BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011764
(478 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 191 bits (486), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 104/262 (39%), Positives = 147/262 (56%), Gaps = 11/262 (4%)
Query: 34 AEDLVVSLPGQPKVAFRQYAGYVDVDVKNGRSLFYYFVEAEVEPHEKPLTLWLNXXXXXX 93
A D + LPGQP V F Y+GY+ VD GRSLFY EA + PL LWLN
Sbjct: 7 AADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCS 66
Query: 94 XXXXXAFTELGPFYPRGDGRGLRRNSMSWNKASNLLFVESPAGVGWSYSNTTSD-YNCGD 152
A ELG F + G GL N WNK +N+LF++SPAGVG+SY+NT+SD Y GD
Sbjct: 67 SVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGD 126
Query: 153 ASTARDMHVFMMNWYEKFPEFKSRELFLTGESYAGHYIPQLADVLLDHNAHSKGFKFNIK 212
TA D + F+ W+E+FP +K R+ ++ GESYAGHY+P+L+ ++ SK N+K
Sbjct: 127 NRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLV----HRSKNPVINLK 182
Query: 213 GVAIGNPLLRLDQDVPAIYEFFWSHGMISDEIGLTIMSDCDFDDYVSGTSHNMTNSCIEA 272
G +GN L+ D +EF+W+HG++SD+ + C D ++ + + +C A
Sbjct: 183 GFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFI-----HPSPACDAA 237
Query: 273 ITEANKIVGDYINNYDVILDVC 294
A G+ I+ Y + VC
Sbjct: 238 TDVATAEQGN-IDMYSLYTPVC 258
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 191 bits (485), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 104/262 (39%), Positives = 147/262 (56%), Gaps = 11/262 (4%)
Query: 34 AEDLVVSLPGQPKVAFRQYAGYVDVDVKNGRSLFYYFVEAEVEPHEKPLTLWLNXXXXXX 93
A D + LPGQP V F Y+GY+ VD GRSLFY EA + PL LWLN
Sbjct: 7 AADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCS 66
Query: 94 XXXXXAFTELGPFYPRGDGRGLRRNSMSWNKASNLLFVESPAGVGWSYSNTTSD-YNCGD 152
A ELG F + G GL N WNK +N+LF++SPAGVG+SY+NT+SD Y GD
Sbjct: 67 SVAYGASEELGAFRVKPAGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGD 126
Query: 153 ASTARDMHVFMMNWYEKFPEFKSRELFLTGESYAGHYIPQLADVLLDHNAHSKGFKFNIK 212
TA D + F+ W+E+FP +K R+ ++ GESYAGHY+P+L+ ++ SK N+K
Sbjct: 127 NRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLV----HRSKNPVINLK 182
Query: 213 GVAIGNPLLRLDQDVPAIYEFFWSHGMISDEIGLTIMSDCDFDDYVSGTSHNMTNSCIEA 272
G +GN L+ D +EF+W+HG++SD+ + C D ++ + + +C A
Sbjct: 183 GFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFI-----HPSPACDAA 237
Query: 273 ITEANKIVGDYINNYDVILDVC 294
A G+ I+ Y + VC
Sbjct: 238 TDVATAEQGN-IDMYSLYTPVC 258
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 191 bits (485), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 104/262 (39%), Positives = 147/262 (56%), Gaps = 11/262 (4%)
Query: 34 AEDLVVSLPGQPKVAFRQYAGYVDVDVKNGRSLFYYFVEAEVEPHEKPLTLWLNXXXXXX 93
A D + LPGQP V F Y+GY+ VD GRSLFY EA + PL LWLN
Sbjct: 2 AADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCS 61
Query: 94 XXXXXAFTELGPFYPRGDGRGLRRNSMSWNKASNLLFVESPAGVGWSYSNTTSD-YNCGD 152
A ELG F + G GL N WNK +N+LF++SPAGVG+SY+NT+SD Y GD
Sbjct: 62 SVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGD 121
Query: 153 ASTARDMHVFMMNWYEKFPEFKSRELFLTGESYAGHYIPQLADVLLDHNAHSKGFKFNIK 212
TA D + F+ W+E+FP +K R+ ++ GESYAGHY+P+L+ ++ SK N+K
Sbjct: 122 NRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLV----HRSKNPVINLK 177
Query: 213 GVAIGNPLLRLDQDVPAIYEFFWSHGMISDEIGLTIMSDCDFDDYVSGTSHNMTNSCIEA 272
G +GN L+ D +EF+W+HG++SD+ + C D ++ + + +C A
Sbjct: 178 GFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFI-----HPSPACDAA 232
Query: 273 ITEANKIVGDYINNYDVILDVC 294
A G+ I+ Y + VC
Sbjct: 233 TDVATAEQGN-IDMYSLYTPVC 253
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 191 bits (485), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 104/262 (39%), Positives = 147/262 (56%), Gaps = 11/262 (4%)
Query: 34 AEDLVVSLPGQPKVAFRQYAGYVDVDVKNGRSLFYYFVEAEVEPHEKPLTLWLNXXXXXX 93
A D + LPGQP V F Y+GY+ VD GRSLFY EA + PL LWLN
Sbjct: 3 AADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCS 62
Query: 94 XXXXXAFTELGPFYPRGDGRGLRRNSMSWNKASNLLFVESPAGVGWSYSNTTSD-YNCGD 152
A ELG F + G GL N WNK +N+LF++SPAGVG+SY+NT+SD Y GD
Sbjct: 63 SVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGD 122
Query: 153 ASTARDMHVFMMNWYEKFPEFKSRELFLTGESYAGHYIPQLADVLLDHNAHSKGFKFNIK 212
TA D + F+ W+E+FP +K R+ ++ GESYAGHY+P+L+ ++ SK N+K
Sbjct: 123 NRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLV----HRSKNPVINLK 178
Query: 213 GVAIGNPLLRLDQDVPAIYEFFWSHGMISDEIGLTIMSDCDFDDYVSGTSHNMTNSCIEA 272
G +GN L+ D +EF+W+HG++SD+ + C D ++ + + +C A
Sbjct: 179 GFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFI-----HPSPACDAA 233
Query: 273 ITEANKIVGDYINNYDVILDVC 294
A G+ I+ Y + VC
Sbjct: 234 TDVATAEQGN-IDMYSLYTPVC 254
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 139/473 (29%), Positives = 228/473 (48%), Gaps = 63/473 (13%)
Query: 33 PAEDLVVSLPGQPKV-AFRQYAGYVDVDVKNGRSLFYYFVEAEVEPHEKPLTLWLNXXXX 91
P +D + LPG K +FRQY+GY+ + L Y+FVE++ +P P+ LWLN
Sbjct: 2 PDQDEIQRLPGLAKQPSFRQYSGYLKS--SGSKHLHYWFVESQKDPENSPVVLWLNGGPG 59
Query: 92 XXXXXXXAFTELGPFYPRGDGRGLRRNSMSWNKASNLLFVESPAGVGWSYSNTTSDYNCG 151
TE GPF + DG L N SWN +N+L++ESPAGVG+SYS+ Y
Sbjct: 60 CSSLDGL-LTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDKF-YATN 117
Query: 152 DASTARDMHVFMMNWYEKFPEFKSRELFLTGESYAGHYIPQLADVLLDHNAHSKGFKFNI 211
D A+ + +++ FPE+K+ +LFLTGESYAG YIP LA +++ + N+
Sbjct: 118 DTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPS------MNL 171
Query: 212 KGVAIGNPLLRLDQDVPAIYEFFWSHGMISDEIGLTIMSDCDFDDYVSGTSHNMTN---- 267
+G+A+GN L +Q+ ++ F + HG++ + + ++ + C S N N
Sbjct: 172 QGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHC--------CSQNKCNFYDN 223
Query: 268 ---SCIEAITEANKIVGDY-INNYDVILDVC----------YPTIVEQEL---------- 303
C+ + E +IVG+ +N Y++ T+V Q+L
Sbjct: 224 KDLECVTNLQEVARIVGNSGLNIYNLYAPCAGGVPSHFRYEKDTVVVQDLGNIFTRLPLK 283
Query: 304 -----RLRKMATKMSVGVDVCMTLERFFYLNLPEVQKALHANRTNLPYGWSMCSGVLN-- 356
L + K+ + T YLN P V+KAL+ LP W MC+ ++N
Sbjct: 284 RMWHQALLRSGDKVRMDPPCTNTTAASTYLNNPYVRKALNIPE-QLP-QWDMCNFLVNLQ 341
Query: 357 YSDTDSNINILPVLKRIIQNGIPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVT---V 413
Y ++N LK + + +++GD D +G + L + + + V
Sbjct: 342 YRRLYRSMNS-QYLKLLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLV 400
Query: 414 PYGAWFHKQQVGGWGTEYGNLLTFVTVRGAAHMVPYAQPSRALHLFSSFVHGR 466
YG +Q+ G+ E+ + + F+T++GA HMVP +P A +FS F++ +
Sbjct: 401 KYGD--SGEQIAGFVKEFSH-IAFLTIKGAGHMVPTDKPLAAFTMFSRFLNKQ 450
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 171 bits (434), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 103/263 (39%), Positives = 148/263 (56%), Gaps = 14/263 (5%)
Query: 35 EDLVVSLPGQPK-VAFRQYAGYVDVDVKNGRSLFYYFVEAEVEPHEKP-LTLWLNXXXXX 92
+D ++ LPGQP VAF Y GYV +D NGR+L+Y+F EA+ L LWLN
Sbjct: 7 DDRILGLPGQPNGVAFGMYGGYVTIDDNNGRALYYWFQEADTADPAAAPLVLWLNGGPGC 66
Query: 93 XXXXXXAFTELGPFYPRGDGRGLRRNSMSWNKASNLLFVESPAGVGWSYSNTTSDYNCGD 152
A ELG F +G L N +WNKA+N+LF ESPAGVG+SYSNT+SD + GD
Sbjct: 67 SSIGLGAMQELGAFRVHTNGESLLLNEYAWNKAANILFAESPAGVGFSYSNTSSDLSMGD 126
Query: 153 ASTARDMHVFMMNWYEKFPEFKSRELFLTGESYAGHYIPQLADVLLDHNAHSKGFKFNIK 212
A+D + F++ W+E+FP + RE ++ GES GH+IPQL+ V+ + +S N +
Sbjct: 127 DKMAQDTYTFLVKWFERFPHYNYREFYIAGES--GHFIPQLSQVVYRNRNNSP--FINFQ 182
Query: 213 GVAIGNPLLRLDQDVPAIYEFFWSHGMISDEIGLTIMSDCDFDDYVSGTSH-NMTNSCIE 271
G+ + + L +D+ ++E +W HG+ISDE + + C GTS + T C E
Sbjct: 183 GLLVSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVC------PGTSFMHPTPECTE 236
Query: 272 AITEANKIVGDYINNYDVILDVC 294
+A G+ IN Y + C
Sbjct: 237 VWNKALAEQGN-INPYTIYTPTC 258
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 142 bits (357), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 138/258 (53%), Gaps = 26/258 (10%)
Query: 33 PAEDLVVSLPGQPKV-AFRQYAGYVDVDVKNGRSLFYYFVEAEVEPHEKPLTLWLNXXXX 91
P +D + LPG K +FRQY+GY+ + L Y+FVE++ +P P+ LWLN
Sbjct: 4 PDQDEIQRLPGLAKQPSFRQYSGYLKG--SGSKHLHYWFVESQKDPENSPVVLWLNGGPG 61
Query: 92 XXXXXXXAFTELGPFYPRGDGRGLRRNSMSWNKASNLLFVESPAGVGWSYSNTTSDYNCG 151
TE GPF + DG L N SWN +N+L++ESPAGVG+SYS+ Y
Sbjct: 62 CSSLDGL-LTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDKF-YATN 119
Query: 152 DASTARDMHVFMMNWYEKFPEFKSRELFLTGESYAGHYIPQLADVLLDHNAHSKGFKFNI 211
D A+ + +++ FPE+K+ +LFLTGESYAG YIP LA +++ + N+
Sbjct: 120 DTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPS------MNL 173
Query: 212 KGVAIGNPLLRLDQDVPAIYEFFWSHGMISDEIGLTIMSDCDFDDYVSGTSHNMTN---- 267
+G+A+GN L +Q+ ++ F + HG++ + + ++ + C S N N
Sbjct: 174 QGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHC--------CSQNKCNFYDN 225
Query: 268 ---SCIEAITEANKIVGD 282
C+ + E +IVG+
Sbjct: 226 KDLECVTNLQEVARIVGN 243
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 93/157 (59%), Gaps = 9/157 (5%)
Query: 317 DVCMTLERFFYLNLPEVQKALHANRTNL-PYGWSMCSGVLNYSDTDSNINILPVLKRIIQ 375
D C YLNLPEVQ ALHAN + + Y W++CS + + ++LPV + +IQ
Sbjct: 5 DPCAVFNSINYLNLPEVQTALHANVSGIVEYPWTVCSNTIFDQWGQAADDLLPVYRELIQ 64
Query: 376 NGIPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFH---KQQVGGWGTEYG 432
G+ VWV+SGD DSVVP+ +R R LA L V + W+ +++VGGW +Y
Sbjct: 65 AGLRVWVYSGDTDSVVPVSSTR---RSLAA-LELPVKTSWYPWYMAPTEREVGGWSVQYE 120
Query: 433 NLLTFVTVRGAAHMVPYAQPSRALHLFSSFVHGRRLP 469
LT+VTVRGA H+VP +P++A LF F+ G +P
Sbjct: 121 G-LTYVTVRGAGHLVPVHRPAQAFLLFKQFLKGEPMP 156
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 114 bits (286), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 114/446 (25%), Positives = 192/446 (43%), Gaps = 75/446 (16%)
Query: 51 QYAGYVDVDVKNGRSLFYYFVEAEVEPHEKPLTLWLNXXXXXXXXXXXAFTELGPFYPRG 110
QY GY+DV+ ++ + F++ E+ +P + P+ LWLN F ELGP
Sbjct: 16 QYTGYLDVEDED-KHFFFWTFESRNDPAKDPVILWLNGGPGCSSLTGL-FFELGPSSIGP 73
Query: 111 DGRGLRRNSMSWNKASNLLFVESPAGVGWSYSNTTSDYNCGDASTARDMHVFMMNWYEKF 170
D + + N SWN + ++F++ P VG+SYS ++ N + +D++ F+ ++++F
Sbjct: 74 DLKPIG-NPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNT--VAAGKDVYNFLELFFDQF 130
Query: 171 PEF--KSRELFLTGESYAGHYIPQLADVLLDHNAHSKGFKFNIKGVAIGN----PLLRLD 224
PE+ K ++ + GESYAGHYIP A +L H K FN+ V IGN PL + +
Sbjct: 131 PEYVNKGQDFHIAGESYAGHYIPVFASEILSH----KDRNFNLTSVLIGNGLTDPLTQYN 186
Query: 225 QDVP-AIYEFFWSHGMISDEIG---------LTIMSDCDFDDYVSGTSHNMTNSCIEAIT 274
P A E + S+E L ++ C +D + T C A
Sbjct: 187 YYEPMACGEGGEPSVLPSEECSAMEDSLERCLGLIESC-YDSQSVWSCVPATIYCNNAQL 245
Query: 275 EANKIVGDYINNYDVILD-----VCYPTIVEQELRLRKMATKMSVGVDVCMTLERFFYLN 329
+ G N YD+ D +CYPT+ + + L + K +VG +V + + N
Sbjct: 246 APYQRTGR--NVYDIRKDCEGGNLCYPTLQDIDDYLNQDYVKEAVGAEV----DHYESCN 299
Query: 330 LPEVQKALHANRTNLPYGWSMCSGVLNYSDTDSNINILPVLKRIIQNGIPVWVFSGDQDS 389
+ L A PY + ++ +P+ V++GD+D
Sbjct: 300 FDINRNFLFAGDWMKPYH--------------------TAVTDLLNQDLPILVYAGDKDF 339
Query: 390 VVPLLGSRTLIRELARDLNFEVTVPYGAWFHKQQVGGWGTEYGNLL----------TFVT 439
+ LG++ L + E F Q+V W + + T++
Sbjct: 340 ICNWLGNKAWTDVLPWKYDEE--------FASQKVRNWTASITDEVAGEVKSYKHFTYLR 391
Query: 440 VRGAAHMVPYAQPSRALHLFSSFVHG 465
V HMVP+ P AL + + ++HG
Sbjct: 392 VFNGGHMVPFDVPENALSMVNEWIHG 417
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 114 bits (286), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 88/160 (55%), Gaps = 6/160 (3%)
Query: 317 DVCMTLERFFYLNLPEVQKALHANRTN-LPYGWSMCSGVLNYSDTDSNINILPVLKRIIQ 375
D C Y N +VQ ALHAN T + Y W+ CS +N D+ ++LP+ + +I
Sbjct: 5 DPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 64
Query: 376 NGIPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFHKQQVGGWGTEYGNLL 435
G+ +WVFSGD D+VVPL +R I L T + W+ Q+VGGW Y L
Sbjct: 65 AGLRIWVFSGDTDAVVPLTATRYSIGALG----LPTTTSWYPWYDDQEVGGWSQVYKG-L 119
Query: 436 TFVTVRGAAHMVPYAQPSRALHLFSSFVHGRRLPNNTRPA 475
T V+VRGA H VP +P +AL LF F+ G+ +P T+ A
Sbjct: 120 TLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMPGQTKNA 159
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 111 bits (278), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 85/156 (54%), Gaps = 6/156 (3%)
Query: 317 DVCMTLERFFYLNLPEVQKALHANRTN-LPYGWSMCSGVLNYSDTDSNINILPVLKRIIQ 375
D C Y N +VQ ALHAN T + Y W+ CS +N D+ ++LP+ + +I
Sbjct: 3 DPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 62
Query: 376 NGIPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFHKQQVGGWGTEYGNLL 435
G+ +WVFSGD D+VVPL +R I L T + W+ Q+VGGW Y L
Sbjct: 63 AGLRIWVFSGDTDAVVPLTATRYSIGALG----LPTTTSWYPWYDDQEVGGWSQVYKG-L 117
Query: 436 TFVTVRGAAHMVPYAQPSRALHLFSSFVHGRRLPNN 471
T V+VRGA H VP +P +AL LF F+ G+ +P
Sbjct: 118 TLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMPGQ 153
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 85/154 (55%), Gaps = 6/154 (3%)
Query: 317 DVCMTLERFFYLNLPEVQKALHANRTN-LPYGWSMCSGVLNYSDTDSNINILPVLKRIIQ 375
D C Y N +VQ ALHAN T + Y W+ CS +N D+ ++LP+ + +I
Sbjct: 3 DPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 62
Query: 376 NGIPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFHKQQVGGWGTEYGNLL 435
G+ +WVFSGD D+VVPL +R I L T + W+ Q+VGGW Y L
Sbjct: 63 AGLRIWVFSGDTDAVVPLTATRYSIGALG----LPTTTSWYPWYDDQEVGGWSQVYKG-L 117
Query: 436 TFVTVRGAAHMVPYAQPSRALHLFSSFVHGRRLP 469
T V+VRGA H VP +P +AL LF F+ G+ +P
Sbjct: 118 TLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 85/154 (55%), Gaps = 6/154 (3%)
Query: 317 DVCMTLERFFYLNLPEVQKALHANRTN-LPYGWSMCSGVLNYSDTDSNINILPVLKRIIQ 375
D C Y N +VQ ALHAN T + Y W+ CS +N D+ ++LP+ + +I
Sbjct: 3 DPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 62
Query: 376 NGIPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFHKQQVGGWGTEYGNLL 435
G+ +WVFSGD D+VVPL +R I L T + W+ Q+VGGW Y L
Sbjct: 63 AGLRIWVFSGDTDAVVPLTATRYSIGALG----LPTTTSWYPWYDDQEVGGWSQVYKG-L 117
Query: 436 TFVTVRGAAHMVPYAQPSRALHLFSSFVHGRRLP 469
T V+VRGA H VP +P +AL LF F+ G+ +P
Sbjct: 118 TLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 112/446 (25%), Positives = 190/446 (42%), Gaps = 75/446 (16%)
Query: 51 QYAGYVDVDVKNGRSLFYYFVEAEVEPHEKPLTLWLNXXXXXXXXXXXAFTELGPFYPRG 110
QY GY+DV+ ++ + F++ E+ +P + P+ LWLN F LGP
Sbjct: 16 QYTGYLDVEDED-KHFFFWTFESRNDPAKDPVILWLNGGPGCSSLTGLFFA-LGPSSIGP 73
Query: 111 DGRGLRRNSMSWNKASNLLFVESPAGVGWSYSNTTSDYNCGDASTARDMHVFMMNWYEKF 170
D + + N SWN + ++F++ P VG+SYS ++ N + +D++ F+ ++++F
Sbjct: 74 DLKPIG-NPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNT--VAAGKDVYNFLELFFDQF 130
Query: 171 PEF--KSRELFLTGESYAGHYIPQLADVLLDHNAHSKGFKFNIKGVAIGN----PLLRLD 224
PE+ K ++ + G SYAGHYIP A +L H K FN+ V IGN PL + +
Sbjct: 131 PEYVNKGQDFHIAGASYAGHYIPVFASEILSH----KDRNFNLTSVLIGNGLTDPLTQYN 186
Query: 225 QDVP-AIYEFFWSHGMISDEIG---------LTIMSDCDFDDYVSGTSHNMTNSCIEAIT 274
P A E + S+E L ++ C +D + T C A
Sbjct: 187 YYEPMACGEGGEPSVLPSEECSAMEDSLERCLGLIESC-YDSQSVWSCVPATIYCNNAQL 245
Query: 275 EANKIVGDYINNYDVILD-----VCYPTIVEQELRLRKMATKMSVGVDVCMTLERFFYLN 329
+ G N YD+ D +CYPT+ + + L + K +VG +V + + N
Sbjct: 246 APYQRTGR--NVYDIRKDCEGGNLCYPTLQDIDDYLNQDYVKEAVGAEV----DHYESCN 299
Query: 330 LPEVQKALHANRTNLPYGWSMCSGVLNYSDTDSNINILPVLKRIIQNGIPVWVFSGDQDS 389
+ L A PY + ++ +P+ V++GD+D
Sbjct: 300 FDINRNFLFAGDWMKPYH--------------------TAVTDLLNQDLPILVYAGDKDF 339
Query: 390 VVPLLGSRTLIRELARDLNFEVTVPYGAWFHKQQVGGWGTEYGNLL----------TFVT 439
+ LG++ L + E F Q+V W + + T++
Sbjct: 340 ICNWLGNKAWTDVLPWKYDEE--------FASQKVRNWTASITDEVAGEVKSYKHFTYLR 391
Query: 440 VRGAAHMVPYAQPSRALHLFSSFVHG 465
V HMVP+ P AL + + ++HG
Sbjct: 392 VFNGGHMVPFDVPENALSMVNEWIHG 417
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 105 bits (261), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 116/463 (25%), Positives = 197/463 (42%), Gaps = 74/463 (15%)
Query: 41 LPG-----QPKVAFRQYAGYV-----DVDVKNGRSLFYYFVEAEVEPH----EKPLTLWL 86
LPG P + +AG++ D D ++ L Y+F + ++PL +WL
Sbjct: 14 LPGLSEVPDPSNIPQMHAGHIPLRSEDADEQDSSDLEYFFWKFTNNDSNGNVDRPLIIWL 73
Query: 87 NXXXXXXXXXXXAFTELGPFYPRGDGRGLRRNSMSWNKASNLLFVESPAGVGWSYSNTTS 146
N A E GPF DG+ L N SW +LLF++ P G G+S
Sbjct: 74 NGGPGCSSMDG-ALVESGPFRVNSDGK-LYLNEGSWISKGDLLFIDQPTGTGFSVEQNKD 131
Query: 147 DYNCGDASTARDMHV-------FMMNWYEKFPEFKSRELFLTGESYAGHYIPQLADVLLD 199
+ D+ F+ N+++ FPE +R++ L+GESYAG YIP A+ +L+
Sbjct: 132 EGKIDKNKFDEDLEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILN 191
Query: 200 HNAHSK--GFKFNIKGVAIGNPLLRLDQDVPAIYEFFWSHGMISD------------EIG 245
HN SK G +++K + IGN + + + F +I + E
Sbjct: 192 HNKFSKIDGDTYDLKALLIGNGWIDPNTQSLSYLPFAMEKKLIDESNPNFKHLTNAHENC 251
Query: 246 LTIMSDCDFDD---YVSGTSHNMTNSCIEAITEAN-KIVGDYINNYDVILDVCYPTIVEQ 301
+++ D+ + N+ N + E++ K D +N Y+ L YP
Sbjct: 252 QNLINSASTDEAAHFSYQECENILNLLLSYTRESSQKGTADCLNMYNFNLKDSYP----- 306
Query: 302 ELRLRKMATKMSVGVDVCMTLERFFYLNLPEVQKALHANRTNLPYGWSMCSGV----LNY 357
+ M+ D+ + +FF + P V +LH + + + W C+ L+
Sbjct: 307 -------SCGMNWPKDISF-VSKFF--STPGVIDSLHLDSDKIDH-WKECTNSVGTKLSN 355
Query: 358 SDTDSNINILPVLKRIIQNGIPVWVFSGDQDSVVPLLGSRTLIREL--ARDLNFEVTVPY 415
+ +I++LP L +++GI + +F+GD+D + G I L F
Sbjct: 356 PISKPSIHLLPGL---LESGIEIVLFNGDKDLICNNKGVLDTIDNLKWGGIKGFSDDAVS 412
Query: 416 GAWFHK-------QQVGGWGTEYGNLLTFVTVRGAAHMVPYAQ 451
W HK ++ G+ +Y LTFV+V A+HMVP+ +
Sbjct: 413 FDWIHKSKSTDDSEEFSGY-VKYDRNLTFVSVYNASHMVPFDK 454
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 15/147 (10%)
Query: 327 YLNLPEVQKALHANRTNLPYGWSMCSGVLN--YSDTDSNINILPVLKRIIQNGIPVWVFS 384
YLN P V+KAL+ LP W MC+ ++N Y ++N LK + + +++
Sbjct: 14 YLNNPYVRKALNIPE-QLP-QWDMCNFLVNLQYRRLYRSMNS-QYLKLLSSQKYQILLYN 70
Query: 385 GDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFHK-----QQVGGWGTEYGNLLTFVT 439
GD D +G + L N ++ V W K +Q+ G+ E+ ++ F+T
Sbjct: 71 GDVDMACNFMGDEWFVDSL----NQKMEVQRRPWLVKYGDSGEQIAGFVKEFSHI-AFLT 125
Query: 440 VRGAAHMVPYAQPSRALHLFSSFVHGR 466
++GA HMVP +P A +FS F++ +
Sbjct: 126 IKGAGHMVPTDKPLAAFTMFSRFLNKQ 152
>pdb|3DOH|A Chain A, Crystal Structure Of A Thermostable Esterase
pdb|3DOH|B Chain B, Crystal Structure Of A Thermostable Esterase
pdb|3DOI|A Chain A, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
pdb|3DOI|B Chain B, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
Length = 380
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 378 IPVWVFSGDQDSVVPLLGSRTLIRELAR 405
IP+WVF + D VVP+ SR L+++LA
Sbjct: 309 IPIWVFHAEDDPVVPVENSRVLVKKLAE 336
>pdb|3BWN|A Chain A, L-Tryptophan Aminotransferase
pdb|3BWN|B Chain B, L-Tryptophan Aminotransferase
pdb|3BWN|D Chain D, L-Tryptophan Aminotransferase
pdb|3BWN|E Chain E, L-Tryptophan Aminotransferase
pdb|3BWN|F Chain F, L-Tryptophan Aminotransferase
Length = 391
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 14/82 (17%)
Query: 208 KFNIKGVAIGNPLLRLDQDVPAIYEFFWSHGMISDEIGLTIMSDCDFDDYVSGTSHNMTN 267
K + K + + + ++ LD P YE +W + D +TI CD Y S +MTN
Sbjct: 12 KISNKNIPMSDFVVNLDHGDPTAYEEYWRK--MGDRCTVTIRG-CDLMSYFS----DMTN 64
Query: 268 SC-------IEAITEANKIVGD 282
C +AI + + +VG+
Sbjct: 65 LCWFLEPELEDAIKDLHGVVGN 86
>pdb|3BWN|C Chain C, L-Tryptophan Aminotransferase
pdb|3BWO|A Chain A, L-Tryptophan Aminotransferase
pdb|3BWO|B Chain B, L-Tryptophan Aminotransferase
pdb|3BWO|C Chain C, L-Tryptophan Aminotransferase
pdb|3BWO|D Chain D, L-Tryptophan Aminotransferase
pdb|3BWO|E Chain E, L-Tryptophan Aminotransferase
pdb|3BWO|F Chain F, L-Tryptophan Aminotransferase
Length = 391
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 14/82 (17%)
Query: 208 KFNIKGVAIGNPLLRLDQDVPAIYEFFWSHGMISDEIGLTIMSDCDFDDYVSGTSHNMTN 267
K + K + + + ++ LD P YE +W + D +TI CD Y S +MTN
Sbjct: 12 KISNKNIPMSDFVVNLDHGDPTAYEEYWRK--MGDRCTVTIRG-CDLMSYFS----DMTN 64
Query: 268 SC-------IEAITEANKIVGD 282
C +AI + + +VG+
Sbjct: 65 LCWFLEPELEDAIKDLHGVVGN 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,516,740
Number of Sequences: 62578
Number of extensions: 622273
Number of successful extensions: 1356
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1291
Number of HSP's gapped (non-prelim): 22
length of query: 478
length of database: 14,973,337
effective HSP length: 103
effective length of query: 375
effective length of database: 8,527,803
effective search space: 3197926125
effective search space used: 3197926125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)