BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011765
(478 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 169 bits (428), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 149/468 (31%), Positives = 218/468 (46%), Gaps = 51/468 (10%)
Query: 1 MADNSKLQIAMFPWLAFGHMIPWLELAK-LIAQKGHKIFFI----STPRNIDR--LPRLP 53
M ++ +A+ P GH+IP +E AK L+ G + F+ P R L LP
Sbjct: 1 MEESKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLP 60
Query: 54 QNLASMIQFVKISLPHVD----NLRENAEATIDLPYDEVK-YLKQSFDCLEEPMAKLLQS 108
+++S+ LP VD + E+ I L L++ FD E +L +
Sbjct: 61 SSISSVF------LPPVDLTDLSSSTRIESRISLTVTRSNPELRKVFDSFVE-GGRLPTA 113
Query: 109 LAPDWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFGPSSVLINDSGDHLKTPEDY 168
L D LF A+ + A E +P F TA L +F L + +
Sbjct: 114 LVVD--LFGTDAFDV---AVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEP 168
Query: 169 TRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQS--LKGCDIVAVRSCMEF 226
+P V A K F D + ++ + + K + + V + E
Sbjct: 169 LMLPGCVPV----------AGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFEL 218
Query: 227 EPEWLKLLEQ--LHRKPVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAF 284
EP +K L++ L + PV PVG L G +A+ +WLD Q GSV+YV+F
Sbjct: 219 EPNAIKALQEPGLDKPPVYPVGPL---VNIGKQEAKQTEESECLKWLDNQPLGSVLYVSF 275
Query: 285 GSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQAD---------TEPIE-LPDGFEER 334
GS + E+L E+ALGL S+ F WV++ G A+ T+P+ LP GF ER
Sbjct: 276 GSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLER 335
Query: 335 TRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAKL 394
T+ RG V WAPQ +LAH S GGFLTH GW+S +E++ G+PLI YA+Q +NA L
Sbjct: 336 TKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVL 395
Query: 395 LEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMK 442
L E L PR DG R VA ++ ++ E+G+ R+K KE+K
Sbjct: 396 LSEDIRAALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELK 443
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 145/278 (52%), Gaps = 33/278 (11%)
Query: 173 NWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWL- 231
N++ + + +R + VF L S S + H R GQ L V + S E +
Sbjct: 174 NFIPGMSKVRFRDLQEGIVFGNLNSLFSRMLH--RMGQVLPKATAVFINSFEELDDSLTN 231
Query: 232 ----KLLEQLHRKP---VIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAF 284
KL L+ P + P +P TTG +WL E++ SVVY++F
Sbjct: 232 DLKSKLKTYLNIGPFNLITPPPVVPNTTG-------------CLQWLKERKPTSVVYISF 278
Query: 285 GSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTS 344
G+ P E+ ++ LE S++PF W L+ D + LP+GF E+TRG G+V
Sbjct: 279 GTVTTPPPAEVVALSEALEASRVPFIWSLR------DKARVHLPEGFLEKTRGYGMV-VP 331
Query: 345 WAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELI 404
WAPQ +LAH++VG F+TH GW+S+ E++ G+PLI + DQ LN +++E+ ++E+
Sbjct: 332 WAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVED--VLEIG 389
Query: 405 PRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMK 442
R EG G FT++ + +L +EKG+ R+ + ++
Sbjct: 390 VRIEG-GVFTKSGLMSCFDQILSQEKGKKLRENLRALR 426
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 131 bits (330), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 103/175 (58%), Gaps = 12/175 (6%)
Query: 269 EWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIE-L 327
EWLD+ E SVVY++FGS P ELT +A LE PF W + +P E L
Sbjct: 265 EWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRG-------DPKEKL 317
Query: 328 PDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYAD 387
P GF ERT+ +G + +WAPQ+ IL H SVG FLTH+GW+SV+E + G+P+I + D
Sbjct: 318 PKGFLERTKTKGKI-VAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGD 376
Query: 388 QGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMK 442
QGLN L E ++E I +G T+ S+ ++L L + EKG I R K ++K
Sbjct: 377 QGLNTILTE--SVLE-IGVGVDNGVLTKESIKKALELTMSSEKGGIMRQKIVKLK 428
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 115/466 (24%), Positives = 204/466 (43%), Gaps = 45/466 (9%)
Query: 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRL--PRLPQNLASMIQ 61
N K + M P+ GH+ P +LAKL+ +G I F++T N RL R P+
Sbjct: 6 NRKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTD 65
Query: 62 FVKISLPH-VDNLRENAEATIDLPYDEVKYLKQSFDCLEEPMAKLLQSLAPD-------W 113
F S+P + + + + + D+P + ++++F +P +LL L
Sbjct: 66 FNFESIPDGLTPMEGDGDVSQDVP-TLCQSVRKNF---LKPYCELLTRLNHSTNVPPVTC 121
Query: 114 LLFDFAAYWLPARARELGIPSGFFSIFTAATL------GYFGPSSVLINDSGDHLKTPED 167
L+ D + A E +P+ + +A +L F ++ +L
Sbjct: 122 LVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCL 181
Query: 168 YTRVPNWVSFPTTISYRLFEARKVFDILISDESN---VSHGYRFGQSLKGCDIVAVRSCM 224
T+V +W+ P ++RL + + D + + N + + + + +
Sbjct: 182 ETKV-DWI--PGLKNFRL---KDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFN 235
Query: 225 EFEPEWLKLLEQLHRKPVIPVGQLPTTTGDGDSDAETDT-----WRSIKE---WLDEQEK 276
E E + + L + P+G LP+ + D+ W+ E WL+ +E
Sbjct: 236 ELESDVINALSST-IPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEP 294
Query: 277 GSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTR 336
GSVVYV FGS + E+L E A GL K F W+++ L + + F
Sbjct: 295 GSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGS--VIFSSEFTNEIA 352
Query: 337 GRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLE 396
RG++ SW PQ +L H S+GGFLTH GW+S E++ G+P++ +ADQ + + +
Sbjct: 353 DRGLI-ASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFIC 411
Query: 397 EKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMK 442
+ + + E D R +A+ + V+ +KG+ + KA E+K
Sbjct: 412 NEWEIGM----EIDTNVKREELAKLINEVIAGDKGKKMKQKAMELK 453
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 119/461 (25%), Positives = 202/461 (43%), Gaps = 45/461 (9%)
Query: 1 MAD-NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLP----RLPQN 55
M+D N ++ P GH+ LE AKL+ ++ +P +
Sbjct: 3 MSDINKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSV 62
Query: 56 LASMIQFVKISLPHVD----NLRENAEATIDLPYDEVKYLKQSFDCLEEPMAKLLQSLAP 111
LAS Q I LP V+ L ++ E I + +L+ ++ + +L +
Sbjct: 63 LASQPQIQLIDLPEVEPPPQELLKSPEFYI------LTFLESLIPHVKATIKTILSNKVV 116
Query: 112 DWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFGPSSVLINDSGDHLKTPEDYTRV 171
L+ DF + E GIPS +F + +G+ L N + + +D R
Sbjct: 117 G-LVLDFFCVSMIDVGNEFGIPS---YLFLTSNVGFLSLMLSLKNRQIEEVF--DDSDRD 170
Query: 172 PNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWL 231
++ P IS ++ + + D + + Y+ + + + V + + E +
Sbjct: 171 HQLLNIPG-ISNQV-PSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSI 228
Query: 232 KLLEQLHRK--PVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEA- 288
L K P+ VG L G + + I +WLDEQ SVV++ FGS
Sbjct: 229 DALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGV 288
Query: 289 --KPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEE--RTRGRGVVYTS 344
PSQ + EIALGL+ S + F W E P+GF E G+G++
Sbjct: 289 SFGPSQ--IREIALGLKHSGVRFLW-------SNSAEKKVFPEGFLEWMELEGKGMI-CG 338
Query: 345 WAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVEL- 403
WAPQ+ +LAH ++GGF++H GW+S++E++ FG+P++ YA+Q LNA L ++ V L
Sbjct: 339 WAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLG 398
Query: 404 --IPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMK 442
+ +G + + L+ ++ +K I K +EMK
Sbjct: 399 LRVDYRKGSDVVAAEEIEKGLKDLM--DKDSIVHKKVQEMK 437
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 119/461 (25%), Positives = 202/461 (43%), Gaps = 45/461 (9%)
Query: 1 MAD-NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLP----RLPQN 55
M+D N ++ P GH+ LE AKL+ ++ +P +
Sbjct: 3 MSDINKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSV 62
Query: 56 LASMIQFVKISLPHVD----NLRENAEATIDLPYDEVKYLKQSFDCLEEPMAKLLQSLAP 111
LAS Q I LP V+ L ++ E I + +L+ ++ + +L +
Sbjct: 63 LASQPQIQLIDLPEVEPPPQELLKSPEFYI------LTFLESLIPHVKATIKTILSNKVV 116
Query: 112 DWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFGPSSVLINDSGDHLKTPEDYTRV 171
L+ DF + E GIPS +F + +G+ L N + + +D R
Sbjct: 117 G-LVLDFFCVSMIDVGNEFGIPS---YLFLTSNVGFLSLMLSLKNRQIEEVF--DDSDRD 170
Query: 172 PNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWL 231
++ P IS ++ + + D + + Y+ + + + V + + E +
Sbjct: 171 HQLLNIPG-ISNQV-PSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSI 228
Query: 232 KLLEQLHRK--PVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEA- 288
L K P+ VG L G + + I +WLDEQ SVV++ FGS
Sbjct: 229 DALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGV 288
Query: 289 --KPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEE--RTRGRGVVYTS 344
PSQ + EIALGL+ S + F W E P+GF E G+G++
Sbjct: 289 SFGPSQ--IREIALGLKHSGVRFLW-------SNSAEKKVFPEGFLEWMELEGKGMI-CG 338
Query: 345 WAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVEL- 403
WAPQ+ +LAH ++GGF++H GW+S++E++ FG+P++ YA+Q LNA L ++ V L
Sbjct: 339 WAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLG 398
Query: 404 --IPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMK 442
+ +G + + L+ ++ +K I K +EMK
Sbjct: 399 LRVDYRKGSDVVAAEEIEKGLKDLM--DKDSIVHKKVQEMK 437
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 112/468 (23%), Positives = 173/468 (36%), Gaps = 99/468 (21%)
Query: 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRL----PRLPQNLASM 59
+ IAMF A GH+ P LE+ + + +GH++ + P D++ PR +
Sbjct: 5 TTPAHIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAATGPR------PV 58
Query: 60 IQFVKISLPHVD------NLRENAEATIDLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDW 113
+ + P D L +N E ++ D ++ L Q D + + PD
Sbjct: 59 LYHSTLPGPDADPEAWGSTLLDNVEPFLN---DAIQALPQLADAYADDI--------PDL 107
Query: 114 LLFDFAAYWLPAR--ARELGIPSGFFSIFTAATLGYFGPSSVLINDSGDHLKTPEDYTRV 171
+L D +Y PAR AR G+P+ S A GY E+
Sbjct: 108 VLHDITSY--PARVLARRWGVPAVSLSPNLVAWKGY------------------EEEVAE 147
Query: 172 PNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWL 231
P W T R + AR F+ + + H F ++ ++ +P
Sbjct: 148 PMWREPRQTERGRAYYAR--FEAWLKENGITEHPDTFASHPPRSLVLIPKA---LQPHAD 202
Query: 232 KLLEQLHRKPVIPVGQLPTTTGDGDSD-AETDTWRSIKEWLDEQEKGS--VVYVAFGSE- 287
++ E ++ T G D AE W ++ G+ VV V+ GS
Sbjct: 203 RVDEDVY-----------TFVGACQGDRAEEGGW--------QRPAGAEKVVLVSLGSAF 243
Query: 288 -AKPSQEELTEIALGLELSKLPFFWVLKKRLGQADT--EPIELPDGFEERTRGRGVVYTS 344
+P+ A G LP W L ++G+ T E ELPD E
Sbjct: 244 TKQPAFYRECVRAFG----NLP-GWHLVLQIGRKVTPAELGELPDNVE---------VHD 289
Query: 345 WAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELI 404
W PQLAIL + F+THAG E L P+I + DQ NA +L+ + +
Sbjct: 290 WVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKL 347
Query: 405 PRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHD 452
+E R + +L LV E + R EM G + D
Sbjct: 348 ATEEATADLLRET---ALALVDDPEVARRLRRIQAEMAQEGGTRRAAD 392
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 345 WAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELI 404
W PQL IL S F+THAG S +EAL +P++ + A+Q +NA+ + E + I
Sbjct: 312 WVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHI 369
Query: 405 PRDE 408
PRD+
Sbjct: 370 PRDQ 373
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 54/134 (40%), Gaps = 18/134 (13%)
Query: 257 SDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLP--FFWVLK 314
S+A + ++++ + VV + GS EE + + L+++P W
Sbjct: 1 SNAAKPLPKEXEDFVQSSGENGVVVFSLGSXVSNXTEERANV-IASALAQIPQKVLWRF- 58
Query: 315 KRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQ 374
DG + T G W PQ +L H F+TH G + + EA+
Sbjct: 59 --------------DGNKPDTLGLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIY 104
Query: 375 FGMPLIVLTCYADQ 388
G+P + + +ADQ
Sbjct: 105 HGIPXVGIPLFADQ 118
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 63/151 (41%), Gaps = 15/151 (9%)
Query: 262 DTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQAD 321
D R + EW + VV V+ G+ + A + + V+ GQ D
Sbjct: 232 DDRRFLGEWTRPADDLPVVLVSLGTTFNDRPGFFRDCARAFDGQP---WHVVXTLGGQVD 288
Query: 322 TEPI-ELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLI 380
+ +LP E W P + +L +V +TH G ++ EAL +G PL+
Sbjct: 289 PAALGDLPPNVEAH---------RWVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLV 337
Query: 381 VLTCYADQGLNAKLLEEKQIVELIPRDEGDG 411
V+ D A+ +++ + ++P ++ DG
Sbjct: 338 VVPQSFDVQPXARRVDQLGLGAVLPGEKADG 368
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 63/151 (41%), Gaps = 15/151 (9%)
Query: 262 DTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQAD 321
D R + EW + VV V+ G+ + A + + V+ GQ D
Sbjct: 232 DDRRFLGEWTRPADDLPVVLVSLGTTFNDRPGFFRDCARAFDGQP---WHVVXTLGGQVD 288
Query: 322 TEPI-ELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLI 380
+ +LP E W P + +L +V +TH G ++ EAL +G PL+
Sbjct: 289 PAALGDLPPNVEAH---------RWVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLV 337
Query: 381 VLTCYADQGLNAKLLEEKQIVELIPRDEGDG 411
V+ D A+ +++ + ++P ++ DG
Sbjct: 338 VVPQSFDVQPXARRVDQLGLGAVLPGEKADG 368
>pdb|3F0D|A Chain A, High Resolution Crystal Structure Of
2c-Methyl-D-Erythritol 2,4- Cyclodiphosphatase Synthase
From Burkholderia Pseudomallei
pdb|3F0D|B Chain B, High Resolution Crystal Structure Of
2c-Methyl-D-Erythritol 2,4- Cyclodiphosphatase Synthase
From Burkholderia Pseudomallei
pdb|3F0D|C Chain C, High Resolution Crystal Structure Of
2c-Methyl-D-Erythritol 2,4- Cyclodiphosphatase Synthase
From Burkholderia Pseudomallei
pdb|3F0D|D Chain D, High Resolution Crystal Structure Of
2c-Methyl-D-Erythritol 2,4- Cyclodiphosphatase Synthase
From Burkholderia Pseudomallei
pdb|3F0D|E Chain E, High Resolution Crystal Structure Of
2c-Methyl-D-Erythritol 2,4- Cyclodiphosphatase Synthase
From Burkholderia Pseudomallei
pdb|3F0D|F Chain F, High Resolution Crystal Structure Of
2c-Methyl-D-Erythritol 2,4- Cyclodiphosphatase Synthase
From Burkholderia Pseudomallei
pdb|3F0E|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei
pdb|3F0E|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei
pdb|3F0E|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei
pdb|3F0F|A Chain A, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Hydrolyzed Cdp
pdb|3F0F|B Chain B, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Hydrolyzed Cdp
pdb|3F0F|C Chain C, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Hydrolyzed Cdp
pdb|3F0G|A Chain A, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase With Cmp
pdb|3F0G|B Chain B, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase With Cmp
pdb|3F0G|C Chain C, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase With Cmp
pdb|3F0G|D Chain D, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase With Cmp
pdb|3F0G|E Chain E, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase With Cmp
pdb|3F0G|F Chain F, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase With Cmp
pdb|3IEQ|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytidine
pdb|3IEQ|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytidine
pdb|3IEQ|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytidine
pdb|3IEW|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Bound Ctp And Cdp
pdb|3IEW|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Bound Ctp And Cdp
pdb|3IEW|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Bound Ctp And Cdp
pdb|3JVH|A Chain A, Crystal Structure Of
2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate Synthase
From Burkholderia Pseudomallei With Fol Fragment 8395
pdb|3JVH|B Chain B, Crystal Structure Of
2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate Synthase
From Burkholderia Pseudomallei With Fol Fragment 8395
pdb|3JVH|C Chain C, Crystal Structure Of
2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate Synthase
From Burkholderia Pseudomallei With Fol Fragment 8395
pdb|3K14|A Chain A, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Fol Fragment 535, Ethyl
3-Methyl-5,6-Dihydroimidazo[2,1-B][1,
3]thiazole-2-Carboxylate
pdb|3K14|B Chain B, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Fol Fragment 535, Ethyl
3-Methyl-5,6-Dihydroimidazo[2,1-B][1,
3]thiazole-2-Carboxylate
pdb|3K14|C Chain C, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Fol Fragment 535, Ethyl
3-Methyl-5,6-Dihydroimidazo[2,1-B][1,
3]thiazole-2-Carboxylate
pdb|3K2X|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei In Complex With 5'-Iodo- Cytosine
pdb|3K2X|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei In Complex With 5'-Iodo- Cytosine
pdb|3K2X|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei In Complex With 5'-Iodo- Cytosine
pdb|3KE1|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei In Complex With A Fragment- Nucleoside
Fusion D000161829
pdb|3KE1|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei In Complex With A Fragment- Nucleoside
Fusion D000161829
pdb|3KE1|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei In Complex With A Fragment- Nucleoside
Fusion D000161829
pdb|3MBM|A Chain A, Crystal Structure Of 2c-methyl-d-erythritol
2,4-cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytosine And Fol Fragment 717,
Imidazo[2,1-b][1,3]thiazol-6-ylmethanol
pdb|3MBM|B Chain B, Crystal Structure Of 2c-methyl-d-erythritol
2,4-cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytosine And Fol Fragment 717,
Imidazo[2,1-b][1,3]thiazol-6-ylmethanol
pdb|3MBM|C Chain C, Crystal Structure Of 2c-methyl-d-erythritol
2,4-cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytosine And Fol Fragment 717,
Imidazo[2,1-b][1,3]thiazol-6-ylmethanol
pdb|3P0Z|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytidine And Fol955, 4-
(1h-Imidazol)-1-Yl)phenol
pdb|3P0Z|B Chain B, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytidine And Fol955, 4-
(1h-Imidazol)-1-Yl)phenol
pdb|3P0Z|C Chain C, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytidine And Fol955, 4-
(1h-Imidazol)-1-Yl)phenol
pdb|3P10|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytidine And Fol694, 2-
(Thiophen-2-Yl)phenyl Methanol
pdb|3P10|B Chain B, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytidine And Fol694, 2-
(Thiophen-2-Yl)phenyl Methanol
pdb|3P10|C Chain C, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytidine And Fol694, 2-
(Thiophen-2-Yl)phenyl Methanol
pdb|3Q8H|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei In Complex With Cytidine Derivative
Ebsi01028
pdb|3Q8H|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei In Complex With Cytidine Derivative
Ebsi01028
pdb|3Q8H|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei In Complex With Cytidine Derivative
Ebsi01028
pdb|3QHD|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei Bound To Cytidine, Fol795 And Fol955
pdb|3QHD|B Chain B, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei Bound To Cytidine, Fol795 And Fol955
pdb|3QHD|C Chain C, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei Bound To Cytidine, Fol795 And Fol955
Length = 183
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 15/65 (23%)
Query: 25 ELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLP 84
E A +AQ G I RN+D +++I PH+D +R N A +DLP
Sbjct: 102 ECASRVAQAGFAI------RNVD---------STIIAQAPKLAPHIDAMRANIAADLDLP 146
Query: 85 YDEVK 89
D V
Sbjct: 147 LDRVN 151
>pdb|3IKE|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytosine
pdb|3IKE|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytosine
pdb|3IKE|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytosine
pdb|3IKF|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Fol Fragment 717,
Imidazo[2,,1-B][1,3]thiazol-6-Ylmethanol
pdb|3IKF|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Fol Fragment 717,
Imidazo[2,,1-B][1,3]thiazol-6-Ylmethanol
pdb|3IKF|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Fol Fragment 717,
Imidazo[2,,1-B][1,3]thiazol-6-Ylmethanol
Length = 166
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 15/65 (23%)
Query: 25 ELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLP 84
E A +AQ G I RN+D +++I PH+D +R N A +DLP
Sbjct: 85 ECASRVAQAGFAI------RNVD---------STIIAQAPKLAPHIDAMRANIAADLDLP 129
Query: 85 YDEVK 89
D V
Sbjct: 130 LDRVN 134
>pdb|2J9A|A Chain A, Bllap In Complex With Microginin Fr1
Length = 487
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 260 ETDTWRSIKEWLDEQEKGSVVYVAFGSEAKP 290
+TD + K W++EQE GS + VA GSE P
Sbjct: 197 KTDVFIRPKSWIEEQEMGSFLSVAKGSEEPP 227
>pdb|2EWB|A Chain A, The Crystal Structure Of Bovine Lens Leucine
Aminopeptidase In Complex With Zofenoprilat
Length = 486
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 260 ETDTWRSIKEWLDEQEKGSVVYVAFGSEAKP 290
+TD + K W++EQE GS + VA GSE P
Sbjct: 197 KTDVFIRPKSWIEEQEMGSFLSVAKGSEEPP 227
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 18 GHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLA-SMIQFVKISLPHVDNLREN 76
GH+ P L L +A++GH+I +++TP D + + +F +P V +E+
Sbjct: 16 GHVYPSLGLVSELARRGHRITYVTTPLFADEVKAAGAEVVLYKSEFDTFHVPEVVK-QED 74
Query: 77 AEATIDLPY--DEVKYLKQSFDCL 98
AE + L Y + V L+ + + L
Sbjct: 75 AETQLHLVYVRENVAILRAAEEAL 98
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 345 WAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQG 389
W P ++LAH LTH +V+EA G+PL+++ +A +
Sbjct: 288 WIPFHSVLAHAR--ACLTHGTTGAVLEAFAAGVPLVLVPHFATEA 330
>pdb|1LCP|A Chain A, Bovine Lens Leucine Aminopeptidase Complexed With
L-Leucine Phosphonic Acid
pdb|1LCP|B Chain B, Bovine Lens Leucine Aminopeptidase Complexed With
L-Leucine Phosphonic Acid
pdb|1LAN|A Chain A, Leucine Aminopeptidase Complex With L-Leucinal
pdb|1LAM|A Chain A, Leucine Aminopeptidase (Unligated)
Length = 484
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 260 ETDTWRSIKEWLDEQEKGSVVYVAFGSEAKP 290
+TD + K W++EQE GS + VA GSE P
Sbjct: 197 KTDVFIRPKSWIEEQEMGSFLSVAKGSEEPP 227
>pdb|1BPM|A Chain A, Differentiation And Identification Of The Two Catalytic
Metal Binding Sites In Bovine Lens Leucine
Aminopeptidase By X-Ray Crystallography
pdb|1BPN|A Chain A, Differentiation And Identification Of The Two Catalytic
Metal Binding Sites In Bovine Lens Leucine
Aminopeptidase By X-Ray Crystallography
pdb|1LAP|A Chain A, Molecular Structure Of Leucine Aminopeptidase At
2.7-Angstroms Resolution
Length = 487
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 260 ETDTWRSIKEWLDEQEKGSVVYVAFGSEAKP 290
+TD + K W++EQE GS + VA GSE P
Sbjct: 197 KTDVFIRPKSWIEEQEMGSFLSVAKGSEEPP 227
>pdb|1BLL|E Chain E, X-Ray Crystallographic Determination Of The Structure Of
Bovine Lens Leucine Aminopeptidase Complexed With
Amastatin: Formulation Of A Catalytic Mechanism
Featuring A Gem-Diolate Transition State
Length = 488
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 260 ETDTWRSIKEWLDEQEKGSVVYVAFGSEAKP 290
+TD + K W++EQE GS + VA GSE P
Sbjct: 198 KTDVFIRPKSWIEEQEMGSFLSVAKGSEEPP 228
>pdb|3DRX|A Chain A, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|B Chain B, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|C Chain C, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|D Chain D, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|E Chain E, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRY|A Chain A, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|B Chain B, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|C Chain C, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|D Chain D, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|E Chain E, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
Length = 202
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Query: 55 NLASMIQFVKISLPHVDNLRENAEATIDLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDW 113
N+ S+I+ VK D +RE T +P VK++ + C EE + +++ +++ W
Sbjct: 98 NITSLIKLVK------DKIRERDSKTSQVP---VKHVYRVLQCQEEELTQMVSTMSDGW 147
>pdb|2AOT|B Chain B, Histamine Methyltransferase Complexed With The
Antihistamine Drug Diphenhydramine
Length = 292
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 438 AKEMKGLFGDKGRHDRYVDNFLNYLKNHRCLRK 470
A M+ LF D G++ FLN+ H+C+++
Sbjct: 2 ASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQE 34
>pdb|2AOT|A Chain A, Histamine Methyltransferase Complexed With The
Antihistamine Drug Diphenhydramine
pdb|2AOU|A Chain A, Histamine Methyltransferase Complexed With The
Antimalarial Drug Amodiaquine
Length = 292
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 438 AKEMKGLFGDKGRHDRYVDNFLNYLKNHRCLRK 470
A M+ LF D G++ FLN+ H+C+++
Sbjct: 2 ASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQE 34
>pdb|2AOU|B Chain B, Histamine Methyltransferase Complexed With The
Antimalarial Drug Amodiaquine
Length = 292
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 438 AKEMKGLFGDKGRHDRYVDNFLNYLKNHRCLRK 470
A M+ LF D G++ FLN+ H+C+++
Sbjct: 2 ASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQE 34
>pdb|1JQE|A Chain A, Crystal Structure Analysis Of Human Histamine
Methyltransferase (Ile105 Polymorphic Variant) Complexed
With Adohcy And Antimalarial Drug Quinacrine
pdb|1JQE|B Chain B, Crystal Structure Analysis Of Human Histamine
Methyltransferase (Ile105 Polymorphic Variant) Complexed
With Adohcy And Antimalarial Drug Quinacrine
pdb|2AOW|A Chain A, Histamine Methyltransferase (Natural Variant I105)
Complexed With The Acetylcholinesterase Inhibitor And
Altzheimer's Disease Drug Tacrine
pdb|2AOW|B Chain B, Histamine Methyltransferase (Natural Variant I105)
Complexed With The Acetylcholinesterase Inhibitor And
Altzheimer's Disease Drug Tacrine
Length = 292
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 438 AKEMKGLFGDKGRHDRYVDNFLNYLKNHRCLRK 470
A M+ LF D G++ FLN+ H+C+++
Sbjct: 2 ASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQE 34
>pdb|1JQD|A Chain A, Crystal Structure Analysis Of Human Histamine
Methyltransferase (Thr105 Polymorphic Variant) Complexed
With Adohcy And Histamine
pdb|1JQD|B Chain B, Crystal Structure Analysis Of Human Histamine
Methyltransferase (Thr105 Polymorphic Variant) Complexed
With Adohcy And Histamine
pdb|2AOV|A Chain A, Histamine Methyltransferase Complexed With The Antifolate
Drug Metoprine
pdb|2AOV|B Chain B, Histamine Methyltransferase Complexed With The Antifolate
Drug Metoprine
pdb|2AOX|A Chain A, Histamine Methyltransferase (Primary Variant T105)
Complexed With The Acetylcholinesterase Inhibitor And
Altzheimer's Disease Drug Tacrine
pdb|2AOX|B Chain B, Histamine Methyltransferase (Primary Variant T105)
Complexed With The Acetylcholinesterase Inhibitor And
Altzheimer's Disease Drug Tacrine
Length = 292
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 438 AKEMKGLFGDKGRHDRYVDNFLNYLKNHRCLRK 470
A M+ LF D G++ FLN+ H+C+++
Sbjct: 2 ASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQE 34
>pdb|3T1G|A Chain A, Engineering Of Organophosphate Hydrolase By Computational
Design And Directed Evolution
Length = 353
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 202 VSHGYRFGQSLKGCDIVAVRSCMEFEPEW----LKLLEQLHRKPVIPVGQLPTTTGDGDS 257
V+ G G+ G + ++ CM +P W L+L ++ ++K V+ + + T +G S
Sbjct: 134 VNQGLHEGEQAFGIKVRSILCCMRHQPSWSLEVLELCKKYNQKTVVAMDLIGDETIEGSS 193
>pdb|3P23|A Chain A, Crystal Structure Of The Human Kinase And Rnase Domains In
Complex With Adp
pdb|3P23|B Chain B, Crystal Structure Of The Human Kinase And Rnase Domains In
Complex With Adp
pdb|3P23|C Chain C, Crystal Structure Of The Human Kinase And Rnase Domains In
Complex With Adp
pdb|3P23|D Chain D, Crystal Structure Of The Human Kinase And Rnase Domains In
Complex With Adp
Length = 432
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 306 KLPFFWVLKKRL-------GQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVG 358
K PFFW L+K+L + + E ++ P + GR VV W + + +
Sbjct: 283 KHPFFWSLEKQLQFFQDVSDRIEKESLDGPIVKQLERGGRAVVKMDWRENITVPLQTDLR 342
Query: 359 GFLTHAGWS 367
F T+ G S
Sbjct: 343 KFRTYKGGS 351
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,037,589
Number of Sequences: 62578
Number of extensions: 657350
Number of successful extensions: 1617
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1573
Number of HSP's gapped (non-prelim): 41
length of query: 478
length of database: 14,973,337
effective HSP length: 103
effective length of query: 375
effective length of database: 8,527,803
effective search space: 3197926125
effective search space used: 3197926125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)