcceeEEEEE--
Confidence 56 567899999999999992 12 2334 5 99999 89999876 778877776666
Q ss_pred cccCCCCCceeeecCCcceeccee
Q 011762 445 RNLFGIPWTAFMADDSIYFINGNL 468 (478)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~ 468 (478)
++.||++||-.
T Consensus 377 -------------~~~iyv~GG~~ 387 (470)
T PLN02193 377 -------------GKHIVIFGGEI 387 (470)
T ss_pred -------------CCEEEEECCcc
Confidence 45677777753
No 23
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.94 E-value=3.2e-09 Score=106.52 Aligned_cols=118 Identities=11% Similarity=-0.042 Sum_probs=81.7
Q ss_pred eeEeeecc------cceEEEecCCCCeEEE---ccc-cccceeeeecCCeeeeccceecccc---------ccccccee-
Q 011762 327 ERAYKYRP------VKVVEFELPRQQCVVY---LDL-KREECAHLFPAGRIYSQAFHLGGQG---------FFLSAHCN- 386 (478)
Q Consensus 327 ~~i~~~~~------~~~v~~y~p~~~~W~~---l~~-~r~~~~~~~~~~~iY~~~~v~GG~~---------~~~~~~~~- 386 (478)
+.||+.++ .+.+++|||.+++|.. ||. +|..+++++++++|| |+||.. +......|
T Consensus 124 ~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iY----v~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 124 GTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELY----VFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEE----EEcCCCCccccceEEEecCCCeeE
Confidence 45777544 3689999999999998 553 688888889999999 999961 12233456
Q ss_pred ----ec---cCCc---eeEEEEEeceec--cCC------------------------------------cceeeeceeee
Q 011762 387 ----MD---QQSS---FHCFGLFLGMQE--KGS------------------------------------VSFAVDYEFAA 418 (478)
Q Consensus 387 ----m~---~~R~---~~~~~~l~g~l~--~~~------------------------------------~~s~v~~~~~E 418 (478)
|. .+|. ..++++.+|+|+ .|. ..+.| |
T Consensus 200 ~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----~ 274 (323)
T TIGR03548 200 KVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKI-----L 274 (323)
T ss_pred ECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceE-----E
Confidence 42 3433 333445578882 111 01225 9
Q ss_pred eecC---CcceeccCC-CceeeeccccccccccCCCCCceeeecCCcceeccee
Q 011762 419 RIKP---TEEYVSKYK-GNYTFTGGKAVGYRNLFGIPWTAFMADDSIYFINGNL 468 (478)
Q Consensus 419 ~Ydp---~W~~v~~m~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (478)
+||| +|+.+++|| .++..++.+++ ++.||++||-.
T Consensus 275 ~yd~~~~~W~~~~~~p~~~r~~~~~~~~---------------~~~iyv~GG~~ 313 (323)
T TIGR03548 275 IYNVRTGKWKSIGNSPFFARCGAALLLT---------------GNNIFSINGEL 313 (323)
T ss_pred EEECCCCeeeEcccccccccCchheEEE---------------CCEEEEEeccc
Confidence 9999 999999998 46776666566 67899999964
No 24
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.93 E-value=3.6e-09 Score=106.13 Aligned_cols=121 Identities=13% Similarity=0.078 Sum_probs=84.0
Q ss_pred eeEeeecc------cceEEEecCCCCeE----EE---ccccccceeeeecCCeeeeccceeccc-c---------ccccc
Q 011762 327 ERAYKYRP------VKVVEFELPRQQCV----VY---LDLKREECAHLFPAGRIYSQAFHLGGQ-G---------FFLSA 383 (478)
Q Consensus 327 ~~i~~~~~------~~~v~~y~p~~~~W----~~---l~~~r~~~~~~~~~~~iY~~~~v~GG~-~---------~~~~~ 383 (478)
+.||+.++ .+.+++||+.+++| .. ||.+|..+++++++++|| ++||. . +.+..
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iY----v~GG~~~~~~~~~v~~yd~~~ 148 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLY----VGGGNRNGKPSNKSYLFNLET 148 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEE----EEeCcCCCccCceEEEEcCCC
Confidence 35666544 36899999999988 44 788899999999999999 99996 1 12233
Q ss_pred cee-----ec-cCCceeEEEEEeceec--cC---CcceeeeceeeeeecC---CcceeccCC---Cceeeeccccccccc
Q 011762 384 HCN-----MD-QQSSFHCFGLFLGMQE--KG---SVSFAVDYEFAARIKP---TEEYVSKYK---GNYTFTGGKAVGYRN 446 (478)
Q Consensus 384 ~~~-----m~-~~R~~~~~~~l~g~l~--~~---~~~s~v~~~~~E~Ydp---~W~~v~~m~---~~~~~~~~~~~~~~~ 446 (478)
..| |. .+|..+++++++|+|+ .| .....+ ++||| +|+.+++|+ .|+...+..++.
T Consensus 149 ~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~-----~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~--- 220 (323)
T TIGR03548 149 QEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDG-----YKYSPKKNQWQKVADPTTDSEPISLLGAASIK--- 220 (323)
T ss_pred CCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccce-----EEEecCCCeeEECCCCCCCCCceeccceeEEE---
Confidence 455 65 5899999999999993 12 111124 99999 999999984 344433322221
Q ss_pred cCCCCCceeeecCCcceeccee
Q 011762 447 LFGIPWTAFMADDSIYFINGNL 468 (478)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~ 468 (478)
..++.||++||..
T Consensus 221 ---------~~~~~iyv~GG~~ 233 (323)
T TIGR03548 221 ---------INESLLLCIGGFN 233 (323)
T ss_pred ---------ECCCEEEEECCcC
Confidence 1156788888864
No 25
>PLN02153 epithiospecifier protein
Probab=98.90 E-value=7.7e-09 Score=104.55 Aligned_cols=97 Identities=10% Similarity=-0.040 Sum_probs=69.8
Q ss_pred ceEEEecCCCCeEEEcc----cccc---ceeeeecCCeeeeccceeccc-cc---------cccccee-----e-----c
Q 011762 336 KVVEFELPRQQCVVYLD----LKRE---ECAHLFPAGRIYSQAFHLGGQ-GF---------FLSAHCN-----M-----D 388 (478)
Q Consensus 336 ~~v~~y~p~~~~W~~l~----~~r~---~~~~~~~~~~iY~~~~v~GG~-~~---------~~~~~~~-----m-----~ 388 (478)
+.+.+||+.+++|..++ .+|. .|++++++++|| ++||. +. ......| | .
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iy----v~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p 125 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLY----IFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGP 125 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEE----EECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCC
Confidence 47899999999999832 2332 688899999999 99996 11 1223445 5 6
Q ss_pred cCCceeEEEEEeceec--cC-----------CcceeeeceeeeeecC---CcceeccCC---Cceeeeccccc
Q 011762 389 QQSSFHCFGLFLGMQE--KG-----------SVSFAVDYEFAARIKP---TEEYVSKYK---GNYTFTGGKAV 442 (478)
Q Consensus 389 ~~R~~~~~~~l~g~l~--~~-----------~~~s~v~~~~~E~Ydp---~W~~v~~m~---~~~~~~~~~~~ 442 (478)
.+|..|++++++++|+ .| .+.. | |+||| +|+.+++++ .++..++.+++
T Consensus 126 ~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~-v-----~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~ 192 (341)
T PLN02153 126 EARTFHSMASDENHVYVFGGVSKGGLMKTPERFRT-I-----EAYNIADGKWVQLPDPGENFEKRGGAGFAVV 192 (341)
T ss_pred CCceeeEEEEECCEEEEECCccCCCccCCCcccce-E-----EEEECCCCeEeeCCCCCCCCCCCCcceEEEE
Confidence 7899999999999992 11 1223 4 99999 899999886 55665555444
No 26
>PLN02193 nitrile-specifier protein
Probab=98.80 E-value=2.3e-08 Score=105.29 Aligned_cols=97 Identities=10% Similarity=-0.101 Sum_probs=70.0
Q ss_pred ceEEEecCCCCeEEEcc------c-cccceeeeecCCeeeeccceeccc-cc---------cccccee-----e---ccC
Q 011762 336 KVVEFELPRQQCVVYLD------L-KREECAHLFPAGRIYSQAFHLGGQ-GF---------FLSAHCN-----M---DQQ 390 (478)
Q Consensus 336 ~~v~~y~p~~~~W~~l~------~-~r~~~~~~~~~~~iY~~~~v~GG~-~~---------~~~~~~~-----m---~~~ 390 (478)
+.+++||+.+++|..++ . .|..+++++++++|| ++||. +. .+....| | +.+
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lY----vfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~ 268 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLY----VFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTP 268 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEE----EECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCC
Confidence 46899999999999732 2 245788899999999 99997 21 1223445 4 688
Q ss_pred CceeEEEEEeceec--c-----CCcceeeeceeeeeecC---Ccceecc---CCCceeeeccccc
Q 011762 391 SSFHCFGLFLGMQE--K-----GSVSFAVDYEFAARIKP---TEEYVSK---YKGNYTFTGGKAV 442 (478)
Q Consensus 391 R~~~~~~~l~g~l~--~-----~~~~s~v~~~~~E~Ydp---~W~~v~~---m~~~~~~~~~~~~ 442 (478)
|..|++++++++|+ . ..+.. + ++||| +|+.+++ ++.++..++.+++
T Consensus 269 R~~h~~~~~~~~iYv~GG~~~~~~~~~-~-----~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~ 327 (470)
T PLN02193 269 RSFHSMAADEENVYVFGGVSATARLKT-L-----DSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV 327 (470)
T ss_pred ccceEEEEECCEEEEECCCCCCCCcce-E-----EEEECCCCEEEeCCCCCCCCCCCCCcEEEEE
Confidence 99999999999992 1 13334 5 99999 9999886 5566665554444
No 27
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.71 E-value=5.2e-08 Score=99.85 Aligned_cols=117 Identities=15% Similarity=0.039 Sum_probs=78.0
Q ss_pred eeEeeeccc--ceEEEecCC--CCeEEE---cc-ccccceeeeecCCeeeeccceeccccc----------------ccc
Q 011762 327 ERAYKYRPV--KVVEFELPR--QQCVVY---LD-LKREECAHLFPAGRIYSQAFHLGGQGF----------------FLS 382 (478)
Q Consensus 327 ~~i~~~~~~--~~v~~y~p~--~~~W~~---l~-~~r~~~~~~~~~~~iY~~~~v~GG~~~----------------~~~ 382 (478)
+.||+.++. +.+..||+. +++|.. +| .+|..++++++++.|| ++||+.. ...
T Consensus 39 ~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IY----V~GG~~~~~~~~~~~~~~~v~~YD~~ 114 (376)
T PRK14131 39 NTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLY----VFGGIGKTNSEGSPQVFDDVYKYDPK 114 (376)
T ss_pred CEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEE----EEcCCCCCCCCCceeEcccEEEEeCC
Confidence 456774443 567788876 578997 55 3688899999999999 9999721 111
Q ss_pred ccee------eccCCceeEEEE-Eeceec--cCC--------------------------------------cceeeece
Q 011762 383 AHCN------MDQQSSFHCFGL-FLGMQE--KGS--------------------------------------VSFAVDYE 415 (478)
Q Consensus 383 ~~~~------m~~~R~~~~~~~-l~g~l~--~~~--------------------------------------~~s~v~~~ 415 (478)
.+.| +..+|..+++++ .+|+|+ .|. ....|
T Consensus 115 ~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v--- 191 (376)
T PRK14131 115 TNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEV--- 191 (376)
T ss_pred CCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceE---
Confidence 2334 233344566665 799992 111 01225
Q ss_pred eeeeecC---CcceeccCCC-ceeeeccccccccccCCCCCceeeecCCcceecce
Q 011762 416 FAARIKP---TEEYVSKYKG-NYTFTGGKAVGYRNLFGIPWTAFMADDSIYFINGN 467 (478)
Q Consensus 416 ~~E~Ydp---~W~~v~~m~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (478)
++||| +|+.+++||. ++..++++.+ ++.||++||-
T Consensus 192 --~~YD~~t~~W~~~~~~p~~~~~~~a~v~~---------------~~~iYv~GG~ 230 (376)
T PRK14131 192 --LSYDPSTNQWKNAGESPFLGTAGSAVVIK---------------GNKLWLINGE 230 (376)
T ss_pred --EEEECCCCeeeECCcCCCCCCCcceEEEE---------------CCEEEEEeee
Confidence 99999 8999999996 6666655555 5667777774
No 28
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=98.40 E-value=7.9e-07 Score=83.08 Aligned_cols=47 Identities=15% Similarity=0.194 Sum_probs=40.7
Q ss_pred eeEeeecc-------cceEEEecCCCCeEEE------ccccccceeeeecCCeeeeccceeccc
Q 011762 327 ERAYKYRP-------VKVVEFELPRQQCVVY------LDLKREECAHLFPAGRIYSQAFHLGGQ 377 (478)
Q Consensus 327 ~~i~~~~~-------~~~v~~y~p~~~~W~~------l~~~r~~~~~~~~~~~iY~~~~v~GG~ 377 (478)
+.+|++|+ .+.+.+|||.++.|.. +|..|.+|+++|+++..| |.||+
T Consensus 89 d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~My----iFGGy 148 (392)
T KOG4693|consen 89 DKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMY----IFGGY 148 (392)
T ss_pred ceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEE----EecCh
Confidence 45677554 3678999999999987 789999999999999999 99997
No 29
>PF13964 Kelch_6: Kelch motif
Probab=98.26 E-value=1.1e-06 Score=62.43 Aligned_cols=47 Identities=23% Similarity=0.221 Sum_probs=37.5
Q ss_pred cccceeeeecCCeeeeccceecccccccccceeeccCCceeEEEEEeceeccCCcceeeeceeeeeecC---CcceeccC
Q 011762 354 KREECAHLFPAGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARIKP---TEEYVSKY 430 (478)
Q Consensus 354 ~r~~~~~~~~~~~iY~~~~v~GG~~~~~~~~~~m~~~R~~~~~~~l~g~l~~~~~~s~v~~~~~E~Ydp---~W~~v~~m 430 (478)
+|.+|++|+++++|| |+||.... ....+. | |+||| +|+.+++|
T Consensus 1 pR~~~s~v~~~~~iy----v~GG~~~~------------------------~~~~~~-v-----~~yd~~t~~W~~~~~m 46 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIY----VFGGYDNS------------------------GKYSND-V-----ERYDPETNTWEQLPPM 46 (50)
T ss_pred CCccCEEEEECCEEE----EECCCCCC------------------------CCcccc-E-----EEEcCCCCcEEECCCC
Confidence 588999999999999 99998321 011234 6 99999 99999999
Q ss_pred CCce
Q 011762 431 KGNY 434 (478)
Q Consensus 431 ~~~~ 434 (478)
|.||
T Consensus 47 p~pR 50 (50)
T PF13964_consen 47 PTPR 50 (50)
T ss_pred CCCC
Confidence 9886
No 30
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.17 E-value=3.6e-06 Score=89.22 Aligned_cols=97 Identities=20% Similarity=0.247 Sum_probs=69.2
Q ss_pred CCCCccEEEEEe--eEEeehhhhhcCCHHHHHhhcCCCCCCCCceEEEe----------cCCCcHHHHHHHHHHHccCce
Q 011762 64 WSMDLSTVLRVK--TVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLR----------IHASEEAALMELLNFMYSSTL 131 (478)
Q Consensus 64 ~~~~~DV~l~v~--~f~aHr~vLaa~S~yF~~mf~~~~~es~~~~i~l~----------~~~v~~~~f~~lL~fiYtg~i 131 (478)
...+.||||.|+ -|+|||.||+++|++||.+|......+....|.++ .++++|..|+.+|+||||+..
T Consensus 555 ~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt~ 634 (1267)
T KOG0783|consen 555 KDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDTL 634 (1267)
T ss_pred ccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhcccc
Confidence 456789999995 49999999999999999999765443333333322 449999999999999999832
Q ss_pred ecC--c-----------cchHH-------HHHHHHhhcchhhHHHHHHH
Q 011762 132 STT--T-----------PTALL-------DVLMAADKFEVASCMRYCSR 160 (478)
Q Consensus 132 ~i~--~-----------~~~v~-------~lL~aA~~l~i~~L~~~C~~ 160 (478)
--+ + ++|.. .+...+.+|++.+|...-..
T Consensus 635 ~~P~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~~s 683 (1267)
T KOG0783|consen 635 LSPWHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFSVS 683 (1267)
T ss_pred cCCccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhhhh
Confidence 110 0 13333 37778888888877764433
No 31
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.11 E-value=3.4e-06 Score=82.21 Aligned_cols=140 Identities=16% Similarity=0.068 Sum_probs=103.8
Q ss_pred EEEEE-eeEEeehhhhhcCCHHHHHhhcCCCCCCC--CceEEEecCCCcHHHHHHHHHHHccCceecCccchHHHHHHHH
Q 011762 70 TVLRV-KTVHISSPILAAKSPFFYKLFSNGMRESE--QRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAA 146 (478)
Q Consensus 70 V~l~v-~~f~aHr~vLaa~S~yF~~mf~~~~~es~--~~~i~l~~~~v~~~~f~~lL~fiYtg~i~i~~~~~v~~lL~aA 146 (478)
|.+-+ ..+|||++++. +.+||+.||.|++.|+. +....+..++....+.+.+++|+|+.+.++.. +-+.+++..|
T Consensus 295 iql~~~~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~-~~A~dvll~a 372 (516)
T KOG0511|consen 295 IQLPEEDRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIF-DVASDVLLFA 372 (516)
T ss_pred ccccccccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchH-HHHhhHHHHh
Confidence 44444 35999999996 46799999999999954 22333333477889999999999999999986 8899999999
Q ss_pred hhcchh--h-HHHHHHHhhhcCC---CCHHhHHHHHhccchhhhhhchHHHHHHHHHHHHHcHHHHhccchhhhcCC
Q 011762 147 DKFEVA--S-CMRYCSRLLRNLP---MTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLP 217 (478)
Q Consensus 147 ~~l~i~--~-L~~~C~~~L~~~~---l~~~n~l~i~~~A~~~~~~~~~~~L~~~~~~fI~~nf~~v~~~s~~fl~L~ 217 (478)
+++.+. . |+.+....+.+ . ++.-|++.++..+-. -....|.+.+..|+..|...+.. .|++...-
T Consensus 373 d~lal~~dr~Lkt~as~~itq-~~e~id~y~V~dIl~~~wd----~~~~rlEqfa~~~~a~hl~~l~~-dPe~~~~~ 443 (516)
T KOG0511|consen 373 DKLALADDRLLKTAASAEITQ-WLELIDMYGVLDILEYCWD----LVACRLEQFAETHEARHLLLLLP-DPEGDSSL 443 (516)
T ss_pred hHhhhhhhhhhhhhhhHHHHH-HHHHHHhhhHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHhcC-CchhhHHH
Confidence 999765 2 45554444444 2 334456666655432 36788999999999999999988 88876543
No 32
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.06 E-value=3.4e-06 Score=58.85 Aligned_cols=44 Identities=23% Similarity=0.232 Sum_probs=34.5
Q ss_pred cccceeeeecCCeeeeccceecccccccccceeeccCCceeEEEEEeceeccCCcceeeeceeeeeecC---CcceeccC
Q 011762 354 KREECAHLFPAGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARIKP---TEEYVSKY 430 (478)
Q Consensus 354 ~r~~~~~~~~~~~iY~~~~v~GG~~~~~~~~~~m~~~R~~~~~~~l~g~l~~~~~~s~v~~~~~E~Ydp---~W~~v~~m 430 (478)
+|.+|++++++++|| ++||.... ...+++ | |+||| +|+.+++|
T Consensus 1 pR~~~~~~~~~~~iy----v~GG~~~~------------------------~~~~~~-v-----~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIY----VIGGYDGN------------------------NQPTNS-V-----EVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEE----EEEEBEST------------------------SSBEEE-E-----EEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEE----EEeeeccc------------------------Cceeee-E-----EEEeCCCCEEEEcCCC
Confidence 588999999999999 99998321 011234 6 99999 99999999
Q ss_pred C
Q 011762 431 K 431 (478)
Q Consensus 431 ~ 431 (478)
|
T Consensus 47 p 47 (47)
T PF01344_consen 47 P 47 (47)
T ss_dssp S
T ss_pred C
Confidence 7
No 33
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.91 E-value=4.5e-05 Score=80.56 Aligned_cols=105 Identities=8% Similarity=-0.062 Sum_probs=74.3
Q ss_pred eEeeeccc-------ceEEEecCCCCeEEE------ccccccceeeeecCCeeeeccceecccccc--ccccee------
Q 011762 328 RAYKYRPV-------KVVEFELPRQQCVVY------LDLKREECAHLFPAGRIYSQAFHLGGQGFF--LSAHCN------ 386 (478)
Q Consensus 328 ~i~~~~~~-------~~v~~y~p~~~~W~~------l~~~r~~~~~~~~~~~iY~~~~v~GG~~~~--~~~~~~------ 386 (478)
.||+.|+. ..+.+||+.+++|.. .|.+|.+|++++.++++| |.||.+.. ..+.+|
T Consensus 124 ~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~----vfGG~~~~~~~~ndl~i~d~~~ 199 (482)
T KOG0379|consen 124 KLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLV----VFGGIGGTGDSLNDLHIYDLET 199 (482)
T ss_pred eEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEE----EECCccCcccceeeeeeecccc
Confidence 45665543 489999999999997 578899999999999999 99998221 334443
Q ss_pred -----------eccCCceeEEEEEecee---ccCC----cceeeeceeeeeecC---Ccceec---cCCCceeeecccc
Q 011762 387 -----------MDQQSSFHCFGLFLGMQ---EKGS----VSFAVDYEFAARIKP---TEEYVS---KYKGNYTFTGGKA 441 (478)
Q Consensus 387 -----------m~~~R~~~~~~~l~g~l---~~~~----~~s~v~~~~~E~Ydp---~W~~v~---~m~~~~~~~~~~~ 441 (478)
-..||.+|++++.++++ +.+. ..+-+ -++|. +|.... .+|.+|.+|..+.
T Consensus 200 ~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~-----~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~ 273 (482)
T KOG0379|consen 200 STWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDV-----HILDLSTWEWKLLPTGGDLPSPRSGHSLTV 273 (482)
T ss_pred ccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecce-----EeeecccceeeeccccCCCCCCcceeeeEE
Confidence 57799999999999998 2221 22213 66777 555333 4466777665543
No 34
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=97.82 E-value=7.9e-05 Score=69.62 Aligned_cols=92 Identities=16% Similarity=0.290 Sum_probs=77.5
Q ss_pred EEEEEe--eEEeehhhhhcCCHHHHHhhcCCCC--CCCCceEEEecCCCcHHHHHHHHHHHccCceecCc-cchHHHHHH
Q 011762 70 TVLRVK--TVHISSPILAAKSPFFYKLFSNGMR--ESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTT-PTALLDVLM 144 (478)
Q Consensus 70 V~l~v~--~f~aHr~vLaa~S~yF~~mf~~~~~--es~~~~i~l~~~~v~~~~f~~lL~fiYtg~i~i~~-~~~v~~lL~ 144 (478)
|.|.|| .|.-++.-|.....||++|+.+++. ...++.|-| +=+|.-|..||+||-.|.+.+++ ...+.+|+.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI---DRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~ 83 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI---DRSPKHFDTILNFMRDGDVDLPESEKELKELLR 83 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe---cCChhHHHHHHHhhhcccccCccchHHHHHHHH
Confidence 446675 3999999999999999999999863 223456777 68999999999999999988765 246789999
Q ss_pred HHhhcchhhHHHHHHHhhhc
Q 011762 145 AADKFEVASCMRYCSRLLRN 164 (478)
Q Consensus 145 aA~~l~i~~L~~~C~~~L~~ 164 (478)
-|.+|.+++|++.|..-+..
T Consensus 84 EA~fYlL~~Lv~~C~~~i~~ 103 (230)
T KOG2716|consen 84 EAEFYLLDGLVELCQSAIAR 103 (230)
T ss_pred HHHHhhHHHHHHHHHHHhhh
Confidence 99999999999999998766
No 35
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.74 E-value=1.1e-05 Score=75.45 Aligned_cols=97 Identities=21% Similarity=0.307 Sum_probs=68.8
Q ss_pred EEeehhhhhcCCHHHHHhhcCCCCCCC---------CceEEEecCCCcHHHHH-HHHHHHccCceecCc-----------
Q 011762 77 VHISSPILAAKSPFFYKLFSNGMRESE---------QRYVTLRIHASEEAALM-ELLNFMYSSTLSTTT----------- 135 (478)
Q Consensus 77 f~aHr~vLaa~S~yF~~mf~~~~~es~---------~~~i~l~~~~v~~~~f~-~lL~fiYtg~i~i~~----------- 135 (478)
++||++|.|++|++||.++....+|.. ..+|.+.. -+-|.+|. .++.++||+.++++.
T Consensus 263 ikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE-~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSL 341 (401)
T KOG2838|consen 263 IKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDE-LIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSL 341 (401)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechh-hhcchhhhhhhhhhheecccchhhcccCCcccccH
Confidence 899999999999999999975444332 24566653 34455554 589999999876431
Q ss_pred ----------------cchHHHHHHHHhhcchhhHHHHHHHhhhcCCCCHHhHHHH
Q 011762 136 ----------------PTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLY 175 (478)
Q Consensus 136 ----------------~~~v~~lL~aA~~l~i~~L~~~C~~~L~~~~l~~~n~l~i 175 (478)
...+++|++.|.+|.+.-|.++|.+.+.. ....++...+
T Consensus 342 SeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~e~Vir~-acaadlsn~c 396 (401)
T KOG2838|consen 342 SEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQACEDVIRK-ACAADLSNGC 396 (401)
T ss_pred HHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhccccc
Confidence 02256788888888888888888888887 5655554433
No 36
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.53 E-value=6.9e-05 Score=70.27 Aligned_cols=101 Identities=10% Similarity=0.027 Sum_probs=68.5
Q ss_pred ccchhhhcccCCCCCCCccEEEEE--eeEEeehhhhhcCCHHHHHhhcCCCCCCCCceEEEecCCCcHHHHHHHHHHHcc
Q 011762 51 QCGEEATGNIDPAWSMDLSTVLRV--KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYS 128 (478)
Q Consensus 51 ~~~~l~~l~~~~~~~~~~DV~l~v--~~f~aHr~vLaa~S~yF~~mf~~~~~es~~~~i~l~~~~v~~~~f~~lL~fiYt 128 (478)
...+++.+.+......-.|+-|.. ..|+|||++||+++|+|+.+.+++-.........++..+++..+|+.+|+|+||
T Consensus 114 a~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~t 193 (401)
T KOG2838|consen 114 ANSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLIT 193 (401)
T ss_pred hhHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHh
Confidence 456777777776555555666555 459999999999999999988764322222222233338899999999999999
Q ss_pred CceecCc--cchHHHHHHHHhhcch
Q 011762 129 STLSTTT--PTALLDVLMAADKFEV 151 (478)
Q Consensus 129 g~i~i~~--~~~v~~lL~aA~~l~i 151 (478)
|+.-... ..|+.-|-+++.-|+.
T Consensus 194 gEfgmEd~~fqn~diL~QL~edFG~ 218 (401)
T KOG2838|consen 194 GEFGMEDLGFQNSDILEQLCEDFGC 218 (401)
T ss_pred cccchhhcCCchHHHHHHHHHhhCC
Confidence 9875432 1455555555555553
No 37
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.51 E-value=9.8e-05 Score=59.85 Aligned_cols=86 Identities=16% Similarity=0.269 Sum_probs=64.3
Q ss_pred EEEEEe--eEEeehhhhh-cCCHHHHHhhcCC---CCCCCCceEEEecCCCcHHHHHHHHHHHcc-CceecCccchHHHH
Q 011762 70 TVLRVK--TVHISSPILA-AKSPFFYKLFSNG---MRESEQRYVTLRIHASEEAALMELLNFMYS-STLSTTTPTALLDV 142 (478)
Q Consensus 70 V~l~v~--~f~aHr~vLa-a~S~yF~~mf~~~---~~es~~~~i~l~~~~v~~~~f~~lL~fiYt-g~i~i~~~~~v~~l 142 (478)
|+|.|| .|..-+..|. ....+|.+|+.+. .....+.++-| +-+|..|+.||+|+.+ +.+..+....+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi---DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI---DRDPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE---SS-HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe---ccChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 678885 3888888887 5567999999864 33445677777 6799999999999999 67776533678999
Q ss_pred HHHHhhcchhhH-HHHH
Q 011762 143 LMAADKFEVASC-MRYC 158 (478)
Q Consensus 143 L~aA~~l~i~~L-~~~C 158 (478)
++-|.+|+++.+ ++.|
T Consensus 78 ~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 78 LEEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHHT-HHHHBHHC
T ss_pred HHHHHHcCCCccccCCC
Confidence 999999999999 7766
No 38
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.44 E-value=0.00035 Score=73.92 Aligned_cols=97 Identities=13% Similarity=-0.059 Sum_probs=76.7
Q ss_pred eEEEecCCCCeEEE------ccccccceeeeecCCeeeeccceecccc-----------ccccccee--------eccCC
Q 011762 337 VVEFELPRQQCVVY------LDLKREECAHLFPAGRIYSQAFHLGGQG-----------FFLSAHCN--------MDQQS 391 (478)
Q Consensus 337 ~v~~y~p~~~~W~~------l~~~r~~~~~~~~~~~iY~~~~v~GG~~-----------~~~~~~~~--------m~~~R 391 (478)
.+..+|..+..|.. .|.+|.+|.++++++.|| ++||.. +...+..| +..+|
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~----lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r 164 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLY----LFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPR 164 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEECCeEE----EEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCc
Confidence 48888999999987 577899999999999999 999972 12234555 79999
Q ss_pred ceeEEEEEecee---c----cC-CcceeeeceeeeeecC---Ccceec---cCCCceeeecccccc
Q 011762 392 SFHCFGLFLGMQ---E----KG-SVSFAVDYEFAARIKP---TEEYVS---KYKGNYTFTGGKAVG 443 (478)
Q Consensus 392 ~~~~~~~l~g~l---~----~~-~~~s~v~~~~~E~Ydp---~W~~v~---~m~~~~~~~~~~~~~ 443 (478)
.+|++++.+.++ | .+ .+.. + -.||+ +|..+. +-|.||..|+.++++
T Consensus 165 ~~Hs~~~~g~~l~vfGG~~~~~~~~nd-l-----~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~ 224 (482)
T KOG0379|consen 165 AGHSATVVGTKLVVFGGIGGTGDSLND-L-----HIYDLETSTWSELDTQGEAPSPRYGHAMVVVG 224 (482)
T ss_pred ccceEEEECCEEEEECCccCcccceee-e-----eeeccccccceecccCCCCCCCCCCceEEEEC
Confidence 999999999998 1 22 2334 4 88999 999776 667889999888775
No 39
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.35 E-value=0.00031 Score=68.49 Aligned_cols=88 Identities=10% Similarity=0.271 Sum_probs=70.4
Q ss_pred eeEEeehhhhhcCCHHHHHhhcCCCCC-CCCceEEEecCCCcHHHHHHHHHHHccCceecCccchHHHHHHHHhhcchhh
Q 011762 75 KTVHISSPILAAKSPFFYKLFSNGMRE-SEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVAS 153 (478)
Q Consensus 75 ~~f~aHr~vLaa~S~yF~~mf~~~~~e-s~~~~i~l~~~~v~~~~f~~lL~fiYtg~i~i~~~~~v~~lL~aA~~l~i~~ 153 (478)
++|.|.+-+|-..=.||+..+.....+ ....+|.|.. ..+-.+|+=+++|+......++. .||..||.-|++|||++
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisV-hCDv~iF~WLm~yv~~~~p~l~~-~NvvsIliSS~FL~M~~ 91 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISV-HCDVHIFEWLMRYVKGEPPSLTP-SNVVSILISSEFLQMES 91 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEE-ecChhHHHHHHHHhhcCCCcCCc-CcEEEeEehhhhhccHH
Confidence 369999999999999999999652211 1223455542 57889999999999998888886 89999999999999998
Q ss_pred HHHHHHHhhhc
Q 011762 154 CMRYCSRLLRN 164 (478)
Q Consensus 154 L~~~C~~~L~~ 164 (478)
|++.|..|+.+
T Consensus 92 Lve~cl~y~~~ 102 (317)
T PF11822_consen 92 LVEECLQYCHD 102 (317)
T ss_pred HHHHHHHHHHH
Confidence 88887777755
No 40
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.34 E-value=0.00059 Score=64.24 Aligned_cols=98 Identities=10% Similarity=-0.025 Sum_probs=70.6
Q ss_pred eEEEecCCCCeEEEcc----------------ccccceeeeecCCeeeeccceeccc-----------cccccccee---
Q 011762 337 VVEFELPRQQCVVYLD----------------LKREECAHLFPAGRIYSQAFHLGGQ-----------GFFLSAHCN--- 386 (478)
Q Consensus 337 ~v~~y~p~~~~W~~l~----------------~~r~~~~~~~~~~~iY~~~~v~GG~-----------~~~~~~~~~--- 386 (478)
.|+.+|..+-+|+.|| ..|.+|.++..++++| +.||. .+....+.|
T Consensus 45 DVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~y----vWGGRND~egaCN~Ly~fDp~t~~W~~p 120 (392)
T KOG4693|consen 45 DVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAY----VWGGRNDDEGACNLLYEFDPETNVWKKP 120 (392)
T ss_pred eeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEE----EEcCccCcccccceeeeecccccccccc
Confidence 6778888889999744 3478899999999999 99997 234455666
Q ss_pred -----eccCCceeEEEEEeceec--------cCCcceeeeceeeeeecC---CcceeccCCCce---eeecccccc
Q 011762 387 -----MDQQSSFHCFGLFLGMQE--------KGSVSFAVDYEFAARIKP---TEEYVSKYKGNY---TFTGGKAVG 443 (478)
Q Consensus 387 -----m~~~R~~~~~~~l~g~l~--------~~~~~s~v~~~~~E~Ydp---~W~~v~~m~~~~---~~~~~~~~~ 443 (478)
.+-+|-+|++|++++.++ ..+.++-+ -..|. +|+.+..-..|- -+|.+++.+
T Consensus 121 ~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~-----h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~ 191 (392)
T KOG4693|consen 121 EVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDT-----HVLDFATMTWREMHTKGDPPRWRDFHTASVID 191 (392)
T ss_pred ceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccc-----eeEeccceeeeehhccCCCchhhhhhhhhhcc
Confidence 888999999999999882 12334423 45555 999998665433 356665553
No 41
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=97.27 E-value=0.00034 Score=49.22 Aligned_cols=44 Identities=20% Similarity=0.113 Sum_probs=33.8
Q ss_pred cccceeeeecCCeeeeccceeccc--ccccccceeeccCCceeEEEEEeceeccCCcceeeeceeeeeecC---Ccceec
Q 011762 354 KREECAHLFPAGRIYSQAFHLGGQ--GFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARIKP---TEEYVS 428 (478)
Q Consensus 354 ~r~~~~~~~~~~~iY~~~~v~GG~--~~~~~~~~~m~~~R~~~~~~~l~g~l~~~~~~s~v~~~~~E~Ydp---~W~~v~ 428 (478)
+|..|++++++++|| |+||+ +.. ....+. | +.||+ +|+.++
T Consensus 1 ~r~~hs~~~~~~kiy----v~GG~~~~~~------------------------~~~~~~-v-----~~~d~~t~~W~~~~ 46 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIY----VFGGYGTDNG------------------------GSSSND-V-----WVFDTETNQWTELS 46 (49)
T ss_pred CccceEEEEECCEEE----EECCcccCCC------------------------Ccccce-e-----EEEECCCCEEeecC
Confidence 578899999999999 99998 111 011233 5 99999 999999
Q ss_pred cCC
Q 011762 429 KYK 431 (478)
Q Consensus 429 ~m~ 431 (478)
+|+
T Consensus 47 ~~g 49 (49)
T PF07646_consen 47 PMG 49 (49)
T ss_pred CCC
Confidence 986
No 42
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.11 E-value=0.00024 Score=70.26 Aligned_cols=126 Identities=16% Similarity=0.148 Sum_probs=101.3
Q ss_pred eeEEeehhhhhcCCHHHHHhhcCCCCCCCCceEEEecCCCcHHHHHHHHHHHccCceecCccchHH---HHHHHHhhcch
Q 011762 75 KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALL---DVLMAADKFEV 151 (478)
Q Consensus 75 ~~f~aHr~vLaa~S~yF~~mf~~~~~es~~~~i~l~~~~v~~~~f~~lL~fiYtg~i~i~~~~~v~---~lL~aA~~l~i 151 (478)
+.+.+|+++++++|+.|++|+.....+...+.+.+. +.++..++.+..|.|+..-.... +... .++.+|..++.
T Consensus 110 g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~--d~~~~~~~~~~~F~~~~s~~~~~-~~~~~~~~~~a~~f~~~~ 186 (297)
T KOG1987|consen 110 GFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLL--EEKPEVLEALNGFQVLPSQVSSV-ERIFEKHPDLAAAFKYKN 186 (297)
T ss_pred cEEEcCceEEEeeecceeeecccccchhcccccccc--ccchhhHhhhceEEEeccchHHH-HHhhcCChhhhhcccccc
Confidence 348999999999999999999987766666666776 88899999999999996543332 3443 88899999999
Q ss_pred hhHHHHHHHhhhcCCCCHHhHHHHHhccchhhhhhchHHHHHHHHHHHHH--cHHHHhc
Q 011762 152 ASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAA--RYKDISK 208 (478)
Q Consensus 152 ~~L~~~C~~~L~~~~l~~~n~l~i~~~A~~~~~~~~~~~L~~~~~~fI~~--nf~~v~~ 208 (478)
+.|+..|...+.. .+...+....+..+..+ ....+...+..++.. ++..+..
T Consensus 187 ~~lk~~~~~~l~~-~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~ld~l~~ 240 (297)
T KOG1987|consen 187 RHLKLACMPVLLS-LIETLNVSQSLQEASNY----DLKEAKSALTYVIAAGFKLDWLEK 240 (297)
T ss_pred HHHHHHHHHHHHH-HHHhhhhcccHHHhchh----HHHHHHHHHHHHHhccchHhHHHH
Confidence 9999999999999 68777777777777643 677788888888877 6666654
No 43
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=96.99 E-value=0.0019 Score=64.47 Aligned_cols=117 Identities=9% Similarity=-0.082 Sum_probs=74.8
Q ss_pred ceEEEecCCCCeEEE-----ccccccceeeeec-CCeeeeccceeccc-------cccccccee----------------
Q 011762 336 KVVEFELPRQQCVVY-----LDLKREECAHLFP-AGRIYSQAFHLGGQ-------GFFLSAHCN---------------- 386 (478)
Q Consensus 336 ~~v~~y~p~~~~W~~-----l~~~r~~~~~~~~-~~~iY~~~~v~GG~-------~~~~~~~~~---------------- 386 (478)
+.+..||.+++.|.. -|.+|+.|.+|++ .|.+| +.||. .|.-....|
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~----~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g 173 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILW----LFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG 173 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEE----EeccccCCcchhhhhhhhheeeeeeccchheeeccCC
Confidence 567789999999998 4677998877765 48999 99995 333444455
Q ss_pred eccCCceeEEEEEecee----c-cCCcceeeeceeeeeecC---CcceeccC---CCceeeeccccccccccCCCCCcee
Q 011762 387 MDQQSSFHCFGLFLGMQ----E-KGSVSFAVDYEFAARIKP---TEEYVSKY---KGNYTFTGGKAVGYRNLFGIPWTAF 455 (478)
Q Consensus 387 m~~~R~~~~~~~l~g~l----~-~~~~~s~v~~~~~E~Ydp---~W~~v~~m---~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (478)
-+.+|++|-+++-..+| | ..+.....=|+=+-+||. +|+.+.|- |.||+... .+|..
T Consensus 174 ~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq-~~vtp----------- 241 (521)
T KOG1230|consen 174 GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQ-FSVTP----------- 241 (521)
T ss_pred CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcce-EEecC-----------
Confidence 58899999999888877 1 111111111111166666 99999883 23443211 13322
Q ss_pred eecCCcceecceeee
Q 011762 456 MADDSIYFINGNLHL 470 (478)
Q Consensus 456 ~~~~~~~~~~~~~~~ 470 (478)
.+.||+-||-+..
T Consensus 242 --qg~i~vyGGYsK~ 254 (521)
T KOG1230|consen 242 --QGGIVVYGGYSKQ 254 (521)
T ss_pred --CCcEEEEcchhHh
Confidence 5677777776654
No 44
>smart00612 Kelch Kelch domain.
Probab=96.75 E-value=0.0022 Score=43.96 Aligned_cols=31 Identities=19% Similarity=0.096 Sum_probs=27.2
Q ss_pred cceEEEecCCCCeEEE---ccccccceeeeecCC
Q 011762 335 VKVVEFELPRQQCVVY---LDLKREECAHLFPAG 365 (478)
Q Consensus 335 ~~~v~~y~p~~~~W~~---l~~~r~~~~~~~~~~ 365 (478)
...+++|||.+++|.. |+.+|..+++++++|
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred eeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 4689999999999987 888899999988775
No 45
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=96.75 E-value=0.0052 Score=61.40 Aligned_cols=64 Identities=11% Similarity=-0.083 Sum_probs=51.6
Q ss_pred ceEEEecCCCCeEEE-----ccccccceeeeecCCeeeeccceeccc-----cccccccee-----------------ec
Q 011762 336 KVVEFELPRQQCVVY-----LDLKREECAHLFPAGRIYSQAFHLGGQ-----GFFLSAHCN-----------------MD 388 (478)
Q Consensus 336 ~~v~~y~p~~~~W~~-----l~~~r~~~~~~~~~~~iY~~~~v~GG~-----~~~~~~~~~-----------------m~ 388 (478)
+.+..+|..+++|.. -|.+|++|-+++..+.|. +.||+ .....+.+| -+
T Consensus 154 kD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~li----lFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~P 229 (521)
T KOG1230|consen 154 KDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLI----LFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGP 229 (521)
T ss_pred hheeeeeeccchheeeccCCCCCCCccceeEEeeeeEE----EEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCC
Confidence 577778999999998 578899999999999999 99997 122233333 58
Q ss_pred cCCceeEEEEE-ecee
Q 011762 389 QQSSFHCFGLF-LGMQ 403 (478)
Q Consensus 389 ~~R~~~~~~~l-~g~l 403 (478)
.+|++|++.+- +|.|
T Consensus 230 tpRSGcq~~vtpqg~i 245 (521)
T KOG1230|consen 230 TPRSGCQFSVTPQGGI 245 (521)
T ss_pred CCCCcceEEecCCCcE
Confidence 99999999988 7777
No 46
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=96.75 E-value=0.0029 Score=64.60 Aligned_cols=65 Identities=14% Similarity=0.041 Sum_probs=51.3
Q ss_pred cceEEEecCCCCeEEE------ccccccceeeeecCCeeeeccceeccc---cccc------cccee-------------
Q 011762 335 VKVVEFELPRQQCVVY------LDLKREECAHLFPAGRIYSQAFHLGGQ---GFFL------SAHCN------------- 386 (478)
Q Consensus 335 ~~~v~~y~p~~~~W~~------l~~~r~~~~~~~~~~~iY~~~~v~GG~---~~~~------~~~~~------------- 386 (478)
.++++.||..+++|.. +|.+-..||.+..+++|| ++||. |.+. ....|
T Consensus 56 iDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtril----vFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG 131 (830)
T KOG4152|consen 56 IDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRIL----VFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNG 131 (830)
T ss_pred hhhhhhhccccceeecchhcCCCCCchhhcceEecCceEE----EEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCC
Confidence 4789999999999987 677777899999999999 99995 3221 12233
Q ss_pred -eccCCceeEEEEEecee
Q 011762 387 -MDQQSSFHCFGLFLGMQ 403 (478)
Q Consensus 387 -m~~~R~~~~~~~l~g~l 403 (478)
..-+|-+|++.+.+++-
T Consensus 132 ~pPCPRlGHSFsl~gnKc 149 (830)
T KOG4152|consen 132 PPPCPRLGHSFSLVGNKC 149 (830)
T ss_pred CCCCCccCceeEEeccEe
Confidence 67889999998887775
No 47
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=96.45 E-value=0.007 Score=47.95 Aligned_cols=72 Identities=22% Similarity=0.287 Sum_probs=55.8
Q ss_pred eEEeehhhhhcCCHHHHHhhcCCCC--CCCCceEEEecCCCcHHHHHHHHHHH-----ccCc------eecCccchHHHH
Q 011762 76 TVHISSPILAAKSPFFYKLFSNGMR--ESEQRYVTLRIHASEEAALMELLNFM-----YSST------LSTTTPTALLDV 142 (478)
Q Consensus 76 ~f~aHr~vLaa~S~yF~~mf~~~~~--es~~~~i~l~~~~v~~~~f~~lL~fi-----Ytg~------i~i~~~~~v~~l 142 (478)
+|-.-|- .|.-|+-.|+||++... |...++|.++ +++...++.+.+|+ |++. .+|.. +-+++|
T Consensus 28 efiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~--di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ipp-emaleL 103 (112)
T KOG3473|consen 28 EFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFR--DIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPP-EMALEL 103 (112)
T ss_pred EEEEeeh-hhhhhhHHHHHHcCCccccccccceEEec--cchHHHHHHHHHHhhheeeeccccccCCCCCCCH-HHHHHH
Confidence 3555444 45679999999998654 4556789998 99999999999998 6665 33453 889999
Q ss_pred HHHHhhcch
Q 011762 143 LMAADKFEV 151 (478)
Q Consensus 143 L~aA~~l~i 151 (478)
|.+|++|.+
T Consensus 104 L~aAn~Lec 112 (112)
T KOG3473|consen 104 LMAANYLEC 112 (112)
T ss_pred HHHhhhhcC
Confidence 999999853
No 48
>smart00612 Kelch Kelch domain.
Probab=96.29 E-value=0.0035 Score=42.99 Aligned_cols=25 Identities=8% Similarity=-0.027 Sum_probs=22.2
Q ss_pred eeecC---CcceeccCCCceeeeccccc
Q 011762 418 ARIKP---TEEYVSKYKGNYTFTGGKAV 442 (478)
Q Consensus 418 E~Ydp---~W~~v~~m~~~~~~~~~~~~ 442 (478)
|+||| +|+.+++|+.++..++++++
T Consensus 18 ~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 45 (47)
T smart00612 18 EVYDPETNKWTPLPSMPTPRSGHGVAVI 45 (47)
T ss_pred EEECCCCCeEccCCCCCCccccceEEEe
Confidence 99999 99999999999988776555
No 49
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=96.07 E-value=0.0051 Score=43.06 Aligned_cols=45 Identities=13% Similarity=0.035 Sum_probs=24.7
Q ss_pred cccceeeeec-CCeeeeccceecccccccccceeeccCCceeEEEEEeceeccCCcceeeeceeeeeecC---Ccceecc
Q 011762 354 KREECAHLFP-AGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARIKP---TEEYVSK 429 (478)
Q Consensus 354 ~r~~~~~~~~-~~~iY~~~~v~GG~~~~~~~~~~m~~~R~~~~~~~l~g~l~~~~~~s~v~~~~~E~Ydp---~W~~v~~ 429 (478)
+|.+|+++.+ ++.|| ++||..... ..++. + +.||+ +|+.+++
T Consensus 1 pR~~h~~~~~~~~~i~----v~GG~~~~~------------------------~~~~d-~-----~~~d~~~~~W~~~~~ 46 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIY----VFGGRDSSG------------------------SPLND-L-----WIFDIETNTWTRLPS 46 (49)
T ss_dssp --BS-EEEEE-TTEEE----EE--EEE-T------------------------EE----E-----EEEETTTTEEEE--S
T ss_pred CcceEEEEEEeCCeEE----EECCCCCCC------------------------cccCC-E-----EEEECCCCEEEECCC
Confidence 5788888888 58999 999972110 01334 4 89999 9999999
Q ss_pred CCC
Q 011762 430 YKG 432 (478)
Q Consensus 430 m~~ 432 (478)
||.
T Consensus 47 ~P~ 49 (49)
T PF13418_consen 47 MPS 49 (49)
T ss_dssp S--
T ss_pred CCC
Confidence 873
No 50
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.00 E-value=0.019 Score=47.40 Aligned_cols=78 Identities=10% Similarity=0.189 Sum_probs=54.7
Q ss_pred EEEEE---eeEEeehhhhhcCCHHHHHhhcCCCCCCC-CceEEEecCCCcHHHHHHHHHHHccCcee-------------
Q 011762 70 TVLRV---KTVHISSPILAAKSPFFYKLFSNGMRESE-QRYVTLRIHASEEAALMELLNFMYSSTLS------------- 132 (478)
Q Consensus 70 V~l~v---~~f~aHr~vLaa~S~yF~~mf~~~~~es~-~~~i~l~~~~v~~~~f~~lL~fiYtg~i~------------- 132 (478)
|+|.. ..|.+.+.+. ..|.-++.|+.+...+.. ...|.++ +++..+|+.+++|++.-+-.
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~--~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLP--NVTSKILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCC--CcCHHHHHHHHHHHHHcccCCCCccccccccHH
Confidence 55555 2588998877 469999999976432221 2467776 99999999999999653211
Q ss_pred ------cCccchHHHHHHHHhhcch
Q 011762 133 ------TTTPTALLDVLMAADKFEV 151 (478)
Q Consensus 133 ------i~~~~~v~~lL~aA~~l~i 151 (478)
++. +.+.+|+.||++|++
T Consensus 81 D~~F~~~d~-~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQ-ETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCH-HHHHHHHHHHHhhCC
Confidence 332 467888888888764
No 51
>PF13854 Kelch_5: Kelch motif
Probab=95.36 E-value=0.017 Score=39.04 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.8
Q ss_pred ccccccceeeeecCCeeeeccceecccc
Q 011762 351 LDLKREECAHLFPAGRIYSQAFHLGGQG 378 (478)
Q Consensus 351 l~~~r~~~~~~~~~~~iY~~~~v~GG~~ 378 (478)
+|.+|..|++++.+++|| +.||..
T Consensus 1 ~P~~R~~hs~~~~~~~iy----i~GG~~ 24 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIY----IFGGYS 24 (42)
T ss_pred CCCCccceEEEEECCEEE----EEcCcc
Confidence 478899999999999999 999983
No 52
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.043 Score=48.83 Aligned_cols=98 Identities=11% Similarity=0.162 Sum_probs=67.8
Q ss_pred eEEeehhhhhcCCHHHHHhhcCCCCCCCCceEEEecCCCcHHHHHHHHHHHccCcee-----------------------
Q 011762 76 TVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLS----------------------- 132 (478)
Q Consensus 76 ~f~aHr~vLaa~S~yF~~mf~~~~~es~~~~i~l~~~~v~~~~f~~lL~fiYtg~i~----------------------- 132 (478)
.|.+-..+.. .|.-+.+++...--......|.|+ +|+..+|..|++|++.-+-.
T Consensus 16 ~f~ve~~~a~-~s~~i~~~~~~~~~~~~~~~IPl~--nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~F 92 (162)
T KOG1724|consen 16 IFEVEEEVAR-QSQTISAHMIEDGCADENDPIPLP--NVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAEF 92 (162)
T ss_pred eeehhHHHHH-HhHHHHHHHHHcCCCccCCccccC--ccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHHH
Confidence 3666665554 477888877642211111457776 89999999999999873321
Q ss_pred --cCccchHHHHHHHHhhcchhhHHHHHHHhhhcC--CCCHHhHHHHHh
Q 011762 133 --TTTPTALLDVLMAADKFEVASCMRYCSRLLRNL--PMTCESALLYLD 177 (478)
Q Consensus 133 --i~~~~~v~~lL~aA~~l~i~~L~~~C~~~L~~~--~l~~~n~l~i~~ 177 (478)
+.. .++.+|..||++|.+++|.+.|++.+..+ ..+++.....+.
T Consensus 93 lk~d~-~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~f~ 140 (162)
T KOG1724|consen 93 LKVDQ-GTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREIFN 140 (162)
T ss_pred HhcCH-HHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHHcC
Confidence 222 47889999999999999999999987662 335665555443
No 53
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=94.71 E-value=0.099 Score=52.77 Aligned_cols=90 Identities=18% Similarity=0.279 Sum_probs=65.6
Q ss_pred EEEEEee--EEeehhhhhcC--CHHHHHhhcCCCCCCCCce--EEEecCCCcHHHHHHHHHHHccCceecCccchHHHHH
Q 011762 70 TVLRVKT--VHISSPILAAK--SPFFYKLFSNGMRESEQRY--VTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVL 143 (478)
Q Consensus 70 V~l~v~~--f~aHr~vLaa~--S~yF~~mf~~~~~es~~~~--i~l~~~~v~~~~f~~lL~fiYtg~i~i~~~~~v~~lL 143 (478)
|.|.|++ |.-.+.-|+-. =.+|.+++++.+.-..... |-| +=+|+.|..+|+|+-||++.++. -....+|
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI---DRDPdlFaviLn~LRTg~L~~~g-~~~~~ll 88 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI---DRDPDLFAVILNLLRTGDLDASG-VFPERLL 88 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe---cCCchHHHHHHHHHhcCCCCCcc-Cchhhhh
Confidence 4577843 77667666543 4799999998775444333 655 67899999999999999999976 4444455
Q ss_pred H-HHhhcchhhHHH---HHHHhhh
Q 011762 144 M-AADKFEVASCMR---YCSRLLR 163 (478)
Q Consensus 144 ~-aA~~l~i~~L~~---~C~~~L~ 163 (478)
. -|.||++.+|.. +|+.-+.
T Consensus 89 hdEA~fYGl~~llrrl~~~~~~F~ 112 (465)
T KOG2714|consen 89 HDEAMFYGLTPLLRRLTLCEELFD 112 (465)
T ss_pred hhhhhhcCcHHHHHHhhcCccccc
Confidence 4 999999999887 5555433
No 54
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=94.49 E-value=0.1 Score=48.06 Aligned_cols=70 Identities=17% Similarity=0.237 Sum_probs=55.5
Q ss_pred CHHHHHhhcCCC---CCCCCceEEEecCCCcHHHHHHHHHHHccCceecCccchHHHHHHHHhhcchhhHHHHHHH
Q 011762 88 SPFFYKLFSNGM---RESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSR 160 (478)
Q Consensus 88 S~yF~~mf~~~~---~es~~~~i~l~~~~v~~~~f~~lL~fiYtg~i~i~~~~~v~~lL~aA~~l~i~~L~~~C~~ 160 (478)
-.-..+||.+.- .++.+.-+-| +-+|.-|+.||+|+-.|++.....-++.++|+.|++||+-+|++..++
T Consensus 33 DSMLa~MF~~~g~~~~~d~kGa~lI---DRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 33 DSMLAAMFSGRGAMCQEDKKGAVLI---DRSPKYFEPILNYLRDGQIPSLSDIDCLGVLEEARFFQILSLKDHLED 105 (302)
T ss_pred hHHHHHHHccCCCccccccCceEEE---ccCchhhHHHHHHHhcCceeecCCccHHHHHHHhhHHhhHhHHhHHhh
Confidence 346778998732 2333445555 788999999999999999886554689999999999999999987766
No 55
>PF13964 Kelch_6: Kelch motif
Probab=94.04 E-value=0.083 Score=36.99 Aligned_cols=29 Identities=17% Similarity=0.124 Sum_probs=22.0
Q ss_pred eeEeeecc-------cceEEEecCCCCeEEE---ccccc
Q 011762 327 ERAYKYRP-------VKVVEFELPRQQCVVY---LDLKR 355 (478)
Q Consensus 327 ~~i~~~~~-------~~~v~~y~p~~~~W~~---l~~~r 355 (478)
+.||+.|+ .+.+++|||.+++|.. ||.+|
T Consensus 12 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 12 GKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 45777543 4789999999999998 55554
No 56
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=93.66 E-value=0.067 Score=37.39 Aligned_cols=24 Identities=4% Similarity=-0.211 Sum_probs=21.1
Q ss_pred eeecC---CcceeccCCCceeeecccc
Q 011762 418 ARIKP---TEEYVSKYKGNYTFTGGKA 441 (478)
Q Consensus 418 E~Ydp---~W~~v~~m~~~~~~~~~~~ 441 (478)
-.||+ +|+.++++|.+|+.|++++
T Consensus 22 ~~~~~~~~~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 22 WVFDLDTNTWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred EEEECCCCEEEECCCCCCCccceEEEE
Confidence 78999 9999999999999887643
No 57
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=93.43 E-value=0.13 Score=52.93 Aligned_cols=64 Identities=14% Similarity=-0.040 Sum_probs=49.1
Q ss_pred ceEEEecCCCCeEEE------ccccccceeeeecCCeeeeccceeccc----c-c------------cccccee------
Q 011762 336 KVVEFELPRQQCVVY------LDLKREECAHLFPAGRIYSQAFHLGGQ----G-F------------FLSAHCN------ 386 (478)
Q Consensus 336 ~~v~~y~p~~~~W~~------l~~~r~~~~~~~~~~~iY~~~~v~GG~----~-~------------~~~~~~~------ 386 (478)
..+...|..+-.|.. -|.+|+-|++++++|++| |.||. + . ..+-.||
T Consensus 230 gDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMy----vfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~ 305 (830)
T KOG4152|consen 230 GDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMY----VFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMA 305 (830)
T ss_pred cceeEEecceeecccccccCCCCCCcccccceeecceeE----Eecceeeeeccccccccccceeeeccceeeeeecchh
Confidence 455667888888986 567899999999999999 99995 1 0 1111233
Q ss_pred -------------eccCCceeEEEEEecee
Q 011762 387 -------------MDQQSSFHCFGLFLGMQ 403 (478)
Q Consensus 387 -------------m~~~R~~~~~~~l~g~l 403 (478)
...+|.+||+++++.++
T Consensus 306 W~tl~~d~~ed~tiPR~RAGHCAvAigtRl 335 (830)
T KOG4152|consen 306 WETLLMDTLEDNTIPRARAGHCAVAIGTRL 335 (830)
T ss_pred eeeeeeccccccccccccccceeEEeccEE
Confidence 56788999999999999
No 58
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=93.12 E-value=0.46 Score=35.05 Aligned_cols=54 Identities=13% Similarity=0.130 Sum_probs=39.8
Q ss_pred EEEEE---eeEEeehhhhhcCCHHHHHhhcCCCCCCCCceEEEecCCCcHHHHHHHHHHHcc
Q 011762 70 TVLRV---KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYS 128 (478)
Q Consensus 70 V~l~v---~~f~aHr~vLaa~S~yF~~mf~~~~~es~~~~i~l~~~~v~~~~f~~lL~fiYt 128 (478)
|+|+. +.|.+.+.+.. .|..++.|+.+...+.. .|.|+ +++...|+.+++|++.
T Consensus 3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~--~Ipl~--~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLEDLGDEDE--PIPLP--NVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHHT-TSHHHHHHHHCTCCCGT--EEEET--TS-HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhhhccccc--ccccC--ccCHHHHHHHHHHHHh
Confidence 45555 35888888775 69999999986332222 67776 9999999999999963
No 59
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=93.07 E-value=0.2 Score=34.88 Aligned_cols=28 Identities=11% Similarity=-0.163 Sum_probs=24.7
Q ss_pred cceEEEecCCCCeEEE---ccccccceeeee
Q 011762 335 VKVVEFELPRQQCVVY---LDLKREECAHLF 362 (478)
Q Consensus 335 ~~~v~~y~p~~~~W~~---l~~~r~~~~~~~ 362 (478)
.+.+..||+.+++|+. +|.+|..|++++
T Consensus 18 ~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 18 LNDVWVFDLDTNTWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred ecCEEEEECCCCEEEECCCCCCCccceEEEE
Confidence 3688999999999998 788999999876
No 60
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.81 E-value=0.37 Score=47.81 Aligned_cols=38 Identities=21% Similarity=0.185 Sum_probs=30.7
Q ss_pred ceEEEecCCCCeEEEcc----ccccceeeeecCC-eeeeccceeccc
Q 011762 336 KVVEFELPRQQCVVYLD----LKREECAHLFPAG-RIYSQAFHLGGQ 377 (478)
Q Consensus 336 ~~v~~y~p~~~~W~~l~----~~r~~~~~~~~~~-~iY~~~~v~GG~ 377 (478)
+.+..|||.+|+|..|+ ....++.++.+++ .|| +.||+
T Consensus 113 nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~----f~GGv 155 (381)
T COG3055 113 NDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIY----FFGGV 155 (381)
T ss_pred eeeEEecCCCChhheeccccccccccceeEecCCceEE----EEccc
Confidence 57788999999999843 3345677888887 999 99997
No 61
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=90.06 E-value=0.96 Score=38.09 Aligned_cols=82 Identities=15% Similarity=0.275 Sum_probs=57.9
Q ss_pred EEeehhhhhcCCHHHHHhhcCCCCCCCCceEEEecCCCcHHHHHHHHHHHccCceec-----------------------
Q 011762 77 VHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLST----------------------- 133 (478)
Q Consensus 77 f~aHr~vLaa~S~yF~~mf~~~~~es~~~~i~l~~~~v~~~~f~~lL~fiYtg~i~i----------------------- 133 (478)
|.+.+. .|.+|-..+.|+... ....+.++.+++...+|..+++|+-..+-..
T Consensus 14 F~vd~~-iAerSiLikN~l~d~----~~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~wdr~Fm 88 (158)
T COG5201 14 FRVDEN-IAERSILIKNMLCDS----TACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFWDRFFM 88 (158)
T ss_pred EEehHH-HHHHHHHHHHHhccc----cccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCccHHHHHHH
Confidence 555544 356777888887652 2223344445999999999999995532211
Q ss_pred --CccchHHHHHHHHhhcchhhHHHHHHHhhhc
Q 011762 134 --TTPTALLDVLMAADKFEVASCMRYCSRLLRN 164 (478)
Q Consensus 134 --~~~~~v~~lL~aA~~l~i~~L~~~C~~~L~~ 164 (478)
+. +.+.++..+|+||.++.|.++||+.+.+
T Consensus 89 ~vDq-emL~eI~laaNYL~ikpLLd~gCKivae 120 (158)
T COG5201 89 EVDQ-EMLLEICLAANYLEIKPLLDLGCKIVAE 120 (158)
T ss_pred HhhH-HHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 11 3467889999999999999999998776
No 62
>PLN02772 guanylate kinase
Probab=89.54 E-value=0.46 Score=48.46 Aligned_cols=71 Identities=15% Similarity=0.157 Sum_probs=48.2
Q ss_pred ccccceeeeecCCeeeeccceecccccccccceeeccCCceeEEEEEeceeccCCcceeeeceeeeeecC-CcceeccC-
Q 011762 353 LKREECAHLFPAGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARIKP-TEEYVSKY- 430 (478)
Q Consensus 353 ~~r~~~~~~~~~~~iY~~~~v~GG~~~~~~~~~~m~~~R~~~~~~~l~g~l~~~~~~s~v~~~~~E~Ydp-~W~~v~~m- 430 (478)
.++..+++++.++++| |+||.... +.++..| -+||+ +|+++.|-
T Consensus 23 ~~~~~~tav~igdk~y----v~GG~~d~-------------------------~~~~~~v-----~i~D~~t~~W~~P~V 68 (398)
T PLN02772 23 KPKNRETSVTIGDKTY----VIGGNHEG-------------------------NTLSIGV-----QILDKITNNWVSPIV 68 (398)
T ss_pred CCCCcceeEEECCEEE----EEcccCCC-------------------------ccccceE-----EEEECCCCcEecccc
Confidence 4677789999999999 99996111 1123346 89999 55555543
Q ss_pred ----CCceeeeccccccccccCCCCCceeeecCCcceecceeeee
Q 011762 431 ----KGNYTFTGGKAVGYRNLFGIPWTAFMADDSIYFINGNLHLR 471 (478)
Q Consensus 431 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (478)
|.|+-.|.++.++ ++.|++|++.+..+
T Consensus 69 ~G~~P~~r~GhSa~v~~--------------~~rilv~~~~~~~~ 99 (398)
T PLN02772 69 LGTGPKPCKGYSAVVLN--------------KDRILVIKKGSAPD 99 (398)
T ss_pred cCCCCCCCCcceEEEEC--------------CceEEEEeCCCCCc
Confidence 5566666665554 67888888877665
No 63
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=88.78 E-value=0.61 Score=31.82 Aligned_cols=18 Identities=22% Similarity=0.086 Sum_probs=15.6
Q ss_pred cceEEEecCCCCeEEEcc
Q 011762 335 VKVVEFELPRQQCVVYLD 352 (478)
Q Consensus 335 ~~~v~~y~p~~~~W~~l~ 352 (478)
.+++++||+.+++|..++
T Consensus 27 ~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 27 TNSVEVYDPETNTWEELP 44 (47)
T ss_dssp EEEEEEEETTTTEEEEEE
T ss_pred eeeEEEEeCCCCEEEEcC
Confidence 479999999999999843
No 64
>PLN02772 guanylate kinase
Probab=88.13 E-value=0.78 Score=46.83 Aligned_cols=55 Identities=9% Similarity=-0.098 Sum_probs=41.9
Q ss_pred eeEeeecc-------cceEEEecCCCCeEEE------ccccccceeeeec-CCeeeeccceeccccccccccee
Q 011762 327 ERAYKYRP-------VKVVEFELPRQQCVVY------LDLKREECAHLFP-AGRIYSQAFHLGGQGFFLSAHCN 386 (478)
Q Consensus 327 ~~i~~~~~-------~~~v~~y~p~~~~W~~------l~~~r~~~~~~~~-~~~iY~~~~v~GG~~~~~~~~~~ 386 (478)
+.+|+.|+ ...+.+||+.+++|.. .|.+|.+|+++++ +++|+ |+++.+. +....|
T Consensus 35 dk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~ril----v~~~~~~-~~~~~w 103 (398)
T PLN02772 35 DKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRIL----VIKKGSA-PDDSIW 103 (398)
T ss_pred CEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEE----EEeCCCC-CccceE
Confidence 56777553 3588999999999997 5788999999988 68999 9987521 234556
No 65
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=87.50 E-value=0.7 Score=35.86 Aligned_cols=43 Identities=21% Similarity=0.446 Sum_probs=31.3
Q ss_pred chHHHHHHHHhhcchhhHHHHHHHhhhcC--CCCHHhHHHHHhcc
Q 011762 137 TALLDVLMAADKFEVASCMRYCSRLLRNL--PMTCESALLYLDLP 179 (478)
Q Consensus 137 ~~v~~lL~aA~~l~i~~L~~~C~~~L~~~--~l~~~n~l~i~~~A 179 (478)
+.+.+|+.||++|+|+.|.+.|++++..+ ..+++..-.++.+.
T Consensus 14 ~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~ 58 (78)
T PF01466_consen 14 DELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIE 58 (78)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT--
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCC
Confidence 68999999999999999999999988762 34555555555444
No 66
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=86.94 E-value=0.21 Score=49.62 Aligned_cols=84 Identities=12% Similarity=0.023 Sum_probs=57.4
Q ss_pred ccEEEEEe---eEEeehhhhhcCCHHHHHhhcCCCCCCCCceEEEecCCCcHHHHHHHHHHHccCceecCccchHHHHHH
Q 011762 68 LSTVLRVK---TVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLM 144 (478)
Q Consensus 68 ~DV~l~v~---~f~aHr~vLaa~S~yF~~mf~~~~~es~~~~i~l~~~~v~~~~f~~lL~fiYtg~i~i~~~~~v~~lL~ 144 (478)
.|+++..+ -|.|||..|+++|++|..-+..-+ ....+|+-. .+-+.+|..+++|+|-..-.+-. +.-.+|+.
T Consensus 150 ~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~--~~~heI~~~--~v~~~~f~~flk~lyl~~na~~~-~qynalls 224 (516)
T KOG0511|consen 150 HDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFY--VQGHEIEAH--RVILSAFSPFLKQLYLNTNAEWK-DQYNALLS 224 (516)
T ss_pred cchHHHhhccccccHHHHHHHhhhcccCchhhhhc--cccCchhhh--hhhHhhhhHHHHHHHHhhhhhhh-hHHHHHHh
Confidence 47777773 389999999999999865443322 122344333 67789999999999987332332 45577888
Q ss_pred HHhhcchhhHHH
Q 011762 145 AADKFEVASCMR 156 (478)
Q Consensus 145 aA~~l~i~~L~~ 156 (478)
...+|++..+..
T Consensus 225 i~~kF~~e~l~~ 236 (516)
T KOG0511|consen 225 IEVKFSKEKLSL 236 (516)
T ss_pred hhhhccHHHhHH
Confidence 888887766554
No 67
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.54 E-value=1.1 Score=44.45 Aligned_cols=80 Identities=18% Similarity=0.250 Sum_probs=51.2
Q ss_pred CCeEEE---cc-ccccceeeeecCCeeeeccceecccccccccceeeccCCceeEEEEEeceeccCCcceeeeceeeeee
Q 011762 345 QQCVVY---LD-LKREECAHLFPAGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARI 420 (478)
Q Consensus 345 ~~~W~~---l~-~~r~~~~~~~~~~~iY~~~~v~GG~~~~~~~~~~m~~~R~~~~~~~l~g~l~~~~~~s~v~~~~~E~Y 420 (478)
...|+. .| .+|.+...++++++|| +.||.|....... .-++. + -+|
T Consensus 69 ~k~W~~~a~FpG~~rnqa~~a~~~~kLy----vFgG~Gk~~~~~~--------------------~~~nd-~-----Y~y 118 (381)
T COG3055 69 GKGWTKIADFPGGARNQAVAAVIGGKLY----VFGGYGKSVSSSP--------------------QVFND-A-----YRY 118 (381)
T ss_pred CCCceEcccCCCcccccchheeeCCeEE----EeeccccCCCCCc--------------------eEeee-e-----EEe
Confidence 457988 44 4588888889999999 9999853311000 00123 3 899
Q ss_pred cC---CcceeccCCCceeeeccccccccccCCCCCceeeecCCcceecce
Q 011762 421 KP---TEEYVSKYKGNYTFTGGKAVGYRNLFGIPWTAFMADDSIYFINGN 467 (478)
Q Consensus 421 dp---~W~~v~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (478)
|| +|..+.... |+-+.|.+++.. ++..||+.||.
T Consensus 119 ~p~~nsW~kl~t~s-P~gl~G~~~~~~------------~~~~i~f~GGv 155 (381)
T COG3055 119 DPSTNSWHKLDTRS-PTGLVGASTFSL------------NGTKIYFFGGV 155 (381)
T ss_pred cCCCChhheecccc-ccccccceeEec------------CCceEEEEccc
Confidence 99 999987553 233556555532 14477777775
No 68
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=83.60 E-value=0.79 Score=45.46 Aligned_cols=130 Identities=18% Similarity=0.195 Sum_probs=99.6
Q ss_pred eEEeehhhhhcCCHHHHHhhcCCCCCCCCceEEEecCCCcHHHHHHHHHHHccCceecCc-cchHHHHHHHHhhcchhhH
Q 011762 76 TVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTT-PTALLDVLMAADKFEVASC 154 (478)
Q Consensus 76 ~f~aHr~vLaa~S~yF~~mf~~~~~es~~~~i~l~~~~v~~~~f~~lL~fiYtg~i~i~~-~~~v~~lL~aA~~l~i~~L 154 (478)
.+++|+.+|+..|+-|..+....-..+..+.+.+. +++...+..+..++|.+ ++-.+ .....-++.+...+-++..
T Consensus 37 ~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~~~~~v~~~ 113 (319)
T KOG1778|consen 37 LIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKIL--GVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLALSHVYVVPQP 113 (319)
T ss_pred hhHHHHhcccccchHHHHHHhhhcchhhhhcceee--cccccccchhhhhhccc-hhhhHHHHHHHHHHhhhhhhhccCc
Confidence 49999999999999998877654223334455665 78889999999999998 33322 1234556666678889999
Q ss_pred HHHHHHhhhcCCCCHHhHHHHHhccchhhhhhchHHHHHHHHHHHHHcHHHHhccchhh
Q 011762 155 MRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEV 213 (478)
Q Consensus 155 ~~~C~~~L~~~~l~~~n~l~i~~~A~~~~~~~~~~~L~~~~~~fI~~nf~~v~~~s~~f 213 (478)
+..|...+...-++..|++.++..+..+ ....|..++...+...|..... ++..
T Consensus 114 ~~d~~~~~~~~~~~~r~~flvl~~~~~~----~~~~lr~a~hss~~~~~~~H~~-t~~~ 167 (319)
T KOG1778|consen 114 KADCDPILECGLFDKRNVFLVLQLAEHC----DFSDLRRAKHSSIMLLFDLHLQ-TEKW 167 (319)
T ss_pred cccCCccccchhhhhHHHHHHHHHHHhc----ccchHHHHHHHHHHHHHHHHhc-ccCc
Confidence 9988888876346888999999998876 7888999999999998888877 5443
No 69
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=82.27 E-value=3.8 Score=36.27 Aligned_cols=98 Identities=13% Similarity=0.121 Sum_probs=69.7
Q ss_pred CCCCccEEEEEee--EEeehhhhhcCCHHHHHhhcCCCCCC----CCceEEEecCCCcHHHHHHHHHHHccCceecCccc
Q 011762 64 WSMDLSTVLRVKT--VHISSPILAAKSPFFYKLFSNGMRES----EQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPT 137 (478)
Q Consensus 64 ~~~~~DV~l~v~~--f~aHr~vLaa~S~yF~~mf~~~~~es----~~~~i~l~~~~v~~~~f~~lL~fiYtg~i~i~~~~ 137 (478)
+|.-.=|.+.||+ |.--|.-|.--+.-|-.-|...-.+. ...--.+- +-+|.-|..+|+|+-.|++.++. -
T Consensus 17 ~g~s~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlI--DRDP~~FgpvLNylRhgklvl~~-l 93 (210)
T KOG2715|consen 17 NGVSLWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLI--DRDPFYFGPVLNYLRHGKLVLNK-L 93 (210)
T ss_pred CCceEEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEe--ccCcchHHHHHHHHhcchhhhhh-h
Confidence 3444456677754 77788888888855655554432221 11112232 67899999999999999999876 4
Q ss_pred hHHHHHHHHhhcchhhHHHHHHHhhhc
Q 011762 138 ALLDVLMAADKFEVASCMRYCSRLLRN 164 (478)
Q Consensus 138 ~v~~lL~aA~~l~i~~L~~~C~~~L~~ 164 (478)
.-..+|+-|++|.++.|+++..+-+.+
T Consensus 94 ~eeGvL~EAefyn~~~li~likd~i~d 120 (210)
T KOG2715|consen 94 SEEGVLEEAEFYNDPSLIQLIKDRIQD 120 (210)
T ss_pred hhhccchhhhccCChHHHHHHHHHHHH
Confidence 557799999999999999988777766
No 70
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=81.39 E-value=7.3 Score=37.90 Aligned_cols=84 Identities=18% Similarity=0.286 Sum_probs=57.9
Q ss_pred cEEEEEe--eEEeehhhhhcCC-HHHHHhhcCCCC---CCCCceEEEecCCCcHHHHHHHHHHHccCceecCccchHHHH
Q 011762 69 STVLRVK--TVHISSPILAAKS-PFFYKLFSNGMR---ESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDV 142 (478)
Q Consensus 69 DV~l~v~--~f~aHr~vLaa~S-~yF~~mf~~~~~---es~~~~i~l~~~~v~~~~f~~lL~fiYtg~i~i~~~~~v~~l 142 (478)
-++..+. .|-+-+.+|.+.- .-.-.||.++.. ....++.++- ++++..+|+.||+|--+|.+.....-.|.+|
T Consensus 97 ~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVA-dGi~s~vFRAILdYYksG~iRCP~~vSvpEL 175 (438)
T KOG3840|consen 97 KVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVA-DGMTSSCFRAILDYYQSGTMRCPSSVSVSEL 175 (438)
T ss_pred ceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehh-cchhHHHHHHHHHHHhcCceeCCCCCchHHH
Confidence 4555553 4777777776532 234566766542 1223445553 4899999999999999999998764578888
Q ss_pred HHHHhhcchhh
Q 011762 143 LMAADKFEVAS 153 (478)
Q Consensus 143 L~aA~~l~i~~ 153 (478)
-+|.|||.|+.
T Consensus 176 rEACDYLlipF 186 (438)
T KOG3840|consen 176 REACDYLLVPF 186 (438)
T ss_pred HhhcceEEeec
Confidence 88888887763
No 71
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=79.37 E-value=3.6 Score=41.56 Aligned_cols=113 Identities=15% Similarity=0.183 Sum_probs=66.5
Q ss_pred chHHHHHHHHhhcchhhHHHHHHHhhhcCCCCHHhHHHHHhccchhhhhhchHHHHHHHHHHHHHcHHHHhccchhhhcC
Q 011762 137 TALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNL 216 (478)
Q Consensus 137 ~~v~~lL~aA~~l~i~~L~~~C~~~L~~~~l~~~n~l~i~~~A~~~~~~~~~~~L~~~~~~fI~~nf~~v~~~s~~fl~L 216 (478)
+||..++.+|..|++++|...|..|+.+ + +-+++.-- +...|-+.+ +.+++. .+.|--.
T Consensus 148 ~NvCmifdaA~ly~l~~Lt~~C~mfmDr-n-----A~~lL~~~-------sFn~LSk~s-------L~e~l~-RDsFfAp 206 (620)
T KOG4350|consen 148 ENVCMIFDAAYLYQLTDLTDYCMMFMDR-N-----ADQLLEDP-------SFNRLSKDS-------LKELLA-RDSFFAP 206 (620)
T ss_pred cceeeeeeHHHHhcchHHHHHHHHHHhc-C-----HHhhhcCc-------chhhhhHHH-------HHHHHh-hhcccch
Confidence 7899999999999999999999999987 2 22222111 222233222 233344 4555555
Q ss_pred CHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHhcccCcC-CCCCHHHHHhh
Q 011762 217 PLAGIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRLIRF-PYMTCRKLKKV 281 (478)
Q Consensus 217 ~~~~l~~lL~~d~L~v~sE~~vf~av~~Wl~~~~~~~~~r~~~~~~~Ll~~VRf-~~ls~~~L~~~ 281 (478)
..+.+..+.+=..-+ -.+-+..++..++-. .-.+ .+||..||- ++++|+.+.+-
T Consensus 207 E~~IFlAv~~W~~~N---ske~~k~~~~~VRLP-------Lm~l-teLLnvVRPsGllspD~iLDA 261 (620)
T KOG4350|consen 207 ELKIFLAVRSWHQNN---SKEASKVLLELVRLP-------LMTL-TELLNVVRPSGLLSPDTILDA 261 (620)
T ss_pred HHHHHHHHHHHHhcC---chhhHHHHHHHHhhh-------hccH-HHHHhccCcccCcCHHHHHHH
Confidence 555554444422222 133345555555543 2233 578888887 56788877763
No 72
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=76.92 E-value=1.6 Score=43.04 Aligned_cols=55 Identities=11% Similarity=0.064 Sum_probs=46.6
Q ss_pred CCCHHhHHHHHhccchhhhhhchHHHHHHHHHHHHHcHHHHhccchhhhcCCHHHHHHh
Q 011762 166 PMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAV 224 (478)
Q Consensus 166 ~l~~~n~l~i~~~A~~~~~~~~~~~L~~~~~~fI~~nf~~v~~~s~~fl~L~~~~l~~l 224 (478)
.++++|++.++--++-. .++.|.+.|+.|+.+|+.+++...-++..|+.+.+..|
T Consensus 71 ~l~~~NvvsIliSS~FL----~M~~Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RL 125 (317)
T PF11822_consen 71 SLTPSNVVSILISSEFL----QMESLVEECLQYCHDHMSEIVASPCNLNCLNDNLLTRL 125 (317)
T ss_pred cCCcCcEEEeEehhhhh----ccHHHHHHHHHHHHHhHHHHHcCCCCcccCCHHHHHHH
Confidence 68999999999776543 78999999999999999999983346777998888877
No 73
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=75.49 E-value=11 Score=30.07 Aligned_cols=83 Identities=11% Similarity=0.176 Sum_probs=50.0
Q ss_pred HHHHHHHhhcchhhHHHHHHHhhhcC-----------CCCHHhHHHHHhccchhhhhhchHHHHHHHHHHHHHcHH----
Q 011762 140 LDVLMAADKFEVASCMRYCSRLLRNL-----------PMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYK---- 204 (478)
Q Consensus 140 ~~lL~aA~~l~i~~L~~~C~~~L~~~-----------~l~~~n~l~i~~~A~~~~~~~~~~~L~~~~~~fI~~nf~---- 204 (478)
.+++..|..++++.|.+.|.+|+... .++.+....++.--... ...-.++.+++.+|+..+..
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~--v~~E~~v~~av~~W~~~~~~~r~~ 79 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLN--VSSEDDVFEAVLRWLKHNPENREE 79 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS----ECTCCCHHHHHHHHHHCTHHHHTT
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccc--cccHHHHHHHHHHHHHhCHHHHHH
Confidence 46889999999999999999999872 23344444444422210 01234677888888866643
Q ss_pred ---HHhccchhhhcCCHHHHHHhh
Q 011762 205 ---DISKFQEEVLNLPLAGIEAVL 225 (478)
Q Consensus 205 ---~v~~~s~~fl~L~~~~l~~lL 225 (478)
.+.. .=.|..|+.+.+.+.+
T Consensus 80 ~~~~Ll~-~iR~~~l~~~~L~~~v 102 (103)
T PF07707_consen 80 HLKELLS-CIRFPLLSPEELQNVV 102 (103)
T ss_dssp THHHHHC-CCHHHCT-HHHHHHCC
T ss_pred HHHHHHH-hCCcccCCHHHHHHHH
Confidence 3333 4456667766665543
No 74
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=60.01 E-value=14 Score=35.40 Aligned_cols=62 Identities=18% Similarity=0.125 Sum_probs=42.1
Q ss_pred EEEecCCCCeEEEccccc--cceeeee-cCCeeeeccceeccc--cc------cccc----cee------eccCCceeEE
Q 011762 338 VEFELPRQQCVVYLDLKR--EECAHLF-PAGRIYSQAFHLGGQ--GF------FLSA----HCN------MDQQSSFHCF 396 (478)
Q Consensus 338 v~~y~p~~~~W~~l~~~r--~~~~~~~-~~~~iY~~~~v~GG~--~~------~~~~----~~~------m~~~R~~~~~ 396 (478)
--.|||.+++++.|...- .+.|.++ -||.+. ++||. |. .+.. .-| |..+|-+-++
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll----~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~ 123 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLL----QTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTA 123 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEE----EeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccc
Confidence 445999999999965432 2233333 489998 99996 21 1111 224 9999999988
Q ss_pred EEE-ecee
Q 011762 397 GLF-LGMQ 403 (478)
Q Consensus 397 ~~l-~g~l 403 (478)
..| ||.+
T Consensus 124 ~~L~DG~v 131 (243)
T PF07250_consen 124 TTLPDGRV 131 (243)
T ss_pred eECCCCCE
Confidence 888 7777
No 75
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=58.59 E-value=33 Score=32.24 Aligned_cols=91 Identities=10% Similarity=0.132 Sum_probs=60.7
Q ss_pred ccE-EEEE-eeEEeehhh--hhcCCHHHHHhhcCCCC--CCCCceEEEecCCCcHHHHHHHHHHHccCceecCc-cchHH
Q 011762 68 LST-VLRV-KTVHISSPI--LAAKSPFFYKLFSNGMR--ESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTT-PTALL 140 (478)
Q Consensus 68 ~DV-~l~v-~~f~aHr~v--Laa~S~yF~~mf~~~~~--es~~~~i~l~~~~v~~~~f~~lL~fiYtg~i~i~~-~~~v~ 140 (478)
.|+ .+.| |.++.|+.- .+-.-....+||++... ...+....| +=+-..|+-||+|+-|..+.+++ ..++.
T Consensus 8 ~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI---DRDG~lFRyvL~~LRt~~l~lpe~f~e~~ 84 (221)
T KOG2723|consen 8 PDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI---DRDGFLFRYVLDYLRTKALLLPEDFAEVE 84 (221)
T ss_pred CCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE---cCCcchHHHHHHHhcccccccchhhhhHH
Confidence 344 3555 456666533 34445566778876322 122345566 46678999999999997777654 24688
Q ss_pred HHHHHHhhcchhhHHHHHHHh
Q 011762 141 DVLMAADKFEVASCMRYCSRL 161 (478)
Q Consensus 141 ~lL~aA~~l~i~~L~~~C~~~ 161 (478)
.|..-|++|+++.+...+.+-
T Consensus 85 ~L~rEA~f~~l~~~~~~l~~~ 105 (221)
T KOG2723|consen 85 RLVREAEFFQLEAPVTYLLNS 105 (221)
T ss_pred HHHHHHHHHccccHHHHHhcc
Confidence 999999999999887754443
No 76
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=42.12 E-value=1.3e+02 Score=23.38 Aligned_cols=24 Identities=8% Similarity=0.174 Sum_probs=21.0
Q ss_pred HHHHHHhhcchhhHHHHHHHhhhc
Q 011762 141 DVLMAADKFEVASCMRYCSRLLRN 164 (478)
Q Consensus 141 ~lL~aA~~l~i~~L~~~C~~~L~~ 164 (478)
+++.+|+.++.+.|.+.|.+|+.+
T Consensus 3 ~i~~~a~~~~~~~L~~~~~~~i~~ 26 (101)
T smart00875 3 GIRRFAELYGLEELLEKALRFILK 26 (101)
T ss_pred hHHHHHHHhChHHHHHHHHHHHHH
Confidence 577889999999999999999776
No 77
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=41.46 E-value=27 Score=33.41 Aligned_cols=40 Identities=18% Similarity=0.081 Sum_probs=32.6
Q ss_pred ccceEEEecCCC----CeEEE----ccccccceeeeec-CCeeeeccceeccc
Q 011762 334 PVKVVEFELPRQ----QCVVY----LDLKREECAHLFP-AGRIYSQAFHLGGQ 377 (478)
Q Consensus 334 ~~~~v~~y~p~~----~~W~~----l~~~r~~~~~~~~-~~~iY~~~~v~GG~ 377 (478)
+.+.+..|+|.. ..|.. |..+|.+.++..+ ||++. |+||.
T Consensus 89 G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vl----IvGG~ 137 (243)
T PF07250_consen 89 GNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVL----IVGGS 137 (243)
T ss_pred cccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEE----EEeCc
Confidence 347888898875 57976 7888999888876 79999 99997
No 78
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=36.88 E-value=21 Score=37.33 Aligned_cols=47 Identities=15% Similarity=0.031 Sum_probs=35.0
Q ss_pred eeEeeecc---c---ceEEEecCCCCeEEE------ccccccceeeeecC--Ceeeeccceeccc
Q 011762 327 ERAYKYRP---V---KVVEFELPRQQCVVY------LDLKREECAHLFPA--GRIYSQAFHLGGQ 377 (478)
Q Consensus 327 ~~i~~~~~---~---~~v~~y~p~~~~W~~------l~~~r~~~~~~~~~--~~iY~~~~v~GG~ 377 (478)
+++|..|+ . .....|+..++.|.. .|..|..|-++.-- .++| ..|-+
T Consensus 273 ~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLY----LlG~Y 333 (723)
T KOG2437|consen 273 ECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLY----LLGRY 333 (723)
T ss_pred cEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHh----hhhhc
Confidence 35666554 2 344568999999997 67789999887654 4999 99987
No 79
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=31.87 E-value=1.3e+02 Score=31.49 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=35.9
Q ss_pred CCCHHhHHHHHhccchhhhhhchHHHHHHHHHHHHHcHHHHhccchhhhcCCH
Q 011762 166 PMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPL 218 (478)
Q Consensus 166 ~l~~~n~l~i~~~A~~~~~~~~~~~L~~~~~~fI~~nf~~v~~~s~~fl~L~~ 218 (478)
.+.++||+.++..|..| ....|++.|.+||..+... ..+|+.|+.
T Consensus 184 ~~~~dtvi~tl~~AkKY----~VpaLer~CVkflr~~l~~----~naf~~L~q 228 (521)
T KOG2075|consen 184 KLAADTVITTLYAAKKY----LVPALERQCVKFLRKNLMA----DNAFLELFQ 228 (521)
T ss_pred hhhHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHhcCC----hHHHHHHHH
Confidence 57899999999999876 8899999999999987543 344555554
No 80
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=25.27 E-value=79 Score=33.34 Aligned_cols=38 Identities=13% Similarity=-0.004 Sum_probs=30.4
Q ss_pred ceEEEecCCCCeEEEccc---------cccceeeeecCCe--eeeccceeccc
Q 011762 336 KVVEFELPRQQCVVYLDL---------KREECAHLFPAGR--IYSQAFHLGGQ 377 (478)
Q Consensus 336 ~~v~~y~p~~~~W~~l~~---------~r~~~~~~~~~~~--iY~~~~v~GG~ 377 (478)
..+..||..++.|.-|.. ....|+++|.+.+ || |.||.
T Consensus 346 sDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iy----VfGGr 394 (723)
T KOG2437|consen 346 SDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIY----VFGGR 394 (723)
T ss_pred cceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEE----EecCe
Confidence 567889999999998432 2346899999877 99 99996
No 81
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=24.80 E-value=68 Score=25.66 Aligned_cols=32 Identities=19% Similarity=0.349 Sum_probs=28.0
Q ss_pred CC-HHhHHHHHhccchhhhhhchHHHHHHHHHHHHHc
Q 011762 167 MT-CESALLYLDLPSSVLMADAVQPLTDTAKQFLAAR 202 (478)
Q Consensus 167 l~-~~n~l~i~~~A~~~~~~~~~~~L~~~~~~fI~~n 202 (478)
++ .+++..++.+|..+ +++.|.+.|.+++.++
T Consensus 78 ~~~~~~~~~ll~lA~~~----~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 78 INSDENVEELLELADKL----QIPELKKACEKFLQES 110 (111)
T ss_dssp EE-TTTHHHHHHHHHHT----TBHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh----CcHHHHHHHHHHHHhC
Confidence 44 78999999999865 9999999999999876
No 82
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=23.77 E-value=2.4e+02 Score=27.67 Aligned_cols=37 Identities=22% Similarity=0.157 Sum_probs=25.1
Q ss_pred eEEEecCCCCeEEE--cc---ccccceeeeecCCeeeeccceeccc
Q 011762 337 VVEFELPRQQCVVY--LD---LKREECAHLFPAGRIYSQAFHLGGQ 377 (478)
Q Consensus 337 ~v~~y~p~~~~W~~--l~---~~r~~~~~~~~~~~iY~~~~v~GG~ 377 (478)
.|...|..-+|... +| ...+.|-+.+-++.+| ++||.
T Consensus 132 ~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VY----ilGGH 173 (337)
T PF03089_consen 132 QVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVY----ILGGH 173 (337)
T ss_pred eEEEEeccccccccccchhhcCCeEEEEEEecCceEE----EEccE
Confidence 44445666666654 33 3455677778899999 99997
No 83
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=23.47 E-value=1.6e+02 Score=28.94 Aligned_cols=74 Identities=14% Similarity=0.190 Sum_probs=38.9
Q ss_pred eccCCceeEEEEEe--cee-----c-cCCcceeeeceeeeeecCCcceeccCCCceeee----ccccccccccC----CC
Q 011762 387 MDQQSSFHCFGLFL--GMQ-----E-KGSVSFAVDYEFAARIKPTEEYVSKYKGNYTFT----GGKAVGYRNLF----GI 450 (478)
Q Consensus 387 m~~~R~~~~~~~l~--g~l-----~-~~~~~s~v~~~~~E~Ydp~W~~v~~m~~~~~~~----~~~~~~~~~~~----~~ 450 (478)
.+.+|++|.+-++. |+- | ...+-.. ||---.|..|-.=+...+.- |+.+. ..+- ++
T Consensus 84 vP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~------qRTTenWNsVvDC~P~VfLiDleFGC~ta--h~lpEl~dG~ 155 (337)
T PF03089_consen 84 VPEARYGHTINVVHSRGKTACVLFGGRSYMPPG------QRTTENWNSVVDCPPQVFLIDLEFGCCTA--HTLPELQDGQ 155 (337)
T ss_pred CCcccccceEEEEEECCcEEEEEECCcccCCcc------ccchhhcceeccCCCeEEEEecccccccc--ccchhhcCCe
Confidence 77888888766553 332 1 1111111 33333888776544444332 33322 1111 22
Q ss_pred C-CceeeecCCcceeccee
Q 011762 451 P-WTAFMADDSIYFINGNL 468 (478)
Q Consensus 451 ~-~~~~~~~~~~~~~~~~~ 468 (478)
. +-++..+|.+|++||-+
T Consensus 156 SFHvslar~D~VYilGGHs 174 (337)
T PF03089_consen 156 SFHVSLARNDCVYILGGHS 174 (337)
T ss_pred EEEEEEecCceEEEEccEE
Confidence 2 44556689999999964
No 84
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=21.18 E-value=1.9e+02 Score=30.47 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=40.2
Q ss_pred CceEEEecCCCcHHHHHHHHHHHccCceecCccchHHHHHHHHhhcchhhH--HHHHHHhhhc
Q 011762 104 QRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASC--MRYCSRLLRN 164 (478)
Q Consensus 104 ~~~i~l~~~~v~~~~f~~lL~fiYtg~i~i~~~~~v~~lL~aA~~l~i~~L--~~~C~~~L~~ 164 (478)
.++.-+ +=+|.+|..|++|-+||++.....-......+--+|++|++. -.-|+....+
T Consensus 80 ~~EyfF---DR~P~~F~~Vl~fYrtGkLH~p~~vC~~~F~eEL~yWgI~~~~le~CC~~~~~~ 139 (477)
T KOG3713|consen 80 TNEYFF---DRHPGAFAYVLNFYRTGKLHVPADVCPLSFEEELDYWGIDEAHLESCCWMRYRQ 139 (477)
T ss_pred cCeeee---ccChHHHHHHHHHHhcCeeccccccchHHHHHHHHHhCCChhhhhHHhHHHHhh
Confidence 456666 578999999999999999998752234455566678888653 3444444444
Done!