Query 011765
Match_columns 478
No_of_seqs 120 out of 1280
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 04:59:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011765.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011765hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02670 transferase, transfer 100.0 1.2E-68 2.7E-73 529.7 46.2 465 1-466 1-467 (472)
2 PLN02208 glycosyltransferase f 100.0 1.4E-64 3E-69 499.8 43.2 433 6-465 4-440 (442)
3 PLN02764 glycosyltransferase f 100.0 4.8E-64 1E-68 492.9 45.1 443 1-467 1-448 (453)
4 PLN00414 glycosyltransferase f 100.0 1E-63 2.3E-68 494.1 44.9 439 4-467 2-443 (446)
5 PLN02863 UDP-glucoronosyl/UDP- 100.0 6.3E-63 1.4E-67 492.6 44.0 455 4-467 7-474 (477)
6 PLN02410 UDP-glucoronosyl/UDP- 100.0 6.6E-62 1.4E-66 481.9 43.7 437 1-464 1-450 (451)
7 PLN02173 UDP-glucosyl transfer 100.0 1.1E-61 2.5E-66 477.9 41.9 422 6-463 5-447 (449)
8 PLN02992 coniferyl-alcohol glu 100.0 4.8E-61 1E-65 475.9 42.1 437 6-466 5-471 (481)
9 PLN02555 limonoid glucosyltran 100.0 9.1E-61 2E-65 475.3 42.6 449 1-467 1-472 (480)
10 PLN02210 UDP-glucosyl transfer 100.0 1.3E-60 2.8E-65 474.6 43.1 435 1-463 1-454 (456)
11 PLN03007 UDP-glucosyltransfera 100.0 7.8E-61 1.7E-65 481.8 41.9 454 1-465 1-481 (482)
12 PLN02534 UDP-glycosyltransfera 100.0 3.7E-60 8E-65 471.5 42.2 452 4-465 6-487 (491)
13 PLN02562 UDP-glycosyltransfera 100.0 3.3E-60 7.1E-65 471.3 41.8 433 1-462 1-447 (448)
14 PLN02207 UDP-glycosyltransfera 100.0 2.6E-59 5.7E-64 462.7 42.1 439 7-465 4-466 (468)
15 PLN03015 UDP-glucosyl transfer 100.0 2.9E-59 6.4E-64 460.4 42.2 435 6-462 3-466 (470)
16 PLN02448 UDP-glycosyltransfera 100.0 8.1E-59 1.8E-63 465.0 40.3 434 4-464 8-457 (459)
17 PLN03004 UDP-glycosyltransfera 100.0 8.6E-59 1.9E-63 457.7 38.4 421 6-446 3-439 (451)
18 PLN02152 indole-3-acetate beta 100.0 2.6E-58 5.6E-63 454.8 40.7 426 7-462 4-454 (455)
19 PLN00164 glucosyltransferase; 100.0 4.6E-58 1E-62 459.2 43.0 439 6-465 3-474 (480)
20 PLN02554 UDP-glycosyltransfera 100.0 7E-58 1.5E-62 459.8 39.9 440 6-465 2-479 (481)
21 PLN02167 UDP-glycosyltransfera 100.0 2.5E-56 5.3E-61 447.9 41.4 445 6-464 3-472 (475)
22 PHA03392 egt ecdysteroid UDP-g 100.0 3E-51 6.5E-56 412.9 34.1 403 6-463 20-466 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 2.4E-53 5.3E-58 435.7 7.9 389 8-451 2-429 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 1.9E-45 4.2E-50 365.6 30.7 388 12-462 1-390 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 7.8E-45 1.7E-49 362.9 27.6 380 7-460 1-400 (401)
26 COG1819 Glycosyl transferases, 100.0 2.2E-44 4.7E-49 353.7 23.7 399 6-465 1-402 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 1E-41 2.2E-46 349.8 27.3 411 6-464 5-455 (496)
28 PRK12446 undecaprenyldiphospho 100.0 1.2E-25 2.6E-30 218.3 31.5 318 8-440 3-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 2.7E-26 5.9E-31 221.9 23.1 306 7-425 1-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 1.5E-23 3.2E-28 201.1 30.4 342 7-461 1-354 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 1.1E-23 2.4E-28 203.2 23.5 310 8-435 1-318 (321)
32 PRK00726 murG undecaprenyldiph 99.9 7.9E-21 1.7E-25 186.8 31.8 343 6-463 1-356 (357)
33 cd03785 GT1_MurG MurG is an N- 99.9 5.3E-19 1.1E-23 173.4 29.4 332 8-453 1-346 (350)
34 TIGR01133 murG undecaprenyldip 99.8 7.5E-18 1.6E-22 165.1 28.7 331 7-456 1-346 (348)
35 COG4671 Predicted glycosyl tra 99.8 1.2E-17 2.7E-22 152.4 22.1 340 4-427 7-364 (400)
36 PRK13609 diacylglycerol glucos 99.8 1.9E-17 4.1E-22 164.1 23.0 352 5-463 3-370 (380)
37 TIGR00215 lpxB lipid-A-disacch 99.8 1.4E-17 3E-22 164.3 19.8 351 7-460 6-384 (385)
38 PRK13608 diacylglycerol glucos 99.7 9.3E-16 2E-20 152.1 26.5 168 275-465 200-372 (391)
39 TIGR03590 PseG pseudaminic aci 99.7 6.2E-16 1.4E-20 145.5 21.1 254 15-394 12-278 (279)
40 PLN02605 monogalactosyldiacylg 99.7 6.5E-15 1.4E-19 145.8 26.1 111 338-461 265-378 (382)
41 PRK00025 lpxB lipid-A-disaccha 99.7 5.6E-15 1.2E-19 146.6 21.8 346 6-462 1-375 (380)
42 TIGR03492 conserved hypothetic 99.6 1.4E-12 2.9E-17 128.9 27.9 351 21-460 11-394 (396)
43 PF04101 Glyco_tran_28_C: Glyc 99.5 2.7E-16 5.8E-21 136.9 -2.4 140 279-437 1-150 (167)
44 cd03814 GT1_like_2 This family 99.5 1.8E-11 3.8E-16 120.1 30.5 338 17-462 14-363 (364)
45 PLN02871 UDP-sulfoquinovose:DA 99.5 6.4E-11 1.4E-15 120.6 34.9 351 4-460 56-429 (465)
46 cd03823 GT1_ExpE7_like This fa 99.5 3.5E-10 7.7E-15 110.5 32.4 159 277-462 190-357 (359)
47 cd04962 GT1_like_5 This family 99.4 4E-10 8.7E-15 111.3 31.2 352 7-464 1-370 (371)
48 COG3980 spsG Spore coat polysa 99.4 2.2E-11 4.8E-16 108.6 19.5 301 7-449 1-311 (318)
49 PF03033 Glyco_transf_28: Glyc 99.4 7.9E-14 1.7E-18 117.4 2.2 126 9-143 1-133 (139)
50 cd03794 GT1_wbuB_like This fam 99.4 7E-10 1.5E-14 109.5 28.2 144 277-445 219-379 (394)
51 cd03808 GT1_cap1E_like This fa 99.4 2.7E-09 5.9E-14 103.9 31.8 327 8-444 1-342 (359)
52 cd03818 GT1_ExpC_like This fam 99.4 4.1E-09 9E-14 105.1 33.3 93 337-444 280-379 (396)
53 cd03817 GT1_UGDG_like This fam 99.3 1.4E-09 3E-14 106.8 28.5 325 8-435 1-347 (374)
54 cd03801 GT1_YqgM_like This fam 99.3 1.8E-09 4E-14 105.4 28.5 342 17-462 14-373 (374)
55 PRK10307 putative glycosyl tra 99.3 2E-08 4.2E-13 100.9 35.8 117 338-467 284-410 (412)
56 PF04007 DUF354: Protein of un 99.3 2.8E-09 6.2E-14 101.5 25.9 301 7-427 1-309 (335)
57 cd03800 GT1_Sucrose_synthase T 99.3 8.8E-09 1.9E-13 102.7 30.8 89 337-440 282-377 (398)
58 cd03816 GT1_ALG1_like This fam 99.3 2.3E-08 5.1E-13 100.2 33.0 91 338-445 294-398 (415)
59 cd03820 GT1_amsD_like This fam 99.3 8.8E-09 1.9E-13 99.8 28.7 320 8-446 1-334 (348)
60 cd03798 GT1_wlbH_like This fam 99.2 1.9E-08 4.1E-13 98.5 30.6 347 16-463 13-375 (377)
61 cd03795 GT1_like_4 This family 99.2 7.4E-09 1.6E-13 101.5 26.8 142 278-444 191-345 (357)
62 PRK05749 3-deoxy-D-manno-octul 99.2 6.5E-09 1.4E-13 104.8 26.4 99 349-460 314-419 (425)
63 TIGR03449 mycothiol_MshA UDP-N 99.2 1E-07 2.3E-12 95.4 34.7 112 338-464 283-401 (405)
64 cd03825 GT1_wcfI_like This fam 99.2 1.9E-08 4.2E-13 98.9 28.2 112 338-464 244-364 (365)
65 cd03822 GT1_ecORF704_like This 99.2 5.4E-08 1.2E-12 95.5 29.2 110 337-462 246-365 (366)
66 cd03786 GT1_UDP-GlcNAc_2-Epime 99.2 6.1E-10 1.3E-14 109.8 15.0 142 276-439 197-345 (363)
67 TIGR00236 wecB UDP-N-acetylglu 99.2 1.8E-09 3.8E-14 106.6 18.2 157 277-459 197-362 (365)
68 cd03819 GT1_WavL_like This fam 99.1 6.5E-08 1.4E-12 94.8 28.6 148 277-440 184-340 (355)
69 cd03811 GT1_WabH_like This fam 99.1 2.6E-08 5.6E-13 96.7 24.7 322 8-440 1-341 (353)
70 PRK14089 ipid-A-disaccharide s 99.1 3.4E-08 7.3E-13 95.0 23.5 160 277-460 167-346 (347)
71 cd03805 GT1_ALG2_like This fam 99.1 2.9E-07 6.2E-12 91.7 31.3 86 337-438 279-371 (392)
72 cd03821 GT1_Bme6_like This fam 99.1 3.9E-07 8.5E-12 89.3 30.1 92 337-445 261-359 (375)
73 cd03799 GT1_amsK_like This is 99.1 2.3E-07 5E-12 90.8 28.2 144 277-440 178-336 (355)
74 cd03796 GT1_PIG-A_like This fa 99.0 4.4E-07 9.6E-12 90.6 28.7 165 277-466 192-369 (398)
75 TIGR02149 glgA_Coryne glycogen 99.0 6.4E-07 1.4E-11 89.1 29.3 170 278-464 201-386 (388)
76 cd04951 GT1_WbdM_like This fam 99.0 1.9E-07 4E-12 91.7 24.9 109 338-462 245-358 (360)
77 PRK09922 UDP-D-galactose:(gluc 99.0 1.4E-07 3E-12 92.8 23.5 129 278-427 180-323 (359)
78 cd03802 GT1_AviGT4_like This f 99.0 4E-07 8.7E-12 88.4 26.3 128 279-427 172-307 (335)
79 cd05844 GT1_like_7 Glycosyltra 99.0 4.6E-07 9.9E-12 89.3 26.5 89 337-440 244-345 (367)
80 TIGR02468 sucrsPsyn_pln sucros 99.0 1.3E-06 2.8E-11 93.8 31.1 184 264-464 467-670 (1050)
81 cd03807 GT1_WbnK_like This fam 99.0 1.8E-06 3.9E-11 84.3 30.4 107 338-461 251-363 (365)
82 TIGR02472 sucr_P_syn_N sucrose 99.0 1.2E-06 2.6E-11 88.6 29.6 111 338-461 317-437 (439)
83 TIGR03088 stp2 sugar transfera 99.0 9.6E-07 2.1E-11 87.4 27.9 111 339-464 256-372 (374)
84 cd03812 GT1_CapH_like This fam 98.9 2.4E-07 5.2E-12 90.9 22.9 142 277-442 191-342 (358)
85 cd04955 GT1_like_6 This family 98.9 1.5E-06 3.2E-11 85.4 28.0 155 281-462 196-362 (363)
86 COG1519 KdtA 3-deoxy-D-manno-o 98.9 1.6E-06 3.5E-11 83.0 26.4 318 10-444 52-399 (419)
87 cd03809 GT1_mtfB_like This fam 98.9 7.6E-07 1.6E-11 87.2 23.3 104 337-457 252-362 (365)
88 TIGR03087 stp1 sugar transfera 98.8 6.8E-07 1.5E-11 89.2 22.7 110 336-462 278-394 (397)
89 PLN02846 digalactosyldiacylgly 98.8 4.7E-06 1E-10 83.2 27.2 102 342-466 288-393 (462)
90 PLN02275 transferase, transfer 98.8 1E-05 2.3E-10 79.8 29.0 75 338-426 286-371 (371)
91 TIGR03568 NeuC_NnaA UDP-N-acet 98.8 3.7E-07 8E-12 89.5 16.8 141 267-427 191-338 (365)
92 PRK15427 colanic acid biosynth 98.7 1.5E-05 3.3E-10 79.6 28.5 113 337-463 278-404 (406)
93 PRK01021 lpxB lipid-A-disaccha 98.7 1.2E-05 2.6E-10 81.5 26.8 207 225-458 370-603 (608)
94 cd03792 GT1_Trehalose_phosphor 98.7 1.1E-05 2.4E-10 79.7 26.6 110 338-464 252-371 (372)
95 TIGR02470 sucr_synth sucrose s 98.7 7.7E-05 1.7E-09 78.7 32.3 91 338-441 619-723 (784)
96 PRK15484 lipopolysaccharide 1, 98.7 7.9E-05 1.7E-09 73.9 30.9 113 338-464 257-377 (380)
97 cd03804 GT1_wbaZ_like This fam 98.7 3E-06 6.5E-11 83.1 20.2 137 280-442 197-338 (351)
98 PRK15179 Vi polysaccharide bio 98.7 6E-05 1.3E-09 79.3 30.6 113 337-462 573-691 (694)
99 COG0763 LpxB Lipid A disacchar 98.6 6.4E-06 1.4E-10 78.1 20.9 212 225-462 145-379 (381)
100 PRK00654 glgA glycogen synthas 98.6 2.5E-05 5.4E-10 79.6 26.7 170 277-465 281-463 (466)
101 KOG3349 Predicted glycosyltran 98.6 3.8E-07 8.2E-12 73.7 9.2 121 278-407 4-135 (170)
102 cd03791 GT1_Glycogen_synthase_ 98.5 9.1E-05 2E-09 75.9 27.8 167 277-462 295-474 (476)
103 PLN00142 sucrose synthase 98.5 0.00017 3.6E-09 76.3 27.8 70 360-442 670-747 (815)
104 PF02350 Epimerase_2: UDP-N-ac 98.5 1.3E-06 2.7E-11 84.9 11.3 158 275-462 178-345 (346)
105 PF02684 LpxB: Lipid-A-disacch 98.5 7.2E-05 1.6E-09 72.7 23.1 177 238-437 151-346 (373)
106 TIGR02095 glgA glycogen/starch 98.4 0.00083 1.8E-08 68.7 31.1 164 278-464 291-472 (473)
107 PLN02949 transferase, transfer 98.4 0.00035 7.5E-09 70.7 27.3 112 337-463 334-455 (463)
108 COG0381 WecB UDP-N-acetylgluco 98.4 7.8E-05 1.7E-09 71.1 20.4 355 5-464 2-374 (383)
109 cd04950 GT1_like_1 Glycosyltra 98.3 0.0019 4.1E-08 63.9 30.0 109 337-464 253-371 (373)
110 PRK10125 putative glycosyl tra 98.3 0.002 4.4E-08 64.3 30.1 115 279-422 242-365 (405)
111 PLN02316 synthase/transferase 98.2 0.0055 1.2E-07 66.8 32.4 116 339-464 901-1033(1036)
112 cd03806 GT1_ALG11_like This fa 98.2 0.0027 5.8E-08 63.8 28.0 77 337-427 304-391 (419)
113 cd04946 GT1_AmsK_like This fam 98.2 0.00016 3.6E-09 72.3 18.8 148 277-444 229-390 (407)
114 cd04949 GT1_gtfA_like This fam 98.1 0.00042 9E-09 68.4 20.7 89 338-438 261-352 (372)
115 PF00534 Glycos_transf_1: Glyc 98.1 2.9E-05 6.4E-10 67.5 10.4 92 337-443 72-170 (172)
116 PRK09814 beta-1,6-galactofuran 98.1 0.0016 3.6E-08 63.2 23.2 109 338-460 207-331 (333)
117 TIGR02918 accessory Sec system 98.1 0.0014 3E-08 67.1 23.5 118 337-463 375-498 (500)
118 PRK14099 glycogen synthase; Pr 98.0 0.0061 1.3E-07 62.3 26.4 100 354-466 369-480 (485)
119 PLN02501 digalactosyldiacylgly 97.9 0.013 2.7E-07 60.9 26.2 100 340-462 603-707 (794)
120 cd01635 Glycosyltransferase_GT 97.9 0.0013 2.8E-08 59.4 17.5 69 16-139 12-83 (229)
121 COG5017 Uncharacterized conser 97.8 0.00061 1.3E-08 54.4 12.1 129 280-427 2-141 (161)
122 PF13844 Glyco_transf_41: Glyc 97.7 0.0006 1.3E-08 67.8 13.8 169 275-463 282-465 (468)
123 PRK15490 Vi polysaccharide bio 97.7 0.039 8.4E-07 56.3 25.9 65 337-407 454-523 (578)
124 PRK10017 colanic acid biosynth 97.7 0.078 1.7E-06 53.0 29.6 168 267-447 224-409 (426)
125 COG1817 Uncharacterized protei 97.7 0.014 3E-07 53.9 20.0 112 7-142 1-115 (346)
126 PLN02939 transferase, transfer 97.5 0.15 3.2E-06 55.3 28.8 118 338-465 837-967 (977)
127 PF13692 Glyco_trans_1_4: Glyc 97.4 0.00061 1.3E-08 56.4 7.6 126 279-427 3-134 (135)
128 cd03813 GT1_like_3 This family 97.4 0.004 8.6E-08 63.7 15.1 93 337-444 353-455 (475)
129 TIGR02193 heptsyl_trn_I lipopo 97.4 0.0072 1.6E-07 58.3 15.9 108 8-136 1-111 (319)
130 PF13477 Glyco_trans_4_2: Glyc 97.2 0.0052 1.1E-07 51.1 11.5 103 8-139 1-107 (139)
131 PF06258 Mito_fiss_Elm1: Mitoc 96.7 0.38 8.1E-06 46.0 20.4 59 347-407 221-283 (311)
132 PF13579 Glyco_trans_4_4: Glyc 96.7 0.0042 9.2E-08 52.6 6.2 96 21-139 5-104 (160)
133 PRK10422 lipopolysaccharide co 96.7 0.13 2.9E-06 50.3 17.4 107 5-136 4-113 (352)
134 PHA01630 putative group 1 glyc 96.5 0.14 3.1E-06 49.5 15.8 107 345-464 197-330 (331)
135 TIGR02201 heptsyl_trn_III lipo 96.3 0.28 6E-06 47.9 17.4 106 8-137 1-109 (344)
136 PHA01633 putative glycosyl tra 96.3 0.22 4.8E-06 48.0 16.1 100 338-445 201-324 (335)
137 PF06722 DUF1205: Protein of u 96.2 0.0066 1.4E-07 46.8 4.2 61 266-329 29-94 (97)
138 PRK14098 glycogen synthase; Pr 96.2 0.083 1.8E-06 54.1 13.4 170 278-465 307-486 (489)
139 PRK10916 ADP-heptose:LPS hepto 96.0 0.11 2.4E-06 50.7 12.7 103 7-136 1-106 (348)
140 COG3914 Spy Predicted O-linked 95.9 0.18 3.9E-06 50.8 13.2 134 275-424 427-574 (620)
141 TIGR02195 heptsyl_trn_II lipop 95.7 0.77 1.7E-05 44.5 16.9 102 8-136 1-105 (334)
142 PRK10964 ADP-heptose:LPS hepto 95.4 0.96 2.1E-05 43.6 16.4 44 7-50 1-46 (322)
143 KOG4626 O-linked N-acetylgluco 95.4 0.2 4.4E-06 50.7 11.4 123 275-406 756-889 (966)
144 PF01975 SurE: Survival protei 95.3 0.12 2.7E-06 45.5 8.8 120 7-139 1-133 (196)
145 PF02571 CbiJ: Precorrin-6x re 95.2 1.4 3E-05 40.6 15.9 93 7-137 1-99 (249)
146 COG3660 Predicted nucleoside-d 95.2 2.4 5.2E-05 38.6 18.6 77 298-382 189-271 (329)
147 PF13439 Glyco_transf_4: Glyco 95.1 0.24 5.3E-06 42.4 10.2 100 17-142 12-112 (177)
148 cd03788 GT1_TPS Trehalose-6-Ph 95.0 2.1 4.6E-05 43.6 18.3 101 342-461 345-458 (460)
149 COG0859 RfaF ADP-heptose:LPS h 94.9 1.2 2.6E-05 43.2 15.4 106 6-137 1-108 (334)
150 cd03789 GT1_LPS_heptosyltransf 94.8 1.6 3.6E-05 41.0 16.0 102 8-136 1-105 (279)
151 PF12000 Glyco_trans_4_3: Gkyc 94.6 0.58 1.3E-05 40.2 10.9 94 32-139 1-96 (171)
152 TIGR02919 accessory Sec system 94.2 3.7 8.1E-05 41.3 17.3 140 277-448 283-428 (438)
153 PF13524 Glyco_trans_1_2: Glyc 93.9 0.61 1.3E-05 35.4 8.9 81 363-459 9-91 (92)
154 COG1618 Predicted nucleotide k 93.9 0.32 6.9E-06 40.9 7.5 56 5-66 4-59 (179)
155 COG0438 RfaG Glycosyltransfera 93.5 5.3 0.00011 37.8 17.0 88 338-440 257-351 (381)
156 TIGR03713 acc_sec_asp1 accesso 93.2 0.7 1.5E-05 47.6 10.4 87 338-444 409-501 (519)
157 COG0496 SurE Predicted acid ph 93.0 0.94 2E-05 41.3 9.7 112 7-139 1-125 (252)
158 TIGR00715 precor6x_red precorr 92.8 1.1 2.3E-05 41.5 10.1 91 7-137 1-98 (256)
159 PF00731 AIRC: AIR carboxylase 92.3 2 4.3E-05 36.0 10.1 138 279-447 2-148 (150)
160 COG4370 Uncharacterized protei 91.7 1.5 3.3E-05 40.7 9.3 105 345-464 302-409 (412)
161 TIGR02400 trehalose_OtsA alpha 91.2 2.3 4.9E-05 43.2 11.3 103 343-462 341-454 (456)
162 PF08660 Alg14: Oligosaccharid 91.2 1.1 2.3E-05 38.7 7.6 115 12-139 3-129 (170)
163 PRK13933 stationary phase surv 90.5 6 0.00013 36.4 12.3 116 7-139 1-129 (253)
164 PRK13932 stationary phase surv 90.4 9.2 0.0002 35.3 13.3 118 4-139 3-133 (257)
165 PF06925 MGDG_synth: Monogalac 88.4 0.24 5.2E-06 42.8 1.5 44 96-139 75-124 (169)
166 PF02951 GSH-S_N: Prokaryotic 88.3 0.78 1.7E-05 36.8 4.2 41 7-47 1-44 (119)
167 PRK08057 cobalt-precorrin-6x r 86.5 4.3 9.3E-05 37.4 8.6 92 6-139 2-100 (248)
168 PF07429 Glyco_transf_56: 4-al 85.6 27 0.00059 33.6 13.4 82 338-427 245-332 (360)
169 PRK06849 hypothetical protein; 85.1 3.1 6.7E-05 41.3 7.5 37 5-45 3-39 (389)
170 PRK00346 surE 5'(3')-nucleotid 84.9 21 0.00045 32.9 12.1 111 7-139 1-124 (250)
171 COG1703 ArgK Putative periplas 84.5 22 0.00047 33.5 11.9 113 4-137 49-172 (323)
172 PRK13935 stationary phase surv 84.5 24 0.00052 32.5 12.3 115 7-139 1-128 (253)
173 COG0003 ArsA Predicted ATPase 84.0 5.1 0.00011 38.4 8.1 44 6-49 1-45 (322)
174 PLN03063 alpha,alpha-trehalose 83.2 16 0.00034 40.0 12.4 105 345-466 363-479 (797)
175 PF02310 B12-binding: B12 bind 82.9 11 0.00023 30.1 8.6 37 7-43 1-37 (121)
176 PRK02261 methylaspartate mutas 82.9 2.6 5.7E-05 34.8 5.0 43 5-47 2-44 (137)
177 cd03793 GT1_Glycogen_synthase_ 82.5 5.4 0.00012 41.2 7.9 77 348-427 468-551 (590)
178 COG0052 RpsB Ribosomal protein 82.1 4 8.8E-05 36.9 6.1 33 111-143 157-191 (252)
179 KOG2941 Beta-1,4-mannosyltrans 81.9 51 0.0011 31.7 27.5 128 4-144 10-142 (444)
180 PF05159 Capsule_synth: Capsul 81.7 12 0.00026 34.9 9.7 42 340-384 185-226 (269)
181 PF09314 DUF1972: Domain of un 81.5 36 0.00077 29.8 14.5 57 7-67 2-63 (185)
182 PRK13934 stationary phase surv 81.5 32 0.0007 31.9 11.9 41 7-49 1-41 (266)
183 PF01012 ETF: Electron transfe 80.4 7.2 0.00016 33.3 7.1 105 9-139 2-122 (164)
184 PRK02797 4-alpha-L-fucosyltran 80.2 40 0.00087 32.0 12.1 82 338-427 206-293 (322)
185 TIGR00087 surE 5'/3'-nucleotid 80.0 27 0.00058 32.1 10.9 115 7-139 1-128 (244)
186 COG2910 Putative NADH-flavin r 79.8 2.2 4.7E-05 36.8 3.4 35 7-46 1-36 (211)
187 cd02067 B12-binding B12 bindin 79.7 2.8 6.1E-05 33.6 4.1 37 8-44 1-37 (119)
188 COG0041 PurE Phosphoribosylcar 79.4 36 0.00077 28.4 11.2 136 279-447 4-150 (162)
189 PF02441 Flavoprotein: Flavopr 79.0 1.9 4.1E-05 35.2 2.9 45 7-52 1-45 (129)
190 PF04464 Glyphos_transf: CDP-G 78.2 4.1 8.8E-05 40.1 5.5 110 338-459 252-368 (369)
191 PF02844 GARS_N: Phosphoribosy 76.4 13 0.00028 28.8 6.5 87 7-136 1-91 (100)
192 PRK09620 hypothetical protein; 75.9 30 0.00064 31.5 9.9 21 23-43 32-52 (229)
193 PF02374 ArsA_ATPase: Anion-tr 75.4 4.8 0.0001 38.4 4.9 41 7-47 1-42 (305)
194 PRK13931 stationary phase surv 73.5 52 0.0011 30.5 11.0 98 23-139 16-129 (261)
195 cd00550 ArsA_ATPase Oxyanion-t 73.4 13 0.00028 34.4 7.1 37 9-45 3-39 (254)
196 PRK13789 phosphoribosylamine-- 73.2 10 0.00022 38.2 6.8 92 5-136 3-97 (426)
197 PF08323 Glyco_transf_5: Starc 73.0 9.6 0.00021 35.1 6.2 26 19-44 18-43 (245)
198 PF12146 Hydrolase_4: Putative 72.9 8.2 0.00018 28.4 4.6 36 6-41 15-50 (79)
199 TIGR02015 BchY chlorophyllide 72.5 12 0.00027 37.5 7.2 93 8-137 287-379 (422)
200 smart00851 MGS MGS-like domain 72.5 12 0.00026 28.2 5.6 79 23-135 2-89 (90)
201 PF01075 Glyco_transf_9: Glyco 72.2 7.6 0.00016 35.6 5.4 99 276-382 104-208 (247)
202 cd00532 MGS-like MGS-like doma 71.7 13 0.00028 29.4 5.9 85 19-137 10-105 (112)
203 PRK05595 replicative DNA helic 71.6 18 0.00038 36.7 8.2 41 9-49 204-245 (444)
204 KOG0853 Glycosyltransferase [C 71.1 3 6.6E-05 42.0 2.5 67 363-441 377-443 (495)
205 PLN02948 phosphoribosylaminoim 70.4 73 0.0016 33.5 12.6 139 277-447 410-558 (577)
206 PRK09165 replicative DNA helic 69.7 20 0.00043 36.9 8.1 41 9-49 220-275 (497)
207 TIGR01162 purE phosphoribosyla 69.6 68 0.0015 27.1 11.0 133 282-446 3-145 (156)
208 PRK06321 replicative DNA helic 69.2 30 0.00065 35.3 9.2 41 9-49 229-270 (472)
209 cd01965 Nitrogenase_MoFe_beta_ 68.9 13 0.00027 37.5 6.5 34 101-137 362-395 (428)
210 COG2099 CobK Precorrin-6x redu 68.6 40 0.00087 30.9 8.7 91 6-137 2-99 (257)
211 COG2894 MinD Septum formation 68.5 22 0.00048 31.8 6.9 36 8-43 3-40 (272)
212 PRK08760 replicative DNA helic 68.1 24 0.00053 36.0 8.3 41 9-49 232-273 (476)
213 PRK10867 signal recognition pa 67.5 37 0.00081 34.1 9.3 43 6-48 100-143 (433)
214 TIGR02398 gluc_glyc_Psyn gluco 66.9 1.1E+02 0.0023 31.5 12.5 107 340-463 364-481 (487)
215 cd01424 MGS_CPS_II Methylglyox 66.7 25 0.00054 27.6 6.5 84 18-136 10-100 (110)
216 PRK12342 hypothetical protein; 66.3 12 0.00026 34.5 5.2 39 101-139 100-144 (254)
217 PF07355 GRDB: Glycine/sarcosi 65.5 11 0.00024 36.1 4.8 48 90-137 60-117 (349)
218 cd01423 MGS_CPS_I_III Methylgl 64.9 25 0.00054 27.9 6.3 87 19-136 11-106 (116)
219 PRK07773 replicative DNA helic 64.7 31 0.00067 38.4 8.9 41 9-49 220-261 (886)
220 cd00984 DnaB_C DnaB helicase C 64.7 41 0.00088 30.6 8.6 42 8-49 15-57 (242)
221 PRK05636 replicative DNA helic 64.6 18 0.0004 37.2 6.7 42 8-49 267-309 (505)
222 PRK05920 aromatic acid decarbo 64.6 6.5 0.00014 34.9 3.0 46 5-51 2-47 (204)
223 PF02142 MGS: MGS-like domain 64.4 3.3 7.1E-05 31.7 1.0 84 23-135 2-94 (95)
224 PRK08305 spoVFB dipicolinate s 64.3 10 0.00022 33.4 4.1 45 6-50 5-49 (196)
225 PF00551 Formyl_trans_N: Formy 64.1 36 0.00077 29.6 7.6 106 7-139 1-109 (181)
226 PRK08506 replicative DNA helic 64.1 37 0.00081 34.7 8.8 42 8-49 194-235 (472)
227 PRK06732 phosphopantothenate-- 63.9 20 0.00043 32.6 6.1 21 23-43 29-49 (229)
228 PRK03359 putative electron tra 62.4 16 0.00034 33.9 5.1 39 101-139 103-147 (256)
229 PRK11199 tyrA bifunctional cho 62.2 46 0.00099 32.8 8.8 35 4-43 96-131 (374)
230 TIGR00460 fmt methionyl-tRNA f 62.1 27 0.0006 33.4 7.0 33 7-44 1-33 (313)
231 TIGR03600 phage_DnaB phage rep 61.9 20 0.00042 36.1 6.3 41 9-49 197-238 (421)
232 KOG2825 Putative arsenite-tran 61.1 19 0.0004 32.9 5.1 46 4-49 16-62 (323)
233 PF04127 DFP: DNA / pantothena 60.9 8.4 0.00018 33.7 3.0 22 23-44 32-53 (185)
234 PRK07313 phosphopantothenoylcy 60.7 9.8 0.00021 33.2 3.4 44 7-51 2-45 (182)
235 cd02070 corrinoid_protein_B12- 60.4 17 0.00036 32.3 4.9 40 6-45 82-121 (201)
236 PRK01231 ppnK inorganic polyph 60.4 50 0.0011 31.3 8.3 53 354-428 62-118 (295)
237 PRK13768 GTPase; Provisional 60.0 44 0.00096 30.9 7.8 39 7-45 3-41 (253)
238 PRK06067 flagellar accessory p 59.5 9 0.00019 34.9 3.1 40 8-47 27-66 (234)
239 PRK06249 2-dehydropantoate 2-r 59.4 13 0.00029 35.6 4.4 44 4-53 3-46 (313)
240 COG1663 LpxK Tetraacyldisaccha 59.1 17 0.00037 34.7 4.9 35 12-46 55-89 (336)
241 PRK06988 putative formyltransf 58.9 35 0.00076 32.7 7.1 34 6-44 2-35 (312)
242 PRK05986 cob(I)alamin adenolsy 58.7 1.1E+02 0.0023 27.0 9.4 99 7-120 23-125 (191)
243 PF04413 Glycos_transf_N: 3-De 58.6 17 0.00037 31.8 4.6 99 9-139 23-126 (186)
244 cd07035 TPP_PYR_POX_like Pyrim 58.4 1.1E+02 0.0023 25.5 9.5 27 358-384 61-93 (155)
245 PRK05748 replicative DNA helic 58.3 56 0.0012 33.2 8.9 42 8-49 205-247 (448)
246 TIGR02370 pyl_corrinoid methyl 58.0 21 0.00046 31.6 5.1 43 5-47 83-125 (197)
247 COG1797 CobB Cobyrinic acid a, 57.4 19 0.00041 35.7 5.0 38 8-45 2-41 (451)
248 COG2185 Sbm Methylmalonyl-CoA 57.4 18 0.00039 29.9 4.1 39 5-43 11-49 (143)
249 PRK04885 ppnK inorganic polyph 56.8 17 0.00037 33.8 4.5 51 358-428 37-93 (265)
250 PF06506 PrpR_N: Propionate ca 56.7 16 0.00034 31.7 4.0 33 353-386 31-63 (176)
251 PRK07206 hypothetical protein; 56.0 42 0.00091 33.5 7.6 34 7-45 3-36 (416)
252 PF02606 LpxK: Tetraacyldisacc 56.0 38 0.00083 32.6 6.8 36 12-47 43-78 (326)
253 cd01425 RPS2 Ribosomal protein 55.7 22 0.00047 31.4 4.8 34 109-142 126-161 (193)
254 PRK02155 ppnK NAD(+)/NADH kina 55.6 22 0.00047 33.7 5.0 53 354-428 63-119 (291)
255 TIGR00665 DnaB replicative DNA 55.6 53 0.0011 33.1 8.2 42 8-49 197-239 (434)
256 PLN02712 arogenate dehydrogena 55.5 19 0.00041 38.6 5.1 38 4-46 50-87 (667)
257 TIGR03878 thermo_KaiC_2 KaiC d 55.3 54 0.0012 30.4 7.6 39 8-46 38-76 (259)
258 TIGR01917 gly_red_sel_B glycin 55.0 21 0.00045 35.2 4.8 49 90-138 56-114 (431)
259 PRK14501 putative bifunctional 54.9 35 0.00076 37.1 7.1 113 341-466 345-464 (726)
260 TIGR01918 various_sel_PB selen 54.7 21 0.00046 35.2 4.8 49 90-138 56-114 (431)
261 cd02071 MM_CoA_mut_B12_BD meth 54.5 22 0.00047 28.6 4.3 39 8-46 1-39 (122)
262 PRK05784 phosphoribosylamine-- 54.5 69 0.0015 32.9 8.8 31 7-42 1-33 (486)
263 PRK05647 purN phosphoribosylgl 53.9 48 0.001 29.4 6.7 35 6-43 1-37 (200)
264 TIGR00708 cobA cob(I)alamin ad 53.5 1.5E+02 0.0032 25.6 10.0 97 6-120 5-107 (173)
265 TIGR01285 nifN nitrogenase mol 53.5 65 0.0014 32.5 8.4 86 7-137 312-397 (432)
266 COG2230 Cfa Cyclopropane fatty 52.8 13 0.00028 34.8 3.0 38 364-401 81-121 (283)
267 PRK12446 undecaprenyldiphospho 52.6 81 0.0018 30.8 8.7 28 354-383 91-121 (352)
268 PRK06718 precorrin-2 dehydroge 52.6 1.7E+02 0.0036 26.0 12.6 151 276-448 10-165 (202)
269 COG4088 Predicted nucleotide k 52.4 19 0.00041 32.0 3.6 38 7-44 2-39 (261)
270 PF00862 Sucrose_synth: Sucros 52.2 54 0.0012 33.3 7.2 115 18-139 297-432 (550)
271 PF01470 Peptidase_C15: Pyrogl 51.8 26 0.00056 31.2 4.6 26 7-32 1-28 (202)
272 COG2874 FlaH Predicted ATPases 51.8 23 0.0005 31.6 4.1 37 9-45 31-67 (235)
273 PRK14077 pnk inorganic polypho 51.8 24 0.00053 33.3 4.7 53 354-428 64-120 (287)
274 TIGR02655 circ_KaiC circadian 51.7 19 0.00041 36.9 4.3 43 8-50 265-307 (484)
275 COG0299 PurN Folate-dependent 51.4 1.3E+02 0.0027 26.6 8.4 130 279-443 53-186 (200)
276 TIGR00959 ffh signal recogniti 51.4 86 0.0019 31.5 8.7 41 8-48 101-142 (428)
277 PRK03372 ppnK inorganic polyph 51.3 27 0.00059 33.3 4.9 51 358-428 74-128 (306)
278 COG1090 Predicted nucleoside-d 50.9 86 0.0019 29.3 7.8 23 24-46 12-34 (297)
279 PRK06029 3-octaprenyl-4-hydrox 50.7 14 0.00031 32.3 2.7 45 6-51 1-46 (185)
280 PRK12311 rpsB 30S ribosomal pr 50.6 20 0.00043 34.4 3.9 34 110-143 152-187 (326)
281 CHL00072 chlL photochlorophyll 50.5 28 0.00061 32.9 5.0 40 7-46 1-40 (290)
282 PLN02470 acetolactate synthase 50.4 81 0.0018 33.3 8.9 28 356-383 76-109 (585)
283 PF02702 KdpD: Osmosensitive K 50.4 28 0.00062 30.7 4.4 39 6-44 5-43 (211)
284 cd01121 Sms Sms (bacterial rad 50.3 49 0.0011 32.6 6.7 39 9-47 85-123 (372)
285 PRK08006 replicative DNA helic 50.2 84 0.0018 32.1 8.6 42 8-49 226-268 (471)
286 PRK05234 mgsA methylglyoxal sy 50.0 1.1E+02 0.0023 25.5 7.7 100 6-141 4-116 (142)
287 TIGR02195 heptsyl_trn_II lipop 49.8 95 0.0021 29.8 8.7 100 6-139 174-278 (334)
288 PF10933 DUF2827: Protein of u 49.8 1.2E+02 0.0026 29.4 8.9 95 346-461 261-362 (364)
289 cd02069 methionine_synthase_B1 49.5 34 0.00073 30.7 5.0 43 5-47 87-129 (213)
290 PRK11823 DNA repair protein Ra 49.2 27 0.00058 35.4 4.8 41 8-48 82-122 (446)
291 COG2210 Peroxiredoxin family p 49.1 35 0.00075 28.0 4.5 39 6-44 2-41 (137)
292 PLN02712 arogenate dehydrogena 49.0 24 0.00053 37.7 4.7 36 4-44 367-402 (667)
293 PRK13194 pyrrolidone-carboxyla 49.0 49 0.0011 29.6 5.9 26 7-32 1-28 (208)
294 TIGR00725 conserved hypothetic 48.9 1.7E+02 0.0036 24.9 10.7 99 264-384 20-123 (159)
295 PRK13196 pyrrolidone-carboxyla 48.9 45 0.00097 29.9 5.7 28 6-33 1-30 (211)
296 PRK07004 replicative DNA helic 48.8 90 0.002 31.8 8.5 41 9-49 216-257 (460)
297 PF01210 NAD_Gly3P_dh_N: NAD-d 48.8 16 0.00034 31.0 2.7 32 8-44 1-32 (157)
298 cd07039 TPP_PYR_POX Pyrimidine 48.8 1.7E+02 0.0037 24.9 10.3 27 357-383 64-96 (164)
299 PRK00784 cobyric acid synthase 48.7 1.7E+02 0.0036 30.1 10.6 35 8-42 4-39 (488)
300 TIGR02852 spore_dpaB dipicolin 48.6 24 0.00052 30.9 3.8 40 8-47 2-41 (187)
301 PF06792 UPF0261: Uncharacteri 48.5 2.9E+02 0.0062 27.5 14.2 95 275-384 183-278 (403)
302 PRK04539 ppnK inorganic polyph 48.2 44 0.00095 31.7 5.8 53 354-428 68-124 (296)
303 PRK01911 ppnK inorganic polyph 48.1 29 0.00062 32.9 4.5 53 354-428 64-120 (292)
304 COG1066 Sms Predicted ATP-depe 47.0 31 0.00067 34.1 4.5 103 8-139 95-218 (456)
305 PRK02231 ppnK inorganic polyph 46.8 29 0.00062 32.5 4.3 57 349-427 37-97 (272)
306 PRK00207 sulfur transfer compl 46.7 39 0.00084 27.5 4.6 39 7-45 1-43 (128)
307 cd00561 CobA_CobO_BtuR ATP:cor 46.6 1.8E+02 0.004 24.7 9.6 99 8-121 4-106 (159)
308 TIGR00379 cobB cobyrinic acid 46.3 87 0.0019 31.8 8.0 34 9-42 2-36 (449)
309 PRK13195 pyrrolidone-carboxyla 46.3 46 0.00099 30.0 5.3 27 6-32 1-29 (222)
310 KOG0780 Signal recognition par 46.0 28 0.00061 33.9 4.0 41 7-47 102-142 (483)
311 PRK07313 phosphopantothenoylcy 45.9 2E+02 0.0044 25.0 10.0 52 376-427 113-179 (182)
312 cd02032 Bchl_like This family 45.4 34 0.00075 31.7 4.7 38 7-44 1-38 (267)
313 COG0287 TyrA Prephenate dehydr 45.4 30 0.00065 32.5 4.2 41 5-50 2-42 (279)
314 PRK09219 xanthine phosphoribos 45.2 57 0.0012 28.6 5.7 44 96-139 36-81 (189)
315 PRK13982 bifunctional SbtC-lik 45.1 54 0.0012 33.4 6.2 40 6-45 256-307 (475)
316 PRK02649 ppnK inorganic polyph 45.0 31 0.00067 32.9 4.3 52 357-428 69-124 (305)
317 COG1484 DnaC DNA replication p 44.9 28 0.00061 32.2 3.9 46 6-51 105-150 (254)
318 cd01141 TroA_d Periplasmic bin 44.9 36 0.00079 29.4 4.5 35 104-138 63-99 (186)
319 TIGR00750 lao LAO/AO transport 44.7 1.9E+02 0.0041 27.4 9.7 41 6-46 34-74 (300)
320 COG0223 Fmt Methionyl-tRNA for 44.7 19 0.00041 34.2 2.7 37 6-47 1-37 (307)
321 PLN02929 NADH kinase 44.5 36 0.00077 32.3 4.5 63 358-428 66-137 (301)
322 PLN02256 arogenate dehydrogena 44.4 26 0.00056 33.4 3.7 36 4-44 34-69 (304)
323 TIGR00682 lpxK tetraacyldisacc 44.3 30 0.00066 33.1 4.1 35 12-46 36-70 (311)
324 PRK12921 2-dehydropantoate 2-r 44.3 23 0.0005 33.6 3.4 42 7-53 1-42 (305)
325 PRK13695 putative NTPase; Prov 44.2 2E+02 0.0044 24.5 10.0 32 7-38 1-32 (174)
326 PRK14098 glycogen synthase; Pr 43.7 40 0.00086 34.7 5.2 40 5-44 4-49 (489)
327 PRK11519 tyrosine kinase; Prov 43.6 3.5E+02 0.0075 29.5 12.5 42 6-47 525-568 (719)
328 cd03114 ArgK-like The function 43.6 1.9E+02 0.0041 24.0 10.7 36 9-44 2-37 (148)
329 TIGR01281 DPOR_bchL light-inde 43.5 39 0.00085 31.3 4.8 38 7-44 1-38 (268)
330 PRK13193 pyrrolidone-carboxyla 43.4 72 0.0016 28.5 6.1 26 7-32 1-28 (209)
331 TIGR03880 KaiC_arch_3 KaiC dom 43.4 32 0.00068 31.0 4.0 100 8-120 18-117 (224)
332 COG2987 HutU Urocanate hydrata 43.1 14 0.0003 36.4 1.6 112 262-381 385-508 (561)
333 PRK04328 hypothetical protein; 43.0 2.7E+02 0.0058 25.6 10.4 41 8-48 25-65 (249)
334 PRK00885 phosphoribosylamine-- 42.8 62 0.0013 32.5 6.3 29 7-40 1-30 (420)
335 PRK06904 replicative DNA helic 42.6 1.3E+02 0.0027 30.9 8.5 42 8-49 223-265 (472)
336 PRK02645 ppnK inorganic polyph 42.6 77 0.0017 30.2 6.6 29 354-384 57-89 (305)
337 PRK00005 fmt methionyl-tRNA fo 42.3 1.1E+02 0.0023 29.3 7.6 32 7-43 1-32 (309)
338 PRK03767 NAD(P)H:quinone oxido 41.9 46 0.00099 29.4 4.7 37 7-43 2-40 (200)
339 CHL00076 chlB photochlorophyll 41.5 40 0.00086 34.9 4.8 35 101-138 365-399 (513)
340 cd02034 CooC The accessory pro 41.2 61 0.0013 25.8 4.9 37 8-44 1-37 (116)
341 TIGR00877 purD phosphoribosyla 40.9 1E+02 0.0023 30.8 7.7 91 7-137 1-94 (423)
342 cd01124 KaiC KaiC is a circadi 40.8 28 0.00061 30.0 3.2 41 9-49 2-42 (187)
343 COG2085 Predicted dinucleotide 40.8 45 0.00098 29.7 4.3 35 6-45 1-35 (211)
344 COG0859 RfaF ADP-heptose:LPS h 40.8 1.4E+02 0.003 28.8 8.3 98 7-139 176-278 (334)
345 COG2327 WcaK Polysaccharide py 40.8 95 0.0021 30.5 6.9 77 349-437 280-357 (385)
346 COG1927 Mtd Coenzyme F420-depe 40.7 2.6E+02 0.0057 24.8 12.9 38 279-316 32-70 (277)
347 TIGR00416 sms DNA repair prote 40.7 76 0.0017 32.2 6.5 40 8-47 96-135 (454)
348 KOG0832 Mitochondrial/chloropl 40.3 14 0.00031 32.9 1.1 114 16-143 90-208 (251)
349 COG0503 Apt Adenine/guanine ph 40.2 75 0.0016 27.6 5.6 37 101-137 44-82 (179)
350 TIGR00345 arsA arsenite-activa 40.2 52 0.0011 31.0 5.0 24 24-47 3-26 (284)
351 TIGR00421 ubiX_pad polyprenyl 40.0 22 0.00047 31.0 2.2 42 8-50 1-42 (181)
352 PRK14075 pnk inorganic polypho 40.0 53 0.0011 30.4 4.9 51 358-428 43-94 (256)
353 cd01976 Nitrogenase_MoFe_alpha 39.9 33 0.00072 34.4 3.9 35 101-138 360-394 (421)
354 PF15092 UPF0728: Uncharacteri 39.8 99 0.0021 23.0 5.1 47 1-47 1-51 (88)
355 PRK08840 replicative DNA helic 39.8 1.5E+02 0.0033 30.2 8.6 41 9-49 220-261 (464)
356 PF03308 ArgK: ArgK protein; 39.7 3E+02 0.0064 25.6 9.4 113 6-139 29-152 (266)
357 PLN03064 alpha,alpha-trehalose 39.7 4.9E+02 0.011 29.3 12.8 105 344-465 446-562 (934)
358 PLN02935 Bifunctional NADH kin 39.6 48 0.001 33.8 4.8 52 357-428 263-318 (508)
359 PF03446 NAD_binding_2: NAD bi 39.4 36 0.00078 28.9 3.5 31 6-41 1-31 (163)
360 PF02571 CbiJ: Precorrin-6x re 39.4 87 0.0019 28.9 6.2 102 23-137 118-225 (249)
361 PRK05562 precorrin-2 dehydroge 39.1 3E+02 0.0064 24.9 9.7 155 270-448 20-180 (223)
362 PF05693 Glycogen_syn: Glycoge 39.1 81 0.0018 33.0 6.4 95 347-446 462-567 (633)
363 PRK00994 F420-dependent methyl 39.0 3E+02 0.0066 25.0 14.7 85 279-408 32-118 (277)
364 PRK03378 ppnK inorganic polyph 38.9 44 0.00095 31.7 4.2 53 354-428 63-119 (292)
365 PRK06522 2-dehydropantoate 2-r 38.8 36 0.00079 32.2 3.8 31 7-42 1-31 (304)
366 PRK13197 pyrrolidone-carboxyla 38.7 82 0.0018 28.3 5.8 27 6-32 1-29 (215)
367 cd03466 Nitrogenase_NifN_2 Nit 38.7 50 0.0011 33.3 4.9 35 100-137 362-396 (429)
368 COG3140 Uncharacterized protei 38.5 1.1E+02 0.0023 20.6 4.6 37 431-467 10-46 (60)
369 TIGR01380 glut_syn glutathione 38.2 39 0.00085 32.3 3.9 42 7-48 1-45 (312)
370 COG0205 PfkA 6-phosphofructoki 38.0 1.1E+02 0.0024 29.7 6.8 118 6-137 2-124 (347)
371 COG1748 LYS9 Saccharopine dehy 38.0 1.4E+02 0.0029 29.6 7.5 33 6-43 1-34 (389)
372 PRK13604 luxD acyl transferase 37.9 64 0.0014 30.7 5.1 37 5-41 35-71 (307)
373 COG0801 FolK 7,8-dihydro-6-hyd 37.8 69 0.0015 27.2 4.8 29 279-307 3-31 (160)
374 PRK02910 light-independent pro 37.6 52 0.0011 34.1 4.9 35 101-138 353-387 (519)
375 TIGR01286 nifK nitrogenase mol 37.5 50 0.0011 34.1 4.7 34 101-137 428-461 (515)
376 PRK12767 carbamoyl phosphate s 37.4 1.3E+02 0.0028 28.8 7.4 33 6-44 1-35 (326)
377 cd01981 Pchlide_reductase_B Pc 37.4 53 0.0011 33.1 4.9 36 101-139 361-396 (430)
378 TIGR01278 DPOR_BchB light-inde 37.3 49 0.0011 34.2 4.7 36 101-139 355-390 (511)
379 PRK06395 phosphoribosylamine-- 37.1 1.9E+02 0.0042 29.2 8.8 32 6-42 2-33 (435)
380 PF05690 ThiG: Thiazole biosyn 36.6 47 0.001 30.1 3.7 47 379-425 124-174 (247)
381 TIGR01470 cysG_Nterm siroheme 36.6 3.1E+02 0.0066 24.4 12.1 148 277-447 10-164 (205)
382 TIGR02237 recomb_radB DNA repa 36.5 1.7E+02 0.0036 25.8 7.6 37 8-44 14-50 (209)
383 PRK14619 NAD(P)H-dependent gly 36.5 47 0.001 31.7 4.1 35 5-44 3-37 (308)
384 PF01075 Glyco_transf_9: Glyco 36.3 80 0.0017 28.7 5.6 40 6-45 105-148 (247)
385 PF14336 DUF4392: Domain of un 36.2 22 0.00047 33.7 1.7 47 6-52 40-94 (291)
386 PRK03708 ppnK inorganic polyph 36.2 38 0.00081 31.8 3.3 54 356-432 57-113 (277)
387 PF10649 DUF2478: Protein of u 36.1 2.7E+02 0.0059 23.6 11.3 34 11-44 3-37 (159)
388 PRK03094 hypothetical protein; 36.1 34 0.00073 25.2 2.3 20 23-42 10-29 (80)
389 TIGR02113 coaC_strep phosphopa 36.0 36 0.00077 29.5 2.9 43 8-51 2-44 (177)
390 PRK08155 acetolactate synthase 35.9 72 0.0016 33.5 5.8 27 357-383 77-109 (564)
391 PF02056 Glyco_hydro_4: Family 35.7 3E+02 0.0065 24.0 9.2 121 18-145 39-174 (183)
392 PRK14076 pnk inorganic polypho 35.6 52 0.0011 34.5 4.6 52 357-428 349-404 (569)
393 PHA02754 hypothetical protein; 35.5 64 0.0014 21.8 3.3 27 420-449 5-31 (67)
394 PRK08229 2-dehydropantoate 2-r 35.5 27 0.00059 33.8 2.4 41 6-51 2-42 (341)
395 TIGR01744 XPRTase xanthine pho 35.4 98 0.0021 27.2 5.6 43 96-138 36-80 (191)
396 KOG3062 RNA polymerase II elon 35.3 77 0.0017 28.6 4.8 35 7-41 2-37 (281)
397 COG2022 ThiG Uncharacterized e 35.3 61 0.0013 29.2 4.2 46 380-425 132-181 (262)
398 TIGR01501 MthylAspMutase methy 35.2 58 0.0013 26.7 3.9 42 6-47 1-42 (134)
399 PRK06756 flavodoxin; Provision 35.2 70 0.0015 26.5 4.6 37 6-42 1-38 (148)
400 PRK13869 plasmid-partitioning 35.2 66 0.0014 32.1 5.1 40 5-44 119-160 (405)
401 PF05728 UPF0227: Uncharacteri 35.2 84 0.0018 27.5 5.2 40 100-139 47-89 (187)
402 TIGR00147 lipid kinase, YegS/R 35.0 1.3E+02 0.0028 28.4 6.9 27 358-384 59-91 (293)
403 PRK05114 hypothetical protein; 35.0 1.3E+02 0.0029 20.4 4.7 36 431-466 10-45 (59)
404 PRK05632 phosphate acetyltrans 34.9 3.7E+02 0.008 29.1 11.0 34 8-41 4-38 (684)
405 PF01993 MTD: methylene-5,6,7, 34.9 3.6E+02 0.0077 24.6 11.3 85 279-408 31-117 (276)
406 TIGR01007 eps_fam capsular exo 34.9 70 0.0015 28.2 4.8 39 7-45 17-57 (204)
407 cd00501 Peptidase_C15 Pyroglut 34.9 1.1E+02 0.0023 26.9 5.9 27 7-33 1-29 (194)
408 PRK12448 dihydroxy-acid dehydr 34.7 3.2E+02 0.0068 28.8 9.7 48 96-143 97-148 (615)
409 TIGR01162 purE phosphoribosyla 34.6 1.3E+02 0.0029 25.4 5.9 104 290-427 37-142 (156)
410 PLN02350 phosphogluconate dehy 34.5 38 0.00083 34.7 3.3 37 1-42 1-37 (493)
411 TIGR02700 flavo_MJ0208 archaeo 34.5 41 0.00089 30.7 3.2 44 9-52 2-47 (234)
412 PRK12595 bifunctional 3-deoxy- 34.5 4.2E+02 0.0092 26.0 10.3 125 285-427 124-250 (360)
413 PRK03501 ppnK inorganic polyph 34.4 62 0.0013 30.1 4.4 52 358-428 41-97 (264)
414 PF03853 YjeF_N: YjeF-related 34.4 83 0.0018 27.0 5.0 38 4-42 23-60 (169)
415 PF14626 RNase_Zc3h12a_2: Zc3h 34.3 52 0.0011 26.2 3.2 33 20-52 9-41 (122)
416 cd01980 Chlide_reductase_Y Chl 34.3 62 0.0013 32.5 4.8 33 103-138 343-375 (416)
417 cd00861 ProRS_anticodon_short 34.3 76 0.0016 23.7 4.3 36 6-41 1-38 (94)
418 PRK01185 ppnK inorganic polyph 34.3 57 0.0012 30.5 4.1 51 358-428 54-105 (271)
419 PRK05579 bifunctional phosphop 34.1 46 0.00099 33.1 3.7 46 5-51 5-50 (399)
420 TIGR00730 conserved hypothetic 34.1 3.1E+02 0.0068 23.7 8.6 118 265-399 22-152 (178)
421 PRK08818 prephenate dehydrogen 34.0 4.3E+02 0.0093 26.1 10.3 32 6-42 4-37 (370)
422 PRK13236 nitrogenase reductase 33.9 84 0.0018 29.8 5.4 45 1-45 1-45 (296)
423 PRK08125 bifunctional UDP-gluc 33.9 1.9E+02 0.004 31.1 8.6 40 101-140 66-106 (660)
424 PF00318 Ribosomal_S2: Ribosom 33.8 1.6E+02 0.0034 26.4 6.8 35 110-144 143-179 (211)
425 cd07038 TPP_PYR_PDC_IPDC_like 33.7 1.4E+02 0.0031 25.2 6.3 28 357-384 60-93 (162)
426 cd01715 ETF_alpha The electron 33.4 93 0.002 26.5 5.1 43 97-139 70-115 (168)
427 cd01974 Nitrogenase_MoFe_beta 33.2 73 0.0016 32.2 5.1 34 102-138 369-402 (435)
428 PF01372 Melittin: Melittin; 33.2 7.4 0.00016 21.1 -1.1 17 365-381 1-17 (26)
429 CHL00162 thiG thiamin biosynth 33.2 71 0.0015 29.3 4.3 44 380-423 139-186 (267)
430 COG2086 FixA Electron transfer 32.8 90 0.0019 29.0 5.1 41 99-139 100-146 (260)
431 PF04244 DPRP: Deoxyribodipyri 32.7 46 0.00099 30.1 3.1 26 19-44 47-72 (224)
432 PLN02695 GDP-D-mannose-3',5'-e 32.6 74 0.0016 31.2 5.0 36 4-43 19-54 (370)
433 PRK06276 acetolactate synthase 32.5 1.1E+02 0.0023 32.4 6.4 27 357-383 64-96 (586)
434 PRK00994 F420-dependent methyl 32.4 89 0.0019 28.3 4.7 42 101-142 51-98 (277)
435 PLN02293 adenine phosphoribosy 32.4 1.3E+02 0.0029 26.3 5.9 41 97-137 49-91 (187)
436 cd01840 SGNH_hydrolase_yrhL_li 32.4 1.2E+02 0.0025 25.2 5.5 38 276-314 50-87 (150)
437 PRK00771 signal recognition pa 32.3 1E+02 0.0022 31.2 5.8 42 6-47 95-136 (437)
438 PF03641 Lysine_decarbox: Poss 32.2 1.5E+02 0.0033 24.2 6.0 79 297-383 3-91 (133)
439 COG4394 Uncharacterized protei 32.0 4E+02 0.0086 25.2 8.9 39 339-380 239-280 (370)
440 TIGR00064 ftsY signal recognit 32.0 1.1E+02 0.0024 28.6 5.7 39 8-46 74-112 (272)
441 PF09001 DUF1890: Domain of un 32.0 54 0.0012 26.8 3.1 33 18-50 11-43 (139)
442 PF06415 iPGM_N: BPG-independe 31.9 1.2E+02 0.0026 27.4 5.6 33 4-36 27-61 (223)
443 COG3640 CooC CO dehydrogenase 31.9 1.1E+02 0.0024 27.9 5.3 47 7-53 1-48 (255)
444 PF03701 UPF0181: Uncharacteri 31.6 1.6E+02 0.0034 19.5 4.5 36 431-466 10-45 (51)
445 cd06559 Endonuclease_V Endonuc 31.6 55 0.0012 29.2 3.4 37 102-138 83-128 (208)
446 PF03808 Glyco_tran_WecB: Glyc 31.6 3.3E+02 0.0072 23.3 10.4 86 216-315 50-135 (172)
447 CHL00067 rps2 ribosomal protei 31.5 49 0.0011 30.1 3.2 34 110-143 161-196 (230)
448 TIGR00521 coaBC_dfp phosphopan 31.4 40 0.00087 33.4 2.8 45 6-51 3-47 (390)
449 PRK08558 adenine phosphoribosy 31.3 1.1E+02 0.0024 28.0 5.5 39 99-137 100-140 (238)
450 PRK09739 hypothetical protein; 31.2 1.1E+02 0.0024 26.9 5.4 36 6-41 3-41 (199)
451 PF01497 Peripla_BP_2: Peripla 31.2 61 0.0013 29.1 3.9 38 104-141 54-93 (238)
452 cd01983 Fer4_NifH The Fer4_Nif 31.1 1.1E+02 0.0024 22.4 4.8 33 9-41 2-34 (99)
453 cd02065 B12-binding_like B12 b 31.1 77 0.0017 25.1 4.1 35 9-43 2-36 (125)
454 PF00448 SRP54: SRP54-type pro 31.1 94 0.002 27.4 4.9 39 8-46 3-41 (196)
455 COG0240 GpsA Glycerol-3-phosph 31.1 63 0.0014 31.0 3.9 34 6-44 1-34 (329)
456 PRK00039 ruvC Holliday junctio 31.1 1.4E+02 0.0029 25.6 5.6 45 95-139 46-105 (164)
457 PF03698 UPF0180: Uncharacteri 31.1 44 0.00096 24.6 2.3 22 23-44 10-31 (80)
458 PRK06731 flhF flagellar biosyn 31.0 3.4E+02 0.0073 25.4 8.7 40 7-46 76-115 (270)
459 PRK11914 diacylglycerol kinase 30.9 1.1E+02 0.0024 29.1 5.7 27 358-384 66-96 (306)
460 PRK13810 orotate phosphoribosy 30.9 1.3E+02 0.0028 26.3 5.6 39 99-137 62-102 (187)
461 PF07015 VirC1: VirC1 protein; 30.8 1E+02 0.0022 28.0 5.0 41 9-49 4-45 (231)
462 PF02635 DrsE: DsrE/DsrF-like 30.7 1.5E+02 0.0032 23.1 5.7 45 7-51 1-51 (122)
463 cd01147 HemV-2 Metal binding p 30.6 78 0.0017 29.0 4.6 36 104-139 68-106 (262)
464 PF10835 DUF2573: Protein of u 30.6 1.8E+02 0.0038 21.2 5.0 53 416-468 9-75 (82)
465 COG0569 TrkA K+ transport syst 30.1 63 0.0014 29.2 3.7 35 7-46 1-35 (225)
466 PLN00016 RNA-binding protein; 30.0 64 0.0014 31.7 4.1 37 6-44 52-90 (378)
467 PRK06270 homoserine dehydrogen 30.0 2.3E+02 0.005 27.5 7.8 59 347-405 80-150 (341)
468 PF00070 Pyr_redox: Pyridine n 30.0 81 0.0018 22.8 3.7 26 21-46 9-34 (80)
469 PF02826 2-Hacid_dh_C: D-isome 29.8 39 0.00084 29.2 2.2 106 276-423 36-142 (178)
470 PRK04761 ppnK inorganic polyph 29.8 48 0.001 30.4 2.8 51 358-427 27-81 (246)
471 TIGR03877 thermo_KaiC_1 KaiC d 29.8 1.2E+02 0.0025 27.7 5.4 41 8-48 23-63 (237)
472 PRK06456 acetolactate synthase 29.7 3.1E+02 0.0068 28.8 9.3 27 357-383 69-101 (572)
473 COG2084 MmsB 3-hydroxyisobutyr 29.7 72 0.0016 30.0 4.0 33 7-44 1-33 (286)
474 PRK05579 bifunctional phosphop 29.5 4.7E+02 0.01 26.1 9.9 140 277-427 7-182 (399)
475 PF06564 YhjQ: YhjQ protein; 29.5 91 0.002 28.6 4.5 37 7-43 1-39 (243)
476 TIGR02482 PFKA_ATP 6-phosphofr 29.4 48 0.001 31.5 2.9 36 351-386 86-125 (301)
477 PF05225 HTH_psq: helix-turn-h 29.4 84 0.0018 20.1 3.1 26 414-441 1-26 (45)
478 PRK15469 ghrA bifunctional gly 29.4 3.5E+02 0.0075 25.9 8.8 103 277-423 137-241 (312)
479 COG2159 Predicted metal-depend 29.3 2.5E+02 0.0054 26.6 7.7 108 242-372 98-210 (293)
480 PF13450 NAD_binding_8: NAD(P) 29.2 69 0.0015 22.6 3.0 22 24-45 9-30 (68)
481 cd03784 GT1_Gtf_like This fami 29.1 2.2E+02 0.0048 28.0 7.8 35 279-315 3-37 (401)
482 PLN02735 carbamoyl-phosphate s 29.1 4E+02 0.0086 30.7 10.4 39 6-44 23-67 (1102)
483 PF01695 IstB_IS21: IstB-like 29.1 1.1E+02 0.0023 26.6 4.8 45 6-50 47-91 (178)
484 PRK08410 2-hydroxyacid dehydro 29.0 2.7E+02 0.0058 26.7 7.9 101 276-424 145-248 (311)
485 cd07037 TPP_PYR_MenD Pyrimidin 28.9 50 0.0011 28.2 2.6 26 358-383 62-93 (162)
486 PRK06932 glycerate dehydrogena 28.9 2.3E+02 0.0049 27.2 7.4 101 276-423 147-248 (314)
487 cd01143 YvrC Periplasmic bindi 28.8 94 0.002 26.9 4.6 35 103-137 53-88 (195)
488 PRK04020 rps2P 30S ribosomal p 28.7 74 0.0016 28.3 3.7 34 109-142 113-148 (204)
489 PF10657 RC-P840_PscD: Photosy 28.7 73 0.0016 25.3 3.2 42 5-46 45-86 (144)
490 PRK00421 murC UDP-N-acetylmura 28.6 80 0.0017 32.1 4.6 39 1-43 2-40 (461)
491 TIGR00173 menD 2-succinyl-5-en 28.4 2.2E+02 0.0047 28.7 7.6 26 357-382 64-95 (432)
492 TIGR01743 purR_Bsub pur operon 28.4 1.3E+02 0.0027 28.2 5.3 39 100-138 118-158 (268)
493 COG1553 DsrE Uncharacterized c 28.4 1.5E+02 0.0033 23.9 5.0 39 7-45 1-43 (126)
494 PF02776 TPP_enzyme_N: Thiamin 28.3 1.3E+02 0.0028 25.7 5.2 27 358-384 66-98 (172)
495 COG1052 LdhA Lactate dehydroge 28.3 2.3E+02 0.005 27.3 7.3 106 277-424 147-252 (324)
496 PRK14478 nitrogenase molybdenu 28.2 72 0.0016 32.7 4.1 34 101-137 384-417 (475)
497 PRK10490 sensor protein KdpD; 28.2 73 0.0016 35.6 4.4 38 6-43 24-61 (895)
498 PRK09213 pur operon repressor; 28.1 1.4E+02 0.0031 27.9 5.6 38 101-138 121-160 (271)
499 KOG0069 Glyoxylate/hydroxypyru 28.0 4.5E+02 0.0098 25.4 9.1 105 276-423 162-268 (336)
500 PF03721 UDPG_MGDP_dh_N: UDP-g 28.0 93 0.002 27.2 4.2 34 7-45 1-34 (185)
No 1
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.2e-68 Score=529.70 Aligned_cols=465 Identities=51% Similarity=0.929 Sum_probs=354.0
Q ss_pred CCCCCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCcccc
Q 011765 1 MADNSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEAT 80 (478)
Q Consensus 1 ~~~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~ 80 (478)
|....+.||+++|+|++||++|++.||+.|+.||..|||++++.+...+........+.++++.+|+|..++++.+....
T Consensus 1 ~~~~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~~~~~~ 80 (472)
T PLN02670 1 MKREEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPSSAESS 80 (472)
T ss_pred CCCCCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCCCcccc
Confidence 66677889999999999999999999999999999999999998765554321111234999999988777887654433
Q ss_pred CCCChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHhhccccccccccCC
Q 011765 81 IDLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFGPSSVLINDSGD 160 (478)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (478)
.+........+......+.+.+++++++.+++|||+|.+.+|+..+|+++|||.+.++++++..+..+.++..+...+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~~~ 160 (472)
T PLN02670 81 TDVPYTKQQLLKKAFDLLEPPLTTFLETSKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGGDL 160 (472)
T ss_pred cccchhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhcccC
Confidence 33322222455556666788888988888899999999999999999999999999999999988876644322221111
Q ss_pred CCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHhhcCC
Q 011765 161 HLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQLHRK 240 (478)
Q Consensus 161 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~~~ 240 (478)
+.. .......+.++|.+..+.++..+++++..........+....+......+++++++|||++||+..++.++..+++
T Consensus 161 ~~~-~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~~~~~ 239 (472)
T PLN02670 161 RST-AEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLSDLYRK 239 (472)
T ss_pred CCc-cccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHHHhhCC
Confidence 110 1111112223343333234444444433211111111222223333456789999999999999999999886666
Q ss_pred CeeeeccCCCCCCCCCCCC--CCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCC
Q 011765 241 PVIPVGQLPTTTGDGDSDA--ETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLG 318 (478)
Q Consensus 241 ~~~~vGp~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~ 318 (478)
+++.|||+........... ....++++.+||+.++++++|||||||....+.+++.+++.+|+.++.+|||+++...+
T Consensus 240 ~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r~~~~ 319 (472)
T PLN02670 240 PIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLRNEPG 319 (472)
T ss_pred CeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcc
Confidence 7999999975311100000 01235789999999988899999999999999999999999999999999999985322
Q ss_pred CCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhhHHHHHhhc
Q 011765 319 QADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEK 398 (478)
Q Consensus 319 ~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~ 398 (478)
...+....+|++|.++.+.+++++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||++++++
T Consensus 320 ~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~ 399 (472)
T PLN02670 320 TTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGK 399 (472)
T ss_pred cccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccHHHHHHHHHc
Confidence 10111236899999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHhcc
Q 011765 399 QIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLKNHR 466 (478)
Q Consensus 399 g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 466 (478)
|+|+.++..++++.++.++|+++|+++|.+++.++||+||+++++.+++.++..++++.|++++.+++
T Consensus 400 g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 467 (472)
T PLN02670 400 KLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLRENR 467 (472)
T ss_pred CeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHhc
Confidence 99999975432345899999999999998544568999999999999999999999999999998877
No 2
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1.4e-64 Score=499.78 Aligned_cols=433 Identities=28% Similarity=0.510 Sum_probs=334.8
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCCh
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPY 85 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~ 85 (478)
++||+++|+|++||++|++.||+.|+++||+|||++++.+...+...+ .....+.+..++++..++++.+.....+...
T Consensus 4 ~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~-a~~~~i~~~~l~~p~~dgLp~g~~~~~~l~~ 82 (442)
T PLN02208 4 KFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHN-LFPDSIVFHPLTIPPVNGLPAGAETTSDIPI 82 (442)
T ss_pred CCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhccc-CCCCceEEEEeCCCCccCCCCCcccccchhH
Confidence 689999999999999999999999999999999999998877665443 1123477888776544567666443223323
Q ss_pred hHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHhhccccccccccCCCCCCC
Q 011765 86 DEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFGPSSVLINDSGDHLKTP 165 (478)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (478)
.....+......+.+.+++++++.+|||||+| ++.|+..+|+++|||++.+|+++++.+. +.+... +
T Consensus 83 ~l~~~~~~~~~~~~~~l~~~L~~~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~--~--------- 149 (442)
T PLN02208 83 SMDNLLSEALDLTRDQVEAAVRALRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG--G--------- 149 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc--c---------
Confidence 33345555666788889999988899999999 6789999999999999999999998765 333210 0
Q ss_pred CcccCCCcccccccccccchhhhhhhhhhhcCCcccch-hhhhhhccccCCcEEEEcCcCccChHHHHHHHhhcCCCeee
Q 011765 166 EDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVS-HGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQLHRKPVIP 244 (478)
Q Consensus 166 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~~~~~~~ 244 (478)
....+.+++|.. ...++..+++.+ ......+. ....+.....+++++++|||++||+..++++...+.++++.
T Consensus 150 -~~~~~~pglp~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~ 223 (442)
T PLN02208 150 -KLGVPPPGYPSS-KVLFRENDAHAL----ATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLL 223 (442)
T ss_pred -ccCCCCCCCCCc-ccccCHHHcCcc----cccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEE
Confidence 000112223321 111222222221 01111121 12223234567899999999999999999998877788999
Q ss_pred eccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCC
Q 011765 245 VGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEP 324 (478)
Q Consensus 245 vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~ 324 (478)
|||+....... ...++++.+|||.++++++|||||||...++.+++.+++.+++.++.+|+|+++...+. .+..
T Consensus 224 vGpl~~~~~~~-----~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~-~~~~ 297 (442)
T PLN02208 224 TGPMFPEPDTS-----KPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGS-STVQ 297 (442)
T ss_pred EeecccCcCCC-----CCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCcc-cchh
Confidence 99998543211 23467899999999888999999999998899999999999999999999999854211 0023
Q ss_pred CCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhhHHHHHhh-cCeEEE
Q 011765 325 IELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEE-KQIVEL 403 (478)
Q Consensus 325 ~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~-~g~G~~ 403 (478)
..+|++|+++.+.+|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++++ +|+|+.
T Consensus 298 ~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~ 377 (442)
T PLN02208 298 EGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVE 377 (442)
T ss_pred hhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEE
Confidence 4689999999999999999999999999999999999999999999999999999999999999999998776 799999
Q ss_pred eeccCCCCcccHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHhc
Q 011765 404 IPRDEGDGFFTRNSVAESLRLVLVE--EKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLKNH 465 (478)
Q Consensus 404 l~~~~~~~~~~~~~l~~~i~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (478)
++..+ +|.++.++|+++|++++++ |+.+.+|++++++++.+.+.|++.++++.+++.++++
T Consensus 378 ~~~~~-~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~~~gsS~~~l~~~v~~l~~~ 440 (442)
T PLN02208 378 VSREK-TGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILVSPGLLTGYVDKFVEELQEY 440 (442)
T ss_pred ecccc-CCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 97643 4568999999999999974 2356799999999999998888999999999988654
No 3
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=4.8e-64 Score=492.94 Aligned_cols=443 Identities=28% Similarity=0.512 Sum_probs=336.6
Q ss_pred CCCCCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCcccc
Q 011765 1 MADNSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEAT 80 (478)
Q Consensus 1 ~~~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~ 80 (478)
|+.+ ++||+++|++++||++|++.||+.|+.+|+.|||++++.+...+.... ....++.+..+++|..++++.+.+..
T Consensus 1 ~~~~-~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~-~~~~~~~v~~~~~p~~~glp~g~e~~ 78 (453)
T PLN02764 1 MGGL-KFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLN-LFPHNIVFRSVTVPHVDGLPVGTETV 78 (453)
T ss_pred CCCC-CcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccc-cCCCCceEEEEECCCcCCCCCccccc
Confidence 5554 689999999999999999999999999999999999998765444321 01113445555544445777665444
Q ss_pred CCCChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHhhccccccccccCC
Q 011765 81 IDLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFGPSSVLINDSGD 160 (478)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (478)
.+...+....+......+.+.+.+++++.+|||||+| +.+|+..+|+++|||.+.++++++..+..+..+. +.
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~~iV~D-~~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~~~-----~~- 151 (453)
T PLN02764 79 SEIPVTSADLLMSAMDLTRDQVEVVVRAVEPDLIFFD-FAHWIPEVARDFGLKTVKYVVVSASTIASMLVPG-----GE- 151 (453)
T ss_pred ccCChhHHHHHHHHHHHhHHHHHHHHHhCCCCEEEEC-CchhHHHHHHHhCCCEEEEEcHHHHHHHHHhccc-----cc-
Confidence 3444344455666666778889999988889999999 4889999999999999999999999888765321 00
Q ss_pred CCCCCCcccCCCcccccccccccchhhhhhhhhhhc--CCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHhhc
Q 011765 161 HLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILI--SDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQLH 238 (478)
Q Consensus 161 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~ 238 (478)
.+.+.+++|.. ...++...+..+..... ..........++......++++++|||++||+..++++....
T Consensus 152 -------~~~~~pglp~~-~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~ 223 (453)
T PLN02764 152 -------LGVPPPGYPSS-KVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKHC 223 (453)
T ss_pred -------CCCCCCCCCCC-cccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhhc
Confidence 00111223311 11122222222111000 000111233334345667899999999999999999987755
Q ss_pred CCCeeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCC
Q 011765 239 RKPVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLG 318 (478)
Q Consensus 239 ~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~ 318 (478)
+++++.|||+....... ....+++.+|||.++++++|||||||....+.+++.+++.+|+.++.+|+|+++....
T Consensus 224 ~~~v~~VGPL~~~~~~~-----~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~ 298 (453)
T PLN02764 224 RKKVLLTGPVFPEPDKT-----RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRG 298 (453)
T ss_pred CCcEEEeccCccCcccc-----ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 56799999997532110 1124679999999999999999999999899999999999999999999999985422
Q ss_pred CCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhhHHHHHh-h
Q 011765 319 QADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLE-E 397 (478)
Q Consensus 319 ~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~-~ 397 (478)
.. +....+|++|+++.+.+++++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||++++ .
T Consensus 299 ~~-~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~ 377 (453)
T PLN02764 299 SS-TIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDE 377 (453)
T ss_pred Cc-chhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHH
Confidence 10 123469999999999999999999999999999999999999999999999999999999999999999999996 4
Q ss_pred cCeEEEeeccCCCCcccHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHhccc
Q 011765 398 KQIVELIPRDEGDGFFTRNSVAESLRLVLVE--EKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLKNHRC 467 (478)
Q Consensus 398 ~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (478)
.|+|+.+...+ .+.++.++|+++|+++|++ ++.+.+|++++++++.+++.|++.++++.+++.+.++.+
T Consensus 378 ~g~gv~~~~~~-~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~~GSS~~~l~~lv~~~~~~~~ 448 (453)
T PLN02764 378 LKVSVEVAREE-TGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLASPGLLTGYVDNFIESLQDLVS 448 (453)
T ss_pred hceEEEecccc-CCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc
Confidence 79999885321 1238999999999999974 335679999999999999999999999999999987654
No 4
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=1e-63 Score=494.07 Aligned_cols=439 Identities=31% Similarity=0.553 Sum_probs=335.9
Q ss_pred CCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCC
Q 011765 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDL 83 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~ 83 (478)
+++.||+++|+|++||++|++.||+.|+++|++|||++++.+...+...+ ...+.+.|..+++|..++++.+.....+.
T Consensus 2 ~~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~-~~~~~i~~~~i~lP~~dGLP~g~e~~~~l 80 (446)
T PLN00414 2 GSKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLN-LFPDSIVFEPLTLPPVDGLPFGAETASDL 80 (446)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccc-cCCCceEEEEecCCCcCCCCCcccccccc
Confidence 34789999999999999999999999999999999999998766554432 11234888888777666787765433333
Q ss_pred ChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHhhccccccccccCCCCC
Q 011765 84 PYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFGPSSVLINDSGDHLK 163 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (478)
.......+......+.+.+.++++..+|||||+|. ++|+..+|+++|||++.|+++++..+..+.++. ...
T Consensus 81 ~~~~~~~~~~a~~~l~~~l~~~L~~~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~--~~~------ 151 (446)
T PLN00414 81 PNSTKKPIFDAMDLLRDQIEAKVRALKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPR--AEL------ 151 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcH--hhc------
Confidence 33334455666667788888888888899999994 889999999999999999999999888776642 000
Q ss_pred CCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHhhcCCCee
Q 011765 164 TPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQLHRKPVI 243 (478)
Q Consensus 164 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~~~~~~ 243 (478)
..++..+|... +.++..... +...+.. ......+......+++++++|||++||+..++.++..++++++
T Consensus 152 -----~~~~pg~p~~~-~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v~ 221 (446)
T PLN00414 152 -----GFPPPDYPLSK-VALRGHDAN-VCSLFAN---SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQRKVL 221 (446)
T ss_pred -----CCCCCCCCCCc-CcCchhhcc-cchhhcc---cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcCCCeE
Confidence 01112222110 001111100 0000110 1112223334566789999999999999999998886666799
Q ss_pred eeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCC
Q 011765 244 PVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTE 323 (478)
Q Consensus 244 ~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~ 323 (478)
.|||+........ .....+++.+|||.++++++|||||||....+.+++.+++.+|+.++.+|+|++...... .+.
T Consensus 222 ~VGPl~~~~~~~~---~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~-~~~ 297 (446)
T PLN00414 222 LTGPMLPEPQNKS---GKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGS-STV 297 (446)
T ss_pred EEcccCCCccccc---CcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCc-ccc
Confidence 9999974321100 012235699999999999999999999999999999999999999999999999863221 002
Q ss_pred CCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhhHHHHHh-hcCeEE
Q 011765 324 PIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLE-EKQIVE 402 (478)
Q Consensus 324 ~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~-~~g~G~ 402 (478)
...+|++|+++.+.+++++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||++++ +.|+|+
T Consensus 298 ~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~ 377 (446)
T PLN00414 298 QEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSV 377 (446)
T ss_pred hhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEE
Confidence 3468999999999999999999999999999999999999999999999999999999999999999999996 579999
Q ss_pred EeeccCCCCcccHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHhccc
Q 011765 403 LIPRDEGDGFFTRNSVAESLRLVLVE--EKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLKNHRC 467 (478)
Q Consensus 403 ~l~~~~~~~~~~~~~l~~~i~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (478)
.+...+ ++.+++++|+++|+++|.+ ++.+++|++++++++.+.+.+|+...++.+++.+++.+.
T Consensus 378 ~~~~~~-~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~~gg~ss~l~~~v~~~~~~~~ 443 (446)
T PLN00414 378 KVQRED-SGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVSPGLLSGYADKFVEALENEVN 443 (446)
T ss_pred Eecccc-CCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhcc
Confidence 996432 3458999999999999973 234679999999999998888855668889988866544
No 5
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=6.3e-63 Score=492.57 Aligned_cols=455 Identities=26% Similarity=0.397 Sum_probs=337.8
Q ss_pred CCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCC
Q 011765 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDL 83 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~ 83 (478)
.+++||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+.....+ .+.++++.+|+|...+++++.....+.
T Consensus 7 ~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~-~~~i~~~~lp~P~~~~lPdG~~~~~~~ 85 (477)
T PLN02863 7 PAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSK-HPSIETLVLPFPSHPSIPSGVENVKDL 85 (477)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhccc-CCCeeEEeCCCCCcCCCCCCCcChhhc
Confidence 4589999999999999999999999999999999999999887655432211 135889899887767788776554444
Q ss_pred ChhHHHHHHHHHhhhhHHHHHHHhh--cCCCEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHhhccccccccccCCC
Q 011765 84 PYDEVKYLKQSFDCLEEPMAKLLQS--LAPDWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFGPSSVLINDSGDH 161 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~ll~~--~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (478)
..+....+......+.+.+.+++++ .+|+|||+|.+.+|+..+|+++|||++.||+++++.+..+++.... .....
T Consensus 86 ~~~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~--~~~~~ 163 (477)
T PLN02863 86 PPSGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWRE--MPTKI 163 (477)
T ss_pred chhhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhc--ccccc
Confidence 4344455666666677777777776 3579999999999999999999999999999999999887765311 00000
Q ss_pred CCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHhhcC-C
Q 011765 162 LKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQLHR-K 240 (478)
Q Consensus 162 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~~-~ 240 (478)
............++|+.. .++...++.+.+.............+.......++++++|||++||+..++.++..+. +
T Consensus 164 ~~~~~~~~~~~~~iPg~~--~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~ 241 (477)
T PLN02863 164 NPDDQNEILSFSKIPNCP--KYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKELGHD 241 (477)
T ss_pred cccccccccccCCCCCCC--CcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhhcCCC
Confidence 000000000111233211 1222222222211001111112222222234567889999999999999999988765 5
Q ss_pred CeeeeccCCCCCCCC---CCCCC--CCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEec
Q 011765 241 PVIPVGQLPTTTGDG---DSDAE--TDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKK 315 (478)
Q Consensus 241 ~~~~vGp~~~~~~~~---~~~~~--~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 315 (478)
+++.|||+....... ..... ....+++.+||+.++++++|||||||....+.+++.+++.+|+.++.+|||+++.
T Consensus 242 ~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~ 321 (477)
T PLN02863 242 RVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKE 321 (477)
T ss_pred CeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECC
Confidence 799999997432110 00000 1134679999999988999999999999899999999999999999999999975
Q ss_pred CCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhhHHHHH
Q 011765 316 RLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAKLL 395 (478)
Q Consensus 316 ~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v 395 (478)
.... ......+|+++.++.+.+|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++
T Consensus 322 ~~~~-~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v 400 (477)
T PLN02863 322 PVNE-ESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVNASLL 400 (477)
T ss_pred Cccc-ccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchhhHHHH
Confidence 3211 002246899999888888999999999999999999999999999999999999999999999999999999997
Q ss_pred h-hcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHH----hcccCChHHHHHHHHHHHHhccc
Q 011765 396 E-EKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGL----FGDKGRHDRYVDNFLNYLKNHRC 467 (478)
Q Consensus 396 ~-~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~ 467 (478)
. +.|+|+.+.... .+.++.+++.++|++++.+ +++||+||+++++. +.++|++.++++.+++.+.++.-
T Consensus 401 ~~~~gvG~~~~~~~-~~~~~~~~v~~~v~~~m~~--~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~~~~ 474 (477)
T PLN02863 401 VDELKVAVRVCEGA-DTVPDSDELARVFMESVSE--NQVERERAKELRRAALDAIKERGSSVKDLDGFVKHVVELGL 474 (477)
T ss_pred HHhhceeEEeccCC-CCCcCHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHhcc
Confidence 6 569999995422 2347999999999999942 78999999999998 45778899999999999976543
No 6
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=6.6e-62 Score=481.91 Aligned_cols=437 Identities=25% Similarity=0.362 Sum_probs=317.1
Q ss_pred CCC-CCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCC-cc
Q 011765 1 MAD-NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLREN-AE 78 (478)
Q Consensus 1 ~~~-~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~-~~ 78 (478)
|.. +.+.||+++|++++||++|++.||+.|+.+|+.|||++++.+..... ....++.+..+| ++++++ ..
T Consensus 1 ~~~~~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~~----~~~~~i~~~~ip----~glp~~~~~ 72 (451)
T PLN02410 1 MEEKPARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSPS----DDFTDFQFVTIP----ESLPESDFK 72 (451)
T ss_pred CCcCCCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccccc----cCCCCeEEEeCC----CCCCccccc
Confidence 555 45689999999999999999999999999999999999997642111 111358899988 566653 22
Q ss_pred ccCCCChhHHHHHHHHHhhhhHHHHHHHhhc------CCCEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHhhcccc
Q 011765 79 ATIDLPYDEVKYLKQSFDCLEEPMAKLLQSL------APDWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFGPSS 152 (478)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~------~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~ 152 (478)
.. ....++......+.+.+.+++++. +++|||+|.+.+|+..+|+++|||.+.+++++++.+..+.++.
T Consensus 73 ~~-----~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~ 147 (451)
T PLN02410 73 NL-----GPIEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFD 147 (451)
T ss_pred cc-----CHHHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHH
Confidence 11 112333333334455555555442 4699999999999999999999999999999999887766543
Q ss_pred ccccccCCCCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHH
Q 011765 153 VLINDSGDHLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLK 232 (478)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~ 232 (478)
.+...+...+..... .+....+|... .++...++.... .............. ...+++++++|||++||++.++
T Consensus 148 ~~~~~~~~~~~~~~~-~~~~~~iPg~~--~~~~~dlp~~~~--~~~~~~~~~~~~~~-~~~~~~~vlvNTf~eLE~~~~~ 221 (451)
T PLN02410 148 KLYANNVLAPLKEPK-GQQNELVPEFH--PLRCKDFPVSHW--ASLESIMELYRNTV-DKRTASSVIINTASCLESSSLS 221 (451)
T ss_pred HHHhccCCCCccccc-cCccccCCCCC--CCChHHCcchhc--CCcHHHHHHHHHHh-hcccCCEEEEeChHHhhHHHHH
Confidence 222111100100000 00011222211 011111111100 00001111111111 3467899999999999999999
Q ss_pred HHHhhcCCCeeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEE
Q 011765 233 LLEQLHRKPVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWV 312 (478)
Q Consensus 233 ~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~ 312 (478)
+++...++++++|||+......... .....+++.+||+.++++++|||||||....+.+++.+++.+|+.++.+|+|+
T Consensus 222 ~l~~~~~~~v~~vGpl~~~~~~~~~--~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv 299 (451)
T PLN02410 222 RLQQQLQIPVYPIGPLHLVASAPTS--LLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWV 299 (451)
T ss_pred HHHhccCCCEEEecccccccCCCcc--ccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEE
Confidence 9988777789999999754221100 01223568999999988999999999999999999999999999999999999
Q ss_pred EecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhhHH
Q 011765 313 LKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNA 392 (478)
Q Consensus 313 ~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na 392 (478)
++.......+....+|++|+++...+ .++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||
T Consensus 300 ~r~~~~~~~~~~~~lp~~f~er~~~~-g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na 378 (451)
T PLN02410 300 IRPGSVRGSEWIESLPKEFSKIISGR-GYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNA 378 (451)
T ss_pred EccCcccccchhhcCChhHHHhccCC-eEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHH
Confidence 98432100001234899999988654 46669999999999999999999999999999999999999999999999999
Q ss_pred HHHhhc-CeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhc----ccCChHHHHHHHHHHHHh
Q 011765 393 KLLEEK-QIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFG----DKGRHDRYVDNFLNYLKN 464 (478)
Q Consensus 393 ~~v~~~-g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~i~~~~~~ 464 (478)
+++++. |+|+.+. .. +++++|+++|+++|.++++++||+++++|++.++ ++|++.++++.+++.++.
T Consensus 379 ~~~~~~~~~G~~~~-~~----~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 379 RYLECVWKIGIQVE-GD----LDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred HHHHHHhCeeEEeC-Cc----ccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 999887 9999997 34 8999999999999985556789999999999976 667789999999998764
No 7
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.1e-61 Score=477.88 Aligned_cols=422 Identities=24% Similarity=0.384 Sum_probs=317.2
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCC-ccccCCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLREN-AEATIDLP 84 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~-~~~~~~~~ 84 (478)
+.||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+... ..+.+.++.+| ++++++ .... +
T Consensus 5 ~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~---~~~~i~~~~ip----dglp~~~~~~~-~-- 74 (449)
T PLN02173 5 RGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD---PSSPISIATIS----DGYDQGGFSSA-G-- 74 (449)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC---CCCCEEEEEcC----CCCCCcccccc-c--
Confidence 57999999999999999999999999999999999999876544321 12359999998 677653 2221 1
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHhhc----CC-CEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHhhccccccccccC
Q 011765 85 YDEVKYLKQSFDCLEEPMAKLLQSL----AP-DWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFGPSSVLINDSG 159 (478)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~ll~~~----~p-D~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (478)
....++......+.+.+.+++++. +| ||||+|.+.+|+..+|+++|||.+.+++++++.+..+++.. + ..
T Consensus 75 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~-~-~~-- 149 (449)
T PLN02173 75 -SVPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSY-I-NN-- 149 (449)
T ss_pred -CHHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHH-h-cc--
Confidence 222445545445667777777653 56 99999999999999999999999999999888876655432 1 00
Q ss_pred CCCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHhhcC
Q 011765 160 DHLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQLHR 239 (478)
Q Consensus 160 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~~ 239 (478)
.....+.+++|. ++...++.+..........+...........+++++++|||++||++.++.++.. +
T Consensus 150 ------~~~~~~~pg~p~-----l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~-~ 217 (449)
T PLN02173 150 ------GSLTLPIKDLPL-----LELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV-C 217 (449)
T ss_pred ------CCccCCCCCCCC-----CChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc-C
Confidence 000011112221 2222222211100000011222223334566789999999999999999888653 3
Q ss_pred CCeeeeccCCCCCC----CCCCCC-C-----CCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCE
Q 011765 240 KPVIPVGQLPTTTG----DGDSDA-E-----TDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPF 309 (478)
Q Consensus 240 ~~~~~vGp~~~~~~----~~~~~~-~-----~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~ 309 (478)
+++.|||+..... ...... . ....+++.+||+.++++++|||||||....+.+++.+++.+| ++.+|
T Consensus 218 -~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~f 294 (449)
T PLN02173 218 -PVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSY 294 (449)
T ss_pred -CeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCE
Confidence 5999999974210 000000 0 012346999999999899999999999999999999999999 78889
Q ss_pred EEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchh
Q 011765 310 FWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQG 389 (478)
Q Consensus 310 i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~ 389 (478)
+|+++.. ....+|+++.++...+|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+
T Consensus 295 lWvvr~~------~~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~ 368 (449)
T PLN02173 295 LWVVRAS------EESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQP 368 (449)
T ss_pred EEEEecc------chhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcch
Confidence 9999853 2345888888888778899889999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhc-CeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhc----ccCChHHHHHHHHHHHH
Q 011765 390 LNAKLLEEK-QIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFG----DKGRHDRYVDNFLNYLK 463 (478)
Q Consensus 390 ~na~~v~~~-g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~i~~~~~ 463 (478)
.||+++++. |+|+.+...++++.++.++|+++|+++|.+++.+++|+||++++++.+ ++|++.++++.+++.+.
T Consensus 369 ~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 369 MNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred HHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Confidence 999999986 999998754434567999999999999986666899999999999977 78888999999998774
No 8
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=4.8e-61 Score=475.93 Aligned_cols=437 Identities=28% Similarity=0.417 Sum_probs=322.6
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIA-QKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLP 84 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~ 84 (478)
+.||+++|+|++||++|++.||+.|+ .+|++|||++++.+...+...... .+.+.++.+|++..++++....
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~-~~~i~~~~lp~p~~~glp~~~~------ 77 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLN-STGVDIVGLPSPDISGLVDPSA------ 77 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhcccc-CCCceEEECCCccccCCCCCCc------
Confidence 57999999999999999999999998 789999999999775443221100 1248899998766555542111
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHhhc--CCCEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHhhccccccccccCCCC
Q 011765 85 YDEVKYLKQSFDCLEEPMAKLLQSL--APDWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFGPSSVLINDSGDHL 162 (478)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~ll~~~--~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (478)
+....+......+.+.+++++++. +|+|||+|.+++|+..+|+++|||++.++++++..++.+.+...+...... +
T Consensus 78 -~~~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~-~ 155 (481)
T PLN02992 78 -HVVTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKE-E 155 (481)
T ss_pred -cHHHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhcccccc-c
Confidence 111233333445667777777664 689999999999999999999999999999999887765443211111000 0
Q ss_pred CCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHhh--c--
Q 011765 163 KTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQL--H-- 238 (478)
Q Consensus 163 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~--~-- 238 (478)
. .....+..+|+... ++...+.... .......+....+.......++++++|||++||+..+++++.. +
T Consensus 156 ~---~~~~~~~~iPg~~~--l~~~dlp~~~--~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~ 228 (481)
T PLN02992 156 H---TVQRKPLAMPGCEP--VRFEDTLDAY--LVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGR 228 (481)
T ss_pred c---ccCCCCcccCCCCc--cCHHHhhHhh--cCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhcccccc
Confidence 0 00001122332211 2222222111 1111112333334444566789999999999999999988652 1
Q ss_pred --CCCeeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecC
Q 011765 239 --RKPVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKR 316 (478)
Q Consensus 239 --~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 316 (478)
.++++.|||+...... ...++++.+||+.++++++|||||||...++.+++.+++.+|+.++.+|||+++..
T Consensus 229 ~~~~~v~~VGPl~~~~~~------~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~ 302 (481)
T PLN02992 229 VARVPVYPIGPLCRPIQS------SKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPP 302 (481)
T ss_pred ccCCceEEecCccCCcCC------CcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 2469999999753211 22345799999999888999999999999999999999999999999999999742
Q ss_pred CCC-----------C--CC-CCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEecc
Q 011765 317 LGQ-----------A--DT-EPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVL 382 (478)
Q Consensus 317 ~~~-----------~--~~-~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~ 382 (478)
... + .+ ....+|++|.++.+.+|+++.+|+||.+||+|+++++|||||||||++||+++|||||++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~ 382 (481)
T PLN02992 303 VDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAW 382 (481)
T ss_pred cccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEec
Confidence 100 0 00 123589999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHHHh-hcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhc------ccCChHHHH
Q 011765 383 TCYADQGLNAKLLE-EKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFG------DKGRHDRYV 455 (478)
Q Consensus 383 P~~~DQ~~na~~v~-~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~ 455 (478)
|++.||+.||++++ ++|+|+.++.. ++.++.++|+++|++++.+++.+++|++++++++..+ ++|++.+++
T Consensus 383 P~~~DQ~~na~~~~~~~g~gv~~~~~--~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l 460 (481)
T PLN02992 383 PLFAEQNMNAALLSDELGIAVRSDDP--KEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHESL 460 (481)
T ss_pred CccchhHHHHHHHHHHhCeeEEecCC--CCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 99999999999995 88999999752 1248999999999999986556799999999999865 256678888
Q ss_pred HHHHHHHHhcc
Q 011765 456 DNFLNYLKNHR 466 (478)
Q Consensus 456 ~~i~~~~~~~~ 466 (478)
+.+++.+.+..
T Consensus 461 ~~~v~~~~~~~ 471 (481)
T PLN02992 461 CRVTKECQRFL 471 (481)
T ss_pred HHHHHHHHHHH
Confidence 88888776543
No 9
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=9.1e-61 Score=475.32 Aligned_cols=449 Identities=25% Similarity=0.333 Sum_probs=321.9
Q ss_pred CCC-CCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCC---CC-----CCCCeEEEEecCCCCC
Q 011765 1 MAD-NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLP---QN-----LASMIQFVKISLPHVD 71 (478)
Q Consensus 1 ~~~-~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g---~~-----~~~~i~~~~i~~~~~~ 71 (478)
|.+ +.+.||+++|+|++||++|++.||+.|+.+|..|||++++.+...+.+.. .. ....++|..+| +
T Consensus 1 ~~~~~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~p----d 76 (480)
T PLN02555 1 MESESSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFE----D 76 (480)
T ss_pred CCCCCCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCC----C
Confidence 777 55799999999999999999999999999999999999997665443210 00 01125555555 5
Q ss_pred CCCCCccccCCCChhHHHHHHHHHhhhhHHHHHHHhhc----CC-CEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHH
Q 011765 72 NLRENAEATIDLPYDEVKYLKQSFDCLEEPMAKLLQSL----AP-DWLLFDFAAYWLPARARELGIPSGFFSIFTAATLG 146 (478)
Q Consensus 72 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~----~p-D~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~ 146 (478)
+++++.... .+...++......+.+.+.+++++. +| +|||+|.+.+|+..+|+++|||.+++++++++.+.
T Consensus 77 glp~~~~~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~ 152 (480)
T PLN02555 77 GWAEDDPRR----QDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFS 152 (480)
T ss_pred CCCCCcccc----cCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHH
Confidence 666543321 1222344444334566666666542 45 99999999999999999999999999999999888
Q ss_pred hhccccccccccCCCCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCcc
Q 011765 147 YFGPSSVLINDSGDHLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEF 226 (478)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~l 226 (478)
.+.+.. .. ..+ .........+..+|+.. .++..+++.+..........+....+......+++++++|||++|
T Consensus 153 ~~~~~~--~~--~~~-~~~~~~~~~~~~iPglp--~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eL 225 (480)
T PLN02555 153 AYYHYY--HG--LVP-FPTETEPEIDVQLPCMP--LLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQEL 225 (480)
T ss_pred HHHHHh--hc--CCC-cccccCCCceeecCCCC--CcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHH
Confidence 766542 10 000 00000000011123211 133333332221000111112223333345667899999999999
Q ss_pred ChHHHHHHHhhcCCCeeeeccCCCCCCCC-CCC-CC-CCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHH
Q 011765 227 EPEWLKLLEQLHRKPVIPVGQLPTTTGDG-DSD-AE-TDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLE 303 (478)
Q Consensus 227 e~~~~~~~~~~~~~~~~~vGp~~~~~~~~-~~~-~~-~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~ 303 (478)
|+..++.+.... + ++.|||+....... ... .. ...++++.+||+.++++++|||||||....+.+++.+++.+|+
T Consensus 226 E~~~~~~l~~~~-~-v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~ 303 (480)
T PLN02555 226 EKEIIDYMSKLC-P-IKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVL 303 (480)
T ss_pred hHHHHHHHhhCC-C-EEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHH
Confidence 999998886644 3 99999997532110 000 00 2234679999999988889999999999999999999999999
Q ss_pred hCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccc
Q 011765 304 LSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLT 383 (478)
Q Consensus 304 ~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P 383 (478)
.++++|||+++............+|+++.++.+ +|.++.+|+||.+||+|+++++|||||||||++||+++|||||++|
T Consensus 304 ~~~~~flW~~~~~~~~~~~~~~~lp~~~~~~~~-~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P 382 (480)
T PLN02555 304 NSGVSFLWVMRPPHKDSGVEPHVLPEEFLEKAG-DKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFP 382 (480)
T ss_pred hcCCeEEEEEecCcccccchhhcCChhhhhhcC-CceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCC
Confidence 999999999974311000022468888887764 4567779999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHhhc-CeEEEeeccC-CCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhc----ccCChHHHHHH
Q 011765 384 CYADQGLNAKLLEEK-QIVELIPRDE-GDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFG----DKGRHDRYVDN 457 (478)
Q Consensus 384 ~~~DQ~~na~~v~~~-g~G~~l~~~~-~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~ 457 (478)
++.||+.||+++++. |+|+.+.... ..+.++.++|+++|++++++++++++|+||++|++..+ ++|++.++++.
T Consensus 383 ~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~ 462 (480)
T PLN02555 383 QWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQE 462 (480)
T ss_pred CccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 999999999999887 9999995311 12348999999999999986667899999999999954 67888999999
Q ss_pred HHHHHHhccc
Q 011765 458 FLNYLKNHRC 467 (478)
Q Consensus 458 i~~~~~~~~~ 467 (478)
+++.+.+...
T Consensus 463 ~v~~i~~~~~ 472 (480)
T PLN02555 463 FVDKLVRKSV 472 (480)
T ss_pred HHHHHHhccc
Confidence 9999976643
No 10
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=1.3e-60 Score=474.63 Aligned_cols=435 Identities=24% Similarity=0.353 Sum_probs=315.2
Q ss_pred CCC--CCccEEEEecCCCccCHHHHHHHHHH--HHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCC
Q 011765 1 MAD--NSKLQIAMFPWLAFGHMIPWLELAKL--IAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLREN 76 (478)
Q Consensus 1 ~~~--~~~~~il~~~~~~~gH~~p~l~La~~--L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~ 76 (478)
|++ +++.||+++|+|++||++|++.||+. |++||+.|||++++.+...+...+. ....+++..+| ++++++
T Consensus 1 ~~~~~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~-~~~~~~~~~~~----~glp~~ 75 (456)
T PLN02210 1 MGSSEGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEK-PRRPVDLVFFS----DGLPKD 75 (456)
T ss_pred CCCcCCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccC-CCCceEEEECC----CCCCCC
Confidence 555 44689999999999999999999999 5699999999999988766543321 12346666665 566654
Q ss_pred ccccCCCChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHhhcccccccc
Q 011765 77 AEATIDLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFGPSSVLIN 156 (478)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~ 156 (478)
.. . ....++......+.+.+.+++++.+|||||+|.+.+|+..+|+++|||.+.+|+..+..+..+.+....
T Consensus 76 ~~---~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~-- 147 (456)
T PLN02210 76 DP---R---APETLLKSLNKVGAKNLSKIIEEKRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMK-- 147 (456)
T ss_pred cc---c---CHHHHHHHHHHhhhHHHHHHHhcCCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhc--
Confidence 32 1 112344444445567788888888899999999999999999999999999999999988876643210
Q ss_pred ccCCCCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccc-hhhhhhhccccCCcEEEEcCcCccChHHHHHHH
Q 011765 157 DSGDHLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNV-SHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLE 235 (478)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~ 235 (478)
....+.. .... .+..+|... .++..++.... .......+ ....++.+....++++++|||+++|++.++.++
T Consensus 148 ~~~~~~~--~~~~-~~~~~Pgl~--~~~~~dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~ 220 (456)
T PLN02210 148 TNSFPDL--EDLN-QTVELPALP--LLEVRDLPSFM--LPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMA 220 (456)
T ss_pred cCCCCcc--cccC-CeeeCCCCC--CCChhhCChhh--hcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHh
Confidence 0001100 0000 011123211 12222222211 11111112 122233344567899999999999999999887
Q ss_pred hhcCCCeeeeccCCCCC---CCCCC--CCC----CCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCC
Q 011765 236 QLHRKPVIPVGQLPTTT---GDGDS--DAE----TDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSK 306 (478)
Q Consensus 236 ~~~~~~~~~vGp~~~~~---~~~~~--~~~----~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~ 306 (478)
. . +++++|||+.... ..... ... ...+++|.+||+.++++++|||||||....+.+++.+++.+|+.++
T Consensus 221 ~-~-~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~ 298 (456)
T PLN02210 221 D-L-KPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRG 298 (456)
T ss_pred h-c-CCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCC
Confidence 6 3 4799999997421 10000 000 1235679999999988899999999999889999999999999999
Q ss_pred CCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEecccccc
Q 011765 307 LPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYA 386 (478)
Q Consensus 307 ~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~ 386 (478)
.+|||+++... ....++.+.++...++.++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.
T Consensus 299 ~~flw~~~~~~------~~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~ 372 (456)
T PLN02210 299 VPFLWVIRPKE------KAQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWT 372 (456)
T ss_pred CCEEEEEeCCc------cccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEeccccc
Confidence 99999997531 112334555554323445679999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHhh-cCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhc----ccCChHHHHHHHHHH
Q 011765 387 DQGLNAKLLEE-KQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFG----DKGRHDRYVDNFLNY 461 (478)
Q Consensus 387 DQ~~na~~v~~-~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~i~~~ 461 (478)
||+.||+++++ +|+|+.+...+.++.+++++|+++|+++|.+++.+++|+||++|++..+ ++|++.++++.+++.
T Consensus 373 DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~ 452 (456)
T PLN02210 373 DQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISD 452 (456)
T ss_pred ccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 99999999998 8999999753223458999999999999985556679999999999865 667889999999987
Q ss_pred HH
Q 011765 462 LK 463 (478)
Q Consensus 462 ~~ 463 (478)
+.
T Consensus 453 ~~ 454 (456)
T PLN02210 453 IT 454 (456)
T ss_pred Hh
Confidence 74
No 11
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=7.8e-61 Score=481.83 Aligned_cols=454 Identities=27% Similarity=0.379 Sum_probs=325.2
Q ss_pred CCCCCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCC---CC--CeEEEEecCCCC-CCCC
Q 011765 1 MADNSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNL---AS--MIQFVKISLPHV-DNLR 74 (478)
Q Consensus 1 ~~~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~---~~--~i~~~~i~~~~~-~~l~ 74 (478)
|+++ ++||+++|+|++||++|++.||+.|+.||++|||++++.+...++..+... .+ .+.+..+++|.. ++++
T Consensus 1 ~~~~-~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP 79 (482)
T PLN03007 1 MNHE-KLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLP 79 (482)
T ss_pred CCCC-CcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCC
Confidence 5554 689999999999999999999999999999999999998876665443210 11 235555665543 2566
Q ss_pred CCccccCC-------CChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHh
Q 011765 75 ENAEATID-------LPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGY 147 (478)
Q Consensus 75 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~ 147 (478)
++...... ........+......+.+.+.+++++.+|||||+|.+++|+..+|+++|||.++||+++++....
T Consensus 80 ~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~ 159 (482)
T PLN03007 80 EGCENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETTRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCA 159 (482)
T ss_pred CCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHH
Confidence 55433211 11133334445556677888888888899999999999999999999999999999998877665
Q ss_pred hccccccccccCCCCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccC
Q 011765 148 FGPSSVLINDSGDHLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFE 227 (478)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le 227 (478)
+............+ ........+.+|. .+.++...+... ..............+...+++.+++||+++||
T Consensus 160 ~~~~~~~~~~~~~~---~~~~~~~~pg~p~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le 230 (482)
T PLN03007 160 SYCIRVHKPQKKVA---SSSEPFVIPDLPG--DIVITEEQINDA----DEESPMGKFMKEVRESEVKSFGVLVNSFYELE 230 (482)
T ss_pred HHHHHhcccccccC---CCCceeeCCCCCC--ccccCHHhcCCC----CCchhHHHHHHHHHhhcccCCEEEEECHHHHH
Confidence 44222000000000 0000000111111 111121111110 01100112333444556778999999999999
Q ss_pred hHHHHHHHhhcCCCeeeeccCCCCCCCC---C--CCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHH
Q 011765 228 PEWLKLLEQLHRKPVIPVGQLPTTTGDG---D--SDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGL 302 (478)
Q Consensus 228 ~~~~~~~~~~~~~~~~~vGp~~~~~~~~---~--~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al 302 (478)
++..+.+++...+++++|||+....... . ........+++.+||+..+++++|||||||+...+.+++.+++.+|
T Consensus 231 ~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l 310 (482)
T PLN03007 231 SAYADFYKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGL 310 (482)
T ss_pred HHHHHHHHhccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHH
Confidence 9988888777666799999986432110 0 0000123467999999998899999999999988899999999999
Q ss_pred HhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEecc
Q 011765 303 ELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVL 382 (478)
Q Consensus 303 ~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~ 382 (478)
+.++.+|||+++..... .+....+|+++.++...+|+++.+|+||.+||+|+++++|||||||||++||+++|||||++
T Consensus 311 ~~~~~~flw~~~~~~~~-~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~ 389 (482)
T PLN03007 311 EGSGQNFIWVVRKNENQ-GEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTW 389 (482)
T ss_pred HHCCCCEEEEEecCCcc-cchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeec
Confidence 99999999999854210 00223589999999989999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHHHhhc-CeEEEeeccC----CCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhc----ccCChHH
Q 011765 383 TCYADQGLNAKLLEEK-QIVELIPRDE----GDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFG----DKGRHDR 453 (478)
Q Consensus 383 P~~~DQ~~na~~v~~~-g~G~~l~~~~----~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~ 453 (478)
|++.||+.||+++++. ++|+.+.... +.+.++.++|+++|++++.++++++||+||+++++..+ ++|++.+
T Consensus 390 P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gGsS~~ 469 (482)
T PLN03007 390 PVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGGSSFN 469 (482)
T ss_pred cchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCcHHH
Confidence 9999999999988742 4444442110 01238999999999999985545699999999999876 5677899
Q ss_pred HHHHHHHHHHhc
Q 011765 454 YVDNFLNYLKNH 465 (478)
Q Consensus 454 ~~~~i~~~~~~~ 465 (478)
+++.|++.+.+.
T Consensus 470 ~l~~~v~~~~~~ 481 (482)
T PLN03007 470 DLNKFMEELNSR 481 (482)
T ss_pred HHHHHHHHHHhc
Confidence 999999988754
No 12
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=3.7e-60 Score=471.52 Aligned_cols=452 Identities=26% Similarity=0.420 Sum_probs=329.0
Q ss_pred CCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCC---CCCCeEEEEecCCCC-CCCCCCccc
Q 011765 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQN---LASMIQFVKISLPHV-DNLRENAEA 79 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~---~~~~i~~~~i~~~~~-~~l~~~~~~ 79 (478)
++++||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+...... ....++|+.+|+|.. ++++++...
T Consensus 6 ~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~ 85 (491)
T PLN02534 6 AKQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCEN 85 (491)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCccc
Confidence 3457999999999999999999999999999999999999876544332110 011389999998754 477766544
Q ss_pred cCCCCh-hHHHHHHHHHhhhhHHHHHHHhhc--CCCEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHhhcccccccc
Q 011765 80 TIDLPY-DEVKYLKQSFDCLEEPMAKLLQSL--APDWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFGPSSVLIN 156 (478)
Q Consensus 80 ~~~~~~-~~~~~~~~~~~~~~~~l~~ll~~~--~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~ 156 (478)
..+... .....+......+.+.+.+++++. +|+|||+|.+++|+..+|+++|||.+.|++++++....+........
T Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~ 165 (491)
T PLN02534 86 LDTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLHNA 165 (491)
T ss_pred cccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHhcc
Confidence 333232 344445555566778888888763 57999999999999999999999999999999988765432210000
Q ss_pred ccCCCCCCCCcccCCCccccccc-ccccchhhhhhhhhhhcCCcccch-hhhhhhccccCCcEEEEcCcCccChHHHHHH
Q 011765 157 DSGDHLKTPEDYTRVPNWVSFPT-TISYRLFEARKVFDILISDESNVS-HGYRFGQSLKGCDIVAVRSCMEFEPEWLKLL 234 (478)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~ 234 (478)
..+ ..... .+..+|... ...++...+.+.. ... ..+. ....+......++++++|||++||+..++.+
T Consensus 166 --~~~-~~~~~---~~~~iPg~p~~~~l~~~dlp~~~---~~~-~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l 235 (491)
T PLN02534 166 --HLS-VSSDS---EPFVVPGMPQSIEITRAQLPGAF---VSL-PDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAY 235 (491)
T ss_pred --ccc-CCCCC---ceeecCCCCccccccHHHCChhh---cCc-ccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHH
Confidence 000 00000 111123211 1122333322211 000 1111 1112222334577999999999999999999
Q ss_pred HhhcCCCeeeeccCCCCCCCCC---CCCC--CCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCE
Q 011765 235 EQLHRKPVIPVGQLPTTTGDGD---SDAE--TDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPF 309 (478)
Q Consensus 235 ~~~~~~~~~~vGp~~~~~~~~~---~~~~--~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~ 309 (478)
...++++++.|||+........ .... ..+.++|.+||+.++++++|||||||......+++.+++.+|+.++.+|
T Consensus 236 ~~~~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~f 315 (491)
T PLN02534 236 EKAIKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPF 315 (491)
T ss_pred HhhcCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCE
Confidence 8877778999999974221000 0000 1123569999999998999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchh
Q 011765 310 FWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQG 389 (478)
Q Consensus 310 i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~ 389 (478)
+|+++......+.....+|++|.++.+.+|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+
T Consensus 316 lW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~ 395 (491)
T PLN02534 316 IWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQF 395 (491)
T ss_pred EEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHH
Confidence 99998431100001123688999888888999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhc-CeEEEeecc--------CCCC-cccHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHhc----ccCChHH
Q 011765 390 LNAKLLEEK-QIVELIPRD--------EGDG-FFTRNSVAESLRLVLV--EEKGQIYRDKAKEMKGLFG----DKGRHDR 453 (478)
Q Consensus 390 ~na~~v~~~-g~G~~l~~~--------~~~~-~~~~~~l~~~i~~ll~--~~~~~~~~~~a~~~~~~~~----~~~~~~~ 453 (478)
.||+++++. |+|+.+... ++.| ++++++|+++|+++|. +|+++++|+||++|++..+ ++|++.+
T Consensus 396 ~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS~~ 475 (491)
T PLN02534 396 LNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSSHI 475 (491)
T ss_pred HHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 999998755 999988521 0112 5899999999999996 4557899999999999865 6688899
Q ss_pred HHHHHHHHHHhc
Q 011765 454 YVDNFLNYLKNH 465 (478)
Q Consensus 454 ~~~~i~~~~~~~ 465 (478)
+++.|++.+.+.
T Consensus 476 nl~~fv~~i~~~ 487 (491)
T PLN02534 476 NLSILIQDVLKQ 487 (491)
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
No 13
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=3.3e-60 Score=471.32 Aligned_cols=433 Identities=23% Similarity=0.288 Sum_probs=312.2
Q ss_pred CCCCCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCcccc
Q 011765 1 MADNSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEAT 80 (478)
Q Consensus 1 ~~~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~ 80 (478)
|.-..+.||+++|+|++||++|++.||+.|+.+|++|||++++.+...+.....+ .++++++.+| ++++++.
T Consensus 1 ~~~~~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~-~~~i~~v~lp----~g~~~~~--- 72 (448)
T PLN02562 1 MKVTQRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDP-KLGITFMSIS----DGQDDDP--- 72 (448)
T ss_pred CCCCCCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCC-CCCEEEEECC----CCCCCCc---
Confidence 4445577999999999999999999999999999999999999876554432111 1248999988 4443221
Q ss_pred CCCChhHHHHHHHHHhhhhHHHHHHHhhc---CC-CEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHhhcccccccc
Q 011765 81 IDLPYDEVKYLKQSFDCLEEPMAKLLQSL---AP-DWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFGPSSVLIN 156 (478)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~---~p-D~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~ 156 (478)
..+...++......+.+.+.+++++. .| +|||+|.+.+|+..+|+++|||.+.+|++++..+..+.+...+..
T Consensus 73 ---~~~~~~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~ 149 (448)
T PLN02562 73 ---PRDFFSIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVR 149 (448)
T ss_pred ---cccHHHHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhh
Confidence 11222233333335667777777664 23 799999999999999999999999999999887776654321111
Q ss_pred ccCCCCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHh
Q 011765 157 DSGDHLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQ 236 (478)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~ 236 (478)
.+..+.........+...+|... .++..+++.+..........+....+......+++++++|||++||+..++....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~Pg~~--~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 227 (448)
T PLN02562 150 TGLISETGCPRQLEKICVLPEQP--LLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQA 227 (448)
T ss_pred ccccccccccccccccccCCCCC--CCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHh
Confidence 11110000000000111223211 1223333322210000111233333444556678999999999999988876653
Q ss_pred h----cCCCeeeeccCCCCCCCCCCCCC-CCChhhHhhhcccCCCCceEEEEeCccc-CCCHHHHHHHHHHHHhCCCCEE
Q 011765 237 L----HRKPVIPVGQLPTTTGDGDSDAE-TDTWRSIKEWLDEQEKGSVVYVAFGSEA-KPSQEELTEIALGLELSKLPFF 310 (478)
Q Consensus 237 ~----~~~~~~~vGp~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~v~vs~Gs~~-~~~~~~~~~~~~al~~~~~~~i 310 (478)
. ..++++.|||+............ ...+.++.+||+.++++++|||||||.. ..+.+++.+++.+|++++.+||
T Consensus 228 ~~~~~~~~~v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fi 307 (448)
T PLN02562 228 SYNNGQNPQILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFI 307 (448)
T ss_pred hhccccCCCEEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEE
Confidence 2 34679999999864321000000 1234568899999988899999999976 5788999999999999999999
Q ss_pred EEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhh
Q 011765 311 WVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGL 390 (478)
Q Consensus 311 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~ 390 (478)
|+++.. ....+|++++++.. +|+++.+|+||.+||+|+++++|||||||||++||+++|||+|++|+++||+.
T Consensus 308 W~~~~~------~~~~l~~~~~~~~~-~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~ 380 (448)
T PLN02562 308 WVLNPV------WREGLPPGYVERVS-KQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFV 380 (448)
T ss_pred EEEcCC------chhhCCHHHHHHhc-cCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHH
Confidence 999743 22357888877764 46777899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc-CeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcc---cCChHHHHHHHHHHH
Q 011765 391 NAKLLEEK-QIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGD---KGRHDRYVDNFLNYL 462 (478)
Q Consensus 391 na~~v~~~-g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~i~~~~ 462 (478)
||+++++. |+|+.+. + ++.++|+++|+++|+ +++||+||+++++.+.+ +|++.++++.|++.+
T Consensus 381 na~~~~~~~g~g~~~~--~----~~~~~l~~~v~~~l~---~~~~r~~a~~l~~~~~~~~~gGSS~~nl~~~v~~~ 447 (448)
T PLN02562 381 NCAYIVDVWKIGVRIS--G----FGQKEVEEGLRKVME---DSGMGERLMKLRERAMGEEARLRSMMNFTTLKDEL 447 (448)
T ss_pred HHHHHHHHhCceeEeC--C----CCHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999875 9998874 4 799999999999999 88999999999999864 368899999998876
No 14
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=2.6e-59 Score=462.73 Aligned_cols=439 Identities=21% Similarity=0.352 Sum_probs=310.5
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCC--CeEEEEeCCCccc-cCCCCCC---CCCCCeEEEEecCCCCCCCCCCcccc
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKG--HKIFFISTPRNID-RLPRLPQ---NLASMIQFVKISLPHVDNLRENAEAT 80 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rG--h~Vt~~~~~~~~~-~~~~~g~---~~~~~i~~~~i~~~~~~~l~~~~~~~ 80 (478)
.||+++|+|++||++|++.||+.|+.+| ..|||++++.... .+..... ...+.+.|+.+|.... .+.. ...
T Consensus 4 ~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~--~~~~-~~~ 80 (468)
T PLN02207 4 AELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEE--KPTL-GGT 80 (468)
T ss_pred cEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCC--CCcc-ccc
Confidence 5999999999999999999999999998 9999999987652 1111111 1113599999983111 1110 111
Q ss_pred CCCChhHHHHHHHHHhhh----hHHHHHHHhhc----CC-CEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHhhccc
Q 011765 81 IDLPYDEVKYLKQSFDCL----EEPMAKLLQSL----AP-DWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFGPS 151 (478)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~----~~~l~~ll~~~----~p-D~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~ 151 (478)
.+....+......+ .+.+.+++++. +| +|||+|.+.+|+..+|+++|||.+.++++++..+..+.+.
T Consensus 81 ----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~ 156 (468)
T PLN02207 81 ----QSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYL 156 (468)
T ss_pred ----cCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHh
Confidence 11222333333333 44566666543 34 8999999999999999999999999999999888766544
Q ss_pred cccccccCCCCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHH
Q 011765 152 SVLINDSGDHLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWL 231 (478)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~ 231 (478)
............ ...+ .+..+|+.. ..++...++.+. ... ..+....+......+++++++|||++||++.+
T Consensus 157 ~~~~~~~~~~~~--~~~~-~~~~vPgl~-~~l~~~dlp~~~---~~~-~~~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~ 228 (468)
T PLN02207 157 ADRHSKDTSVFV--RNSE-EMLSIPGFV-NPVPANVLPSAL---FVE-DGYDAYVKLAILFTKANGILVNSSFDIEPYSV 228 (468)
T ss_pred hhccccccccCc--CCCC-CeEECCCCC-CCCChHHCcchh---cCC-ccHHHHHHHHHhcccCCEEEEEchHHHhHHHH
Confidence 211111000000 0000 111233210 012333332221 111 11222223333567889999999999999988
Q ss_pred HHHHh-hcCCCeeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEE
Q 011765 232 KLLEQ-LHRKPVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFF 310 (478)
Q Consensus 232 ~~~~~-~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i 310 (478)
+.++. ...++++.|||+................+++.+||+.++++++|||||||....+.+++.+++.+|+.++++||
T Consensus 229 ~~~~~~~~~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~fl 308 (468)
T PLN02207 229 NHFLDEQNYPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFL 308 (468)
T ss_pred HHHHhccCCCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEE
Confidence 88855 24467999999985322110000011236799999999888999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhh
Q 011765 311 WVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGL 390 (478)
Q Consensus 311 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~ 390 (478)
|+++..... ..+.+|++|+++...+ ..+.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.
T Consensus 309 W~~r~~~~~---~~~~lp~~f~er~~~~-g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~ 384 (468)
T PLN02207 309 WSLRTEEVT---NDDLLPEGFLDRVSGR-GMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQL 384 (468)
T ss_pred EEEeCCCcc---ccccCCHHHHhhcCCC-eEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchh
Confidence 999853211 2346899998887654 466699999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh-cCeEEEeecc---CCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhc----ccCChHHHHHHHHHHH
Q 011765 391 NAKLLEE-KQIVELIPRD---EGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFG----DKGRHDRYVDNFLNYL 462 (478)
Q Consensus 391 na~~v~~-~g~G~~l~~~---~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~i~~~~ 462 (478)
||+++++ +|+|+.+... +..+.++.++|+++|+++|++ ++++||+||+++++.++ ++|++.++++.+++.+
T Consensus 385 Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~ 463 (468)
T PLN02207 385 NAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK-DNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDV 463 (468)
T ss_pred hHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 9998776 7999987421 012347999999999999973 36899999999999976 6677899999999988
Q ss_pred Hhc
Q 011765 463 KNH 465 (478)
Q Consensus 463 ~~~ 465 (478)
...
T Consensus 464 ~~~ 466 (468)
T PLN02207 464 IGI 466 (468)
T ss_pred Hhc
Confidence 654
No 15
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=2.9e-59 Score=460.41 Aligned_cols=435 Identities=28% Similarity=0.388 Sum_probs=317.8
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCCccccC--CCCCCCC--CCCeEEEEecCCCCCCC-CCCccc
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQK-GHKIFFISTPRNIDRL--PRLPQNL--ASMIQFVKISLPHVDNL-RENAEA 79 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~~--~~~g~~~--~~~i~~~~i~~~~~~~l-~~~~~~ 79 (478)
+.||+++|+|++||++|++.||+.|+.+ |..|||++++...... .....+. .+.+.++.+|++..+++ +.+
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~--- 79 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPD--- 79 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCC---
Confidence 3599999999999999999999999987 9999999888655332 1111111 12499999986554443 211
Q ss_pred cCCCChhHHHHHHHHHhhhhHHHHHHHhhc--CCCEEEEcCCcccHHHHHHHhCCC-eEEEecchHHHHHhhcccccccc
Q 011765 80 TIDLPYDEVKYLKQSFDCLEEPMAKLLQSL--APDWLLFDFAAYWLPARARELGIP-SGFFSIFTAATLGYFGPSSVLIN 156 (478)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~--~pD~vI~D~~~~~~~~~A~~lgIP-~i~~~~~~~~~~~~~~~~~~~~~ 156 (478)
. +....+......+.+.+++++++. +|+|||+|.+++|+..+|+++||| .+.++++.++.+..+++.....+
T Consensus 80 --~---~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~ 154 (470)
T PLN03015 80 --A---TIFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDT 154 (470)
T ss_pred --c---cHHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhc
Confidence 0 222234445556777888888765 679999999999999999999999 58888888877765554321111
Q ss_pred ccCCCCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHh
Q 011765 157 DSGDHLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQ 236 (478)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~ 236 (478)
. ..... ...+. +..+|+.. .++..++..... ......+...........+++++++|||++||+..++.++.
T Consensus 155 ~-~~~~~--~~~~~-~~~vPg~p--~l~~~dlp~~~~--~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~ 226 (470)
T PLN03015 155 V-VEGEY--VDIKE-PLKIPGCK--PVGPKELMETML--DRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALRE 226 (470)
T ss_pred c-ccccc--CCCCC-eeeCCCCC--CCChHHCCHhhc--CCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHh
Confidence 0 00000 00011 11233221 123333222111 11111121122222346789999999999999999998877
Q ss_pred hc------CCCeeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEE
Q 011765 237 LH------RKPVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFF 310 (478)
Q Consensus 237 ~~------~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i 310 (478)
.+ .++++.|||+...... ....+++.+|||.++++++|||||||....+.+++.+++.+|+.++++||
T Consensus 227 ~~~~~~~~~~~v~~VGPl~~~~~~------~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~Fl 300 (470)
T PLN03015 227 DMELNRVMKVPVYPIGPIVRTNVH------VEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFV 300 (470)
T ss_pred hcccccccCCceEEecCCCCCccc------ccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEE
Confidence 52 2469999999742111 12245799999999889999999999999999999999999999999999
Q ss_pred EEEecCCC------CCC-CCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccc
Q 011765 311 WVLKKRLG------QAD-TEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLT 383 (478)
Q Consensus 311 ~~~~~~~~------~~~-~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P 383 (478)
|+++.... .++ +....+|+++.++.+.+++++.+|+||.+||+|+++++|||||||||++||+++|||||++|
T Consensus 301 Wv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P 380 (470)
T PLN03015 301 WVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWP 380 (470)
T ss_pred EEEecCccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecc
Confidence 99974311 000 02236899999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHH-hhcCeEEEeeccCCCCcccHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHhc----ccCChHHHHH
Q 011765 384 CYADQGLNAKLL-EEKQIVELIPRDEGDGFFTRNSVAESLRLVLV--EEKGQIYRDKAKEMKGLFG----DKGRHDRYVD 456 (478)
Q Consensus 384 ~~~DQ~~na~~v-~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~--~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~ 456 (478)
++.||+.||+++ ++.|+|+.+....+.+.++.++|+++|+++|+ +++++++|+||++|++..+ ++|++.++++
T Consensus 381 ~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~ 460 (470)
T PLN03015 381 LYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLF 460 (470)
T ss_pred cccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 999999999998 56799999962111345899999999999996 2557899999999999865 6678899999
Q ss_pred HHHHHH
Q 011765 457 NFLNYL 462 (478)
Q Consensus 457 ~i~~~~ 462 (478)
.+++.+
T Consensus 461 ~~~~~~ 466 (470)
T PLN03015 461 EWAKRC 466 (470)
T ss_pred HHHHhc
Confidence 998876
No 16
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=8.1e-59 Score=464.98 Aligned_cols=434 Identities=25% Similarity=0.387 Sum_probs=313.1
Q ss_pred CCccEEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccC
Q 011765 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQK--GHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATI 81 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~ 81 (478)
+.+.||+++|+|++||++|++.||++|+.| ||.|||++++.+...+..... .++++|+.+| ++++++....
T Consensus 8 ~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~--~~gi~fv~lp----~~~p~~~~~~- 80 (459)
T PLN02448 8 TTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK--PDNIRFATIP----NVIPSELVRA- 80 (459)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC--CCCEEEEECC----CCCCCccccc-
Confidence 457899999999999999999999999999 999999999998776665421 1249999998 3344332211
Q ss_pred CCChhHHHHHHHHHhhhhHHHHHHHhhc--CCCEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHhhccccccccccC
Q 011765 82 DLPYDEVKYLKQSFDCLEEPMAKLLQSL--APDWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFGPSSVLINDSG 159 (478)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~--~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (478)
.+...++......+.+.+.+++++. ++||||+|.+++|+..+|+++|||++.++++++..+..+.+...+.....
T Consensus 81 ---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~ 157 (459)
T PLN02448 81 ---ADFPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGH 157 (459)
T ss_pred ---cCHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccC
Confidence 1222333333334556666776653 57999999999999999999999999999999977776555432211111
Q ss_pred CCCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCc-ccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHhhc
Q 011765 160 DHLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDE-SNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQLH 238 (478)
Q Consensus 160 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~ 238 (478)
.+.........+..++|... .++...+..+. .... ..+...........+++.+++|||++||+..++++...+
T Consensus 158 ~~~~~~~~~~~~~~~iPg~~--~l~~~dlp~~~---~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~ 232 (459)
T PLN02448 158 FPVELSESGEERVDYIPGLS--STRLSDLPPIF---HGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKF 232 (459)
T ss_pred CCCccccccCCccccCCCCC--CCChHHCchhh---cCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhc
Confidence 11000000011112334211 12222222221 1111 112223333334567789999999999999999998877
Q ss_pred CCCeeeeccCCCCCCCC-CCCC--CCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEec
Q 011765 239 RKPVIPVGQLPTTTGDG-DSDA--ETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKK 315 (478)
Q Consensus 239 ~~~~~~vGp~~~~~~~~-~~~~--~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 315 (478)
+++++.|||+....... .... ......++..||+..+++++|||||||....+.+++.+++++|+.++.+|||+++.
T Consensus 233 ~~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~ 312 (459)
T PLN02448 233 PFPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARG 312 (459)
T ss_pred CCceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 77899999997532110 0000 01122479999999988899999999998888999999999999999999998764
Q ss_pred CCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhhHHHHH
Q 011765 316 RLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAKLL 395 (478)
Q Consensus 316 ~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v 395 (478)
.. .++.++. .+|.++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++
T Consensus 313 ~~-----------~~~~~~~-~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v 380 (459)
T PLN02448 313 EA-----------SRLKEIC-GDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLI 380 (459)
T ss_pred ch-----------hhHhHhc-cCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHH
Confidence 21 1222222 13677789999999999999999999999999999999999999999999999999999
Q ss_pred hh-cCeEEEeeccC-CCCcccHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHhc----ccCChHHHHHHHHHHHHh
Q 011765 396 EE-KQIVELIPRDE-GDGFFTRNSVAESLRLVLVE--EKGQIYRDKAKEMKGLFG----DKGRHDRYVDNFLNYLKN 464 (478)
Q Consensus 396 ~~-~g~G~~l~~~~-~~~~~~~~~l~~~i~~ll~~--~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~i~~~~~~ 464 (478)
++ +|+|+.+.... +.+.+++++|+++|+++|.+ ++.++||+||++|+++.+ ++|++.++++.+++.+.+
T Consensus 381 ~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~ 457 (459)
T PLN02448 381 VEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQ 457 (459)
T ss_pred HHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 98 48888886321 12347999999999999973 345689999999999865 668889999999998864
No 17
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=8.6e-59 Score=457.70 Aligned_cols=421 Identities=24% Similarity=0.351 Sum_probs=298.1
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCC--CeEEE--EeCCCccccCCCCC---CCCCCCeEEEEecCCCCCCCCCCcc
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKG--HKIFF--ISTPRNIDRLPRLP---QNLASMIQFVKISLPHVDNLRENAE 78 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rG--h~Vt~--~~~~~~~~~~~~~g---~~~~~~i~~~~i~~~~~~~l~~~~~ 78 (478)
+-||+++|+|++||++|++.||+.|+.+| +.||+ .+++.+........ .+..+++.++.+|++.. .+....
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~--~~~~~~ 80 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTP--YSSSST 80 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCC--CCCccc
Confidence 35999999999999999999999999998 55665 44443221111100 01123599999984321 111111
Q ss_pred ccCCCChhHHHHHHHHHhhhhHHHHHHHhhc---C-CCEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHhhcccccc
Q 011765 79 ATIDLPYDEVKYLKQSFDCLEEPMAKLLQSL---A-PDWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFGPSSVL 154 (478)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~---~-pD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~ 154 (478)
. . ......+......+.+.+.+++++. + ++|||+|.+.+|+..+|+++|||.+.+++++++.+..+.+....
T Consensus 81 ~--~--~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~ 156 (451)
T PLN03004 81 S--R--HHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTI 156 (451)
T ss_pred c--c--cCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhc
Confidence 1 1 1122233333445555566666553 3 49999999999999999999999999999999999887664311
Q ss_pred ccccCCCCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHH
Q 011765 155 INDSGDHLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLL 234 (478)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~ 234 (478)
.+. .+.....+ ..+..+|+. ..++...++.+.. ......+...........+++++++|||++||+..++.+
T Consensus 157 ~~~--~~~~~~~~--~~~v~iPg~--p~l~~~dlp~~~~--~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l 228 (451)
T PLN03004 157 DET--TPGKNLKD--IPTVHIPGV--PPMKGSDMPKAVL--ERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAI 228 (451)
T ss_pred ccc--cccccccc--CCeecCCCC--CCCChHHCchhhc--CCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHH
Confidence 110 00000000 001112211 1122233332221 111111233333444566789999999999999999998
Q ss_pred HhhcC-CCeeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEE
Q 011765 235 EQLHR-KPVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVL 313 (478)
Q Consensus 235 ~~~~~-~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~ 313 (478)
+..+. ++++.|||+........ .. ....+++.+||+.++++++|||||||....+.+++.+++.+|+.++.+|||++
T Consensus 229 ~~~~~~~~v~~vGPl~~~~~~~~-~~-~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~ 306 (451)
T PLN03004 229 TEELCFRNIYPIGPLIVNGRIED-RN-DNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVV 306 (451)
T ss_pred HhcCCCCCEEEEeeeccCccccc-cc-cchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 77543 57999999974321110 00 11235699999999889999999999998999999999999999999999999
Q ss_pred ecCCCCCC--CCCC-CCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhh
Q 011765 314 KKRLGQAD--TEPI-ELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGL 390 (478)
Q Consensus 314 ~~~~~~~~--~~~~-~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~ 390 (478)
+....... .... .+|++|+++.+.+|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.
T Consensus 307 r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~ 386 (451)
T PLN03004 307 RNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRF 386 (451)
T ss_pred cCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchh
Confidence 85311000 0112 38999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh-cCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhc
Q 011765 391 NAKLLEE-KQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFG 446 (478)
Q Consensus 391 na~~v~~-~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~ 446 (478)
||+++++ .|+|+.++..+ ++.++.++|+++|+++++ +++||++++++++..+
T Consensus 387 na~~~~~~~g~g~~l~~~~-~~~~~~e~l~~av~~vm~---~~~~r~~a~~~~~~a~ 439 (451)
T PLN03004 387 NRVMIVDEIKIAISMNESE-TGFVSSTEVEKRVQEIIG---ECPVRERTMAMKNAAE 439 (451)
T ss_pred hHHHHHHHhCceEEecCCc-CCccCHHHHHHHHHHHhc---CHHHHHHHHHHHHHHH
Confidence 9999985 69999997532 234899999999999999 7899999999999865
No 18
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=2.6e-58 Score=454.79 Aligned_cols=426 Identities=25% Similarity=0.395 Sum_probs=301.9
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCCcc-ccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQ-KGHKIFFISTPRNI-DRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLP 84 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~-rGh~Vt~~~~~~~~-~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~ 84 (478)
.||+++|+|++||++|++.||+.|+. +|+.|||++++.+. ....... ...+++.|+.++ ++++++.....+
T Consensus 4 ~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~-~~~~~i~~~~i~----dglp~g~~~~~~-- 76 (455)
T PLN02152 4 PHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNH-NNVENLSFLTFS----DGFDDGVISNTD-- 76 (455)
T ss_pred cEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccC-CCCCCEEEEEcC----CCCCCccccccc--
Confidence 49999999999999999999999996 69999999998542 1111110 111358999987 677665322111
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHhhc----CC-CEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHhhccccccccccC
Q 011765 85 YDEVKYLKQSFDCLEEPMAKLLQSL----AP-DWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFGPSSVLINDSG 159 (478)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~ll~~~----~p-D~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (478)
.....+......+.+.+.+++++. +| +|||+|.+.+|+..+|+++|||.+.+++++++.+..+++.... .
T Consensus 77 -~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~--~-- 151 (455)
T PLN02152 77 -DVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTG--N-- 151 (455)
T ss_pred -cHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhcc--C--
Confidence 223344444445556666666542 34 9999999999999999999999999999999998877654200 0
Q ss_pred CCCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhcccc--CCcEEEEcCcCccChHHHHHHHhh
Q 011765 160 DHLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLK--GCDIVAVRSCMEFEPEWLKLLEQL 237 (478)
Q Consensus 160 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~ns~~~le~~~~~~~~~~ 237 (478)
. ....+|... .++..+++.+...............+..+... .++++++|||++||+..++.+..
T Consensus 152 ---------~-~~~~iPglp--~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~- 218 (455)
T PLN02152 152 ---------N-SVFEFPNLP--SLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN- 218 (455)
T ss_pred ---------C-CeeecCCCC--CCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc-
Confidence 0 011122211 12222222222100000001122222333222 24799999999999999988865
Q ss_pred cCCCeeeeccCCCCCC--CCC-C--CCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEE
Q 011765 238 HRKPVIPVGQLPTTTG--DGD-S--DAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWV 312 (478)
Q Consensus 238 ~~~~~~~vGp~~~~~~--~~~-~--~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~ 312 (478)
.+++.|||+..... ... . ......+.++.+||+.++++++|||||||...++.+++.+++.+|+.++.+|||+
T Consensus 219 --~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv 296 (455)
T PLN02152 219 --IEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWV 296 (455)
T ss_pred --CCEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEE
Confidence 25999999974321 000 0 0001223579999999988899999999999999999999999999999999999
Q ss_pred EecCCCCC----CCC--CCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEecccccc
Q 011765 313 LKKRLGQA----DTE--PIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYA 386 (478)
Q Consensus 313 ~~~~~~~~----~~~--~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~ 386 (478)
++...... .+. ...+|+++.++.+. |.++.+|+||.+||+|+++++|||||||||++||+++|||+|++|++.
T Consensus 297 ~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~-~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~ 375 (455)
T PLN02152 297 ITDKLNREAKIEGEEETEIEKIAGFRHELEE-VGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWS 375 (455)
T ss_pred EecCcccccccccccccccccchhHHHhccC-CeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccc
Confidence 98532100 001 11246788877654 456669999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHhhc-CeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhc----ccCChHHHHHHHHHH
Q 011765 387 DQGLNAKLLEEK-QIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFG----DKGRHDRYVDNFLNY 461 (478)
Q Consensus 387 DQ~~na~~v~~~-g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~i~~~ 461 (478)
||+.||+++++. |+|+.+.... ++.++.++|+++|+++|+++ +.+||+|+++|+++.+ .++++.++++.+++.
T Consensus 376 DQ~~na~~~~~~~~~G~~~~~~~-~~~~~~e~l~~av~~vm~~~-~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~ 453 (455)
T PLN02152 376 DQPANAKLLEEIWKTGVRVRENS-EGLVERGEIRRCLEAVMEEK-SVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKT 453 (455)
T ss_pred cchHHHHHHHHHhCceEEeecCc-CCcCcHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 999999999984 6666664322 33479999999999999732 4679999998888765 567788999998886
Q ss_pred H
Q 011765 462 L 462 (478)
Q Consensus 462 ~ 462 (478)
+
T Consensus 454 i 454 (455)
T PLN02152 454 L 454 (455)
T ss_pred h
Confidence 5
No 19
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=4.6e-58 Score=459.21 Aligned_cols=439 Identities=25% Similarity=0.342 Sum_probs=317.4
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCC----CeEEEEeCCCccc----cCCCCCC---CCCCCeEEEEecCCCCCCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKG----HKIFFISTPRNID----RLPRLPQ---NLASMIQFVKISLPHVDNLR 74 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rG----h~Vt~~~~~~~~~----~~~~~g~---~~~~~i~~~~i~~~~~~~l~ 74 (478)
|.||+++|++++||++|++.||+.|+.+| +.|||++++.... .+...-. .....+.+..+|++. ++
T Consensus 3 ~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~---~p 79 (480)
T PLN00164 3 APTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVE---PP 79 (480)
T ss_pred CCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCC---CC
Confidence 45999999999999999999999999996 7999999876532 1111000 001248999998432 22
Q ss_pred CCccccCCCChhHHHHHHHHHhhhhHHHHHHHhhc--CCCEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHhhcccc
Q 011765 75 ENAEATIDLPYDEVKYLKQSFDCLEEPMAKLLQSL--APDWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFGPSS 152 (478)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~--~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~ 152 (478)
.+.. ....++......+.+.+.+++++. .++|||+|.+.+|+..+|+++|||.+.|+++++..+..+.+..
T Consensus 80 ~~~e-------~~~~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~ 152 (480)
T PLN00164 80 TDAA-------GVEEFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLP 152 (480)
T ss_pred Cccc-------cHHHHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhh
Confidence 2211 111344445556677788887765 4599999999999999999999999999999999988777653
Q ss_pred ccccccCCCCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHH
Q 011765 153 VLINDSGDHLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLK 232 (478)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~ 232 (478)
...+....+ . .....+ ..+|+.. .++...++.... ......+.......+...+++++++|||++||+..++
T Consensus 153 ~~~~~~~~~-~--~~~~~~-~~iPGlp--~l~~~dlp~~~~--~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~ 224 (480)
T PLN00164 153 ALDEEVAVE-F--EEMEGA-VDVPGLP--PVPASSLPAPVM--DKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLA 224 (480)
T ss_pred hhcccccCc-c--cccCcc-eecCCCC--CCChHHCCchhc--CCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHH
Confidence 211110000 0 000000 0122111 122222222111 0000111122222334567899999999999999999
Q ss_pred HHHhhc------CCCeeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCC
Q 011765 233 LLEQLH------RKPVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSK 306 (478)
Q Consensus 233 ~~~~~~------~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~ 306 (478)
.++... .++++.|||+........ ....++++.+||+.++++++|||||||....+.+++.+++.+|+.++
T Consensus 225 ~~~~~~~~~~~~~~~v~~vGPl~~~~~~~~---~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~ 301 (480)
T PLN00164 225 AIADGRCTPGRPAPTVYPIGPVISLAFTPP---AEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSG 301 (480)
T ss_pred HHHhccccccCCCCceEEeCCCccccccCC---CccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcC
Confidence 887642 147999999974221110 02345679999999988999999999998889999999999999999
Q ss_pred CCEEEEEecCCCC------CCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEe
Q 011765 307 LPFFWVLKKRLGQ------ADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLI 380 (478)
Q Consensus 307 ~~~i~~~~~~~~~------~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l 380 (478)
.+|||+++..... +.+....+|+++.++.+.+++++.+|+||.+||+|+++++|||||||||++||+++|||||
T Consensus 302 ~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l 381 (480)
T PLN00164 302 HRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMA 381 (480)
T ss_pred CCEEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEE
Confidence 9999999854210 0001224889999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhHHHHHh-hcCeEEEeeccCC-CCcccHHHHHHHHHHHhccc--chHHHHHHHHHHHHHhc----ccCChH
Q 011765 381 VLTCYADQGLNAKLLE-EKQIVELIPRDEG-DGFFTRNSVAESLRLVLVEE--KGQIYRDKAKEMKGLFG----DKGRHD 452 (478)
Q Consensus 381 ~~P~~~DQ~~na~~v~-~~g~G~~l~~~~~-~~~~~~~~l~~~i~~ll~~~--~~~~~~~~a~~~~~~~~----~~~~~~ 452 (478)
++|+++||+.||++++ ++|+|+.+...++ ++.+++++|+++|+++|.++ +.+.+|++|++|++..+ ++|++.
T Consensus 382 ~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~ 461 (480)
T PLN00164 382 PWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSY 461 (480)
T ss_pred eCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 9999999999999875 5799999964321 34579999999999999742 25789999999999876 567789
Q ss_pred HHHHHHHHHHHhc
Q 011765 453 RYVDNFLNYLKNH 465 (478)
Q Consensus 453 ~~~~~i~~~~~~~ 465 (478)
++++.+++.+.+.
T Consensus 462 ~~l~~~v~~~~~~ 474 (480)
T PLN00164 462 AALQRLAREIRHG 474 (480)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988643
No 20
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=7e-58 Score=459.77 Aligned_cols=440 Identities=27% Similarity=0.392 Sum_probs=310.4
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCC--CeEEEEeCCCccccC-------CCCCCCCCCCeEEEEecCCCCCCCCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKG--HKIFFISTPRNIDRL-------PRLPQNLASMIQFVKISLPHVDNLREN 76 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rG--h~Vt~~~~~~~~~~~-------~~~g~~~~~~i~~~~i~~~~~~~l~~~ 76 (478)
|+||+++|+|++||++|++.||+.|+.+| ..|||++++.+.... ........+.++++.+|++. ...
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~----~~~ 77 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGD----QPT 77 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCC----CCc
Confidence 78999999999999999999999999998 889999998764321 10000001349999998432 111
Q ss_pred ccccCCCChhHHHHHHHHHhhhhHHHHHHHhh-----cCC-CEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHhhcc
Q 011765 77 AEATIDLPYDEVKYLKQSFDCLEEPMAKLLQS-----LAP-DWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFGP 150 (478)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~-----~~p-D~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~ 150 (478)
. .. ......+......+.+.+.+++.. .+| +|||+|.+++|+..+|+++|||++.|++++++.+..+.+
T Consensus 78 ~----~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~ 152 (481)
T PLN02554 78 T----ED-PTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLH 152 (481)
T ss_pred c----cc-hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHh
Confidence 1 11 122333334444455566666543 134 899999999999999999999999999999999988776
Q ss_pred ccccccccCCCCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHH
Q 011765 151 SSVLINDSGDHLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEW 230 (478)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~ 230 (478)
.....+....+.....+.. .+..+|... ..++...++... .. ...+....+....+.+++++++||+.+||+..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~-~~v~iPgl~-~pl~~~dlp~~~---~~-~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~ 226 (481)
T PLN02554 153 VQMLYDEKKYDVSELEDSE-VELDVPSLT-RPYPVKCLPSVL---LS-KEWLPLFLAQARRFREMKGILVNTVAELEPQA 226 (481)
T ss_pred hhhhccccccCccccCCCC-ceeECCCCC-CCCCHHHCCCcc---cC-HHHHHHHHHHHHhcccCCEEEEechHHHhHHH
Confidence 5422211100000000000 001122210 011222221111 00 01122222333456678999999999999998
Q ss_pred HHHHHhh--cCCCeeeeccCCC-CCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCC
Q 011765 231 LKLLEQL--HRKPVIPVGQLPT-TTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKL 307 (478)
Q Consensus 231 ~~~~~~~--~~~~~~~vGp~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~ 307 (478)
...+.+. ..++++.|||+.. ...... ......+++.+||+.++++++|||||||+...+.+++.+++.+|+.+++
T Consensus 227 ~~~l~~~~~~~~~v~~vGpl~~~~~~~~~--~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~ 304 (481)
T PLN02554 227 LKFFSGSSGDLPPVYPVGPVLHLENSGDD--SKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGH 304 (481)
T ss_pred HHHHHhcccCCCCEEEeCCCccccccccc--cccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCC
Confidence 8887753 3357999999943 221100 0022346799999999888999999999988899999999999999999
Q ss_pred CEEEEEecCCCC--------CCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcE
Q 011765 308 PFFWVLKKRLGQ--------ADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPL 379 (478)
Q Consensus 308 ~~i~~~~~~~~~--------~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~ 379 (478)
+|||+++..... ..+....+|+++.++... |.++.+|+||.+||+|+++++|||||||||++||+++||||
T Consensus 305 ~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~-~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~ 383 (481)
T PLN02554 305 RFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKD-IGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPM 383 (481)
T ss_pred CeEEEEcCCcccccccccccccchhhhCChHHHHHhcc-CceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCE
Confidence 999999753110 000112368898888754 45667999999999999999999999999999999999999
Q ss_pred eccccccchhhHH-HHHhhcCeEEEeecc-------CCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhc----c
Q 011765 380 IVLTCYADQGLNA-KLLEEKQIVELIPRD-------EGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFG----D 447 (478)
Q Consensus 380 l~~P~~~DQ~~na-~~v~~~g~G~~l~~~-------~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~----~ 447 (478)
|++|+++||+.|| ++++++|+|+.++.. .+.+.++.++|+++|+++|++ +++||+||+++++.++ +
T Consensus 384 l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~--~~~~r~~a~~l~~~~~~av~~ 461 (481)
T PLN02554 384 AAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQ--DSDVRKRVKEMSEKCHVALMD 461 (481)
T ss_pred EecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999 458888999999641 002248999999999999963 5899999999999976 4
Q ss_pred cCChHHHHHHHHHHHHhc
Q 011765 448 KGRHDRYVDNFLNYLKNH 465 (478)
Q Consensus 448 ~~~~~~~~~~i~~~~~~~ 465 (478)
+|++.++++.+++.+.++
T Consensus 462 gGss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 462 GGSSHTALKKFIQDVTKN 479 (481)
T ss_pred CChHHHHHHHHHHHHHhh
Confidence 577789999999998765
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.5e-56 Score=447.91 Aligned_cols=445 Identities=24% Similarity=0.340 Sum_probs=302.1
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCC---eEEEEeCCCccc-----cCCCCCCCCCCCeEEEEecCCCCCCCCCCc
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGH---KIFFISTPRNID-----RLPRLPQNLASMIQFVKISLPHVDNLRENA 77 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh---~Vt~~~~~~~~~-----~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~ 77 (478)
+.||+++|+|++||++|++.||+.|+.+|. .||++++..... .+.... ...+++.|+.||++.. +...
T Consensus 3 ~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~-~~~~~i~~~~lp~~~~---p~~~ 78 (475)
T PLN02167 3 EAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLI-ASEPRIRLVTLPEVQD---PPPM 78 (475)
T ss_pred ccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcc-cCCCCeEEEECCCCCC---Cccc
Confidence 569999999999999999999999999983 567766543221 111110 0113599999985331 1111
Q ss_pred cccCCCC-hhHHHHHHHHHhhhhHHHHHHHhhc------CCCEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHhhcc
Q 011765 78 EATIDLP-YDEVKYLKQSFDCLEEPMAKLLQSL------APDWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFGP 150 (478)
Q Consensus 78 ~~~~~~~-~~~~~~~~~~~~~~~~~l~~ll~~~------~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~ 150 (478)
....... ..+...+......+.+.+.+++.+. .++|||+|.+++|+..+|+++|||.+.|++++++.+..+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~ 158 (475)
T PLN02167 79 ELFVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKY 158 (475)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHH
Confidence 1000111 1222222222222333444443221 24999999999999999999999999999999988887664
Q ss_pred ccccccccCCCCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHH
Q 011765 151 SSVLINDSGDHLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEW 230 (478)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~ 230 (478)
....... ............ +..+|+.. ..++...+..... .. ..+.......+...+++++++|||++||++.
T Consensus 159 ~~~~~~~-~~~~~~~~~~~~-~~~iPgl~-~~l~~~dlp~~~~--~~--~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~ 231 (475)
T PLN02167 159 LPERHRK-TASEFDLSSGEE-ELPIPGFV-NSVPTKVLPPGLF--MK--ESYEAWVEIAERFPEAKGILVNSFTELEPNA 231 (475)
T ss_pred HHHhccc-cccccccCCCCC-eeECCCCC-CCCChhhCchhhh--Cc--chHHHHHHHHHhhcccCEeeeccHHHHHHHH
Confidence 3211110 000000000000 01122210 0012222221110 00 0111222333446678999999999999999
Q ss_pred HHHHHhhc--CCCeeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCC
Q 011765 231 LKLLEQLH--RKPVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLP 308 (478)
Q Consensus 231 ~~~~~~~~--~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~ 308 (478)
++.++... -++++.|||+................+++.+||+.++++++|||||||....+.+++.+++.+|+.++.+
T Consensus 232 ~~~l~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~ 311 (475)
T PLN02167 232 FDYFSRLPENYPPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCR 311 (475)
T ss_pred HHHHHhhcccCCeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCc
Confidence 98886641 1479999999753221000000122367999999998889999999999888999999999999999999
Q ss_pred EEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccch
Q 011765 309 FFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQ 388 (478)
Q Consensus 309 ~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ 388 (478)
|||+++.......+....+|+++.++.+.++ ++++|+||.+||+|+++++|||||||||++||+++|||||++|++.||
T Consensus 312 flw~~~~~~~~~~~~~~~lp~~~~er~~~rg-~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ 390 (475)
T PLN02167 312 FLWSIRTNPAEYASPYEPLPEGFMDRVMGRG-LVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQ 390 (475)
T ss_pred EEEEEecCcccccchhhhCChHHHHHhccCe-eeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccc
Confidence 9999985321100013358999998887665 555999999999999999999999999999999999999999999999
Q ss_pred hhHHHH-HhhcCeEEEeecc---CCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhc----ccCChHHHHHHHHH
Q 011765 389 GLNAKL-LEEKQIVELIPRD---EGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFG----DKGRHDRYVDNFLN 460 (478)
Q Consensus 389 ~~na~~-v~~~g~G~~l~~~---~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~i~~ 460 (478)
+.||++ ++++|+|+.+... ++++.+++++|+++|+++|.+ ++.||+||+++++..+ ++|++.++++.|++
T Consensus 391 ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~--~~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v~ 468 (475)
T PLN02167 391 QLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDG--EDVPRKKVKEIAEAARKAVMDGGSSFVAVKRFID 468 (475)
T ss_pred hhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 999976 6788999998642 112347999999999999984 3489999999999865 66888999999999
Q ss_pred HHHh
Q 011765 461 YLKN 464 (478)
Q Consensus 461 ~~~~ 464 (478)
.+..
T Consensus 469 ~i~~ 472 (475)
T PLN02167 469 DLLG 472 (475)
T ss_pred HHHh
Confidence 8864
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=3e-51 Score=412.85 Aligned_cols=403 Identities=17% Similarity=0.177 Sum_probs=286.3
Q ss_pred ccEEEEe-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCcccc----
Q 011765 6 KLQIAMF-PWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEAT---- 80 (478)
Q Consensus 6 ~~~il~~-~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~---- 80 (478)
..||+.+ |.++.||+.-+..|+++|++|||+||++++......-... ..+++.+.++.... .+.......
T Consensus 20 ~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~~~~~~----~~~~~~i~~~~~~~-~~~~~~~~~~~~~ 94 (507)
T PHA03392 20 AARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVYYASHL----CGNITEIDASLSVE-YFKKLVKSSAVFR 94 (507)
T ss_pred cccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccccccCC----CCCEEEEEcCCChH-HHHHHHhhhhHHH
Confidence 4578865 8899999999999999999999999999776421110000 13366555431100 000000000
Q ss_pred --CCC--Chh----HHHHHHHHHhh-h-hHHHHHHHh--hcCCCEEEEcCCcccHHHHHHHh-CCCeEEEecchHHHHH-
Q 011765 81 --IDL--PYD----EVKYLKQSFDC-L-EEPMAKLLQ--SLAPDWLLFDFAAYWLPARAREL-GIPSGFFSIFTAATLG- 146 (478)
Q Consensus 81 --~~~--~~~----~~~~~~~~~~~-~-~~~l~~ll~--~~~pD~vI~D~~~~~~~~~A~~l-gIP~i~~~~~~~~~~~- 146 (478)
... ... ....+...|+. + .+.+.++++ +.++|+||+|.+..|+..+|+++ ++|+|.+++.......
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~~ 174 (507)
T PHA03392 95 KRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAENF 174 (507)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhHH
Confidence 000 000 01111223333 2 345677786 67899999999989999999999 9999888775443221
Q ss_pred -hhccccccccccCCCCCCCCcccCCCcccccc-----cccccchhhhhhhhh---------hhcCC----cccchh-hh
Q 011765 147 -YFGPSSVLINDSGDHLKTPEDYTRVPNWVSFP-----TTISYRLFEARKVFD---------ILISD----ESNVSH-GY 206 (478)
Q Consensus 147 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-----~~~~~~~~~~~~~~~---------~~~~~----~~~~~~-~~ 206 (478)
... +.+.+++|+|.. ..+++..+-.+.+.. ..... ...++. ..
T Consensus 175 ~~~g-----------------g~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~ 237 (507)
T PHA03392 175 ETMG-----------------AVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTP 237 (507)
T ss_pred Hhhc-----------------cCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCC
Confidence 111 122355566533 222332222221110 00000 011111 22
Q ss_pred hhhccccCCcEEEEcCcCccChHHHHHHHhhcCCCeeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCc
Q 011765 207 RFGQSLKGCDIVAVRSCMEFEPEWLKLLEQLHRKPVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGS 286 (478)
Q Consensus 207 ~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs 286 (478)
.+.+..++.+++++|+...++++ .++++++++|||+..+.... .+.++++.+|++..+ +++|||||||
T Consensus 238 ~~~~l~~~~~l~lvns~~~~d~~------rp~~p~v~~vGgi~~~~~~~-----~~l~~~l~~fl~~~~-~g~V~vS~GS 305 (507)
T PHA03392 238 TIRELRNRVQLLFVNVHPVFDNN------RPVPPSVQYLGGLHLHKKPP-----QPLDDYLEEFLNNST-NGVVYVSFGS 305 (507)
T ss_pred CHHHHHhCCcEEEEecCccccCC------CCCCCCeeeecccccCCCCC-----CCCCHHHHHHHhcCC-CcEEEEECCC
Confidence 34556677899999999999886 57889999999998743221 456788999998865 5799999999
Q ss_pred ccC---CCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeec
Q 011765 287 EAK---PSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTH 363 (478)
Q Consensus 287 ~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItH 363 (478)
... .+.+.+..+++++++.+.+|||+++.... ...+|+ |+++.+|+||.++|+|+.+++||||
T Consensus 306 ~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~-----~~~~p~---------Nv~i~~w~Pq~~lL~hp~v~~fItH 371 (507)
T PHA03392 306 SIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVE-----AINLPA---------NVLTQKWFPQRAVLKHKNVKAFVTQ 371 (507)
T ss_pred CCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcC-----cccCCC---------ceEEecCCCHHHHhcCCCCCEEEec
Confidence 864 46788999999999999999999875311 123454 9999999999999999999999999
Q ss_pred cChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHH
Q 011765 364 AGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKG 443 (478)
Q Consensus 364 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~ 443 (478)
||+||++||+++|||+|++|++.||+.||+|++++|+|+.++..+ ++.++|.++|+++++ |++|++||+++++
T Consensus 372 GG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~~~----~t~~~l~~ai~~vl~---~~~y~~~a~~ls~ 444 (507)
T PHA03392 372 GGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVT----VSAAQLVLAIVDVIE---NPKYRKNLKELRH 444 (507)
T ss_pred CCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEeccCC----cCHHHHHHHHHHHhC---CHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999887 999999999999999 8999999999999
Q ss_pred HhcccC--ChHHHHHHHHHHHH
Q 011765 444 LFGDKG--RHDRYVDNFLNYLK 463 (478)
Q Consensus 444 ~~~~~~--~~~~~~~~i~~~~~ 463 (478)
.+++++ +.++++..++..++
T Consensus 445 ~~~~~p~~~~~~av~~iE~v~r 466 (507)
T PHA03392 445 LIRHQPMTPLHKAIWYTEHVIR 466 (507)
T ss_pred HHHhCCCCHHHHHHHHHHHHHh
Confidence 999887 56788876666554
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=2.4e-53 Score=435.66 Aligned_cols=389 Identities=25% Similarity=0.326 Sum_probs=236.8
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCC-CCCCCcccc-----C
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVD-NLRENAEAT-----I 81 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~-~l~~~~~~~-----~ 81 (478)
|||++|+ ++||+.++..|+++|++|||+||++++...... ...+ ..++++..++.+... ......... .
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSSSL-NPSK---PSNIRFETYPDPYPEEEFEEIFPEFISKFFS 76 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHHT----------S-CCEEEE-----TT------TTHHHHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccccc-cccc---ccceeeEEEcCCcchHHHhhhhHHHHHHHhh
Confidence 7888885 789999999999999999999999998653321 1111 134666666532211 111110000 0
Q ss_pred -CCC-hhHHHHH---HHHHhhhh---------HHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHh
Q 011765 82 -DLP-YDEVKYL---KQSFDCLE---------EPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGY 147 (478)
Q Consensus 82 -~~~-~~~~~~~---~~~~~~~~---------~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~ 147 (478)
... ......+ ........ +.+.+.+++.++|++|+|.+.+|+..+|+.++||.+.+.+..+....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~~~~- 155 (500)
T PF00201_consen 77 ESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSEKFDLVISDAFDPCGLALAHYLGIPVIIISSSTPMYDL- 155 (500)
T ss_dssp HHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHHHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSCSCC-
T ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccceEeeccchhHHHHHHhcCCeEEEecccccchh-
Confidence 000 0011111 11111111 22334455568999999999999999999999999876442221110
Q ss_pred hccccccccccCCCCCCCCcccCCCcccccc-----cccccchhhhhhh--------hh-hhcC---Cc-ccchhhhhhh
Q 011765 148 FGPSSVLINDSGDHLKTPEDYTRVPNWVSFP-----TTISYRLFEARKV--------FD-ILIS---DE-SNVSHGYRFG 209 (478)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-----~~~~~~~~~~~~~--------~~-~~~~---~~-~~~~~~~~~~ 209 (478)
.....+.+.++++.|.. ..+++..+-.+.+ .. .... .. ..........
T Consensus 156 --------------~~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (500)
T PF00201_consen 156 --------------SSFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFPFSFR 221 (500)
T ss_dssp --------------TCCTSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-GGGCH
T ss_pred --------------hhhccCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcccccccH
Confidence 01111333445555532 1222222111111 11 1111 11 1112222344
Q ss_pred ccccCCcEEEEcCcCccChHHHHHHHhhcCCCeeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccC
Q 011765 210 QSLKGCDIVAVRSCMEFEPEWLKLLEQLHRKPVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAK 289 (478)
Q Consensus 210 ~~~~~~~~~l~ns~~~le~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~ 289 (478)
+.+...+.+++|+...++.+ .+.+|++++||++..... .+.++++..|++...++++|||||||...
T Consensus 222 ~~~~~~~l~l~ns~~~ld~p------rp~~p~v~~vGgl~~~~~-------~~l~~~~~~~~~~~~~~~vv~vsfGs~~~ 288 (500)
T PF00201_consen 222 ELLSNASLVLINSHPSLDFP------RPLLPNVVEVGGLHIKPA-------KPLPEELWNFLDSSGKKGVVYVSFGSIVS 288 (500)
T ss_dssp HHHHHHHHCCSSTEEE----------HHHHCTSTTGCGC-S-----------TCHHHHHHHTSTTTTTEEEEEE-TSSST
T ss_pred HHHHHHHHHhhhccccCcCC------cchhhcccccCccccccc-------cccccccchhhhccCCCCEEEEecCcccc
Confidence 44556788899998888765 345568999999986543 56688899999985667899999999986
Q ss_pred CCH-HHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhh
Q 011765 290 PSQ-EELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSS 368 (478)
Q Consensus 290 ~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s 368 (478)
..+ +....+++++++++.+|||++++. ....+|+ |+++.+|+||.+||+|+++++||||||+||
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~iW~~~~~------~~~~l~~---------n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s 353 (500)
T PF00201_consen 289 SMPEEKLKEIAEAFENLPQRFIWKYEGE------PPENLPK---------NVLIVKWLPQNDLLAHPRVKLFITHGGLNS 353 (500)
T ss_dssp T-HHHHHHHHHHHHHCSTTEEEEEETCS------HGCHHHT---------TEEEESS--HHHHHTSTTEEEEEES--HHH
T ss_pred hhHHHHHHHHHHHHhhCCCccccccccc------ccccccc---------eEEEeccccchhhhhcccceeeeeccccch
Confidence 444 557889999999999999999753 2233443 899999999999999999999999999999
Q ss_pred HHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhccc
Q 011765 369 VVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDK 448 (478)
Q Consensus 369 ~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~ 448 (478)
++||+++|||||++|+++||+.||++++++|+|+.++..+ +|.++|.++|+++|+ |++|++||++++++++++
T Consensus 354 ~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~----~~~~~l~~ai~~vl~---~~~y~~~a~~ls~~~~~~ 426 (500)
T PF00201_consen 354 TQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKND----LTEEELRAAIREVLE---NPSYKENAKRLSSLFRDR 426 (500)
T ss_dssp HHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC-----SHHHHHHHHHHHHH---SHHHHHHHHHHHHTTT--
T ss_pred hhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEecC----CcHHHHHHHHHHHHh---hhHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999988 999999999999999 899999999999999987
Q ss_pred CCh
Q 011765 449 GRH 451 (478)
Q Consensus 449 ~~~ 451 (478)
+.+
T Consensus 427 p~~ 429 (500)
T PF00201_consen 427 PIS 429 (500)
T ss_dssp ---
T ss_pred CCC
Confidence 644
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=1.9e-45 Score=365.58 Aligned_cols=388 Identities=19% Similarity=0.218 Sum_probs=267.3
Q ss_pred ecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCC-CCCCCccccCCCChhHHHH
Q 011765 12 FPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVD-NLRENAEATIDLPYDEVKY 90 (478)
Q Consensus 12 ~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~-~l~~~~~~~~~~~~~~~~~ 90 (478)
+.+|++||++|++.||++|++|||+|+|++++.+.+.++..| +.|..++..... ..... ............
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~G------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 72 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAAG------AEFVLYGSALPPPDNPPE--NTEEEPIDIIEK 72 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHcC------CEEEecCCcCcccccccc--ccCcchHHHHHH
Confidence 468999999999999999999999999999999999999988 898888732111 00000 000111223333
Q ss_pred HHHHHhhhhHHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHhhccccccccccCCCCCCCCcccC
Q 011765 91 LKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFGPSSVLINDSGDHLKTPEDYTR 170 (478)
Q Consensus 91 ~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (478)
+......+.+.+.+++++.+||+||+|.+++++..+|+.+|||+|.+++....... +.++. + +.
T Consensus 73 ~~~~~~~~~~~l~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~-~~~~~--------~-------~~ 136 (392)
T TIGR01426 73 LLDEAEDVLPQLEEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANEE-FEEMV--------S-------PA 136 (392)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehhhccccc-ccccc--------c-------cc
Confidence 33333334455667777889999999998889999999999999988654321100 00000 0 00
Q ss_pred CCcccccccccc-cchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHhhcCCCeeeeccCC
Q 011765 171 VPNWVSFPTTIS-YRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQLHRKPVIPVGQLP 249 (478)
Q Consensus 171 ~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~~~~~~~vGp~~ 249 (478)
............ ........+..++...+........+. ....+..+..+...|+ ..+..++++++++||+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~--~~~~~~~l~~~~~~l~-----~~~~~~~~~~~~~Gp~~ 209 (392)
T TIGR01426 137 GEGSAEEGAIAERGLAEYVARLSALLEEHGITTPPVEFLA--APRRDLNLVYTPKAFQ-----PAGETFDDSFTFVGPCI 209 (392)
T ss_pred chhhhhhhccccchhHHHHHHHHHHHHHhCCCCCCHHHHh--cCCcCcEEEeCChHhC-----CCccccCCCeEEECCCC
Confidence 000000000000 000001112222222211111111111 1223334555533333 33567888999999987
Q ss_pred CCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCCh
Q 011765 250 TTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPD 329 (478)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~ 329 (478)
..... ...|.....++++||||+||........+..+++++++.+.+++|..+..... +....+
T Consensus 210 ~~~~~------------~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~--~~~~~~-- 273 (392)
T TIGR01426 210 GDRKE------------DGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDP--ADLGEL-- 273 (392)
T ss_pred CCccc------------cCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCCh--hHhccC--
Confidence 54321 12366666678899999999876666788889999999999998887643110 011122
Q ss_pred hhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCC
Q 011765 330 GFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEG 409 (478)
Q Consensus 330 ~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~ 409 (478)
.+|+.+..|+|+.++|+++++ +|||||+||++||+++|+|+|++|...||+.||++++++|+|..+...+
T Consensus 274 -------~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~~~~- 343 (392)
T TIGR01426 274 -------PPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPPEE- 343 (392)
T ss_pred -------CCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEecccc-
Confidence 348999999999999999888 9999999999999999999999999999999999999999999998776
Q ss_pred CCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHH
Q 011765 410 DGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYL 462 (478)
Q Consensus 410 ~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~ 462 (478)
+++++|.++|+++|+ |++|+++++++++.+...++.+++++.|++.+
T Consensus 344 ---~~~~~l~~ai~~~l~---~~~~~~~~~~l~~~~~~~~~~~~aa~~i~~~~ 390 (392)
T TIGR01426 344 ---VTAEKLREAVLAVLS---DPRYAERLRKMRAEIREAGGARRAADEIEGFL 390 (392)
T ss_pred ---CCHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Confidence 899999999999999 89999999999999999999999999888765
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=7.8e-45 Score=362.90 Aligned_cols=380 Identities=16% Similarity=0.117 Sum_probs=259.4
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCc---ccc---
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENA---EAT--- 80 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~---~~~--- 80 (478)
|||+|+++|+.||++|++.||++|++|||+|+|++++.+...++..| ++|.+++. ...... ...
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~G------~~~~~~~~----~~~~~~~~~~~~~~~ 70 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAAG------LEFVPVGG----DPDELLASPERNAGL 70 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHcC------CceeeCCC----CHHHHHhhhhhcccc
Confidence 79999999999999999999999999999999999999999888887 88888862 211100 000
Q ss_pred ----CCCChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHhhcccccccc
Q 011765 81 ----IDLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFGPSSVLIN 156 (478)
Q Consensus 81 ----~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~ 156 (478)
..........+......+.+.+.+.+++.+||+||+|.+.+++..+|+++|||++.+++++........
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~------- 143 (401)
T cd03784 71 LLLGPGLLLGALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAFP------- 143 (401)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccCC-------
Confidence 001112223333444444555666667789999999998888899999999999999876543211110
Q ss_pred ccCCCCCCCCcccCCCcccccccccccchhhhhhhh--------hhhcCCcccchhhhhhhccccCCcEEEEcCcCccCh
Q 011765 157 DSGDHLKTPEDYTRVPNWVSFPTTISYRLFEARKVF--------DILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEP 228 (478)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~ 228 (478)
+.. ...............+. .....+ ++..... . ....+..+......
T Consensus 144 ---------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--gl~~~~~-~--~~~~~~~~~~~~~~--- 199 (401)
T cd03784 144 ---------------PPL-GRANLRLYALLEAELWQDLLGAWLRARRRRL--GLPPLSL-L--DGSDVPELYGFSPA--- 199 (401)
T ss_pred ---------------Ccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCcc-c--ccCCCcEEEecCcc---
Confidence 000 00000000000000000 001111 1111000 0 01112222222111
Q ss_pred HHHHHHHhhcCCCeeeec-cCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCC-HHHHHHHHHHHHhCC
Q 011765 229 EWLKLLEQLHRKPVIPVG-QLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPS-QEELTEIALGLELSK 306 (478)
Q Consensus 229 ~~~~~~~~~~~~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~-~~~~~~~~~al~~~~ 306 (478)
+......++++..++| ++...... ...+.++..|++. ++++||||+||..... ...+..++++++..+
T Consensus 200 --~~~~~~~~~~~~~~~g~~~~~~~~~------~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~ 269 (401)
T cd03784 200 --VLPPPPDWPRFDLVTGYGFRDVPYN------GPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLG 269 (401)
T ss_pred --cCCCCCCccccCcEeCCCCCCCCCC------CCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcC
Confidence 1122355677777886 44433222 2335667788865 4679999999998644 466777999999899
Q ss_pred CCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEecccccc
Q 011765 307 LPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYA 386 (478)
Q Consensus 307 ~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~ 386 (478)
.+++|+.+.... ..... ++|+++.+|+||.++|+++++ ||||||+||++||+++|||+|++|+..
T Consensus 270 ~~~i~~~g~~~~----~~~~~---------~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~ 334 (401)
T cd03784 270 QRAILSLGWGGL----GAEDL---------PDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFG 334 (401)
T ss_pred CeEEEEccCccc----cccCC---------CCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCC
Confidence 999999875421 11122 349999999999999999888 999999999999999999999999999
Q ss_pred chhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHH
Q 011765 387 DQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLN 460 (478)
Q Consensus 387 DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~ 460 (478)
||+.||++++++|+|+.++..+ +++++|.++|+++++ ++ ++++++++++.++..++..++++.|++
T Consensus 335 dQ~~~a~~~~~~G~g~~l~~~~----~~~~~l~~al~~~l~---~~-~~~~~~~~~~~~~~~~g~~~~~~~ie~ 400 (401)
T cd03784 335 DQPFWAARVAELGAGPALDPRE----LTAERLAAALRRLLD---PP-SRRRAAALLRRIREEDGVPSAADVIER 400 (401)
T ss_pred CcHHHHHHHHHCCCCCCCCccc----CCHHHHHHHHHHHhC---HH-HHHHHHHHHHHHHhccCHHHHHHHHhh
Confidence 9999999999999999998876 899999999999999 54 566777787887888888888877654
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-44 Score=353.67 Aligned_cols=399 Identities=20% Similarity=0.244 Sum_probs=267.7
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCCh
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPY 85 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~ 85 (478)
+|||+|+..|.+||++|+++||++|.++||+|+|++++.+.+.+++.| +.|..++.. ... ............
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~ag------~~f~~~~~~-~~~-~~~~~~~~~~~~ 72 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAAG------LAFVAYPIR-DSE-LATEDGKFAGVK 72 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHhC------cceeecccc-CCh-hhhhhhhhhccc
Confidence 599999999999999999999999999999999999999999999988 888888732 110 011111111111
Q ss_pred hHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHhhccccccccccCCCCCCC
Q 011765 86 DEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFGPSSVLINDSGDHLKTP 165 (478)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (478)
.... ...........+.+++.+..||+++.|...+.+ .+++..++|++...............+. .+....
T Consensus 73 ~~~~-~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 143 (406)
T COG1819 73 SFRR-LLQQFKKLIRELLELLRELEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLPL-------PPVGIA 143 (406)
T ss_pred hhHH-HhhhhhhhhHHHHHHHHhcchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccCc-------cccccc
Confidence 1111 222222234466677888899999999776655 8899999999987555444332222111 000000
Q ss_pred CcccCCCcccccc--cccccchhhhhhhhhhhcCCcccch-hhhhhhccccCCcEEEEcCcCccChHHHHHHHhhcCCCe
Q 011765 166 EDYTRVPNWVSFP--TTISYRLFEARKVFDILISDESNVS-HGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQLHRKPV 242 (478)
Q Consensus 166 ~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~~~~~ 242 (478)
+....+...++.. .........+.... ..... .+. ...+....+.......+...+...++ ...+|-..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~p~~~ 215 (406)
T COG1819 144 GKLPIPLYPLPPRLVRPLIFARSWLPKLV-VRRNL--GLELGLPNIRRLFASGPLLEIAYTDVLFPP-----GDRLPFIG 215 (406)
T ss_pred ccccccccccChhhccccccchhhhhhhh-hhhhc--cccccccchHHHhcCCCCccccccccccCC-----CCCCCCCc
Confidence 0000000001110 00011111000000 00000 000 00001111112222222222211111 02334456
Q ss_pred eeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCC
Q 011765 243 IPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADT 322 (478)
Q Consensus 243 ~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~ 322 (478)
.++||+...... ++..| ...++++||+|+||.... .+.+..+.++++.++.++|..... ...
T Consensus 216 ~~~~~~~~~~~~-----------~~~~~--~~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~-~~~--- 277 (406)
T COG1819 216 PYIGPLLGEAAN-----------ELPYW--IPADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGG-ARD--- 277 (406)
T ss_pred Cccccccccccc-----------cCcch--hcCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccc-ccc---
Confidence 677777655432 22233 334578999999999976 888999999999999999988865 211
Q ss_pred CCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEE
Q 011765 323 EPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVE 402 (478)
Q Consensus 323 ~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~ 402 (478)
...++|+ |+++.+|+||.++|+++++ ||||||+||++|||++|||+|++|...||+.||.|++++|+|.
T Consensus 278 ~~~~~p~---------n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~ 346 (406)
T COG1819 278 TLVNVPD---------NVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGI 346 (406)
T ss_pred ccccCCC---------ceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCce
Confidence 3566776 9999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHhc
Q 011765 403 LIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLKNH 465 (478)
Q Consensus 403 ~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (478)
.++... ++.+.|+++|+++|+ ++.|+++++++++.+++.++...+++.|++..++.
T Consensus 347 ~l~~~~----l~~~~l~~av~~vL~---~~~~~~~~~~~~~~~~~~~g~~~~a~~le~~~~~~ 402 (406)
T COG1819 347 ALPFEE----LTEERLRAAVNEVLA---DDSYRRAAERLAEEFKEEDGPAKAADLLEEFAREK 402 (406)
T ss_pred ecCccc----CCHHHHHHHHHHHhc---CHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHhcc
Confidence 999987 999999999999999 99999999999999999999888888888766543
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=1e-41 Score=349.81 Aligned_cols=411 Identities=25% Similarity=0.365 Sum_probs=265.1
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCC-CCCCCCCCeEE---EEecCCCC-CCCCCCcccc
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPR-LPQNLASMIQF---VKISLPHV-DNLRENAEAT 80 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~-~g~~~~~~i~~---~~i~~~~~-~~l~~~~~~~ 80 (478)
+.+++++++|++||++|+..||+.|+++||+||++++......... .. ...+.. ..+++... +.++......
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSK---SKSIKKINPPPFEFLTIPDGLPEGWEDD 81 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCccc---ceeeeeeecChHHhhhhhhhhccchHHH
Confidence 4688889999999999999999999999999999999877654432 11 000111 11111000 1111111100
Q ss_pred CCCChhHHHHHHHHHhh-hhHHHHHHH--hhcCCCEEEEcCCcccHHHHHHHhC-CCeEEEecchHHHHHhhcccccccc
Q 011765 81 IDLPYDEVKYLKQSFDC-LEEPMAKLL--QSLAPDWLLFDFAAYWLPARARELG-IPSGFFSIFTAATLGYFGPSSVLIN 156 (478)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~~~~l~~ll--~~~~pD~vI~D~~~~~~~~~A~~lg-IP~i~~~~~~~~~~~~~~~~~~~~~ 156 (478)
..........+...+.. +........ ...++|++|+|.+..+...++.... |+..++++..+.......+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~---- 157 (496)
T KOG1192|consen 82 DLDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSP---- 157 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCc----
Confidence 00000001122222222 222222222 2223999999998666666676664 888888887777665443222
Q ss_pred ccCCCCCCCCcccCCCccccccc------ccccchh-------hhhhhhh----------hhcCCc-ccchhhhhhhccc
Q 011765 157 DSGDHLKTPEDYTRVPNWVSFPT------TISYRLF-------EARKVFD----------ILISDE-SNVSHGYRFGQSL 212 (478)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~-------~~~~~~~----------~~~~~~-~~~~~~~~~~~~~ 212 (478)
..++|... .+.+..+ ....+.. ...... ..........+..
T Consensus 158 ---------------~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 222 (496)
T KOG1192|consen 158 ---------------LSYVPSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGII 222 (496)
T ss_pred ---------------ccccCcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhh
Confidence 11111110 0111100 0000000 000000 0001112233445
Q ss_pred cCCcEEEEcCcCccChHHHHHHHhhcCCCeeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCC--ceEEEEeCccc--
Q 011765 213 KGCDIVAVRSCMEFEPEWLKLLEQLHRKPVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKG--SVVYVAFGSEA-- 288 (478)
Q Consensus 213 ~~~~~~l~ns~~~le~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~v~vs~Gs~~-- 288 (478)
...+..++|+...++.+ .....+++++|||+....... .. ....+|++..+.. ++|||||||..
T Consensus 223 ~~~~~~~ln~~~~~~~~-----~~~~~~~v~~IG~l~~~~~~~-----~~--~~~~~wl~~~~~~~~~vvyvSfGS~~~~ 290 (496)
T KOG1192|consen 223 VNASFIFLNSNPLLDFE-----PRPLLPKVIPIGPLHVKDSKQ-----KS--PLPLEWLDILDESRHSVVYISFGSMVNS 290 (496)
T ss_pred hcCeEEEEccCcccCCC-----CCCCCCCceEECcEEecCccc-----cc--cccHHHHHHHhhccCCeEEEECCccccc
Confidence 56667777776655542 233467899999999773321 11 1456677776554 79999999998
Q ss_pred -CCCHHHHHHHHHHHHhC-CCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhh-hcCCCceeeeeccC
Q 011765 289 -KPSQEELTEIALGLELS-KLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAI-LAHDSVGGFLTHAG 365 (478)
Q Consensus 289 -~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~v-L~~~~~~~~ItHgG 365 (478)
.++.++...++.+++++ +++|+|+++.... ..+++++.++ ...|+..++|+||.++ |+|+++++||||||
T Consensus 291 ~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~~~------~~~~~~~~~~-~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG 363 (496)
T KOG1192|consen 291 ADLPEEQKKELAKALESLQGVTFLWKYRPDDS------IYFPEGLPNR-GRGNVVLSKWAPQNDLLLDHPAVGGFVTHGG 363 (496)
T ss_pred ccCCHHHHHHHHHHHHhCCCceEEEEecCCcc------hhhhhcCCCC-CcCceEEecCCCcHHHhcCCCcCcEEEECCc
Confidence 68899999999999999 8889999986422 1133333322 3458898899999998 59999999999999
Q ss_pred hhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHh
Q 011765 366 WSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLF 445 (478)
Q Consensus 366 ~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~ 445 (478)
|||++|++++|||||++|+++||+.||+++++.|.|..+...+ ++...+..++.++++ +++|+++++++++.+
T Consensus 364 ~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~----~~~~~~~~~~~~il~---~~~y~~~~~~l~~~~ 436 (496)
T KOG1192|consen 364 WNSTLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKRD----LVSEELLEAIKEILE---NEEYKEAAKRLSEIL 436 (496)
T ss_pred ccHHHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehhh----cCcHHHHHHHHHHHc---ChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888888877 677669999999999 899999999999999
Q ss_pred cccCChHHHHHHHHHHHHh
Q 011765 446 GDKGRHDRYVDNFLNYLKN 464 (478)
Q Consensus 446 ~~~~~~~~~~~~i~~~~~~ 464 (478)
++++.....+....++..+
T Consensus 437 ~~~p~~~~~~~~~~e~~~~ 455 (496)
T KOG1192|consen 437 RDQPISPELAVKWVEFVAR 455 (496)
T ss_pred HcCCCCHHHHHHHHHHHHh
Confidence 9888776444434454444
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=1.2e-25 Score=218.29 Aligned_cols=318 Identities=18% Similarity=0.170 Sum_probs=199.9
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccc--cCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCCh
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNID--RLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPY 85 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~--~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~ 85 (478)
||+|.+.++-||++|.++||++|.++||+|+|+++..-.+ .+.+.| +.+..++. ..+. + ....
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g------~~~~~~~~---~~l~----~--~~~~ 67 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKEN------IPYYSISS---GKLR----R--YFDL 67 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccC------CcEEEEec---cCcC----C--CchH
Confidence 6777777777999999999999999999999999776543 223333 77777752 1111 1 1111
Q ss_pred hHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCC--cccHHHHHHHhCCCeEEEecchHHHHHhhccccccccccCCCCC
Q 011765 86 DEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFA--AYWLPARARELGIPSGFFSIFTAATLGYFGPSSVLINDSGDHLK 163 (478)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~--~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (478)
..+........... ....++++.+||+||...- ..++..+|..+++|++..-..
T Consensus 68 ~~~~~~~~~~~~~~-~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n----------------------- 123 (352)
T PRK12446 68 KNIKDPFLVMKGVM-DAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESD----------------------- 123 (352)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEECCC-----------------------
Confidence 11122222222222 3456789999999998752 234689999999999875221
Q ss_pred CCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHhhcC-CCe
Q 011765 164 TPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQLHR-KPV 242 (478)
Q Consensus 164 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~~-~~~ 242 (478)
..|+ +. .++. .+.++.+++ +|++ . ...++ .++
T Consensus 124 ----------~~~g-----~~----nr~~-------------------~~~a~~v~~-~f~~---~-----~~~~~~~k~ 156 (352)
T PRK12446 124 ----------MTPG-----LA----NKIA-------------------LRFASKIFV-TFEE---A-----AKHLPKEKV 156 (352)
T ss_pred ----------CCcc-----HH----HHHH-------------------HHhhCEEEE-Eccc---h-----hhhCCCCCe
Confidence 1111 00 0000 112232222 2221 1 12333 468
Q ss_pred eeec-cCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCH-HHHHHHHHHHHhCCCCEEEEEecCCCCC
Q 011765 243 IPVG-QLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQ-EELTEIALGLELSKLPFFWVLKKRLGQA 320 (478)
Q Consensus 243 ~~vG-p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~ 320 (478)
.++| |+...... ...++..+.+...+++++|+|..||.+.... +.+..++..+. .+.+++|+++.+.
T Consensus 157 ~~tG~Pvr~~~~~-------~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~-~~~~vv~~~G~~~--- 225 (352)
T PRK12446 157 IYTGSPVREEVLK-------GNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL-LKYQIVHLCGKGN--- 225 (352)
T ss_pred EEECCcCCccccc-------ccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc-cCcEEEEEeCCch---
Confidence 8999 44433211 1122233334444567899999999885333 33444444443 2467788876431
Q ss_pred CCCCCCCChhhhhhcCCCcEEEeccC-C-hhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccc-----cchhhHHH
Q 011765 321 DTEPIELPDGFEERTRGRGVVYTSWA-P-QLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCY-----ADQGLNAK 393 (478)
Q Consensus 321 ~~~~~~~p~~~~~~~~~~n~~~~~~v-p-q~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~-----~DQ~~na~ 393 (478)
+.. ...+ ..++.+..|+ + ..++++.+++ +|||||.+|+.|++++|+|+|++|+. .||..||+
T Consensus 226 ------~~~-~~~~--~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~ 294 (352)
T PRK12446 226 ------LDD-SLQN--KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAE 294 (352)
T ss_pred ------HHH-HHhh--cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHH
Confidence 111 0111 1245566787 4 4568998998 99999999999999999999999984 48999999
Q ss_pred HHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchH-HHHHHHHH
Q 011765 394 LLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQ-IYRDKAKE 440 (478)
Q Consensus 394 ~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~-~~~~~a~~ 440 (478)
.++++|+|..+...+ ++++.|.+++.++++ |+ .|++++++
T Consensus 295 ~l~~~g~~~~l~~~~----~~~~~l~~~l~~ll~---~~~~~~~~~~~ 335 (352)
T PRK12446 295 SFERQGYASVLYEED----VTVNSLIKHVEELSH---NNEKYKTALKK 335 (352)
T ss_pred HHHHCCCEEEcchhc----CCHHHHHHHHHHHHc---CHHHHHHHHHH
Confidence 999999999998877 899999999999998 54 45544433
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.95 E-value=2.7e-26 Score=221.92 Aligned_cols=306 Identities=18% Similarity=0.210 Sum_probs=194.4
Q ss_pred cEEEEecCC-CccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCC-ccccCCCC
Q 011765 7 LQIAMFPWL-AFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLREN-AEATIDLP 84 (478)
Q Consensus 7 ~~il~~~~~-~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~-~~~~~~~~ 84 (478)
|||+|...+ |.||+.+++.||++| |||+|+|++.....+.+... +.+..++ ++... .....+..
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~~-------~~~~~~~-----~~~~~~~~~~~~~~ 66 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKPR-------FPVREIP-----GLGPIQENGRLDRW 66 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhccc-------cCEEEcc-----CceEeccCCccchH
Confidence 899997666 779999999999999 69999999998776555432 4444453 11111 11111111
Q ss_pred hhHHHHH--HHHHhhhhHHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHhhccccccccccCCCC
Q 011765 85 YDEVKYL--KQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFGPSSVLINDSGDHL 162 (478)
Q Consensus 85 ~~~~~~~--~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (478)
....... ..........+.+++++.+||+||+| +.+.+..+|+..|||++.+........ +
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDlVIsD-~~~~~~~aa~~~giP~i~i~~~~~~~~-----~----------- 129 (318)
T PF13528_consen 67 KTVRNNIRWLARLARRIRREIRWLREFRPDLVISD-FYPLAALAARRAGIPVIVISNQYWFLH-----P----------- 129 (318)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEc-ChHHHHHHHHhcCCCEEEEEehHHccc-----c-----------
Confidence 1111111 11223344566778888999999999 444577899999999999866443210 0
Q ss_pred CCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhc--cccCCcEEEEcCcCccChHHHHHHHhhcCC
Q 011765 163 KTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQ--SLKGCDIVAVRSCMEFEPEWLKLLEQLHRK 240 (478)
Q Consensus 163 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ns~~~le~~~~~~~~~~~~~ 240 (478)
..+.+.. . .+.++. ..... ....++..+.-++. .. .....
T Consensus 130 ---------~~~~~~~-------~---~~~~~~----------~~~~~~~~~~~~~~~l~~~~~-~~--------~~~~~ 171 (318)
T PF13528_consen 130 ---------NFWLPWD-------Q---DFGRLI----------ERYIDRYHFPPADRRLALSFY-PP--------LPPFF 171 (318)
T ss_pred ---------cCCcchh-------h---hHHHHH----------HHhhhhccCCcccceecCCcc-cc--------ccccc
Confidence 0111100 0 000000 01010 12233434443332 00 01112
Q ss_pred CeeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCC-CCEEEEEecCCCC
Q 011765 241 PVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSK-LPFFWVLKKRLGQ 319 (478)
Q Consensus 241 ~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~ 319 (478)
++.++||+..+.... . ...+++.|+|++|..... .+.++++..+ ..|++. +...
T Consensus 172 ~~~~~~p~~~~~~~~--------------~--~~~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~-- 226 (318)
T PF13528_consen 172 RVPFVGPIIRPEIRE--------------L--PPEDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNA-- 226 (318)
T ss_pred cccccCchhcccccc--------------c--CCCCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCc--
Confidence 466788887643321 0 012345899999987632 6667777666 455544 4321
Q ss_pred CCCCCCCCChhhhhhcCCCcEEEeccC--ChhhhhcCCCceeeeeccChhhHHHHHHhCCcEecccc--ccchhhHHHHH
Q 011765 320 ADTEPIELPDGFEERTRGRGVVYTSWA--PQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTC--YADQGLNAKLL 395 (478)
Q Consensus 320 ~~~~~~~~p~~~~~~~~~~n~~~~~~v--pq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~--~~DQ~~na~~v 395 (478)
... ..+|+.+..|. +..++|+.|++ +|||||+||++|++++|+|+|++|. ..||..||+++
T Consensus 227 ----~~~---------~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l 291 (318)
T PF13528_consen 227 ----ADP---------RPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKL 291 (318)
T ss_pred ----ccc---------cCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHH
Confidence 011 23488888876 44778988888 9999999999999999999999999 78999999999
Q ss_pred hhcCeEEEeeccCCCCcccHHHHHHHHHHH
Q 011765 396 EEKQIVELIPRDEGDGFFTRNSVAESLRLV 425 (478)
Q Consensus 396 ~~~g~G~~l~~~~~~~~~~~~~l~~~i~~l 425 (478)
+++|+|..++..+ ++++.|+++|+++
T Consensus 292 ~~~G~~~~~~~~~----~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 292 EELGLGIVLSQED----LTPERLAEFLERL 317 (318)
T ss_pred HHCCCeEEccccc----CCHHHHHHHHhcC
Confidence 9999999998877 9999999999864
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=1.5e-23 Score=201.08 Aligned_cols=342 Identities=20% Similarity=0.203 Sum_probs=213.9
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCC-eEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCCh
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGH-KIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPY 85 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh-~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~ 85 (478)
|+|++...++-||+.|.++|+++|.++|+ +|.++.+....+...... ..+++..|+. ..+... ...
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~----~~~~~~~I~~---~~~~~~-----~~~- 67 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQ----YGIEFELIPS---GGLRRK-----GSL- 67 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeeccc----cCceEEEEec---cccccc-----CcH-
Confidence 47788888888999999999999999999 588886665544322211 2378887763 111111 111
Q ss_pred hHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcC--CcccHHHHHHHhCCCeEEEecchHHHHHhhccccccccccCCCCC
Q 011765 86 DEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDF--AAYWLPARARELGIPSGFFSIFTAATLGYFGPSSVLINDSGDHLK 163 (478)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~--~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (478)
..+......+.. ..+..+++++.+||+||.-. .+.++..+|..+|||++..-.
T Consensus 68 ~~~~~~~~~~~~-~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEq------------------------ 122 (357)
T COG0707 68 KLLKAPFKLLKG-VLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQ------------------------ 122 (357)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEEEec------------------------
Confidence 111111122222 22667788999999999853 344677899999999998622
Q ss_pred CCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHhhc-CCCe
Q 011765 164 TPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQLH-RKPV 242 (478)
Q Consensus 164 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~-~~~~ 242 (478)
...|+..+ .+. .+.++.+ ..+|+..+ ... +.++
T Consensus 123 ---------n~~~G~an---------k~~-------------------~~~a~~V-~~~f~~~~--------~~~~~~~~ 156 (357)
T COG0707 123 ---------NAVPGLAN---------KIL-------------------SKFAKKV-ASAFPKLE--------AGVKPENV 156 (357)
T ss_pred ---------CCCcchhH---------HHh-------------------HHhhcee-eecccccc--------ccCCCCce
Confidence 22222100 000 0111211 12222100 111 1257
Q ss_pred eeec-cCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCC-HHHHHHHHHHHHhCCCCEEEEEecCCCCC
Q 011765 243 IPVG-QLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPS-QEELTEIALGLELSKLPFFWVLKKRLGQA 320 (478)
Q Consensus 243 ~~vG-p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 320 (478)
..+| |+..+... .+..-.+.... .++++|+|..||.+... .+.+......+.+ +..+++..+.+
T Consensus 157 ~~tG~Pvr~~~~~--------~~~~~~~~~~~-~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~---- 222 (357)
T COG0707 157 VVTGIPVRPEFEE--------LPAAEVRKDGR-LDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKN---- 222 (357)
T ss_pred EEecCcccHHhhc--------cchhhhhhhcc-CCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcc----
Confidence 7888 66644221 01111111112 25779999999988522 2333334444433 45666665532
Q ss_pred CCCCCCCChhhhhhcCCCc-EEEeccCChh-hhhcCCCceeeeeccChhhHHHHHHhCCcEeccccc----cchhhHHHH
Q 011765 321 DTEPIELPDGFEERTRGRG-VVYTSWAPQL-AILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCY----ADQGLNAKL 394 (478)
Q Consensus 321 ~~~~~~~p~~~~~~~~~~n-~~~~~~vpq~-~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~----~DQ~~na~~ 394 (478)
. -+.........+ +.+..|.+++ ++++.+++ +||++|.+|+.|++++|+|+|.+|+- .||..||+.
T Consensus 223 -----~-~~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~ 294 (357)
T COG0707 223 -----D-LEELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKF 294 (357)
T ss_pred -----h-HHHHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHH
Confidence 1 123333333334 7788888774 47877888 99999999999999999999999962 489999999
Q ss_pred HhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHH
Q 011765 395 LEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNY 461 (478)
Q Consensus 395 v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~ 461 (478)
++++|.|..++..+ +|.+++.+.|.++++ +++-.++++.-++.+...+...+.++.++..
T Consensus 295 l~~~gaa~~i~~~~----lt~~~l~~~i~~l~~---~~~~l~~m~~~a~~~~~p~aa~~i~~~~~~~ 354 (357)
T COG0707 295 LEKAGAALVIRQSE----LTPEKLAELILRLLS---NPEKLKAMAENAKKLGKPDAAERIADLLLAL 354 (357)
T ss_pred HHhCCCEEEecccc----CCHHHHHHHHHHHhc---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 99999999999998 999999999999999 6666666666666666666555555555443
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.92 E-value=1.1e-23 Score=203.21 Aligned_cols=310 Identities=16% Similarity=0.141 Sum_probs=175.5
Q ss_pred EEEEe-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeE-EEEecCCCCCCCCCC-ccccCCCC
Q 011765 8 QIAMF-PWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQ-FVKISLPHVDNLREN-AEATIDLP 84 (478)
Q Consensus 8 ~il~~-~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~-~~~i~~~~~~~l~~~-~~~~~~~~ 84 (478)
||+|. +..+.||+.|.++||++|++ ||+|+|+++......+...+ +. +..+| ++... .....+..
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~~------~~~~~~~p-----~~~~~~~~~~~~~~ 68 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKYG------FKVFETFP-----GIKLKGEDGKVNIV 68 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhhc------CcceeccC-----CceEeecCCcCcHH
Confidence 57775 45567999999999999999 99999999888655555544 33 33322 11100 00001111
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHhhccccccccccCCCCCC
Q 011765 85 YDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFGPSSVLINDSGDHLKT 164 (478)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (478)
... ...............+++++.+||+||+| +.+.+..+|+.+|||++.+..+.... .
T Consensus 69 ~~l-~~~~~~~~~~~~~~~~~l~~~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~~-----~-------------- 127 (321)
T TIGR00661 69 KTL-RNKEYSPKKAIRREINIIREYNPDLIISD-FEYSTVVAAKLLKIPVICISNQNYTR-----Y-------------- 127 (321)
T ss_pred HHH-HhhccccHHHHHHHHHHHHhcCCCEEEEC-CchHHHHHHHhcCCCEEEEecchhhc-----C--------------
Confidence 111 10001101223345678889999999999 67778899999999999886532210 0
Q ss_pred CCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHhhcCCCee-
Q 011765 165 PEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQLHRKPVI- 243 (478)
Q Consensus 165 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~~~~~~- 243 (478)
|.... ...+.. ..+ +......++...+..+..... ..|+...
T Consensus 128 -----------~~~~~-~~~~~~-~~~----------------~~~~~~~~~~~~~~~~~~~~~--------~~p~~~~~ 170 (321)
T TIGR00661 128 -----------PLKTD-LIVYPT-MAA----------------LRIFNERCERFIVPDYPFPYT--------ICPKIIKN 170 (321)
T ss_pred -----------Ccccc-hhHHHH-HHH----------------HHHhccccceEeeecCCCCCC--------CCcccccc
Confidence 00000 000000 000 001111223222222211110 0010000
Q ss_pred eeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCC
Q 011765 244 PVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTE 323 (478)
Q Consensus 244 ~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~ 323 (478)
.-+|.. ..+..+|... +++.|+|.+|+.. ...+++++++.+. +.+++..... .
T Consensus 171 ~~~~~~--------------~~~~~~~~~~--~~~~iLv~~g~~~------~~~l~~~l~~~~~-~~~i~~~~~~----~ 223 (321)
T TIGR00661 171 MEGPLI--------------RYDVDDVDNY--GEDYILVYIGFEY------RYKILELLGKIAN-VKFVCYSYEV----A 223 (321)
T ss_pred CCCccc--------------chhhhccccC--CCCcEEEECCcCC------HHHHHHHHHhCCC-eEEEEeCCCC----C
Confidence 001111 0112222222 3457777777744 2345667766553 2233222111 1
Q ss_pred CCCCChhhhhhcCCCcEEEeccCC--hhhhhcCCCceeeeeccChhhHHHHHHhCCcEecccccc--chhhHHHHHhhcC
Q 011765 324 PIELPDGFEERTRGRGVVYTSWAP--QLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYA--DQGLNAKLLEEKQ 399 (478)
Q Consensus 324 ~~~~p~~~~~~~~~~n~~~~~~vp--q~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~g 399 (478)
...++ +|+.+..|.| ..+.|+.+++ +|||||++|++||+++|+|+|++|... ||..||+.++++|
T Consensus 224 ~~~~~---------~~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g 292 (321)
T TIGR00661 224 KNSYN---------ENVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLG 292 (321)
T ss_pred ccccC---------CCEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCC
Confidence 12223 3888889997 3567777777 999999999999999999999999854 9999999999999
Q ss_pred eEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHH
Q 011765 400 IVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYR 435 (478)
Q Consensus 400 ~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~ 435 (478)
+|+.++..+ + ++.+++.++++ |+.|+
T Consensus 293 ~~~~l~~~~----~---~~~~~~~~~~~---~~~~~ 318 (321)
T TIGR00661 293 CGIALEYKE----L---RLLEAILDIRN---MKRYK 318 (321)
T ss_pred CEEEcChhh----H---HHHHHHHhccc---ccccc
Confidence 999998765 4 56666767777 55553
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.90 E-value=7.9e-21 Score=186.81 Aligned_cols=343 Identities=21% Similarity=0.173 Sum_probs=211.2
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc--cccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRN--IDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDL 83 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~--~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~ 83 (478)
+|||+|+..+..||...++.|++.|.++||+|++++.+.. .+..+..| +.++.++.+ .+.. ..
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~~g------~~~~~~~~~---~~~~------~~ 65 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPKAG------IEFHFIPSG---GLRR------KG 65 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccccCC------CcEEEEecc---CcCC------CC
Confidence 4899999988889999999999999999999999988653 22222233 666666521 1110 00
Q ss_pred ChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCC--cccHHHHHHHhCCCeEEEecchHHHHHhhccccccccccCCC
Q 011765 84 PYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFA--AYWLPARARELGIPSGFFSIFTAATLGYFGPSSVLINDSGDH 161 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~--~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (478)
............ .....+.+++++.+||+|++... ...+..++...++|++.....
T Consensus 66 ~~~~l~~~~~~~-~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~--------------------- 123 (357)
T PRK00726 66 SLANLKAPFKLL-KGVLQARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQN--------------------- 123 (357)
T ss_pred hHHHHHHHHHHH-HHHHHHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCC---------------------
Confidence 011111111111 12335677888899999999963 334556788889999854110
Q ss_pred CCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHhhcCCC
Q 011765 162 LKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQLHRKP 241 (478)
Q Consensus 162 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~~~~ 241 (478)
+.+. ...++. ...+|.++..+... +. ..-+.+
T Consensus 124 ------------~~~~---------~~~r~~-------------------~~~~d~ii~~~~~~-----~~---~~~~~~ 155 (357)
T PRK00726 124 ------------AVPG---------LANKLL-------------------ARFAKKVATAFPGA-----FP---EFFKPK 155 (357)
T ss_pred ------------CCcc---------HHHHHH-------------------HHHhchheECchhh-----hh---ccCCCC
Confidence 0000 000110 11223333222110 10 112346
Q ss_pred eeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHH-HHHHHHhCCC--CEEEEEecCCC
Q 011765 242 VIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTE-IALGLELSKL--PFFWVLKKRLG 318 (478)
Q Consensus 242 ~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~-~~~al~~~~~--~~i~~~~~~~~ 318 (478)
+.++|......... .. . ...-+...++.++|++..|+.. ...... +.+++.+... .+++.++...
T Consensus 156 i~vi~n~v~~~~~~-----~~-~--~~~~~~~~~~~~~i~~~gg~~~---~~~~~~~l~~a~~~~~~~~~~~~~~G~g~- 223 (357)
T PRK00726 156 AVVTGNPVREEILA-----LA-A--PPARLAGREGKPTLLVVGGSQG---ARVLNEAVPEALALLPEALQVIHQTGKGD- 223 (357)
T ss_pred EEEECCCCChHhhc-----cc-c--hhhhccCCCCCeEEEEECCcHh---HHHHHHHHHHHHHHhhhCcEEEEEcCCCc-
Confidence 78888443221110 00 0 0001111223446666555532 222222 3355554433 3344444321
Q ss_pred CCCCCCCCCChhhhhhcC-CCcEEEeccCC-hhhhhcCCCceeeeeccChhhHHHHHHhCCcEecccc----ccchhhHH
Q 011765 319 QADTEPIELPDGFEERTR-GRGVVYTSWAP-QLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTC----YADQGLNA 392 (478)
Q Consensus 319 ~~~~~~~~~p~~~~~~~~-~~n~~~~~~vp-q~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~----~~DQ~~na 392 (478)
. +.+.+... .-++.+..|+. ..++++.+++ +|+|+|.++++||+++|+|+|++|. ..+|..|+
T Consensus 224 --------~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~ 292 (357)
T PRK00726 224 --------L-EEVRAAYAAGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANA 292 (357)
T ss_pred --------H-HHHHHHhhcCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHH
Confidence 1 22222222 11377788884 4679988888 9999999999999999999999997 46899999
Q ss_pred HHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHH
Q 011765 393 KLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLK 463 (478)
Q Consensus 393 ~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~ 463 (478)
..+.+.|.|..++..+ ++++.|++++.++++ |+++++++.+-+....+..+..+.++.+++.++
T Consensus 293 ~~i~~~~~g~~~~~~~----~~~~~l~~~i~~ll~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 293 RALVDAGAALLIPQSD----LTPEKLAEKLLELLS---DPERLEAMAEAARALGKPDAAERLADLIEELAR 356 (357)
T ss_pred HHHHHCCCEEEEEccc----CCHHHHHHHHHHHHc---CHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHhh
Confidence 9999999999998876 789999999999999 899999999988888888877888887777654
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.86 E-value=5.3e-19 Score=173.43 Aligned_cols=332 Identities=21% Similarity=0.204 Sum_probs=199.0
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccc--cCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCCh
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNID--RLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPY 85 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~--~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~ 85 (478)
+|++...+..||....+.|++.|.++||+|++++...... ..... ++++..++... +.. ...
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~~~~------~~~~~~~~~~~---~~~------~~~- 64 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEARLVPKA------GIPLHTIPVGG---LRR------KGS- 64 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhccccc------CCceEEEEecC---cCC------CCh-
Confidence 5888888888999999999999999999999998754321 11111 26666665311 100 000
Q ss_pred hHHHHHHHHH--hhhhHHHHHHHhhcCCCEEEEcCC--cccHHHHHHHhCCCeEEEecchHHHHHhhccccccccccCCC
Q 011765 86 DEVKYLKQSF--DCLEEPMAKLLQSLAPDWLLFDFA--AYWLPARARELGIPSGFFSIFTAATLGYFGPSSVLINDSGDH 161 (478)
Q Consensus 86 ~~~~~~~~~~--~~~~~~l~~ll~~~~pD~vI~D~~--~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (478)
+..+...+ ......+.+++++.+||+|++... ..++..+|...|+|++.... .
T Consensus 65 --~~~~~~~~~~~~~~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~-~-------------------- 121 (350)
T cd03785 65 --LKKLKAPFKLLKGVLQARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQ-N-------------------- 121 (350)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCCEEEEcC-C--------------------
Confidence 11111111 112235667788899999998742 33456788899999985311 0
Q ss_pred CCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHhhcCCC
Q 011765 162 LKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQLHRKP 241 (478)
Q Consensus 162 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~~~~ 241 (478)
..+. . ...+ ....++.++..+-...+ . .-+.+
T Consensus 122 ------------~~~~-----~----~~~~-------------------~~~~~~~vi~~s~~~~~-----~---~~~~~ 153 (350)
T cd03785 122 ------------AVPG-----L----ANRL-------------------LARFADRVALSFPETAK-----Y---FPKDK 153 (350)
T ss_pred ------------CCcc-----H----HHHH-------------------HHHhhCEEEEcchhhhh-----c---CCCCc
Confidence 0000 0 0000 01224555554421111 1 11345
Q ss_pred eeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCH-HHHHHHHHHHHhCCCCEEEEEecCCCCC
Q 011765 242 VIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQ-EELTEIALGLELSKLPFFWVLKKRLGQA 320 (478)
Q Consensus 242 ~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~ 320 (478)
+.++|........ .. ... ...+...+++++|++..|+...... +.+...+..+.+.+..+++.++..
T Consensus 154 ~~~i~n~v~~~~~------~~-~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g---- 221 (350)
T cd03785 154 AVVTGNPVREEIL------AL-DRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKG---- 221 (350)
T ss_pred EEEECCCCchHHh------hh-hhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCc----
Confidence 7777743322110 00 011 2223333344466665665542111 222333444443334445555432
Q ss_pred CCCCCCCChhhhhhcC--CCcEEEeccC-ChhhhhcCCCceeeeeccChhhHHHHHHhCCcEecccc----ccchhhHHH
Q 011765 321 DTEPIELPDGFEERTR--GRGVVYTSWA-PQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTC----YADQGLNAK 393 (478)
Q Consensus 321 ~~~~~~~p~~~~~~~~--~~n~~~~~~v-pq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~----~~DQ~~na~ 393 (478)
.. +.+.+... .+|+.+..|+ +..++|+.+++ +|+++|.+|+.||+++|+|+|++|. ..+|..|+.
T Consensus 222 --~~----~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~ 293 (350)
T cd03785 222 --DL----EEVKKAYEELGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANAR 293 (350)
T ss_pred --cH----HHHHHHHhccCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHH
Confidence 11 22222221 3588888888 44678888888 9999999999999999999999985 468999999
Q ss_pred HHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHH
Q 011765 394 LLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDR 453 (478)
Q Consensus 394 ~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 453 (478)
.+.+.|+|..++..+ .+.+++.++|+++++ +++.++++.+-+....+..+.++
T Consensus 294 ~l~~~g~g~~v~~~~----~~~~~l~~~i~~ll~---~~~~~~~~~~~~~~~~~~~~~~~ 346 (350)
T cd03785 294 ALVKAGAAVLIPQEE----LTPERLAAALLELLS---DPERLKAMAEAARSLARPDAAER 346 (350)
T ss_pred HHHhCCCEEEEecCC----CCHHHHHHHHHHHhc---CHHHHHHHHHHHHhcCCCCHHHH
Confidence 999999999998765 689999999999999 78888777777766656553333
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.82 E-value=7.5e-18 Score=165.12 Aligned_cols=331 Identities=19% Similarity=0.208 Sum_probs=187.8
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCcc--ccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNI--DRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLP 84 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~--~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~ 84 (478)
|||+|+..+..||+.....||++|.++||+|++++.+... +.....| +.++.++. ..... ...
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~~~g------~~~~~i~~---~~~~~------~~~ 65 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPKAG------IEFYFIPV---GGLRR------KGS 65 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhcccccCC------CceEEEec---cCcCC------CCh
Confidence 6999999999999998889999999999999999864321 1112223 66666652 11000 001
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCc--ccHHHHHHHhCCCeEEEecchHHHHHhhccccccccccCCCC
Q 011765 85 YDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAA--YWLPARARELGIPSGFFSIFTAATLGYFGPSSVLINDSGDHL 162 (478)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~--~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (478)
...+........ ....+.+++++.+||+|++.... ..+..++..+++|++.... .
T Consensus 66 ~~~l~~~~~~~~-~~~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~-~--------------------- 122 (348)
T TIGR01133 66 FRLIKTPLKLLK-AVFQARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQ-N--------------------- 122 (348)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEEEECC-C---------------------
Confidence 111111111111 22356778899999999997532 2345678888999974311 0
Q ss_pred CCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHhhcCCCe
Q 011765 163 KTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQLHRKPV 242 (478)
Q Consensus 163 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~~~~~ 242 (478)
..+. . ..++. .+.+|.+++.+... .+.+ ..
T Consensus 123 -----------~~~~-----~----~~~~~-------------------~~~~d~ii~~~~~~---------~~~~--~~ 152 (348)
T TIGR01133 123 -----------AVPG-----L----TNKLL-------------------SRFAKKVLISFPGA---------KDHF--EA 152 (348)
T ss_pred -----------CCcc-----H----HHHHH-------------------HHHhCeeEECchhH---------hhcC--Cc
Confidence 0000 0 00000 12345444433111 0111 12
Q ss_pred eeec-cCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHH-HHHHHH---hCCCCEEEEEecCC
Q 011765 243 IPVG-QLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTE-IALGLE---LSKLPFFWVLKKRL 317 (478)
Q Consensus 243 ~~vG-p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~-~~~al~---~~~~~~i~~~~~~~ 317 (478)
.++| |+....... .. . ..++...+++++|.+..|+.. .+.+.. +.++++ ..+..++++.+..
T Consensus 153 ~~i~n~v~~~~~~~-----~~-~---~~~~~~~~~~~~i~~~gg~~~---~~~~~~~l~~a~~~l~~~~~~~~~~~g~~- 219 (348)
T TIGR01133 153 VLVGNPVRQEIRSL-----PV-P---RERFGLREGKPTILVLGGSQG---AKILNELVPKALAKLAEKGIQIVHQTGKN- 219 (348)
T ss_pred eEEcCCcCHHHhcc-----cc-h---hhhcCCCCCCeEEEEECCchh---HHHHHHHHHHHHHHHhhcCcEEEEECCcc-
Confidence 4555 332111100 00 0 112222233434444334433 222222 334443 3344555433321
Q ss_pred CCCCCCCCCCChhhhhhcCCCcE-EEeccC--ChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccc---cchhhH
Q 011765 318 GQADTEPIELPDGFEERTRGRGV-VYTSWA--PQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCY---ADQGLN 391 (478)
Q Consensus 318 ~~~~~~~~~~p~~~~~~~~~~n~-~~~~~v--pq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~---~DQ~~n 391 (478)
.. +.+.+.....++ .++.|. +..++++.+++ +|+++|.+++.||+++|+|+|++|.. .+|..|
T Consensus 220 --------~~-~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~ 288 (348)
T TIGR01133 220 --------DL-EKVKNVYQELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYN 288 (348)
T ss_pred --------hH-HHHHHHHhhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhH
Confidence 11 222222221121 122233 45678888888 99999988999999999999999863 478889
Q ss_pred HHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHH
Q 011765 392 AKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVD 456 (478)
Q Consensus 392 a~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 456 (478)
+..+.+.|.|..++..+ .+.+.|.++++++++ |+++++++.+-+....+.....+.++
T Consensus 289 ~~~i~~~~~G~~~~~~~----~~~~~l~~~i~~ll~---~~~~~~~~~~~~~~~~~~~~~~~i~~ 346 (348)
T TIGR01133 289 AKFLEDLGAGLVIRQKE----LLPEKLLEALLKLLL---DPANLEAMAEAARKLAKPDAAKRIAE 346 (348)
T ss_pred HHHHHHCCCEEEEeccc----CCHHHHHHHHHHHHc---CHHHHHHHHHHHHhcCCccHHHHHHh
Confidence 99999999999988765 689999999999999 88888877777766666664444443
No 35
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.80 E-value=1.2e-17 Score=152.38 Aligned_cols=340 Identities=19% Similarity=0.256 Sum_probs=202.9
Q ss_pred CCccEEEEecCC--CccCHHHHHHHHHHHHhC--CCeEEEEeCCCccccCCC-CCCCCCCCeEEEEecCCCCCCCCCCcc
Q 011765 4 NSKLQIAMFPWL--AFGHMIPWLELAKLIAQK--GHKIFFISTPRNIDRLPR-LPQNLASMIQFVKISLPHVDNLRENAE 78 (478)
Q Consensus 4 ~~~~~il~~~~~--~~gH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~-~g~~~~~~i~~~~i~~~~~~~l~~~~~ 78 (478)
++.+||+|++.- +.||+.+++.||++|++. |.+|++++......-..- .| ++|+.+|.-. ....+..
T Consensus 7 ~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~~g------Vd~V~LPsl~--k~~~G~~ 78 (400)
T COG4671 7 SKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGPAG------VDFVKLPSLI--KGDNGEY 78 (400)
T ss_pred hccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCccc------CceEecCceE--ecCCCce
Confidence 345699999887 559999999999999998 999999998876654443 44 9999998211 1111221
Q ss_pred ccCCCChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHhhcccccccccc
Q 011765 79 ATIDLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFGPSSVLINDS 158 (478)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (478)
...+...+ ..+....-...+...++..+||++|+|.+-+ |+. -+.+ |. +.+.. ..
T Consensus 79 ~~~d~~~~----l~e~~~~Rs~lil~t~~~fkPDi~IVd~~P~-Glr-~EL~--pt----------L~yl~-~~------ 133 (400)
T COG4671 79 GLVDLDGD----LEETKKLRSQLILSTAETFKPDIFIVDKFPF-GLR-FELL--PT----------LEYLK-TT------ 133 (400)
T ss_pred eeeecCCC----HHHHHHHHHHHHHHHHHhcCCCEEEEecccc-chh-hhhh--HH----------HHHHh-hc------
Confidence 11121111 2222223334556677888999999996544 311 1111 00 00000 00
Q ss_pred CCCCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHH-HHHhh
Q 011765 159 GDHLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLK-LLEQL 237 (478)
Q Consensus 159 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~-~~~~~ 237 (478)
. +...+- ++++..........|+........-+--|.+.+...+.+..+... .....
T Consensus 134 -------------~------t~~vL~---lr~i~D~p~~~~~~w~~~~~~~~I~r~yD~V~v~GdP~f~d~~~~~~~~~~ 191 (400)
T COG4671 134 -------------G------TRLVLG---LRSIRDIPQELEADWRRAETVRLINRFYDLVLVYGDPDFYDPLTEFPFAPA 191 (400)
T ss_pred -------------C------Ccceee---hHhhhhchhhhccchhhhHHHHHHHHhheEEEEecCccccChhhcCCccHh
Confidence 0 000000 011111111111111111111111122355555554444322110 11233
Q ss_pred cCCCeeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHh-CCCC--EEEEEe
Q 011765 238 HRKPVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLEL-SKLP--FFWVLK 314 (478)
Q Consensus 238 ~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~-~~~~--~i~~~~ 314 (478)
...++.|+|.+....+.. ..++ . ..+++..|+||.|... ...+.+...++|... .+.+ ++.+++
T Consensus 192 i~~k~~ytG~vq~~~~~~-----~~p~------~-~~pE~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l~~~~~ivtG 258 (400)
T COG4671 192 IRAKMRYTGFVQRSLPHL-----PLPP------H-EAPEGFDILVSVGGGA-DGAELIETALAAAQLLAGLNHKWLIVTG 258 (400)
T ss_pred hhhheeEeEEeeccCcCC-----CCCC------c-CCCccceEEEecCCCh-hhHHHHHHHHHHhhhCCCCCcceEEEeC
Confidence 345799999883221110 1111 1 1144558999988765 467888888877654 3333 555554
Q ss_pred cCCCCCCCCCCCCChhhhhhc-----CCCcEEEeccCCh-hhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccc---
Q 011765 315 KRLGQADTEPIELPDGFEERT-----RGRGVVYTSWAPQ-LAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCY--- 385 (478)
Q Consensus 315 ~~~~~~~~~~~~~p~~~~~~~-----~~~n~~~~~~vpq-~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~--- 385 (478)
. ..|.....+. +.+++.+..|-.+ ..++..|+. +|+-||+||++|-|++|+|.+++|..
T Consensus 259 P----------~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~~p~ 326 (400)
T COG4671 259 P----------FMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRAAPR 326 (400)
T ss_pred C----------CCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEeccCCCc
Confidence 3 3444333332 2368888888766 568877777 99999999999999999999999984
Q ss_pred cchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhc
Q 011765 386 ADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLV 427 (478)
Q Consensus 386 ~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~ 427 (478)
.+|-.-|+|++++|+.-++...+ +++..++++|...++
T Consensus 327 eEQliRA~Rl~~LGL~dvL~pe~----lt~~~La~al~~~l~ 364 (400)
T COG4671 327 EEQLIRAQRLEELGLVDVLLPEN----LTPQNLADALKAALA 364 (400)
T ss_pred HHHHHHHHHHHhcCcceeeCccc----CChHHHHHHHHhccc
Confidence 49999999999999999998888 999999999999998
No 36
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.79 E-value=1.9e-17 Score=164.15 Aligned_cols=352 Identities=16% Similarity=0.134 Sum_probs=199.7
Q ss_pred CccEEEEecCCCc-cCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeE--E---EEecCCCCCCCCCCcc
Q 011765 5 SKLQIAMFPWLAF-GHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQ--F---VKISLPHVDNLRENAE 78 (478)
Q Consensus 5 ~~~~il~~~~~~~-gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~--~---~~i~~~~~~~l~~~~~ 78 (478)
+.||||+++...- ||..+..+|+++|.++||+|+++++..... ..... ..+. | ...+ ..+..-..
T Consensus 3 ~~~rili~t~~~G~GH~~~a~al~~~l~~~g~~~~~~~d~~~~~-~~~~~----~~~~~~y~~~~~~~----~~~~~~~~ 73 (380)
T PRK13609 3 KNPKVLILTAHYGNGHVQVAKTLEQTFRQKGIKDVIVCDLFGES-HPVIT----EITKYLYLKSYTIG----KELYRLFY 73 (380)
T ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHHHhcCCCcEEEEEhHHhc-chHHH----HHHHHHHHHHHHHh----HHHHHHHH
Confidence 4679999877754 999999999999999999977765543210 00000 0000 0 0000 00000000
Q ss_pred ccCCCChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcccHH--HHHHHhCCCeEEEecchHHHHHhhcccccccc
Q 011765 79 ATIDLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWLP--ARARELGIPSGFFSIFTAATLGYFGPSSVLIN 156 (478)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~--~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~ 156 (478)
......... ..+..........+.+++++.+||+||++.-.+... ..+..++||++.+.+.. . .
T Consensus 74 ~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~~~~~~~~~~~~ip~~~~~td~----~--~------- 139 (380)
T PRK13609 74 YGVEKIYDK-KIFSWYANFGRKRLKLLLQAEKPDIVINTFPIIAVPELKKQTGISIPTYNVLTDF----C--L------- 139 (380)
T ss_pred hccCcccch-HHHHHHHHHHHHHHHHHHHHhCcCEEEEcChHHHHHHHHHhcCCCCCeEEEeCCC----C--C-------
Confidence 000000000 011111122246788999999999999984332222 22334568877543200 0 0
Q ss_pred ccCCCCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHh
Q 011765 157 DSGDHLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQ 236 (478)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~ 236 (478)
+.. | ..+.+|.+++.+ ....+.+..
T Consensus 140 --------------~~~-----------------~-------------------~~~~ad~i~~~s-----~~~~~~l~~ 164 (380)
T PRK13609 140 --------------HKI-----------------W-------------------VHREVDRYFVAT-----DHVKKVLVD 164 (380)
T ss_pred --------------Ccc-----------------c-------------------ccCCCCEEEECC-----HHHHHHHHH
Confidence 000 0 022456666655 222222222
Q ss_pred h-cC-CCeeeec-cCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhC-CCCEEEE
Q 011765 237 L-HR-KPVIPVG-QLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELS-KLPFFWV 312 (478)
Q Consensus 237 ~-~~-~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~i~~ 312 (478)
. .+ .++..+| |+...... ......+..-+.-.+++++|++..|+.... ..+..+++++.+. +.+++++
T Consensus 165 ~gi~~~ki~v~G~p~~~~f~~------~~~~~~~~~~~~l~~~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv 236 (380)
T PRK13609 165 IGVPPEQVVETGIPIRSSFEL------KINPDIIYNKYQLCPNKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVV 236 (380)
T ss_pred cCCChhHEEEECcccChHHcC------cCCHHHHHHHcCCCCCCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEE
Confidence 1 12 2466777 55322111 111222333233334456788877876532 2345566666543 4556655
Q ss_pred EecCCCCCCCCCCCCChhhhhhc--CCCcEEEeccCCh-hhhhcCCCceeeeeccChhhHHHHHHhCCcEecc-ccccch
Q 011765 313 LKKRLGQADTEPIELPDGFEERT--RGRGVVYTSWAPQ-LAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVL-TCYADQ 388 (478)
Q Consensus 313 ~~~~~~~~~~~~~~~p~~~~~~~--~~~n~~~~~~vpq-~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~-P~~~DQ 388 (478)
.+.+. .+-+.+.+.. ..+++.+..|+++ .++++.+++ +|+..|..|+.||+++|+|+|+. |..+.|
T Consensus 237 ~G~~~--------~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~ 306 (380)
T PRK13609 237 CGKNE--------ALKQSLEDLQETNPDALKVFGYVENIDELFRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQE 306 (380)
T ss_pred eCCCH--------HHHHHHHHHHhcCCCcEEEEechhhHHHHHHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcc
Confidence 54220 0111121111 1247888899987 468888888 99999988999999999999985 666777
Q ss_pred hhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHH
Q 011765 389 GLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLK 463 (478)
Q Consensus 389 ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~ 463 (478)
..|+..+.+.|+|+.. -+.+++.++|.++++ |++.++++.+-...+.+..+.++.++.+++.+.
T Consensus 307 ~~n~~~~~~~G~~~~~--------~~~~~l~~~i~~ll~---~~~~~~~m~~~~~~~~~~~s~~~i~~~i~~~~~ 370 (380)
T PRK13609 307 KENAMYFERKGAAVVI--------RDDEEVFAKTEALLQ---DDMKLLQMKEAMKSLYLPEPADHIVDDILAENH 370 (380)
T ss_pred hHHHHHHHhCCcEEEE--------CCHHHHHHHHHHHHC---CHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhh
Confidence 8999999999998753 277899999999999 787777777666666666666677777766553
No 37
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.78 E-value=1.4e-17 Score=164.25 Aligned_cols=351 Identities=16% Similarity=0.164 Sum_probs=201.4
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChh
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYD 86 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~ 86 (478)
.||+|+..+..||++|. +|+++|+++|++|+|++.... .+++.|-. ..+.+..++. .++ .+
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g~~--~~~~~~~l~v---~G~-----------~~ 66 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEGCE--VLYSMEELSV---MGL-----------RE 66 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCcCc--cccChHHhhh---ccH-----------HH
Confidence 47888888888999999 999999999999999986632 23343300 0122222220 010 01
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhcCCCEEEE-cCCcccHHH--HHHHhCCCeEEEecchHHHHHhhccccccccccCCCCC
Q 011765 87 EVKYLKQSFDCLEEPMAKLLQSLAPDWLLF-DFAAYWLPA--RARELGIPSGFFSIFTAATLGYFGPSSVLINDSGDHLK 163 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~-D~~~~~~~~--~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (478)
.+..+..... ......+++++.+||+||. |........ +|+.+|||++...+ +...+
T Consensus 67 ~l~~~~~~~~-~~~~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~--P~~wa----------------- 126 (385)
T TIGR00215 67 VLGRLGRLLK-IRKEVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYIS--PQVWA----------------- 126 (385)
T ss_pred HHHHHHHHHH-HHHHHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeC--CcHhh-----------------
Confidence 2222222222 2337778889999999996 532323233 88999999996532 00000
Q ss_pred CCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHhhcCCCee
Q 011765 164 TPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQLHRKPVI 243 (478)
Q Consensus 164 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~~~~~~ 243 (478)
|-. .+ .....+.+|.++... ..+.+.+ . ....+..
T Consensus 127 ----------w~~------~~-----------------------~r~l~~~~d~v~~~~--~~e~~~~---~-~~g~~~~ 161 (385)
T TIGR00215 127 ----------WRK------WR-----------------------AKKIEKATDFLLAIL--PFEKAFY---Q-KKNVPCR 161 (385)
T ss_pred ----------cCc------ch-----------------------HHHHHHHHhHhhccC--CCcHHHH---H-hcCCCEE
Confidence 000 00 000011233222222 1122211 1 1223577
Q ss_pred eec-cCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhC-----CCCEEEEEecCC
Q 011765 244 PVG-QLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELS-----KLPFFWVLKKRL 317 (478)
Q Consensus 244 ~vG-p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~ 317 (478)
+|| |+....... .....+..+-+.-.+++++|.+-.||....-......+++++..+ +.++++......
T Consensus 162 ~vGnPv~~~~~~~-----~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~ 236 (385)
T TIGR00215 162 FVGHPLLDAIPLY-----KPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFK 236 (385)
T ss_pred EECCchhhhcccc-----CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCch
Confidence 888 554322110 011223333334444567888877876642123344455544332 234544433211
Q ss_pred CCCCCCCCCCChhhhhhcC-CCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEecc----cccc------
Q 011765 318 GQADTEPIELPDGFEERTR-GRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVL----TCYA------ 386 (478)
Q Consensus 318 ~~~~~~~~~~p~~~~~~~~-~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~----P~~~------ 386 (478)
. ...+ +.+.+... ...+....+ +..++++.+++ +|+-.|..|+ |++++|+|+|++ |+..
T Consensus 237 ~-----~~~~-~~~~~~~~~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~ 306 (385)
T TIGR00215 237 R-----RLQF-EQIKAEYGPDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRL 306 (385)
T ss_pred h-----HHHH-HHHHHHhCCCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHH
Confidence 0 0000 11111111 112332222 33568888888 9999999988 999999999999 8642
Q ss_pred ---chhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhccc-----chHHHHHHHHHHHHHhcccCChHHHHHHH
Q 011765 387 ---DQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEE-----KGQIYRDKAKEMKGLFGDKGRHDRYVDNF 458 (478)
Q Consensus 387 ---DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~i 458 (478)
.|..|+..+...++...+...+ +|++.|.+++.++|++. ..+.+++..+++.+.+.+.+.+.++++.|
T Consensus 307 ~~~~~~~~~nil~~~~~~pel~q~~----~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i 382 (385)
T TIGR00215 307 VKTDYISLPNILANRLLVPELLQEE----CTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRIYCNADSERAAQAV 382 (385)
T ss_pred HcCCeeeccHHhcCCccchhhcCCC----CCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 3888999999999999998777 89999999999999832 22467777788888887777778888877
Q ss_pred HH
Q 011765 459 LN 460 (478)
Q Consensus 459 ~~ 460 (478)
++
T Consensus 383 ~~ 384 (385)
T TIGR00215 383 LE 384 (385)
T ss_pred hh
Confidence 65
No 38
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.74 E-value=9.3e-16 Score=152.10 Aligned_cols=168 Identities=13% Similarity=0.145 Sum_probs=118.7
Q ss_pred CCCceEEEEeCcccCCCHHHHHHHHHHH-Hh-CCCCEEEEEecCCCCCCCCCCCCChhhhhhc-CCCcEEEeccCCh-hh
Q 011765 275 EKGSVVYVAFGSEAKPSQEELTEIALGL-EL-SKLPFFWVLKKRLGQADTEPIELPDGFEERT-RGRGVVYTSWAPQ-LA 350 (478)
Q Consensus 275 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al-~~-~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~-~~~n~~~~~~vpq-~~ 350 (478)
+++++|+++.|+... ...+..+++++ +. .+.+++++.+.+ ..+-+.+.+.. ..+++.+..|+++ .+
T Consensus 200 ~~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~--------~~l~~~l~~~~~~~~~v~~~G~~~~~~~ 269 (391)
T PRK13608 200 PDKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKS--------KELKRSLTAKFKSNENVLILGYTKHMNE 269 (391)
T ss_pred CCCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCC--------HHHHHHHHHHhccCCCeEEEeccchHHH
Confidence 456688888888762 23344445553 22 234555554422 01111222222 2347888889876 45
Q ss_pred hhcCCCceeeeeccChhhHHHHHHhCCcEecc-ccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhccc
Q 011765 351 ILAHDSVGGFLTHAGWSSVVEALQFGMPLIVL-TCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEE 429 (478)
Q Consensus 351 vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~-P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~ 429 (478)
+++.+++ +|+..|..|+.||+++|+|+|++ |..+.|..|+..+.+.|+|+... +.+++.++|.++++
T Consensus 270 ~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g~~~~--------~~~~l~~~i~~ll~-- 337 (391)
T PRK13608 270 WMASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFGKIAD--------TPEEAIKIVASLTN-- 337 (391)
T ss_pred HHHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcEEEeC--------CHHHHHHHHHHHhc--
Confidence 8888888 99998888999999999999998 66667789999999999998742 77889999999999
Q ss_pred chHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHhc
Q 011765 430 KGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLKNH 465 (478)
Q Consensus 430 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (478)
|++.++++.+-.....+..+.++.++.+++.+...
T Consensus 338 -~~~~~~~m~~~~~~~~~~~s~~~i~~~l~~l~~~~ 372 (391)
T PRK13608 338 -GNEQLTNMISTMEQDKIKYATQTICRDLLDLIGHS 372 (391)
T ss_pred -CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhh
Confidence 77777777766666666677777888888877543
No 39
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.72 E-value=6.2e-16 Score=145.50 Aligned_cols=254 Identities=15% Similarity=0.163 Sum_probs=150.9
Q ss_pred CCccCHHHHHHHHHHHHhCCCeEEEEeCCCcc---ccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChhHHHHH
Q 011765 15 LAFGHMIPWLELAKLIAQKGHKIFFISTPRNI---DRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYDEVKYL 91 (478)
Q Consensus 15 ~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~---~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~ 91 (478)
-+.||+.+++.||++|.++||+|+|++..... +.+.+.| +.+..++ +. .+
T Consensus 12 iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~~g------~~v~~~~----~~--~~--------------- 64 (279)
T TIGR03590 12 IGLGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLLLSAG------FPVYELP----DE--SS--------------- 64 (279)
T ss_pred ccccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHcC------CeEEEec----CC--Cc---------------
Confidence 37799999999999999999999999987544 3344555 7777775 21 00
Q ss_pred HHHHhhhhHHHHHHHhhcCCCEEEEcCCcccHHH--HHHHhCCCeEEEecchHHHHHhhccccccccccCCCCCCCCccc
Q 011765 92 KQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWLPA--RARELGIPSGFFSIFTAATLGYFGPSSVLINDSGDHLKTPEDYT 169 (478)
Q Consensus 92 ~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~--~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (478)
...-...+.+++++.+||+||.|.+...... ..+..+.+++.+--..
T Consensus 65 ---~~~d~~~~~~~l~~~~~d~vV~D~y~~~~~~~~~~k~~~~~l~~iDD~~---------------------------- 113 (279)
T TIGR03590 65 ---RYDDALELINLLEEEKFDILIVDHYGLDADWEKLIKEFGRKILVIDDLA---------------------------- 113 (279)
T ss_pred ---hhhhHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHhCCeEEEEecCC----------------------------
Confidence 0112224667778889999999987654432 2333455555541100
Q ss_pred CCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHhhcC-CCeeeecc-
Q 011765 170 RVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQLHR-KPVIPVGQ- 247 (478)
Q Consensus 170 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~~-~~~~~vGp- 247 (478)
.....+|.++..+.. .+. ..+. ...| ......||
T Consensus 114 ----------------------------------------~~~~~~D~vin~~~~-~~~--~~y~-~~~~~~~~~l~G~~ 149 (279)
T TIGR03590 114 ----------------------------------------DRPHDCDLLLDQNLG-ADA--SDYQ-GLVPANCRLLLGPS 149 (279)
T ss_pred ----------------------------------------CCCcCCCEEEeCCCC-cCH--hHhc-ccCcCCCeEEecch
Confidence 000133433332221 111 1110 1011 12456665
Q ss_pred --CCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhC--CCCEEEEEecCCCCCCCC
Q 011765 248 --LPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELS--KLPFFWVLKKRLGQADTE 323 (478)
Q Consensus 248 --~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~ 323 (478)
+..+. ...........++.+.|+|++|...... ....+++++.+. +.++.++++..
T Consensus 150 Y~~lr~e-----------F~~~~~~~~~~~~~~~iLi~~GG~d~~~--~~~~~l~~l~~~~~~~~i~vv~G~~------- 209 (279)
T TIGR03590 150 YALLREE-----------FYQLATANKRRKPLRRVLVSFGGADPDN--LTLKLLSALAESQINISITLVTGSS------- 209 (279)
T ss_pred HHhhhHH-----------HHHhhHhhhcccccCeEEEEeCCcCCcC--HHHHHHHHHhccccCceEEEEECCC-------
Confidence 22110 0000000001112357899999665322 445566777654 34566666543
Q ss_pred CCCCChhhhhhc-CCCcEEEeccCChh-hhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhhHHHH
Q 011765 324 PIELPDGFEERT-RGRGVVYTSWAPQL-AILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAKL 394 (478)
Q Consensus 324 ~~~~p~~~~~~~-~~~n~~~~~~vpq~-~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~ 394 (478)
....+.+.+.. ..+|+.+..|+++. +++..+++ +||+|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 210 -~~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 210 -NPNLDELKKFAKEYPNIILFIDVENMAELMNEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred -CcCHHHHHHHHHhCCCEEEEeCHHHHHHHHHHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 11222333222 23588888999885 78998998 999999 9999999999999999999999999985
No 40
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.70 E-value=6.5e-15 Score=145.84 Aligned_cols=111 Identities=14% Similarity=0.094 Sum_probs=90.4
Q ss_pred CcEEEeccCCh-hhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchh-hHHHHHhhcCeEEEeeccCCCCcccH
Q 011765 338 RGVVYTSWAPQ-LAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQG-LNAKLLEEKQIVELIPRDEGDGFFTR 415 (478)
Q Consensus 338 ~n~~~~~~vpq-~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~-~na~~v~~~g~G~~l~~~~~~~~~~~ 415 (478)
.++.+..|+++ .+++..+++ +|+.+|-+|+.||+++|+|+|+.+....|. .|+..+.+.|.|... . ++
T Consensus 265 ~~v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~g~g~~~---~-----~~ 334 (382)
T PLN02605 265 IPVKVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDNGFGAFS---E-----SP 334 (382)
T ss_pred CCeEEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhCCceeec---C-----CH
Confidence 46788889886 558888888 999999999999999999999998776775 799999999999864 3 88
Q ss_pred HHHHHHHHHHhcccch-HHHHHHHHHHHHHhcccCChHHHHHHHHHH
Q 011765 416 NSVAESLRLVLVEEKG-QIYRDKAKEMKGLFGDKGRHDRYVDNFLNY 461 (478)
Q Consensus 416 ~~l~~~i~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~ 461 (478)
+.|.++|.++++ + ++.++++...+.......++.+.++.+.+.
T Consensus 335 ~~la~~i~~ll~---~~~~~~~~m~~~~~~~~~~~a~~~i~~~l~~~ 378 (382)
T PLN02605 335 KEIARIVAEWFG---DKSDELEAMSENALKLARPEAVFDIVHDLHEL 378 (382)
T ss_pred HHHHHHHHHHHc---CCHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 999999999998 5 777777777777777777556666655554
No 41
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.68 E-value=5.6e-15 Score=146.58 Aligned_cols=346 Identities=18% Similarity=0.194 Sum_probs=176.9
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCCh
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPY 85 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~ 85 (478)
+|||+|+..+.-||+.|.. ++++|+++++++.+++.... .++..+- ...+.++.++ .. .. .
T Consensus 1 ~~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~l~--------~~-----g~-~ 61 (380)
T PRK00025 1 PLRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGP--RMQAAGC--ESLFDMEELA--------VM-----GL-V 61 (380)
T ss_pred CceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccH--HHHhCCC--ccccCHHHhh--------hc-----cH-H
Confidence 5799999999999999999 99999998877777764331 1222220 0012222221 10 00 1
Q ss_pred hHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCC-cccH--HHHHHHhCCCeEEEecchHHHHHhhccccccccccCCCC
Q 011765 86 DEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFA-AYWL--PARARELGIPSGFFSIFTAATLGYFGPSSVLINDSGDHL 162 (478)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~-~~~~--~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (478)
+.+..+..... ....+.+++++.+||+|+.-.+ ..+. ...|..+|||++...... .
T Consensus 62 ~~~~~~~~~~~-~~~~~~~~l~~~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~-~------------------- 120 (380)
T PRK00025 62 EVLPRLPRLLK-IRRRLKRRLLAEPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPS-V------------------- 120 (380)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCc-h-------------------
Confidence 11112111122 2346778889999999976422 2233 334678899988652200 0
Q ss_pred CCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHhhcCCCe
Q 011765 163 KTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQLHRKPV 242 (478)
Q Consensus 163 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~~~~~ 242 (478)
-.+.+. ..+. ..+.+|.+++.+-. +.. .... ..-++
T Consensus 121 ---------~~~~~~--------------------------~~~~---~~~~~d~i~~~~~~--~~~---~~~~-~g~~~ 156 (380)
T PRK00025 121 ---------WAWRQG--------------------------RAFK---IAKATDHVLALFPF--EAA---FYDK-LGVPV 156 (380)
T ss_pred ---------hhcCch--------------------------HHHH---HHHHHhhheeCCcc--CHH---HHHh-cCCCe
Confidence 000000 0000 12233444443321 111 1111 22237
Q ss_pred eeec-cCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhC-----CCCEEEEEecC
Q 011765 243 IPVG-QLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELS-----KLPFFWVLKKR 316 (478)
Q Consensus 243 ~~vG-p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~ 316 (478)
.++| |+...... .....+....+.-.+++++|++..||...........++++++.+ +.+++++.+..
T Consensus 157 ~~~G~p~~~~~~~------~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~ 230 (380)
T PRK00025 157 TFVGHPLADAIPL------LPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNP 230 (380)
T ss_pred EEECcCHHHhccc------ccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCh
Confidence 7788 44322110 111223333343333455666666764431112234445544321 34566654311
Q ss_pred CCCCCCCCCCCChhhhhhcCC---CcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEecccccc-------
Q 011765 317 LGQADTEPIELPDGFEERTRG---RGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYA------- 386 (478)
Q Consensus 317 ~~~~~~~~~~~p~~~~~~~~~---~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~------- 386 (478)
. .-+.+.+.... -++.+.. -.-.++++.+++ +|+.+|.+++ ||+++|+|+|++|-..
T Consensus 231 ~---------~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~ 297 (380)
T PRK00025 231 K---------RREQIEEALAEYAGLEVTLLD-GQKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIA 297 (380)
T ss_pred h---------hHHHHHHHHhhcCCCCeEEEc-ccHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHH
Confidence 1 00112221111 1333322 123567888888 9999999888 9999999999985321
Q ss_pred -chhhH-----HHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHH----HHHHhcccCChHHHHH
Q 011765 387 -DQGLN-----AKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKE----MKGLFGDKGRHDRYVD 456 (478)
Q Consensus 387 -DQ~~n-----a~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~ 456 (478)
.|..| +..+.+.+++..+.... .+++.|.+++.++++ |++.++++.+ +.+.+ ..+.+.+.++
T Consensus 298 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~l~~~i~~ll~---~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~ 369 (380)
T PRK00025 298 KRLVKVPYVSLPNLLAGRELVPELLQEE----ATPEKLARALLPLLA---DGARRQALLEGFTELHQQL-RCGADERAAQ 369 (380)
T ss_pred HHHHcCCeeehHHHhcCCCcchhhcCCC----CCHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHh-CCCHHHHHHH
Confidence 22222 23333334444444444 689999999999999 7766654444 44555 5565566666
Q ss_pred HHHHHH
Q 011765 457 NFLNYL 462 (478)
Q Consensus 457 ~i~~~~ 462 (478)
.+.+.+
T Consensus 370 ~i~~~~ 375 (380)
T PRK00025 370 AVLELL 375 (380)
T ss_pred HHHHHh
Confidence 665544
No 42
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.59 E-value=1.4e-12 Score=128.94 Aligned_cols=351 Identities=15% Similarity=0.075 Sum_probs=190.2
Q ss_pred HHHHHHHHHHHh--CCCeEE---EEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChhHHHHHHH-H
Q 011765 21 IPWLELAKLIAQ--KGHKIF---FISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYDEVKYLKQ-S 94 (478)
Q Consensus 21 ~p~l~La~~L~~--rGh~Vt---~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~ 94 (478)
.-.++||++|++ .|++|. |+++..-.+. .. +.... |+ ..++.+.-.. ......+..+.. .
T Consensus 11 ~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~---~~------ip~~g-~~---~~~~sgg~~~-~~~~~~~~~~~~gl 76 (396)
T TIGR03492 11 LIAARIAKALLQLSPDLNLEALPLVGEGRAYQN---LG------IPIIG-PT---KELPSGGFSY-QSLRGLLRDLRAGL 76 (396)
T ss_pred HHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhh---CC------CceeC-CC---CCCCCCCccC-CCHHHHHHHHHhhH
Confidence 346788999998 699999 9998876541 11 22211 21 2333332111 111122222222 2
Q ss_pred HhhhhHHHHHHHhhc--CCCEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHhhccccccccccCCCCCCCCcccCCC
Q 011765 95 FDCLEEPMAKLLQSL--APDWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFGPSSVLINDSGDHLKTPEDYTRVP 172 (478)
Q Consensus 95 ~~~~~~~l~~ll~~~--~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (478)
..... .-..+++++ +||+||+-.=.. +..+|..+|+|++.+.+.-...... +.+
T Consensus 77 ~~~~~-~~~~~~~~~~~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~~~~----------------------~~~ 132 (396)
T TIGR03492 77 VGLTL-GQWRALRKWAKKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDYYWE----------------------SGP 132 (396)
T ss_pred HHHHH-HHHHHHHHHhhcCCEEEEECcHH-HHHHHHHcCCCceEEEeeccceeec----------------------CCC
Confidence 22222 334456677 999998653222 7888999999999865411100000 000
Q ss_pred cccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHhhcCCCeeeec-cCCCC
Q 011765 173 NWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQLHRKPVIPVG-QLPTT 251 (478)
Q Consensus 173 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~~~~~~~vG-p~~~~ 251 (478)
.+ +.. . .++.+. +..+.+..+..-..+.++.+++.. +...+.+.. .+.++.+|| |+...
T Consensus 133 ~~-~~~-~------~~~~~~------G~~~~p~e~n~l~~~~a~~v~~~~-----~~t~~~l~~-~g~k~~~vGnPv~d~ 192 (396)
T TIGR03492 133 RR-SPS-D------EYHRLE------GSLYLPWERWLMRSRRCLAVFVRD-----RLTARDLRR-QGVRASYLGNPMMDG 192 (396)
T ss_pred CC-ccc-h------hhhccC------CCccCHHHHHHhhchhhCEEeCCC-----HHHHHHHHH-CCCeEEEeCcCHHhc
Confidence 00 000 0 000000 000000001111234456555544 222223322 234799999 87754
Q ss_pred CCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhC----CCCEEEEEecCCCCCCCCCCCC
Q 011765 252 TGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELS----KLPFFWVLKKRLGQADTEPIEL 327 (478)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~~~~~~~~~~~ 327 (478)
.... ... .-.+++++|.+-.||-...-...+..++++++.+ +..|++.+.+.... ..+
T Consensus 193 l~~~--------~~~-----~l~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~-----~~~ 254 (396)
T TIGR03492 193 LEPP--------ERK-----PLLTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLSL-----EKL 254 (396)
T ss_pred Cccc--------ccc-----ccCCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCCH-----HHH
Confidence 3211 000 1122346888888887543334444566665443 56677776433110 000
Q ss_pred Chhhhh-h-------------cCCCcEEEeccCCh-hhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhhHH
Q 011765 328 PDGFEE-R-------------TRGRGVVYTSWAPQ-LAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNA 392 (478)
Q Consensus 328 p~~~~~-~-------------~~~~n~~~~~~vpq-~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na 392 (478)
-..+.+ . ...+++.+..+..+ .++++.+++ +||-.|..| .|+...|+|+|++|....|. ||
T Consensus 255 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na 330 (396)
T TIGR03492 255 QAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TY 330 (396)
T ss_pred HHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HH
Confidence 000000 0 01123445445433 668888888 999999777 99999999999999877786 98
Q ss_pred HHHhhc----CeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHH-HHHHHhcccCChHHHHHHHHH
Q 011765 393 KLLEEK----QIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAK-EMKGLFGDKGRHDRYVDNFLN 460 (478)
Q Consensus 393 ~~v~~~----g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~i~~ 460 (478)
...++. |.++.+... +.+.|.+++.++++ |++.++++. ..++.+.+.+.+.+.++.+.+
T Consensus 331 ~~~~~~~~l~g~~~~l~~~------~~~~l~~~l~~ll~---d~~~~~~~~~~~~~~lg~~~a~~~ia~~i~~ 394 (396)
T TIGR03492 331 GFAEAQSRLLGGSVFLASK------NPEQAAQVVRQLLA---DPELLERCRRNGQERMGPPGASARIAESILK 394 (396)
T ss_pred HHHHhhHhhcCCEEecCCC------CHHHHHHHHHHHHc---CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 877764 767776543 56999999999999 777776666 566667677766677666655
No 43
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.55 E-value=2.7e-16 Score=136.86 Aligned_cols=140 Identities=20% Similarity=0.232 Sum_probs=97.1
Q ss_pred eEEEEeCcccCCCH-HHHHHHHHHHHh--CCCCEEEEEecCCCCCCCCCCCCChhhhhhcC--CCcEEEeccCC-hhhhh
Q 011765 279 VVYVAFGSEAKPSQ-EELTEIALGLEL--SKLPFFWVLKKRLGQADTEPIELPDGFEERTR--GRGVVYTSWAP-QLAIL 352 (478)
Q Consensus 279 ~v~vs~Gs~~~~~~-~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~--~~n~~~~~~vp-q~~vL 352 (478)
+|+|+.||.....- +.+..+...+.. ...+++++++.... ........ ..++.+.+|++ ..+++
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~----------~~~~~~~~~~~~~v~~~~~~~~m~~~m 70 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNY----------EELKIKVENFNPNVKVFGFVDNMAELM 70 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCEC----------HHHCCCHCCTTCCCEEECSSSSHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcH----------HHHHHHHhccCCcEEEEechhhHHHHH
Confidence 48999998763111 122223333332 24677777764311 11111111 14789999999 67799
Q ss_pred cCCCceeeeeccChhhHHHHHHhCCcEecccccc----chhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcc
Q 011765 353 AHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYA----DQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVE 428 (478)
Q Consensus 353 ~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~----DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~ 428 (478)
..+++ +|||||.||++|++++|+|+|++|... +|..||..+++.|+|..+.... .+.+.|.++|.+++.
T Consensus 71 ~~aDl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~~----~~~~~L~~~i~~l~~- 143 (167)
T PF04101_consen 71 AAADL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDESE----LNPEELAEAIEELLS- 143 (167)
T ss_dssp HHHSE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECCC-----SCCCHHHHHHCHCC-
T ss_pred HHcCE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCccc----CCHHHHHHHHHHHHc-
Confidence 99998 999999999999999999999999988 9999999999999999999887 789999999999999
Q ss_pred cchHHHHHH
Q 011765 429 EKGQIYRDK 437 (478)
Q Consensus 429 ~~~~~~~~~ 437 (478)
++..+..
T Consensus 144 --~~~~~~~ 150 (167)
T PF04101_consen 144 --DPEKLKE 150 (167)
T ss_dssp --CHH-SHH
T ss_pred --CcHHHHH
Confidence 5554333
No 44
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.53 E-value=1.8e-11 Score=120.13 Aligned_cols=338 Identities=16% Similarity=0.084 Sum_probs=180.2
Q ss_pred ccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChhHHHHHHHHHh
Q 011765 17 FGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYDEVKYLKQSFD 96 (478)
Q Consensus 17 ~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 96 (478)
.|+.+.+..|+++|.++||+|++++........... ....+..++. ... ... ... .
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-----~~~~~~~~~~---~~~-~~~----~~~-----------~ 69 (364)
T cd03814 14 NGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGPA-----RVVPVPSVPL---PGY-PEI----RLA-----------L 69 (364)
T ss_pred cceehHHHHHHHHHHHCCCEEEEEeCCchhhccCCC-----Cceeeccccc---Ccc-cce----Eec-----------c
Confidence 699999999999999999999999987643221110 1111111111 000 000 000 0
Q ss_pred hhhHHHHHHHhhcCCCEEEEcCCcc---cHHHHHHHhCCCeEEEecchHHHHHhhccccccccccCCCCCCCCcccCCCc
Q 011765 97 CLEEPMAKLLQSLAPDWLLFDFAAY---WLPARARELGIPSGFFSIFTAATLGYFGPSSVLINDSGDHLKTPEDYTRVPN 173 (478)
Q Consensus 97 ~~~~~l~~ll~~~~pD~vI~D~~~~---~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (478)
.....+...+++.+||+|++..... .+..+++.+++|++................
T Consensus 70 ~~~~~~~~~~~~~~pdii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---------------------- 127 (364)
T cd03814 70 PPRRRVRRLLDAFAPDVVHIATPGPLGLAALRAARRLGIPVVTSYHTDFPEYLRYYGL---------------------- 127 (364)
T ss_pred cchhhHHHHHHhcCCCEEEEeccchhhHHHHHHHHHcCCCEEEEEecChHHHhhhccc----------------------
Confidence 0122445556788999998764332 345778889999987654322111100000
Q ss_pred ccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHhhcCCCeeeeccCCCCCC
Q 011765 174 WVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQLHRKPVIPVGQLPTTTG 253 (478)
Q Consensus 174 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~~~~~~~vGp~~~~~~ 253 (478)
.. .. .+ . ..........+|.+++.+... .+.......+++..+.+-.....
T Consensus 128 --~~-----~~-----~~----------~--~~~~~~~~~~~d~i~~~s~~~-----~~~~~~~~~~~~~~~~~g~~~~~ 178 (364)
T cd03814 128 --GP-----LS-----WL----------A--WAYLRWFHNRADRVLVPSPSL-----ADELRARGFRRVRLWPRGVDTEL 178 (364)
T ss_pred --ch-----Hh-----Hh----------h--HHHHHHHHHhCCEEEeCCHHH-----HHHHhccCCCceeecCCCccccc
Confidence 00 00 00 0 000111234567777766332 22222222233444432221110
Q ss_pred CCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccC-CCHHHHHHHHHHHHhC-CCCEEEEEecCCCCCCCCCCCCChhh
Q 011765 254 DGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAK-PSQEELTEIALGLELS-KLPFFWVLKKRLGQADTEPIELPDGF 331 (478)
Q Consensus 254 ~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~p~~~ 331 (478)
-. . ..........+ . .+++.+++..|+... ...+.+.+++..+... +..++++-.+. . . +.+
T Consensus 179 ~~-~--~~~~~~~~~~~-~--~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G~~~-~-----~----~~~ 242 (364)
T cd03814 179 FH-P--RRRDEALRARL-G--PPDRPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIVGDGP-A-----R----ARL 242 (364)
T ss_pred cC-c--ccccHHHHHHh-C--CCCCeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEEeCCc-h-----H----HHH
Confidence 00 0 01111111122 1 223466777887653 2334455555554332 33444433221 1 0 111
Q ss_pred hhhcCCCcEEEeccCChhh---hhcCCCceeeeeccC----hhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEe
Q 011765 332 EERTRGRGVVYTSWAPQLA---ILAHDSVGGFLTHAG----WSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELI 404 (478)
Q Consensus 332 ~~~~~~~n~~~~~~vpq~~---vL~~~~~~~~ItHgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l 404 (478)
. ....|+.+..|+++.+ ++..+++ +|+.+. .+++.||+++|+|+|+.+.. .+...+++.+.|...
T Consensus 243 ~--~~~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~~~i~~~~~g~~~ 314 (364)
T cd03814 243 E--ARYPNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAG----GPADIVTDGENGLLV 314 (364)
T ss_pred h--ccCCcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCC----CchhhhcCCcceEEc
Confidence 1 1335888889998755 6777887 776654 37899999999999997654 355666777889888
Q ss_pred eccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHH
Q 011765 405 PRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYL 462 (478)
Q Consensus 405 ~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~ 462 (478)
+.. +.+++.+++.++++ |++.++++.+-+....+.-..+..++.+++.+
T Consensus 315 ~~~------~~~~l~~~i~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (364)
T cd03814 315 EPG------DAEAFAAALAALLA---DPELRRRMAARARAEAERRSWEAFLDNLLEAY 363 (364)
T ss_pred CCC------CHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHhhcCHHHHHHHHHHhh
Confidence 654 67889999999999 77777766666666554454556666666543
No 45
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.53 E-value=6.4e-11 Score=120.57 Aligned_cols=351 Identities=13% Similarity=0.083 Sum_probs=180.5
Q ss_pred CCccEEEEecCCC-----ccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCcc
Q 011765 4 NSKLQIAMFPWLA-----FGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAE 78 (478)
Q Consensus 4 ~~~~~il~~~~~~-----~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~ 78 (478)
..||||+++..+. .|=-+.+..|++.|.++||+|++++....... ...+ +...... .+.....
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~~-~~~g------~~v~~~~-----~~~~~~~ 123 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVPQ-EFHG------AKVIGSW-----SFPCPFY 123 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCCc-cccC------ceeeccC-----CcCCccC
Confidence 4589999885432 24457889999999999999999997653211 1111 3332221 0000000
Q ss_pred ccCCCChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCc---ccHHHHHHHhCCCeEEEecchHHHHHhhccccccc
Q 011765 79 ATIDLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAA---YWLPARARELGIPSGFFSIFTAATLGYFGPSSVLI 155 (478)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~---~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~ 155 (478)
..... . -.....+.+++++.+||+|.+.... +.+..+++.+|+|+|........
T Consensus 124 --~~~~~--------~-~~~~~~l~~~i~~~kpDiIh~~~~~~~~~~~~~~ak~~~ip~V~~~h~~~~------------ 180 (465)
T PLN02871 124 --QKVPL--------S-LALSPRIISEVARFKPDLIHASSPGIMVFGALFYAKLLCVPLVMSYHTHVP------------ 180 (465)
T ss_pred --CCcee--------e-ccCCHHHHHHHHhCCCCEEEECCCchhHHHHHHHHHHhCCCEEEEEecCch------------
Confidence 00000 0 0111246667788899999765422 23445788899999975432110
Q ss_pred cccCCCCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHH
Q 011765 156 NDSGDHLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLE 235 (478)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~ 235 (478)
.+.+.. .+. .+... .+.. .....+.+|.+++.+. ...+.+.
T Consensus 181 -----------------~~~~~~---~~~-----~~~~~------~~~~---~r~~~~~ad~ii~~S~-----~~~~~l~ 221 (465)
T PLN02871 181 -----------------VYIPRY---TFS-----WLVKP------MWDI---IRFLHRAADLTLVTSP-----ALGKELE 221 (465)
T ss_pred -----------------hhhhcc---cch-----hhHHH------HHHH---HHHHHhhCCEEEECCH-----HHHHHHH
Confidence 000000 000 00000 0000 0112345677777662 2233333
Q ss_pred hhc---CCCeeeec-cCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhC-CCCEE
Q 011765 236 QLH---RKPVIPVG-QLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELS-KLPFF 310 (478)
Q Consensus 236 ~~~---~~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~i 310 (478)
... +.++..+. ++....-.. .....+...-+....++..+++..|+.. ....+..+++++++. +.+++
T Consensus 222 ~~~~~~~~kv~vi~nGvd~~~f~p-----~~~~~~~~~~~~~~~~~~~~i~~vGrl~--~~K~~~~li~a~~~~~~~~l~ 294 (465)
T PLN02871 222 AAGVTAANRIRVWNKGVDSESFHP-----RFRSEEMRARLSGGEPEKPLIVYVGRLG--AEKNLDFLKRVMERLPGARLA 294 (465)
T ss_pred HcCCCCcCeEEEeCCccCccccCC-----ccccHHHHHHhcCCCCCCeEEEEeCCCc--hhhhHHHHHHHHHhCCCcEEE
Confidence 322 22333332 111110000 0111122222211112235566778765 334455567777654 44545
Q ss_pred EEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhh---hhcCCCceeeeecc---C-hhhHHHHHHhCCcEeccc
Q 011765 311 WVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLA---ILAHDSVGGFLTHA---G-WSSVVEALQFGMPLIVLT 383 (478)
Q Consensus 311 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~---vL~~~~~~~~ItHg---G-~~s~~eal~~GvP~l~~P 383 (478)
++-.+. .-+.+.+.....++.+..|+++.+ ++..+++ ||.-. | -+++.||+++|+|+|+..
T Consensus 295 ivG~G~----------~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~ 362 (465)
T PLN02871 295 FVGDGP----------YREELEKMFAGTPTVFTGMLQGDELSQAYASGDV--FVMPSESETLGFVVLEAMASGVPVVAAR 362 (465)
T ss_pred EEeCCh----------HHHHHHHHhccCCeEEeccCCHHHHHHHHHHCCE--EEECCcccccCcHHHHHHHcCCCEEEcC
Confidence 443211 112333333445788889998654 6677787 77432 2 357999999999999865
Q ss_pred cccchhhHHHHHhh---cCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHH
Q 011765 384 CYADQGLNAKLLEE---KQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLN 460 (478)
Q Consensus 384 ~~~DQ~~na~~v~~---~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~ 460 (478)
.. .....+.+ .+.|...+.. +.+++.++|.++++ |++.++++.+-+....+.=.-+..++.+++
T Consensus 363 ~g----g~~eiv~~~~~~~~G~lv~~~------d~~~la~~i~~ll~---~~~~~~~~~~~a~~~~~~fsw~~~a~~l~~ 429 (465)
T PLN02871 363 AG----GIPDIIPPDQEGKTGFLYTPG------DVDDCVEKLETLLA---DPELRERMGAAAREEVEKWDWRAATRKLRN 429 (465)
T ss_pred CC----CcHhhhhcCCCCCceEEeCCC------CHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 43 33444555 5778888764 78999999999999 666555555444443332233444455544
No 46
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.45 E-value=3.5e-10 Score=110.55 Aligned_cols=159 Identities=16% Similarity=0.128 Sum_probs=94.5
Q ss_pred CceEEEEeCcccC-CCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhh---hh
Q 011765 277 GSVVYVAFGSEAK-PSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLA---IL 352 (478)
Q Consensus 277 ~~~v~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~---vL 352 (478)
++.+++..|+... ...+.+.+.+..+...+.+++++-.+... . ..........++.+..|+++.+ ++
T Consensus 190 ~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~l~i~G~~~~~------~---~~~~~~~~~~~v~~~g~~~~~~~~~~~ 260 (359)
T cd03823 190 GRLRFGFIGQLTPHKGVDLLLEAFKRLPRGDIELVIVGNGLEL------E---EESYELEGDPRVEFLGAYPQEEIDDFY 260 (359)
T ss_pred CceEEEEEecCccccCHHHHHHHHHHHHhcCcEEEEEcCchhh------h---HHHHhhcCCCeEEEeCCCCHHHHHHHH
Confidence 4467777888664 22344444444333334555444322110 0 0000001235888889997654 57
Q ss_pred cCCCceeeee----ccCh-hhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhc
Q 011765 353 AHDSVGGFLT----HAGW-SSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLV 427 (478)
Q Consensus 353 ~~~~~~~~It----HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~ 427 (478)
..+++ +|+ ..|. .++.||+++|+|+|+.+. ......+.+.+.|...+.. +.+++.+++.++++
T Consensus 261 ~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~~~~g~~~~~~------d~~~l~~~i~~l~~ 328 (359)
T cd03823 261 AEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELVRDGVNGLLFPPG------DAEDLAAALERLID 328 (359)
T ss_pred HhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHhcCCCcEEEECCC------CHHHHHHHHHHHHh
Confidence 77887 663 2344 589999999999998654 4466667666678888764 68999999999999
Q ss_pred ccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHH
Q 011765 428 EEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYL 462 (478)
Q Consensus 428 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~ 462 (478)
+++.++.+.+-....... +..++.+++.+
T Consensus 329 ---~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 357 (359)
T cd03823 329 ---DPDLLERLRAGIEPPRSI---EDQAEEYLKLY 357 (359)
T ss_pred ---ChHHHHHHHHhHHHhhhH---HHHHHHHHHHh
Confidence 666555544433332222 44555555544
No 47
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.43 E-value=4e-10 Score=111.27 Aligned_cols=352 Identities=16% Similarity=0.163 Sum_probs=180.7
Q ss_pred cEEEEecCCCc-cCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCCh
Q 011765 7 LQIAMFPWLAF-GHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPY 85 (478)
Q Consensus 7 ~~il~~~~~~~-gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~ 85 (478)
|||+++++|.. |.-.-...+|+.|.++||+|++++.......... .+.+.+..++.. ..+.. ....
T Consensus 1 mki~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~~~-----~~~~~~~~~~~~---~~~~~-----~~~~ 67 (371)
T cd04962 1 MKIGIVCYPTYGGSGVVATELGKALARRGHEVHFITSSRPFRLDEY-----SPNIFFHEVEVP---QYPLF-----QYPP 67 (371)
T ss_pred CceeEEEEeCCCCccchHHHHHHHHHhcCCceEEEecCCCcchhhh-----ccCeEEEEeccc---ccchh-----hcch
Confidence 78999888755 7778899999999999999999987542211111 122555544311 11000 0000
Q ss_pred hHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcc--cHHHHHHH-h---CCCeEEEecchHHHHHhhccccccccccC
Q 011765 86 DEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAY--WLPARARE-L---GIPSGFFSIFTAATLGYFGPSSVLINDSG 159 (478)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~--~~~~~A~~-l---gIP~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (478)
+ .......+.+++++.+||+|......+ ....++.. . ++|++......... .
T Consensus 68 ----~----~~~~~~~l~~~i~~~~~divh~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~--~------------ 125 (371)
T cd04962 68 ----Y----DLALASKIAEVAKRYKLDLLHVHYAVPHAVAAYLAREILGKKDLPVVTTLHGTDIT--L------------ 125 (371)
T ss_pred ----h----HHHHHHHHHHHHhcCCccEEeecccCCccHHHHHHHHhcCcCCCcEEEEEcCCccc--c------------
Confidence 0 011234666777888999998764332 22233332 2 78988653311000 0
Q ss_pred CCCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHhhc-
Q 011765 160 DHLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQLH- 238 (478)
Q Consensus 160 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~- 238 (478)
....+ .+. . ........+|.+++.+ ....+.....+
T Consensus 126 ------------~~~~~-----~~~------------------~---~~~~~~~~~d~ii~~s-----~~~~~~~~~~~~ 162 (371)
T cd04962 126 ------------VGQDP-----SFQ------------------P---ATRFSIEKSDGVTAVS-----ESLRQETYELFD 162 (371)
T ss_pred ------------ccccc-----cch------------------H---HHHHHHhhCCEEEEcC-----HHHHHHHHHhcC
Confidence 00000 000 0 0011234567777766 22233333332
Q ss_pred -CCCeeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccC-CCHHHHHHHHHHHH-hCCCCEEEEEec
Q 011765 239 -RKPVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAK-PSQEELTEIALGLE-LSKLPFFWVLKK 315 (478)
Q Consensus 239 -~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~al~-~~~~~~i~~~~~ 315 (478)
+.++..+.......... ............... +..+++.+|.... ...+.+.+.+..+. +.+.+++++-.+
T Consensus 163 ~~~~i~vi~n~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~il~~g~l~~~K~~~~li~a~~~l~~~~~~~l~i~G~g 236 (371)
T cd04962 163 ITKEIEVIPNFVDEDRFR-----PKPDEALKRRLGAPE-GEKVLIHISNFRPVKRIDDVIRIFAKVRKEVPARLLLVGDG 236 (371)
T ss_pred CcCCEEEecCCcCHhhcC-----CCchHHHHHhcCCCC-CCeEEEEecccccccCHHHHHHHHHHHHhcCCceEEEEcCC
Confidence 23455554222111100 111122222222222 3366777887664 22233333333332 234555554322
Q ss_pred CCCCCCCCCCCCChhhhhhcC-CCcEEEeccCCh-hhhhcCCCceeeee---c-cChhhHHHHHHhCCcEeccccccchh
Q 011765 316 RLGQADTEPIELPDGFEERTR-GRGVVYTSWAPQ-LAILAHDSVGGFLT---H-AGWSSVVEALQFGMPLIVLTCYADQG 389 (478)
Q Consensus 316 ~~~~~~~~~~~~p~~~~~~~~-~~n~~~~~~vpq-~~vL~~~~~~~~It---H-gG~~s~~eal~~GvP~l~~P~~~DQ~ 389 (478)
. ....+- ....+.. .+++.+..+.++ .+++..+++ +|. . |.-.++.||+++|+|+|+.. ..
T Consensus 237 ~------~~~~~~-~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~----~~ 303 (371)
T cd04962 237 P------ERSPAE-RLARELGLQDDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASN----AG 303 (371)
T ss_pred c------CHHHHH-HHHHHcCCCceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeC----CC
Confidence 1 111110 1111111 346777777765 557777887 652 2 33469999999999999954 44
Q ss_pred hHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHh-cccCChHHHHHHHHHHHHh
Q 011765 390 LNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLF-GDKGRHDRYVDNFLNYLKN 464 (478)
Q Consensus 390 ~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~i~~~~~~ 464 (478)
..+..+++-..|...+.. +.+++.+++.++++ ++..++++.+-+... .+.-+.+..++.+.+.+++
T Consensus 304 ~~~e~i~~~~~G~~~~~~------~~~~l~~~i~~l~~---~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~ 370 (371)
T cd04962 304 GIPEVVKHGETGFLVDVG------DVEAMAEYALSLLE---DDELWQEFSRAARNRAAERFDSERIVPQYEALYRR 370 (371)
T ss_pred CchhhhcCCCceEEcCCC------CHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 556666666678776653 78999999999998 666555544444433 3334445566666666543
No 48
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.43 E-value=2.2e-11 Score=108.55 Aligned_cols=301 Identities=15% Similarity=0.137 Sum_probs=188.4
Q ss_pred cEEEEecCC----CccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCC
Q 011765 7 LQIAMFPWL----AFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATID 82 (478)
Q Consensus 7 ~~il~~~~~----~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~ 82 (478)
|||+|.+=+ +.||+.+++.||++|.++|..++|++.....+.+.+.. ..+.+...
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~~~~~~~----~~f~~~~~----------------- 59 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEAIIHKVY----EGFKVLEG----------------- 59 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhhhhhhhh----hhccceee-----------------
Confidence 789998655 45999999999999999999999999888654332211 00110000
Q ss_pred CChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcccH---HHHHHHhCCCeEEEecchHHHHHhhccccccccccC
Q 011765 83 LPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWL---PARARELGIPSGFFSIFTAATLGYFGPSSVLINDSG 159 (478)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~---~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (478)
...+.+++.++|++|.|.+...+ -.+..+++.+.+.+-......+..
T Consensus 60 ------------------~~~n~ik~~k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~~~~d------------ 109 (318)
T COG3980 60 ------------------RGNNLIKEEKFDLLIFDSYGLNADDFKLIKEEAGSKILIFDDENAKSFKD------------ 109 (318)
T ss_pred ------------------ecccccccccCCEEEEeccCCCHHHHHHHHHHhCCcEEEecCCCccchhh------------
Confidence 00015678899999999988755 357778999999884422211110
Q ss_pred CCCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHhhcC
Q 011765 160 DHLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQLHR 239 (478)
Q Consensus 160 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~~ 239 (478)
... ..+.. ....+ +. ...|
T Consensus 110 ---------------~d~-----------------------ivN~~------~~a~~------~y-----------~~v~ 128 (318)
T COG3980 110 ---------------NDL-----------------------IVNAI------LNAND------YY-----------GLVP 128 (318)
T ss_pred ---------------hHh-----------------------hhhhh------hcchh------hc-----------cccC
Confidence 000 00000 00000 00 0011
Q ss_pred CC-eeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCC
Q 011765 240 KP-VIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLG 318 (478)
Q Consensus 240 ~~-~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~ 318 (478)
.+ -++.||-....++. .-.++.-.-++ ++.-|+|++|..- ......+++..|.+..+.+.++++..
T Consensus 129 ~k~~~~lGp~y~~lr~e--------F~~~r~~~~~r-~~r~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~-- 195 (318)
T COG3980 129 NKTRYYLGPGYAPLRPE--------FYALREENTER-PKRDILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSS-- 195 (318)
T ss_pred cceEEEecCCceeccHH--------HHHhHHHHhhc-chheEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCC--
Confidence 11 24445443222110 00011111111 2346999998643 34567778888888887777777632
Q ss_pred CCCCCCCCCChhhhhhc-CCCcEEEeccCC-hhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhhHHHHHh
Q 011765 319 QADTEPIELPDGFEERT-RGRGVVYTSWAP-QLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLE 396 (478)
Q Consensus 319 ~~~~~~~~~p~~~~~~~-~~~n~~~~~~vp-q~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~ 396 (478)
...+.++.++. ..+|+....... ...++..+++ .|+.||. |+.|++..|+|.+++|+...|--.|+..+
T Consensus 196 ------~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~ 266 (318)
T COG3980 196 ------NPTLKNLRKRAEKYPNINLYIDTNDMAELMKEADL--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFE 266 (318)
T ss_pred ------CcchhHHHHHHhhCCCeeeEecchhHHHHHHhcch--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHH
Confidence 22223333333 245665544444 3457877888 9999875 79999999999999999999999999999
Q ss_pred hcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccC
Q 011765 397 EKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKG 449 (478)
Q Consensus 397 ~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~ 449 (478)
.+|+-..+... +++..+...+.++.. |...|++.-.-++.+-+.-
T Consensus 267 ~lg~~~~l~~~-----l~~~~~~~~~~~i~~---d~~~rk~l~~~~~~i~dg~ 311 (318)
T COG3980 267 ALGIIKQLGYH-----LKDLAKDYEILQIQK---DYARRKNLSFGSKLIGDGR 311 (318)
T ss_pred hcCchhhccCC-----CchHHHHHHHHHhhh---CHHHhhhhhhccceeeccc
Confidence 99998888765 578888888888988 7888887776666655443
No 49
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.40 E-value=7.9e-14 Score=117.40 Aligned_cols=126 Identities=22% Similarity=0.286 Sum_probs=81.3
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChhHH
Q 011765 9 IAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYDEV 88 (478)
Q Consensus 9 il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~~~ 88 (478)
|+|++.++.||++|+++||++|++|||+|++++++.+.+.+++.| ++|+.++.. ..++.... .........
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~G------l~~~~~~~~--~~~~~~~~-~~~~~~~~~ 71 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAAG------LEFVPIPGD--SRLPRSLE-PLANLRRLA 71 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHTT-------EEEESSSC--GGGGHHHH-HHHHHHCHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccccC------ceEEEecCC--cCcCcccc-hhhhhhhHH
Confidence 789999999999999999999999999999999999999999888 999999731 00100000 000000001
Q ss_pred H---HHHHHHhhhhHHHHHHH----hhcCCCEEEEcCCcccHHHHHHHhCCCeEEEecchHH
Q 011765 89 K---YLKQSFDCLEEPMAKLL----QSLAPDWLLFDFAAYWLPARARELGIPSGFFSIFTAA 143 (478)
Q Consensus 89 ~---~~~~~~~~~~~~l~~ll----~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~ 143 (478)
. .+......+.+...+.+ ....+|+++.+.....+..+|+++|||++.....+.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 72 RLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWF 133 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGG
T ss_pred HHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcC
Confidence 1 11111111111111111 1125788888888888899999999999998776654
No 50
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.36 E-value=7e-10 Score=109.49 Aligned_cols=144 Identities=18% Similarity=0.163 Sum_probs=88.5
Q ss_pred CceEEEEeCcccC-CCHHHHHHHHHHHHhC-CCCEEEEEecCCCCCCCCCCCCChhhh---hhcCCCcEEEeccCChhh-
Q 011765 277 GSVVYVAFGSEAK-PSQEELTEIALGLELS-KLPFFWVLKKRLGQADTEPIELPDGFE---ERTRGRGVVYTSWAPQLA- 350 (478)
Q Consensus 277 ~~~v~vs~Gs~~~-~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~p~~~~---~~~~~~n~~~~~~vpq~~- 350 (478)
++.+++..|+... .+.+.+...++.+.+. +.+++++ +.+. ..+.+. .....+|+.+..++++.+
T Consensus 219 ~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i~-G~~~---------~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 288 (394)
T cd03794 219 DKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLIV-GDGP---------EKEELKELAKALGLDNVTFLGRVPKEEL 288 (394)
T ss_pred CcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEEe-CCcc---------cHHHHHHHHHHcCCCcEEEeCCCChHHH
Confidence 4577778888764 2334455544544433 4444433 2211 111122 123446888888998754
Q ss_pred --hhcCCCceeeeeccC---------hhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHH
Q 011765 351 --ILAHDSVGGFLTHAG---------WSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVA 419 (478)
Q Consensus 351 --vL~~~~~~~~ItHgG---------~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~ 419 (478)
++..+++ +|.... -+++.||+++|+|+|+.+..+.+. .+.+.+.|...+.. +.++++
T Consensus 289 ~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~----~~~~~~~g~~~~~~------~~~~l~ 356 (394)
T cd03794 289 PELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE----LVEEAGAGLVVPPG------DPEALA 356 (394)
T ss_pred HHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh----hhccCCcceEeCCC------CHHHHH
Confidence 5677777 663222 245799999999999987665433 33344677777654 789999
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHHh
Q 011765 420 ESLRLVLVEEKGQIYRDKAKEMKGLF 445 (478)
Q Consensus 420 ~~i~~ll~~~~~~~~~~~a~~~~~~~ 445 (478)
++|.++++ |++.++++.+-+...
T Consensus 357 ~~i~~~~~---~~~~~~~~~~~~~~~ 379 (394)
T cd03794 357 AAILELLD---DPEERAEMGENGRRY 379 (394)
T ss_pred HHHHHHHh---ChHHHHHHHHHHHHH
Confidence 99999998 666666555544443
No 51
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.36 E-value=2.7e-09 Score=103.93 Aligned_cols=327 Identities=16% Similarity=0.109 Sum_probs=171.0
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCcccc-CCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChh
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDR-LPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYD 86 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~-~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~ 86 (478)
||++++....|+...+..++++|.++||+|++++....... ....+ +.+..++.... . ....
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-----~-----~~~~- 63 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEALG------VKVIPIPLDRR-----G-----INPF- 63 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCcccccccCC------ceEEecccccc-----c-----cChH-
Confidence 58888877789999999999999999999999998766542 23333 66666652110 0 0010
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCccc--HHHHHHHhCCCeEEEecchHHHHHhhccccccccccCCCCCC
Q 011765 87 EVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYW--LPARARELGIPSGFFSIFTAATLGYFGPSSVLINDSGDHLKT 164 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~--~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (478)
..+. ....+.+++++.+||+|++....+. +..++...+.|.+...........
T Consensus 64 --~~~~-----~~~~~~~~~~~~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------------ 118 (359)
T cd03808 64 --KDLK-----ALLRLYRLLRKERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVF------------------ 118 (359)
T ss_pred --hHHH-----HHHHHHHHHHhcCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhh------------------
Confidence 0111 1124566777889999998854432 334455466665554321110000
Q ss_pred CCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHhhcC---CC
Q 011765 165 PEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQLHR---KP 241 (478)
Q Consensus 165 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~~---~~ 241 (478)
.... . ...+. .... ......+|.+++.+ ....+....... ..
T Consensus 119 ---------~~~~-----~----~~~~~----------~~~~--~~~~~~~d~ii~~s-----~~~~~~~~~~~~~~~~~ 163 (359)
T cd03808 119 ---------TSGG-----L----KRRLY----------LLLE--RLALRFTDKVIFQN-----EDDRDLALKLGIIKKKK 163 (359)
T ss_pred ---------ccch-----h----HHHHH----------HHHH--HHHHhhccEEEEcC-----HHHHHHHHHhcCCCcCc
Confidence 0000 0 00000 0000 01123457777766 222333333221 12
Q ss_pred eeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccC-CCHHHHHHHHHHHHhCC--CCEEEEEecCCC
Q 011765 242 VIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAK-PSQEELTEIALGLELSK--LPFFWVLKKRLG 318 (478)
Q Consensus 242 ~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~al~~~~--~~~i~~~~~~~~ 318 (478)
...+.|........ ...... ..+++.+++..|+... ...+.+.+.++.+.+.+ .+++++-.+...
T Consensus 164 ~~~~~~~~~~~~~~-----~~~~~~-------~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~ 231 (359)
T cd03808 164 TVLIPGSGVDLDRF-----SPSPEP-------IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEE 231 (359)
T ss_pred eEEecCCCCChhhc-----Cccccc-------cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcc
Confidence 33333222211100 000000 1234578888888764 23344555555554323 343433222111
Q ss_pred CCCCCCCCCChh-hhhhcCCCcEEEeccCCh-hhhhcCCCceeeeecc----ChhhHHHHHHhCCcEeccccccchhhHH
Q 011765 319 QADTEPIELPDG-FEERTRGRGVVYTSWAPQ-LAILAHDSVGGFLTHA----GWSSVVEALQFGMPLIVLTCYADQGLNA 392 (478)
Q Consensus 319 ~~~~~~~~~p~~-~~~~~~~~n~~~~~~vpq-~~vL~~~~~~~~ItHg----G~~s~~eal~~GvP~l~~P~~~DQ~~na 392 (478)
...-.. ........++.+..+..+ ..++..+++ +|.-. -.+++.||+++|+|+|+.+.. ...
T Consensus 232 ------~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~ 299 (359)
T cd03808 232 ------NPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCR 299 (359)
T ss_pred ------hhhHHHHHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----Cch
Confidence 000000 111112346777776544 557888888 66433 247899999999999996543 345
Q ss_pred HHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Q 011765 393 KLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGL 444 (478)
Q Consensus 393 ~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~ 444 (478)
..+.+.+.|...+.. +.+++.+++.+++. +++.++++.+-+..
T Consensus 300 ~~i~~~~~g~~~~~~------~~~~~~~~i~~l~~---~~~~~~~~~~~~~~ 342 (359)
T cd03808 300 EAVIDGVNGFLVPPG------DAEALADAIERLIE---DPELRARMGQAARK 342 (359)
T ss_pred hhhhcCcceEEECCC------CHHHHHHHHHHHHh---CHHHHHHHHHHHHH
Confidence 556666778777653 78999999999998 66655554444333
No 52
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.36 E-value=4.1e-09 Score=105.15 Aligned_cols=93 Identities=15% Similarity=0.100 Sum_probs=67.0
Q ss_pred CCcEEEeccCChhh---hhcCCCceeee--e-ccCh-hhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCC
Q 011765 337 GRGVVYTSWAPQLA---ILAHDSVGGFL--T-HAGW-SSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEG 409 (478)
Q Consensus 337 ~~n~~~~~~vpq~~---vL~~~~~~~~I--t-HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~ 409 (478)
.+++.+..++|+.+ ++..+++ +| + +.|. +++.||+++|+|+|+. |.......+.+-..|..++..
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas----~~~g~~e~i~~~~~G~lv~~~-- 351 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGS----DTAPVREVITDGENGLLVDFF-- 351 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEc----CCCCchhhcccCCceEEcCCC--
Confidence 46788999999855 5667787 55 3 2333 4899999999999985 444566666665678877654
Q ss_pred CCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Q 011765 410 DGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGL 444 (478)
Q Consensus 410 ~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~ 444 (478)
++++++++|.++++ +++.++++.+-+..
T Consensus 352 ----d~~~la~~i~~ll~---~~~~~~~l~~~ar~ 379 (396)
T cd03818 352 ----DPDALAAAVIELLD---DPARRARLRRAARR 379 (396)
T ss_pred ----CHHHHHHHHHHHHh---CHHHHHHHHHHHHH
Confidence 78999999999999 66655554444333
No 53
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.34 E-value=1.4e-09 Score=106.81 Aligned_cols=325 Identities=16% Similarity=0.110 Sum_probs=165.7
Q ss_pred EEEEec----CCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCC
Q 011765 8 QIAMFP----WLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDL 83 (478)
Q Consensus 8 ~il~~~----~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~ 83 (478)
||++++ ....|+-.....++++|.++||+|+++++........... ..+...+ .. ...
T Consensus 1 kil~~~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~------~~~~~~~--------~~----~~~ 62 (374)
T cd03817 1 KIGIFTDTYLPQVNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEEEV------VVVRPFR--------VP----TFK 62 (374)
T ss_pred CeeEeehhccCCCCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCccccc------ccccccc--------cc----cch
Confidence 455553 2355899999999999999999999998766543222111 1111110 00 000
Q ss_pred ChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcc---cHHHHHHHhCCCeEEEecchHHHHHhhccccccccccCC
Q 011765 84 PYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAY---WLPARARELGIPSGFFSIFTAATLGYFGPSSVLINDSGD 160 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~---~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (478)
. .. ..........+...++..+||+|++..... .+..+++..++|++.................
T Consensus 63 ~----~~-~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-------- 129 (374)
T cd03817 63 Y----PD-FRLPLPIPRALIIILKELGPDIVHTHTPFSLGLLGLRVARKLGIPVVATYHTMYEDYTHYVPLG-------- 129 (374)
T ss_pred h----hh-hhccccHHHHHHHHHhhcCCCEEEECCchhhhhHHHHHHHHcCCCEEEEecCCHHHHHHHHhcc--------
Confidence 0 00 000011223444567788999998875332 2446778899999876553332111100000
Q ss_pred CCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHhhc-C
Q 011765 161 HLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQLH-R 239 (478)
Q Consensus 161 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~-~ 239 (478)
.. .... .+ . ..........+|.+++.+.. ..+...... +
T Consensus 130 ------------~~--------~~~~---~~-----------~-~~~~~~~~~~~d~i~~~s~~-----~~~~~~~~~~~ 169 (374)
T cd03817 130 ------------RL--------LARA---VV-----------R-RKLSRRFYNRCDAVIAPSEK-----IADLLREYGVK 169 (374)
T ss_pred ------------cc--------hhHH---HH-----------H-HHHHHHHhhhCCEEEeccHH-----HHHHHHhcCCC
Confidence 00 0000 00 0 01112234567777776632 222222221 2
Q ss_pred CCeeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccC-CCHHHHHHHHHHHHh--CCCCEEEEEecC
Q 011765 240 KPVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAK-PSQEELTEIALGLEL--SKLPFFWVLKKR 316 (478)
Q Consensus 240 ~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~al~~--~~~~~i~~~~~~ 316 (478)
.++..+.+-....... .........-+.. .+++.+++..|+... .+.+.+..++..+.. .+.+++++-++.
T Consensus 170 ~~~~vi~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~ 243 (374)
T cd03817 170 RPIEVIPTGIDLDRFE-----PVDGDDERRKLGI-PEDEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGP 243 (374)
T ss_pred CceEEcCCccchhccC-----ccchhHHHHhcCC-CCCCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCc
Confidence 2233333211111000 0001100001111 223466677787664 234555555555544 234444432211
Q ss_pred CCCCCCCCCCCChhhhhh---c-CCCcEEEeccCChhh---hhcCCCceeeeec----cChhhHHHHHHhCCcEeccccc
Q 011765 317 LGQADTEPIELPDGFEER---T-RGRGVVYTSWAPQLA---ILAHDSVGGFLTH----AGWSSVVEALQFGMPLIVLTCY 385 (478)
Q Consensus 317 ~~~~~~~~~~~p~~~~~~---~-~~~n~~~~~~vpq~~---vL~~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~ 385 (478)
.-+.+.+. . ..+++.+..++|+.+ ++..+++ +|.- ++.+++.||+++|+|+|+..
T Consensus 244 ----------~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~-- 309 (374)
T cd03817 244 ----------EREELEELARELGLADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVD-- 309 (374)
T ss_pred ----------hHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeC--
Confidence 01112211 1 245888889998754 5777888 6633 33478999999999999854
Q ss_pred cchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHH
Q 011765 386 ADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYR 435 (478)
Q Consensus 386 ~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~ 435 (478)
....+..+.+.+.|..++..+ . ++.+++.++++ +++.+
T Consensus 310 --~~~~~~~i~~~~~g~~~~~~~------~-~~~~~i~~l~~---~~~~~ 347 (374)
T cd03817 310 --APGLPDLVADGENGFLFPPGD------E-ALAEALLRLLQ---DPELR 347 (374)
T ss_pred --CCChhhheecCceeEEeCCCC------H-HHHHHHHHHHh---ChHHH
Confidence 445566677778888887653 3 89999999999 55533
No 54
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.33 E-value=1.8e-09 Score=105.36 Aligned_cols=342 Identities=17% Similarity=0.068 Sum_probs=179.0
Q ss_pred ccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChhHHHHHHHHHh
Q 011765 17 FGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYDEVKYLKQSFD 96 (478)
Q Consensus 17 ~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 96 (478)
.|+...+..+++.|.+.||+|++++............ ..... ... ..... ........
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~-------~~~~~-----~~~-----~~~~~-----~~~~~~~~ 71 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEV-------GGIVV-----VRP-----PPLLR-----VRRLLLLL 71 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeee-------cCcce-----ecC-----Ccccc-----cchhHHHH
Confidence 6889999999999999999999999876654322111 00000 000 00000 00111111
Q ss_pred hhhHHHHHHHhhcCCCEEEEcCCcccHH--HHHHHhCCCeEEEecchHHHHHhhccccccccccCCCCCCCCcccCCCcc
Q 011765 97 CLEEPMAKLLQSLAPDWLLFDFAAYWLP--ARARELGIPSGFFSIFTAATLGYFGPSSVLINDSGDHLKTPEDYTRVPNW 174 (478)
Q Consensus 97 ~~~~~l~~ll~~~~pD~vI~D~~~~~~~--~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (478)
.....+...++..+||+|+......... ..+...++|++............ .
T Consensus 72 ~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~--------------------------~ 125 (374)
T cd03801 72 LLALRLRRLLRRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRPG--------------------------N 125 (374)
T ss_pred HHHHHHHHHhhhcCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhccc--------------------------c
Confidence 2233556667778999999886555433 47888899999765422211000 0
Q ss_pred cccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHhhcCC---CeeeeccCCCC
Q 011765 175 VSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQLHRK---PVIPVGQLPTT 251 (478)
Q Consensus 175 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~~~---~~~~vGp~~~~ 251 (478)
. . ..... ............++.+++.+ ....+.+...++. ++..+..-...
T Consensus 126 ----~----~-~~~~~------------~~~~~~~~~~~~~d~~i~~s-----~~~~~~~~~~~~~~~~~~~~i~~~~~~ 179 (374)
T cd03801 126 ----E----L-GLLLK------------LARALERRALRRADRIIAVS-----EATREELRELGGVPPEKITVIPNGVDT 179 (374)
T ss_pred ----c----h-hHHHH------------HHHHHHHHHHHhCCEEEEec-----HHHHHHHHhcCCCCCCcEEEecCcccc
Confidence 0 0 00000 00001122244667777766 3333444444432 45555432211
Q ss_pred CCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccC-CCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChh
Q 011765 252 TGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAK-PSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDG 330 (478)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~ 330 (478)
.... ... .+..... ...+++.+++.+|+... .+.+.+...+..+......+-+.+-+.. .....
T Consensus 180 ~~~~-----~~~-~~~~~~~-~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~--------~~~~~ 244 (374)
T cd03801 180 ERFR-----PAP-RAARRRL-GIPEDEPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVRLVIVGDG--------PLREE 244 (374)
T ss_pred cccC-----ccc-hHHHhhc-CCcCCCeEEEEecchhhhcCHHHHHHHHHHHhhhcCCeEEEEEeCc--------HHHHH
Confidence 1100 000 1111111 11223467777887663 2223333333333332222322222211 11111
Q ss_pred hhh----hcCCCcEEEeccCChh---hhhcCCCceeeee----ccChhhHHHHHHhCCcEeccccccchhhHHHHHhhcC
Q 011765 331 FEE----RTRGRGVVYTSWAPQL---AILAHDSVGGFLT----HAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQ 399 (478)
Q Consensus 331 ~~~----~~~~~n~~~~~~vpq~---~vL~~~~~~~~It----HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g 399 (478)
+.+ .....++.+..++++. .++..+++ +|. -|..+++.||+++|+|+|+.+. ...+..+.+.+
T Consensus 245 ~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~~ 318 (374)
T cd03801 245 LEALAAELGLGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDGE 318 (374)
T ss_pred HHHHHHHhCCCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCCc
Confidence 111 1134588888999754 46777777 663 2456799999999999998655 45666676677
Q ss_pred eEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHH-HhcccCChHHHHHHHHHHH
Q 011765 400 IVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKG-LFGDKGRHDRYVDNFLNYL 462 (478)
Q Consensus 400 ~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~i~~~~ 462 (478)
.|...+.. +.+++.++|.++++ +++.++++.+-+. .+.+.-..+..++.+.+.+
T Consensus 319 ~g~~~~~~------~~~~l~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (374)
T cd03801 319 TGLLVPPG------DPEALAEAILRLLD---DPELRRRLGEAARERVAERFSWDRVAARTEEVY 373 (374)
T ss_pred ceEEeCCC------CHHHHHHHHHHHHc---ChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Confidence 88877653 68999999999999 6665555444433 4444444455556555543
No 55
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.32 E-value=2e-08 Score=100.86 Aligned_cols=117 Identities=12% Similarity=0.150 Sum_probs=78.2
Q ss_pred CcEEEeccCChhh---hhcCCCceeeeeccCh------hhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccC
Q 011765 338 RGVVYTSWAPQLA---ILAHDSVGGFLTHAGW------SSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDE 408 (478)
Q Consensus 338 ~n~~~~~~vpq~~---vL~~~~~~~~ItHgG~------~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~ 408 (478)
+|+.+..|+|+.+ +++.+++.++.+..+. +.+.|++++|+|+|+....+.. ....+. +.|...+..
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~--~~G~~~~~~- 358 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE--GIGVCVEPE- 358 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh--CCcEEeCCC-
Confidence 4788889998754 6778888544444332 3478999999999997654321 122333 678888754
Q ss_pred CCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhc-ccCChHHHHHHHHHHHHhccc
Q 011765 409 GDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFG-DKGRHDRYVDNFLNYLKNHRC 467 (478)
Q Consensus 409 ~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~ 467 (478)
+.++++++|.++++ |++.++++.+-+.... +.=..+..++.+++.+++...
T Consensus 359 -----d~~~la~~i~~l~~---~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~ 410 (412)
T PRK10307 359 -----SVEALVAAIAALAR---QALLRPKLGTVAREYAERTLDKENVLRQFIADIRGLVA 410 (412)
T ss_pred -----CHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhc
Confidence 78999999999998 6666555555444432 333445677777777766543
No 56
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.29 E-value=2.8e-09 Score=101.51 Aligned_cols=301 Identities=18% Similarity=0.154 Sum_probs=160.4
Q ss_pred cEEEE-ecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc--cccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCC
Q 011765 7 LQIAM-FPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRN--IDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDL 83 (478)
Q Consensus 7 ~~il~-~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~--~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~ 83 (478)
|||.+ +..|. |+.-+..++++|.++||+|.+.+-+.. .+.+...| +++..+. .. .
T Consensus 1 MkIwiDi~~p~--hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~yg------~~y~~iG----~~-g--------- 58 (335)
T PF04007_consen 1 MKIWIDITHPA--HVHFFKNIIRELEKRGHEVLITARDKDETEELLDLYG------IDYIVIG----KH-G--------- 58 (335)
T ss_pred CeEEEECCCch--HHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHcC------CCeEEEc----CC-C---------
Confidence 67776 45555 899999999999999999999886543 23444555 7777775 11 0
Q ss_pred ChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHhhccccccccccCCCCC
Q 011765 84 PYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFGPSSVLINDSGDHLK 163 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (478)
.+....+...... .-.+.+++++.+||++|+- ..+.+..+|.-+|+|+|.+.-+.......
T Consensus 59 -~~~~~Kl~~~~~R-~~~l~~~~~~~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~~---------------- 119 (335)
T PF04007_consen 59 -DSLYGKLLESIER-QYKLLKLIKKFKPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQN---------------- 119 (335)
T ss_pred -CCHHHHHHHHHHH-HHHHHHHHHhhCCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhccc----------------
Confidence 1111122222222 2356677788899999975 45667889999999999996643322110
Q ss_pred CCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHhhcCCCee
Q 011765 164 TPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQLHRKPVI 243 (478)
Q Consensus 164 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~~~~~~ 243 (478)
-..+|+...+.... ..+. ....++. .+....-++.+.| ..
T Consensus 120 --------~Lt~Pla~~i~~P~-~~~~------------~~~~~~G---~~~~i~~y~G~~E----------------~a 159 (335)
T PF04007_consen 120 --------RLTLPLADVIITPE-AIPK------------EFLKRFG---AKNQIRTYNGYKE----------------LA 159 (335)
T ss_pred --------eeehhcCCeeECCc-ccCH------------HHHHhcC---CcCCEEEECCeee----------------EE
Confidence 00111111000000 0000 0000000 0001111333222 11
Q ss_pred eeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccC----CCHHHHHHHHHHHHhCCCCEEEEEecCCCC
Q 011765 244 PVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAK----PSQEELTEIALGLELSKLPFFWVLKKRLGQ 319 (478)
Q Consensus 244 ~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~----~~~~~~~~~~~al~~~~~~~i~~~~~~~~~ 319 (478)
++-| ..+++++.+-+.. ++++.|++=+-+... .....+.++++.|++.+..++..-+..
T Consensus 160 yl~~-------------F~Pd~~vl~~lg~-~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~--- 222 (335)
T PF04007_consen 160 YLHP-------------FKPDPEVLKELGL-DDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYE--- 222 (335)
T ss_pred eecC-------------CCCChhHHHHcCC-CCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCc---
Confidence 1111 1123334444442 244577766655322 223556778888888877644333221
Q ss_pred CCCCCCCCChhhhhhcCCCcEEE-eccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhhHHHHHhhc
Q 011765 320 ADTEPIELPDGFEERTRGRGVVY-TSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEK 398 (478)
Q Consensus 320 ~~~~~~~~p~~~~~~~~~~n~~~-~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~ 398 (478)
..++ ..++. ++.+ ..-++..++|.++++ +|+-|| ....||...|+|.|.+ +-++-...-+.+.+.
T Consensus 223 ------~~~~-~~~~~---~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~ 288 (335)
T PF04007_consen 223 ------DQRE-LFEKY---GVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEK 288 (335)
T ss_pred ------chhh-HHhcc---CccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHC
Confidence 1111 11111 2222 234455689999999 999887 7789999999999974 222333344556777
Q ss_pred CeEEEeeccCCCCcccHHHHHHHHHHHhc
Q 011765 399 QIVELIPRDEGDGFFTRNSVAESLRLVLV 427 (478)
Q Consensus 399 g~G~~l~~~~~~~~~~~~~l~~~i~~ll~ 427 (478)
|+ .... -+.+++.+.|.+.+.
T Consensus 289 Gl--l~~~------~~~~ei~~~v~~~~~ 309 (335)
T PF04007_consen 289 GL--LYHS------TDPDEIVEYVRKNLG 309 (335)
T ss_pred CC--eEec------CCHHHHHHHHHHhhh
Confidence 75 2222 267777776655554
No 57
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.28 E-value=8.8e-09 Score=102.66 Aligned_cols=89 Identities=15% Similarity=0.196 Sum_probs=66.0
Q ss_pred CCcEEEeccCChhh---hhcCCCceeeeec---cC-hhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCC
Q 011765 337 GRGVVYTSWAPQLA---ILAHDSVGGFLTH---AG-WSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEG 409 (478)
Q Consensus 337 ~~n~~~~~~vpq~~---vL~~~~~~~~ItH---gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~ 409 (478)
.+++.+..|+|+.+ ++..+++ +|+. -| -.++.||+++|+|+|+.... .....+++.+.|...+..
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i~~~~~g~~~~~~-- 353 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIVVDGVTGLLVDPR-- 353 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHccCCCCeEEeCCC--
Confidence 35788999999865 4777887 7643 22 36899999999999986543 455567666789887653
Q ss_pred CCcccHHHHHHHHHHHhcccchHHHHHHHHH
Q 011765 410 DGFFTRNSVAESLRLVLVEEKGQIYRDKAKE 440 (478)
Q Consensus 410 ~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~ 440 (478)
+.++++++|.++++ +++.++++.+
T Consensus 354 ----~~~~l~~~i~~l~~---~~~~~~~~~~ 377 (398)
T cd03800 354 ----DPEALAAALRRLLT---DPALRRRLSR 377 (398)
T ss_pred ----CHHHHHHHHHHHHh---CHHHHHHHHH
Confidence 78999999999999 6655544443
No 58
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.27 E-value=2.3e-08 Score=100.17 Aligned_cols=91 Identities=18% Similarity=0.175 Sum_probs=63.0
Q ss_pred CcEEEe-ccCChhh---hhcCCCceeeee-c-----cC-hhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeec
Q 011765 338 RGVVYT-SWAPQLA---ILAHDSVGGFLT-H-----AG-WSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPR 406 (478)
Q Consensus 338 ~n~~~~-~~vpq~~---vL~~~~~~~~It-H-----gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~ 406 (478)
+++.+. .|+|..+ +|+.+++ +|. + -| -+++.||+++|+|+|+... ......+++.+.|...
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv~~~~~G~lv-- 365 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELVKHGENGLVF-- 365 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHhcCCCCEEEE--
Confidence 455544 5887644 5777888 663 1 12 3579999999999999543 3566677777788876
Q ss_pred cCCCCcccHHHHHHHHHHHhcccch---HHHHHHHHHHHHHh
Q 011765 407 DEGDGFFTRNSVAESLRLVLVEEKG---QIYRDKAKEMKGLF 445 (478)
Q Consensus 407 ~~~~~~~~~~~l~~~i~~ll~~~~~---~~~~~~a~~~~~~~ 445 (478)
. +.++|+++|.++++ | ++.++++.+-++..
T Consensus 366 -~-----d~~~la~~i~~ll~---~~~~~~~~~~m~~~~~~~ 398 (415)
T cd03816 366 -G-----DSEELAEQLIDLLS---NFPNRGKLNSLKKGAQEE 398 (415)
T ss_pred -C-----CHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHh
Confidence 2 67999999999999 6 55555554444443
No 59
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.26 E-value=8.8e-09 Score=99.83 Aligned_cols=320 Identities=17% Similarity=0.120 Sum_probs=163.7
Q ss_pred EEEEecCC-C--ccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCC
Q 011765 8 QIAMFPWL-A--FGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLP 84 (478)
Q Consensus 8 ~il~~~~~-~--~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~ 84 (478)
||++++.. . .|...-+..++++|.++||+|++++.......... ...++.+..++. . ...
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~----~~~~~~~~~~~~----~-~~~-------- 63 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGEPPFYE----LDPKIKVIDLGD----K-RDS-------- 63 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCCCCccc----cCCccceeeccc----c-ccc--------
Confidence 35554333 3 35556678899999999999999998765411111 112344444431 0 000
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCC-CeEEEecchHHHHHhhccccccccccCCCCC
Q 011765 85 YDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWLPARARELGI-PSGFFSIFTAATLGYFGPSSVLINDSGDHLK 163 (478)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgI-P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (478)
. ..........+..+++..+||+|+...........+...+. |++.........
T Consensus 64 -----~-~~~~~~~~~~~~~~l~~~~~d~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------------- 118 (348)
T cd03820 64 -----K-LLARFKKLRRLRKLLKNNKPDVVISFLTSLLTFLASLGLKIVKLIVSEHNSPDA------------------- 118 (348)
T ss_pred -----c-hhccccchHHHHHhhcccCCCEEEEcCchHHHHHHHHhhccccEEEecCCCccc-------------------
Confidence 0 00001122356667777899999998655334444555555 666542211000
Q ss_pred CCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHhhcCCCee
Q 011765 164 TPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQLHRKPVI 243 (478)
Q Consensus 164 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~~~~~~ 243 (478)
. .. ... . ........+.+|.++..+.... .......+.++.
T Consensus 119 ----------~-~~----~~~------~-------------~~~~~~~~~~~d~ii~~s~~~~-----~~~~~~~~~~~~ 159 (348)
T cd03820 119 ----------Y-KK----RLR------R-------------LLLRRLLYRRADAVVVLTEEDR-----ALYYKKFNKNVV 159 (348)
T ss_pred ----------h-hh----hhH------H-------------HHHHHHHHhcCCEEEEeCHHHH-----HHhhccCCCCeE
Confidence 0 00 000 0 0011223456677777663321 111222234555
Q ss_pred eeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccC-CCHHHHHHHHHHHHhCC--CCEEEEEecCCCCC
Q 011765 244 PVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAK-PSQEELTEIALGLELSK--LPFFWVLKKRLGQA 320 (478)
Q Consensus 244 ~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~ 320 (478)
.+++....... . ....+++.+++..|+... ...+.+.+.++.+.+.. .+++++-.+.
T Consensus 160 vi~~~~~~~~~------~----------~~~~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~---- 219 (348)
T cd03820 160 VIPNPLPFPPE------E----------PSSDLKSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDGP---- 219 (348)
T ss_pred EecCCcChhhc------c----------ccCCCCCcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCCC----
Confidence 56533321110 0 001223356667777654 23344555555554323 3333332211
Q ss_pred CCCCCCCChhhhhhc-CCCcEEEeccCCh-hhhhcCCCceeeeecc---C-hhhHHHHHHhCCcEeccccccchhhHHHH
Q 011765 321 DTEPIELPDGFEERT-RGRGVVYTSWAPQ-LAILAHDSVGGFLTHA---G-WSSVVEALQFGMPLIVLTCYADQGLNAKL 394 (478)
Q Consensus 321 ~~~~~~~p~~~~~~~-~~~n~~~~~~vpq-~~vL~~~~~~~~ItHg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~ 394 (478)
....+.. ...+. ...++.+..+... ..++..+++ +|.-. | -+++.||+++|+|+|+.+....+ ..
T Consensus 220 --~~~~~~~-~~~~~~~~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~ 290 (348)
T cd03820 220 --EREALEA-LIKELGLEDRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SE 290 (348)
T ss_pred --CHHHHHH-HHHHcCCCCeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCch----Hh
Confidence 1111111 11111 1346666666333 557777887 66443 2 47899999999999986544332 33
Q ss_pred HhhcC-eEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhc
Q 011765 395 LEEKQ-IVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFG 446 (478)
Q Consensus 395 v~~~g-~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~ 446 (478)
+.+.+ .|...+.. +.+++.++|.++++ |++.++++.+-+....
T Consensus 291 ~~~~~~~g~~~~~~------~~~~~~~~i~~ll~---~~~~~~~~~~~~~~~~ 334 (348)
T cd03820 291 IIEDGVNGLLVPNG------DVEALAEALLRLME---DEELRKRMGANARESA 334 (348)
T ss_pred hhccCcceEEeCCC------CHHHHHHHHHHHHc---CHHHHHHHHHHHHHHH
Confidence 44454 78877653 78999999999999 7777766665554433
No 60
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.25 E-value=1.9e-08 Score=98.49 Aligned_cols=347 Identities=16% Similarity=0.095 Sum_probs=176.9
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChhHHHHHHHHH
Q 011765 16 AFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYDEVKYLKQSF 95 (478)
Q Consensus 16 ~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 95 (478)
..|+-..+..+++.|.+.||+|++++............ ........ ........... .......
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~----~~~~~~~~------~~~~~~~~~~~------~~~~~~~ 76 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLL----KGRLVGVE------RLPVLLPVVPL------LKGPLLY 76 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhc----cccccccc------ccccCcchhhc------cccchhH
Confidence 36888999999999999999999999876554332211 00000000 00000000000 0001111
Q ss_pred hhhhHHHHHHHh--hcCCCEEEEcCCccc---HHHHHHHhCCCeEEEecchHHHHHhhccccccccccCCCCCCCCcccC
Q 011765 96 DCLEEPMAKLLQ--SLAPDWLLFDFAAYW---LPARARELGIPSGFFSIFTAATLGYFGPSSVLINDSGDHLKTPEDYTR 170 (478)
Q Consensus 96 ~~~~~~l~~ll~--~~~pD~vI~D~~~~~---~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (478)
......+..+++ ..+||+|+.....+. +..++...++|++..........
T Consensus 77 ~~~~~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~------------------------- 131 (377)
T cd03798 77 LLAARALLKLLKLKRFRPDLIHAHFAYPDGFAAALLKRKLGIPLVVTLHGSDVNL------------------------- 131 (377)
T ss_pred HHHHHHHHHHHhcccCCCCEEEEeccchHHHHHHHHHHhcCCCEEEEeecchhcc-------------------------
Confidence 223345666666 889999998854432 34566777889887644211100
Q ss_pred CCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHhh--cCCCeeeeccC
Q 011765 171 VPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQL--HRKPVIPVGQL 248 (478)
Q Consensus 171 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~--~~~~~~~vGp~ 248 (478)
.... . + ...........++.+++.+ ....+..... ...++..++..
T Consensus 132 ---~~~~-----~-------~------------~~~~~~~~~~~~d~ii~~s-----~~~~~~~~~~~~~~~~~~~i~~~ 179 (377)
T cd03798 132 ---LPRK-----R-------L------------LRALLRRALRRADAVIAVS-----EALADELKALGIDPEKVTVIPNG 179 (377)
T ss_pred ---cCch-----h-------h------------HHHHHHHHHhcCCeEEeCC-----HHHHHHHHHhcCCCCceEEcCCC
Confidence 0000 0 0 0001112244667777766 3333333333 23345666533
Q ss_pred CCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccC-CCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCC
Q 011765 249 PTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAK-PSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIEL 327 (478)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~ 327 (478)
.....-. ....... ..+.. .+++.+++..|+... ...+.+...++.+...+..+.+.+.+... ....+
T Consensus 180 ~~~~~~~-----~~~~~~~-~~~~~-~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~----~~~~~ 248 (377)
T cd03798 180 VDTERFS-----PADRAEA-RKLGL-PEDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGP----LREAL 248 (377)
T ss_pred cCcccCC-----CcchHHH-HhccC-CCCceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCc----chHHH
Confidence 3221110 0001000 11111 223467777887664 22344444444444433344444433211 00000
Q ss_pred Chhhhhhc-CCCcEEEeccCChh---hhhcCCCceeee----eccChhhHHHHHHhCCcEeccccccchhhHHHHHhhcC
Q 011765 328 PDGFEERT-RGRGVVYTSWAPQL---AILAHDSVGGFL----THAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQ 399 (478)
Q Consensus 328 p~~~~~~~-~~~n~~~~~~vpq~---~vL~~~~~~~~I----tHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g 399 (478)
- ...++. ..+++.+..++++. .++..+++ +| +-|..+++.||+++|+|+|+.+. ......+.+.+
T Consensus 249 ~-~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~----~~~~~~~~~~~ 321 (377)
T cd03798 249 E-ALAAELGLEDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDV----GGIPEIITDGE 321 (377)
T ss_pred H-HHHHhcCCcceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecC----CChHHHhcCCc
Confidence 0 111111 24588888999875 45677777 55 22445789999999999998654 34555667777
Q ss_pred eEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHH
Q 011765 400 IVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLK 463 (478)
Q Consensus 400 ~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~ 463 (478)
.|...+.. +.+++.+++.++++ ++.. +..++..+...+.-..+..++.+.+.++
T Consensus 322 ~g~~~~~~------~~~~l~~~i~~~~~---~~~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 375 (377)
T cd03798 322 NGLLVPPG------DPEALAEAILRLLA---DPWL-RLGRAARRRVAERFSWENVAERLLELYR 375 (377)
T ss_pred ceeEECCC------CHHHHHHHHHHHhc---CcHH-HHhHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77777653 88999999999999 5553 2333333333333333445555555554
No 61
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.23 E-value=7.4e-09 Score=101.50 Aligned_cols=142 Identities=17% Similarity=0.154 Sum_probs=89.0
Q ss_pred ceEEEEeCcccCCCHHHHHHHHHHHHhCC-CCEEEEEecCCCCCCCCCCCCChhhhh---hc-CCCcEEEeccCChhh--
Q 011765 278 SVVYVAFGSEAKPSQEELTEIALGLELSK-LPFFWVLKKRLGQADTEPIELPDGFEE---RT-RGRGVVYTSWAPQLA-- 350 (478)
Q Consensus 278 ~~v~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~~p~~~~~---~~-~~~n~~~~~~vpq~~-- 350 (478)
..+++..|+.. ....+..+++++++.. .+++++-.+. ..+.+.+ +. ..+|+.+..|+|+.+
T Consensus 191 ~~~i~~~G~~~--~~K~~~~li~a~~~l~~~~l~i~G~g~----------~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~ 258 (357)
T cd03795 191 RPFFLFVGRLV--YYKGLDVLLEAAAALPDAPLVIVGEGP----------LEAELEALAAALGLLDRVRFLGRLDDEEKA 258 (357)
T ss_pred CcEEEEecccc--cccCHHHHHHHHHhccCcEEEEEeCCh----------hHHHHHHHHHhcCCcceEEEcCCCCHHHHH
Confidence 46677788765 3344555667776665 4444432211 1111221 11 246899999999854
Q ss_pred -hhcCCCceeeee---ccCh-hhHHHHHHhCCcEeccccccchhhHHHHHhh-cCeEEEeeccCCCCcccHHHHHHHHHH
Q 011765 351 -ILAHDSVGGFLT---HAGW-SSVVEALQFGMPLIVLTCYADQGLNAKLLEE-KQIVELIPRDEGDGFFTRNSVAESLRL 424 (478)
Q Consensus 351 -vL~~~~~~~~It---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~-~g~G~~l~~~~~~~~~~~~~l~~~i~~ 424 (478)
++..+++.++.+ +.|. .++.||+++|+|+|+....... ..+.+ .+.|...+.. +.++++++|.+
T Consensus 259 ~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~----~~i~~~~~~g~~~~~~------d~~~~~~~i~~ 328 (357)
T cd03795 259 ALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGG----SYVNLHGVTGLVVPPG------DPAALAEAIRR 328 (357)
T ss_pred HHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCch----hHHhhCCCceEEeCCC------CHHHHHHHHHH
Confidence 666788833333 2343 4799999999999996544443 33443 5778777653 79999999999
Q ss_pred HhcccchHHHHHHHHHHHHH
Q 011765 425 VLVEEKGQIYRDKAKEMKGL 444 (478)
Q Consensus 425 ll~~~~~~~~~~~a~~~~~~ 444 (478)
+++ |++.++++.+-+..
T Consensus 329 l~~---~~~~~~~~~~~~~~ 345 (357)
T cd03795 329 LLE---DPELRERLGEAARE 345 (357)
T ss_pred HHH---CHHHHHHHHHHHHH
Confidence 999 77665555544433
No 62
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.22 E-value=6.5e-09 Score=104.75 Aligned_cols=99 Identities=15% Similarity=0.094 Sum_probs=68.3
Q ss_pred hhhhcCCCceeeeec-----cChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHH
Q 011765 349 LAILAHDSVGGFLTH-----AGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLR 423 (478)
Q Consensus 349 ~~vL~~~~~~~~ItH-----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~ 423 (478)
..+++.+++ ++.. +|..++.||+++|+|+|+-|...++......+.+.|+++.. -+.++|+++|.
T Consensus 314 ~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~g~~~~~--------~d~~~La~~l~ 383 (425)
T PRK05749 314 GLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQAGAAIQV--------EDAEDLAKAVT 383 (425)
T ss_pred HHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHCCCeEEE--------CCHHHHHHHHH
Confidence 456677776 4331 33345999999999999999988888888888777766652 27899999999
Q ss_pred HHhcccchHHHHHHHHHHHHHhc--ccCChHHHHHHHHH
Q 011765 424 LVLVEEKGQIYRDKAKEMKGLFG--DKGRHDRYVDNFLN 460 (478)
Q Consensus 424 ~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~i~~ 460 (478)
++++ |++.++++.+-+.... ..+...+.++.+.+
T Consensus 384 ~ll~---~~~~~~~m~~~a~~~~~~~~~~~~~~~~~l~~ 419 (425)
T PRK05749 384 YLLT---DPDARQAYGEAGVAFLKQNQGALQRTLQLLEP 419 (425)
T ss_pred HHhc---CHHHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 9999 7776666555544433 23433444444443
No 63
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.22 E-value=1e-07 Score=95.37 Aligned_cols=112 Identities=13% Similarity=0.104 Sum_probs=77.0
Q ss_pred CcEEEeccCChh---hhhcCCCceeeee---ccCh-hhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCC
Q 011765 338 RGVVYTSWAPQL---AILAHDSVGGFLT---HAGW-SSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGD 410 (478)
Q Consensus 338 ~n~~~~~~vpq~---~vL~~~~~~~~It---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~ 410 (478)
+++.+..+++.. ++++.+++ +|. +-|. .++.||+++|+|+|+... ......+.+.+.|...+..
T Consensus 283 ~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~----~~~~e~i~~~~~g~~~~~~--- 353 (405)
T TIGR03449 283 DRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARV----GGLPVAVADGETGLLVDGH--- 353 (405)
T ss_pred ceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecC----CCcHhhhccCCceEECCCC---
Confidence 578888999874 46788887 662 2333 589999999999999654 3344556666778877653
Q ss_pred CcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHh
Q 011765 411 GFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLKN 464 (478)
Q Consensus 411 ~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~ 464 (478)
+.++++++|.++++ +++.++++..-+....+.-.-+..++.+++.+.+
T Consensus 354 ---d~~~la~~i~~~l~---~~~~~~~~~~~~~~~~~~fsw~~~~~~~~~~y~~ 401 (405)
T TIGR03449 354 ---DPADWADALARLLD---DPRTRIRMGAAAVEHAAGFSWAATADGLLSSYRD 401 (405)
T ss_pred ---CHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 78999999999999 6666555544444333333345566666666654
No 64
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.20 E-value=1.9e-08 Score=98.86 Aligned_cols=112 Identities=15% Similarity=0.155 Sum_probs=73.6
Q ss_pred CcEEEeccCC-hh---hhhcCCCceeeeecc----ChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCC
Q 011765 338 RGVVYTSWAP-QL---AILAHDSVGGFLTHA----GWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEG 409 (478)
Q Consensus 338 ~n~~~~~~vp-q~---~vL~~~~~~~~ItHg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~ 409 (478)
.++.+..|++ +. .+++.+++ +|.-. ..+++.||+++|+|+|+.... .....+.+.+.|..++..
T Consensus 244 ~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~~~~~~g~~~~~~-- 315 (365)
T cd03825 244 FPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIVDHGVTGYLAKPG-- 315 (365)
T ss_pred CceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCC----CChhheeCCCceEEeCCC--
Confidence 3677888998 43 46777887 77642 347999999999999986542 333344444567766653
Q ss_pred CCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhc-ccCChHHHHHHHHHHHHh
Q 011765 410 DGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFG-DKGRHDRYVDNFLNYLKN 464 (478)
Q Consensus 410 ~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~i~~~~~~ 464 (478)
+.+++.+++.++++ +++.++++.+-+.... +.-+.+..++.+++.+++
T Consensus 316 ----~~~~~~~~l~~l~~---~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~~ 364 (365)
T cd03825 316 ----DPEDLAEGIEWLLA---DPDEREELGEAARELAENEFDSRVQAKRYLSLYEE 364 (365)
T ss_pred ----CHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 78999999999998 6664444444333332 333445666766666543
No 65
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.17 E-value=5.4e-08 Score=95.49 Aligned_cols=110 Identities=16% Similarity=0.275 Sum_probs=71.9
Q ss_pred CCcEEEec-cCChh---hhhcCCCceeee--ec----cChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeec
Q 011765 337 GRGVVYTS-WAPQL---AILAHDSVGGFL--TH----AGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPR 406 (478)
Q Consensus 337 ~~n~~~~~-~vpq~---~vL~~~~~~~~I--tH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~ 406 (478)
..++.+.. |+|+. .++..+++ +| ++ |..+++.||+++|+|+|+.+..+ ...+.+.+.|...+.
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~~~g~~~~~ 318 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDGGTGLLVPP 318 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeCCCcEEEcC
Confidence 34676664 48864 46677777 55 22 33468999999999999977543 334555677777765
Q ss_pred cCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHH
Q 011765 407 DEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYL 462 (478)
Q Consensus 407 ~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~ 462 (478)
. +.+++.+++.++++ +++.++++.+-+....+.-.-+..++.+.+.+
T Consensus 319 ~------d~~~~~~~l~~l~~---~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 365 (366)
T cd03822 319 G------DPAALAEAIRRLLA---DPELAQALRARAREYARAMSWERVAERYLRLL 365 (366)
T ss_pred C------CHHHHHHHHHHHHc---ChHHHHHHHHHHHHHHhhCCHHHHHHHHHHHh
Confidence 3 78999999999999 65555555444444443344455555555543
No 66
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.16 E-value=6.1e-10 Score=109.75 Aligned_cols=142 Identities=15% Similarity=0.091 Sum_probs=88.1
Q ss_pred CCceEEEEeCcccCC-CHHHHHHHHHHHHhCCC-CEEEEEecCCCCCCCCCCCCChhhhhhcC--CCcEEEeccCChh--
Q 011765 276 KGSVVYVAFGSEAKP-SQEELTEIALGLELSKL-PFFWVLKKRLGQADTEPIELPDGFEERTR--GRGVVYTSWAPQL-- 349 (478)
Q Consensus 276 ~~~~v~vs~Gs~~~~-~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~~p~~~~~~~~--~~n~~~~~~vpq~-- 349 (478)
+++.|++++|..... ....+..++++++.... ++.+++..... ....+-+ ...+.. .+++.+..+.+..
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~----~~~~l~~-~~~~~~~~~~~v~~~~~~~~~~~ 271 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPR----TRPRIRE-AGLEFLGHHPNVLLISPLGYLYF 271 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCC----hHHHHHH-HHHhhccCCCCEEEECCcCHHHH
Confidence 355788888876643 35667778888866533 24444432211 0111111 111111 3577776665543
Q ss_pred -hhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcc
Q 011765 350 -AILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVE 428 (478)
Q Consensus 350 -~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~ 428 (478)
.++..+++ ||+..| |.+.||+++|+|+|+++.. |. +..+.+.|++..+. + +.++|.++|.++++
T Consensus 272 ~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~~g~~~~~~--~-----~~~~i~~~i~~ll~- 336 (363)
T cd03786 272 LLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVESGTNVLVG--T-----DPEAILAAIEKLLS- 336 (363)
T ss_pred HHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhheeeEEecC--C-----CHHHHHHHHHHHhc-
Confidence 45666777 999998 7788999999999998743 22 33455567665553 2 67899999999999
Q ss_pred cchHHHHHHHH
Q 011765 429 EKGQIYRDKAK 439 (478)
Q Consensus 429 ~~~~~~~~~a~ 439 (478)
++..+++++
T Consensus 337 --~~~~~~~~~ 345 (363)
T cd03786 337 --DEFAYSLMS 345 (363)
T ss_pred --CchhhhcCC
Confidence 666555553
No 67
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.16 E-value=1.8e-09 Score=106.57 Aligned_cols=157 Identities=15% Similarity=0.207 Sum_probs=92.9
Q ss_pred CceEEEEeCcccCCCHHHHHHHHHHHHhC-----CCCEEEEEecCCCCCCCCCCCCChhhhhhc-CCCcEEEeccCChh-
Q 011765 277 GSVVYVAFGSEAKPSQEELTEIALGLELS-----KLPFFWVLKKRLGQADTEPIELPDGFEERT-RGRGVVYTSWAPQL- 349 (478)
Q Consensus 277 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~-~~~n~~~~~~vpq~- 349 (478)
++.++++++-.... ...+..+++++.++ +.++++...++. ..-..+.+.. ..+++.+.+.+++.
T Consensus 197 ~~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~ 267 (365)
T TIGR00236 197 KRYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVHLNP--------VVREPLHKHLGDSKRVHLIEPLEYLD 267 (365)
T ss_pred CCEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECCCCh--------HHHHHHHHHhCCCCCEEEECCCChHH
Confidence 34666665433221 13466677766543 345555433211 1111111111 23478887776654
Q ss_pred --hhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhc
Q 011765 350 --AILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLV 427 (478)
Q Consensus 350 --~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~ 427 (478)
.++..+++ +|+-.|.. +.||+++|+|+|.++...+++. +.+.|.+..+. -++++|.+++.++++
T Consensus 268 ~~~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~~g~~~lv~-------~d~~~i~~ai~~ll~ 333 (365)
T TIGR00236 268 FLNLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVEAGTNKLVG-------TDKENITKAAKRLLT 333 (365)
T ss_pred HHHHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH----HHhcCceEEeC-------CCHHHHHHHHHHHHh
Confidence 45666776 99877644 7999999999999876555542 33467776552 278999999999999
Q ss_pred ccchHHHHHHHHHHHHHhcccCChHHHHHHHH
Q 011765 428 EEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFL 459 (478)
Q Consensus 428 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~ 459 (478)
+++.++++..-...+.+++.+.+.++.+.
T Consensus 334 ---~~~~~~~~~~~~~~~g~~~a~~ri~~~l~ 362 (365)
T TIGR00236 334 ---DPDEYKKMSNASNPYGDGEASERIVEELL 362 (365)
T ss_pred ---ChHHHHHhhhcCCCCcCchHHHHHHHHHH
Confidence 77777776554444444443344444433
No 68
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.15 E-value=6.5e-08 Score=94.81 Aligned_cols=148 Identities=17% Similarity=0.125 Sum_probs=84.5
Q ss_pred CceEEEEeCcccC-CCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhh---hhcC-CCcEEEeccCCh-hh
Q 011765 277 GSVVYVAFGSEAK-PSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFE---ERTR-GRGVVYTSWAPQ-LA 350 (478)
Q Consensus 277 ~~~v~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~---~~~~-~~n~~~~~~vpq-~~ 350 (478)
+..+++..|+... ...+.+.+.+..+...+..+.+.+-+... ........+. ++.. .+++.+..|.+. ..
T Consensus 184 ~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~----~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 259 (355)
T cd03819 184 GKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQ----GRRFYYAELLELIKRLGLQDRVTFVGHCSDMPA 259 (355)
T ss_pred CceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCc----ccchHHHHHHHHHHHcCCcceEEEcCCcccHHH
Confidence 4467777887664 33455666666665533333333222211 1111111111 1112 347888888544 55
Q ss_pred hhcCCCceeeeec--cCh-hhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhc
Q 011765 351 ILAHDSVGGFLTH--AGW-SSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLV 427 (478)
Q Consensus 351 vL~~~~~~~~ItH--gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~ 427 (478)
++..+++-++-++ -|+ +++.||+++|+|+|+... ......+.+.+.|..++.. +.+++.++|..++.
T Consensus 260 ~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i~~~~~g~~~~~~------~~~~l~~~i~~~~~ 329 (355)
T cd03819 260 AYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETVRPGETGLLVPPG------DAEALAQALDQILS 329 (355)
T ss_pred HHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHHhCCCceEEeCCC------CHHHHHHHHHHHHh
Confidence 7888888333331 233 699999999999998543 3445566666688888653 88999999976654
Q ss_pred ccchHHHHHHHHH
Q 011765 428 EEKGQIYRDKAKE 440 (478)
Q Consensus 428 ~~~~~~~~~~a~~ 440 (478)
. +++.++++.+
T Consensus 330 ~--~~~~~~~~~~ 340 (355)
T cd03819 330 L--LPEGRAKMFA 340 (355)
T ss_pred h--CHHHHHHHHH
Confidence 2 3444443333
No 69
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.13 E-value=2.6e-08 Score=96.66 Aligned_cols=322 Identities=16% Similarity=0.088 Sum_probs=163.4
Q ss_pred EEEEecCC--CccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCCh
Q 011765 8 QIAMFPWL--AFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPY 85 (478)
Q Consensus 8 ~il~~~~~--~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~ 85 (478)
||++++.. ..|+-..+..++++|.+.||+|++++............ .... ... ..... ....
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~----~~~~--~~~------~~~~~----~~~~ 64 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLP----SNVK--LIP------VRVLK----LKSL 64 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccc----cchh--hhc------eeeee----cccc
Confidence 46666544 45888889999999999999999999876544322211 0000 000 00000 0000
Q ss_pred hHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCC-cc-cHHHHHHHhCCCeEEEecchHHHHHhhccccccccccCCCCC
Q 011765 86 DEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFA-AY-WLPARARELGIPSGFFSIFTAATLGYFGPSSVLINDSGDHLK 163 (478)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~-~~-~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (478)
. .......+.+++++.+||+|++... .. ....++..+++|++.............
T Consensus 65 ~--------~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--------------- 121 (353)
T cd03811 65 R--------DLLAILRLRRLLRKEKPDVVISHLTTTPNVLALLAARLGTKLIVWEHNSLSLELKR--------------- 121 (353)
T ss_pred c--------chhHHHHHHHHHHhcCCCEEEEcCccchhHHHHHHhhcCCceEEEEcCcchhhhcc---------------
Confidence 0 0111235666777789999998875 22 222334444789887644222110000
Q ss_pred CCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHhhcC---C
Q 011765 164 TPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQLHR---K 240 (478)
Q Consensus 164 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~~---~ 240 (478)
. ... . .........++.+++.+... .+.....++ .
T Consensus 122 ----------~--------~~~-----------------~--~~~~~~~~~~d~ii~~s~~~-----~~~~~~~~~~~~~ 159 (353)
T cd03811 122 ----------K--------LRL-----------------L--LLIRKLYRRADKIVAVSEGV-----KEDLLKLLGIPPD 159 (353)
T ss_pred ----------c--------hhH-----------------H--HHHHhhccccceEEEeccch-----hhhHHHhhcCCcc
Confidence 0 000 0 11222345667777766332 222223332 3
Q ss_pred CeeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccC-CCHHHHHHHHHHHHhC--CCCEEEEEecCC
Q 011765 241 PVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAK-PSQEELTEIALGLELS--KLPFFWVLKKRL 317 (478)
Q Consensus 241 ~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~al~~~--~~~~i~~~~~~~ 317 (478)
++..+.+-....... ....... .+ ...+++.+++..|+... ...+.+.+.++.+... +.+++++-.+.
T Consensus 160 ~~~vi~~~~~~~~~~-----~~~~~~~--~~-~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~- 230 (353)
T cd03811 160 KIEVIYNPIDIEEIR-----ALAEEPL--EL-GIPPDGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILGDGP- 230 (353)
T ss_pred ccEEecCCcChhhcC-----cccchhh--hc-CCCCCceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEEcCCc-
Confidence 455555222211100 0000000 00 11234477788888763 2234444444444433 33444432211
Q ss_pred CCCCCCCCCCChhhhhhc-CCCcEEEeccCCh-hhhhcCCCceeeee--c--cChhhHHHHHHhCCcEeccccccchhhH
Q 011765 318 GQADTEPIELPDGFEERT-RGRGVVYTSWAPQ-LAILAHDSVGGFLT--H--AGWSSVVEALQFGMPLIVLTCYADQGLN 391 (478)
Q Consensus 318 ~~~~~~~~~~p~~~~~~~-~~~n~~~~~~vpq-~~vL~~~~~~~~It--H--gG~~s~~eal~~GvP~l~~P~~~DQ~~n 391 (478)
. ...+- ...++. ..+++.+..+.++ .+++..+++ +|. + |.-+++.||+++|+|+|+... ...
T Consensus 231 ~-----~~~~~-~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~----~~~ 298 (353)
T cd03811 231 L-----REELE-ALAKELGLADRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDC----PGP 298 (353)
T ss_pred c-----HHHHH-HHHHhcCCCccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCC----CCh
Confidence 0 00000 111222 2347777777765 457888887 552 2 334789999999999998544 366
Q ss_pred HHHHhhcCeEEEeeccCCCCcccHHHH---HHHHHHHhcccchHHHHHHHHH
Q 011765 392 AKLLEEKQIVELIPRDEGDGFFTRNSV---AESLRLVLVEEKGQIYRDKAKE 440 (478)
Q Consensus 392 a~~v~~~g~G~~l~~~~~~~~~~~~~l---~~~i~~ll~~~~~~~~~~~a~~ 440 (478)
+..+.+.+.|...+.. +.+.+ .+++.++++ ++..+++++.
T Consensus 299 ~e~i~~~~~g~~~~~~------~~~~~~~~~~~i~~~~~---~~~~~~~~~~ 341 (353)
T cd03811 299 REILEDGENGLLVPVG------DEAALAAAALALLDLLL---DPELRERLAA 341 (353)
T ss_pred HHHhcCCCceEEECCC------CHHHHHHHHHHHHhccC---ChHHHHHHHH
Confidence 6777777889888764 56666 555656666 5555555444
No 70
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=99.10 E-value=3.4e-08 Score=95.02 Aligned_cols=160 Identities=11% Similarity=0.095 Sum_probs=103.2
Q ss_pred CceEEEEeCcccCCCHHHHHHHHHHHHhCCCC-EEEEEecCCCCCCCCCCCCChhhhhhcCC-CcEEEeccCChhhhhcC
Q 011765 277 GSVVYVAFGSEAKPSQEELTEIALGLELSKLP-FFWVLKKRLGQADTEPIELPDGFEERTRG-RGVVYTSWAPQLAILAH 354 (478)
Q Consensus 277 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~-~i~~~~~~~~~~~~~~~~~p~~~~~~~~~-~n~~~~~~vpq~~vL~~ 354 (478)
+++|.+--||....-...+..+.++.+++..+ ..+++.... .. +.+.+.... ..+.+.+ ...+++..
T Consensus 167 ~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~--------~~-~~i~~~~~~~~~~~~~~--~~~~~m~~ 235 (347)
T PRK14089 167 EGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFF--------KG-KDLKEIYGDISEFEISY--DTHKALLE 235 (347)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCC--------cH-HHHHHHHhcCCCcEEec--cHHHHHHh
Confidence 36888988987642234445444555433222 233332211 11 222222211 1222222 33568888
Q ss_pred CCceeeeeccChhhHHHHHHhCCcEecccc--ccchhhHHHHHh---hcCeEEEe-------------eccCCCCcccHH
Q 011765 355 DSVGGFLTHAGWSSVVEALQFGMPLIVLTC--YADQGLNAKLLE---EKQIVELI-------------PRDEGDGFFTRN 416 (478)
Q Consensus 355 ~~~~~~ItHgG~~s~~eal~~GvP~l~~P~--~~DQ~~na~~v~---~~g~G~~l-------------~~~~~~~~~~~~ 416 (478)
+++ +|+-.|..|+ |+..+|+|+|+ ++ ..-|+.||+++. ..|++-.+ -..+ +|++
T Consensus 236 aDl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~igL~Nii~~~~~~~~vvPEllQ~~----~t~~ 307 (347)
T PRK14089 236 AEF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHIGLANIFFDFLGKEPLHPELLQEF----VTVE 307 (347)
T ss_pred hhH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCeeehHHHhcCCCcccccCchhhccc----CCHH
Confidence 888 9999999999 99999999988 44 457899999998 55655555 2233 8999
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHH
Q 011765 417 SVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLN 460 (478)
Q Consensus 417 ~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~ 460 (478)
.|.+++.+ +. .+.+++...++++.+.. +++.++++.+.+
T Consensus 308 ~la~~i~~-~~---~~~~~~~~~~l~~~l~~-~a~~~~A~~i~~ 346 (347)
T PRK14089 308 NLLKAYKE-MD---REKFFKKSKELREYLKH-GSAKNVAKILKE 346 (347)
T ss_pred HHHHHHHH-HH---HHHHHHHHHHHHHHhcC-CHHHHHHHHHhc
Confidence 99999988 34 57899999999998854 777777776654
No 71
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.10 E-value=2.9e-07 Score=91.71 Aligned_cols=86 Identities=15% Similarity=0.081 Sum_probs=61.1
Q ss_pred CCcEEEeccCChh---hhhcCCCceeeeec---cC-hhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCC
Q 011765 337 GRGVVYTSWAPQL---AILAHDSVGGFLTH---AG-WSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEG 409 (478)
Q Consensus 337 ~~n~~~~~~vpq~---~vL~~~~~~~~ItH---gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~ 409 (478)
.+++.+..++|+. .++..+++ ++.. -| -.++.||+++|+|+|+.-.. .....+.+.+.|...+
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~e~i~~~~~g~~~~---- 348 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPLETVVDGETGFLCE---- 348 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCC----CcHHHhccCCceEEeC----
Confidence 3689999999986 46777887 6632 22 25789999999999996443 3444565556777764
Q ss_pred CCcccHHHHHHHHHHHhcccchHHHHHHH
Q 011765 410 DGFFTRNSVAESLRLVLVEEKGQIYRDKA 438 (478)
Q Consensus 410 ~~~~~~~~l~~~i~~ll~~~~~~~~~~~a 438 (478)
.+.++++++|.++++ +++.++++
T Consensus 349 ---~~~~~~a~~i~~l~~---~~~~~~~~ 371 (392)
T cd03805 349 ---PTPEEFAEAMLKLAN---DPDLADRM 371 (392)
T ss_pred ---CCHHHHHHHHHHHHh---ChHHHHHH
Confidence 267899999999999 55544443
No 72
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.06 E-value=3.9e-07 Score=89.31 Aligned_cols=92 Identities=21% Similarity=0.143 Sum_probs=64.4
Q ss_pred CCcEEEeccCChhh---hhcCCCceeeee--c-cC-hhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCC
Q 011765 337 GRGVVYTSWAPQLA---ILAHDSVGGFLT--H-AG-WSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEG 409 (478)
Q Consensus 337 ~~n~~~~~~vpq~~---vL~~~~~~~~It--H-gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~ 409 (478)
.+++.+..|+++.+ ++..+++ +|. + .| .+++.||+++|+|+|+.+. ......+.+ +.|...+.
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~~~~~~-~~~~~~~~--- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDK----VPWQELIEY-GCGWVVDD--- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCC----CCHHHHhhc-CceEEeCC---
Confidence 45888999999644 5677787 553 2 22 3689999999999999653 344555555 77776653
Q ss_pred CCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHh
Q 011765 410 DGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLF 445 (478)
Q Consensus 410 ~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~ 445 (478)
+.+++.++|.++++ +++.++++.+-+...
T Consensus 331 ----~~~~~~~~i~~l~~---~~~~~~~~~~~~~~~ 359 (375)
T cd03821 331 ----DVDALAAALRRALE---LPQRLKAMGENGRAL 359 (375)
T ss_pred ----ChHHHHHHHHHHHh---CHHHHHHHHHHHHHH
Confidence 45999999999999 655555555444443
No 73
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.06 E-value=2.3e-07 Score=90.78 Aligned_cols=144 Identities=17% Similarity=0.156 Sum_probs=83.7
Q ss_pred CceEEEEeCcccC-CCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhc-CCCcEEEeccCChhh---h
Q 011765 277 GSVVYVAFGSEAK-PSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERT-RGRGVVYTSWAPQLA---I 351 (478)
Q Consensus 277 ~~~v~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~-~~~n~~~~~~vpq~~---v 351 (478)
++.+++.+|+... .+.+.+.+.+..+...+.++.+.+-+... ....+ ..+.++. ..+++.+..++|+.+ +
T Consensus 178 ~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~----~~~~~-~~~~~~~~~~~~v~~~g~~~~~~l~~~ 252 (355)
T cd03799 178 EPLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDGP----LRDEL-EALIAELGLEDRVTLLGAKSQEEVREL 252 (355)
T ss_pred CCeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECCc----cHHHH-HHHHHHcCCCCeEEECCcCChHHHHHH
Confidence 3466777787653 23344444444444433333333322211 00000 0111111 235899999998644 6
Q ss_pred hcCCCceeeee--c--------cChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHH
Q 011765 352 LAHDSVGGFLT--H--------AGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAES 421 (478)
Q Consensus 352 L~~~~~~~~It--H--------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~ 421 (478)
+..+++ +|. . |.-+++.||+++|+|+|+.+... ....+.+...|...+.. +.+++.++
T Consensus 253 ~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~~~~g~~~~~~------~~~~l~~~ 320 (355)
T cd03799 253 LRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVEDGETGLLVPPG------DPEALADA 320 (355)
T ss_pred HHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhCCCceEEeCCC------CHHHHHHH
Confidence 667787 554 2 33479999999999999865432 33345444578777653 78999999
Q ss_pred HHHHhcccchHHHHHHHHH
Q 011765 422 LRLVLVEEKGQIYRDKAKE 440 (478)
Q Consensus 422 i~~ll~~~~~~~~~~~a~~ 440 (478)
|.++++ ++..++++.+
T Consensus 321 i~~~~~---~~~~~~~~~~ 336 (355)
T cd03799 321 IERLLD---DPELRREMGE 336 (355)
T ss_pred HHHHHh---CHHHHHHHHH
Confidence 999999 6554444433
No 74
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.02 E-value=4.4e-07 Score=90.60 Aligned_cols=165 Identities=11% Similarity=0.062 Sum_probs=88.4
Q ss_pred CceEEEEeCcccC-CCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhh---hhcC-CCcEEEeccCChhh-
Q 011765 277 GSVVYVAFGSEAK-PSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFE---ERTR-GRGVVYTSWAPQLA- 350 (478)
Q Consensus 277 ~~~v~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~---~~~~-~~n~~~~~~vpq~~- 350 (478)
+..+++..|.... .+.+.+.+.+..+.+...++.+.+-+... ..+.+. ++.. .+++.+..|+|+.+
T Consensus 192 ~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~--------~~~~l~~~~~~~~l~~~v~~~G~~~~~~~ 263 (398)
T cd03796 192 DKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFIIGGDGP--------KRILLEEMREKYNLQDRVELLGAVPHERV 263 (398)
T ss_pred CceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEEEeCCc--------hHHHHHHHHHHhCCCCeEEEeCCCCHHHH
Confidence 4477777887654 23344444444443333333333322211 111122 2222 34688889998744
Q ss_pred --hhcCCCceeeee---ccCh-hhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHH
Q 011765 351 --ILAHDSVGGFLT---HAGW-SSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRL 424 (478)
Q Consensus 351 --vL~~~~~~~~It---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ 424 (478)
+++.+++ +|. +-|. .++.||+++|+|+|+.+..+ ....+. .|-+... . -+.+++.+++.+
T Consensus 264 ~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~-~~~~~~~--~-----~~~~~l~~~l~~ 329 (398)
T cd03796 264 RDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLP-PDMILLA--E-----PDVESIVRKLEE 329 (398)
T ss_pred HHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhee-CCceeec--C-----CCHHHHHHHHHH
Confidence 6677777 653 2244 49999999999999977643 223333 3433222 2 377999999999
Q ss_pred HhcccchHHHH-HHHHHHHHHhcccCChHHHHHHHHHHHHhcc
Q 011765 425 VLVEEKGQIYR-DKAKEMKGLFGDKGRHDRYVDNFLNYLKNHR 466 (478)
Q Consensus 425 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 466 (478)
+++ +..-+ ...+...+.+.+.-+-+..++..++.+++..
T Consensus 330 ~l~---~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~l~ 369 (398)
T cd03796 330 AIS---ILRTGKHDPWSFHNRVKKMYSWEDVAKRTEKVYDRIL 369 (398)
T ss_pred HHh---ChhhhhhHHHHHHHHHHhhCCHHHHHHHHHHHHHHHh
Confidence 998 32211 1122222333343444555566666555433
No 75
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.01 E-value=6.4e-07 Score=89.05 Aligned_cols=170 Identities=12% Similarity=0.162 Sum_probs=94.6
Q ss_pred ceEEEEeCcccCCCHHHHHHHHHHHHhC--CCCEEEEEecCCCCCCCCCCCCChhhhhhc-----CCCcEEE-eccCChh
Q 011765 278 SVVYVAFGSEAKPSQEELTEIALGLELS--KLPFFWVLKKRLGQADTEPIELPDGFEERT-----RGRGVVY-TSWAPQL 349 (478)
Q Consensus 278 ~~v~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~-----~~~n~~~-~~~vpq~ 349 (478)
.++++..|.... ...+..++++++.. +.+++++.++.. ...+-+.+.+.. ...++.. ..+++..
T Consensus 201 ~~~i~~~Grl~~--~Kg~~~li~a~~~l~~~~~l~i~g~g~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 272 (388)
T TIGR02149 201 RPYILFVGRITR--QKGVPHLLDAVHYIPKDVQVVLCAGAPD------TPEVAEEVRQAVALLDRNRTGIIWINKMLPKE 272 (388)
T ss_pred ceEEEEEccccc--ccCHHHHHHHHHHHhhcCcEEEEeCCCC------cHHHHHHHHHHHHHhccccCceEEecCCCCHH
Confidence 356667787663 34455555666543 345555443321 111111111111 1123443 3567764
Q ss_pred ---hhhcCCCceeeeec----cChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHH
Q 011765 350 ---AILAHDSVGGFLTH----AGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESL 422 (478)
Q Consensus 350 ---~vL~~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i 422 (478)
+++..+++ +|.= +...++.||+++|+|+|+... ......+++.+.|..++..+.+..-..+++.++|
T Consensus 273 ~~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i 346 (388)
T TIGR02149 273 ELVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVVDGETGFLVPPDNSDADGFQAELAKAI 346 (388)
T ss_pred HHHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhhCCCceEEcCCCCCcccchHHHHHHHH
Confidence 46777887 6642 223578999999999999654 4466667666788888765300001128999999
Q ss_pred HHHhcccchHHHHHHHHHHHHH-hcccCChHHHHHHHHHHHHh
Q 011765 423 RLVLVEEKGQIYRDKAKEMKGL-FGDKGRHDRYVDNFLNYLKN 464 (478)
Q Consensus 423 ~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~i~~~~~~ 464 (478)
.++++ |++.++++.+-+.. ..+.-.-+..++.+++.+++
T Consensus 347 ~~l~~---~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~y~~ 386 (388)
T TIGR02149 347 NILLA---DPELAKKMGIAGRKRAEEEFSWGSIAKKTVEMYRK 386 (388)
T ss_pred HHHHh---CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99998 66655554443333 22333345566666666654
No 76
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.00 E-value=1.9e-07 Score=91.66 Aligned_cols=109 Identities=16% Similarity=0.144 Sum_probs=70.2
Q ss_pred CcEEEeccCCh-hhhhcCCCceeeeec----cChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCc
Q 011765 338 RGVVYTSWAPQ-LAILAHDSVGGFLTH----AGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGF 412 (478)
Q Consensus 338 ~n~~~~~~vpq-~~vL~~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~ 412 (478)
+++.+..+..+ .+++..+++ +|.- |..+++.||+++|+|+|+. |...+...+++ .|.....
T Consensus 245 ~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~--~g~~~~~------ 310 (360)
T cd04951 245 NRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGD--SGLIVPI------ 310 (360)
T ss_pred CcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecC--CceEeCC------
Confidence 46777777655 567888887 5532 2247899999999999974 45556666665 3444443
Q ss_pred ccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHH
Q 011765 413 FTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYL 462 (478)
Q Consensus 413 ~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~ 462 (478)
-+.+++.+++.++++. ++.+++.+..-++.+.+.=+-+..++.+++.+
T Consensus 311 ~~~~~~~~~i~~ll~~--~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y 358 (360)
T cd04951 311 SDPEALANKIDEILKM--SGEERDIIGARRERIVKKFSINSIVQQWLTLY 358 (360)
T ss_pred CCHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 2888999999999942 45666655554444444333344555555543
No 77
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.99 E-value=1.4e-07 Score=92.81 Aligned_cols=129 Identities=16% Similarity=0.231 Sum_probs=78.1
Q ss_pred ceEEEEeCcccCCCHHHHHHHHHHHHhCCCC--EEEEEecCCCCCCCCCCCCChhhhhhc----CCCcEEEeccCCh--h
Q 011765 278 SVVYVAFGSEAKPSQEELTEIALGLELSKLP--FFWVLKKRLGQADTEPIELPDGFEERT----RGRGVVYTSWAPQ--L 349 (478)
Q Consensus 278 ~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~--~i~~~~~~~~~~~~~~~~~p~~~~~~~----~~~n~~~~~~vpq--~ 349 (478)
+.+++..|.........+..+++++.+.... ++++-.+. .. +.+.+.. ..+++.+..|+++ .
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~------~~----~~l~~~~~~~~l~~~v~f~G~~~~~~~ 249 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGS------DF----EKCKAYSRELGIEQRIIWHGWQSQPWE 249 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCc------cH----HHHHHHHHHcCCCCeEEEecccCCcHH
Confidence 3666778876533344566677777655333 33332221 11 1222111 2357888888754 2
Q ss_pred h---hhcCCCceeeee--c--cChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHH
Q 011765 350 A---ILAHDSVGGFLT--H--AGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESL 422 (478)
Q Consensus 350 ~---vL~~~~~~~~It--H--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i 422 (478)
. .+..+++ +|. + |--.++.||+++|+|+|+.-. .......+++...|..++.. +.++++++|
T Consensus 250 ~~~~~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~---~~g~~eiv~~~~~G~lv~~~------d~~~la~~i 318 (359)
T PRK09922 250 VVQQKIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDC---MSGPRDIIKPGLNGELYTPG------NIDEFVGKL 318 (359)
T ss_pred HHHHHHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCC---CCChHHHccCCCceEEECCC------CHHHHHHHH
Confidence 2 3444566 663 3 224799999999999998651 22233345555678877653 899999999
Q ss_pred HHHhc
Q 011765 423 RLVLV 427 (478)
Q Consensus 423 ~~ll~ 427 (478)
.++++
T Consensus 319 ~~l~~ 323 (359)
T PRK09922 319 NKVIS 323 (359)
T ss_pred HHHHh
Confidence 99999
No 78
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.98 E-value=4e-07 Score=88.37 Aligned_cols=128 Identities=11% Similarity=0.019 Sum_probs=76.7
Q ss_pred eEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhc--CCCcEEEeccCChhh---hhc
Q 011765 279 VVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERT--RGRGVVYTSWAPQLA---ILA 353 (478)
Q Consensus 279 ~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~--~~~n~~~~~~vpq~~---vL~ 353 (478)
.+++..|... .......+++++++.+.+++++-.+... .. ........ ..+++.+..++++.+ +++
T Consensus 172 ~~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~~~------~~-~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~ 242 (335)
T cd03802 172 DYLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVSDP------DY-FYREIAPELLDGPDIEYLGEVGGAEKAELLG 242 (335)
T ss_pred CEEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCCCH------HH-HHHHHHHhcccCCcEEEeCCCCHHHHHHHHH
Confidence 3455567764 3344455667777777776655432210 00 01111111 146899999998854 577
Q ss_pred CCCceeeee--ccCh-hhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhc
Q 011765 354 HDSVGGFLT--HAGW-SSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLV 427 (478)
Q Consensus 354 ~~~~~~~It--HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~ 427 (478)
.+++-++-+ +-|. .++.||+++|+|+|+.... .....+.+...|...+ ..+++.+++.++++
T Consensus 243 ~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i~~~~~g~l~~--------~~~~l~~~l~~l~~ 307 (335)
T cd03802 243 NARALLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVVEDGVTGFLVD--------SVEELAAAVARADR 307 (335)
T ss_pred hCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCC----CchhheeCCCcEEEeC--------CHHHHHHHHHHHhc
Confidence 788733323 2344 5899999999999986543 3334444433566553 37889999998876
No 79
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.97 E-value=4.6e-07 Score=89.29 Aligned_cols=89 Identities=18% Similarity=0.244 Sum_probs=65.8
Q ss_pred CCcEEEeccCChhh---hhcCCCceeeeec----------cChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEE
Q 011765 337 GRGVVYTSWAPQLA---ILAHDSVGGFLTH----------AGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVEL 403 (478)
Q Consensus 337 ~~n~~~~~~vpq~~---vL~~~~~~~~ItH----------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~ 403 (478)
.+++.+..++|+.+ ++..+++ +|.- |-.+++.||+++|+|+|+.+.. .++..+.+.+.|..
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~~~g~~ 317 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVEDGETGLL 317 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----CchhheecCCeeEE
Confidence 35788888998754 5777787 5532 2247999999999999986654 36666777788888
Q ss_pred eeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHH
Q 011765 404 IPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKE 440 (478)
Q Consensus 404 l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~ 440 (478)
.+.. +.+++.++|.++++ |++.++++.+
T Consensus 318 ~~~~------d~~~l~~~i~~l~~---~~~~~~~~~~ 345 (367)
T cd05844 318 VPEG------DVAALAAALGRLLA---DPDLRARMGA 345 (367)
T ss_pred ECCC------CHHHHHHHHHHHHc---CHHHHHHHHH
Confidence 7753 78999999999999 6665544433
No 80
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.97 E-value=1.3e-06 Score=93.85 Aligned_cols=184 Identities=10% Similarity=0.159 Sum_probs=100.7
Q ss_pred hhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCC-----CCEEEEEecCCCCCCCC--CCCCChhhh---h
Q 011765 264 WRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSK-----LPFFWVLKKRLGQADTE--PIELPDGFE---E 333 (478)
Q Consensus 264 ~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~-----~~~i~~~~~~~~~~~~~--~~~~p~~~~---~ 333 (478)
+.++..|+.. +++ .++++.|.... ...+..+++|+..+. ..+.++++.....++.. ....-..+. +
T Consensus 467 ~~~l~r~~~~-pdk-pvIL~VGRL~p--~KGi~~LIeAf~~L~~l~~~~nL~LIiG~gdd~d~l~~~~~~~l~~L~~li~ 542 (1050)
T TIGR02468 467 WSEIMRFFTN-PRK-PMILALARPDP--KKNITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSSGSSSVLTSVLKLID 542 (1050)
T ss_pred hHHHHhhccc-CCC-cEEEEEcCCcc--ccCHHHHHHHHHHhHhhccCCCEEEEEecCchhhhhhccchHHHHHHHHHHH
Confidence 4567777753 334 45566777663 333444555554321 24444454321100000 000001111 1
Q ss_pred hcC-CCcEEEeccCChhh---hhcCCC--ceeeeec---cCh-hhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEE
Q 011765 334 RTR-GRGVVYTSWAPQLA---ILAHDS--VGGFLTH---AGW-SSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVEL 403 (478)
Q Consensus 334 ~~~-~~n~~~~~~vpq~~---vL~~~~--~~~~ItH---gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~ 403 (478)
+.. .++|.+..++++.+ ++..++ .++||.- =|. .++.||+++|+|+|+....+ ....+....-|..
T Consensus 543 ~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~g~nGlL 618 (1050)
T TIGR02468 543 KYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRVLDNGLL 618 (1050)
T ss_pred HhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhccCCcEEE
Confidence 111 34677778888755 444442 1237753 343 69999999999999976532 3334444456888
Q ss_pred eeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHh
Q 011765 404 IPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLKN 464 (478)
Q Consensus 404 l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~ 464 (478)
++.. +.+.|+++|.++++ |++.++++.+-+......-+-...++..++.+..
T Consensus 619 VdP~------D~eaLA~AL~~LL~---Dpelr~~m~~~gr~~v~~FSWe~ia~~yl~~i~~ 670 (1050)
T TIGR02468 619 VDPH------DQQAIADALLKLVA---DKQLWAECRQNGLKNIHLFSWPEHCKTYLSRIAS 670 (1050)
T ss_pred ECCC------CHHHHHHHHHHHhh---CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 7764 78999999999999 7776666555444333333335555555555543
No 81
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.97 E-value=1.8e-06 Score=84.26 Aligned_cols=107 Identities=19% Similarity=0.280 Sum_probs=67.6
Q ss_pred CcEEEeccCCh-hhhhcCCCceeeeeccC----hhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCc
Q 011765 338 RGVVYTSWAPQ-LAILAHDSVGGFLTHAG----WSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGF 412 (478)
Q Consensus 338 ~n~~~~~~vpq-~~vL~~~~~~~~ItHgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~ 412 (478)
.++.+.....+ ..++..+++ +|.... .+++.||+++|+|+|+.. ...+...+.+ .|..++..
T Consensus 251 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~----~~~~~e~~~~--~g~~~~~~----- 317 (365)
T cd03807 251 DKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATD----VGDNAELVGD--TGFLVPPG----- 317 (365)
T ss_pred ceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcC----CCChHHHhhc--CCEEeCCC-----
Confidence 35655554443 557888888 775433 379999999999999854 4445555555 56666543
Q ss_pred ccHHHHHHHHHHHhcccchHHHHHH-HHHHHHHhcccCChHHHHHHHHHH
Q 011765 413 FTRNSVAESLRLVLVEEKGQIYRDK-AKEMKGLFGDKGRHDRYVDNFLNY 461 (478)
Q Consensus 413 ~~~~~l~~~i~~ll~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~i~~~ 461 (478)
+.+++.+++.++++ +++.++. .+...+.+.+.-+-.+.++.+++.
T Consensus 318 -~~~~l~~~i~~l~~---~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 363 (365)
T cd03807 318 -DPEALAEAIEALLA---DPALRQALGEAARERIEENFSIEAMVEAYEEL 363 (365)
T ss_pred -CHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 78999999999999 5443333 333333343444445555555543
No 82
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.96 E-value=1.2e-06 Score=88.61 Aligned_cols=111 Identities=16% Similarity=0.109 Sum_probs=70.6
Q ss_pred CcEEEeccCChhhh---hcCC--Cceeeeecc---C-hhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccC
Q 011765 338 RGVVYTSWAPQLAI---LAHD--SVGGFLTHA---G-WSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDE 408 (478)
Q Consensus 338 ~n~~~~~~vpq~~v---L~~~--~~~~~ItHg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~ 408 (478)
+++.+..++++.++ +..+ ++++||.-. | -.++.||+++|+|+|+... ......+.+...|..++..
T Consensus 317 ~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~----gg~~eiv~~~~~G~lv~~~- 391 (439)
T TIGR02472 317 GKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDD----GGPRDIIANCRNGLLVDVL- 391 (439)
T ss_pred ceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCC----CCcHHHhcCCCcEEEeCCC-
Confidence 46777777777554 5444 123377542 3 3599999999999999654 3455555555678877664
Q ss_pred CCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHH-hcccCChHHHHHHHHHH
Q 011765 409 GDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGL-FGDKGRHDRYVDNFLNY 461 (478)
Q Consensus 409 ~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~i~~~ 461 (478)
++++++++|.++++ |+..++++.+-+.. ..+.-+-+..++.+++.
T Consensus 392 -----d~~~la~~i~~ll~---~~~~~~~~~~~a~~~~~~~fsw~~~~~~~~~l 437 (439)
T TIGR02472 392 -----DLEAIASALEDALS---DSSQWQLWSRNGIEGVRRHYSWDAHVEKYLRI 437 (439)
T ss_pred -----CHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 78999999999999 66655544443332 22233334445555443
No 83
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.95 E-value=9.6e-07 Score=87.40 Aligned_cols=111 Identities=15% Similarity=0.172 Sum_probs=72.1
Q ss_pred cEEEeccCCh-hhhhcCCCceeee--ec--cChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcc
Q 011765 339 GVVYTSWAPQ-LAILAHDSVGGFL--TH--AGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFF 413 (478)
Q Consensus 339 n~~~~~~vpq-~~vL~~~~~~~~I--tH--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~ 413 (478)
++.+..+..+ .+++..+++ +| ++ |--+++.||+++|+|+|+... ..+...+++-..|..++..
T Consensus 256 ~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~----~g~~e~i~~~~~g~~~~~~------ 323 (374)
T TIGR03088 256 LVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAV----GGNPELVQHGVTGALVPPG------ 323 (374)
T ss_pred eEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCC----CCcHHHhcCCCceEEeCCC------
Confidence 4555554443 567888888 65 33 334799999999999999664 3355556555678887753
Q ss_pred cHHHHHHHHHHHhcccchHHHHHHHHHHHH-HhcccCChHHHHHHHHHHHHh
Q 011765 414 TRNSVAESLRLVLVEEKGQIYRDKAKEMKG-LFGDKGRHDRYVDNFLNYLKN 464 (478)
Q Consensus 414 ~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~i~~~~~~ 464 (478)
+.++++++|.++++ +++.++.+.+-+. .+.+.=+.+..++.+++.+++
T Consensus 324 d~~~la~~i~~l~~---~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~ 372 (374)
T TIGR03088 324 DAVALARALQPYVS---DPAARRAHGAAGRARAEQQFSINAMVAAYAGLYDQ 372 (374)
T ss_pred CHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 78999999999998 6655444433322 233334445566666665543
No 84
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.94 E-value=2.4e-07 Score=90.86 Aligned_cols=142 Identities=18% Similarity=0.115 Sum_probs=83.5
Q ss_pred CceEEEEeCcccC-CCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhh---c-CCCcEEEeccCCh-hh
Q 011765 277 GSVVYVAFGSEAK-PSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEER---T-RGRGVVYTSWAPQ-LA 350 (478)
Q Consensus 277 ~~~v~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~---~-~~~n~~~~~~vpq-~~ 350 (478)
++.+++..|+... ...+.+.+.+..+.+.+.++-+.+-+.. ...+.+.+. . ..+++.+..+..+ .+
T Consensus 191 ~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g--------~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 262 (358)
T cd03812 191 DKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDG--------ELEEEIKKKVKELGLEDKVIFLGVRNDVPE 262 (358)
T ss_pred CCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCC--------chHHHHHHHHHhcCCCCcEEEecccCCHHH
Confidence 4467777887664 2345555555555443334433333221 111111111 1 2346777776544 55
Q ss_pred hhcCCCceeeeec----cChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHh
Q 011765 351 ILAHDSVGGFLTH----AGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVL 426 (478)
Q Consensus 351 vL~~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll 426 (478)
++..+++ +|+- |-.+++.||+++|+|+|+....+ ....+.+ +.|..... . ++++++++|.+++
T Consensus 263 ~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~-~~~~~~~~-~-----~~~~~a~~i~~l~ 329 (358)
T cd03812 263 LLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD-LVKFLSLD-E-----SPEIWAEEILKLK 329 (358)
T ss_pred HHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc-CccEEeCC-C-----CHHHHHHHHHHHH
Confidence 7877887 5532 33579999999999999855443 3444544 55554433 2 6799999999999
Q ss_pred cccchHHHHHHHHHHH
Q 011765 427 VEEKGQIYRDKAKEMK 442 (478)
Q Consensus 427 ~~~~~~~~~~~a~~~~ 442 (478)
+ |++.++++..-+
T Consensus 330 ~---~~~~~~~~~~~~ 342 (358)
T cd03812 330 S---EDRRERSSESIK 342 (358)
T ss_pred h---Ccchhhhhhhhh
Confidence 9 666665554433
No 85
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.92 E-value=1.5e-06 Score=85.41 Aligned_cols=155 Identities=12% Similarity=0.163 Sum_probs=83.5
Q ss_pred EEEeCcccCCCHHHHHHHHHHHHhCC--CCEEEEEecCCCCCCCCCCCCChhhhhhc-CCCcEEEeccCChhh---hhcC
Q 011765 281 YVAFGSEAKPSQEELTEIALGLELSK--LPFFWVLKKRLGQADTEPIELPDGFEERT-RGRGVVYTSWAPQLA---ILAH 354 (478)
Q Consensus 281 ~vs~Gs~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~~~p~~~~~~~-~~~n~~~~~~vpq~~---vL~~ 354 (478)
++..|+... ...+..+++++++.. .+++++-.+. ....+-..+.++. ..+++.+..++++.+ .+..
T Consensus 196 i~~~G~~~~--~Kg~~~li~a~~~l~~~~~l~ivG~~~------~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ 267 (363)
T cd04955 196 YLLVGRIVP--ENNIDDLIEAFSKSNSGKKLVIVGNAD------HNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRY 267 (363)
T ss_pred EEEEecccc--cCCHHHHHHHHHhhccCceEEEEcCCC------CcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHh
Confidence 456787663 334455566665544 4444332221 1111111122111 246899999999865 4555
Q ss_pred CCceeeeecc----Ch-hhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhccc
Q 011765 355 DSVGGFLTHA----GW-SSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEE 429 (478)
Q Consensus 355 ~~~~~~ItHg----G~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~ 429 (478)
+++ ++.+. |. +++.||+++|+|+|+...... ...+.. .|...+.. +. +.+++.++++
T Consensus 268 ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~----~e~~~~--~g~~~~~~------~~--l~~~i~~l~~-- 329 (363)
T cd04955 268 AAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFN----REVLGD--KAIYFKVG------DD--LASLLEELEA-- 329 (363)
T ss_pred CCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCcc----ceeecC--CeeEecCc------hH--HHHHHHHHHh--
Confidence 666 55432 33 589999999999998765421 122222 24444332 22 9999999999
Q ss_pred chHHHHHHHHHHHHHhc-ccCChHHHHHHHHHHH
Q 011765 430 KGQIYRDKAKEMKGLFG-DKGRHDRYVDNFLNYL 462 (478)
Q Consensus 430 ~~~~~~~~a~~~~~~~~-~~~~~~~~~~~i~~~~ 462 (478)
+++.++++.+-+.... +.-+-+..++.+++.+
T Consensus 330 -~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y 362 (363)
T cd04955 330 -DPEEVSAMAKAARERIREKYTWEKIADQYEELY 362 (363)
T ss_pred -CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 6655554444333332 2233455556665543
No 86
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.92 E-value=1.6e-06 Score=83.03 Aligned_cols=318 Identities=16% Similarity=0.155 Sum_probs=179.6
Q ss_pred EEecCCCccCHHHHHHHHHHHHhC--CCeEEEEe-CCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChh
Q 011765 10 AMFPWLAFGHMIPWLELAKLIAQK--GHKIFFIS-TPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYD 86 (478)
Q Consensus 10 l~~~~~~~gH~~p~l~La~~L~~r--Gh~Vt~~~-~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~ 86 (478)
+.+=--+.|-++-...|.++|.++ ++.|++-+ ++...+.+.+.- .+.+...-+|. |.+
T Consensus 52 vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~---~~~v~h~YlP~--------------D~~-- 112 (419)
T COG1519 52 VWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALF---GDSVIHQYLPL--------------DLP-- 112 (419)
T ss_pred EEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHc---CCCeEEEecCc--------------Cch--
Confidence 333344679999999999999999 88888877 555555554432 12244444441 111
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcC--CcccHHHHHHHhCCCeEEEecchHHHHHhhccccccccccCCCCCC
Q 011765 87 EVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDF--AAYWLPARARELGIPSGFFSIFTAATLGYFGPSSVLINDSGDHLKT 164 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~--~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (478)
......++.++||++|.-- +.+..+.-+++.|+|.+.+..-
T Consensus 113 -------------~~v~rFl~~~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaR------------------------ 155 (419)
T COG1519 113 -------------IAVRRFLRKWRPKLLIIMETELWPNLINELKRRGIPLVLVNAR------------------------ 155 (419)
T ss_pred -------------HHHHHHHHhcCCCEEEEEeccccHHHHHHHHHcCCCEEEEeee------------------------
Confidence 1445566788999887543 3334556788999999987330
Q ss_pred CCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhh-hhccccCCcEEEEcCcCccChHHHHHHHhhcCCCee
Q 011765 165 PEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYR-FGQSLKGCDIVAVRSCMEFEPEWLKLLEQLHRKPVI 243 (478)
Q Consensus 165 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~~~~~~ 243 (478)
+..+..+ .+..... ....+.+.++++.++-. -.+....---+++.
T Consensus 156 ------------------LS~rS~~-----------~y~k~~~~~~~~~~~i~li~aQse~-----D~~Rf~~LGa~~v~ 201 (419)
T COG1519 156 ------------------LSDRSFA-----------RYAKLKFLARLLFKNIDLILAQSEE-----DAQRFRSLGAKPVV 201 (419)
T ss_pred ------------------echhhhH-----------HHHHHHHHHHHHHHhcceeeecCHH-----HHHHHHhcCCcceE
Confidence 0000001 1111111 11223455777776622 12222332234477
Q ss_pred eeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCC--CCEEEEEecCCCCCC
Q 011765 244 PVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSK--LPFFWVLKKRLGQAD 321 (478)
Q Consensus 244 ~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~ 321 (478)
.+|-+-...... ..+..+...|-..-+....+.|..+|... ..+.+-....++.+.. ...||+=+..
T Consensus 202 v~GNlKfd~~~~-----~~~~~~~~~~r~~l~~~r~v~iaaSTH~G-Eeei~l~~~~~l~~~~~~~llIlVPRHp----- 270 (419)
T COG1519 202 VTGNLKFDIEPP-----PQLAAELAALRRQLGGHRPVWVAASTHEG-EEEIILDAHQALKKQFPNLLLILVPRHP----- 270 (419)
T ss_pred EecceeecCCCC-----hhhHHHHHHHHHhcCCCCceEEEecCCCc-hHHHHHHHHHHHHhhCCCceEEEecCCh-----
Confidence 777665543321 12222233333333321255666666442 4455666666665433 4455653321
Q ss_pred CCCCCCCh--hhhhhc--------------CCCcEEEeccCChhh-hhcCCCceee-----eeccChhhHHHHHHhCCcE
Q 011765 322 TEPIELPD--GFEERT--------------RGRGVVYTSWAPQLA-ILAHDSVGGF-----LTHAGWSSVVEALQFGMPL 379 (478)
Q Consensus 322 ~~~~~~p~--~~~~~~--------------~~~n~~~~~~vpq~~-vL~~~~~~~~-----ItHgG~~s~~eal~~GvP~ 379 (478)
+.+++ +..++. ...++++.|-+--+- .++-+++ +| +-+||+| ..|++++|+|+
T Consensus 271 ---ERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adi-AFVGGSlv~~GGHN-~LEpa~~~~pv 345 (419)
T COG1519 271 ---ERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADI-AFVGGSLVPIGGHN-PLEPAAFGTPV 345 (419)
T ss_pred ---hhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccE-EEECCcccCCCCCC-hhhHHHcCCCE
Confidence 22211 000000 112455555444322 3333443 23 4699998 89999999999
Q ss_pred eccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Q 011765 380 IVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGL 444 (478)
Q Consensus 380 l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~ 444 (478)
|.=|+...|.+.++++.+.|.|+.++ +.+.+.+++..+++ |++.++++.+-...
T Consensus 346 i~Gp~~~Nf~ei~~~l~~~ga~~~v~--------~~~~l~~~v~~l~~---~~~~r~~~~~~~~~ 399 (419)
T COG1519 346 IFGPYTFNFSDIAERLLQAGAGLQVE--------DADLLAKAVELLLA---DEDKREAYGRAGLE 399 (419)
T ss_pred EeCCccccHHHHHHHHHhcCCeEEEC--------CHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Confidence 99999999999999999999999995 45778888888888 66666655443333
No 87
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.86 E-value=7.6e-07 Score=87.25 Aligned_cols=104 Identities=13% Similarity=0.166 Sum_probs=67.3
Q ss_pred CCcEEEeccCChh---hhhcCCCceeeeec----cChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCC
Q 011765 337 GRGVVYTSWAPQL---AILAHDSVGGFLTH----AGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEG 409 (478)
Q Consensus 337 ~~n~~~~~~vpq~---~vL~~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~ 409 (478)
.+++.+..++|+. +++..+++ +|.- |..+++.||+++|+|+|+..... ....+. ..|..+..
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~--~~~~~~~~--- 320 (365)
T cd03809 252 GDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVAG--DAALYFDP--- 320 (365)
T ss_pred CCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCCC----ccceec--CceeeeCC---
Confidence 4588888999875 46677777 5422 23468999999999999965422 111222 23444544
Q ss_pred CCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHH
Q 011765 410 DGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDN 457 (478)
Q Consensus 410 ~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 457 (478)
-+.+++.++|.++++ |++.+.++.+-+....+.-.-++.++.
T Consensus 321 ---~~~~~~~~~i~~l~~---~~~~~~~~~~~~~~~~~~~sw~~~~~~ 362 (365)
T cd03809 321 ---LDPEALAAAIERLLE---DPALREELRERGLARAKRFSWEKTARR 362 (365)
T ss_pred ---CCHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 278999999999999 777777766655444333333334333
No 88
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.85 E-value=6.8e-07 Score=89.23 Aligned_cols=110 Identities=17% Similarity=0.125 Sum_probs=73.2
Q ss_pred CCCcEEEeccCCh-hhhhcCCCceeee--ec--cCh-hhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCC
Q 011765 336 RGRGVVYTSWAPQ-LAILAHDSVGGFL--TH--AGW-SSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEG 409 (478)
Q Consensus 336 ~~~n~~~~~~vpq-~~vL~~~~~~~~I--tH--gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~ 409 (478)
..+++.+..++++ ..++..+++ +| ++ .|. +.+.||+++|+|+|+.+...+.. ....|.|..+. .
T Consensus 278 ~~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~~~g~lv~--~- 347 (397)
T TIGR03087 278 ALPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DALPGAELLVA--A- 347 (397)
T ss_pred cCCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----cccCCcceEeC--C-
Confidence 3467888889986 447788888 65 33 455 47999999999999987643321 12346676664 3
Q ss_pred CCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhc-ccCChHHHHHHHHHHH
Q 011765 410 DGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFG-DKGRHDRYVDNFLNYL 462 (478)
Q Consensus 410 ~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~i~~~~ 462 (478)
+.++++++|.++++ |++.++++.+-+.... +.-+-++.++.+++.+
T Consensus 348 ----~~~~la~ai~~ll~---~~~~~~~~~~~ar~~v~~~fsw~~~~~~~~~~l 394 (397)
T TIGR03087 348 ----DPADFAAAILALLA---NPAEREELGQAARRRVLQHYHWPRNLARLDALL 394 (397)
T ss_pred ----CHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 88999999999999 7766555544443332 3333455556665554
No 89
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.82 E-value=4.7e-06 Score=83.17 Aligned_cols=102 Identities=15% Similarity=0.152 Sum_probs=64.7
Q ss_pred EeccCChhhhhcCCCceeeeec----cChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHH
Q 011765 342 YTSWAPQLAILAHDSVGGFLTH----AGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNS 417 (478)
Q Consensus 342 ~~~~vpq~~vL~~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~ 417 (478)
+..+.+..+++..+++ ||.- +=-+++.||+++|+|+|+.-... + ..+.+-+-|... + +.++
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~~~ng~~~---~-----~~~~ 352 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQFPNCRTY---D-----DGKG 352 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeecCCceEec---C-----CHHH
Confidence 4455566678888887 8854 33479999999999999965442 2 333333344333 2 6789
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHhcc
Q 011765 418 VAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLKNHR 466 (478)
Q Consensus 418 l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 466 (478)
+.+++.++|.++. +..+.+ .+..-+-+.+++.+++.++..+
T Consensus 353 ~a~ai~~~l~~~~-~~~~~~-------a~~~~SWe~~~~~l~~~~~~~~ 393 (462)
T PLN02846 353 FVRATLKALAEEP-APLTDA-------QRHELSWEAATERFLRVADLDL 393 (462)
T ss_pred HHHHHHHHHccCc-hhHHHH-------HHHhCCHHHHHHHHHHHhccCC
Confidence 9999999998311 122111 1124445677888888776444
No 90
>PLN02275 transferase, transferring glycosyl groups
Probab=98.80 E-value=1e-05 Score=79.85 Aligned_cols=75 Identities=19% Similarity=0.326 Sum_probs=53.3
Q ss_pred CcEEEec-cCChhhh---hcCCCceeeee-c-----cC-hhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeec
Q 011765 338 RGVVYTS-WAPQLAI---LAHDSVGGFLT-H-----AG-WSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPR 406 (478)
Q Consensus 338 ~n~~~~~-~vpq~~v---L~~~~~~~~It-H-----gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~ 406 (478)
+|+.+.. |+|..++ ++.+++ +|. + -| -+++.||+++|+|+|+... ..+...+++-+.|...+
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv~~g~~G~lv~- 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELVKDGKNGLLFS- 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHccCCCCeEEEC-
Confidence 4666655 7887554 778888 663 1 12 3589999999999999643 34666676767898874
Q ss_pred cCCCCcccHHHHHHHHHHHh
Q 011765 407 DEGDGFFTRNSVAESLRLVL 426 (478)
Q Consensus 407 ~~~~~~~~~~~l~~~i~~ll 426 (478)
+.++++++|.++|
T Consensus 359 -------~~~~la~~i~~l~ 371 (371)
T PLN02275 359 -------SSSELADQLLELL 371 (371)
T ss_pred -------CHHHHHHHHHHhC
Confidence 4678888888775
No 91
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.75 E-value=3.7e-07 Score=89.53 Aligned_cols=141 Identities=16% Similarity=0.190 Sum_probs=82.9
Q ss_pred HhhhcccCCCCceEEEEeCccc--C-CCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcC-CCcEEE
Q 011765 267 IKEWLDEQEKGSVVYVAFGSEA--K-PSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTR-GRGVVY 342 (478)
Q Consensus 267 ~~~~l~~~~~~~~v~vs~Gs~~--~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~-~~n~~~ 342 (478)
+.+.+.-.++++.|+|++=... + ...+.+..+++++...+.++++++...+. ....+-+.+.+-.. .+++.+
T Consensus 191 ~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p----~~~~i~~~i~~~~~~~~~v~l 266 (365)
T TIGR03568 191 LEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADA----GSRIINEAIEEYVNEHPNFRL 266 (365)
T ss_pred HHHHhCCCCCCCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCC----CchHHHHHHHHHhcCCCCEEE
Confidence 4333332223468888875433 3 34578999999998877666666532211 01111111111111 357877
Q ss_pred eccCCh---hhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHH
Q 011765 343 TSWAPQ---LAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVA 419 (478)
Q Consensus 343 ~~~vpq---~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~ 419 (478)
.+-++. ..++.++++ +||-.+.+- .||.+.|+|+|.+-- -| ...+.|..+. ... .++++|.
T Consensus 267 ~~~l~~~~~l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~~--R~-----e~~~~g~nvl-~vg-----~~~~~I~ 330 (365)
T TIGR03568 267 FKSLGQERYLSLLKNADA--VIGNSSSGI-IEAPSFGVPTINIGT--RQ-----KGRLRADSVI-DVD-----PDKEEIV 330 (365)
T ss_pred ECCCChHHHHHHHHhCCE--EEEcChhHH-HhhhhcCCCEEeecC--Cc-----hhhhhcCeEE-EeC-----CCHHHHH
Confidence 765544 567788888 998875544 999999999997741 11 1112333322 223 4889999
Q ss_pred HHHHHHhc
Q 011765 420 ESLRLVLV 427 (478)
Q Consensus 420 ~~i~~ll~ 427 (478)
+++.++++
T Consensus 331 ~a~~~~~~ 338 (365)
T TIGR03568 331 KAIEKLLD 338 (365)
T ss_pred HHHHHHhC
Confidence 99999655
No 92
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.74 E-value=1.5e-05 Score=79.60 Aligned_cols=113 Identities=16% Similarity=0.172 Sum_probs=72.9
Q ss_pred CCcEEEeccCChhh---hhcCCCceeeee--c-------cCh-hhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEE
Q 011765 337 GRGVVYTSWAPQLA---ILAHDSVGGFLT--H-------AGW-SSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVEL 403 (478)
Q Consensus 337 ~~n~~~~~~vpq~~---vL~~~~~~~~It--H-------gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~ 403 (478)
.+++.+..|+|+.+ ++..+++ ||. + =|. ++++||+++|+|+|+.... .....+++-..|..
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v~~~~~G~l 351 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELVEADKSGWL 351 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----CchhhhcCCCceEE
Confidence 35788889999855 5667777 663 2 244 6799999999999996543 34445555567887
Q ss_pred eeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHH-HHhcccCChHHHHHHHHHHHH
Q 011765 404 IPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMK-GLFGDKGRHDRYVDNFLNYLK 463 (478)
Q Consensus 404 l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~i~~~~~ 463 (478)
.+.. +.++++++|.++++. |++.++++.+-+ +...+.=..+..++.+.+.++
T Consensus 352 v~~~------d~~~la~ai~~l~~~--d~~~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~ 404 (406)
T PRK15427 352 VPEN------DAQALAQRLAAFSQL--DTDELAPVVKRAREKVETDFNQQVINRELASLLQ 404 (406)
T ss_pred eCCC------CHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 7654 789999999999972 233333332222 223333334556666666554
No 93
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.73 E-value=1.2e-05 Score=81.53 Aligned_cols=207 Identities=16% Similarity=0.104 Sum_probs=110.1
Q ss_pred ccChHHHHHHHhhcCCCeeeec-cCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHH
Q 011765 225 EFEPEWLKLLEQLHRKPVIPVG-QLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLE 303 (478)
Q Consensus 225 ~le~~~~~~~~~~~~~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~ 303 (478)
-+|.+++. ..+-++.||| |+...... ..+.++.++-+.-.+++++|-+--||-.+.=...+..+.++.+
T Consensus 370 PFE~~~y~----~~gv~v~yVGHPL~d~i~~------~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~ 439 (608)
T PRK01021 370 PFEQNLFK----DSPLRTVYLGHPLVETISS------FSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFL 439 (608)
T ss_pred ccCHHHHH----hcCCCeEEECCcHHhhccc------CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 35555443 2455799999 99865331 2223344444444456678989899865322344444666665
Q ss_pred --hC--CCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCc---EEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhC
Q 011765 304 --LS--KLPFFWVLKKRLGQADTEPIELPDGFEERTRGRG---VVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFG 376 (478)
Q Consensus 304 --~~--~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n---~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~G 376 (478)
.. +.+|+...... ...+.+.+.....+ +.+..--...++++.|++ .+.-.|- .+.|+..+|
T Consensus 440 ~~~l~~~l~fvvp~a~~---------~~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-aTLEaAL~g 507 (608)
T PRK01021 440 ASSLASTHQLLVSSANP---------KYDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-IVLETALNQ 507 (608)
T ss_pred HHHhccCeEEEEecCch---------hhHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-HHHHHHHhC
Confidence 33 33444432211 11111222121111 122110012578888887 7777665 478999999
Q ss_pred CcEeccc-cccchhhHHHHHhhc--------------CeEEEee--ccCCCCcccHHHHHHHHHHHhcc-cchHHHHHHH
Q 011765 377 MPLIVLT-CYADQGLNAKLLEEK--------------QIVELIP--RDEGDGFFTRNSVAESLRLVLVE-EKGQIYRDKA 438 (478)
Q Consensus 377 vP~l~~P-~~~DQ~~na~~v~~~--------------g~G~~l~--~~~~~~~~~~~~l~~~i~~ll~~-~~~~~~~~~a 438 (478)
+|||++= ...=-+..|+++.+. .+-..+- ..+ +|++.|++++ ++|.+ +..++.++..
T Consensus 508 ~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~----~tpe~La~~l-~lL~d~~~r~~~~~~l 582 (608)
T PRK01021 508 TPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKD----FQPEEVAAAL-DILKTSQSKEKQKDAC 582 (608)
T ss_pred CCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCccc----CCHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 9998743 333445566776651 1111111 123 7999999997 77762 1224566677
Q ss_pred HHHHHHhcccCCh-HHHHHHH
Q 011765 439 KEMKGLFGDKGRH-DRYVDNF 458 (478)
Q Consensus 439 ~~~~~~~~~~~~~-~~~~~~i 458 (478)
+++++.+.++..+ +.++..+
T Consensus 583 ~~lr~~Lg~~~~~~~~~~~~~ 603 (608)
T PRK01021 583 RDLYQAMNESASTMKECLSLI 603 (608)
T ss_pred HHHHHHhcCCCCCHHHHHHHH
Confidence 7777777543333 3344433
No 94
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.72 E-value=1.1e-05 Score=79.73 Aligned_cols=110 Identities=18% Similarity=0.131 Sum_probs=69.9
Q ss_pred CcEEEeccC--Ch---hhhhcCCCceeeeecc---C-hhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccC
Q 011765 338 RGVVYTSWA--PQ---LAILAHDSVGGFLTHA---G-WSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDE 408 (478)
Q Consensus 338 ~n~~~~~~v--pq---~~vL~~~~~~~~ItHg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~ 408 (478)
+++.+..+. ++ .++++.+++ |+.-. | -.++.||+++|+|+|+.... .....+.....|...+
T Consensus 252 ~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i~~~~~g~~~~--- 322 (372)
T cd03792 252 PDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQIEDGETGFLVD--- 322 (372)
T ss_pred CCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----CchhhcccCCceEEeC---
Confidence 467776665 43 246677777 77432 2 35999999999999996543 3334455556676543
Q ss_pred CCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHh-cccCChHHHHHHHHHHHHh
Q 011765 409 GDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLF-GDKGRHDRYVDNFLNYLKN 464 (478)
Q Consensus 409 ~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~i~~~~~~ 464 (478)
+.+.++.+|.++++ +++.++++.+-+... .+.-.-+..++.+++.+++
T Consensus 323 -----~~~~~a~~i~~ll~---~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~ 371 (372)
T cd03792 323 -----TVEEAAVRILYLLR---DPELRRKMGANAREHVRENFLITRHLKDYLYLISK 371 (372)
T ss_pred -----CcHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 34567789999998 677666655544443 3333445666777766643
No 95
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.68 E-value=7.7e-05 Score=78.71 Aligned_cols=91 Identities=14% Similarity=0.149 Sum_probs=58.1
Q ss_pred CcEEEeccC-Ch---hhhhcC-CC-ceeeee---ccCh-hhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeecc
Q 011765 338 RGVVYTSWA-PQ---LAILAH-DS-VGGFLT---HAGW-SSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRD 407 (478)
Q Consensus 338 ~n~~~~~~v-pq---~~vL~~-~~-~~~~It---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~ 407 (478)
+++.+..+. +. .++..+ ++ .++||. .=|. .++.||+++|+|+|+... ...+..|.+-.-|..++..
T Consensus 619 g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~----GG~~EiV~dg~tGfLVdp~ 694 (784)
T TIGR02470 619 GQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRF----GGPLEIIQDGVSGFHIDPY 694 (784)
T ss_pred CeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHhcCCCcEEEeCCC
Confidence 456666654 32 234432 22 223773 2233 589999999999999544 4456666666678888774
Q ss_pred CCCCcccHHHHHHHHHHHh----cccchHHHHHHHHHH
Q 011765 408 EGDGFFTRNSVAESLRLVL----VEEKGQIYRDKAKEM 441 (478)
Q Consensus 408 ~~~~~~~~~~l~~~i~~ll----~~~~~~~~~~~a~~~ 441 (478)
+++.++++|.+++ . |++.++++.+-
T Consensus 695 ------D~eaLA~aL~~ll~kll~---dp~~~~~ms~~ 723 (784)
T TIGR02470 695 ------HGEEAAEKIVDFFEKCDE---DPSYWQKISQG 723 (784)
T ss_pred ------CHHHHHHHHHHHHHHhcC---CHHHHHHHHHH
Confidence 7788999998876 4 56665554443
No 96
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=98.67 E-value=7.9e-05 Score=73.86 Aligned_cols=113 Identities=14% Similarity=0.127 Sum_probs=76.5
Q ss_pred CcEEEeccCChhh---hhcCCCceeeeec----cCh-hhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCC
Q 011765 338 RGVVYTSWAPQLA---ILAHDSVGGFLTH----AGW-SSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEG 409 (478)
Q Consensus 338 ~n~~~~~~vpq~~---vL~~~~~~~~ItH----gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~ 409 (478)
.++.+..++|+.+ +++.+++ +|.- -|. .++.||+++|+|+|+.... .+...+++...|..+...
T Consensus 257 ~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv~~~~~G~~l~~~-- 328 (380)
T PRK15484 257 DRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFVLEGITGYHLAEP-- 328 (380)
T ss_pred CcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhcccCCceEEEeCC--
Confidence 4678888998644 5777888 6642 343 5789999999999996653 345556666678766443
Q ss_pred CCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHh
Q 011765 410 DGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLKN 464 (478)
Q Consensus 410 ~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~ 464 (478)
.+.++++++|.++++ |++.++..++-++...+.-.-+..++.+++.+++
T Consensus 329 ---~d~~~la~~I~~ll~---d~~~~~~~~~ar~~~~~~fsw~~~a~~~~~~l~~ 377 (380)
T PRK15484 329 ---MTSDSIISDINRTLA---DPELTQIAEQAKDFVFSKYSWEGVTQRFEEQIHN 377 (380)
T ss_pred ---CCHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 389999999999999 6665443333333333444456667777776654
No 97
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.66 E-value=3e-06 Score=83.06 Aligned_cols=137 Identities=12% Similarity=0.088 Sum_probs=88.4
Q ss_pred EEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChh---hhhcCCC
Q 011765 280 VYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQL---AILAHDS 356 (478)
Q Consensus 280 v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~---~vL~~~~ 356 (478)
.++..|+.. ....+..+++++++.+.+++++-.+.. .+.+.+ ...+|+.+..++|+. ++++.++
T Consensus 197 ~il~~G~~~--~~K~~~~li~a~~~~~~~l~ivG~g~~----------~~~l~~-~~~~~V~~~g~~~~~~~~~~~~~ad 263 (351)
T cd03804 197 YYLSVGRLV--PYKRIDLAIEAFNKLGKRLVVIGDGPE----------LDRLRA-KAGPNVTFLGRVSDEELRDLYARAR 263 (351)
T ss_pred EEEEEEcCc--cccChHHHHHHHHHCCCcEEEEECChh----------HHHHHh-hcCCCEEEecCCCHHHHHHHHHhCC
Confidence 455677766 334466677777777777665543221 111222 235689999999984 4677888
Q ss_pred ceeeeeccCh-hhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchH-HH
Q 011765 357 VGGFLTHAGW-SSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQ-IY 434 (478)
Q Consensus 357 ~~~~ItHgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~-~~ 434 (478)
+-++-+.-|. .++.||+++|+|+|+....+ ....+++.+.|..++.. +.++++++|.++++ |+ ..
T Consensus 264 ~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~~~G~~~~~~------~~~~la~~i~~l~~---~~~~~ 330 (351)
T cd03804 264 AFLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDGVTGILFEEQ------TVESLAAAVERFEK---NEDFD 330 (351)
T ss_pred EEEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCCCCEEEeCCC------CHHHHHHHHHHHHh---CcccC
Confidence 8333344444 46789999999999976433 34445555788888764 78889999999999 55 34
Q ss_pred HHHHHHHH
Q 011765 435 RDKAKEMK 442 (478)
Q Consensus 435 ~~~a~~~~ 442 (478)
++++++.+
T Consensus 331 ~~~~~~~~ 338 (351)
T cd03804 331 PQAIRAHA 338 (351)
T ss_pred HHHHHHHH
Confidence 44444433
No 98
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.66 E-value=6e-05 Score=79.32 Aligned_cols=113 Identities=18% Similarity=0.197 Sum_probs=73.1
Q ss_pred CCcEEEeccCCh-hhhhcCCCceeeee---ccCh-hhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCC
Q 011765 337 GRGVVYTSWAPQ-LAILAHDSVGGFLT---HAGW-SSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDG 411 (478)
Q Consensus 337 ~~n~~~~~~vpq-~~vL~~~~~~~~It---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~ 411 (478)
.+++.+..|.++ ..++..+++ ||. +.|+ +++.||+++|+|+|+.... .....+.+-..|..++..+
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~dg~~GlLv~~~d--- 643 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQEGVTGLTLPADT--- 643 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHccCCCCEEEeCCCC---
Confidence 357888888776 457777888 663 5564 7999999999999996643 3455565556798888765
Q ss_pred cccHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHhcccCChHHHHHHHHHHH
Q 011765 412 FFTRNSVAESLRLVLVE-EKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYL 462 (478)
Q Consensus 412 ~~~~~~l~~~i~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~ 462 (478)
.+.+++.+++.+++.. ..++.+++++++..+ +.-+.+..++.+++.+
T Consensus 644 -~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a~---~~FS~~~~~~~~~~lY 691 (694)
T PRK15179 644 -VTAPDVAEALARIHDMCAADPGIARKAADWAS---ARFSLNQMIASTVRCY 691 (694)
T ss_pred -CChHHHHHHHHHHHhChhccHHHHHHHHHHHH---HhCCHHHHHHHHHHHh
Confidence 5666777777666541 115667766655442 2223344555555544
No 99
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.65 E-value=6.4e-06 Score=78.12 Aligned_cols=212 Identities=17% Similarity=0.173 Sum_probs=119.5
Q ss_pred ccChHHHHHHHhhcCCCeeeec-cCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHH
Q 011765 225 EFEPEWLKLLEQLHRKPVIPVG-QLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLE 303 (478)
Q Consensus 225 ~le~~~~~~~~~~~~~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~ 303 (478)
-+|++.++. ++-+.+||| |+....+. ..+..+.++-+.-..+++++.+-.||-.+.-...+.-+.++..
T Consensus 145 PFE~~~y~k----~g~~~~yVGHpl~d~i~~------~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~ 214 (381)
T COG0763 145 PFEPAFYDK----FGLPCTYVGHPLADEIPL------LPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQ 214 (381)
T ss_pred CCCHHHHHh----cCCCeEEeCChhhhhccc------cccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHH
Confidence 355554433 333489999 88866542 2334445555655556779999999866411222333444443
Q ss_pred h-----CCCCEEEEEecCCCCCCCCCCCCChhhhhhcCC-CcEEEeccCCh--hhhhcCCCceeeeeccChhhHHHHHHh
Q 011765 304 L-----SKLPFFWVLKKRLGQADTEPIELPDGFEERTRG-RGVVYTSWAPQ--LAILAHDSVGGFLTHAGWSSVVEALQF 375 (478)
Q Consensus 304 ~-----~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~-~n~~~~~~vpq--~~vL~~~~~~~~ItHgG~~s~~eal~~ 375 (478)
+ .+.+|+.-+.... ...+-....+.... -+.++ .++ .+++..|++ .+.-+|-. +.|+..+
T Consensus 215 ~l~~~~~~~~~vlp~~~~~------~~~~~~~~~~~~~~~~~~~~---~~~~~~~a~~~aD~--al~aSGT~-tLE~aL~ 282 (381)
T COG0763 215 ELKARYPDLKFVLPLVNAK------YRRIIEEALKWEVAGLSLIL---IDGEKRKAFAAADA--ALAASGTA-TLEAALA 282 (381)
T ss_pred HHHhhCCCceEEEecCcHH------HHHHHHHHhhccccCceEEe---cCchHHHHHHHhhH--HHHhccHH-HHHHHHh
Confidence 2 2345554433210 00000011100000 11222 222 336666776 66666654 6799999
Q ss_pred CCcEeccc-cccchhhHHHHHhhcCeEE------------EeeccCCCCcccHHHHHHHHHHHhccc-chHHHHHHHHHH
Q 011765 376 GMPLIVLT-CYADQGLNAKLLEEKQIVE------------LIPRDEGDGFFTRNSVAESLRLVLVEE-KGQIYRDKAKEM 441 (478)
Q Consensus 376 GvP~l~~P-~~~DQ~~na~~v~~~g~G~------------~l~~~~~~~~~~~~~l~~~i~~ll~~~-~~~~~~~~a~~~ 441 (478)
|+|||+.= ...=-+..|++.....-.- .+-..+ ++++.|.+++..++.++ +-+.+++....+
T Consensus 283 g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~----~~pe~la~~l~~ll~~~~~~~~~~~~~~~l 358 (381)
T COG0763 283 GTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQED----CTPENLARALEELLLNGDRREALKEKFREL 358 (381)
T ss_pred CCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhh----cCHHHHHHHHHHHhcChHhHHHHHHHHHHH
Confidence 99998753 2222344455544432211 111122 78999999999999943 114788888889
Q ss_pred HHHhcccCChHHHHHHHHHHH
Q 011765 442 KGLFGDKGRHDRYVDNFLNYL 462 (478)
Q Consensus 442 ~~~~~~~~~~~~~~~~i~~~~ 462 (478)
++.++..+.++.+++.+.+.+
T Consensus 359 ~~~l~~~~~~e~aA~~vl~~~ 379 (381)
T COG0763 359 HQYLREDPASEIAAQAVLELL 379 (381)
T ss_pred HHHHcCCcHHHHHHHHHHHHh
Confidence 999888778889999888865
No 100
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.63 E-value=2.5e-05 Score=79.60 Aligned_cols=170 Identities=12% Similarity=0.076 Sum_probs=86.4
Q ss_pred CceEEEEeCcccC-CCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhc--CCCcEE-EeccCCh--hh
Q 011765 277 GSVVYVAFGSEAK-PSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERT--RGRGVV-YTSWAPQ--LA 350 (478)
Q Consensus 277 ~~~v~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~--~~~n~~-~~~~vpq--~~ 350 (478)
+.++++..|.... ...+.+.+.+..+.+.+.+++++-.+. ...-+.+.+.. ...++. ...|-.. ..
T Consensus 281 ~~~~i~~vGRl~~~KG~~~li~a~~~l~~~~~~lvivG~g~--------~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~ 352 (466)
T PRK00654 281 DAPLFAMVSRLTEQKGLDLVLEALPELLEQGGQLVLLGTGD--------PELEEAFRALAARYPGKVGVQIGYDEALAHR 352 (466)
T ss_pred CCcEEEEeeccccccChHHHHHHHHHHHhcCCEEEEEecCc--------HHHHHHHHHHHHHCCCcEEEEEeCCHHHHHH
Confidence 3466777787663 223333333333333356666553221 11111121111 123443 3345322 24
Q ss_pred hhcCCCceeeee---ccCh-hhHHHHHHhCCcEecccccc--chhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHH
Q 011765 351 ILAHDSVGGFLT---HAGW-SSVVEALQFGMPLIVLTCYA--DQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRL 424 (478)
Q Consensus 351 vL~~~~~~~~It---HgG~-~s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ 424 (478)
+++.+++ +|. +-|. .+.+||+++|+|+|+....+ |.-.+...-.+.+.|..++.. ++++|.++|.+
T Consensus 353 ~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~------d~~~la~~i~~ 424 (466)
T PRK00654 353 IYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDDF------NAEDLLRALRR 424 (466)
T ss_pred HHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEEeCCC------CHHHHHHHHHH
Confidence 6777887 663 3344 48999999999999865432 211110000223678887764 78999999999
Q ss_pred HhcccchHHHHHHHHHHHHHh-cccCChHHHHHHHHHHHHhc
Q 011765 425 VLVEEKGQIYRDKAKEMKGLF-GDKGRHDRYVDNFLNYLKNH 465 (478)
Q Consensus 425 ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~i~~~~~~~ 465 (478)
+++...++..++ ++++.. .+.-+-++.++..++.+++.
T Consensus 425 ~l~~~~~~~~~~---~~~~~~~~~~fsw~~~a~~~~~lY~~~ 463 (466)
T PRK00654 425 ALELYRQPPLWR---ALQRQAMAQDFSWDKSAEEYLELYRRL 463 (466)
T ss_pred HHHHhcCHHHHH---HHHHHHhccCCChHHHHHHHHHHHHHH
Confidence 886111222222 232322 23334466777777766543
No 101
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.59 E-value=3.8e-07 Score=73.66 Aligned_cols=121 Identities=20% Similarity=0.230 Sum_probs=82.4
Q ss_pred ceEEEEeCcccCCC---HHHHHHHHHHHHhCCCC-EEEEEecCCCCCCCCCCCCChhhh--hhcCCCcEEEeccCCh-hh
Q 011765 278 SVVYVAFGSEAKPS---QEELTEIALGLELSKLP-FFWVLKKRLGQADTEPIELPDGFE--ERTRGRGVVYTSWAPQ-LA 350 (478)
Q Consensus 278 ~~v~vs~Gs~~~~~---~~~~~~~~~al~~~~~~-~i~~~~~~~~~~~~~~~~~p~~~~--~~~~~~n~~~~~~vpq-~~ 350 (478)
..+||+-||....+ .-.-...++.|.+.|.. .++.++.+.. -.++... .+...-.+...+|.|- .+
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~-------~~~d~~~~~~k~~gl~id~y~f~psl~e 76 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQP-------FFGDPIDLIRKNGGLTIDGYDFSPSLTE 76 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCcc-------CCCCHHHhhcccCCeEEEEEecCccHHH
Confidence 38999999987311 12233467777888864 5666665411 1122111 1112223556778887 55
Q ss_pred hhcCCCceeeeeccChhhHHHHHHhCCcEecccc----ccchhhHHHHHhhcCeEEEeecc
Q 011765 351 ILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTC----YADQGLNAKLLEEKQIVELIPRD 407 (478)
Q Consensus 351 vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~----~~DQ~~na~~v~~~g~G~~l~~~ 407 (478)
..+.+++ +|+|+|.||++|.|..|+|.|+++- ...|-.-|..+.+.|-=..=...
T Consensus 77 ~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL~~C~ps 135 (170)
T KOG3349|consen 77 DIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEEGYLYYCTPS 135 (170)
T ss_pred HHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhcCcEEEeecc
Confidence 6666777 9999999999999999999999993 57999999999998865554443
No 102
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.53 E-value=9.1e-05 Score=75.88 Aligned_cols=167 Identities=13% Similarity=0.038 Sum_probs=85.3
Q ss_pred CceEEEEeCcccC-CCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcC--CCcEEEeccCChh---h
Q 011765 277 GSVVYVAFGSEAK-PSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTR--GRGVVYTSWAPQL---A 350 (478)
Q Consensus 277 ~~~v~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~--~~n~~~~~~vpq~---~ 350 (478)
+..+++..|.... ...+.+.+.++.+.+.+.+++++-.+. ..+-+.+.+..+ .+++.+....++. .
T Consensus 295 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~--------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 366 (476)
T cd03791 295 DAPLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGD--------PEYEEALRELAARYPGRVAVLIGYDEALAHL 366 (476)
T ss_pred CCCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCC--------HHHHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Confidence 3466777787764 223444444444444455555543321 111111111111 3466543333332 3
Q ss_pred hhcCCCceeeeec---cCh-hhHHHHHHhCCcEecccccc--chhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHH
Q 011765 351 ILAHDSVGGFLTH---AGW-SSVVEALQFGMPLIVLTCYA--DQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRL 424 (478)
Q Consensus 351 vL~~~~~~~~ItH---gG~-~s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ 424 (478)
+++.+++ ++.- -|. .+.+||+++|+|+|+....+ |.-.+...-.+.|.|..++.. +.+++.+++.+
T Consensus 367 ~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~------~~~~l~~~i~~ 438 (476)
T cd03791 367 IYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGY------NADALLAALRR 438 (476)
T ss_pred HHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCC------CHHHHHHHHHH
Confidence 5677777 6632 122 47899999999999866532 211111111133578888764 78999999999
Q ss_pred HhcccchHHHHHHHHHHHHHhcccCCh-HHHHHHHHHHH
Q 011765 425 VLVEEKGQIYRDKAKEMKGLFGDKGRH-DRYVDNFLNYL 462 (478)
Q Consensus 425 ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~i~~~~ 462 (478)
+++ ...-++...++++.......+ ++.++..++.+
T Consensus 439 ~l~---~~~~~~~~~~~~~~~~~~~fsw~~~a~~~~~~y 474 (476)
T cd03791 439 ALA---LYRDPEAWRKLQRNAMAQDFSWDRSAKEYLELY 474 (476)
T ss_pred HHH---HHcCHHHHHHHHHHHhccCCChHHHHHHHHHHH
Confidence 886 211123333344433333222 45555555544
No 103
>PLN00142 sucrose synthase
Probab=98.47 E-value=0.00017 Score=76.31 Aligned_cols=70 Identities=19% Similarity=0.210 Sum_probs=48.3
Q ss_pred eee---ccCh-hhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHH----hcccch
Q 011765 360 FLT---HAGW-SSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLV----LVEEKG 431 (478)
Q Consensus 360 ~It---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~l----l~~~~~ 431 (478)
||. .=|. .++.||+++|+|+|+... ......|++-.-|..++.. ++++++++|.++ ++ |
T Consensus 670 fVlPS~~EgFGLvvLEAMA~GlPVVATdv----GG~~EIV~dG~tG~LV~P~------D~eaLA~aI~~lLekLl~---D 736 (815)
T PLN00142 670 FVQPALYEAFGLTVVEAMTCGLPTFATCQ----GGPAEIIVDGVSGFHIDPY------HGDEAANKIADFFEKCKE---D 736 (815)
T ss_pred EEeCCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHhcCCCcEEEeCCC------CHHHHHHHHHHHHHHhcC---C
Confidence 764 2444 489999999999999544 4455556555678888764 677888887664 45 6
Q ss_pred HHHHHHHHHHH
Q 011765 432 QIYRDKAKEMK 442 (478)
Q Consensus 432 ~~~~~~a~~~~ 442 (478)
++.++++.+-+
T Consensus 737 p~lr~~mg~~A 747 (815)
T PLN00142 737 PSYWNKISDAG 747 (815)
T ss_pred HHHHHHHHHHH
Confidence 66666655543
No 104
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.46 E-value=1.3e-06 Score=84.91 Aligned_cols=158 Identities=15% Similarity=0.205 Sum_probs=88.0
Q ss_pred CCCceEEEEeCcccCCC-H---HHHHHHHHHHHhC-CCCEEEEEecCCCCCCCCCCCCChhhhhhcCC-CcEEEeccCCh
Q 011765 275 EKGSVVYVAFGSEAKPS-Q---EELTEIALGLELS-KLPFFWVLKKRLGQADTEPIELPDGFEERTRG-RGVVYTSWAPQ 348 (478)
Q Consensus 275 ~~~~~v~vs~Gs~~~~~-~---~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~-~n~~~~~~vpq 348 (478)
.+++.+++++=...+.. + ..+..++++|.+. +.++||.+...+. ....+.++... +|+++..-+++
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~--------~~~~i~~~l~~~~~v~~~~~l~~ 249 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPR--------GSDIIIEKLKKYDNVRLIEPLGY 249 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HH--------HHHHHHHHHTT-TTEEEE----H
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCch--------HHHHHHHHhcccCCEEEECCCCH
Confidence 45679999986555544 3 4455566666655 6778888763211 01112222221 38888776665
Q ss_pred ---hhhhcCCCceeeeeccChhhHH-HHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHH
Q 011765 349 ---LAILAHDSVGGFLTHAGWSSVV-EALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRL 424 (478)
Q Consensus 349 ---~~vL~~~~~~~~ItHgG~~s~~-eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ 424 (478)
..+|.++++ +||..| ++. ||.+.|+|+|.+=...+.+ .....|..+.+ . .+.++|.+++++
T Consensus 250 ~~~l~ll~~a~~--vvgdSs--GI~eEa~~lg~P~v~iR~~geRq----e~r~~~~nvlv--~-----~~~~~I~~ai~~ 314 (346)
T PF02350_consen 250 EEYLSLLKNADL--VVGDSS--GIQEEAPSLGKPVVNIRDSGERQ----EGRERGSNVLV--G-----TDPEAIIQAIEK 314 (346)
T ss_dssp HHHHHHHHHESE--EEESSH--HHHHHGGGGT--EEECSSS-S-H----HHHHTTSEEEE--T-----SSHHHHHHHHHH
T ss_pred HHHHHHHhcceE--EEEcCc--cHHHHHHHhCCeEEEecCCCCCH----HHHhhcceEEe--C-----CCHHHHHHHHHH
Confidence 557788888 999998 666 9999999999983222222 12233555553 2 489999999999
Q ss_pred HhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHH
Q 011765 425 VLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYL 462 (478)
Q Consensus 425 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~ 462 (478)
+++ +..+..+++....-+.++. +.+.|++.|
T Consensus 315 ~l~---~~~~~~~~~~~~npYgdG~----as~rI~~~L 345 (346)
T PF02350_consen 315 ALS---DKDFYRKLKNRPNPYGDGN----ASERIVEIL 345 (346)
T ss_dssp HHH----HHHHHHHHCS--TT-SS-----HHHHHHHHH
T ss_pred HHh---ChHHHHhhccCCCCCCCCc----HHHHHHHhh
Confidence 999 6555555555444555555 445555444
No 105
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.46 E-value=7.2e-05 Score=72.66 Aligned_cols=177 Identities=19% Similarity=0.144 Sum_probs=93.8
Q ss_pred cCCCeeeec-cCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHH---hC--CCCEEE
Q 011765 238 HRKPVIPVG-QLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLE---LS--KLPFFW 311 (478)
Q Consensus 238 ~~~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~---~~--~~~~i~ 311 (478)
.+-++.||| |+...... .....+..+.+ -.+++++|.+--||-...=...+..++++.+ +. +.+|++
T Consensus 151 ~g~~~~~VGHPl~d~~~~------~~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvv 223 (373)
T PF02684_consen 151 HGVPVTYVGHPLLDEVKP------EPDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVV 223 (373)
T ss_pred cCCCeEEECCcchhhhcc------CCCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 345699999 98865443 22233333343 3345678999999855312233344555543 22 344444
Q ss_pred EEecCCCCCCCCCCCCChhhhhhc--CCCcEEEecc-CChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccc-cccc
Q 011765 312 VLKKRLGQADTEPIELPDGFEERT--RGRGVVYTSW-APQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLT-CYAD 387 (478)
Q Consensus 312 ~~~~~~~~~~~~~~~~p~~~~~~~--~~~n~~~~~~-vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P-~~~D 387 (478)
..... .....+.+.. ...++.+.-. -.-.+++..+++ .+.-.| ..+.|+..+|+|||++= ...=
T Consensus 224 p~a~~---------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SG-TaTLE~Al~g~P~Vv~Yk~~~l 291 (373)
T PF02684_consen 224 PVAPE---------VHEELIEEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASG-TATLEAALLGVPMVVAYKVSPL 291 (373)
T ss_pred ecCCH---------HHHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCC-HHHHHHHHhCCCEEEEEcCcHH
Confidence 43221 1111011110 1112222111 134567877777 555444 45789999999997753 4445
Q ss_pred hhhHHHHHhhcCeEEEee-c-cCC-------CCcccHHHHHHHHHHHhcccchHHHHHH
Q 011765 388 QGLNAKLLEEKQIVELIP-R-DEG-------DGFFTRNSVAESLRLVLVEEKGQIYRDK 437 (478)
Q Consensus 388 Q~~na~~v~~~g~G~~l~-~-~~~-------~~~~~~~~l~~~i~~ll~~~~~~~~~~~ 437 (478)
.+..|+++.+..- +.|. . ..+ ++-+|++.|.+++.++|+ |++.++.
T Consensus 292 t~~iak~lvk~~~-isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~---~~~~~~~ 346 (373)
T PF02684_consen 292 TYFIAKRLVKVKY-ISLPNIIAGREVVPELIQEDATPENIAAELLELLE---NPEKRKK 346 (373)
T ss_pred HHHHHHHhhcCCE-eechhhhcCCCcchhhhcccCCHHHHHHHHHHHhc---CHHHHHH
Confidence 5667777765432 1111 0 000 112799999999999999 5544433
No 106
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.41 E-value=0.00083 Score=68.73 Aligned_cols=164 Identities=11% Similarity=0.011 Sum_probs=87.0
Q ss_pred ceEEEEeCcccC-CCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhc--CCCcEEEeccCChh---hh
Q 011765 278 SVVYVAFGSEAK-PSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERT--RGRGVVYTSWAPQL---AI 351 (478)
Q Consensus 278 ~~v~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~--~~~n~~~~~~vpq~---~v 351 (478)
..+++..|.... ...+.+.+.+..+.+.+.+++++-.+. ....+.+.+.. ...++.+....+.. .+
T Consensus 291 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~--------~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~ 362 (473)
T TIGR02095 291 VPLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGTGD--------PELEEALRELAERYPGNVRVIIGYDEALAHLI 362 (473)
T ss_pred CCEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECCCC--------HHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHH
Confidence 466777787764 223444444444444455555543221 01111111111 12356554444553 46
Q ss_pred hcCCCceeeee---ccCh-hhHHHHHHhCCcEeccccccchhhHHHHHhhc------CeEEEeeccCCCCcccHHHHHHH
Q 011765 352 LAHDSVGGFLT---HAGW-SSVVEALQFGMPLIVLTCYADQGLNAKLLEEK------QIVELIPRDEGDGFFTRNSVAES 421 (478)
Q Consensus 352 L~~~~~~~~It---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~------g~G~~l~~~~~~~~~~~~~l~~~ 421 (478)
++.+++ +|. +-|. .+.+||+++|+|+|+....+ ....+.+. +.|..++.. +++++.++
T Consensus 363 ~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v~~~~~~~~~~~G~l~~~~------d~~~la~~ 430 (473)
T TIGR02095 363 YAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTVVDGDPEAESGTGFLFEEY------DPGALLAA 430 (473)
T ss_pred HHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceEecCCCCCCCCceEEeCCC------CHHHHHHH
Confidence 777777 663 2244 37899999999999865532 22223332 678887664 78899999
Q ss_pred HHHHhcccc-hHHHHHHHHHHHHHhc-ccCChHHHHHHHHHHHHh
Q 011765 422 LRLVLVEEK-GQIYRDKAKEMKGLFG-DKGRHDRYVDNFLNYLKN 464 (478)
Q Consensus 422 i~~ll~~~~-~~~~~~~a~~~~~~~~-~~~~~~~~~~~i~~~~~~ 464 (478)
|.+++..-. +++.++ ++++... +.-+-++.++..++.+++
T Consensus 431 i~~~l~~~~~~~~~~~---~~~~~~~~~~fsw~~~a~~~~~~Y~~ 472 (473)
T TIGR02095 431 LSRALRLYRQDPSLWE---ALQKNAMSQDFSWDKSAKQYVELYRS 472 (473)
T ss_pred HHHHHHHHhcCHHHHH---HHHHHHhccCCCcHHHHHHHHHHHHh
Confidence 999886100 233333 3333222 233335666766666543
No 107
>PLN02949 transferase, transferring glycosyl groups
Probab=98.40 E-value=0.00035 Score=70.72 Aligned_cols=112 Identities=16% Similarity=0.128 Sum_probs=63.0
Q ss_pred CCcEEEeccCChhh---hhcCCCceeeee---ccCh-hhHHHHHHhCCcEeccccccchhhHHHHHhhc--C-eEEEeec
Q 011765 337 GRGVVYTSWAPQLA---ILAHDSVGGFLT---HAGW-SSVVEALQFGMPLIVLTCYADQGLNAKLLEEK--Q-IVELIPR 406 (478)
Q Consensus 337 ~~n~~~~~~vpq~~---vL~~~~~~~~It---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~--g-~G~~l~~ 406 (478)
.+++.+..++|+.+ +|..+++ +|+ +=|. .++.||+++|+|+|+....+- ....+.+. | .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp---~~eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGP---KMDIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCC---cceeeecCCCCcccccC--
Confidence 45788888998754 6677777 662 2233 379999999999999765320 00001110 1 23221
Q ss_pred cCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHH
Q 011765 407 DEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLK 463 (478)
Q Consensus 407 ~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~ 463 (478)
. +.++++++|.+++++ +++.++++.+-+....+.=+.++..+.+.+.++
T Consensus 407 -~-----~~~~la~ai~~ll~~--~~~~r~~m~~~ar~~~~~FS~e~~~~~~~~~i~ 455 (463)
T PLN02949 407 -T-----TVEEYADAILEVLRM--RETERLEIAAAARKRANRFSEQRFNEDFKDAIR 455 (463)
T ss_pred -C-----CHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 2 788999999999973 233333332222222222333445555555554
No 108
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.37 E-value=7.8e-05 Score=71.07 Aligned_cols=355 Identities=17% Similarity=0.154 Sum_probs=189.1
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCC-CeEEEEeCCCcc--ccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccC
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKG-HKIFFISTPRNI--DRLPRLPQNLASMIQFVKISLPHVDNLRENAEATI 81 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rG-h~Vt~~~~~~~~--~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~ 81 (478)
+++||+++ ++.+=-+.-+..|.+++.+.+ .+..++.+...+ +.... . ++.-.++.| + ......
T Consensus 2 ~~~Kv~~I-~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~-~------le~~~i~~p--d----y~L~i~ 67 (383)
T COG0381 2 KMLKVLTI-FGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQ-V------LELFGIRKP--D----YDLNIM 67 (383)
T ss_pred CceEEEEE-EecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHH-H------HHHhCCCCC--C----cchhcc
Confidence 35566554 677788889999999999986 777777787776 32221 1 121222110 1 000000
Q ss_pred CCChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEE--cCCcc-cHHHHHHHhCCCeEEEecchHHHHHhhcccccccccc
Q 011765 82 DLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLF--DFAAY-WLPARARELGIPSGFFSIFTAATLGYFGPSSVLINDS 158 (478)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~--D~~~~-~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (478)
... ..+..........+.+++++.+||+|++ |.... ++.++|.+++||+.-+-.+.-+
T Consensus 68 ~~~----~tl~~~t~~~i~~~~~vl~~~kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlRt--------------- 128 (383)
T COG0381 68 KPG----QTLGEITGNIIEGLSKVLEEEKPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLRT--------------- 128 (383)
T ss_pred ccC----CCHHHHHHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHHHhCCceEEEeccccc---------------
Confidence 001 1233444445568888899999999985 44433 5588999999999876331110
Q ss_pred CCCCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHH-HHHHHhh
Q 011765 159 GDHLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEW-LKLLEQL 237 (478)
Q Consensus 159 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~-~~~~~~~ 237 (478)
-..+.| ... .+.+ . -.-+++.+..+ -.. -..+++.
T Consensus 129 ------------~~~~~P--EE~---NR~l--------------------~--~~~S~~hfapt-----e~ar~nLl~EG 164 (383)
T COG0381 129 ------------GDLYFP--EEI---NRRL--------------------T--SHLSDLHFAPT-----EIARKNLLREG 164 (383)
T ss_pred ------------CCCCCc--HHH---HHHH--------------------H--HHhhhhhcCCh-----HHHHHHHHHcC
Confidence 000111 100 0000 0 00111112211 000 0112222
Q ss_pred cCC-Ceeeec-cCCCCCCCCCCCCCCCChhhHhhh-cccCCCCceEEEEeCcccCCCHHHHHHHHHHH----HhCCCCEE
Q 011765 238 HRK-PVIPVG-QLPTTTGDGDSDAETDTWRSIKEW-LDEQEKGSVVYVAFGSEAKPSQEELTEIALGL----ELSKLPFF 310 (478)
Q Consensus 238 ~~~-~~~~vG-p~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al----~~~~~~~i 310 (478)
.++ ++..+| +...-......+ .....+.... ++. +++..+++++=...+.. +.+..+++++ ++. ..+.
T Consensus 165 ~~~~~IfvtGnt~iDal~~~~~~--~~~~~~~~~~~~~~-~~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~-~~~~ 239 (383)
T COG0381 165 VPEKRIFVTGNTVIDALLNTRDR--VLEDSKILAKGLDD-KDKKYILVTAHRRENVG-EPLEEICEALREIAEEY-PDVI 239 (383)
T ss_pred CCccceEEeCChHHHHHHHHHhh--hccchhhHHhhhcc-ccCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhC-CCce
Confidence 333 244455 222110000000 0001111111 222 23448888875555444 5555666655 333 2334
Q ss_pred EEEecCCCCCCCCCCCCChhhhhhcC-CCcEEEec---cCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEecccccc
Q 011765 311 WVLKKRLGQADTEPIELPDGFEERTR-GRGVVYTS---WAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYA 386 (478)
Q Consensus 311 ~~~~~~~~~~~~~~~~~p~~~~~~~~-~~n~~~~~---~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~ 386 (478)
.++.... ...+-+-...+.+ .+++.+.+ |.+...++.++.+ ++|-.|. -.-||-..|+|++++-...
T Consensus 240 viyp~H~------~~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~--iltDSGg-iqEEAp~lg~Pvl~lR~~T 310 (383)
T COG0381 240 VIYPVHP------RPRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFL--ILTDSGG-IQEEAPSLGKPVLVLRDTT 310 (383)
T ss_pred EEEeCCC------ChhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceE--EEecCCc-hhhhHHhcCCcEEeeccCC
Confidence 4443321 1111111112222 23566544 5566778888888 9998764 3679999999999999999
Q ss_pred chhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHh
Q 011765 387 DQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLKN 464 (478)
Q Consensus 387 DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~ 464 (478)
++|. ..+.|.-+.+. .+.+.|.+++..+++ +++..++++....-..++..+.+.++.+..+...
T Consensus 311 ERPE----~v~agt~~lvg-------~~~~~i~~~~~~ll~---~~~~~~~m~~~~npYgdg~as~rIv~~l~~~~~~ 374 (383)
T COG0381 311 ERPE----GVEAGTNILVG-------TDEENILDAATELLE---DEEFYERMSNAKNPYGDGNASERIVEILLNYFDS 374 (383)
T ss_pred CCcc----ceecCceEEeC-------ccHHHHHHHHHHHhh---ChHHHHHHhcccCCCcCcchHHHHHHHHHHHhhh
Confidence 9998 23344444443 377999999999999 8888888888777777776666666666665543
No 109
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.31 E-value=0.0019 Score=63.86 Aligned_cols=109 Identities=17% Similarity=0.131 Sum_probs=65.9
Q ss_pred CCcEEEeccCChhh---hhcCCCceeee------eccCh-hhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeec
Q 011765 337 GRGVVYTSWAPQLA---ILAHDSVGGFL------THAGW-SSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPR 406 (478)
Q Consensus 337 ~~n~~~~~~vpq~~---vL~~~~~~~~I------tHgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~ 406 (478)
.+|+.+..++|..+ .+.++++.++- +.++. +.+.|++++|+|+|+.+.. ..++..+ |..+..
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~-------~~~~~~~-~~~~~~ 324 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPLP-------EVRRYED-EVVLIA 324 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCcH-------HHHhhcC-cEEEeC
Confidence 35899999998755 56778884332 22333 5699999999999987631 2222223 333322
Q ss_pred cCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHh
Q 011765 407 DEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLKN 464 (478)
Q Consensus 407 ~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~ 464 (478)
. +.+++.++|.+++.++..+..++ ++ + +.+..+-+..++.+++.+..
T Consensus 325 -~-----d~~~~~~ai~~~l~~~~~~~~~~-~~---~-~~~~~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 325 -D-----DPEEFVAAIEKALLEDGPARERR-RL---R-LAAQNSWDARAAEMLEALQE 371 (373)
T ss_pred -C-----CHHHHHHHHHHHHhcCCchHHHH-HH---H-HHHHCCHHHHHHHHHHHHHh
Confidence 2 78999999999876322222222 11 1 34444556666767665543
No 110
>PRK10125 putative glycosyl transferase; Provisional
Probab=98.31 E-value=0.002 Score=64.26 Aligned_cols=115 Identities=12% Similarity=0.073 Sum_probs=65.3
Q ss_pred eEEEEeCcccCCCHHHHHHHHHHHHhCCCCE-EEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCC-h---hhhhc
Q 011765 279 VVYVAFGSEAKPSQEELTEIALGLELSKLPF-FWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAP-Q---LAILA 353 (478)
Q Consensus 279 ~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vp-q---~~vL~ 353 (478)
.+++..|.........+..+++++...+.++ ++.++... ...+ .++....+.. + .++++
T Consensus 242 ~~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~-------~~~~---------~~v~~~g~~~~~~~l~~~y~ 305 (405)
T PRK10125 242 PKIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFS-------PFTA---------GNVVNHGFETDKRKLMSALN 305 (405)
T ss_pred CEEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCC-------cccc---------cceEEecCcCCHHHHHHHHH
Confidence 3444455533223344566888887765544 33343221 1111 2454445543 2 33555
Q ss_pred CCCceeeeec----cChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHH
Q 011765 354 HDSVGGFLTH----AGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESL 422 (478)
Q Consensus 354 ~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i 422 (478)
.+++ ||.- |--+++.||+++|+|+|+....+ ....+ ..+-|..++.. +.+.|++++
T Consensus 306 ~aDv--fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv-~~~~G~lv~~~------d~~~La~~~ 365 (405)
T PRK10125 306 QMDA--LVFSSRVDNYPLILCEALSIGVPVIATHSDA----AREVL-QKSGGKTVSEE------EVLQLAQLS 365 (405)
T ss_pred hCCE--EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHHhE-eCCcEEEECCC------CHHHHHhcc
Confidence 5777 7742 23368999999999999987654 22333 33568888765 677777643
No 111
>PLN02316 synthase/transferase
Probab=98.21 E-value=0.0055 Score=66.83 Aligned_cols=116 Identities=11% Similarity=-0.011 Sum_probs=63.9
Q ss_pred cEEEeccCChh---hhhcCCCceeeeec---cCh-hhHHHHHHhCCcEecccccc--chhh-------HHHHHhhcCeEE
Q 011765 339 GVVYTSWAPQL---AILAHDSVGGFLTH---AGW-SSVVEALQFGMPLIVLTCYA--DQGL-------NAKLLEEKQIVE 402 (478)
Q Consensus 339 n~~~~~~vpq~---~vL~~~~~~~~ItH---gG~-~s~~eal~~GvP~l~~P~~~--DQ~~-------na~~v~~~g~G~ 402 (478)
++.+....+.. .+++.+++ ||.- =|. .+.+||+++|+|+|+....+ |.-. .++.....+-|.
T Consensus 901 rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGf 978 (1036)
T PLN02316 901 RARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGF 978 (1036)
T ss_pred eEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCceE
Confidence 45554344443 46777777 7742 232 58999999999999865432 2111 111011124577
Q ss_pred EeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhccc-CChHHHHHHHHHHHHh
Q 011765 403 LIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDK-GRHDRYVDNFLNYLKN 464 (478)
Q Consensus 403 ~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~i~~~~~~ 464 (478)
..+.. +++.|..+|.+++.. ....++....+++..... -+-.+.++..++.++.
T Consensus 979 lf~~~------d~~aLa~AL~raL~~--~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~~ 1033 (1036)
T PLN02316 979 SFDGA------DAAGVDYALNRAISA--WYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYHS 1033 (1036)
T ss_pred EeCCC------CHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 77653 788999999999982 122233333333332222 2335566666665544
No 112
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.18 E-value=0.0027 Score=63.80 Aligned_cols=77 Identities=22% Similarity=0.167 Sum_probs=52.8
Q ss_pred CCcEEEeccCChhh---hhcCCCceeeee-----ccChhhHHHHHHhCCcEeccccccchhhHHHHHh---hcCeEEEee
Q 011765 337 GRGVVYTSWAPQLA---ILAHDSVGGFLT-----HAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLE---EKQIVELIP 405 (478)
Q Consensus 337 ~~n~~~~~~vpq~~---vL~~~~~~~~It-----HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~---~~g~G~~l~ 405 (478)
.+++.+..++|+.+ +|..+++ +|+ |-| .++.||+++|+|+|+.-..+. ....+. +...|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fg-i~~lEAMa~G~pvIa~~~ggp---~~~iv~~~~~g~~G~l~- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFG-IGVVEYMAAGLIPLAHASGGP---LLDIVVPWDGGPTGFLA- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcc-cHHHHHHHcCCcEEEEcCCCC---chheeeccCCCCceEEe-
Confidence 35788888998754 6777777 553 333 488999999999998554321 111222 34567653
Q ss_pred ccCCCCcccHHHHHHHHHHHhc
Q 011765 406 RDEGDGFFTRNSVAESLRLVLV 427 (478)
Q Consensus 406 ~~~~~~~~~~~~l~~~i~~ll~ 427 (478)
. +++++++++.++++
T Consensus 377 --~-----d~~~la~ai~~ll~ 391 (419)
T cd03806 377 --S-----TAEEYAEAIEKILS 391 (419)
T ss_pred --C-----CHHHHHHHHHHHHh
Confidence 2 78999999999998
No 113
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=98.16 E-value=0.00016 Score=72.30 Aligned_cols=148 Identities=18% Similarity=0.218 Sum_probs=89.5
Q ss_pred CceEEEEeCcccCC-CHHHHHHHHHHHHhC--CCCEEEEEecCCCCCCCCCCCCChhhhhh----cCCCcEEEeccCChh
Q 011765 277 GSVVYVAFGSEAKP-SQEELTEIALGLELS--KLPFFWVLKKRLGQADTEPIELPDGFEER----TRGRGVVYTSWAPQL 349 (478)
Q Consensus 277 ~~~v~vs~Gs~~~~-~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~p~~~~~~----~~~~n~~~~~~vpq~ 349 (478)
++..+++.|..... +.+.+.+.+..+.+. +.++.|++-+... .-+.+.+. ....++.+..|+++.
T Consensus 229 ~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~--------~~~~l~~~~~~~~~~~~V~f~G~v~~~ 300 (407)
T cd04946 229 DTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGGP--------LEDTLKELAESKPENISVNFTGELSNS 300 (407)
T ss_pred CCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCch--------HHHHHHHHHHhcCCCceEEEecCCChH
Confidence 34667778877642 233333333333322 2456666543211 11112111 123468888999986
Q ss_pred h---hhcCCCceeeeecc---C-hhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHH
Q 011765 350 A---ILAHDSVGGFLTHA---G-WSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESL 422 (478)
Q Consensus 350 ~---vL~~~~~~~~ItHg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i 422 (478)
+ ++..+++++||... | -++++||+++|+|+|+.. -......+.+.+.|..++... +.++++++|
T Consensus 301 e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~----vgg~~e~i~~~~~G~l~~~~~-----~~~~la~~I 371 (407)
T cd04946 301 EVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATN----VGGTPEIVDNGGNGLLLSKDP-----TPNELVSSL 371 (407)
T ss_pred HHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCC----CCCcHHHhcCCCcEEEeCCCC-----CHHHHHHHH
Confidence 5 44444444577443 2 368999999999999854 444566666666898887653 889999999
Q ss_pred HHHhcccchHHHHHHHHHHHHH
Q 011765 423 RLVLVEEKGQIYRDKAKEMKGL 444 (478)
Q Consensus 423 ~~ll~~~~~~~~~~~a~~~~~~ 444 (478)
.++++ |++.++++.+-+..
T Consensus 372 ~~ll~---~~~~~~~m~~~ar~ 390 (407)
T cd04946 372 SKFID---NEEEYQTMREKARE 390 (407)
T ss_pred HHHHh---CHHHHHHHHHHHHH
Confidence 99999 66666555443333
No 114
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=98.12 E-value=0.00042 Score=68.45 Aligned_cols=89 Identities=17% Similarity=0.204 Sum_probs=61.8
Q ss_pred CcEEEeccCCh-hhhhcCCCceeeeecc--ChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCccc
Q 011765 338 RGVVYTSWAPQ-LAILAHDSVGGFLTHA--GWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFT 414 (478)
Q Consensus 338 ~n~~~~~~vpq-~~vL~~~~~~~~ItHg--G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~ 414 (478)
+++.+..+.++ ..++..+++-++.++. ...++.||+++|+|+|+..... .....+.+...|..++.. +
T Consensus 261 ~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~~~G~lv~~~------d 331 (372)
T cd04949 261 DYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDGENGYLVPKG------D 331 (372)
T ss_pred ceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccCCCceEeCCC------c
Confidence 46777666665 4578888884444543 3469999999999999964321 234445555678877663 8
Q ss_pred HHHHHHHHHHHhcccchHHHHHHH
Q 011765 415 RNSVAESLRLVLVEEKGQIYRDKA 438 (478)
Q Consensus 415 ~~~l~~~i~~ll~~~~~~~~~~~a 438 (478)
.++++++|.++++ +++.++++
T Consensus 332 ~~~la~~i~~ll~---~~~~~~~~ 352 (372)
T cd04949 332 IEALAEAIIELLN---DPKLLQKF 352 (372)
T ss_pred HHHHHHHHHHHHc---CHHHHHHH
Confidence 8999999999999 65444333
No 115
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=98.08 E-value=2.9e-05 Score=67.49 Aligned_cols=92 Identities=17% Similarity=0.299 Sum_probs=69.9
Q ss_pred CCcEEEeccCCh---hhhhcCCCceeeeec----cChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCC
Q 011765 337 GRGVVYTSWAPQ---LAILAHDSVGGFLTH----AGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEG 409 (478)
Q Consensus 337 ~~n~~~~~~vpq---~~vL~~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~ 409 (478)
.+++.+..++++ .+++..+++ +|+. ++.+++.||+++|+|+|+ .+-..+...+.+.+.|..++..
T Consensus 72 ~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~----~~~~~~~e~~~~~~~g~~~~~~-- 143 (172)
T PF00534_consen 72 KENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIA----SDIGGNNEIINDGVNGFLFDPN-- 143 (172)
T ss_dssp GTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEE----ESSTHHHHHSGTTTSEEEESTT--
T ss_pred ccccccccccccccccccccccee--ccccccccccccccccccccccceee----ccccCCceeeccccceEEeCCC--
Confidence 357888888883 457777787 7765 556799999999999998 5566677777777889998774
Q ss_pred CCcccHHHHHHHHHHHhcccchHHHHHHHHHHHH
Q 011765 410 DGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKG 443 (478)
Q Consensus 410 ~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~ 443 (478)
+.+++.++|.++++ ++++++++.+-++
T Consensus 144 ----~~~~l~~~i~~~l~---~~~~~~~l~~~~~ 170 (172)
T PF00534_consen 144 ----DIEELADAIEKLLN---DPELRQKLGKNAR 170 (172)
T ss_dssp ----SHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHC---CHHHHHHHHHHhc
Confidence 89999999999999 7776666665443
No 116
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=98.06 E-value=0.0016 Score=63.19 Aligned_cols=109 Identities=14% Similarity=0.183 Sum_probs=81.1
Q ss_pred CcEEEeccCChhhhh---cCCCceeeeecc-------C------hhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeE
Q 011765 338 RGVVYTSWAPQLAIL---AHDSVGGFLTHA-------G------WSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIV 401 (478)
Q Consensus 338 ~n~~~~~~vpq~~vL---~~~~~~~~ItHg-------G------~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G 401 (478)
+|+.+..|+|+.++. .. +.+++...- . -+-+.+++++|+|+|+. ++...+..|++.++|
T Consensus 207 ~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~~~~G 281 (333)
T PRK09814 207 ANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVENGLG 281 (333)
T ss_pred CCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHhCCce
Confidence 489999999997753 33 443333211 1 12377889999999984 567888999999999
Q ss_pred EEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHH
Q 011765 402 ELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLN 460 (478)
Q Consensus 402 ~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~ 460 (478)
..++ +.+++.+++.++.++ .-..+++|++++++.++.+-...++++.++.
T Consensus 282 ~~v~--------~~~el~~~l~~~~~~-~~~~m~~n~~~~~~~~~~g~~~~~~~~~~~~ 331 (333)
T PRK09814 282 FVVD--------SLEELPEIIDNITEE-EYQEMVENVKKISKLLRNGYFTKKALVDAIK 331 (333)
T ss_pred EEeC--------CHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHhcchhHHHHHHHHHh
Confidence 9986 345788888886542 2467899999999999999888888877665
No 117
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=98.06 E-value=0.0014 Score=67.07 Aligned_cols=118 Identities=13% Similarity=0.164 Sum_probs=72.7
Q ss_pred CCcEEEeccCChhhhhcCCCceeeee---ccCh-hhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCC-
Q 011765 337 GRGVVYTSWAPQLAILAHDSVGGFLT---HAGW-SSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDG- 411 (478)
Q Consensus 337 ~~n~~~~~~vpq~~vL~~~~~~~~It---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~- 411 (478)
.+++.+..+.+..+++..+++ +|. .=|. .+++||+++|+|+|+.... ..+...+++-.-|..++...+.+
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~---~G~~eiI~~g~nG~lv~~~~~~~d 449 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVN---YGNPTFIEDNKNGYLIPIDEEEDD 449 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCC---CCCHHHccCCCCEEEEeCCccccc
Confidence 356788888888889988888 664 3344 6899999999999995542 12444555555688776321000
Q ss_pred ccc-HHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHH
Q 011765 412 FFT-RNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLK 463 (478)
Q Consensus 412 ~~~-~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~ 463 (478)
.-+ .+.|+++|.++++++.-..+.+++.+.++. =..+..++.+.+.++
T Consensus 450 ~~~~~~~la~~I~~ll~~~~~~~~~~~a~~~a~~----fs~~~v~~~w~~ll~ 498 (500)
T TIGR02918 450 EDQIITALAEKIVEYFNSNDIDAFHEYSYQIAEG----FLTANIIEKWKKLVR 498 (500)
T ss_pred hhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHh
Confidence 012 788999999999721112334444443333 333456666666554
No 118
>PRK14099 glycogen synthase; Provisional
Probab=97.98 E-value=0.0061 Score=62.31 Aligned_cols=100 Identities=11% Similarity=0.081 Sum_probs=57.1
Q ss_pred CCCceeeee---ccCh-hhHHHHHHhCCcEecccccc--chhhHHHHHhh---cCeEEEeeccCCCCcccHHHHHHHHHH
Q 011765 354 HDSVGGFLT---HAGW-SSVVEALQFGMPLIVLTCYA--DQGLNAKLLEE---KQIVELIPRDEGDGFFTRNSVAESLRL 424 (478)
Q Consensus 354 ~~~~~~~It---HgG~-~s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~---~g~G~~l~~~~~~~~~~~~~l~~~i~~ 424 (478)
.+++ ||. +=|. .+.+||+++|+|.|+....+ |--....-..+ .+.|..++.. +.++|.++|.+
T Consensus 369 ~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~------d~~~La~ai~~ 440 (485)
T PRK14099 369 GADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSPV------TADALAAALRK 440 (485)
T ss_pred cCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCCC------CHHHHHHHHHH
Confidence 3555 774 3444 47899999998777754322 21111100000 1467777664 78999999987
Q ss_pred ---HhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHhcc
Q 011765 425 ---VLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLKNHR 466 (478)
Q Consensus 425 ---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 466 (478)
+++ |++.++++.+-+. ...-+-++.++..++.+++..
T Consensus 441 a~~l~~---d~~~~~~l~~~~~--~~~fSw~~~a~~y~~lY~~l~ 480 (485)
T PRK14099 441 TAALFA---DPVAWRRLQRNGM--TTDVSWRNPAQHYAALYRSLV 480 (485)
T ss_pred HHHHhc---CHHHHHHHHHHhh--hhcCChHHHHHHHHHHHHHHH
Confidence 566 5555554444321 223333667777777666543
No 119
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.89 E-value=0.013 Score=60.87 Aligned_cols=100 Identities=12% Similarity=0.094 Sum_probs=61.6
Q ss_pred EEEeccCChh-hhhcCCCceeeee---ccC-hhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCccc
Q 011765 340 VVYTSWAPQL-AILAHDSVGGFLT---HAG-WSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFT 414 (478)
Q Consensus 340 ~~~~~~vpq~-~vL~~~~~~~~It---HgG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~ 414 (478)
+.+..+.++. ++++.+++ ||. +=| .+++.||+++|+|+|+....+... +.+ |.+-.+. . +
T Consensus 603 V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~-g~nGll~--~-----D 667 (794)
T PLN02501 603 LNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRS-FPNCLTY--K-----T 667 (794)
T ss_pred EEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Eee-cCCeEec--C-----C
Confidence 5555666654 48888887 774 233 378999999999999987654321 222 2222222 3 7
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHH
Q 011765 415 RNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYL 462 (478)
Q Consensus 415 ~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~ 462 (478)
.+++.++|.++|+ ++..+..+.. ...-+-+++++.++++-
T Consensus 668 ~EafAeAI~~LLs---d~~~rl~~~a-----~~~~SWeAaadrLle~~ 707 (794)
T PLN02501 668 SEDFVAKVKEALA---NEPQPLTPEQ-----RYNLSWEAATQRFMEYS 707 (794)
T ss_pred HHHHHHHHHHHHh---CchhhhHHHH-----HhhCCHHHHHHHHHHhh
Confidence 8999999999999 4443322221 12333455666666654
No 120
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.87 E-value=0.0013 Score=59.36 Aligned_cols=69 Identities=26% Similarity=0.252 Sum_probs=50.8
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChhHHHHHHHHH
Q 011765 16 AFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYDEVKYLKQSF 95 (478)
Q Consensus 16 ~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 95 (478)
..|+-.....|++.|.++||+|++++
T Consensus 12 ~~G~~~~~~~l~~~L~~~g~~v~v~~------------------------------------------------------ 37 (229)
T cd01635 12 GGGVELVLLDLAKALARRGHEVEVVA------------------------------------------------------ 37 (229)
T ss_pred CCCchhHHHHHHHHHHHcCCeEEEEE------------------------------------------------------
Confidence 55999999999999999999999988
Q ss_pred hhhhHHHHHHHhhcCCCEEEEcCCcccHH---HHHHHhCCCeEEEec
Q 011765 96 DCLEEPMAKLLQSLAPDWLLFDFAAYWLP---ARARELGIPSGFFSI 139 (478)
Q Consensus 96 ~~~~~~l~~ll~~~~pD~vI~D~~~~~~~---~~A~~lgIP~i~~~~ 139 (478)
.+...+...+++.+||+|+......... ..+...++|++....
T Consensus 38 -~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~i~~~h 83 (229)
T cd01635 38 -LLLLLLLRILRGFKPDVVHAHGYYPAPLALLLAARLLGIPLVLTVH 83 (229)
T ss_pred -echHHHHHHHhhcCCCEEEEcCCCcHHHHHHHHHhhCCCCEEEEEc
Confidence 1112233344477999999886554333 457788999887644
No 121
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=0.00061 Score=54.38 Aligned_cols=129 Identities=19% Similarity=0.138 Sum_probs=77.1
Q ss_pred EEEEeCcccCCCHHHHHH--HHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhh-hhcCCC
Q 011765 280 VYVAFGSEAKPSQEELTE--IALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLA-ILAHDS 356 (478)
Q Consensus 280 v~vs~Gs~~~~~~~~~~~--~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~-vL~~~~ 356 (478)
+||+-||....-...+.. +.+-.+....++|..++..+ .+.... -.++-+++.+-.+ +..-++
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d------~kpvag--------l~v~~F~~~~kiQsli~dar 67 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGD------IKPVAG--------LRVYGFDKEEKIQSLIHDAR 67 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCC------cccccc--------cEEEeechHHHHHHHhhcce
Confidence 689999985311111111 22222333456788887541 122111 1233344445433 444455
Q ss_pred ceeeeeccChhhHHHHHHhCCcEeccccc--------cchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhc
Q 011765 357 VGGFLTHAGWSSVVEALQFGMPLIVLTCY--------ADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLV 427 (478)
Q Consensus 357 ~~~~ItHgG~~s~~eal~~GvP~l~~P~~--------~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~ 427 (478)
+ +|+|||-||+..++..++|.|++|-. ..|-..|..+.+.+.-+.....+. .-.+-+.....+++.
T Consensus 68 I--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~~~vv~~spte~---~L~a~l~~s~~~v~~ 141 (161)
T COG5017 68 I--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEINYVVACSPTEL---VLQAGLQVSVADVLH 141 (161)
T ss_pred E--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhcCceEEEcCCch---hhHHhHhhhhhhhcC
Confidence 5 99999999999999999999999953 378889999999887766654330 133444444445544
No 122
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.74 E-value=0.0006 Score=67.76 Aligned_cols=169 Identities=18% Similarity=0.217 Sum_probs=91.4
Q ss_pred CCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhc-----CCCcEEEeccCChh
Q 011765 275 EKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERT-----RGRGVVYTSWAPQL 349 (478)
Q Consensus 275 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~-----~~~n~~~~~~vpq~ 349 (478)
+++.++|.||....+.+++.+..-.+-|+..+.-.+|....... . ...+.+.. ..+.+.+..+.+..
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~------~--~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ 353 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPAS------G--EARLRRRFAAHGVDPDRIIFSPVAPRE 353 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTT------H--HHHHHHHHHHTTS-GGGEEEEE---HH
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHH------H--HHHHHHHHHHcCCChhhEEEcCCCCHH
Confidence 34569999999999999988888888888888888888764321 0 11222221 23467777777765
Q ss_pred hhh---cCCCceeee---eccChhhHHHHHHhCCcEecccc-ccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHH
Q 011765 350 AIL---AHDSVGGFL---THAGWSSVVEALQFGMPLIVLTC-YADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESL 422 (478)
Q Consensus 350 ~vL---~~~~~~~~I---tHgG~~s~~eal~~GvP~l~~P~-~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i 422 (478)
+-| ..+|+ ++ ..+|.+|++|||+.|||+|.+|- ..=...-|..+..+|+...+-. +.++-.+..
T Consensus 354 ehl~~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~-------s~~eYv~~A 424 (468)
T PF13844_consen 354 EHLRRYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIAD-------SEEEYVEIA 424 (468)
T ss_dssp HHHHHGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-S-------SHHHHHHHH
T ss_pred HHHHHhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCC-------CHHHHHHHH
Confidence 543 33444 65 56788999999999999999993 3344556677888899876533 555544444
Q ss_pred HHHhcccchHHHHHHHH-HHHHHhccc--CChHHHHHHHHHHHH
Q 011765 423 RLVLVEEKGQIYRDKAK-EMKGLFGDK--GRHDRYVDNFLNYLK 463 (478)
Q Consensus 423 ~~ll~~~~~~~~~~~a~-~~~~~~~~~--~~~~~~~~~i~~~~~ 463 (478)
.++-+ |.+++++.+ ++++.+... -...+.+..+++.++
T Consensus 425 v~La~---D~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~ 465 (468)
T PF13844_consen 425 VRLAT---DPERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYR 465 (468)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHH
T ss_pred HHHhC---CHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 45555 455444433 333333222 222445555665554
No 123
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.70 E-value=0.039 Score=56.27 Aligned_cols=65 Identities=18% Similarity=0.192 Sum_probs=48.2
Q ss_pred CCcEEEeccCCh-hhhhcCCCceeeee---ccC-hhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeecc
Q 011765 337 GRGVVYTSWAPQ-LAILAHDSVGGFLT---HAG-WSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRD 407 (478)
Q Consensus 337 ~~n~~~~~~vpq-~~vL~~~~~~~~It---HgG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~ 407 (478)
.+++.+..|..+ ..++..+++ ||. .-| -+++.||+++|+|+|+... ..+...+.+-..|..++..
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~dG~nG~LVp~~ 523 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIEGVSGFILDDA 523 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHcccCCcEEEECCC
Confidence 357888888655 457888888 775 345 4799999999999998654 4566667777788888765
No 124
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=97.67 E-value=0.078 Score=53.00 Aligned_cols=168 Identities=11% Similarity=0.101 Sum_probs=97.3
Q ss_pred HhhhcccCCCCceEEEEeCcccCC------CH----HHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCC--CChhhhhh
Q 011765 267 IKEWLDEQEKGSVVYVAFGSEAKP------SQ----EELTEIALGLELSKLPFFWVLKKRLGQADTEPIE--LPDGFEER 334 (478)
Q Consensus 267 ~~~~l~~~~~~~~v~vs~Gs~~~~------~~----~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~--~p~~~~~~ 334 (478)
+..|+....+++.|-||.-..... .. +.+.++++.+...+++++++-...... .....+ .-..+.+.
T Consensus 224 ~~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~-~~~~dD~~~~~~l~~~ 302 (426)
T PRK10017 224 VQHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGID-SYNKDDRMVALNLRQH 302 (426)
T ss_pred hhhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCcc-CCCCchHHHHHHHHHh
Confidence 345655444456888886543311 11 334445555555688877654221000 000111 11223333
Q ss_pred cCC-CcEE--EeccCCh--hhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEE-eeccC
Q 011765 335 TRG-RGVV--YTSWAPQ--LAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVEL-IPRDE 408 (478)
Q Consensus 335 ~~~-~n~~--~~~~vpq--~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~-l~~~~ 408 (478)
+.. .++. ..++-+. ..+++++++ +|..= +=++.-|+.+|||++++++ | +.....+...|...+ .+..+
T Consensus 303 ~~~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~R-lHa~I~a~~~gvP~i~i~Y--~-~K~~~~~~~lg~~~~~~~~~~ 376 (426)
T PRK10017 303 VSDPARYHVVMDELNDLEMGKILGACEL--TVGTR-LHSAIISMNFGTPAIAINY--E-HKSAGIMQQLGLPEMAIDIRH 376 (426)
T ss_pred cccccceeEecCCCChHHHHHHHhhCCE--EEEec-chHHHHHHHcCCCEEEeee--h-HHHHHHHHHcCCccEEechhh
Confidence 332 2222 2223333 367877877 88432 2347788999999999998 2 555556688888877 66666
Q ss_pred CCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcc
Q 011765 409 GDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGD 447 (478)
Q Consensus 409 ~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~ 447 (478)
++.++|.+.+.+++++ -++++++.++--+..+.
T Consensus 377 ----l~~~~Li~~v~~~~~~--r~~~~~~l~~~v~~~r~ 409 (426)
T PRK10017 377 ----LLDGSLQAMVADTLGQ--LPALNARLAEAVSRERQ 409 (426)
T ss_pred ----CCHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHH
Confidence 8999999999999994 35677776666665544
No 125
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.66 E-value=0.014 Score=53.95 Aligned_cols=112 Identities=19% Similarity=0.182 Sum_probs=72.9
Q ss_pred cEEEE-ecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC--CccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCC
Q 011765 7 LQIAM-FPWLAFGHMIPWLELAKLIAQKGHKIFFISTP--RNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDL 83 (478)
Q Consensus 7 ~~il~-~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~--~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~ 83 (478)
|||.| +..+ -|+--+..|...|.++||+|.+-+-+ ...+.+...| +.+..|. .. +.
T Consensus 1 mkVwiDI~n~--~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~yg------f~~~~Ig----k~---g~------ 59 (346)
T COG1817 1 MKVWIDIGNP--PHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLYG------FPYKSIG----KH---GG------ 59 (346)
T ss_pred CeEEEEcCCc--chhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHhC------CCeEeec----cc---CC------
Confidence 45544 3333 46667899999999999999887643 3334455555 7777774 11 00
Q ss_pred ChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEEecchH
Q 011765 84 PYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFFSIFTA 142 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~ 142 (478)
.+..+.+...... .-.|-++..+.+||+.+. -.++.+..+|.-+|+|.|.+....-
T Consensus 60 -~tl~~Kl~~~~eR-~~~L~ki~~~~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~eh 115 (346)
T COG1817 60 -VTLKEKLLESAER-VYKLSKIIAEFKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEH 115 (346)
T ss_pred -ccHHHHHHHHHHH-HHHHHHHHhhcCCceEee-cCCcchhhHHhhcCCceEEecCChh
Confidence 0011112222111 226778888999999999 5677899999999999999866443
No 126
>PLN02939 transferase, transferring glycosyl groups
Probab=97.55 E-value=0.15 Score=55.28 Aligned_cols=118 Identities=9% Similarity=0.028 Sum_probs=67.9
Q ss_pred CcEEEeccCChh---hhhcCCCceeeeec---cC-hhhHHHHHHhCCcEecccccc--chhhH--HHHH-hhcCeEEEee
Q 011765 338 RGVVYTSWAPQL---AILAHDSVGGFLTH---AG-WSSVVEALQFGMPLIVLTCYA--DQGLN--AKLL-EEKQIVELIP 405 (478)
Q Consensus 338 ~n~~~~~~vpq~---~vL~~~~~~~~ItH---gG-~~s~~eal~~GvP~l~~P~~~--DQ~~n--a~~v-~~~g~G~~l~ 405 (478)
+++.+..+.+.. .+++.+++ ||.- =| -.+.+||+++|+|+|+....+ |.-.+ ...+ .+-+-|...+
T Consensus 837 drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~ 914 (977)
T PLN02939 837 NNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFL 914 (977)
T ss_pred CeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEec
Confidence 467777777764 47777777 7742 22 257999999999999876543 21110 1111 1224577666
Q ss_pred ccCCCCcccHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHhc
Q 011765 406 RDEGDGFFTRNSVAESLRLVLVE-EKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLKNH 465 (478)
Q Consensus 406 ~~~~~~~~~~~~l~~~i~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (478)
.. +++.|..+|.+++.. ..++..++++.+ +.+...-+-+..++..++.++..
T Consensus 915 ~~------D~eaLa~AL~rAL~~~~~dpe~~~~L~~--~am~~dFSWe~~A~qYeeLY~~l 967 (977)
T PLN02939 915 TP------DEQGLNSALERAFNYYKRKPEVWKQLVQ--KDMNIDFSWDSSASQYEELYQRA 967 (977)
T ss_pred CC------CHHHHHHHHHHHHHHhccCHHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHHH
Confidence 53 788888888887640 004454444432 11222333456666666666544
No 127
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.41 E-value=0.00061 Score=56.44 Aligned_cols=126 Identities=21% Similarity=0.240 Sum_probs=67.5
Q ss_pred eEEEEeCcccC-CCHHHHHH-HHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCCh-hhhhcCC
Q 011765 279 VVYVAFGSEAK-PSQEELTE-IALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQ-LAILAHD 355 (478)
Q Consensus 279 ~v~vs~Gs~~~-~~~~~~~~-~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq-~~vL~~~ 355 (478)
+.++++|+... .+.+.+.+ +++.+.+...++-+.+-+. .|+.+.+. ..+|+.+..|++. .++++.+
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~----------~~~~l~~~-~~~~v~~~g~~~e~~~~l~~~ 71 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGN----------GPDELKRL-RRPNVRFHGFVEELPEILAAA 71 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECE----------SS-HHCCH-HHCTEEEE-S-HHHHHHHHC-
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeC----------CHHHHHHh-cCCCEEEcCCHHHHHHHHHhC
Confidence 44555666553 23343444 5555654333444444322 11222221 2348999999865 4578888
Q ss_pred Cceeeeec--cC-hhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhc
Q 011765 356 SVGGFLTH--AG-WSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLV 427 (478)
Q Consensus 356 ~~~~~ItH--gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~ 427 (478)
++.+..+. .| .+++.|++++|+|+|+.+. .....++..+.|..+ .. +++++.++|+++++
T Consensus 72 dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~~~~~~~~~~--~~-----~~~~l~~~i~~l~~ 134 (135)
T PF13692_consen 72 DVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIVEEDGCGVLV--AN-----DPEELAEAIERLLN 134 (135)
T ss_dssp SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS---SEEEE---TT------HHHHHHHHHHHHH
T ss_pred CEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhheeecCCeEEE--CC-----CHHHHHHHHHHHhc
Confidence 88655442 23 4899999999999999766 123344446888877 33 89999999999987
No 128
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.41 E-value=0.004 Score=63.71 Aligned_cols=93 Identities=19% Similarity=0.256 Sum_probs=65.9
Q ss_pred CCcEEEeccCChhhhhcCCCceeeeec----cChhhHHHHHHhCCcEeccccccchhhHHHHHhhc------CeEEEeec
Q 011765 337 GRGVVYTSWAPQLAILAHDSVGGFLTH----AGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEK------QIVELIPR 406 (478)
Q Consensus 337 ~~n~~~~~~vpq~~vL~~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~------g~G~~l~~ 406 (478)
.+++.+.....-.+++..+++ +|.- |--+++.||+++|+|+|+. |.......+.+. ..|..++.
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv~~~~~~~~g~~G~lv~~ 426 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELIEGADDEALGPAGEVVPP 426 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHhcCCcccccCCceEEECC
Confidence 357877775555778888887 6532 3347999999999999994 444455555552 26777765
Q ss_pred cCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Q 011765 407 DEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGL 444 (478)
Q Consensus 407 ~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~ 444 (478)
. +.++++++|.++++ |++.++++.+-+..
T Consensus 427 ~------d~~~la~ai~~ll~---~~~~~~~~~~~a~~ 455 (475)
T cd03813 427 A------DPEALARAILRLLK---DPELRRAMGEAGRK 455 (475)
T ss_pred C------CHHHHHHHHHHHhc---CHHHHHHHHHHHHH
Confidence 3 78999999999999 77666665544443
No 129
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.39 E-value=0.0072 Score=58.32 Aligned_cols=108 Identities=13% Similarity=0.018 Sum_probs=67.0
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCccccCCCCCCCCCCCeE-EEEecCCCCCCCCCCccccCCCC
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQK--GHKIFFISTPRNIDRLPRLPQNLASMIQ-FVKISLPHVDNLRENAEATIDLP 84 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~g~~~~~~i~-~~~i~~~~~~~l~~~~~~~~~~~ 84 (478)
|||++-....|++.-+..+.++|+++ +.+|++++.+.+.+.++.. +.+. +..++. . . ... .
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~~-----p~vd~v~~~~~----~--~--~~~-~-- 64 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRLH-----PAVDEVIPVAL----R--R--WRK-T-- 64 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhcC-----CCccEEEEech----h--h--hhh-c--
Confidence 68999999999999999999999998 9999999999987776643 3343 344421 0 0 000 0
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEE
Q 011765 85 YDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGF 136 (478)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~ 136 (478)
.+..........+...+++.++|++|.-........++...+.+.+.
T Consensus 65 -----~~~~~~~~~~~~~~~~lr~~~yD~vi~~~~~~~s~~l~~~~~~~r~g 111 (319)
T TIGR02193 65 -----LFSAATWREIKALRALLRAERYDAVIDAQGLIKSALVARMARGPRHG 111 (319)
T ss_pred -----cccchhHHHHHHHHHHHhhccchhhhhhhhhHHHHHHHHhhCCceec
Confidence 00000001122344556778999998543333344566666644343
No 130
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=97.24 E-value=0.0052 Score=51.13 Aligned_cols=103 Identities=13% Similarity=0.189 Sum_probs=68.0
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChhH
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYDE 87 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~~ 87 (478)
|||+++.....| ...+++.|.++||+|++++.....+.... ..++.+..++. . . ...
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~-----~~~i~~~~~~~----~------~--k~~--- 57 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEI-----IEGIKVIRLPS----P------R--KSP--- 57 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhH-----hCCeEEEEecC----C------C--Ccc---
Confidence 578887777666 45779999999999999999655432221 13377777742 1 0 001
Q ss_pred HHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcc---cHHHHHHHhC-CCeEEEec
Q 011765 88 VKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAY---WLPARARELG-IPSGFFSI 139 (478)
Q Consensus 88 ~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~---~~~~~A~~lg-IP~i~~~~ 139 (478)
+..+ . +. .+..++++.+||+|.+....+ .+..++...+ +|+|....
T Consensus 58 ~~~~----~-~~-~l~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 58 LNYI----K-YF-RLRKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred HHHH----H-HH-HHHHHhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 1121 1 23 778889999999998776543 2445678888 89986544
No 131
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=96.74 E-value=0.38 Score=45.98 Aligned_cols=59 Identities=29% Similarity=0.225 Sum_probs=41.9
Q ss_pred ChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhh----HHHHHhhcCeEEEeecc
Q 011765 347 PQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGL----NAKLLEEKQIVELIPRD 407 (478)
Q Consensus 347 pq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~----na~~v~~~g~G~~l~~~ 407 (478)
|....|+.++. ++||-=-.+-+.||+..|+|+.++|.-. +.. -.+.+++.|+-..++..
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L~~~g~~r~~~~~ 283 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSLEERGAVRPFTGW 283 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHHHHCCCEEECCCc
Confidence 56778888887 3555555689999999999999999876 322 23345556776666554
No 132
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=96.68 E-value=0.0042 Score=52.58 Aligned_cols=96 Identities=19% Similarity=0.191 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChhHHHHHHHHHhhhhH
Q 011765 21 IPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYDEVKYLKQSFDCLEE 100 (478)
Q Consensus 21 ~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (478)
.-+..|+++|.++||+|++++.......-+.. ..++.+..++.+.... .... . . ...
T Consensus 5 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~------~~~~-~----~--------~~~ 61 (160)
T PF13579_consen 5 RYVRELARALAARGHEVTVVTPQPDPEDDEEE----EDGVRVHRLPLPRRPW------PLRL-L----R--------FLR 61 (160)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE---GGG-SEE----ETTEEEEEE--S-SSS------GGGH-C----C--------HHH
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCCCcccccc----cCCceEEeccCCccch------hhhh-H----H--------HHH
Confidence 34688999999999999999976655532211 1348888876422210 0000 0 0 112
Q ss_pred HHHHHH--hhcCCCEEEEcCCcc-cHHHHHH-HhCCCeEEEec
Q 011765 101 PMAKLL--QSLAPDWLLFDFAAY-WLPARAR-ELGIPSGFFSI 139 (478)
Q Consensus 101 ~l~~ll--~~~~pD~vI~D~~~~-~~~~~A~-~lgIP~i~~~~ 139 (478)
.+.+++ +..+||+|.+..... ....+++ ..++|+|....
T Consensus 62 ~~~~~l~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 62 RLRRLLAARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp HHHHHCHHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred HHHHHHhhhccCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 445555 778999998876332 2233444 88999998754
No 133
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.66 E-value=0.13 Score=50.32 Aligned_cols=107 Identities=14% Similarity=0.086 Sum_probs=70.0
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCccccCCCCCCCCCCCeE-EEEecCCCCCCCCCCccccC
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQK--GHKIFFISTPRNIDRLPRLPQNLASMIQ-FVKISLPHVDNLRENAEATI 81 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~g~~~~~~i~-~~~i~~~~~~~l~~~~~~~~ 81 (478)
.+||||++-....|++.-+..+.++|+++ +.+|++++.+.+.+.++.. |.+. ++.++ . .
T Consensus 4 ~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~-----P~id~vi~~~-----~---~----- 65 (352)
T PRK10422 4 PFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSEN-----PEINALYGIK-----N---K----- 65 (352)
T ss_pred CCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccC-----CCceEEEEec-----c---c-----
Confidence 36899999999999999999999999997 8999999999888766543 3343 22222 0 0
Q ss_pred CCChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEE
Q 011765 82 DLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGF 136 (478)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~ 136 (478)
.... ...+ .... .+...+++.++|++|.-........++...|.|...
T Consensus 66 ~~~~--~~~~----~~~~-~l~~~lr~~~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 66 KAGA--SEKI----KNFF-SLIKVLRANKYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred cccH--HHHH----HHHH-HHHHHHhhCCCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 0000 0000 1111 233456677999999654444455667777877654
No 134
>PHA01630 putative group 1 glycosyl transferase
Probab=96.45 E-value=0.14 Score=49.55 Aligned_cols=107 Identities=12% Similarity=0.111 Sum_probs=65.0
Q ss_pred cCChhh---hhcCCCceeee--ec-cC-hhhHHHHHHhCCcEeccccccchhhHHHHHhhc-------------------
Q 011765 345 WAPQLA---ILAHDSVGGFL--TH-AG-WSSVVEALQFGMPLIVLTCYADQGLNAKLLEEK------------------- 398 (478)
Q Consensus 345 ~vpq~~---vL~~~~~~~~I--tH-gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~------------------- 398 (478)
++|..+ +++.+++ || ++ .| -.++.||+++|+|+|+.-..+ ....+.+-
T Consensus 197 ~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg----~~E~i~~~~ng~lv~~~~~~~~~~~~~ 270 (331)
T PHA01630 197 PLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGA----WSEWVLSNLDVYWIKSGRKPKLWYTNP 270 (331)
T ss_pred cCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCC----chhhccCCCceEEeeecccccccccCC
Confidence 466544 5777888 65 33 33 368999999999999976532 11122221
Q ss_pred -CeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHh
Q 011765 399 -QIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLKN 464 (478)
Q Consensus 399 -g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~ 464 (478)
++|..++ .+.+++.+++.+++.+..++.++++++.-++...+.-+-++.++.+++.+++
T Consensus 271 ~~~G~~v~-------~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 271 IHVGYFLD-------PDIEDAYQKLLEALANWTPEKKKENLEGRAILYRENYSYNAIAKMWEKILEK 330 (331)
T ss_pred cccccccC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 2344332 2567778888888873111566666666555555555556677777776643
No 135
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=96.34 E-value=0.28 Score=47.87 Aligned_cols=106 Identities=13% Similarity=0.068 Sum_probs=69.6
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCccccCCCCCCCCCCCeE-EEEecCCCCCCCCCCccccCCCC
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQK--GHKIFFISTPRNIDRLPRLPQNLASMIQ-FVKISLPHVDNLRENAEATIDLP 84 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~g~~~~~~i~-~~~i~~~~~~~l~~~~~~~~~~~ 84 (478)
|||++-..+.|++.-+..+.++|+++ +.+|++++.+.+.+.++.. +.+. +..++ .. . . ...
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~-----p~vd~vi~~~----~~----~-~--~~~ 64 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN-----PDINALYGLD----RK----K-A--KAG 64 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC-----CCccEEEEeC----hh----h-h--cch
Confidence 68999999999999999999999997 8999999999888766543 3343 23332 00 0 0 000
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEE
Q 011765 85 YDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFF 137 (478)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~ 137 (478)
...+ ..+. .+...+++.++|++|.-.....+..++...|.|.-.-
T Consensus 65 ---~~~~----~~~~-~l~~~lr~~~yD~vidl~~~~~s~ll~~l~~a~~riG 109 (344)
T TIGR02201 65 ---ERKL----ANQF-HLIKVLRANRYDLVVNLTDQWMVAILVKLLNARVKIG 109 (344)
T ss_pred ---HHHH----HHHH-HHHHHHHhCCCCEEEECCcchHHHHHHHhcCCCeEEe
Confidence 0000 1111 2334456779999996654555677888889886543
No 136
>PHA01633 putative glycosyl transferase group 1
Probab=96.32 E-value=0.22 Score=48.00 Aligned_cols=100 Identities=17% Similarity=0.183 Sum_probs=60.4
Q ss_pred CcEEEe---ccCChh---hhhcCCCceeeeec---cCh-hhHHHHHHhCCcEecccc------ccch------hhHHHHH
Q 011765 338 RGVVYT---SWAPQL---AILAHDSVGGFLTH---AGW-SSVVEALQFGMPLIVLTC------YADQ------GLNAKLL 395 (478)
Q Consensus 338 ~n~~~~---~~vpq~---~vL~~~~~~~~ItH---gG~-~s~~eal~~GvP~l~~P~------~~DQ------~~na~~v 395 (478)
+++.+. .++++. ++++.+++ ||.- =|+ .++.||+++|+|+|+.-. .+|+ .++..-.
T Consensus 201 ~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~ 278 (335)
T PHA01633 201 ANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEY 278 (335)
T ss_pred CcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHh
Confidence 367766 455554 46677777 7742 344 689999999999998643 2332 2223222
Q ss_pred h--hcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHh
Q 011765 396 E--EKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLF 445 (478)
Q Consensus 396 ~--~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~ 445 (478)
. +.|.|...+. .++++++++|.++++..+.+....++++.++.+
T Consensus 279 ~~~~~g~g~~~~~------~d~~~la~ai~~~~~~~~~~~~~~~~~~~a~~f 324 (335)
T PHA01633 279 YDKEHGQKWKIHK------FQIEDMANAIILAFELQDREERSMKLKELAKKY 324 (335)
T ss_pred cCcccCceeeecC------CCHHHHHHHHHHHHhccChhhhhHHHHHHHHhc
Confidence 2 3466666654 599999999999966221122233444444444
No 137
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.24 E-value=0.0066 Score=46.76 Aligned_cols=61 Identities=23% Similarity=0.264 Sum_probs=48.1
Q ss_pred hHhhhcccCCCCceEEEEeCcccCC---CH--HHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCCh
Q 011765 266 SIKEWLDEQEKGSVVYVAFGSEAKP---SQ--EELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPD 329 (478)
Q Consensus 266 ~~~~~l~~~~~~~~v~vs~Gs~~~~---~~--~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~ 329 (478)
.+..|+-..+++|.|+||+||.... .. ..+..++++++.++..++..+...... ....+|+
T Consensus 29 ~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~~---~lg~lP~ 94 (97)
T PF06722_consen 29 VVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQRA---ELGELPD 94 (97)
T ss_dssp EEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCCG---GCCS-TT
T ss_pred CCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHHH---hhCCCCC
Confidence 3677999999999999999998863 22 478889999999999999998866432 4456776
No 138
>PRK14098 glycogen synthase; Provisional
Probab=96.22 E-value=0.083 Score=54.15 Aligned_cols=170 Identities=9% Similarity=-0.020 Sum_probs=88.9
Q ss_pred ceEEEEeCcccC-CCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhc--CCCcEEEeccCChh---hh
Q 011765 278 SVVYVAFGSEAK-PSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERT--RGRGVVYTSWAPQL---AI 351 (478)
Q Consensus 278 ~~v~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~--~~~n~~~~~~vpq~---~v 351 (478)
.++++..|.... ...+.+.+.+..+.+.+.+++++-.+. ...-+.+.+.. ..+++.+..+++.. .+
T Consensus 307 ~~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvivG~G~--------~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~ 378 (489)
T PRK14098 307 TPLVGVIINFDDFQGAELLAESLEKLVELDIQLVICGSGD--------KEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLA 378 (489)
T ss_pred CCEEEEeccccccCcHHHHHHHHHHHHhcCcEEEEEeCCC--------HHHHHHHHHHHHHCCCCEEEEEecCHHHHHHH
Confidence 356667777663 223444444444443455554443211 00111222111 13578777777764 57
Q ss_pred hcCCCceeeeec---cCh-hhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhc
Q 011765 352 LAHDSVGGFLTH---AGW-SSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLV 427 (478)
Q Consensus 352 L~~~~~~~~ItH---gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~ 427 (478)
++.+++ |+.- =|. .+.+||+++|+|+|+....+-.........+.+.|...+.. +++.+.++|.++++
T Consensus 379 ~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~------d~~~la~ai~~~l~ 450 (489)
T PRK14098 379 IAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIFHDY------TPEALVAKLGEALA 450 (489)
T ss_pred HHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCceeEeCCC------CHHHHHHHHHHHHH
Confidence 777887 6632 122 37889999999988876533111100011123567777653 78999999998763
Q ss_pred ccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHhc
Q 011765 428 EEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLKNH 465 (478)
Q Consensus 428 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (478)
--.+++..+++.+ +.+.+.-+-++.++..++.+++.
T Consensus 451 ~~~~~~~~~~~~~--~~~~~~fsw~~~a~~y~~lY~~~ 486 (489)
T PRK14098 451 LYHDEERWEELVL--EAMERDFSWKNSAEEYAQLYREL 486 (489)
T ss_pred HHcCHHHHHHHHH--HHhcCCCChHHHHHHHHHHHHHH
Confidence 1004333322221 11223333467777777776654
No 139
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=96.00 E-value=0.11 Score=50.75 Aligned_cols=103 Identities=12% Similarity=0.027 Sum_probs=69.4
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCccccCCCCCCCCCCCeEEE-EecCCCCCCCCCCccccCCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQK--GHKIFFISTPRNIDRLPRLPQNLASMIQFV-KISLPHVDNLRENAEATIDL 83 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~-~i~~~~~~~l~~~~~~~~~~ 83 (478)
||||++-..+.|++.-+..+.++|+++ +.+|++++.+...+.++.. |.+.-+ .++ .. . ..
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~-----P~vd~vi~~~--------~~-~---~~ 63 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM-----PEVNEAIPMP--------LG-H---GA 63 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC-----CccCEEEecc--------cc-c---ch
Confidence 789999999999999999999999996 8999999998887766643 333321 111 00 0 00
Q ss_pred ChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEE
Q 011765 84 PYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGF 136 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~ 136 (478)
. .+ .. ...+...+++.++|++|.=....-...++...|+|.-.
T Consensus 64 ~-----~~----~~-~~~l~~~lr~~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 64 L-----EI----GE-RRRLGHSLREKRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred h-----hh----HH-HHHHHHHHHhcCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 0 00 00 11334556777999999765444556677777887654
No 140
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.18 Score=50.80 Aligned_cols=134 Identities=17% Similarity=0.208 Sum_probs=88.1
Q ss_pred CCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhh-----hhcCCCcEEEeccCChh
Q 011765 275 EKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFE-----ERTRGRGVVYTSWAPQL 349 (478)
Q Consensus 275 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~-----~~~~~~n~~~~~~vpq~ 349 (478)
+++-+||+|++...+..++.+..-+.=|+..+--++|...++++ ..+.+.+. +....+.+++.+-.|..
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~------~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~ 500 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDD------AEINARLRDLAEREGVDSERLRFLPPAPNE 500 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCc------HHHHHHHHHHHHHcCCChhheeecCCCCCH
Confidence 45669999999999999988777666676778888898876422 22222222 11224456665555543
Q ss_pred ---hhhcCCCceeee---eccChhhHHHHHHhCCcEeccccccchhh---HHHHHhhcCeEEEeeccCCCCcccHHHHHH
Q 011765 350 ---AILAHDSVGGFL---THAGWSSVVEALQFGMPLIVLTCYADQGL---NAKLLEEKQIVELIPRDEGDGFFTRNSVAE 420 (478)
Q Consensus 350 ---~vL~~~~~~~~I---tHgG~~s~~eal~~GvP~l~~P~~~DQ~~---na~~v~~~g~G~~l~~~~~~~~~~~~~l~~ 420 (478)
+=+..+++ |+ --||..|..|+|..|||||..+ ++|+- -+..+..+|+-..+-.+ .++-++.
T Consensus 501 ~h~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~vA~s------~~dYV~~ 570 (620)
T COG3914 501 DHRARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELVADS------RADYVEK 570 (620)
T ss_pred HHHHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhhcCC------HHHHHHH
Confidence 33444666 77 5699999999999999999865 56653 34456666776666443 3455676
Q ss_pred HHHH
Q 011765 421 SLRL 424 (478)
Q Consensus 421 ~i~~ 424 (478)
+|+-
T Consensus 571 av~~ 574 (620)
T COG3914 571 AVAF 574 (620)
T ss_pred HHHh
Confidence 6643
No 141
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.65 E-value=0.77 Score=44.50 Aligned_cols=102 Identities=14% Similarity=0.074 Sum_probs=67.1
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCccccCCCCCCCCCCCeEE-EEecCCCCCCCCCCccccCCCC
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQK--GHKIFFISTPRNIDRLPRLPQNLASMIQF-VKISLPHVDNLRENAEATIDLP 84 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~g~~~~~~i~~-~~i~~~~~~~l~~~~~~~~~~~ 84 (478)
|||++-..+.|++.-+..+.++|++. +.+|++++.+...+.++.. +.++- ..++ ... . .
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~-----p~id~v~~~~--------~~~----~-~ 62 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERM-----PEIRQAIDMP--------LGH----G-A 62 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcC-----chhceeeecC--------Ccc----c-c
Confidence 68999999999999999999999997 8999999988776665543 22321 1111 000 0 0
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEE
Q 011765 85 YDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGF 136 (478)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~ 136 (478)
.. . .. ...+...+++.++|++|.-........++...|+|.-.
T Consensus 63 ~~---~-----~~-~~~~~~~lr~~~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 63 LE---L-----TE-RRRLGRSLREERYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred hh---h-----hH-HHHHHHHHhhcCCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 00 0 00 01334556777999999875555556677777887653
No 142
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=95.39 E-value=0.96 Score=43.61 Aligned_cols=44 Identities=9% Similarity=0.077 Sum_probs=40.1
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCccccCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQK--GHKIFFISTPRNIDRLP 50 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~ 50 (478)
||||++-..+.|++.-+..+.+.|+++ +.+|++++.+.+.+.++
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~ 46 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPS 46 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHh
Confidence 799999999999999999999999997 99999999988776554
No 143
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.36 E-value=0.2 Score=50.70 Aligned_cols=123 Identities=20% Similarity=0.235 Sum_probs=79.9
Q ss_pred CCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhh-----hhcCCCcEEEeccCChh
Q 011765 275 EKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFE-----ERTRGRGVVYTSWAPQL 349 (478)
Q Consensus 275 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~-----~~~~~~n~~~~~~vpq~ 349 (478)
+++.+||.+|--..+.+++.+..-++-|+..+-.++|..+.... ++ ..|. -...++.+++.+-+.-.
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~------ge--~rf~ty~~~~Gl~p~riifs~va~k~ 827 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAV------GE--QRFRTYAEQLGLEPDRIIFSPVAAKE 827 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEecccc------ch--HHHHHHHHHhCCCccceeeccccchH
Confidence 45569999999999999999888888888888889999876521 00 1111 11123455555444432
Q ss_pred h-----hhcCCCceeeeeccChhhHHHHHHhCCcEeccccccc-hhhHHHHHhhcCeEEEeec
Q 011765 350 A-----ILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYAD-QGLNAKLLEEKQIVELIPR 406 (478)
Q Consensus 350 ~-----vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~D-Q~~na~~v~~~g~G~~l~~ 406 (478)
+ .|.--.++-+.|. |..|.++.|++|||||.+|.-.- -..-+-.+...|+|..+-+
T Consensus 828 eHvrr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak 889 (966)
T KOG4626|consen 828 EHVRRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAK 889 (966)
T ss_pred HHHHhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhh
Confidence 2 2222223335665 68899999999999999996432 2333445677799985543
No 144
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=95.26 E-value=0.12 Score=45.54 Aligned_cols=120 Identities=19% Similarity=0.192 Sum_probs=65.0
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChh
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYD 86 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~ 86 (478)
||||+..==+. +---+..|+++|.+.||+|+++.+...+.-....- .....++......+. +............+
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g~si-t~~~pl~~~~~~~~~-~~~~~~~~~v~GTP-- 75 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGTGHSI-TLHKPLRVTEVEPGH-DPGGVEAYAVSGTP-- 75 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTSTTS---SSSEEEEEEEE-TT-CCSTTEEEEESS-H--
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCcceee-cCCCCeEEEEEEecc-cCCCCCEEEEcCcH--
Confidence 78888755554 44457889999977789999999998765432211 122234443331000 00001111111111
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcC----------Ccc---cHHHHHHHhCCCeEEEec
Q 011765 87 EVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDF----------AAY---WLPARARELGIPSGFFSI 139 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~----------~~~---~~~~~A~~lgIP~i~~~~ 139 (478)
.+...-.+..++.+.+||+||+.. +.+ .|..-|...|||.|.++.
T Consensus 76 --------aDcv~~al~~~~~~~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~ 133 (196)
T PF01975_consen 76 --------ADCVKLALDGLLPDKKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSL 133 (196)
T ss_dssp --------HHHHHHHHHCTSTTSS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEE
T ss_pred --------HHHHHHHHHhhhccCCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEec
Confidence 122333555666666799999763 122 345567788999999866
No 145
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=95.23 E-value=1.4 Score=40.64 Aligned_cols=93 Identities=23% Similarity=0.171 Sum_probs=55.5
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChh
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYD 86 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~ 86 (478)
|||+++..-+.| ..||+.|.++|+ |++-+..++........ .+..... . ..+.
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~~g~-v~~sv~t~~g~~~~~~~---~~~~~v~-~---------------G~lg-- 53 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAEAGY-VIVSVATSYGGELLKPE---LPGLEVR-V---------------GRLG-- 53 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHhcCC-EEEEEEhhhhHhhhccc---cCCceEE-E---------------CCCC--
Confidence 788887666555 579999999999 66555544443332110 0001111 0 0110
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcC--Ccc----cHHHHHHHhCCCeEEE
Q 011765 87 EVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDF--AAY----WLPARARELGIPSGFF 137 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~--~~~----~~~~~A~~lgIP~i~~ 137 (478)
-.+.|.+++++.++|+||-=. |.. -+..+|+.+|||++.+
T Consensus 54 -----------~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~ 99 (249)
T PF02571_consen 54 -----------DEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRF 99 (249)
T ss_pred -----------CHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEE
Confidence 123677778888999988332 211 2456789999999987
No 146
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=95.19 E-value=2.4 Score=38.62 Aligned_cols=77 Identities=18% Similarity=0.240 Sum_probs=44.9
Q ss_pred HHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEE-----eccCChhhhhcCCCceeeeecc-ChhhHHH
Q 011765 298 IALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVY-----TSWAPQLAILAHDSVGGFLTHA-GWSSVVE 371 (478)
Q Consensus 298 ~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~-----~~~vpq~~vL~~~~~~~~ItHg-G~~s~~e 371 (478)
+.+.+++.+-.|+..++.... ..+-.-+.........++ +++=|..+.|+.++. +|.-. ..|-..|
T Consensus 189 l~k~l~~~g~~~lisfSRRTp------~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Ady--ii~TaDSinM~sE 260 (329)
T COG3660 189 LVKILENQGGSFLISFSRRTP------DTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADY--IISTADSINMCSE 260 (329)
T ss_pred HHHHHHhCCceEEEEeecCCc------HHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcce--EEEecchhhhhHH
Confidence 334456677788877765421 111111111122222222 134588899988877 65544 5588999
Q ss_pred HHHhCCcEecc
Q 011765 372 ALQFGMPLIVL 382 (478)
Q Consensus 372 al~~GvP~l~~ 382 (478)
|.+.|+|+.++
T Consensus 261 AasTgkPv~~~ 271 (329)
T COG3660 261 AASTGKPVFIL 271 (329)
T ss_pred HhccCCCeEEE
Confidence 99999999664
No 147
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=95.05 E-value=0.24 Score=42.37 Aligned_cols=100 Identities=15% Similarity=0.076 Sum_probs=51.9
Q ss_pred ccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChhHHHHHHHHHh
Q 011765 17 FGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYDEVKYLKQSFD 96 (478)
Q Consensus 17 ~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 96 (478)
.|--.-+..|+++|+++||+|++++.......... ...... ....... ... ... .
T Consensus 12 GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~---------~~~~~~----~~~~~~~----~~~-------~~~-~ 66 (177)
T PF13439_consen 12 GGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEE---------LVKIFV----KIPYPIR----KRF-------LRS-F 66 (177)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SST---------EEEE-------TT-SST----SS---------HH-H
T ss_pred ChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhh---------ccceee----eeecccc----ccc-------chh-H
Confidence 36667799999999999999999987765443322 111111 0000000 000 000 1
Q ss_pred hhhHHHHHHHhhcCCCEEEEcCCcc-cHHHHHHHhCCCeEEEecchH
Q 011765 97 CLEEPMAKLLQSLAPDWLLFDFAAY-WLPARARELGIPSGFFSIFTA 142 (478)
Q Consensus 97 ~~~~~l~~ll~~~~pD~vI~D~~~~-~~~~~A~~lgIP~i~~~~~~~ 142 (478)
.....+.+++++.+||+|-...... +....+.. ++|.+.......
T Consensus 67 ~~~~~~~~~i~~~~~DiVh~~~~~~~~~~~~~~~-~~~~v~~~H~~~ 112 (177)
T PF13439_consen 67 FFMRRLRRLIKKEKPDIVHIHGPPAFWIALLACR-KVPIVYTIHGPY 112 (177)
T ss_dssp HHHHHHHHHHHHHT-SEEECCTTHCCCHHHHHHH-CSCEEEEE-HHH
T ss_pred HHHHHHHHHHHHcCCCeEEecccchhHHHHHhcc-CCCEEEEeCCCc
Confidence 1123566677777999995544332 23333333 999998876554
No 148
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=95.03 E-value=2.1 Score=43.58 Aligned_cols=101 Identities=14% Similarity=0.145 Sum_probs=60.6
Q ss_pred EeccCChhh---hhcCCCceeee---eccCh-hhHHHHHHhCCc----Eecccccc--chhhHHHHHhhcCeEEEeeccC
Q 011765 342 YTSWAPQLA---ILAHDSVGGFL---THAGW-SSVVEALQFGMP----LIVLTCYA--DQGLNAKLLEEKQIVELIPRDE 408 (478)
Q Consensus 342 ~~~~vpq~~---vL~~~~~~~~I---tHgG~-~s~~eal~~GvP----~l~~P~~~--DQ~~na~~v~~~g~G~~l~~~~ 408 (478)
+..++++.+ +++.+++ || .+-|+ .++.||+++|+| +|+.-+.+ ++ ..-|..++..
T Consensus 345 ~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~---------~~~g~lv~p~- 412 (460)
T cd03788 345 LYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE---------LSGALLVNPY- 412 (460)
T ss_pred EeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccccchhh---------cCCCEEECCC-
Confidence 345677755 4667777 66 34565 578999999999 55443322 22 1235666653
Q ss_pred CCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHH
Q 011765 409 GDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNY 461 (478)
Q Consensus 409 ~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~ 461 (478)
+.++++++|.++++.. .++.+++.++..+.+. .-....-++.+++.
T Consensus 413 -----d~~~la~ai~~~l~~~-~~e~~~~~~~~~~~v~-~~~~~~w~~~~l~~ 458 (460)
T cd03788 413 -----DIDEVADAIHRALTMP-LEERRERHRKLREYVR-THDVQAWANSFLDD 458 (460)
T ss_pred -----CHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHH-hCCHHHHHHHHHHh
Confidence 7899999999999831 1344444455555543 34444444555443
No 149
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=94.88 E-value=1.2 Score=43.23 Aligned_cols=106 Identities=16% Similarity=0.029 Sum_probs=72.5
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQK--GHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDL 83 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~ 83 (478)
+||||++-....|++.=.+.+.+.|+++ +.++++++.+.+.+..... +.++-+.+ ...... +
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~-----p~I~~vi~---------~~~~~~-~- 64 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLN-----PEIDKVII---------IDKKKK-G- 64 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcC-----hHhhhhcc---------cccccc-c-
Confidence 5899999999999999999999999998 5999999999988766543 21221111 000000 0
Q ss_pred ChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEE
Q 011765 84 PYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFF 137 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~ 137 (478)
.. -.-...+...+++.++|+||.=.-.+-...++..+++|.-.-
T Consensus 65 ---------~~-~~~~~~l~~~lr~~~yD~vidl~~~~ksa~l~~~~~~~~r~g 108 (334)
T COG0859 65 ---------LG-LKERLALLRTLRKERYDAVIDLQGLLKSALLALLLGIPFRIG 108 (334)
T ss_pred ---------cc-hHHHHHHHHHhhccCCCEEEECcccHHHHHHHHHhCCCcccc
Confidence 00 011224555667779999998766666777777888887754
No 150
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=94.84 E-value=1.6 Score=40.96 Aligned_cols=102 Identities=11% Similarity=0.090 Sum_probs=65.0
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCccccCCCCCCCCCCCeEE-EEecCCCCCCCCCCccccCCCC
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQK--GHKIFFISTPRNIDRLPRLPQNLASMIQF-VKISLPHVDNLRENAEATIDLP 84 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~g~~~~~~i~~-~~i~~~~~~~l~~~~~~~~~~~ 84 (478)
|||++-..+.|++.-+..+.++|+++ +-+|++++.+...+.++.. +.++- ..++ .. +..
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~-----p~id~v~~~~----~~---------~~~ 62 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELM-----PEVDRVIVLP----KK---------HGK 62 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcC-----CccCEEEEcC----Cc---------ccc
Confidence 68999999999999999999999997 4899999999887766543 22321 2221 00 000
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEE
Q 011765 85 YDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGF 136 (478)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~ 136 (478)
.. + ... ..+...++..++|++|.-........++...+++...
T Consensus 63 ~~-~-------~~~-~~~~~~l~~~~~D~vi~~~~~~~~~~~~~~~~~~~~~ 105 (279)
T cd03789 63 LG-L-------GAR-RRLARALRRRRYDLAIDLQGSLRSALLPFLAGAPRRI 105 (279)
T ss_pred cc-h-------HHH-HHHHHHHhhcCCCEEEECCCccHHHHHHHHhCCCeEE
Confidence 00 0 011 1333345566999999776555445556666666543
No 151
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=94.62 E-value=0.58 Score=40.22 Aligned_cols=94 Identities=11% Similarity=0.045 Sum_probs=54.2
Q ss_pred hCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChhHHHHHHHHHhhhhHHHHHHHh-hcC
Q 011765 32 QKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYDEVKYLKQSFDCLEEPMAKLLQ-SLA 110 (478)
Q Consensus 32 ~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~~~ 110 (478)
++||+|++++........ .| ++...+..+... ..........++.-..........+.+|.+ ...
T Consensus 1 q~gh~v~fl~~~~~~~~~--~G------V~~~~y~~~~~~------~~~~~~~~~~~e~~~~rg~av~~a~~~L~~~Gf~ 66 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP--PG------VRVVRYRPPRGP------TPGTHPYVRDFEAAVLRGQAVARAARQLRAQGFV 66 (171)
T ss_pred CCCCEEEEEecCCCCCCC--CC------cEEEEeCCCCCC------CCCCCcccccHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 579999999955554432 34 777777521110 000010111122222223334445555543 357
Q ss_pred CCEEEEcCCcccHHHHHHHh-CCCeEEEec
Q 011765 111 PDWLLFDFAAYWLPARAREL-GIPSGFFSI 139 (478)
Q Consensus 111 pD~vI~D~~~~~~~~~A~~l-gIP~i~~~~ 139 (478)
||+||...-...++.+-..+ +.|.+.+.-
T Consensus 67 PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 67 PDVIIAHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred CCEEEEcCCcchhhhHHHhCCCCcEEEEEE
Confidence 89999997766777888888 899998744
No 152
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=94.19 E-value=3.7 Score=41.30 Aligned_cols=140 Identities=6% Similarity=0.096 Sum_probs=84.5
Q ss_pred CceEEEEeCcccCCCHHHHHHHHHHHHh-CCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEe-ccCC-h-hhhh
Q 011765 277 GSVVYVAFGSEAKPSQEELTEIALGLEL-SKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYT-SWAP-Q-LAIL 352 (478)
Q Consensus 277 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~-~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~-~~vp-q-~~vL 352 (478)
+.+++++ +...++.+....++ ++..|-+..... ..+.+.+-.+.+|++.. .+.+ + .+++
T Consensus 283 ~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te----------~s~kL~~L~~y~nvvly~~~~~~~l~~ly 345 (438)
T TIGR02919 283 KQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTE----------MSSKLMSLDKYDNVKLYPNITTQKIQELY 345 (438)
T ss_pred ccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCc----------ccHHHHHHHhcCCcEEECCcChHHHHHHH
Confidence 4477766 25555556655554 445555532211 11222221223566554 4566 3 6689
Q ss_pred cCCCceeeeeccC--hhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccc
Q 011765 353 AHDSVGGFLTHAG--WSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEK 430 (478)
Q Consensus 353 ~~~~~~~~ItHgG--~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~ 430 (478)
..|++-+-|+||. ..++.||+.+|+|++..-..... ...+.. |...+.. +.+++.++|.++|.
T Consensus 346 ~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~---~~~i~~---g~l~~~~------~~~~m~~~i~~lL~--- 410 (438)
T TIGR02919 346 QTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHN---RDFIAS---ENIFEHN------EVDQLISKLKDLLN--- 410 (438)
T ss_pred HhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCC---cccccC---CceecCC------CHHHHHHHHHHHhc---
Confidence 9999988899976 48999999999999996543221 122222 4444443 78999999999999
Q ss_pred hHHHHHHHHHHHHHhccc
Q 011765 431 GQIYRDKAKEMKGLFGDK 448 (478)
Q Consensus 431 ~~~~~~~a~~~~~~~~~~ 448 (478)
+++..+.+...++..++.
T Consensus 411 d~~~~~~~~~~q~~~a~~ 428 (438)
T TIGR02919 411 DPNQFRELLEQQREHAND 428 (438)
T ss_pred CHHHHHHHHHHHHHHhcc
Confidence 665444444444444443
No 153
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=93.92 E-value=0.61 Score=35.41 Aligned_cols=81 Identities=14% Similarity=0.143 Sum_probs=51.0
Q ss_pred ccChhhHHHHHHhCCcEeccccccchhhHHHHHhhcC-eEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHH
Q 011765 363 HAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQ-IVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEM 441 (478)
Q Consensus 363 HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g-~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~ 441 (478)
+|-...+.|++++|+|+|+-+. ......+ ..| -++.. + +.+++.++|..+++ |+..++++.+-
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~-~~~~~~~~~---~-----~~~el~~~i~~ll~---~~~~~~~ia~~ 72 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIF-EDGEHIITY---N-----DPEELAEKIEYLLE---NPEERRRIAKN 72 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHc-CCCCeEEEE---C-----CHHHHHHHHHHHHC---CHHHHHHHHHH
Confidence 4555789999999999999654 2222222 222 23332 2 78999999999999 66665555544
Q ss_pred H-HHhcccCChHHHHHHHH
Q 011765 442 K-GLFGDKGRHDRYVDNFL 459 (478)
Q Consensus 442 ~-~~~~~~~~~~~~~~~i~ 459 (478)
+ +.+.+.-.....++.|+
T Consensus 73 a~~~v~~~~t~~~~~~~il 91 (92)
T PF13524_consen 73 ARERVLKRHTWEHRAEQIL 91 (92)
T ss_pred HHHHHHHhCCHHHHHHHHH
Confidence 4 44444554455555554
No 154
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.89 E-value=0.32 Score=40.87 Aligned_cols=56 Identities=20% Similarity=0.220 Sum_probs=48.1
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEec
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKIS 66 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~ 66 (478)
..|||++...|+.|-..-++.+++.|.++|+.|-=+-+++.++--...| ++.+++.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~G------F~Ivdl~ 59 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIG------FKIVDLA 59 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEee------eEEEEcc
Confidence 4799999999999999999999999999999999777777766666666 7777774
No 155
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=93.53 E-value=5.3 Score=37.79 Aligned_cols=88 Identities=22% Similarity=0.349 Sum_probs=55.7
Q ss_pred CcEEEeccCCh---hhhhcCCCceeeeec---cChh-hHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCC
Q 011765 338 RGVVYTSWAPQ---LAILAHDSVGGFLTH---AGWS-SVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGD 410 (478)
Q Consensus 338 ~n~~~~~~vpq---~~vL~~~~~~~~ItH---gG~~-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~ 410 (478)
+++.+..++++ ..++..+++ ++.- .|.| ++.||+++|+|+|... .......+...+.|. +...
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~----~~~~~e~~~~~~~g~-~~~~--- 326 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASD----VGGIPEVVEDGETGL-LVPP--- 326 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECC----CCChHHHhcCCCceE-ecCC---
Confidence 56777788883 335666666 5544 3543 4699999999997744 443333444433566 4332
Q ss_pred CcccHHHHHHHHHHHhcccchHHHHHHHHH
Q 011765 411 GFFTRNSVAESLRLVLVEEKGQIYRDKAKE 440 (478)
Q Consensus 411 ~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~ 440 (478)
-+.+++..++..+++ +.+.++....
T Consensus 327 --~~~~~~~~~i~~~~~---~~~~~~~~~~ 351 (381)
T COG0438 327 --GDVEELADALEQLLE---DPELREELGE 351 (381)
T ss_pred --CCHHHHHHHHHHHhc---CHHHHHHHHH
Confidence 257999999999999 5544444443
No 156
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=93.17 E-value=0.7 Score=47.61 Aligned_cols=87 Identities=10% Similarity=0.172 Sum_probs=57.9
Q ss_pred CcEEEeccCC--h-hhhhcCCCceeeeecc---ChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCC
Q 011765 338 RGVVYTSWAP--Q-LAILAHDSVGGFLTHA---GWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDG 411 (478)
Q Consensus 338 ~n~~~~~~vp--q-~~vL~~~~~~~~ItHg---G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~ 411 (478)
..+.+..+.+ + ..++..+.+ +|.=+ |.++..||+.+|+|+| .......|+...=|..+ .
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~~NG~li---~--- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHNKNGYII---D--- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcCCCcEEe---C---
Confidence 3677777777 3 446666666 88544 7789999999999999 22233334444445555 2
Q ss_pred cccHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Q 011765 412 FFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGL 444 (478)
Q Consensus 412 ~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~ 444 (478)
+..+|.++|..+|. +..-.+++..-+-.
T Consensus 474 --d~~~l~~al~~~L~---~~~~wn~~~~~sy~ 501 (519)
T TIGR03713 474 --DISELLKALDYYLD---NLKNWNYSLAYSIK 501 (519)
T ss_pred --CHHHHHHHHHHHHh---CHHHHHHHHHHHHH
Confidence 78999999999999 55444444443333
No 157
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=92.99 E-value=0.94 Score=41.29 Aligned_cols=112 Identities=20% Similarity=0.216 Sum_probs=63.9
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChh
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYD 86 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~ 86 (478)
||||+.-==+ =|---+..|+++|. .+++|+++.+...+.-+...- .+...+....+. .........+
T Consensus 1 mrILlTNDDG-i~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~sl-Tl~~Plr~~~~~--------~~~~av~GTP-- 67 (252)
T COG0496 1 MRILLTNDDG-IHAPGIRALARALR-EGADVTVVAPDREQSGASHSL-TLHEPLRVRQVD--------NGAYAVNGTP-- 67 (252)
T ss_pred CeEEEecCCc-cCCHHHHHHHHHHh-hCCCEEEEccCCCCccccccc-ccccCceeeEec--------cceEEecCCh--
Confidence 5666543222 13333677888888 999999999998766443211 111122222221 1111011111
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcC----------Ccc---cHHHHHHHhCCCeEEEec
Q 011765 87 EVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDF----------AAY---WLPARARELGIPSGFFSI 139 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~----------~~~---~~~~~A~~lgIP~i~~~~ 139 (478)
.+...-.+..++++.+||+||+.. ..+ .|++=|..+|||.|.++.
T Consensus 68 --------aDCV~lal~~l~~~~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~ 125 (252)
T COG0496 68 --------ADCVILGLNELLKEPRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISL 125 (252)
T ss_pred --------HHHHHHHHHHhccCCCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeee
Confidence 133444677788788899999763 222 345557889999999865
No 158
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=92.77 E-value=1.1 Score=41.52 Aligned_cols=91 Identities=19% Similarity=0.174 Sum_probs=56.6
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccc-cCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCCh
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNID-RLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPY 85 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~-~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~ 85 (478)
|||+++..-+. -..|++.|.++||+|+..+...... .....+ ...++ . +. +
T Consensus 1 m~ILvlGGT~e-----gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g-----~~~v~-~-----g~----------l-- 52 (256)
T TIGR00715 1 MTVLLMGGTVD-----SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQ-----ALTVH-T-----GA----------L-- 52 (256)
T ss_pred CeEEEEechHH-----HHHHHHHHHhCCCeEEEEEccCCccccccccC-----CceEE-E-----CC----------C--
Confidence 57776643332 6789999999999999888776543 222221 01111 1 00 0
Q ss_pred hHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcc------cHHHHHHHhCCCeEEE
Q 011765 86 DEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAY------WLPARARELGIPSGFF 137 (478)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~------~~~~~A~~lgIP~i~~ 137 (478)
-...+.+++++.++|+||--..-+ -+..+++.+|||++.+
T Consensus 53 ------------~~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 53 ------------DPQELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred ------------CHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 012466777888999887553322 2356789999999988
No 159
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=92.34 E-value=2 Score=35.96 Aligned_cols=138 Identities=16% Similarity=0.152 Sum_probs=71.2
Q ss_pred eEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCce
Q 011765 279 VVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVG 358 (478)
Q Consensus 279 ~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~ 358 (478)
.|.|-+||.+ +....+++...|++.+..+-..+. ..-..|+.+. +|+...+- ..+++
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~--------saHR~p~~l~-----------~~~~~~~~-~~~~v- 58 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVA--------SAHRTPERLL-----------EFVKEYEA-RGADV- 58 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE----------TTTSHHHHH-----------HHHHHTTT-TTESE-
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEE--------eccCCHHHHH-----------HHHHHhcc-CCCEE-
Confidence 4566677766 788888999999998876544332 1223444222 22222111 22344
Q ss_pred eeeeccChhh----HHHHHHhCCcEeccccccchh---hHHHHHhhc--CeEEEeeccCCCCcccHHHHHHHHHHHhccc
Q 011765 359 GFLTHAGWSS----VVEALQFGMPLIVLTCYADQG---LNAKLLEEK--QIVELIPRDEGDGFFTRNSVAESLRLVLVEE 429 (478)
Q Consensus 359 ~~ItHgG~~s----~~eal~~GvP~l~~P~~~DQ~---~na~~v~~~--g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~ 429 (478)
||+=+|... +.-++. -.|+|.+|....+. +--.-+.++ |+++..-.-+ +-.++..++..|-.+ .
T Consensus 59 -iIa~AG~~a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~--~~~nAA~~A~~ILa~-~-- 131 (150)
T PF00731_consen 59 -IIAVAGMSAALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGIN--NGFNAALLAARILAL-K-- 131 (150)
T ss_dssp -EEEEEESS--HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SST--HHHHHHHHHHHHHHT-T--
T ss_pred -EEEECCCcccchhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEEEcc--CchHHHHHHHHHHhc-C--
Confidence 888777643 333333 67999999876543 222223333 7766553311 003444444444222 3
Q ss_pred chHHHHHHHHHHHHHhcc
Q 011765 430 KGQIYRDKAKEMKGLFGD 447 (478)
Q Consensus 430 ~~~~~~~~a~~~~~~~~~ 447 (478)
|++++++.+..++..++
T Consensus 132 -d~~l~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 132 -DPELREKLRAYREKMKE 148 (150)
T ss_dssp --HHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHc
Confidence 68899999988887653
No 160
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.74 E-value=1.5 Score=40.74 Aligned_cols=105 Identities=14% Similarity=0.024 Sum_probs=64.7
Q ss_pred cCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhh--HHHHHhhc-CeEEEeeccCCCCcccHHHHHHH
Q 011765 345 WAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGL--NAKLLEEK-QIVELIPRDEGDGFFTRNSVAES 421 (478)
Q Consensus 345 ~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~--na~~v~~~-g~G~~l~~~~~~~~~~~~~l~~~ 421 (478)
|-...++|.++++ .|--+|- .+-+++-.|+|+|.+|-.+-|+. -|.+=.++ |+.+.+-.. .+..-...
T Consensus 302 qqsfadiLH~ada--algmAGT-AtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~------~aq~a~~~ 372 (412)
T COG4370 302 QQSFADILHAADA--ALGMAGT-ATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRP------EAQAAAQA 372 (412)
T ss_pred HHHHHHHHHHHHH--HHHhccc-hHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCC------chhhHHHH
Confidence 3344667766666 4433322 23456889999999999998854 45554444 888877653 34444445
Q ss_pred HHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHh
Q 011765 422 LRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLKN 464 (478)
Q Consensus 422 i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~ 464 (478)
.+++|. |+++...+++-.++--.++| ++..|.+.+++
T Consensus 373 ~q~ll~---dp~r~~air~nGqrRiGqaG---aa~rIAe~l~e 409 (412)
T COG4370 373 VQELLG---DPQRLTAIRHNGQRRIGQAG---AARRIAEELGE 409 (412)
T ss_pred HHHHhc---ChHHHHHHHhcchhhccCcc---hHHHHHHHHHH
Confidence 556999 89999888865554333333 44445444443
No 161
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=91.24 E-value=2.3 Score=43.19 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=68.7
Q ss_pred eccCChhh---hhcCCCceeeee---ccCh-hhHHHHHHhCCc----EeccccccchhhHHHHHhhcCeEEEeeccCCCC
Q 011765 343 TSWAPQLA---ILAHDSVGGFLT---HAGW-SSVVEALQFGMP----LIVLTCYADQGLNAKLLEEKQIVELIPRDEGDG 411 (478)
Q Consensus 343 ~~~vpq~~---vL~~~~~~~~It---HgG~-~s~~eal~~GvP----~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~ 411 (478)
...+++.+ +++.+++ ||. +=|+ .++.||+++|+| +|+--+.+- +..+ +-|..++..
T Consensus 341 ~~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~----~~~l---~~gllVnP~---- 407 (456)
T TIGR02400 341 NRSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGA----AQEL---NGALLVNPY---- 407 (456)
T ss_pred cCCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCC----hHHh---CCcEEECCC----
Confidence 34566655 4566777 664 4465 588999999999 776555432 2222 236666654
Q ss_pred cccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHH
Q 011765 412 FFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYL 462 (478)
Q Consensus 412 ~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~ 462 (478)
+.+.++++|.++|+.. .++.+++.+++.+.+.. .....-++.+++.+
T Consensus 408 --d~~~lA~aI~~aL~~~-~~er~~r~~~~~~~v~~-~~~~~W~~~~l~~l 454 (456)
T TIGR02400 408 --DIDGMADAIARALTMP-LEEREERHRAMMDKLRK-NDVQRWREDFLSDL 454 (456)
T ss_pred --CHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHh
Confidence 7899999999999832 35677777778887654 45556666666655
No 162
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=91.19 E-value=1.1 Score=38.75 Aligned_cols=115 Identities=12% Similarity=0.152 Sum_probs=60.3
Q ss_pred ecCCCccCHHHHHHHHHHH-HhC-CCeEEEEeCCCccccC--CCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChhH
Q 011765 12 FPWLAFGHMIPWLELAKLI-AQK-GHKIFFISTPRNIDRL--PRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYDE 87 (478)
Q Consensus 12 ~~~~~~gH~~p~l~La~~L-~~r-Gh~Vt~~~~~~~~~~~--~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~~ 87 (478)
+-.++-||+.-|+.|.+.+ .++ .++..+++........ .+.........++..+| . . . ......
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~~~~~~~~~~----r----~-r---~v~q~~ 70 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSSKRHKILEIP----R----A-R---EVGQSY 70 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhccccceeeccc----e----E-E---Eechhh
Confidence 3456779999999999999 333 4666666655543321 11110000111233332 1 0 0 111111
Q ss_pred HHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcc--cHHHHHHHh------CCCeEEEec
Q 011765 88 VKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAY--WLPARAREL------GIPSGFFSI 139 (478)
Q Consensus 88 ~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~--~~~~~A~~l------gIP~i~~~~ 139 (478)
..........+. ....++.+.+||+||+..-.. +.+.+|..+ |.+.|.+=+
T Consensus 71 ~~~~~~~l~~~~-~~~~il~r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES 129 (170)
T PF08660_consen 71 LTSIFTTLRAFL-QSLRILRRERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIES 129 (170)
T ss_pred HhhHHHHHHHHH-HHHHHHHHhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEe
Confidence 112222222222 223344677899999996444 456788888 999998733
No 163
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=90.55 E-value=6 Score=36.43 Aligned_cols=116 Identities=15% Similarity=0.161 Sum_probs=58.6
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChh
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYD 86 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~ 86 (478)
||||+.-==+. |---+..|+++|++ +|+|+++.+...+.-... .-.....+....+.. ++...........+
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~Sg~g~-sit~~~pl~~~~~~~---~~~~~~~~~v~GTP-- 72 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRSASSH-SITIYEPIIIKEVKL---EGINSKAYSISGTP-- 72 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCccccc-cccCCCCeEEEeecc---CCCCccEEEECCcH--
Confidence 67777632222 11227888999975 689999988877653222 111112233333311 00000000001111
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcC----------Ccc---cHHHHHHHhCCCeEEEec
Q 011765 87 EVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDF----------AAY---WLPARARELGIPSGFFSI 139 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~----------~~~---~~~~~A~~lgIP~i~~~~ 139 (478)
.+...-.+..++ ..+||+||+.. +.+ .|++-|..+|||.|.++.
T Consensus 73 --------aDcV~lal~~l~-~~~pDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPsiA~S~ 129 (253)
T PRK13933 73 --------ADCVRVALDKLV-PDNIDMVISGINKGLNIGNDILYSGTVSAAIEGAIYKVPSIAVSA 129 (253)
T ss_pred --------HHHHHHHHHHhc-CCCCCEEEECCcCCCCCCcCCccchhHHHHHHHHHcCCCeEEEEe
Confidence 111222334444 35799999763 222 345667888999999865
No 164
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=90.40 E-value=9.2 Score=35.30 Aligned_cols=118 Identities=15% Similarity=0.179 Sum_probs=63.4
Q ss_pred CCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCC
Q 011765 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDL 83 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~ 83 (478)
..+||||+.-==+.- ---+..|+++|.+.| +|+++.+...+.-....- .....+++..+... .... . ......
T Consensus 3 ~~~M~ILltNDDGi~-a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ai-t~~~pl~~~~~~~~--~~~~-~-y~v~GT 75 (257)
T PRK13932 3 DKKPHILVCNDDGIE-GEGIHVLAASMKKIG-RVTVVAPAEPHSGMSHAM-TLGVPLRIKEYQKN--NRFF-G-YTVSGT 75 (257)
T ss_pred CCCCEEEEECCCCCC-CHHHHHHHHHHHhCC-CEEEEcCCCCCCCCcccc-cCCCCeEEEEEccC--CCce-E-EEEcCc
Confidence 457999987543331 134778899998888 799888887655332211 12233444443210 0000 0 000111
Q ss_pred ChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcC----------Cc---ccHHHHHHHhCCCeEEEec
Q 011765 84 PYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDF----------AA---YWLPARARELGIPSGFFSI 139 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~----------~~---~~~~~~A~~lgIP~i~~~~ 139 (478)
+ .+...-.+..++ ..+||+||+.. +. ..|.+-|..+|||.|.++.
T Consensus 76 P----------aDCV~lal~~~~-~~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 76 P----------VDCIKVALSHIL-PEKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSL 133 (257)
T ss_pred H----------HHHHHHHHHhhc-CCCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEc
Confidence 1 111222344444 35799999764 11 1345667888999999865
No 165
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=88.40 E-value=0.24 Score=42.79 Aligned_cols=44 Identities=16% Similarity=0.165 Sum_probs=29.9
Q ss_pred hhhhHHHHHHHhhcCCCEEEEcCCcccHH-H--H--HHHh-CCCeEEEec
Q 011765 96 DCLEEPMAKLLQSLAPDWLLFDFAAYWLP-A--R--AREL-GIPSGFFSI 139 (478)
Q Consensus 96 ~~~~~~l~~ll~~~~pD~vI~D~~~~~~~-~--~--A~~l-gIP~i~~~~ 139 (478)
....+.+.+++++.+||+||+.......+ + + ...+ ++|++.+.+
T Consensus 75 ~~~~~~l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 75 RLFARRLIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHHHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 33566889999999999999997654333 1 1 2223 578877655
No 166
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=88.28 E-value=0.78 Score=36.78 Aligned_cols=41 Identities=15% Similarity=0.075 Sum_probs=29.8
Q ss_pred cEEEEecCCCcc---CHHHHHHHHHHHHhCCCeEEEEeCCCccc
Q 011765 7 LQIAMFPWLAFG---HMIPWLELAKLIAQKGHKIFFISTPRNID 47 (478)
Q Consensus 7 ~~il~~~~~~~g---H~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 47 (478)
|||+|+.-|-.+ .-.-++.|+.+-++|||+|.++......-
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL~~ 44 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDLSL 44 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGEEE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcEEE
Confidence 789888777554 45678999999999999999999887653
No 167
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=86.51 E-value=4.3 Score=37.37 Aligned_cols=92 Identities=21% Similarity=0.136 Sum_probs=58.3
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCCh
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPY 85 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~ 85 (478)
+++|+++..-+.| ..||+.|.++|+.|++.+...+.. ....+ .....- .+.
T Consensus 2 ~~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~~g~-~~~~~------~~v~~G----------------~l~- 52 (248)
T PRK08057 2 MPRILLLGGTSEA-----RALARALAAAGVDIVLSLAGRTGG-PADLP------GPVRVG----------------GFG- 52 (248)
T ss_pred CceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccCCCC-cccCC------ceEEEC----------------CCC-
Confidence 4678887666555 478999999999998877666544 11111 221110 110
Q ss_pred hHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCccc-------HHHHHHHhCCCeEEEec
Q 011765 86 DEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYW-------LPARARELGIPSGFFSI 139 (478)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~-------~~~~A~~lgIP~i~~~~ 139 (478)
-.+.|.+++++.++++||-= ..++ +..+|+.+|||++.+.-
T Consensus 53 ------------~~~~l~~~l~~~~i~~VIDA-THPfA~~is~~a~~ac~~~~ipyiR~eR 100 (248)
T PRK08057 53 ------------GAEGLAAYLREEGIDLVIDA-THPYAAQISANAAAACRALGIPYLRLER 100 (248)
T ss_pred ------------CHHHHHHHHHHCCCCEEEEC-CCccHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 12366777788899997733 2232 34678999999999843
No 168
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=85.59 E-value=27 Score=33.57 Aligned_cols=82 Identities=24% Similarity=0.289 Sum_probs=65.0
Q ss_pred CcEE-EeccCCh---hhhhcCCCceeeeec--cChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCC
Q 011765 338 RGVV-YTSWAPQ---LAILAHDSVGGFLTH--AGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDG 411 (478)
Q Consensus 338 ~n~~-~~~~vpq---~~vL~~~~~~~~ItH--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~ 411 (478)
+++. +.+++|. .++|+.|+++.|.+. =|+|+++-.|+.|+|++. ..+-.--+-+++.|+-+....++
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L----~~~np~~~~l~~~~ipVlf~~d~--- 317 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFL----SRDNPFWQDLKEQGIPVLFYGDE--- 317 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEE----ecCChHHHHHHhCCCeEEecccc---
Confidence 4664 4568876 558899999777764 589999999999999988 55555666778889888877776
Q ss_pred cccHHHHHHHHHHHhc
Q 011765 412 FFTRNSVAESLRLVLV 427 (478)
Q Consensus 412 ~~~~~~l~~~i~~ll~ 427 (478)
++...++++=+++..
T Consensus 318 -L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 318 -LDEALVREAQRQLAN 332 (360)
T ss_pred -CCHHHHHHHHHHHhh
Confidence 999999988887776
No 169
>PRK06849 hypothetical protein; Provisional
Probab=85.09 E-value=3.1 Score=41.34 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=29.5
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRN 45 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~ 45 (478)
++|+||+..... .-.+.+|+.|.+.||+|+++.....
T Consensus 3 ~~~~VLI~G~~~----~~~l~iar~l~~~G~~Vi~~d~~~~ 39 (389)
T PRK06849 3 TKKTVLITGARA----PAALELARLFHNAGHTVILADSLKY 39 (389)
T ss_pred CCCEEEEeCCCc----HHHHHHHHHHHHCCCEEEEEeCCch
Confidence 578999985333 3589999999999999999877643
No 170
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=84.93 E-value=21 Score=32.92 Aligned_cols=111 Identities=18% Similarity=0.196 Sum_probs=60.1
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChh
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYD 86 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~ 86 (478)
||||+.-==+. |---+..|+++|.+. |+|+++.+...+.-+...- .....+++..+. +. .......+
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~g~ai-t~~~pl~~~~~~----~~----~~~v~GTP-- 67 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSGASHSL-TLTRPLRVEKVD----NG----FYAVDGTP-- 67 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcCCcccc-cCCCCeEEEEec----CC----eEEECCcH--
Confidence 56666533222 223378899999988 7999999888765443221 111224444331 11 00001111
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcC----------Ccc---cHHHHHHHhCCCeEEEec
Q 011765 87 EVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDF----------AAY---WLPARARELGIPSGFFSI 139 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~----------~~~---~~~~~A~~lgIP~i~~~~ 139 (478)
.+...-.+..++. .+||+||+.. +.+ .|+.-|..+|||.|.++.
T Consensus 68 --------aDcV~~gl~~l~~-~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 124 (250)
T PRK00346 68 --------TDCVHLALNGLLD-PKPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSL 124 (250)
T ss_pred --------HHHHHHHHHhhcc-CCCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEec
Confidence 1122223444443 4899999764 222 345567788999999865
No 171
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=84.50 E-value=22 Score=33.51 Aligned_cols=113 Identities=11% Similarity=0.026 Sum_probs=71.3
Q ss_pred CCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCC--CCC-------CCCCCeEEEEecCCCCCCCC
Q 011765 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPR--LPQ-------NLASMIQFVKISLPHVDNLR 74 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~--~g~-------~~~~~i~~~~i~~~~~~~l~ 74 (478)
++...|.+...|+-|-=.-.-.|++.|.++||+|-++.-++...+--. .|+ +..+++-+.++| ..
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~----sr-- 122 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSP----SR-- 122 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecC----CC--
Confidence 345688999999999999999999999999999999887766443211 111 123445555554 10
Q ss_pred CCccccCCCChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCccc--HHHHHHHhCCCeEEE
Q 011765 75 ENAEATIDLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYW--LPARARELGIPSGFF 137 (478)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~--~~~~A~~lgIP~i~~ 137 (478)
+. +..+ ..-......+++..++|+||.+..... =..++...++=.++.
T Consensus 123 -G~----------lGGl----S~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~ 172 (323)
T COG1703 123 -GT----------LGGL----SRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVM 172 (323)
T ss_pred -cc----------chhh----hHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcceEEEEe
Confidence 00 0011 122234556677889999999976553 345666666555544
No 172
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=84.50 E-value=24 Score=32.50 Aligned_cols=115 Identities=15% Similarity=0.156 Sum_probs=58.5
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChh
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYD 86 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~ 86 (478)
||||+..==+. |---+..|+++|++ +|+|+++.+...+.-+...- .....+.+..+... ++. ........+
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qSg~g~ai-t~~~pl~~~~~~~~--~~~--~~y~v~GTP-- 71 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERSATGHAI-TIRVPLWAKKVFIS--ERF--VAYATTGTP-- 71 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCccccccc-cCCCCceEEEeecC--CCc--cEEEECCcH--
Confidence 57777643333 22337788899965 68999999887765333211 11122333333200 000 000011111
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcC----------Ccc---cHHHHHHHhCCCeEEEec
Q 011765 87 EVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDF----------AAY---WLPARARELGIPSGFFSI 139 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~----------~~~---~~~~~A~~lgIP~i~~~~ 139 (478)
.+...-.+..++ ..+||+||+.. +.+ .|.+-|..+|||.|.++.
T Consensus 72 --------aDcV~lal~~~~-~~~pDLVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 128 (253)
T PRK13935 72 --------ADCVKLGYDVIM-DKKVDLVISGINRGPNLGTDVLYSGTVSGALEGAMMGVPSIAISS 128 (253)
T ss_pred --------HHHHHHHHHhhc-cCCCCEEEeCCccCCCCCcCCcccHhHHHHHHHHhcCCCeEEEEc
Confidence 111222333333 34799999763 222 344567788999999965
No 173
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=84.03 E-value=5.1 Score=38.39 Aligned_cols=44 Identities=20% Similarity=0.167 Sum_probs=34.7
Q ss_pred ccEEEEecC-CCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccC
Q 011765 6 KLQIAMFPW-LAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRL 49 (478)
Q Consensus 6 ~~~il~~~~-~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 49 (478)
++||+|++. ++.|-..-..++|-.|++.|.+|.++++++....-
T Consensus 1 ~~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~ 45 (322)
T COG0003 1 MTRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLG 45 (322)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchH
Confidence 357776654 56699999999999999999998888888765543
No 174
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=83.23 E-value=16 Score=40.04 Aligned_cols=105 Identities=13% Similarity=0.121 Sum_probs=67.0
Q ss_pred cCChh---hhhcCCCceeeee---ccChh-hHHHHHHhCCc---Eeccc-cccchhhHHHHHhhcC-eEEEeeccCCCCc
Q 011765 345 WAPQL---AILAHDSVGGFLT---HAGWS-SVVEALQFGMP---LIVLT-CYADQGLNAKLLEEKQ-IVELIPRDEGDGF 412 (478)
Q Consensus 345 ~vpq~---~vL~~~~~~~~It---HgG~~-s~~eal~~GvP---~l~~P-~~~DQ~~na~~v~~~g-~G~~l~~~~~~~~ 412 (478)
+++.. ++++.+++ ||. .-|+| +..|++++|+| +++++ +.+ .+.. +| -|+.++..
T Consensus 363 ~v~~~el~aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G----~~~~---l~~~allVnP~----- 428 (797)
T PLN03063 363 SVDFNYLCALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAG----AGQS---LGAGALLVNPW----- 428 (797)
T ss_pred CCCHHHHHHHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCcC----chhh---hcCCeEEECCC-----
Confidence 45553 45667777 663 45875 78899999999 44444 332 1111 23 46777764
Q ss_pred ccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHhcc
Q 011765 413 FTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLKNHR 466 (478)
Q Consensus 413 ~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 466 (478)
+.++++++|.++|+-. .++.+++.+++.+...... ...-++.+++.+....
T Consensus 429 -D~~~lA~AI~~aL~m~-~~er~~r~~~~~~~v~~~~-~~~Wa~~fl~~l~~~~ 479 (797)
T PLN03063 429 -NITEVSSAIKEALNMS-DEERETRHRHNFQYVKTHS-AQKWADDFMSELNDII 479 (797)
T ss_pred -CHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhhhhCC-HHHHHHHHHHHHHHHh
Confidence 8899999999999821 3455666777776664443 5566676777665443
No 175
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=82.87 E-value=11 Score=30.14 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=32.5
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
.|+++.+.+..-|-.-+..|+..|.++||+|.++...
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~ 37 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDAN 37 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCC
Confidence 3789999999999999999999999999999987433
No 176
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=82.86 E-value=2.6 Score=34.83 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=38.4
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccc
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNID 47 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 47 (478)
++.+|++.+.++.+|-.-..-++..|..+|++|+++......+
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e 44 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQE 44 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHH
Confidence 4679999999999999999999999999999999999765543
No 177
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=82.46 E-value=5.4 Score=41.21 Aligned_cols=77 Identities=9% Similarity=0.002 Sum_probs=46.6
Q ss_pred hhhhhcCCCceeeee---ccCh-hhHHHHHHhCCcEecccccc-chhhHHHHHhhc-CeEEEeeccCCCC-cccHHHHHH
Q 011765 348 QLAILAHDSVGGFLT---HAGW-SSVVEALQFGMPLIVLTCYA-DQGLNAKLLEEK-QIVELIPRDEGDG-FFTRNSVAE 420 (478)
Q Consensus 348 q~~vL~~~~~~~~It---HgG~-~s~~eal~~GvP~l~~P~~~-DQ~~na~~v~~~-g~G~~l~~~~~~~-~~~~~~l~~ 420 (478)
..+++..|++ +|. +=|+ -++.||+++|+|+|.....+ ..... ..+... ..|+.+...+... .-+.++|++
T Consensus 468 y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~-E~v~~~~~~gi~V~~r~~~~~~e~v~~La~ 544 (590)
T cd03793 468 YEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME-EHIEDPESYGIYIVDRRFKSPDESVQQLTQ 544 (590)
T ss_pred hHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH-HHhccCCCceEEEecCCccchHHHHHHHHH
Confidence 3566777777 664 4565 49999999999999977532 22111 112111 2577775322000 035677888
Q ss_pred HHHHHhc
Q 011765 421 SLRLVLV 427 (478)
Q Consensus 421 ~i~~ll~ 427 (478)
++.++++
T Consensus 545 ~m~~~~~ 551 (590)
T cd03793 545 YMYEFCQ 551 (590)
T ss_pred HHHHHhC
Confidence 8888886
No 178
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=82.11 E-value=4 Score=36.88 Aligned_cols=33 Identities=27% Similarity=0.247 Sum_probs=25.0
Q ss_pred CCEEE-EcCCcc-cHHHHHHHhCCCeEEEecchHH
Q 011765 111 PDWLL-FDFAAY-WLPARARELGIPSGFFSIFTAA 143 (478)
Q Consensus 111 pD~vI-~D~~~~-~~~~~A~~lgIP~i~~~~~~~~ 143 (478)
||+++ .|+..- -|+.=|.++|||+|.+..+++.
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~d 191 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNCD 191 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCCC
Confidence 99985 565332 4677799999999999776653
No 179
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=81.85 E-value=51 Score=31.73 Aligned_cols=128 Identities=13% Similarity=-0.069 Sum_probs=78.6
Q ss_pred CCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCC
Q 011765 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDL 83 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~ 83 (478)
+++.|+.++..+-.||--+|.-=|..|++.|.+|.+++.-......+-.. -++|+++.++. ++.- ...
T Consensus 10 ~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~---hprI~ih~m~~-----l~~~----~~~ 77 (444)
T KOG2941|consen 10 SKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLN---HPRIRIHGMPN-----LPFL----QGG 77 (444)
T ss_pred cccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhc---CCceEEEeCCC-----Cccc----CCC
Confidence 45789999999999999999999999999999999988655432211111 26799999973 2210 001
Q ss_pred ChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEc-CCcccHHHHH----HHhCCCeEEEecchHHH
Q 011765 84 PYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFD-FAAYWLPARA----RELGIPSGFFSIFTAAT 144 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D-~~~~~~~~~A----~~lgIP~i~~~~~~~~~ 144 (478)
+ .......+.+-+...-+-.++....+|.++.- +-+.+.+.++ ...|-.+++=|....++
T Consensus 78 p-~~~~l~lKvf~Qfl~Ll~aL~~~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 78 P-RVLFLPLKVFWQFLSLLWALFVLRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred c-hhhhhHHHHHHHHHHHHHHHHhccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 1 11112222222222233444445577988765 3444444544 44477888877765554
No 180
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=81.70 E-value=12 Score=34.88 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=33.6
Q ss_pred EEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEecccc
Q 011765 340 VVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTC 384 (478)
Q Consensus 340 ~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~ 384 (478)
+.+.+-++-.++|.+++. +||-. ...-.||+.+|+|++++..
T Consensus 185 ~~~~~~~~~~~Ll~~s~~--Vvtin-StvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 185 VIIDDDVNLYELLEQSDA--VVTIN-STVGLEALLHGKPVIVFGR 226 (269)
T ss_pred EEECCCCCHHHHHHhCCE--EEEEC-CHHHHHHHHcCCceEEecC
Confidence 445566788899999988 88875 4577999999999999763
No 181
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=81.52 E-value=36 Score=29.76 Aligned_cols=57 Identities=19% Similarity=0.124 Sum_probs=38.2
Q ss_pred cEEEEec---CCC-ccCHHH-HHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecC
Q 011765 7 LQIAMFP---WLA-FGHMIP-WLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISL 67 (478)
Q Consensus 7 ~~il~~~---~~~-~gH~~p-~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~ 67 (478)
.||.++. .|+ +|-+-- .-.|+..|+++||+||+++.....+...... .++++..+|.
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y----~gv~l~~i~~ 63 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFEY----NGVRLVYIPA 63 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCccc----CCeEEEEeCC
Confidence 3676663 344 466655 4578889999999999999876654333322 4578887763
No 182
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=81.52 E-value=32 Score=31.92 Aligned_cols=41 Identities=10% Similarity=0.037 Sum_probs=27.9
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRL 49 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 49 (478)
||||+.-==+. |---+..|+++|...| +|+++.+...+.-+
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqSg~ 41 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKSAT 41 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCccc
Confidence 56666543333 2244788999998887 79998888765433
No 183
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=80.41 E-value=7.2 Score=33.26 Aligned_cols=105 Identities=21% Similarity=0.273 Sum_probs=59.3
Q ss_pred EEEecCCCccCHHH----HHHHHHHHHhC-CCeEEEEeCCCccccC-------CCCCCCCCCCe-EEEEecCCCCCCCCC
Q 011765 9 IAMFPWLAFGHMIP----WLELAKLIAQK-GHKIFFISTPRNIDRL-------PRLPQNLASMI-QFVKISLPHVDNLRE 75 (478)
Q Consensus 9 il~~~~~~~gH~~p----~l~La~~L~~r-Gh~Vt~~~~~~~~~~~-------~~~g~~~~~~i-~~~~i~~~~~~~l~~ 75 (478)
|+++.-...|.+++ ++..|++|++. |.+|+.++.....+.. ...| + +.+.+.. +.+.
T Consensus 2 ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~G------~d~v~~~~~---~~~~- 71 (164)
T PF01012_consen 2 ILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKYG------ADKVYHIDD---PALA- 71 (164)
T ss_dssp EEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHSTT------ESEEEEEE----GGGT-
T ss_pred EEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhcC------CcEEEEecC---cccc-
Confidence 44444433555555 68889999985 8888877765322211 2234 3 2333321 0000
Q ss_pred CccccCCCChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcc---cHHHHHHHhCCCeEEEec
Q 011765 76 NAEATIDLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAY---WLPARARELGIPSGFFSI 139 (478)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~---~~~~~A~~lgIP~i~~~~ 139 (478)
..........+.+++++.+||+|+.-.... .+..+|.+||.|++.-..
T Consensus 72 ----------------~~~~~~~a~~l~~~~~~~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 72 ----------------EYDPEAYADALAELIKEEGPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp ----------------TC-HHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred ----------------ccCHHHHHHHHHHHHHhcCCCEEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 001133555777788889999999876444 356789999999997544
No 184
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=80.23 E-value=40 Score=31.98 Aligned_cols=82 Identities=22% Similarity=0.300 Sum_probs=56.8
Q ss_pred CcEE-EeccCCh---hhhhcCCCceeeeec--cChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCC
Q 011765 338 RGVV-YTSWAPQ---LAILAHDSVGGFLTH--AGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDG 411 (478)
Q Consensus 338 ~n~~-~~~~vpq---~~vL~~~~~~~~ItH--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~ 411 (478)
+++. ...++|. .++|+.++++.|+++ =|.||++-.++.|+|+++-. |-.-=+-+.+.|+-+..+.+.
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r----~n~fwqdl~e~gv~Vlf~~d~--- 278 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR----DNPFWQDLTEQGLPVLFTGDD--- 278 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec----CCchHHHHHhCCCeEEecCCc---
Confidence 4543 4567765 668999999888875 48999999999999999843 211112256678887766666
Q ss_pred cccHHHHHHHHHHHhc
Q 011765 412 FFTRNSVAESLRLVLV 427 (478)
Q Consensus 412 ~~~~~~l~~~i~~ll~ 427 (478)
++...+.++=+++..
T Consensus 279 -L~~~~v~e~~rql~~ 293 (322)
T PRK02797 279 -LDEDIVREAQRQLAS 293 (322)
T ss_pred -ccHHHHHHHHHHHHh
Confidence 777777665444443
No 185
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=80.04 E-value=27 Score=32.07 Aligned_cols=115 Identities=15% Similarity=0.170 Sum_probs=60.6
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChh
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYD 86 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~ 86 (478)
||||+.-==+. |---+..|+++|++.| +|+++.+...+.-+...- .....+++..++.. ++. ........+
T Consensus 1 M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ai-t~~~pl~~~~~~~~--~~~--~~~~v~GTP-- 71 (244)
T TIGR00087 1 MKILLTNDDGI-HSPGIRALYQALKELG-EVTVVAPARQRSGTGHSL-TLFEPLRVGQVKVK--NGA--HIYAVDGTP-- 71 (244)
T ss_pred CeEEEECCCCC-CCHhHHHHHHHHHhCC-CEEEEeCCCCccccccCc-CCCCCeEEEEeccC--CCc--cEEEEcCcH--
Confidence 56665532221 2233678899999988 899999888765443221 12233555444310 000 000001111
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcC----------Cc---ccHHHHHHHhCCCeEEEec
Q 011765 87 EVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDF----------AA---YWLPARARELGIPSGFFSI 139 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~----------~~---~~~~~~A~~lgIP~i~~~~ 139 (478)
.+...-.+..++ ..+||+||+.. +. ..|.+-|..+|||.|.++.
T Consensus 72 --------aDcv~~gl~~l~-~~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~ 128 (244)
T TIGR00087 72 --------TDCVILGINELM-PEVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISL 128 (244)
T ss_pred --------HHHHHHHHHHhc-cCCCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEe
Confidence 111222333343 34699999764 11 1345667888999999865
No 186
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=79.79 E-value=2.2 Score=36.83 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=27.0
Q ss_pred cEEEEecCCCc-cCHHHHHHHHHHHHhCCCeEEEEeCCCcc
Q 011765 7 LQIAMFPWLAF-GHMIPWLELAKLIAQKGHKIFFISTPRNI 46 (478)
Q Consensus 7 ~~il~~~~~~~-gH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (478)
|||.++.-.+. |+ .|+++..+|||+||-++-....
T Consensus 1 mKIaiIgAsG~~Gs-----~i~~EA~~RGHeVTAivRn~~K 36 (211)
T COG2910 1 MKIAIIGASGKAGS-----RILKEALKRGHEVTAIVRNASK 36 (211)
T ss_pred CeEEEEecCchhHH-----HHHHHHHhCCCeeEEEEeChHh
Confidence 78888765554 43 6899999999999988866544
No 187
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=79.70 E-value=2.8 Score=33.56 Aligned_cols=37 Identities=14% Similarity=0.119 Sum_probs=33.3
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
||++.+.++..|.....-++..|..+|++|++.....
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~ 37 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDV 37 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCC
Confidence 5899999999999999999999999999998877543
No 188
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=79.39 E-value=36 Score=28.44 Aligned_cols=136 Identities=14% Similarity=0.136 Sum_probs=78.2
Q ss_pred eEEEEeCcccCCCHHHHHHHHHHHHhCCCCE-EEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCc
Q 011765 279 VVYVAFGSEAKPSQEELTEIALGLELSKLPF-FWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSV 357 (478)
Q Consensus 279 ~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~ 357 (478)
.|-|-+||-+ +-+.++..++.|+++++++ +++++. ...|+... .|+-. .....+
T Consensus 4 ~V~IIMGS~S--D~~~mk~Aa~~L~~fgi~ye~~VvSA---------HRTPe~m~-----------~ya~~---a~~~g~ 58 (162)
T COG0041 4 KVGIIMGSKS--DWDTMKKAAEILEEFGVPYEVRVVSA---------HRTPEKMF-----------EYAEE---AEERGV 58 (162)
T ss_pred eEEEEecCcc--hHHHHHHHHHHHHHcCCCeEEEEEec---------cCCHHHHH-----------HHHHH---HHHCCC
Confidence 4666788866 6777888888899999876 344432 33444211 11111 112344
Q ss_pred eeeeeccChh---hHHHHHHhCCcEecccccc---chhhHHHHHhhc--Ce--EEEeeccCCCCcccHHHHHHHHHHHhc
Q 011765 358 GGFLTHAGWS---SVVEALQFGMPLIVLTCYA---DQGLNAKLLEEK--QI--VELIPRDEGDGFFTRNSVAESLRLVLV 427 (478)
Q Consensus 358 ~~~ItHgG~~---s~~eal~~GvP~l~~P~~~---DQ~~na~~v~~~--g~--G~~l~~~~~~~~~~~~~l~~~i~~ll~ 427 (478)
+.+|.=+|.- .=+=|-..=+|+|++|... +..+--.-++++ |+ |...-... .|+.-|+..|-. +.
T Consensus 59 ~viIAgAGgAAHLPGmvAa~T~lPViGVPv~s~~L~GlDSL~SiVQMP~GvPVaTvaIg~a----~NAallAa~ILa-~~ 133 (162)
T COG0041 59 KVIIAGAGGAAHLPGMVAAKTPLPVIGVPVQSKALSGLDSLLSIVQMPAGVPVATVAIGNA----ANAALLAAQILA-IK 133 (162)
T ss_pred eEEEecCcchhhcchhhhhcCCCCeEeccCccccccchHHHHHHhcCCCCCeeEEEeecch----hhHHHHHHHHHc-CC
Confidence 4466554431 1122334468999999863 445556667777 44 22222221 366666555432 23
Q ss_pred ccchHHHHHHHHHHHHHhcc
Q 011765 428 EEKGQIYRDKAKEMKGLFGD 447 (478)
Q Consensus 428 ~~~~~~~~~~a~~~~~~~~~ 447 (478)
|++++++++++++...+
T Consensus 134 ---d~~l~~kl~~~r~~~~~ 150 (162)
T COG0041 134 ---DPELAEKLAEFREAQTE 150 (162)
T ss_pred ---CHHHHHHHHHHHHHHHH
Confidence 68999999999988653
No 189
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=78.99 E-value=1.9 Score=35.23 Aligned_cols=45 Identities=9% Similarity=0.016 Sum_probs=36.6
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRL 52 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~ 52 (478)
|||++...++.+=.. ...+.++|.++|++|.++.++...+++...
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~ 45 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTPE 45 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhhh
Confidence 688888888766666 999999999999999999999887776653
No 190
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=78.25 E-value=4.1 Score=40.09 Aligned_cols=110 Identities=15% Similarity=0.244 Sum_probs=65.7
Q ss_pred CcEEEe-ccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccC-CCC--cc
Q 011765 338 RGVVYT-SWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDE-GDG--FF 413 (478)
Q Consensus 338 ~n~~~~-~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~-~~~--~~ 413 (478)
++++.. +..+-.++|..+++ +||-- ...+.|.+..++|+|......|.+... -|...+..+ -.| .-
T Consensus 252 ~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~~-------rg~~~~~~~~~pg~~~~ 321 (369)
T PF04464_consen 252 SNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEKE-------RGFYFDYEEDLPGPIVY 321 (369)
T ss_dssp TTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTT-------SSBSS-TTTSSSS-EES
T ss_pred CcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhhc-------cCCCCchHhhCCCceeC
Confidence 366553 34466889999999 99997 457899999999999888777766332 233333211 011 24
Q ss_pred cHHHHHHHHHHHhcccchHHHHHHHHHHHHHhc---ccCChHHHHHHHH
Q 011765 414 TRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFG---DKGRHDRYVDNFL 459 (478)
Q Consensus 414 ~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~i~ 459 (478)
+.++|.++|+.++++ +..++++.++..+.+. ++..+++.++.|+
T Consensus 322 ~~~eL~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 322 NFEELIEAIENIIEN--PDEYKEKREKFRDKFFKYNDGNSSERIVNYIF 368 (369)
T ss_dssp SHHHHHHHHTTHHHH--HHHTHHHHHHHHHHHSTT--S-HHHHHHHHHH
T ss_pred CHHHHHHHHHhhhhC--CHHHHHHHHHHHHHhCCCCCchHHHHHHHHHh
Confidence 789999999999883 3455666777777764 4554445544443
No 191
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=76.40 E-value=13 Score=28.80 Aligned_cols=87 Identities=18% Similarity=0.099 Sum_probs=50.9
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCC-CeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCCh
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKG-HKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPY 85 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rG-h~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~ 85 (478)
||||++-.+++-| +||..|.+.- .+-.|+.+. +-. .... .+.+.+.
T Consensus 1 MkVLviGsGgREH-----Aia~~l~~s~~v~~v~~aPG-N~G-~~~~-------~~~~~~~------------------- 47 (100)
T PF02844_consen 1 MKVLVIGSGGREH-----AIAWKLSQSPSVEEVYVAPG-NPG-TAEL-------GKNVPID------------------- 47 (100)
T ss_dssp EEEEEEESSHHHH-----HHHHHHTTCTTEEEEEEEE---TT-GGGT-------SEEE-S--------------------
T ss_pred CEEEEECCCHHHH-----HHHHHHhcCCCCCEEEEeCC-CHH-HHhh-------ceecCCC-------------------
Confidence 8999999999888 5889998753 222333333 211 1111 1122111
Q ss_pred hHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcc---cHHHHHHHhCCCeEE
Q 011765 86 DEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAY---WLPARARELGIPSGF 136 (478)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~---~~~~~A~~lgIP~i~ 136 (478)
..-.+.+.+..++.++|+||..+-.+ ...+..+..|||++.
T Consensus 48 ----------~~d~~~l~~~a~~~~idlvvvGPE~pL~~Gl~D~l~~~gi~vfG 91 (100)
T PF02844_consen 48 ----------ITDPEELADFAKENKIDLVVVGPEAPLVAGLADALRAAGIPVFG 91 (100)
T ss_dssp ----------TT-HHHHHHHHHHTTESEEEESSHHHHHTTHHHHHHHTT-CEES
T ss_pred ----------CCCHHHHHHHHHHcCCCEEEECChHHHHHHHHHHHHHCCCcEEC
Confidence 11123566677788999999997444 345677888999874
No 192
>PRK09620 hypothetical protein; Provisional
Probab=75.94 E-value=30 Score=31.49 Aligned_cols=21 Identities=14% Similarity=0.225 Sum_probs=18.3
Q ss_pred HHHHHHHHHhCCCeEEEEeCC
Q 011765 23 WLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 23 ~l~La~~L~~rGh~Vt~~~~~ 43 (478)
-..||++|..+|++|+++...
T Consensus 32 Gs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 32 GRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred HHHHHHHHHHCCCeEEEEeCC
Confidence 378999999999999998755
No 193
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=75.42 E-value=4.8 Score=38.45 Aligned_cols=41 Identities=22% Similarity=0.296 Sum_probs=33.0
Q ss_pred cEEEEe-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccc
Q 011765 7 LQIAMF-PWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNID 47 (478)
Q Consensus 7 ~~il~~-~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 47 (478)
||++|+ .-++.|-..-..++|-.++++|++|.++++++...
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence 567665 45567999999999999999999999999988754
No 194
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=73.53 E-value=52 Score=30.54 Aligned_cols=98 Identities=12% Similarity=0.149 Sum_probs=53.1
Q ss_pred HHHHHHHHHhC---CCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChhHHHHHHHHHhhhh
Q 011765 23 WLELAKLIAQK---GHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYDEVKYLKQSFDCLE 99 (478)
Q Consensus 23 ~l~La~~L~~r---Gh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (478)
+..|+++|... |++|+++.+...+.-+... -+....+++..+. + +.......+. +...
T Consensus 16 l~aL~~~l~~~~~~~~~V~VVAP~~eqSg~gha-iT~~~pl~~~~~~----~----~~yav~GTPa----------DCV~ 76 (261)
T PRK13931 16 LEVLEQIATELAGPDGEVWTVAPAFEQSGVGHC-ISYTHPMMIAELG----P----RRFAAEGSPA----------DCVL 76 (261)
T ss_pred HHHHHHHHHHhccCCCeEEEEeCCCCCCCCccc-ccCCCCeEEEEeC----C----CeEEEcCchH----------HHHH
Confidence 55677777663 4799999888776533221 1122234444432 1 1111111121 1222
Q ss_pred HHHHHHHhhcCCCEEEEcC----------Ccc---cHHHHHHHhCCCeEEEec
Q 011765 100 EPMAKLLQSLAPDWLLFDF----------AAY---WLPARARELGIPSGFFSI 139 (478)
Q Consensus 100 ~~l~~ll~~~~pD~vI~D~----------~~~---~~~~~A~~lgIP~i~~~~ 139 (478)
-.+..++...+||+||+.. +.+ .|.+-|..+|||.|.++.
T Consensus 77 lal~~~~~~~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 77 AALYDVMKDAPPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred HHHHHhcCCCCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 2444555436899999753 222 344567888999999965
No 195
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=73.40 E-value=13 Score=34.44 Aligned_cols=37 Identities=22% Similarity=0.156 Sum_probs=31.9
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 011765 9 IAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRN 45 (478)
Q Consensus 9 il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~ 45 (478)
+++..-++.|...-..++|..++++|++|.++..+..
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 3445677889999999999999999999999988764
No 196
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=73.20 E-value=10 Score=38.16 Aligned_cols=92 Identities=16% Similarity=0.038 Sum_probs=54.3
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCC
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLP 84 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~ 84 (478)
++||||++..+++-| +||.+|++.++-..+++.+.+...... + .....+ + . .
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn~g~~~~-~-------~~~~~~------~--~---~---- 54 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGNGGFPDD-E-------LLPADS------F--S---I---- 54 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCchHHhcc-c-------cccccC------c--C---c----
Confidence 369999999998887 689999998855555554433211110 0 000000 0 0 0
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCccc---HHHHHHHhCCCeEE
Q 011765 85 YDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYW---LPARARELGIPSGF 136 (478)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~---~~~~A~~lgIP~i~ 136 (478)
.-.+.+.++.++.++|+||.+.-.+. ...+++.+|||++.
T Consensus 55 ------------~d~~~l~~~a~~~~iD~Vv~g~E~~l~~glad~~~~~Gip~~G 97 (426)
T PRK13789 55 ------------LDKSSVQSFLKSNPFDLIVVGPEDPLVAGFADWAAELGIPCFG 97 (426)
T ss_pred ------------CCHHHHHHHHHHcCCCEEEECCchHHHHHHHHHHHHcCCCcCC
Confidence 00123445667779999998764443 23566789999764
No 197
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=73.01 E-value=9.6 Score=35.07 Aligned_cols=26 Identities=23% Similarity=0.132 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 19 HMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 19 H~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
=-.-+-.|+++|+++||+|+++++..
T Consensus 18 Lgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 18 LGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 33457789999999999999999764
No 198
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=72.89 E-value=8.2 Score=28.40 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=32.0
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFIS 41 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~ 41 (478)
+.-++++..+...|...+..+|+.|.++|+.|...-
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D 50 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYD 50 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 367888999999999999999999999999998654
No 199
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=72.54 E-value=12 Score=37.51 Aligned_cols=93 Identities=18% Similarity=0.255 Sum_probs=54.2
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChhH
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYDE 87 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~~ 87 (478)
|+.++..+.. ...+++.|.+-|-+|+.+++........+.. .+. + +.+........
T Consensus 287 kv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~~~~~~~~~~~------~~~--~-----~~~~~~v~~~~------ 342 (422)
T TIGR02015 287 RVTVSGYEGS-----ELLVVRLLLESGADVPYVGTAIPRTAWGAED------KRW--L-----EMLGVEVKYRA------ 342 (422)
T ss_pred eEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecCCCCccccHHH------HHH--H-----HhcCCCceecc------
Confidence 6666666655 8889999999999999887663211111100 000 0 00100000000
Q ss_pred HHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEE
Q 011765 88 VKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFF 137 (478)
Q Consensus 88 ~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~ 137 (478)
.+.+.+ +.+++.+||++|... .+..+|+++|||++.+
T Consensus 343 ---------dl~~~~-~~l~~~~pDllig~s---~~~~~A~k~gIP~vr~ 379 (422)
T TIGR02015 343 ---------SLEDDM-EAVLEFEPDLAIGTT---PLVQFAKEHGIPALYF 379 (422)
T ss_pred ---------CHHHHH-HHHhhCCCCEEEcCC---cchHHHHHcCCCEEEe
Confidence 011111 455778999999883 4667899999999986
No 200
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=72.49 E-value=12 Score=28.23 Aligned_cols=79 Identities=16% Similarity=0.231 Sum_probs=48.8
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChhHHHHHHHHHhhhhHHH
Q 011765 23 WLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYDEVKYLKQSFDCLEEPM 102 (478)
Q Consensus 23 ~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 102 (478)
++.+++.|.+.|++|. +| +...+.+++.| +.+...- ..+.++ . +.+
T Consensus 2 ~~~~~~~l~~lG~~i~-AT-~gTa~~L~~~G------i~~~~~~----~ki~~~------~----------------~~i 47 (90)
T smart00851 2 LVELAKRLAELGFELV-AT-GGTAKFLREAG------LPVKTLH----PKVHGG------I----------------LAI 47 (90)
T ss_pred HHHHHHHHHHCCCEEE-Ec-cHHHHHHHHCC------Ccceecc----CCCCCC------C----------------HHH
Confidence 4688999999999983 44 44456666666 5543111 011010 0 136
Q ss_pred HHHHhhcCCCEEEEcCCc---------ccHHHHHHHhCCCeE
Q 011765 103 AKLLQSLAPDWLLFDFAA---------YWLPARARELGIPSG 135 (478)
Q Consensus 103 ~~ll~~~~pD~vI~D~~~---------~~~~~~A~~lgIP~i 135 (478)
.++++..+.|+||..... ..-..+|...+||++
T Consensus 48 ~~~i~~g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 48 LDLIKNGEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHHhcCCCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 777888899999985421 122356888899986
No 201
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=72.18 E-value=7.6 Score=35.57 Aligned_cols=99 Identities=11% Similarity=0.101 Sum_probs=52.1
Q ss_pred CCceEEEEeCcccC---CCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEecc--CCh-h
Q 011765 276 KGSVVYVAFGSEAK---PSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSW--APQ-L 349 (478)
Q Consensus 276 ~~~~v~vs~Gs~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~--vpq-~ 349 (478)
+++.|.|..|+... .+.+.+.++++.|.+.+.+++...+..+ .....-+.+.+......+.+..- +.+ .
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ 178 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEE-----QEKEIADQIAAGLQNPVINLAGKTSLRELA 178 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHH-----HHHHHHHHHHTTHTTTTEEETTTS-HHHHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchH-----HHHHHHHHHHHhcccceEeecCCCCHHHHH
Confidence 45688888887653 5678899999999887755544332210 00000011111111112333221 222 5
Q ss_pred hhhcCCCceeeeeccChhhHHHHHHhCCcEecc
Q 011765 350 AILAHDSVGGFLTHAGWSSVVEALQFGMPLIVL 382 (478)
Q Consensus 350 ~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~ 382 (478)
+++.++++ +|+. -.|.++=|.+.|+|+|++
T Consensus 179 ali~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 179 ALISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HHHhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 67788888 8887 467899999999999998
No 202
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=71.71 E-value=13 Score=29.41 Aligned_cols=85 Identities=19% Similarity=0.079 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChhHHHHHHHHHhhh
Q 011765 19 HMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYDEVKYLKQSFDCL 98 (478)
Q Consensus 19 H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (478)
+=.-++.+|+.|...|+++. +++...+.+++.| +.+..+. ...++ -
T Consensus 10 ~K~~~~~~a~~l~~~G~~i~--AT~gTa~~L~~~G------i~~~~v~-----~~~~~---------------------g 55 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPLF--ATGGTSRVLADAG------IPVRAVS-----KRHED---------------------G 55 (112)
T ss_pred cHHHHHHHHHHHHHCCCEEE--ECcHHHHHHHHcC------CceEEEE-----ecCCC---------------------C
Confidence 34557899999999999883 4555555566666 6666553 11110 1
Q ss_pred hHHHHHHHhh-cCCCEEEEcC--Cc--------ccHHHHHHHhCCCeEEE
Q 011765 99 EEPMAKLLQS-LAPDWLLFDF--AA--------YWLPARARELGIPSGFF 137 (478)
Q Consensus 99 ~~~l~~ll~~-~~pD~vI~D~--~~--------~~~~~~A~~lgIP~i~~ 137 (478)
.+.+.+++++ .+.|+||.-+ .. +.-..+|-..+||++.-
T Consensus 56 ~~~i~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T~ 105 (112)
T cd00532 56 EPTVDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTTP 105 (112)
T ss_pred CcHHHHHHhCCCCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEEC
Confidence 2466777778 8999999732 22 11235788889999964
No 203
>PRK05595 replicative DNA helicase; Provisional
Probab=71.59 E-value=18 Score=36.69 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=33.6
Q ss_pred EEEecCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCCccccC
Q 011765 9 IAMFPWLAFGHMIPWLELAKLIA-QKGHKIFFISTPRNIDRL 49 (478)
Q Consensus 9 il~~~~~~~gH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~~ 49 (478)
+++...|+.|-..-.+.+|..++ +.|+.|.|++.+...+.+
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l 245 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQL 245 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHH
Confidence 45678889999999999998876 569999999988765443
No 204
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=71.15 E-value=3 Score=42.01 Aligned_cols=67 Identities=18% Similarity=0.212 Sum_probs=49.0
Q ss_pred ccChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHH
Q 011765 363 HAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEM 441 (478)
Q Consensus 363 HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~ 441 (478)
|-|. ++.||+++|+|+|+. ++..=+..++..--|...+..+ -....+++++.++.. |++++.++.+-
T Consensus 377 ~FGi-v~IEAMa~glPvvAt----~~GGP~EiV~~~~tG~l~dp~~----e~~~~~a~~~~kl~~---~p~l~~~~~~~ 443 (495)
T KOG0853|consen 377 HFGI-VPIEAMACGLPVVAT----NNGGPAEIVVHGVTGLLIDPGQ----EAVAELADALLKLRR---DPELWARMGKN 443 (495)
T ss_pred Cccc-eeHHHHhcCCCEEEe----cCCCceEEEEcCCcceeeCCch----HHHHHHHHHHHHHhc---CHHHHHHHHHH
Confidence 4444 689999999999984 4444555555556677777643 345589999999999 89988776543
No 205
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=70.37 E-value=73 Score=33.50 Aligned_cols=139 Identities=14% Similarity=0.085 Sum_probs=76.1
Q ss_pred CceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCC
Q 011765 277 GSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDS 356 (478)
Q Consensus 277 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~ 356 (478)
++.|-|-+||.+ +....++....|+..+..+-..+.. .-..|+.+. .|+-+.+- ...+
T Consensus 410 ~~~v~i~~gs~s--d~~~~~~~~~~l~~~g~~~~~~v~s--------ahr~~~~~~-----------~~~~~~~~-~~~~ 467 (577)
T PLN02948 410 TPLVGIIMGSDS--DLPTMKDAAEILDSFGVPYEVTIVS--------AHRTPERMF-----------SYARSAHS-RGLQ 467 (577)
T ss_pred CCeEEEEECchh--hHHHHHHHHHHHHHcCCCeEEEEEC--------CccCHHHHH-----------HHHHHHHH-CCCC
Confidence 445666677655 6677777777777777765443331 233443221 12222111 1234
Q ss_pred ceeeeeccChhhHHHHHH---hCCcEecccccc---chhhHHHHHhhc--CeEEEee-c-cCCCCcccHHHHHHHHHHHh
Q 011765 357 VGGFLTHAGWSSVVEALQ---FGMPLIVLTCYA---DQGLNAKLLEEK--QIVELIP-R-DEGDGFFTRNSVAESLRLVL 426 (478)
Q Consensus 357 ~~~~ItHgG~~s~~eal~---~GvP~l~~P~~~---DQ~~na~~v~~~--g~G~~l~-~-~~~~~~~~~~~l~~~i~~ll 426 (478)
+ ||+=+|+-.-+-.+- .-+|+|++|... +..+-..-+.++ |+.+..- . .. .++.-++..|-. +
T Consensus 468 v--~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~~~p~g~pv~~v~i~~~----~~aa~~a~~i~~-~ 540 (577)
T PLN02948 468 V--IIAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIVQMPRGVPVATVAIGNA----TNAGLLAVRMLG-A 540 (577)
T ss_pred E--EEEEcCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHhcCCCCCeEEEEecCCh----HHHHHHHHHHHh-c
Confidence 4 888777643333322 246999999843 344444446667 7432221 1 22 466655544422 2
Q ss_pred cccchHHHHHHHHHHHHHhcc
Q 011765 427 VEEKGQIYRDKAKEMKGLFGD 447 (478)
Q Consensus 427 ~~~~~~~~~~~a~~~~~~~~~ 447 (478)
. |++++++++..++.+++
T Consensus 541 ~---~~~~~~~~~~~~~~~~~ 558 (577)
T PLN02948 541 S---DPDLLDKMEAYQEDMRD 558 (577)
T ss_pred C---CHHHHHHHHHHHHHHHH
Confidence 3 68899999888888764
No 206
>PRK09165 replicative DNA helicase; Provisional
Probab=69.71 E-value=20 Score=36.90 Aligned_cols=41 Identities=20% Similarity=0.152 Sum_probs=33.6
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhC---------------CCeEEEEeCCCccccC
Q 011765 9 IAMFPWLAFGHMIPWLELAKLIAQK---------------GHKIFFISTPRNIDRL 49 (478)
Q Consensus 9 il~~~~~~~gH~~p~l~La~~L~~r---------------Gh~Vt~~~~~~~~~~~ 49 (478)
+++...|+.|-..-++.+|...+.+ |..|.|++-+...+.+
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql 275 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQL 275 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHH
Confidence 5667888999999999999888753 7899999988776544
No 207
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=69.65 E-value=68 Score=27.09 Aligned_cols=133 Identities=13% Similarity=0.084 Sum_probs=71.9
Q ss_pred EEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeee
Q 011765 282 VAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFL 361 (478)
Q Consensus 282 vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~I 361 (478)
|-+||.+ +....+++.+.|+..+.++-..+. ..-..|+.+. .|+-+..- ....+ ||
T Consensus 3 IimGS~S--D~~~~~~a~~~L~~~gi~~dv~V~--------SaHRtp~~~~-----------~~~~~a~~-~g~~v--iI 58 (156)
T TIGR01162 3 IIMGSDS--DLPTMKKAADILEEFGIPYELRVV--------SAHRTPELML-----------EYAKEAEE-RGIKV--II 58 (156)
T ss_pred EEECcHh--hHHHHHHHHHHHHHcCCCeEEEEE--------CcccCHHHHH-----------HHHHHHHH-CCCeE--EE
Confidence 3456655 677888888889888887533332 2234454322 22222110 12344 88
Q ss_pred eccChhhHHHHHH---hCCcEecccccc---chhhHHHHHhhc--Ce--EEEeeccCCCCcccHHHHHHHHHHHhcccch
Q 011765 362 THAGWSSVVEALQ---FGMPLIVLTCYA---DQGLNAKLLEEK--QI--VELIPRDEGDGFFTRNSVAESLRLVLVEEKG 431 (478)
Q Consensus 362 tHgG~~s~~eal~---~GvP~l~~P~~~---DQ~~na~~v~~~--g~--G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~ 431 (478)
+=+|+..-+-.+- .-+|+|.+|... +-.+--.-+.++ |+ +...-... .++..++..|-. +. |
T Consensus 59 a~AG~aa~Lpgvva~~t~~PVIgvP~~~~~l~G~daLlS~vqmP~gvpvatv~I~~~----~nAa~~AaqIl~-~~---d 130 (156)
T TIGR01162 59 AGAGGAAHLPGMVAALTPLPVIGVPVPSKALSGLDSLLSIVQMPSGVPVATVAIGNA----GNAALLAAQILG-IK---D 130 (156)
T ss_pred EeCCccchhHHHHHhccCCCEEEecCCccCCCCHHHHHHHhcCCCCCeeEEEEcCCh----hHHHHHHHHHHc-CC---C
Confidence 8888643333322 346999999743 122222234453 53 33332222 466666655532 23 5
Q ss_pred HHHHHHHHHHHHHhc
Q 011765 432 QIYRDKAKEMKGLFG 446 (478)
Q Consensus 432 ~~~~~~a~~~~~~~~ 446 (478)
++++++.+..++...
T Consensus 131 ~~l~~kl~~~r~~~~ 145 (156)
T TIGR01162 131 PELAEKLKEYRENQK 145 (156)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888998888887764
No 208
>PRK06321 replicative DNA helicase; Provisional
Probab=69.18 E-value=30 Score=35.29 Aligned_cols=41 Identities=17% Similarity=0.160 Sum_probs=34.1
Q ss_pred EEEecCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCCccccC
Q 011765 9 IAMFPWLAFGHMIPWLELAKLIAQ-KGHKIFFISTPRNIDRL 49 (478)
Q Consensus 9 il~~~~~~~gH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~~ 49 (478)
|++...|+.|-..-.+.+|...+. .|..|.|++-+...+.+
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql 270 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQL 270 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 566788899999999999999874 59999999988766543
No 209
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=68.85 E-value=13 Score=37.54 Aligned_cols=34 Identities=26% Similarity=0.202 Sum_probs=28.2
Q ss_pred HHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEE
Q 011765 101 PMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFF 137 (478)
Q Consensus 101 ~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~ 137 (478)
.+.+++++.+||+||.+. ....+|+++|+|++.+
T Consensus 362 el~~~i~~~~pdliig~~---~~~~~a~~~~ip~i~~ 395 (428)
T cd01965 362 DLESLAKEEPVDLLIGNS---HGRYLARDLGIPLVRV 395 (428)
T ss_pred HHHHHhhccCCCEEEECc---hhHHHHHhcCCCEEEe
Confidence 566777888999999995 3568889999999876
No 210
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=68.59 E-value=40 Score=30.86 Aligned_cols=91 Identities=22% Similarity=0.178 Sum_probs=56.5
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccC-CCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRL-PRLPQNLASMIQFVKISLPHVDNLRENAEATIDLP 84 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~-~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~ 84 (478)
+|+|+++..-+ =...|++.|...++.+++.+...+-... .+.+ + .... +
T Consensus 2 ~~~ilvlGGT~-----Dar~la~~L~~~~~~~~~ss~t~~g~~l~~~~~----~----~~~~-----G------------ 51 (257)
T COG2099 2 MMRILLLGGTS-----DARALAKKLAAAPVDIILSSLTGYGAKLAEQIG----P----VRVG-----G------------ 51 (257)
T ss_pred CceEEEEeccH-----HHHHHHHHhhccCccEEEEEcccccccchhccC----C----eeec-----C------------
Confidence 56677664333 3478999999999887777755543322 2211 0 1110 0
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcc------cHHHHHHHhCCCeEEE
Q 011765 85 YDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAY------WLPARARELGIPSGFF 137 (478)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~------~~~~~A~~lgIP~i~~ 137 (478)
..-.+.|.+++++.+.|+||--..-+ -++.+|+..|||++.+
T Consensus 52 -----------~l~~e~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~ 99 (257)
T COG2099 52 -----------FLGAEGLAAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRL 99 (257)
T ss_pred -----------cCCHHHHHHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEE
Confidence 01134778888899999988443222 2456789999999998
No 211
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=68.53 E-value=22 Score=31.83 Aligned_cols=36 Identities=19% Similarity=0.251 Sum_probs=30.7
Q ss_pred EEEEecCC--CccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 8 QIAMFPWL--AFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 8 ~il~~~~~--~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
+|.+++.+ +-|-..-..+|+-+|+++|++|.++-.+
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~D 40 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFD 40 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecC
Confidence 56666655 6699999999999999999999998765
No 212
>PRK08760 replicative DNA helicase; Provisional
Probab=68.10 E-value=24 Score=36.04 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=34.0
Q ss_pred EEEecCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCCccccC
Q 011765 9 IAMFPWLAFGHMIPWLELAKLIAQ-KGHKIFFISTPRNIDRL 49 (478)
Q Consensus 9 il~~~~~~~gH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~~ 49 (478)
|++...|+.|-..-.+.+|...+. .|+.|.|++-+...+.+
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql 273 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQL 273 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHH
Confidence 566788899999999999998875 59999999988766533
No 213
>PRK10867 signal recognition particle protein; Provisional
Probab=67.47 E-value=37 Score=34.11 Aligned_cols=43 Identities=19% Similarity=0.168 Sum_probs=36.9
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCCcccc
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQK-GHKIFFISTPRNIDR 48 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~ 48 (478)
+.-|+++..++.|-..-...||..|+.+ |+.|.+++.+.++..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a 143 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA 143 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH
Confidence 3456777888999999999999999999 999999999887653
No 214
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=66.95 E-value=1.1e+02 Score=31.52 Aligned_cols=107 Identities=17% Similarity=0.144 Sum_probs=67.9
Q ss_pred EEEeccCChhh---hhcCCCceeee---eccChh-hHHHHHHhCC----cEeccccccchhhHHHHHhhcCeEEEeeccC
Q 011765 340 VVYTSWAPQLA---ILAHDSVGGFL---THAGWS-SVVEALQFGM----PLIVLTCYADQGLNAKLLEEKQIVELIPRDE 408 (478)
Q Consensus 340 ~~~~~~vpq~~---vL~~~~~~~~I---tHgG~~-s~~eal~~Gv----P~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~ 408 (478)
+++...+|+.+ ++..+++ ++ ..-|+| ...|.++++. |+|.--+.+= | +++.-++.+++
T Consensus 364 ~~~~~~v~~~el~alYr~ADV--~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaGa----a---~~l~~AllVNP-- 432 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV--MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAGA----A---VELKGALLTNP-- 432 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE--EEECccccccCcchhhHHhhhcCCCCCEEEeccccc----h---hhcCCCEEECC--
Confidence 45667788766 4456777 44 355888 5559999988 6555444321 1 33333666666
Q ss_pred CCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHH
Q 011765 409 GDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLK 463 (478)
Q Consensus 409 ~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~ 463 (478)
.+.++++++|.++|+-. .++-++|.+++.+.+.... ...=++.+++.+.
T Consensus 433 ----~d~~~~A~ai~~AL~m~-~~Er~~R~~~l~~~v~~~d-~~~W~~~fl~~l~ 481 (487)
T TIGR02398 433 ----YDPVRMDETIYVALAMP-KAEQQARMREMFDAVNYYD-VQRWADEFLAAVS 481 (487)
T ss_pred ----CCHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhhCC-HHHHHHHHHHHhh
Confidence 48999999999999832 2455777777777775554 3333445555443
No 215
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=66.69 E-value=25 Score=27.60 Aligned_cols=84 Identities=17% Similarity=0.143 Sum_probs=57.0
Q ss_pred cCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChhHHHHHHHHHhh
Q 011765 18 GHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYDEVKYLKQSFDC 97 (478)
Q Consensus 18 gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 97 (478)
++-.-++.+++.|.+.|+++. +++...+.+...| +.+..+.. ...
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l~--aT~gT~~~l~~~g------i~~~~v~~-----~~~---------------------- 54 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKLV--ATEGTAKYLQEAG------IPVEVVNK-----VSE---------------------- 54 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEEE--EchHHHHHHHHcC------CeEEEEee-----cCC----------------------
Confidence 355678899999999999983 4555556666666 66665531 100
Q ss_pred hhHHHHHHHhhcCCCEEEEcCC-------cccHHHHHHHhCCCeEE
Q 011765 98 LEEPMAKLLQSLAPDWLLFDFA-------AYWLPARARELGIPSGF 136 (478)
Q Consensus 98 ~~~~l~~ll~~~~pD~vI~D~~-------~~~~~~~A~~lgIP~i~ 136 (478)
-.+.+.+++++.++|+||.-+. ...-...|-..|||++.
T Consensus 55 ~~~~i~~~i~~~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 55 GRPNIVDLIKNGEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred CchhHHHHHHcCCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 1135677777889999998532 22345678899999995
No 216
>PRK12342 hypothetical protein; Provisional
Probab=66.35 E-value=12 Score=34.54 Aligned_cols=39 Identities=18% Similarity=0.053 Sum_probs=28.9
Q ss_pred HHHHHHhhcCCCEEEEcCCcc------cHHHHHHHhCCCeEEEec
Q 011765 101 PMAKLLQSLAPDWLLFDFAAY------WLPARARELGIPSGFFSI 139 (478)
Q Consensus 101 ~l~~ll~~~~pD~vI~D~~~~------~~~~~A~~lgIP~i~~~~ 139 (478)
.|...+++.+||+|++..... -+..+|+.||+|++....
T Consensus 100 ~La~~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~ 144 (254)
T PRK12342 100 ALAAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVS 144 (254)
T ss_pred HHHHHHHHhCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEE
Confidence 444555556799999875433 367899999999998755
No 217
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=65.48 E-value=11 Score=36.09 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=35.7
Q ss_pred HHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcc-------cHH---HHHHHhCCCeEEE
Q 011765 90 YLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAY-------WLP---ARARELGIPSGFF 137 (478)
Q Consensus 90 ~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~-------~~~---~~A~~lgIP~i~~ 137 (478)
++.+..+...+.+.+++++.+||++|+.+.+- |+. .+.++++||.++-
T Consensus 60 yf~en~eea~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 60 YFNENKEEALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred hhhhCHHHHHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 55566666777889999999999999997332 221 3567899999964
No 218
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=64.94 E-value=25 Score=27.92 Aligned_cols=87 Identities=18% Similarity=0.167 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChhHHHHHHHHHhhh
Q 011765 19 HMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYDEVKYLKQSFDCL 98 (478)
Q Consensus 19 H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (478)
+-.-+..+|+.|.+.|.+|. +++...+.+.+.| +.+..+. .+.+ ... .+
T Consensus 11 dk~~~~~~a~~l~~~G~~i~--aT~gTa~~L~~~g------i~~~~v~-----~~~~-~~~-~~---------------- 59 (116)
T cd01423 11 SKPELLPTAQKLSKLGYKLY--ATEGTADFLLENG------IPVTPVA-----WPSE-EPQ-ND---------------- 59 (116)
T ss_pred cchhHHHHHHHHHHCCCEEE--EccHHHHHHHHcC------CCceEee-----eccC-CCC-CC----------------
Confidence 44567899999999999883 4555555555666 5555442 1100 000 00
Q ss_pred hHHHHHHHhhcCCCEEEEcCC---------cccHHHHHHHhCCCeEE
Q 011765 99 EEPMAKLLQSLAPDWLLFDFA---------AYWLPARARELGIPSGF 136 (478)
Q Consensus 99 ~~~l~~ll~~~~pD~vI~D~~---------~~~~~~~A~~lgIP~i~ 136 (478)
.+.+.+++++.++|+||.-+. ...-...|-.+|||++.
T Consensus 60 ~~~i~~~i~~~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 60 KPSLRELLAEGKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred chhHHHHHHcCCceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 146777888889999998532 22345678889999973
No 219
>PRK07773 replicative DNA helicase; Validated
Probab=64.69 E-value=31 Score=38.40 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=34.4
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCCccccC
Q 011765 9 IAMFPWLAFGHMIPWLELAKLIAQK-GHKIFFISTPRNIDRL 49 (478)
Q Consensus 9 il~~~~~~~gH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~~ 49 (478)
|++...|+.|-..-.+++|...+.+ |..|.|++-+...+.+
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql 261 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQL 261 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHH
Confidence 6777889999999999999998765 8999999988776544
No 220
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=64.66 E-value=41 Score=30.60 Aligned_cols=42 Identities=26% Similarity=0.351 Sum_probs=34.6
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCCccccC
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQK-GHKIFFISTPRNIDRL 49 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~~ 49 (478)
=+++...|+.|=..-++.++..++.+ |+.|.|++.+...+.+
T Consensus 15 l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~ 57 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQL 57 (242)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHH
Confidence 34667778889999999999988887 9999999988766533
No 221
>PRK05636 replicative DNA helicase; Provisional
Probab=64.64 E-value=18 Score=37.16 Aligned_cols=42 Identities=10% Similarity=0.089 Sum_probs=33.3
Q ss_pred EEEEecCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCCccccC
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIA-QKGHKIFFISTPRNIDRL 49 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~~ 49 (478)
=|++...|+.|-..-.+.+|...+ +.|..|.|++.+...+.+
T Consensus 267 Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql 309 (505)
T PRK05636 267 MIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEI 309 (505)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHH
Confidence 356678889999999999998876 458999999888765433
No 222
>PRK05920 aromatic acid decarboxylase; Validated
Probab=64.57 E-value=6.5 Score=34.92 Aligned_cols=46 Identities=13% Similarity=0.049 Sum_probs=36.3
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCC
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPR 51 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~ 51 (478)
+.+||++.-.++.+ .+=...+.+.|.+.||+|.++.+....+++..
T Consensus 2 ~~krIllgITGsia-a~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~~ 47 (204)
T PRK05920 2 KMKRIVLAITGASG-AIYGVRLLECLLAADYEVHLVISKAAQKVLAT 47 (204)
T ss_pred CCCEEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEEEChhHHHHHHH
Confidence 45688776555444 47899999999999999999999988776643
No 223
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=64.43 E-value=3.3 Score=31.73 Aligned_cols=84 Identities=20% Similarity=0.211 Sum_probs=50.3
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChhHHHHHHHHHhhhhHHH
Q 011765 23 WLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYDEVKYLKQSFDCLEEPM 102 (478)
Q Consensus 23 ~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 102 (478)
++.+|+.|.+.|+++ ++++...+.+++.| +.+..+- +....+ ... ... ..+
T Consensus 2 ~~~~a~~l~~lG~~i--~AT~gTa~~L~~~G------i~~~~v~----~~~~~~-~~~---~g~-------------~~i 52 (95)
T PF02142_consen 2 IVPLAKRLAELGFEI--YATEGTAKFLKEHG------IEVTEVV----NKIGEG-ESP---DGR-------------VQI 52 (95)
T ss_dssp HHHHHHHHHHTTSEE--EEEHHHHHHHHHTT--------EEECC----EEHSTG--GG---THC-------------HHH
T ss_pred HHHHHHHHHHCCCEE--EEChHHHHHHHHcC------CCceeee----eecccC-ccC---Cch-------------hHH
Confidence 478999999999654 55666667777877 7755442 100000 000 000 067
Q ss_pred HHHHhhcCCCEEEEcCCccc---------HHHHHHHhCCCeE
Q 011765 103 AKLLQSLAPDWLLFDFAAYW---------LPARARELGIPSG 135 (478)
Q Consensus 103 ~~ll~~~~pD~vI~D~~~~~---------~~~~A~~lgIP~i 135 (478)
.+++++.+.|+||..+.... -..+|...+||++
T Consensus 53 ~~~i~~~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 53 MDLIKNGKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHHHTTSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred HHHHHcCCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 78888899999998753221 1357888899986
No 224
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=64.32 E-value=10 Score=33.42 Aligned_cols=45 Identities=7% Similarity=-0.141 Sum_probs=34.0
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLP 50 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 50 (478)
.+||++.-.++.|=+.-...+++.|.++||+|.++.++...+++.
T Consensus 5 ~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~~~~ 49 (196)
T PRK08305 5 GKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQTTDT 49 (196)
T ss_pred CCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHHHhh
Confidence 457777666655544447999999999999999999888765543
No 225
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=64.10 E-value=36 Score=29.59 Aligned_cols=106 Identities=16% Similarity=0.060 Sum_probs=53.8
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCe--EEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHK--IFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLP 84 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~--Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~ 84 (478)
|||+|+..+.. ..+..+.++|.+++|+ +.++.+.......... .....+....+. .. .
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~--~~~~~~~~~~~~----~~---------~-- 60 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITNPDKPRGRSR--AIKNGIPAQVAD----EK---------N-- 60 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHH--HHHTTHHEEEHH----GG---------G--
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEeccccccccccc--cccCCCCEEecc----cc---------C--
Confidence 78988855444 5567778899999997 5444433332211000 000112222221 00 0
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcc-cHHHHHHHhCCCeEEEec
Q 011765 85 YDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAY-WLPARARELGIPSGFFSI 139 (478)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~-~~~~~A~~lgIP~i~~~~ 139 (478)
........+.+.+.+++.+||++|.-.+.. ....+-+..+..++-+++
T Consensus 61 -------~~~~~~~~~~~~~~l~~~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHp 109 (181)
T PF00551_consen 61 -------FQPRSENDEELLELLESLNPDLIVVAGYGRILPKEFLSIPPYGIINIHP 109 (181)
T ss_dssp -------SSSHHHHHHHHHHHHHHTT-SEEEESS-SS---HHHHHHSTTSEEEEES
T ss_pred -------CCchHhhhhHHHHHHHhhccceeehhhhHHHhhhhhhhcccccEEEEee
Confidence 000122345677888899999998875532 233444556666676655
No 226
>PRK08506 replicative DNA helicase; Provisional
Probab=64.07 E-value=37 Score=34.65 Aligned_cols=42 Identities=17% Similarity=0.187 Sum_probs=35.7
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccC
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRL 49 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 49 (478)
=+++...|+.|-..-.+.+|....+.|+.|.|++.+...+.+
T Consensus 194 LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql 235 (472)
T PRK08506 194 LIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQL 235 (472)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHH
Confidence 356678889999999999999998889999999988776544
No 227
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=63.91 E-value=20 Score=32.62 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=17.8
Q ss_pred HHHHHHHHHhCCCeEEEEeCC
Q 011765 23 WLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 23 ~l~La~~L~~rGh~Vt~~~~~ 43 (478)
-.+||++|.++||+|+++...
T Consensus 29 G~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 29 GKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred HHHHHHHHHhCCCEEEEEECc
Confidence 367899999999999998744
No 228
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=62.37 E-value=16 Score=33.89 Aligned_cols=39 Identities=18% Similarity=-0.053 Sum_probs=28.9
Q ss_pred HHHHHHhhcCCCEEEEcCCcc------cHHHHHHHhCCCeEEEec
Q 011765 101 PMAKLLQSLAPDWLLFDFAAY------WLPARARELGIPSGFFSI 139 (478)
Q Consensus 101 ~l~~ll~~~~pD~vI~D~~~~------~~~~~A~~lgIP~i~~~~ 139 (478)
.|.+.+++..||+|++...+. -+..+|+.||+|++....
T Consensus 103 ~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~ 147 (256)
T PRK03359 103 ALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVS 147 (256)
T ss_pred HHHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEE
Confidence 444555566799999875332 467899999999998765
No 229
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=62.16 E-value=46 Score=32.84 Aligned_cols=35 Identities=11% Similarity=0.183 Sum_probs=28.2
Q ss_pred CCccEEEEec-CCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 4 NSKLQIAMFP-WLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 4 ~~~~~il~~~-~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
+..++|+++. .+..|. .+|+.|.++||+|+++...
T Consensus 96 ~~~~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 96 PDLRPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred cccceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCCC
Confidence 3458999987 676674 6899999999999998854
No 230
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=62.05 E-value=27 Score=33.42 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=24.4
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
|||+|+..+..+ +...++|.++||+|..+.+..
T Consensus 1 mkIvf~Gs~~~a-----~~~L~~L~~~~~~i~~Vvt~p 33 (313)
T TIGR00460 1 LRIVFFGTPTFS-----LPVLEELREDNFEVVGVVTQP 33 (313)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCcEEEEEcCC
Confidence 789998665433 667788888999998666543
No 231
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=61.92 E-value=20 Score=36.07 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=34.3
Q ss_pred EEEecCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCCccccC
Q 011765 9 IAMFPWLAFGHMIPWLELAKLIA-QKGHKIFFISTPRNIDRL 49 (478)
Q Consensus 9 il~~~~~~~gH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~~ 49 (478)
+++...|+.|-..-++.+|..++ +.|+.|.|++.+...+.+
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l 238 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQL 238 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHH
Confidence 56678889999999999998887 679999999988765544
No 232
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=61.07 E-value=19 Score=32.93 Aligned_cols=46 Identities=17% Similarity=0.089 Sum_probs=37.4
Q ss_pred CCccEEEEecC-CCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccC
Q 011765 4 NSKLQIAMFPW-LAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRL 49 (478)
Q Consensus 4 ~~~~~il~~~~-~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 49 (478)
+.+.|-.|+.. ++.|-..-...||-.|+.-+|.|.++++++....-
T Consensus 16 q~slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNlS 62 (323)
T KOG2825|consen 16 QTSLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNLS 62 (323)
T ss_pred cceeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcccchH
Confidence 45677777744 46699999999999999999999999998876543
No 233
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=60.91 E-value=8.4 Score=33.72 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=18.2
Q ss_pred HHHHHHHHHhCCCeEEEEeCCC
Q 011765 23 WLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 23 ~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
-..||+++..+|++||++..+.
T Consensus 32 G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 32 GAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp HHHHHHHHHHTT-EEEEEE-TT
T ss_pred HHHHHHHHHHCCCEEEEEecCc
Confidence 5789999999999999999985
No 234
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=60.73 E-value=9.8 Score=33.20 Aligned_cols=44 Identities=9% Similarity=0.067 Sum_probs=35.6
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPR 51 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~ 51 (478)
+||++.-.++.|=+. ...+.+.|+++|++|.++.++...+++..
T Consensus 2 k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~fi~~ 45 (182)
T PRK07313 2 KNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKFITP 45 (182)
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHHcCH
Confidence 577777666665554 89999999999999999999988777653
No 235
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=60.45 E-value=17 Score=32.30 Aligned_cols=40 Identities=13% Similarity=0.005 Sum_probs=35.9
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRN 45 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~ 45 (478)
+.||++.+.++..|-....-++..|..+|++|+++.....
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p 121 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVP 121 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCC
Confidence 5799999999999999999999999999999998875533
No 236
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=60.43 E-value=50 Score=31.32 Aligned_cols=53 Identities=15% Similarity=0.141 Sum_probs=39.5
Q ss_pred CCCceeeeeccChhhHHHHHHh----CCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcc
Q 011765 354 HDSVGGFLTHAGWSSVVEALQF----GMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVE 428 (478)
Q Consensus 354 ~~~~~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~ 428 (478)
.+++ +|+=||-||+.++++. ++|++++... .+|.. .+ ++.+++.++|++++++
T Consensus 62 ~~d~--vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G-------------~lGFl---~~----~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 62 VCDL--VIVVGGDGSLLGAARALARHNVPVLGINRG-------------RLGFL---TD----IRPDELEFKLAEVLDG 118 (295)
T ss_pred CCCE--EEEEeCcHHHHHHHHHhcCCCCCEEEEeCC-------------ccccc---cc----CCHHHHHHHHHHHHcC
Confidence 3455 9999999999999763 6788887762 13322 22 6789999999999984
No 237
>PRK13768 GTPase; Provisional
Probab=60.00 E-value=44 Score=30.86 Aligned_cols=39 Identities=8% Similarity=0.091 Sum_probs=32.0
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRN 45 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~ 45 (478)
+-+++...++.|-..-+.+++..|..+|+.|.++..++.
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPA 41 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence 345666677889999999999999999999999876553
No 238
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=59.45 E-value=9 Score=34.90 Aligned_cols=40 Identities=15% Similarity=0.128 Sum_probs=33.5
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccc
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNID 47 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 47 (478)
=+++...++.|...-...++....++|..|.|++.+...+
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~ 66 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSK 66 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHH
Confidence 4677788899999999999888888999999999876543
No 239
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=59.42 E-value=13 Score=35.57 Aligned_cols=44 Identities=14% Similarity=0.195 Sum_probs=33.4
Q ss_pred CCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCC
Q 011765 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLP 53 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g 53 (478)
+++|||+++-.++.| ..+|..|++.||+|++++... .+.+...|
T Consensus 3 ~~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~-~~~~~~~g 46 (313)
T PRK06249 3 SETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD-YEAVRENG 46 (313)
T ss_pred CcCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC-HHHHHhCC
Confidence 457999999888877 456788999999999998765 34444444
No 240
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=59.11 E-value=17 Score=34.74 Aligned_cols=35 Identities=14% Similarity=0.059 Sum_probs=31.6
Q ss_pred ecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCcc
Q 011765 12 FPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNI 46 (478)
Q Consensus 12 ~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (478)
++.++.|-.--.+.||++|++||..+-+++-..-.
T Consensus 55 ltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYgg 89 (336)
T COG1663 55 LTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYGG 89 (336)
T ss_pred EEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcCC
Confidence 57889999999999999999999999999877655
No 241
>PRK06988 putative formyltransferase; Provisional
Probab=58.88 E-value=35 Score=32.70 Aligned_cols=34 Identities=12% Similarity=0.251 Sum_probs=24.8
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
+|||+|+..+. ..+...++|.++||+|..+.+..
T Consensus 2 ~mkIvf~Gs~~-----~a~~~L~~L~~~~~~i~~Vvt~~ 35 (312)
T PRK06988 2 KPRAVVFAYHN-----VGVRCLQVLLARGVDVALVVTHE 35 (312)
T ss_pred CcEEEEEeCcH-----HHHHHHHHHHhCCCCEEEEEcCC
Confidence 58999986554 34556778888899998776654
No 242
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=58.74 E-value=1.1e+02 Score=27.01 Aligned_cols=99 Identities=9% Similarity=-0.016 Sum_probs=60.8
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCC----CCCCCeEEEEecCCCCCCCCCCccccCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQ----NLASMIQFVKISLPHVDNLRENAEATID 82 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~----~~~~~i~~~~i~~~~~~~l~~~~~~~~~ 82 (478)
-.|.+++..+.|-....+.+|-+.+.+|+.|.++-.-.... ..|+ ...+++++.... .++.- ...
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~---~~GE~~~l~~l~~v~~~~~g----~~~~~----~~~ 91 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAW---STGERNLLEFGGGVEFHVMG----TGFTW----ETQ 91 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCC---ccCHHHHHhcCCCcEEEECC----CCCcc----cCC
Confidence 47888999999999999999999999999999876433220 1121 112457777665 22110 001
Q ss_pred CChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCc
Q 011765 83 LPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAA 120 (478)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~ 120 (478)
.. ..-............+.+.+-++|+||-|-..
T Consensus 92 ~~----~e~~~~~~~~~~~a~~~l~~~~ydlvVLDEi~ 125 (191)
T PRK05986 92 DR----ERDIAAAREGWEEAKRMLADESYDLVVLDELT 125 (191)
T ss_pred Cc----HHHHHHHHHHHHHHHHHHhCCCCCEEEEehhh
Confidence 11 11122233334455666777899999999654
No 243
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=58.59 E-value=17 Score=31.82 Aligned_cols=99 Identities=18% Similarity=0.292 Sum_probs=47.9
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCcc-ccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCCh
Q 011765 9 IAMFPWLAFGHMIPWLELAKLIAQK--GHKIFFISTPRNI-DRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPY 85 (478)
Q Consensus 9 il~~~~~~~gH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~-~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~ 85 (478)
++.+=-.+.|-++-...|+++|.++ |+.|.+-++.... +.+.+.. .+.+...-+|+ |.
T Consensus 23 ~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~---~~~v~~~~~P~--------------D~-- 83 (186)
T PF04413_consen 23 LIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLL---PDRVDVQYLPL--------------DF-- 83 (186)
T ss_dssp -EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG----GGG-SEEE-----------------SS--
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhC---CCCeEEEEeCc--------------cC--
Confidence 3444445679999999999999997 8888887764332 2222210 01122222331 11
Q ss_pred hHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCccc--HHHHHHHhCCCeEEEec
Q 011765 86 DEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYW--LPARARELGIPSGFFSI 139 (478)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~--~~~~A~~lgIP~i~~~~ 139 (478)
.......++.++||++|.--...| -+..|++.|||++.+..
T Consensus 84 -------------~~~~~rfl~~~~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 84 -------------PWAVRRFLDHWRPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp -------------HHHHHHHHHHH--SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred -------------HHHHHHHHHHhCCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 124556677889999875544444 34678889999998844
No 244
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=58.37 E-value=1.1e+02 Score=25.51 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=21.3
Q ss_pred eeeeeccCh------hhHHHHHHhCCcEecccc
Q 011765 358 GGFLTHAGW------SSVVEALQFGMPLIVLTC 384 (478)
Q Consensus 358 ~~~ItHgG~------~s~~eal~~GvP~l~~P~ 384 (478)
.++++|.|- +.+.+|...++|+|++.-
T Consensus 61 ~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 61 GVVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred EEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 348888663 478899999999999963
No 245
>PRK05748 replicative DNA helicase; Provisional
Probab=58.33 E-value=56 Score=33.16 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=34.9
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCCccccC
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQ-KGHKIFFISTPRNIDRL 49 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~~ 49 (478)
=+++...|+.|-..-.+.+|...+. .|+.|.|++.+...+.+
T Consensus 205 livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l 247 (448)
T PRK05748 205 LIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESL 247 (448)
T ss_pred eEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHH
Confidence 3677788999999999999998874 59999999988776544
No 246
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=58.00 E-value=21 Score=31.55 Aligned_cols=43 Identities=12% Similarity=-0.043 Sum_probs=38.0
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccc
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNID 47 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 47 (478)
++.+|++.+.++..|-....-++..|..+|.+|++++.....+
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e 125 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPID 125 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHH
Confidence 3569999999999999999999999999999999998765544
No 247
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=57.41 E-value=19 Score=35.70 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=29.0
Q ss_pred EEEEe-cCCCccCHHHHHHHHHHHHhCCCeEE-EEeCCCc
Q 011765 8 QIAMF-PWLAFGHMIPWLELAKLIAQKGHKIF-FISTPRN 45 (478)
Q Consensus 8 ~il~~-~~~~~gH~~p~l~La~~L~~rGh~Vt-~~~~~~~ 45 (478)
+|++. +..+.|-..-++.|.++|++||++|- |=+.|.+
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPDY 41 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPDY 41 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCcccccccCCCc
Confidence 45554 55577999999999999999999997 3334444
No 248
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=57.36 E-value=18 Score=29.95 Aligned_cols=39 Identities=13% Similarity=0.088 Sum_probs=35.3
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
.+.||++.+.+.-||-...--+++.|+..|.+|.....-
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~ 49 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLF 49 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCc
Confidence 578999999998899999999999999999999986543
No 249
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.84 E-value=17 Score=33.82 Aligned_cols=51 Identities=6% Similarity=0.039 Sum_probs=37.7
Q ss_pred eeeeeccChhhHHHHHH------hCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcc
Q 011765 358 GGFLTHAGWSSVVEALQ------FGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVE 428 (478)
Q Consensus 358 ~~~ItHgG~~s~~eal~------~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~ 428 (478)
+++|+-||=||++.|++ .++|++++-.. .+|... + ++.+++.+.+++++++
T Consensus 37 Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~G-------------~lGFL~---~----~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 37 DIVISVGGDGTLLSAFHRYENQLDKVRFVGVHTG-------------HLGFYT---D----WRPFEVDKLVIALAKD 93 (265)
T ss_pred CEEEEECCcHHHHHHHHHhcccCCCCeEEEEeCC-------------Cceecc---c----CCHHHHHHHHHHHHcC
Confidence 44999999999999986 48898886531 123332 2 5778888999999883
No 250
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=56.72 E-value=16 Score=31.69 Aligned_cols=33 Identities=6% Similarity=0.251 Sum_probs=22.1
Q ss_pred cCCCceeeeeccChhhHHHHHHhCCcEecccccc
Q 011765 353 AHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYA 386 (478)
Q Consensus 353 ~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~ 386 (478)
.+..++.+|++||...+..... ++|+|-+|...
T Consensus 31 ~~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 31 ESEGADVIISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp TTTT-SEEEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred HhcCCeEEEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 4455555999999998888877 99999999753
No 251
>PRK07206 hypothetical protein; Provisional
Probab=55.99 E-value=42 Score=33.54 Aligned_cols=34 Identities=9% Similarity=0.024 Sum_probs=24.1
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRN 45 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~ 45 (478)
.+|+++-..+. ...++++++++|+++++++....
T Consensus 3 k~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~~ 36 (416)
T PRK07206 3 KKVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSCL 36 (416)
T ss_pred CeEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCCC
Confidence 35666654333 34689999999999988876643
No 252
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=55.96 E-value=38 Score=32.63 Aligned_cols=36 Identities=17% Similarity=0.116 Sum_probs=32.0
Q ss_pred ecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccc
Q 011765 12 FPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNID 47 (478)
Q Consensus 12 ~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 47 (478)
++.+++|-.--...|++.|.++|++|.+++-..-..
T Consensus 43 ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~~ 78 (326)
T PF02606_consen 43 LTVGGTGKTPLVIWLARLLQARGYRPAILSRGYGRK 78 (326)
T ss_pred cccCCCCchHHHHHHHHHHHhcCCceEEEcCCCCCC
Confidence 577899999999999999999999999999877654
No 253
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=55.71 E-value=22 Score=31.36 Aligned_cols=34 Identities=21% Similarity=0.080 Sum_probs=25.1
Q ss_pred cCCCEEEEcC--CcccHHHHHHHhCCCeEEEecchH
Q 011765 109 LAPDWLLFDF--AAYWLPARARELGIPSGFFSIFTA 142 (478)
Q Consensus 109 ~~pD~vI~D~--~~~~~~~~A~~lgIP~i~~~~~~~ 142 (478)
..||+||.-. ....++.=|.++|||.|.+..+.+
T Consensus 126 ~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn~ 161 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTNC 161 (193)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCCC
Confidence 3799997543 233567789999999999977553
No 254
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=55.65 E-value=22 Score=33.71 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=38.8
Q ss_pred CCCceeeeeccChhhHHHHHHh----CCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcc
Q 011765 354 HDSVGGFLTHAGWSSVVEALQF----GMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVE 428 (478)
Q Consensus 354 ~~~~~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~ 428 (478)
.+++ +|+-||-||+.++++. ++|++++-.. .+|... + ++.+++.++|.+++++
T Consensus 63 ~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn~G-------------~lGFL~---~----~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 63 RADL--AVVLGGDGTMLGIGRQLAPYGVPLIGINHG-------------RLGFIT---D----IPLDDMQETLPPMLAG 119 (291)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcCC-------------Cccccc---c----CCHHHHHHHHHHHHcC
Confidence 4455 9999999999999874 6788876531 123333 2 5778999999999884
No 255
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=55.64 E-value=53 Score=33.14 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=34.8
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCCccccC
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQ-KGHKIFFISTPRNIDRL 49 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~~ 49 (478)
=+++...|+.|-..-++.+|..++. .|+.|.|++.+...+.+
T Consensus 197 l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i 239 (434)
T TIGR00665 197 LIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQL 239 (434)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHH
Confidence 3566788899999999999998876 59999999988776544
No 256
>PLN02712 arogenate dehydrogenase
Probab=55.54 E-value=19 Score=38.55 Aligned_cols=38 Identities=26% Similarity=0.433 Sum_probs=28.5
Q ss_pred CCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCcc
Q 011765 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNI 46 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (478)
+++|+|.|+..+..| ..+|+.|.++||+|+.+......
T Consensus 50 ~~~~kIgIIG~G~mG-----~slA~~L~~~G~~V~~~dr~~~~ 87 (667)
T PLN02712 50 TTQLKIAIIGFGNYG-----QFLAKTLISQGHTVLAHSRSDHS 87 (667)
T ss_pred CCCCEEEEEccCHHH-----HHHHHHHHHCCCEEEEEeCCHHH
Confidence 457999999765444 36889999999999887765443
No 257
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=55.30 E-value=54 Score=30.41 Aligned_cols=39 Identities=15% Similarity=0.194 Sum_probs=33.4
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCcc
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNI 46 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (478)
=+++...|+.|-..-++.++...+++|..|.|++.+...
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPA 76 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCc
Confidence 457778889999999999999988899999999987543
No 258
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=55.04 E-value=21 Score=35.24 Aligned_cols=49 Identities=16% Similarity=0.173 Sum_probs=35.6
Q ss_pred HHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcc-------cHH---HHHHHhCCCeEEEe
Q 011765 90 YLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAY-------WLP---ARARELGIPSGFFS 138 (478)
Q Consensus 90 ~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~-------~~~---~~A~~lgIP~i~~~ 138 (478)
++.+..++..+.+.+++++.+||++|+.+.+- |+. .+.++++||.++-.
T Consensus 56 Yf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 56 FFGENLEEAKAKVLEMIKGANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred hhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 45555666677889999999999999997332 221 24577999999654
No 259
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=54.87 E-value=35 Score=37.09 Aligned_cols=113 Identities=13% Similarity=0.120 Sum_probs=68.1
Q ss_pred EEeccCChhh---hhcCCCceeeee---ccCh-hhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcc
Q 011765 341 VYTSWAPQLA---ILAHDSVGGFLT---HAGW-SSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFF 413 (478)
Q Consensus 341 ~~~~~vpq~~---vL~~~~~~~~It---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~ 413 (478)
++..++++.+ +++.+++ |+. .-|+ .++.||+++|+|-.++|...+--.-+.-+ .-|+.++..
T Consensus 345 ~~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l---~~~llv~P~------ 413 (726)
T PRK14501 345 YFYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAEL---AEALLVNPN------ 413 (726)
T ss_pred EEeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhHHh---CcCeEECCC------
Confidence 3556788765 5566777 664 3365 58899999977522222211111111111 126666664
Q ss_pred cHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHhcc
Q 011765 414 TRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLKNHR 466 (478)
Q Consensus 414 ~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 466 (478)
+.++++++|.++|+.. .++.+++.+++.+.+. ......-++.+++.+.+..
T Consensus 414 d~~~la~ai~~~l~~~-~~e~~~r~~~~~~~v~-~~~~~~w~~~~l~~l~~~~ 464 (726)
T PRK14501 414 DIEGIAAAIKRALEMP-EEEQRERMQAMQERLR-RYDVHKWASDFLDELREAA 464 (726)
T ss_pred CHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHH
Confidence 7899999999999721 2456666677766653 4556677777877776553
No 260
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=54.74 E-value=21 Score=35.16 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=35.5
Q ss_pred HHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcc-------cHH---HHHHHhCCCeEEEe
Q 011765 90 YLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAY-------WLP---ARARELGIPSGFFS 138 (478)
Q Consensus 90 ~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~-------~~~---~~A~~lgIP~i~~~ 138 (478)
++.+..+...+.+.+++++.+||++|+.+.+- |+. .+.++++||.++-.
T Consensus 56 Yf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 56 FFGENLEEAVARVLEMLKDKEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred hhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 45555566677889999999999999997332 221 24578999999654
No 261
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=54.54 E-value=22 Score=28.63 Aligned_cols=39 Identities=13% Similarity=0.081 Sum_probs=34.9
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCcc
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNI 46 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (478)
||++.+.++..|-.-..-++.-|...|++|++.......
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~ 39 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTP 39 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCH
Confidence 688999999999999999999999999999998875443
No 262
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=54.54 E-value=69 Score=32.85 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=25.5
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQK--GHKIFFIST 42 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~r--Gh~Vt~~~~ 42 (478)
||||++..++..| +|+.+|++. |++|..+-.
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g 33 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSS 33 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEEC
Confidence 7999998888887 578888876 899888754
No 263
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=53.87 E-value=48 Score=29.38 Aligned_cols=35 Identities=9% Similarity=-0.049 Sum_probs=23.0
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCC--CeEEEEeCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKG--HKIFFISTP 43 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rG--h~Vt~~~~~ 43 (478)
+|||+++..+.-+ -+.+|.+++.+.+ ++|.++.+.
T Consensus 1 m~ki~vl~sg~gs---~~~~ll~~~~~~~~~~~I~~vvs~ 37 (200)
T PRK05647 1 MKRIVVLASGNGS---NLQAIIDACAAGQLPAEIVAVISD 37 (200)
T ss_pred CceEEEEEcCCCh---hHHHHHHHHHcCCCCcEEEEEEec
Confidence 4899888776633 2446777787764 778765444
No 264
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=53.49 E-value=1.5e+02 Score=25.62 Aligned_cols=97 Identities=11% Similarity=0.020 Sum_probs=56.8
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCcc----c--cCCCCCCCCCCCeEEEEecCCCCCCCCCCccc
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNI----D--RLPRLPQNLASMIQFVKISLPHVDNLRENAEA 79 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~----~--~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~ 79 (478)
+--|.+++..+.|-..-.+.+|-+.+.+|+.|.++-.-... + .++.. ++++.... .++. .
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~------~~~~~~~g----~g~~----~ 70 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPH------GVEFQVMG----TGFT----W 70 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhc------CcEEEECC----CCCe----e
Confidence 34677788899999999999999999999999766322111 1 11111 36666654 2211 0
Q ss_pred cCCCChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCc
Q 011765 80 TIDLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAA 120 (478)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~ 120 (478)
...... .-............+.+.+.++|+||-|-..
T Consensus 71 ~~~~~~----~~~~~~~~~~~~a~~~l~~~~~DlvVLDEi~ 107 (173)
T TIGR00708 71 ETQNRE----ADTAIAKAAWQHAKEMLADPELDLVLLDELT 107 (173)
T ss_pred cCCCcH----HHHHHHHHHHHHHHHHHhcCCCCEEEehhhH
Confidence 001111 1112223333455566667799999999654
No 265
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=53.47 E-value=65 Score=32.48 Aligned_cols=86 Identities=19% Similarity=0.129 Sum_probs=54.6
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChh
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYD 86 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~ 86 (478)
.|+.+.. .-.....+++.|.+-|-+|..+......+.... ++ . +.....+
T Consensus 312 krvai~~-----~~~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~-------------~~----~----~~~~~~D---- 361 (432)
T TIGR01285 312 KKVAIAA-----EPDLLAAWATFFTSMGAQIVAAVTTTGSPLLQK-------------LP----V----ETVVIGD---- 361 (432)
T ss_pred CEEEEEc-----CHHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHh-------------CC----c----CcEEeCC----
Confidence 4666554 234678888889889999887776654321111 11 0 0000000
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEE
Q 011765 87 EVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFF 137 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~ 137 (478)
. ..+.+++++.+||++|... .+..+|+++|||++.+
T Consensus 362 -----------~-~~l~~~i~~~~~dliig~s---~~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 362 -----------L-EDLEDLACAAGADLLITNS---HGRALAQRLALPLVRA 397 (432)
T ss_pred -----------H-HHHHHHHhhcCCCEEEECc---chHHHHHHcCCCEEEe
Confidence 0 2456677788999999885 4578999999999976
No 266
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=52.85 E-value=13 Score=34.78 Aligned_cols=38 Identities=18% Similarity=0.399 Sum_probs=32.4
Q ss_pred cChhhH--HHHHHhCCcEeccccccchhhHHHH-HhhcCeE
Q 011765 364 AGWSSV--VEALQFGMPLIVLTCYADQGLNAKL-LEEKQIV 401 (478)
Q Consensus 364 gG~~s~--~eal~~GvP~l~~P~~~DQ~~na~~-v~~~g~G 401 (478)
||||++ .-|-.+||-++++-+...|..+++. +.+.|+-
T Consensus 81 CGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~ 121 (283)
T COG2230 81 CGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE 121 (283)
T ss_pred CChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC
Confidence 578754 5567779999999999999999998 7888998
No 267
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=52.59 E-value=81 Score=30.78 Aligned_cols=28 Identities=18% Similarity=0.408 Sum_probs=23.6
Q ss_pred CCCceeeeeccChhh---HHHHHHhCCcEeccc
Q 011765 354 HDSVGGFLTHAGWSS---VVEALQFGMPLIVLT 383 (478)
Q Consensus 354 ~~~~~~~ItHgG~~s---~~eal~~GvP~l~~P 383 (478)
++++ +|++||+=| +..|...|+|+++.-
T Consensus 91 kPdv--vi~~Ggy~s~p~~~aa~~~~~p~~i~e 121 (352)
T PRK12446 91 KPDV--IFSKGGFVSVPVVIGGWLNRVPVLLHE 121 (352)
T ss_pred CCCE--EEecCchhhHHHHHHHHHcCCCEEEEC
Confidence 3666 999999986 899999999998743
No 268
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=52.57 E-value=1.7e+02 Score=25.96 Aligned_cols=151 Identities=13% Similarity=0.059 Sum_probs=77.8
Q ss_pred CCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCC
Q 011765 276 KGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHD 355 (478)
Q Consensus 276 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~ 355 (478)
++++++|..|.++ ...++.|...+..+.++ ... +.+.+.+......+.......+..-+..+
T Consensus 10 ~k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VI-s~~----------~~~~l~~l~~~~~i~~~~~~~~~~~l~~a 71 (202)
T PRK06718 10 NKRVVIVGGGKVA-------GRRAITLLKYGAHIVVI-SPE----------LTENLVKLVEEGKIRWKQKEFEPSDIVDA 71 (202)
T ss_pred CCEEEEECCCHHH-------HHHHHHHHHCCCeEEEE-cCC----------CCHHHHHHHhCCCEEEEecCCChhhcCCc
Confidence 3568888877665 33445555567665443 321 11122111112234333333445556666
Q ss_pred CceeeeeccChhhHHHHHH----hCCcEeccccccc-hhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccc
Q 011765 356 SVGGFLTHAGWSSVVEALQ----FGMPLIVLTCYAD-QGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEK 430 (478)
Q Consensus 356 ~~~~~ItHgG~~s~~eal~----~GvP~l~~P~~~D-Q~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~ 430 (478)
++ +|.--+.-.+.+.++ .|+++-++-.... -+..-..+.+-++-+.+....++. .-+..|++.|+.++.. .
T Consensus 72 dl--ViaaT~d~elN~~i~~~a~~~~lvn~~d~~~~~~f~~Pa~~~~g~l~iaIsT~G~sP-~la~~lr~~ie~~~~~-~ 147 (202)
T PRK06718 72 FL--VIAATNDPRVNEQVKEDLPENALFNVITDAESGNVVFPSALHRGKLTISVSTDGASP-KLAKKIRDELEALYDE-S 147 (202)
T ss_pred eE--EEEcCCCHHHHHHHHHHHHhCCcEEECCCCccCeEEEeeEEEcCCeEEEEECCCCCh-HHHHHHHHHHHHHcch-h
Confidence 66 888777665555544 5666544321100 122223333334555554443111 3446688888887742 2
Q ss_pred hHHHHHHHHHHHHHhccc
Q 011765 431 GQIYRDKAKEMKGLFGDK 448 (478)
Q Consensus 431 ~~~~~~~a~~~~~~~~~~ 448 (478)
...+.+.+.++++.++..
T Consensus 148 ~~~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 148 YESYIDFLYECRQKIKEL 165 (202)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 467788888888887643
No 269
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=52.36 E-value=19 Score=31.99 Aligned_cols=38 Identities=18% Similarity=0.114 Sum_probs=32.1
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
|-|++..+|+.|-....-.||++|.+++|+|.-.+...
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy 39 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDY 39 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhh
Confidence 45677789999999999999999999999997765433
No 270
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=52.19 E-value=54 Score=33.30 Aligned_cols=115 Identities=17% Similarity=0.253 Sum_probs=56.0
Q ss_pred cCHHHHHHHHHHHHh--------CCCe----EEEEeCC---C----ccccCCCCCCCCCCCeEEEEecCCCCCCCCCCcc
Q 011765 18 GHMIPWLELAKLIAQ--------KGHK----IFFISTP---R----NIDRLPRLPQNLASMIQFVKISLPHVDNLRENAE 78 (478)
Q Consensus 18 gH~~p~l~La~~L~~--------rGh~----Vt~~~~~---~----~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~ 78 (478)
|.+.-.+.+|++|.+ .|.+ |.++|-- . +.+..++. ...++.....+||...+++-....
T Consensus 297 GQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t~~~q~le~~--~gt~~a~IlRvPF~~~~gi~~kwi 374 (550)
T PF00862_consen 297 GQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGTTCNQRLEKV--SGTENARILRVPFGPEKGILRKWI 374 (550)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCGGGTSSEEEE--TTESSEEEEEE-ESESTEEE-S--
T ss_pred CcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCCCcccccccc--CCCCCcEEEEecCCCCcchhhhcc
Confidence 566678888888864 3544 5555421 1 11111111 123568888888743322111100
Q ss_pred ccCCCChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcc--cHHHHHHHhCCCeEEEec
Q 011765 79 ATIDLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAY--WLPARARELGIPSGFFSI 139 (478)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~--~~~~~A~~lgIP~i~~~~ 139 (478)
. -.+.|.++....+.....+.+.+ ..+||+|+...... .|.++++++|||.+.+..
T Consensus 375 s----rf~lWPyLe~fa~d~~~~i~~e~-~~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaH 432 (550)
T PF00862_consen 375 S----RFDLWPYLEEFADDAEREILAEL-QGKPDLIIGNYSDGNLVASLLSRKLGVTQCFIAH 432 (550)
T ss_dssp -----GGG-GGGHHHHHHHHHHHHHHHH-TS--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-S
T ss_pred c----hhhchhhHHHHHHHHHHHHHHHh-CCCCcEEEeccCcchHHHHHHHhhcCCceehhhh
Confidence 0 11333455544444433333322 35799999875332 467889999999998855
No 271
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=51.82 E-value=26 Score=31.18 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=18.6
Q ss_pred cEEEEecCCCcc--CHHHHHHHHHHHHh
Q 011765 7 LQIAMFPWLAFG--HMIPWLELAKLIAQ 32 (478)
Q Consensus 7 ~~il~~~~~~~g--H~~p~l~La~~L~~ 32 (478)
||||+..|+-.| -.||.-.+++.|..
T Consensus 1 m~ILvTGFgpF~~~~~NpS~~~v~~L~~ 28 (202)
T PF01470_consen 1 MRILVTGFGPFGGVPVNPSWELVKRLPG 28 (202)
T ss_dssp EEEEEEEE-S-TT-SS-HHHHHHHHHTT
T ss_pred CEEEEecccCCCCCCCChHHHHHHHcCC
Confidence 789887666443 47999999999975
No 272
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=51.79 E-value=23 Score=31.62 Aligned_cols=37 Identities=16% Similarity=0.076 Sum_probs=30.2
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 011765 9 IAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRN 45 (478)
Q Consensus 9 il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~ 45 (478)
+++-.--+.|--.-+..++.-+...||.|++++++..
T Consensus 31 ~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T 67 (235)
T COG2874 31 ILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELT 67 (235)
T ss_pred EEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechh
Confidence 3444555778888899999999999999999998854
No 273
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.75 E-value=24 Score=33.28 Aligned_cols=53 Identities=6% Similarity=0.058 Sum_probs=37.9
Q ss_pred CCCceeeeeccChhhHHHHHHh----CCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcc
Q 011765 354 HDSVGGFLTHAGWSSVVEALQF----GMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVE 428 (478)
Q Consensus 354 ~~~~~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~ 428 (478)
.+++ +|+-||-||++.+++. ++|++++-... +|.. .+ ++.+++.+++++++++
T Consensus 64 ~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN~G~-------------lGFL---t~----~~~~~~~~~l~~i~~g 120 (287)
T PRK14077 64 ISDF--LISLGGDGTLISLCRKAAEYDKFVLGIHAGH-------------LGFL---TD----ITVDEAEKFFQAFFQG 120 (287)
T ss_pred CCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEeCCC-------------cccC---Cc----CCHHHHHHHHHHHHcC
Confidence 3455 9999999999988663 77888764321 2322 22 5788899999999884
No 274
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=51.72 E-value=19 Score=36.92 Aligned_cols=43 Identities=7% Similarity=-0.010 Sum_probs=37.3
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCC
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLP 50 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 50 (478)
=+++...|+.|-..-.+.++.+.+++|..|.|++.++..+.+.
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~ 307 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLL 307 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHH
Confidence 5678888899999999999999999999999999887765443
No 275
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=51.44 E-value=1.3e+02 Score=26.56 Aligned_cols=130 Identities=16% Similarity=0.123 Sum_probs=75.0
Q ss_pred eEEEEeCcccCCCHHHHH-HHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhh-cCCC
Q 011765 279 VVYVAFGSEAKPSQEELT-EIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAIL-AHDS 356 (478)
Q Consensus 279 ~v~vs~Gs~~~~~~~~~~-~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL-~~~~ 356 (478)
..++...... +.+.+. .+.+.+.+.+..++..-+ -..-+.+.|.++...+ +| -||+
T Consensus 53 t~~~~~k~~~--~r~~~d~~l~~~l~~~~~dlvvLAG--------yMrIL~~~fl~~~~gr------------IlNIHPS 110 (200)
T COG0299 53 TVVLDRKEFP--SREAFDRALVEALDEYGPDLVVLAG--------YMRILGPEFLSRFEGR------------ILNIHPS 110 (200)
T ss_pred EEEeccccCC--CHHHHHHHHHHHHHhcCCCEEEEcc--------hHHHcCHHHHHHhhcc------------eEecCcc
Confidence 4554444333 444444 488888888888776544 2344556555554321 22 2788
Q ss_pred ceeeeeccChhhHHHHHHhCCcEecccccc--chhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHH
Q 011765 357 VGGFLTHAGWSSVVEALQFGMPLIVLTCYA--DQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIY 434 (478)
Q Consensus 357 ~~~~ItHgG~~s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~ 434 (478)
+ .=.++|..+..+|+.+|+.+-++-.++ +..+-.-.+.+ ..+-+...+ |.++|++.|.+ .+ ..-|
T Consensus 111 L--LP~f~G~h~~~~A~~aG~k~sG~TVH~V~e~vD~GpII~Q--~~Vpv~~~D-----t~etl~~RV~~-~E---h~ly 177 (200)
T COG0299 111 L--LPAFPGLHAHEQALEAGVKVSGCTVHFVTEGVDTGPIIAQ--AAVPVLPGD-----TAETLEARVLE-QE---HRLY 177 (200)
T ss_pred c--ccCCCCchHHHHHHHcCCCccCcEEEEEccCCCCCCeEEE--EeeeecCCC-----CHHHHHHHHHH-HH---HHHH
Confidence 8 889999999999999999987766442 22222211111 122222222 77777777755 33 3455
Q ss_pred HHHHHHHHH
Q 011765 435 RDKAKEMKG 443 (478)
Q Consensus 435 ~~~a~~~~~ 443 (478)
-.-++.+.+
T Consensus 178 p~~v~~~~~ 186 (200)
T COG0299 178 PLAVKLLAE 186 (200)
T ss_pred HHHHHHHHh
Confidence 555555544
No 276
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=51.42 E-value=86 Score=31.54 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=35.2
Q ss_pred EEEEecCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCCcccc
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIA-QKGHKIFFISTPRNIDR 48 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~ 48 (478)
-|+++..++.|-..-...||..|. ++|..|.+++.+.++..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~ 142 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA 142 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH
Confidence 456778889999999999999997 58999999999987653
No 277
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.30 E-value=27 Score=33.26 Aligned_cols=51 Identities=14% Similarity=0.156 Sum_probs=38.9
Q ss_pred eeeeeccChhhHHHHHHh----CCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcc
Q 011765 358 GGFLTHAGWSSVVEALQF----GMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVE 428 (478)
Q Consensus 358 ~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~ 428 (478)
+++|+=||-||++.|.+. ++|++++.... +|...+ ++.+++.+++++++++
T Consensus 74 D~vi~lGGDGT~L~aar~~~~~~~PilGIN~G~-------------lGFL~~-------~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 74 ELVLVLGGDGTILRAAELARAADVPVLGVNLGH-------------VGFLAE-------AEAEDLDEAVERVVDR 128 (306)
T ss_pred CEEEEEcCCHHHHHHHHHhccCCCcEEEEecCC-------------Cceecc-------CCHHHHHHHHHHHHcC
Confidence 449999999999999764 78998876522 333332 5778899999999984
No 278
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=50.89 E-value=86 Score=29.28 Aligned_cols=23 Identities=13% Similarity=0.258 Sum_probs=18.7
Q ss_pred HHHHHHHHhCCCeEEEEeCCCcc
Q 011765 24 LELAKLIAQKGHKIFFISTPRNI 46 (478)
Q Consensus 24 l~La~~L~~rGh~Vt~~~~~~~~ 46 (478)
..|...|.+.||+||+++-....
T Consensus 12 ~~L~~~L~~~gh~v~iltR~~~~ 34 (297)
T COG1090 12 RALTARLRKGGHQVTILTRRPPK 34 (297)
T ss_pred HHHHHHHHhCCCeEEEEEcCCcc
Confidence 46788999999999999965543
No 279
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=50.72 E-value=14 Score=32.28 Aligned_cols=45 Identities=11% Similarity=0.026 Sum_probs=36.6
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCCccccCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQ-KGHKIFFISTPRNIDRLPR 51 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~~~~ 51 (478)
++||++.-.++-| .+=...+++.|.+ .||+|.++.++...+++..
T Consensus 1 ~k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~~ 46 (185)
T PRK06029 1 MKRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLAH 46 (185)
T ss_pred CCEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHHH
Confidence 3578777777666 6669999999999 5999999999988877654
No 280
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=50.59 E-value=20 Score=34.38 Aligned_cols=34 Identities=26% Similarity=0.285 Sum_probs=25.5
Q ss_pred CCCEEEE-cCC-cccHHHHHHHhCCCeEEEecchHH
Q 011765 110 APDWLLF-DFA-AYWLPARARELGIPSGFFSIFTAA 143 (478)
Q Consensus 110 ~pD~vI~-D~~-~~~~~~~A~~lgIP~i~~~~~~~~ 143 (478)
.||+||. |+. ...++.=|.++|||+|.+..+++.
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~d 187 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNCD 187 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCCC
Confidence 6999864 543 335777899999999999776653
No 281
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=50.48 E-value=28 Score=32.91 Aligned_cols=40 Identities=15% Similarity=0.280 Sum_probs=35.7
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCcc
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNI 46 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (478)
|||.++.=++.|-..-..+||..|+++|++|.++--++-.
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~ 40 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKH 40 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 7899999999999999999999999999999988766543
No 282
>PLN02470 acetolactate synthase
Probab=50.45 E-value=81 Score=33.25 Aligned_cols=28 Identities=29% Similarity=0.485 Sum_probs=23.2
Q ss_pred CceeeeeccCh------hhHHHHHHhCCcEeccc
Q 011765 356 SVGGFLTHAGW------SSVVEALQFGMPLIVLT 383 (478)
Q Consensus 356 ~~~~~ItHgG~------~s~~eal~~GvP~l~~P 383 (478)
.++++++|.|- +.+.+|...++|||++.
T Consensus 76 ~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 76 KVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred CCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 45558898885 48899999999999995
No 283
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=50.37 E-value=28 Score=30.71 Aligned_cols=39 Identities=15% Similarity=0.166 Sum_probs=31.2
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
++||.+=..|+.|-.+.|+.=|+.|+++|.+|++..-+.
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~vet 43 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVET 43 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecC
Confidence 689999999999999999999999999999999866543
No 284
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=50.33 E-value=49 Score=32.58 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=32.7
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccc
Q 011765 9 IAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNID 47 (478)
Q Consensus 9 il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 47 (478)
+++...|+.|--.-++.+|..+.++|..|.|++.++..+
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~ 123 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPE 123 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHH
Confidence 466677888999999999999999999999998875443
No 285
>PRK08006 replicative DNA helicase; Provisional
Probab=50.24 E-value=84 Score=32.11 Aligned_cols=42 Identities=12% Similarity=0.118 Sum_probs=34.5
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCCccccC
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQ-KGHKIFFISTPRNIDRL 49 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~~ 49 (478)
=|++...|+.|-..-.+.+|...+. .|+.|.|++-+...+.+
T Consensus 226 LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql 268 (471)
T PRK08006 226 LIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQI 268 (471)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 3566788999999999999998874 59999999988766543
No 286
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=50.04 E-value=1.1e+02 Score=25.52 Aligned_cols=100 Identities=13% Similarity=0.046 Sum_probs=63.6
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCccccCCCC-CCCCCCCeEEEEecCCCCCCCCCCccccCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQK--GHKIFFISTPRNIDRLPRL-PQNLASMIQFVKISLPHVDNLRENAEATID 82 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~-g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~ 82 (478)
+|+|++.. ..++=.-++.+|+.|.+. |+++ ++++...+.+++. | +.+..+- .+ +.
T Consensus 4 ~~~v~lsv--~d~dK~~l~~~a~~l~~ll~Gf~l--~AT~gTa~~L~~~~G------i~v~~vi----~~-~~------- 61 (142)
T PRK05234 4 RKRIALIA--HDHKKDDLVAWVKAHKDLLEQHEL--YATGTTGGLIQEATG------LDVTRLL----SG-PL------- 61 (142)
T ss_pred CcEEEEEE--eccchHHHHHHHHHHHHHhcCCEE--EEeChHHHHHHhccC------CeeEEEE----cC-CC-------
Confidence 57777765 345567788999999999 9995 4555666666665 6 6555441 11 00
Q ss_pred CChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcC--Ccc--------cHHHHHHHhCCCeEEEecch
Q 011765 83 LPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDF--AAY--------WLPARARELGIPSGFFSIFT 141 (478)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~--~~~--------~~~~~A~~lgIP~i~~~~~~ 141 (478)
.-.+.+.+++++-+.|+||.-. ... .-...|-..+||++....+.
T Consensus 62 --------------gg~~~i~~~I~~g~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~l~tA 116 (142)
T PRK05234 62 --------------GGDQQIGALIAEGKIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATNRATA 116 (142)
T ss_pred --------------CCchhHHHHHHcCceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcCHHHH
Confidence 0013566777788999999833 221 11346888899999754433
No 287
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=49.83 E-value=95 Score=29.84 Aligned_cols=100 Identities=15% Similarity=0.132 Sum_probs=56.2
Q ss_pred ccEEEEecCCCcc-----CHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCcccc
Q 011765 6 KLQIAMFPWLAFG-----HMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEAT 80 (478)
Q Consensus 6 ~~~il~~~~~~~g-----H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~ 80 (478)
+.-|++.|..+.| ...-+..|++.|.++|.+|.+++++...+..+... + ..+ .. ....
T Consensus 174 ~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~-------~--~~~----~~----~~~l 236 (334)
T TIGR02195 174 RPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIE-------A--LLP----GE----LRNL 236 (334)
T ss_pred CCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHH-------H--hCC----cc----cccC
Confidence 3456666655333 23358899999998899999988876554333221 0 000 00 0000
Q ss_pred CCCChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEEec
Q 011765 81 IDLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFFSI 139 (478)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~ 139 (478)
.. ..-...+..+++ +.|++|+.- .+.+.+|..+|+|.|.++.
T Consensus 237 ~g-------------~~sL~el~ali~--~a~l~I~~D--SGp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 237 AG-------------ETSLDEAVDLIA--LAKAVVTND--SGLMHVAAALNRPLVALYG 278 (334)
T ss_pred CC-------------CCCHHHHHHHHH--hCCEEEeeC--CHHHHHHHHcCCCEEEEEC
Confidence 00 000113333333 558888653 3467899999999998854
No 288
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=49.75 E-value=1.2e+02 Score=29.39 Aligned_cols=95 Identities=19% Similarity=0.221 Sum_probs=62.4
Q ss_pred CChhhhh-cCCCceeeeecc---Chh-hHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHH
Q 011765 346 APQLAIL-AHDSVGGFLTHA---GWS-SVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAE 420 (478)
Q Consensus 346 vpq~~vL-~~~~~~~~ItHg---G~~-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~ 420 (478)
.+.-..| .+.++ +|+|= |.| --.|+|+-|-|.|- |+..+.+ +|...+.. +..+=.+
T Consensus 261 ~~~p~fla~~tD~--VvSHqWeN~lNYlY~daLyggYPLVH---------NS~~l~d--~GYYY~~f------D~~~G~r 321 (364)
T PF10933_consen 261 FDFPDFLAQHTDA--VVSHQWENPLNYLYYDALYGGYPLVH---------NSPLLKD--VGYYYPDF------DAFEGAR 321 (364)
T ss_pred cChHHHHHhCCCE--EEeccccchhhHHHHHHHhcCCCccc---------Ccchhcc--cCcCCCCc------cHHHHHH
Confidence 3443333 35677 99994 333 56799999999986 7777775 88888875 4555555
Q ss_pred HHHHHhc--ccchHHHHHHHHHHHHHhcccCChHHHHHHHHHH
Q 011765 421 SLRLVLV--EEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNY 461 (478)
Q Consensus 421 ~i~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~ 461 (478)
++.+++. +..-++|+++++++=..+.-. ....++...+.
T Consensus 322 ~L~~A~~~HD~~~~~Y~~ra~~~l~~~~p~--n~~nv~~y~~~ 362 (364)
T PF10933_consen 322 QLLRAIREHDADLDAYRARARRLLDRLSPE--NPANVRAYEAR 362 (364)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHhhCCC--CHHHHHHHHHh
Confidence 5555554 222478999999988876433 34455544443
No 289
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=49.47 E-value=34 Score=30.71 Aligned_cols=43 Identities=16% Similarity=0.079 Sum_probs=37.9
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccc
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNID 47 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 47 (478)
++.||++.+.++..|-....-++..|..+|++|++++.....+
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e 129 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIE 129 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHH
Confidence 4679999999999999999999999999999999998664433
No 290
>PRK11823 DNA repair protein RadA; Provisional
Probab=49.18 E-value=27 Score=35.41 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=34.6
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCcccc
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDR 48 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 48 (478)
=+++...|+.|-..-++.++..+.++|+.|.|++.++..+.
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~q 122 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQ 122 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHH
Confidence 45677888999999999999999989999999998765543
No 291
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=49.06 E-value=35 Score=27.99 Aligned_cols=39 Identities=13% Similarity=-0.022 Sum_probs=31.3
Q ss_pred ccEEEEecCCCc-cCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 6 KLQIAMFPWLAF-GHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 6 ~~~il~~~~~~~-gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
.+|+.++-+.+. --++|..-++...+..|++|+++.+--
T Consensus 2 ~~k~~IIl~SG~~dk~~~a~iias~A~A~G~EV~VF~Tfw 41 (137)
T COG2210 2 DKKLGIILASGTLDKAYAALIIASGAAAMGYEVTVFFTFW 41 (137)
T ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeHH
Confidence 356766655544 889999999999999999999888743
No 292
>PLN02712 arogenate dehydrogenase
Probab=48.98 E-value=24 Score=37.69 Aligned_cols=36 Identities=36% Similarity=0.550 Sum_probs=27.8
Q ss_pred CCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
.++|+|.|+..+..|. .+|+.|++.||+|+++....
T Consensus 367 ~~~~kIgIIGlG~mG~-----slA~~L~~~G~~V~~~dr~~ 402 (667)
T PLN02712 367 GSKLKIAIVGFGNFGQ-----FLAKTMVKQGHTVLAYSRSD 402 (667)
T ss_pred CCCCEEEEEecCHHHH-----HHHHHHHHCcCEEEEEECCh
Confidence 3579999997655443 78899999999999877653
No 293
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=48.96 E-value=49 Score=29.56 Aligned_cols=26 Identities=15% Similarity=0.400 Sum_probs=20.5
Q ss_pred cEEEEecCCCcc--CHHHHHHHHHHHHh
Q 011765 7 LQIAMFPWLAFG--HMIPWLELAKLIAQ 32 (478)
Q Consensus 7 ~~il~~~~~~~g--H~~p~l~La~~L~~ 32 (478)
||||+..|.-.| ..||...+++.|..
T Consensus 1 M~ILvTGF~PF~~~~~NPS~~~~~~L~~ 28 (208)
T PRK13194 1 MKVLVTGFEPFGGDKKNPTMDIVKALDG 28 (208)
T ss_pred CEEEEEeeCCCCCCCCCcHHHHHHhccc
Confidence 788887666543 58999999999965
No 294
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=48.91 E-value=1.7e+02 Score=24.86 Aligned_cols=99 Identities=16% Similarity=0.106 Sum_probs=51.9
Q ss_pred hhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEe
Q 011765 264 WRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYT 343 (478)
Q Consensus 264 ~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~ 343 (478)
-.++-++|...+ ..+++-|.. -......++..+.+-+++-++.... . .+.. ........
T Consensus 20 A~~lg~~La~~g---~~lv~Gg~~-----GlM~a~a~ga~~~gg~viGVlp~~l------~--~~~~-----~~~~~i~~ 78 (159)
T TIGR00725 20 AYRLGKELAKKG---HILINGGRT-----GVMEAVSKGAREAGGLVVGILPDED------F--AGNP-----YLTIKVKT 78 (159)
T ss_pred HHHHHHHHHHCC---CEEEcCCch-----hHHHHHHHHHHHCCCeEEEECChhh------c--cCCC-----CceEEEEC
Confidence 345666775543 556663322 3344455555556666666554221 0 0000 00112223
Q ss_pred cc-CChhhhhcC-CCceeeeeccChhhHHH---HHHhCCcEecccc
Q 011765 344 SW-APQLAILAH-DSVGGFLTHAGWSSVVE---ALQFGMPLIVLTC 384 (478)
Q Consensus 344 ~~-vpq~~vL~~-~~~~~~ItHgG~~s~~e---al~~GvP~l~~P~ 384 (478)
++ .+...++.. ++. .++-=||.||+.| ++.+++|+++++.
T Consensus 79 ~~~~~Rk~~m~~~sda-~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 79 GMNFARNFILVRSADV-VVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred CCcchHHHHHHHHCCE-EEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 33 345555543 443 4556688887765 5889999999884
No 295
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=48.86 E-value=45 Score=29.89 Aligned_cols=28 Identities=11% Similarity=0.125 Sum_probs=21.5
Q ss_pred ccEEEEecCCCcc--CHHHHHHHHHHHHhC
Q 011765 6 KLQIAMFPWLAFG--HMIPWLELAKLIAQK 33 (478)
Q Consensus 6 ~~~il~~~~~~~g--H~~p~l~La~~L~~r 33 (478)
+|+||+..|.-.| ..||.-.++++|...
T Consensus 1 m~~ILvTGF~PF~~~~~NPS~~~~~~L~~~ 30 (211)
T PRK13196 1 MPTLLLTGFEPFHTHPVNPSAQAAQALNGE 30 (211)
T ss_pred CCEEEEEeecCCCCCCCCcHHHHHHhcccc
Confidence 4789887666443 599999999999654
No 296
>PRK07004 replicative DNA helicase; Provisional
Probab=48.82 E-value=90 Score=31.79 Aligned_cols=41 Identities=15% Similarity=0.116 Sum_probs=34.3
Q ss_pred EEEecCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCCccccC
Q 011765 9 IAMFPWLAFGHMIPWLELAKLIAQ-KGHKIFFISTPRNIDRL 49 (478)
Q Consensus 9 il~~~~~~~gH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~~ 49 (478)
+++...|+.|-..-++.+|..++. .|+.|.|++-+...+.+
T Consensus 216 iviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql 257 (460)
T PRK07004 216 IIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQL 257 (460)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHH
Confidence 566788899999999999998864 69999999988776543
No 297
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=48.80 E-value=16 Score=30.98 Aligned_cols=32 Identities=28% Similarity=0.441 Sum_probs=25.6
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
||.++.-+..|+ ++|..|..+||+|++.+...
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 466666665554 78999999999999999875
No 298
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=48.77 E-value=1.7e+02 Score=24.88 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=22.0
Q ss_pred ceeeeeccCh------hhHHHHHHhCCcEeccc
Q 011765 357 VGGFLTHAGW------SSVVEALQFGMPLIVLT 383 (478)
Q Consensus 357 ~~~~ItHgG~------~s~~eal~~GvP~l~~P 383 (478)
..++++|.|- +.+.+|...++|||++.
T Consensus 64 ~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 3348888874 47899999999999996
No 299
>PRK00784 cobyric acid synthase; Provisional
Probab=48.66 E-value=1.7e+02 Score=30.12 Aligned_cols=35 Identities=11% Similarity=0.141 Sum_probs=27.7
Q ss_pred EEEEecC-CCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011765 8 QIAMFPW-LAFGHMIPWLELAKLIAQKGHKIFFIST 42 (478)
Q Consensus 8 ~il~~~~-~~~gH~~p~l~La~~L~~rGh~Vt~~~~ 42 (478)
.|++... ...|-..-+..|++.|+++|++|..+=+
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 3555544 3459999999999999999999987643
No 300
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=48.64 E-value=24 Score=30.86 Aligned_cols=40 Identities=8% Similarity=-0.030 Sum_probs=32.6
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccc
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNID 47 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 47 (478)
||++.-.++.|=+.-...+.++|.+.|++|+++.++....
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~~ 41 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQT 41 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHHH
Confidence 6777777777777666799999999999999988887654
No 301
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=48.51 E-value=2.9e+02 Score=27.49 Aligned_cols=95 Identities=14% Similarity=0.075 Sum_probs=52.5
Q ss_pred CCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEE-EeccCChhhhhc
Q 011765 275 EKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVV-YTSWAPQLAILA 353 (478)
Q Consensus 275 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~-~~~~vpq~~vL~ 353 (478)
.+||.|-+|+ .....--+..+.+.|++.++.++.-...+.+ +..-+ +-.+...+- +.+.-.. ++-.
T Consensus 183 ~~kp~I~iTm---fGvTTp~V~~~~~~Le~~G~Ev~VFHAtG~G------G~aME---~Li~~G~~~~VlDlTtt-El~d 249 (403)
T PF06792_consen 183 EDKPLIGITM---FGVTTPCVDAIRERLEEEGYEVLVFHATGTG------GRAME---RLIREGQFDGVLDLTTT-ELAD 249 (403)
T ss_pred CCCcEEEEEC---CCCcHHHHHHHHHHHHhcCCeEEEEcCCCCc------hHHHH---HHHHcCCcEEEEECcHH-HHHH
Confidence 4577888774 3234466777888888888886544332211 11111 111111111 2233232 1111
Q ss_pred CCCceeeeeccChhhHHHHHHhCCcEecccc
Q 011765 354 HDSVGGFLTHAGWSSVVEALQFGMPLIVLTC 384 (478)
Q Consensus 354 ~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~ 384 (478)
.+-.=|..+|-+-+..|...|+|+|+.|=
T Consensus 250 --~l~GGv~sagp~Rl~AA~~~GIP~Vvs~G 278 (403)
T PF06792_consen 250 --ELFGGVLSAGPDRLEAAARAGIPQVVSPG 278 (403)
T ss_pred --HHhCCCCCCCchHHHHHHHcCCCEEEecC
Confidence 11113677889999999999999999994
No 302
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.22 E-value=44 Score=31.71 Aligned_cols=53 Identities=15% Similarity=0.122 Sum_probs=39.8
Q ss_pred CCCceeeeeccChhhHHHHHH----hCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcc
Q 011765 354 HDSVGGFLTHAGWSSVVEALQ----FGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVE 428 (478)
Q Consensus 354 ~~~~~~~ItHgG~~s~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~ 428 (478)
.+++ +|+=||=||++.|.+ .++|++++-... +|...+ ++.+++.+++++++++
T Consensus 68 ~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G~-------------lGFL~~-------~~~~~~~~~l~~i~~g 124 (296)
T PRK04539 68 YCDL--VAVLGGDGTFLSVAREIAPRAVPIIGINQGH-------------LGFLTQ-------IPREYMTDKLLPVLEG 124 (296)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcccCCCEEEEecCC-------------CeEeec-------cCHHHHHHHHHHHHcC
Confidence 3555 999999999999975 378988875421 344432 5788999999999984
No 303
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.11 E-value=29 Score=32.87 Aligned_cols=53 Identities=9% Similarity=0.255 Sum_probs=39.3
Q ss_pred CCCceeeeeccChhhHHHHHHh----CCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcc
Q 011765 354 HDSVGGFLTHAGWSSVVEALQF----GMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVE 428 (478)
Q Consensus 354 ~~~~~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~ 428 (478)
.+++ +|+=||=||++.|.+. ++|++++-... +|... + ++.+++.+++++++++
T Consensus 64 ~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G~-------------lGFLt---~----~~~~~~~~~l~~i~~g 120 (292)
T PRK01911 64 SADM--VISIGGDGTFLRTATYVGNSNIPILGINTGR-------------LGFLA---T----VSKEEIEETIDELLNG 120 (292)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEecCC-------------CCccc---c----cCHHHHHHHHHHHHcC
Confidence 4555 9999999999999873 78988765432 23222 2 5788999999999984
No 304
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=46.95 E-value=31 Score=34.06 Aligned_cols=103 Identities=17% Similarity=0.172 Sum_probs=66.4
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChhH
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYDE 87 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~~ 87 (478)
=||+---|+-|--.=++.++..|+++| .|.|++.++..+.++-. ...+. ++. . +
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklR---------A~RL~------~~~--~---~----- 148 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLR---------ADRLG------LPT--N---N----- 148 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHH---------HHHhC------CCc--c---c-----
Confidence 466677888899999999999999999 99999999876654321 11111 000 0 0
Q ss_pred HHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcc------------------c---HHHHHHHhCCCeEEEec
Q 011765 88 VKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAY------------------W---LPARARELGIPSGFFSI 139 (478)
Q Consensus 88 ~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~------------------~---~~~~A~~lgIP~i~~~~ 139 (478)
+....+.-.+.+.+.+++.+||++|.|.... | -+.+|+..||+.+.+.+
T Consensus 149 ---l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGH 218 (456)
T COG1066 149 ---LYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGH 218 (456)
T ss_pred ---eEEehhcCHHHHHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 0011122234566667778999999996211 0 13467888999887744
No 305
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.84 E-value=29 Score=32.48 Aligned_cols=57 Identities=16% Similarity=0.158 Sum_probs=39.3
Q ss_pred hhhhcCCCceeeeeccChhhHHHHHH----hCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHH
Q 011765 349 LAILAHDSVGGFLTHAGWSSVVEALQ----FGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRL 424 (478)
Q Consensus 349 ~~vL~~~~~~~~ItHgG~~s~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ 424 (478)
.++...+++ +|+=||-||++.|.+ .++|++++-... +|...+ ++++++.+++.+
T Consensus 37 ~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn~G~-------------lGFL~~-------~~~~~~~~~l~~ 94 (272)
T PRK02231 37 EEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGINRGN-------------LGFLTD-------IDPKNAYEQLEA 94 (272)
T ss_pred HHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeCCC-------------Cccccc-------CCHHHHHHHHHH
Confidence 444444555 999999999998865 367888765421 343332 467788888888
Q ss_pred Hhc
Q 011765 425 VLV 427 (478)
Q Consensus 425 ll~ 427 (478)
+++
T Consensus 95 ~~~ 97 (272)
T PRK02231 95 CLE 97 (272)
T ss_pred HHh
Confidence 887
No 306
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=46.70 E-value=39 Score=27.50 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=25.3
Q ss_pred cEEEEe-cCCCccC--HHHHHHHHHHHHhCCCeE-EEEeCCCc
Q 011765 7 LQIAMF-PWLAFGH--MIPWLELAKLIAQKGHKI-FFISTPRN 45 (478)
Q Consensus 7 ~~il~~-~~~~~gH--~~p~l~La~~L~~rGh~V-t~~~~~~~ 45 (478)
||++|+ ..+-+|+ ..-.+.+|+++..+||+| .++-...-
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~~Dg 43 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFYQDG 43 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEehHH
Confidence 677664 3333344 455778899999999984 65554443
No 307
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=46.65 E-value=1.8e+02 Score=24.67 Aligned_cols=99 Identities=12% Similarity=-0.008 Sum_probs=56.7
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCC----CCCCCeEEEEecCCCCCCCCCCccccCCC
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQ----NLASMIQFVKISLPHVDNLRENAEATIDL 83 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~----~~~~~i~~~~i~~~~~~~l~~~~~~~~~~ 83 (478)
-|.+++.++.|-....+.+|-+.+.+|++|.|+-.-... ...|+ ...+++++.... .+.. .....
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~---~~~gE~~~l~~l~~v~~~~~g----~~~~----~~~~~ 72 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGG---WKYGELKALERLPNIEIHRMG----RGFF----WTTEN 72 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCC---CccCHHHHHHhCCCcEEEECC----CCCc----cCCCC
Confidence 466778889999999999998889999999995432221 01121 111457766654 2111 00011
Q ss_pred ChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcc
Q 011765 84 PYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAY 121 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~ 121 (478)
. ..-............+.+.+.++|+||-|-...
T Consensus 73 ~----~~~~~~a~~~~~~a~~~~~~~~~dLlVLDEi~~ 106 (159)
T cd00561 73 D----EEDIAAAAEGWAFAKEAIASGEYDLVILDEINY 106 (159)
T ss_pred h----HHHHHHHHHHHHHHHHHHhcCCCCEEEEechHh
Confidence 1 111122223333455666677899999996553
No 308
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=46.35 E-value=87 Score=31.78 Aligned_cols=34 Identities=6% Similarity=0.048 Sum_probs=27.4
Q ss_pred EEEec-CCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011765 9 IAMFP-WLAFGHMIPWLELAKLIAQKGHKIFFIST 42 (478)
Q Consensus 9 il~~~-~~~~gH~~p~l~La~~L~~rGh~Vt~~~~ 42 (478)
|++.. -.+.|-..-+..|++.|+++|++|..+=+
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~ 36 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKV 36 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEcc
Confidence 55553 34469999999999999999999998754
No 309
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=46.27 E-value=46 Score=30.03 Aligned_cols=27 Identities=11% Similarity=0.091 Sum_probs=20.9
Q ss_pred ccEEEEecCCCcc--CHHHHHHHHHHHHh
Q 011765 6 KLQIAMFPWLAFG--HMIPWLELAKLIAQ 32 (478)
Q Consensus 6 ~~~il~~~~~~~g--H~~p~l~La~~L~~ 32 (478)
+||||+..|.-.| -+||...++++|..
T Consensus 1 m~~ILvTGF~PFgg~~~NPS~~~v~~L~~ 29 (222)
T PRK13195 1 MSKVLVTGFGPYGVTPVNPAQLTAEELDG 29 (222)
T ss_pred CCEEEEeeecCCCCCCcCchHHHHHhccc
Confidence 4889887766543 48999999999863
No 310
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.97 E-value=28 Score=33.95 Aligned_cols=41 Identities=17% Similarity=0.129 Sum_probs=37.0
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccc
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNID 47 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 47 (478)
-=|+|+..-+.|-..-+..+|..++++|+.+-+++.+.|+.
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRa 142 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRA 142 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeeccccc
Confidence 35678888899999999999999999999999999998865
No 311
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=45.91 E-value=2e+02 Score=24.99 Aligned_cols=52 Identities=17% Similarity=0.277 Sum_probs=33.6
Q ss_pred CCcEeccccc----cch---hhHHHHHhhcCeEEEeeccC--------CCCcccHHHHHHHHHHHhc
Q 011765 376 GMPLIVLTCY----ADQ---GLNAKLLEEKQIVELIPRDE--------GDGFFTRNSVAESLRLVLV 427 (478)
Q Consensus 376 GvP~l~~P~~----~DQ---~~na~~v~~~g~G~~l~~~~--------~~~~~~~~~l~~~i~~ll~ 427 (478)
++|++++|.. +.- ..|..++++.|+=+.-+... ....-+.++|.+.+.+.+.
T Consensus 113 ~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~g~la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 113 TTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKEGLLACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred CCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCccccCCccCCCCCCHHHHHHHHHHHhc
Confidence 8999999963 333 45677788777655544421 0112577888888877665
No 312
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=45.41 E-value=34 Score=31.74 Aligned_cols=38 Identities=18% Similarity=0.289 Sum_probs=33.8
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
|.|.+..=++.|...-..+||..|+++|++|.++--++
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dp 38 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDP 38 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 67888887888999999999999999999999886654
No 313
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=45.37 E-value=30 Score=32.53 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=33.5
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCC
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLP 50 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 50 (478)
..++|+++..+..|. .+|+.|+++||.|.++..+...+...
T Consensus 2 ~~~~v~IvG~GliG~-----s~a~~l~~~g~~v~i~g~d~~~~~~~ 42 (279)
T COG0287 2 ASMKVGIVGLGLMGG-----SLARALKEAGLVVRIIGRDRSAATLK 42 (279)
T ss_pred CCcEEEEECCchHHH-----HHHHHHHHcCCeEEEEeecCcHHHHH
Confidence 357899999888875 58999999999999998887765443
No 314
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=45.15 E-value=57 Score=28.64 Aligned_cols=44 Identities=16% Similarity=0.055 Sum_probs=30.9
Q ss_pred hhhhHHHHHHHhhcCCCEEEEcC--CcccHHHHHHHhCCCeEEEec
Q 011765 96 DCLEEPMAKLLQSLAPDWLLFDF--AAYWLPARARELGIPSGFFSI 139 (478)
Q Consensus 96 ~~~~~~l~~ll~~~~pD~vI~D~--~~~~~~~~A~~lgIP~i~~~~ 139 (478)
..+...+.+.+...++|+|++=. -.+.|..+|..+|+|++...-
T Consensus 36 ~~i~~~la~~~~~~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vRK 81 (189)
T PRK09219 36 NEIGKEFARRFKDEGITKILTIEASGIAPAVMAALALGVPVVFAKK 81 (189)
T ss_pred HHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEEEEE
Confidence 33444555556667899998543 233678899999999998743
No 315
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=45.10 E-value=54 Score=33.38 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=31.8
Q ss_pred ccEEEEecCCCccCHHH------------HHHHHHHHHhCCCeEEEEeCCCc
Q 011765 6 KLQIAMFPWLAFGHMIP------------WLELAKLIAQKGHKIFFISTPRN 45 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p------------~l~La~~L~~rGh~Vt~~~~~~~ 45 (478)
.+|||+...|..=.+.| -..||+++..+|++||+++.+..
T Consensus 256 gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~ 307 (475)
T PRK13982 256 GRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD 307 (475)
T ss_pred CCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcC
Confidence 46788777777666665 46899999999999999997653
No 316
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.03 E-value=31 Score=32.89 Aligned_cols=52 Identities=23% Similarity=0.263 Sum_probs=38.3
Q ss_pred ceeeeeccChhhHHHHHHh----CCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcc
Q 011765 357 VGGFLTHAGWSSVVEALQF----GMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVE 428 (478)
Q Consensus 357 ~~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~ 428 (478)
++++|+=||=||++.|.+. ++|++++-.. .+|... + ++.+++.+++++++++
T Consensus 69 ~Dlvi~iGGDGTlL~aar~~~~~~iPilGIN~G-------------~lGFLt---~----~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 69 MKFAIVLGGDGTVLSAARQLAPCGIPLLTINTG-------------HLGFLT---E----AYLNQLDEAIDQVLAG 124 (305)
T ss_pred cCEEEEEeCcHHHHHHHHHhcCCCCcEEEEeCC-------------CCcccc---c----CCHHHHHHHHHHHHcC
Confidence 4459999999999999775 7898886432 122222 2 5778999999999984
No 317
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=44.93 E-value=28 Score=32.18 Aligned_cols=46 Identities=13% Similarity=0.272 Sum_probs=38.9
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPR 51 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~ 51 (478)
...++|+..+|.|-..=..+||.+|.++|+.|+|++.++....+..
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKA 150 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH
Confidence 4578999999988888889999999988999999999888665543
No 318
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=44.92 E-value=36 Score=29.44 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=23.8
Q ss_pred HHHhhcCCCEEEEcCCccc--HHHHHHHhCCCeEEEe
Q 011765 104 KLLQSLAPDWLLFDFAAYW--LPARARELGIPSGFFS 138 (478)
Q Consensus 104 ~ll~~~~pD~vI~D~~~~~--~~~~A~~lgIP~i~~~ 138 (478)
+.+.+.+||+||....... ....-+..|||++.+.
T Consensus 63 E~ll~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 63 ELIVALKPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred HHHhccCCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 4445689999998654332 2344578999998873
No 319
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=44.70 E-value=1.9e+02 Score=27.45 Aligned_cols=41 Identities=12% Similarity=0.095 Sum_probs=34.1
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCcc
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNI 46 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (478)
+..|++...++.|-..-+..|+..|.++|+.|.++..+...
T Consensus 34 ~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 34 AHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 34566677788899999999999999999999998877544
No 320
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=44.65 E-value=19 Score=34.16 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=27.6
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccc
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNID 47 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 47 (478)
+|||+|+..|.. ....-++|...||+|.-+.+...+.
T Consensus 1 ~mkivF~GTp~f-----a~~~L~~L~~~~~eivaV~Tqpdkp 37 (307)
T COG0223 1 MMRIVFFGTPEF-----AVPSLEALIEAGHEIVAVVTQPDKP 37 (307)
T ss_pred CcEEEEEcCchh-----hHHHHHHHHhCCCceEEEEeCCCCc
Confidence 589999987754 3556778888999999776665543
No 321
>PLN02929 NADH kinase
Probab=44.47 E-value=36 Score=32.30 Aligned_cols=63 Identities=13% Similarity=0.085 Sum_probs=40.8
Q ss_pred eeeeeccChhhHHHHHH---hCCcEeccccccc------hhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcc
Q 011765 358 GGFLTHAGWSSVVEALQ---FGMPLIVLTCYAD------QGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVE 428 (478)
Q Consensus 358 ~~~ItHgG~~s~~eal~---~GvP~l~~P~~~D------Q~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~ 428 (478)
+++|+-||-||++.|.+ .++|++++=.... ++.|.-. +..-+|.... ++.+++.++|++++++
T Consensus 66 Dlvi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~-~~r~lGfL~~-------~~~~~~~~~L~~il~g 137 (301)
T PLN02929 66 DLVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD-ARRSTGHLCA-------ATAEDFEQVLDDVLFG 137 (301)
T ss_pred CEEEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc-cccCcccccc-------CCHHHHHHHHHHHHcC
Confidence 44999999999999855 4689988766421 1222211 1112333332 4678999999999984
No 322
>PLN02256 arogenate dehydrogenase
Probab=44.39 E-value=26 Score=33.43 Aligned_cols=36 Identities=31% Similarity=0.502 Sum_probs=27.6
Q ss_pred CCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
.++|+|.|+..+..|- .+|+.|.+.|++|+.+....
T Consensus 34 ~~~~kI~IIG~G~mG~-----slA~~L~~~G~~V~~~d~~~ 69 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQ-----FLAKTFVKQGHTVLATSRSD 69 (304)
T ss_pred CCCCEEEEEeeCHHHH-----HHHHHHHhCCCEEEEEECcc
Confidence 4578999987665543 58888999999999877654
No 323
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=44.28 E-value=30 Score=33.06 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=31.2
Q ss_pred ecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCcc
Q 011765 12 FPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNI 46 (478)
Q Consensus 12 ~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (478)
++.+++|-.--.+.|++.|.++|+++.+++-..-.
T Consensus 36 itvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~ 70 (311)
T TIGR00682 36 LSVGGTGKTPVVVWLAELLKDRGLRVGVLSRGYGS 70 (311)
T ss_pred cccCCcChHHHHHHHHHHHHHCCCEEEEECCCCCC
Confidence 46789999999999999999999999999987655
No 324
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=44.25 E-value=23 Score=33.62 Aligned_cols=42 Identities=19% Similarity=0.288 Sum_probs=30.3
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLP 53 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g 53 (478)
|||+++..++.| ..+|..|++.||+|+++..+...+.+.+.|
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g 42 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVRPKRAKALRERG 42 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEecHHHHHHHHhCC
Confidence 688888777776 457888999999999998744433344333
No 325
>PRK13695 putative NTPase; Provisional
Probab=44.23 E-value=2e+02 Score=24.46 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=28.5
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEE
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIF 38 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt 38 (478)
|||++.-.++.|=-.-+..++..|..+|+.+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~ 32 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELLKEEGYKVG 32 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 79999999999998888899999988898865
No 326
>PRK14098 glycogen synthase; Provisional
Probab=43.74 E-value=40 Score=34.66 Aligned_cols=40 Identities=3% Similarity=-0.005 Sum_probs=30.3
Q ss_pred CccEEEEecCC-----Cc-cCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 5 SKLQIAMFPWL-----AF-GHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 5 ~~~~il~~~~~-----~~-gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
.+|||++++.- =. |=-.-+-+|.++|+++||+|.++.+..
T Consensus 4 ~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 4 RNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred CCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 35999997532 12 444567889999999999999999854
No 327
>PRK11519 tyrosine kinase; Provisional
Probab=43.62 E-value=3.5e+02 Score=29.48 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=33.0
Q ss_pred ccEEEEec--CCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccc
Q 011765 6 KLQIAMFP--WLAFGHMIPWLELAKLIAQKGHKIFFISTPRNID 47 (478)
Q Consensus 6 ~~~il~~~--~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 47 (478)
+.|+++++ .|+.|-..-..+||..|+..|++|.++-.+....
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~ 568 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKG 568 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence 44565543 5688999999999999999999999997665433
No 328
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=43.62 E-value=1.9e+02 Score=24.04 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=31.8
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 9 IAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 9 il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
|+++..++.|-...+..++..|.++|++|.++..+.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~ 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 677788899999999999999999999999888664
No 329
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=43.46 E-value=39 Score=31.35 Aligned_cols=38 Identities=16% Similarity=0.224 Sum_probs=32.8
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
|+|.+..=++-|-..-+.+||..|+++|++|.++--+.
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~ 38 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDP 38 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 67888877788999999999999999999999886554
No 330
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=43.41 E-value=72 Score=28.53 Aligned_cols=26 Identities=12% Similarity=0.216 Sum_probs=20.6
Q ss_pred cEEEEecCCCcc--CHHHHHHHHHHHHh
Q 011765 7 LQIAMFPWLAFG--HMIPWLELAKLIAQ 32 (478)
Q Consensus 7 ~~il~~~~~~~g--H~~p~l~La~~L~~ 32 (478)
|+||+..|.-.| -.||...++++|..
T Consensus 1 M~vLiTGF~PF~g~~~NPS~~~v~~L~~ 28 (209)
T PRK13193 1 MTVLLFGFEPFLEYKENPSQLIVEALNG 28 (209)
T ss_pred CEEEEEeeCCCCCCCCCcHHHHHHHhhc
Confidence 788887776553 48999999999965
No 331
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=43.37 E-value=32 Score=31.00 Aligned_cols=100 Identities=14% Similarity=0.186 Sum_probs=56.7
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChhH
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYDE 87 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~~ 87 (478)
-+++...|+.|-..-++.++....++|+.|.|++.+...+.+.+.-.+.. ..+... ..... ...+...
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~--~~~~~~-------~~~~l-~~~~~~~-- 85 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKG--WDLEDY-------IDKSL-YIVRLDP-- 85 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcC--CChHHH-------HhCCe-EEEecCH--
Confidence 45666778889988888888888788999999999876654432210000 111000 00000 0000000
Q ss_pred HHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCc
Q 011765 88 VKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAA 120 (478)
Q Consensus 88 ~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~ 120 (478)
..+......+...+..++++.+++.||.|...
T Consensus 86 -~~~~~~~~~l~~~~~~~i~~~~~~~vVIDsls 117 (224)
T TIGR03880 86 -SDFKTSLNRIKNELPILIKELGASRVVIDPIS 117 (224)
T ss_pred -HHHHhhHHHHHHHHHHHHHHhCCCEEEEcChH
Confidence 11122234455566777778899999999654
No 332
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=43.12 E-value=14 Score=36.40 Aligned_cols=112 Identities=15% Similarity=0.194 Sum_probs=60.6
Q ss_pred CChhhHhhhcccCCCC--------ceEEEEeCcccCCCHHHHHHHHHHHHh--CCCCEEEEEecCCCCCCCCCCCCChhh
Q 011765 262 DTWRSIKEWLDEQEKG--------SVVYVAFGSEAKPSQEELTEIALGLEL--SKLPFFWVLKKRLGQADTEPIELPDGF 331 (478)
Q Consensus 262 ~~~~~~~~~l~~~~~~--------~~v~vs~Gs~~~~~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~~p~~~ 331 (478)
+.++-+.+||+-..++ .+-|+.+|.-. ..-.++-+.+++ ++.++++--... +. ..-.-|...
T Consensus 385 p~n~~l~~Wid~A~e~i~fqGlpARIcw~g~geR~----r~gLafNemVr~GelkaPvvigRDHl-D~---gsvaSP~RE 456 (561)
T COG2987 385 PDNKHLHRWIDMARERIAFQGLPARICWLGLGERA----RIGLAFNEMVRNGELKAPVVIGRDHL-DS---GSVASPNRE 456 (561)
T ss_pred CCcHHHHHHHHHHHhcCccccCcceeeecccchHH----HHHHHHHHHHhcCCcCCCeEeccccc-cc---cCccCCcch
Confidence 4566788999876543 24444444211 111123333332 334444332221 11 122234444
Q ss_pred hhhcCCCcEEEeccCChhhhhcCCC--ceeeeeccChhhHHHHHHhCCcEec
Q 011765 332 EERTRGRGVVYTSWAPQLAILAHDS--VGGFLTHAGWSSVVEALQFGMPLIV 381 (478)
Q Consensus 332 ~~~~~~~n~~~~~~vpq~~vL~~~~--~~~~ItHgG~~s~~eal~~GvP~l~ 381 (478)
.+.++...-.+.+|.-+.++|..++ .=..+||||--++..|++.|.=+|+
T Consensus 457 Te~mkDGsdavsDwp~lnallntA~GatwvslHhGGGvgmG~s~h~G~viVa 508 (561)
T COG2987 457 TEAMKDGSDAVSDWPLLNALLNTASGATWVSLHHGGGVGMGFSQHAGMVIVA 508 (561)
T ss_pred hhcccCccchhhhhHHHHHHhhhccCCcEEEEecCCcccccccccCceEEEe
Confidence 5666655566778988888886542 1136899998888888887765444
No 333
>PRK04328 hypothetical protein; Provisional
Probab=43.00 E-value=2.7e+02 Score=25.55 Aligned_cols=41 Identities=10% Similarity=-0.074 Sum_probs=33.3
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCcccc
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDR 48 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 48 (478)
-+++.-.|+.|-..-.+.++.+-+++|+.+.|++.++..+.
T Consensus 25 ~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~ 65 (249)
T PRK04328 25 VVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQ 65 (249)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHH
Confidence 46777888899988888888777788999999998766553
No 334
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=42.79 E-value=62 Score=32.45 Aligned_cols=29 Identities=17% Similarity=0.138 Sum_probs=22.0
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhC-CCeEEEE
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQK-GHKIFFI 40 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~r-Gh~Vt~~ 40 (478)
||||++..++..| .|+++|.+. |+.+.++
T Consensus 1 ~kvliiG~G~~~~-----~l~~~l~~~~~~~~i~~ 30 (420)
T PRK00885 1 MKVLVIGSGGREH-----ALAWKLAQSPLVEKVYV 30 (420)
T ss_pred CEEEEECCCHHHH-----HHHHHHHhCCCCCEEEE
Confidence 7999999997777 599999886 4444444
No 335
>PRK06904 replicative DNA helicase; Validated
Probab=42.65 E-value=1.3e+02 Score=30.87 Aligned_cols=42 Identities=12% Similarity=0.122 Sum_probs=34.6
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCCccccC
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQ-KGHKIFFISTPRNIDRL 49 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~~ 49 (478)
=|++...|+.|-..-++.+|...+. .|+.|.|++-+...+.+
T Consensus 223 LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql 265 (472)
T PRK06904 223 LIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQI 265 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 3566788999999999999998875 59999999988776544
No 336
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=42.65 E-value=77 Score=30.24 Aligned_cols=29 Identities=14% Similarity=0.276 Sum_probs=23.7
Q ss_pred CCCceeeeeccChhhHHHHHHh----CCcEecccc
Q 011765 354 HDSVGGFLTHAGWSSVVEALQF----GMPLIVLTC 384 (478)
Q Consensus 354 ~~~~~~~ItHgG~~s~~eal~~----GvP~l~~P~ 384 (478)
.+++ +|+-||-||+.+++.. ++|++++..
T Consensus 57 ~~d~--vi~~GGDGT~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 57 LIDL--AIVLGGDGTVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred CcCE--EEEECCcHHHHHHHHHhccCCCCEEEEec
Confidence 3455 9999999999999864 789888766
No 337
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=42.28 E-value=1.1e+02 Score=29.30 Aligned_cols=32 Identities=16% Similarity=0.203 Sum_probs=23.0
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
|||+|+..+. -.+...+.|.++||+|..+.+.
T Consensus 1 mkIvf~G~~~-----~a~~~L~~L~~~~~~i~~Vvt~ 32 (309)
T PRK00005 1 MRIVFMGTPE-----FAVPSLKALLESGHEVVAVVTQ 32 (309)
T ss_pred CEEEEECCCH-----HHHHHHHHHHHCCCcEEEEECC
Confidence 7888885443 3466778888889998866654
No 338
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=41.92 E-value=46 Score=29.43 Aligned_cols=37 Identities=16% Similarity=0.345 Sum_probs=29.4
Q ss_pred cEEEEecCCCccCHHHHHH-HHHHHHh-CCCeEEEEeCC
Q 011765 7 LQIAMFPWLAFGHMIPWLE-LAKLIAQ-KGHKIFFISTP 43 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~-La~~L~~-rGh~Vt~~~~~ 43 (478)
|||+++-+..+||..-+.. +++.+.+ .|++|.++.-+
T Consensus 2 ~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~ 40 (200)
T PRK03767 2 AKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVP 40 (200)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEecc
Confidence 6899988888999999777 5666666 89999887643
No 339
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=41.53 E-value=40 Score=34.86 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=28.3
Q ss_pred HHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEEe
Q 011765 101 PMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFFS 138 (478)
Q Consensus 101 ~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~ 138 (478)
.+.+++++.+||+||.+. ....+|+++|||++.++
T Consensus 365 ei~~~I~~~~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 365 EVGDMIARVEPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHHhcCCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 456777788999999995 45667899999998874
No 340
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=41.24 E-value=61 Score=25.78 Aligned_cols=37 Identities=24% Similarity=0.247 Sum_probs=33.4
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
||++..-++.|-......+++.|+++|.+|.++..+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 5788888999999999999999999999999888776
No 341
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=40.93 E-value=1e+02 Score=30.79 Aligned_cols=91 Identities=16% Similarity=0.070 Sum_probs=52.5
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChh
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYD 86 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~ 86 (478)
|||+++-.+..+| .|++++++-|+.++++..+.+...... .....+. . +.
T Consensus 1 ~kiliiG~G~~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~--------~------~~--- 50 (423)
T TIGR00877 1 MKVLVIGNGGREH-----ALAWKLAQSPLVKYVYVAPGNAGTARL--------AKNKNVA--------I------SI--- 50 (423)
T ss_pred CEEEEECCChHHH-----HHHHHHHhCCCccEEEEECCCHHHhhh--------ccccccc--------C------CC---
Confidence 6899988877754 678888888887777755544221110 0001010 0 00
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCccc---HHHHHHHhCCCeEEE
Q 011765 87 EVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYW---LPARARELGIPSGFF 137 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~---~~~~A~~lgIP~i~~ 137 (478)
.-.+.+.++.++.++|+||...-... .....+.+|+|++..
T Consensus 51 ----------~d~~~l~~~~~~~~id~vi~~~e~~l~~~~~~~l~~~gi~~~g~ 94 (423)
T TIGR00877 51 ----------TDIEALVEFAKKKKIDLAVIGPEAPLVLGLVDALEEAGIPVFGP 94 (423)
T ss_pred ----------CCHHHHHHHHHHhCCCEEEECCchHHHHHHHHHHHHCCCeEECC
Confidence 01235566777888999997643221 234567779987643
No 342
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=40.83 E-value=28 Score=30.05 Aligned_cols=41 Identities=10% Similarity=0.041 Sum_probs=34.8
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccC
Q 011765 9 IAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRL 49 (478)
Q Consensus 9 il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 49 (478)
+++...|+.|=..-.+.++....+.|..|.|++.++..+.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~ 42 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEEL 42 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHH
Confidence 56778889999999999999999999999999987665433
No 343
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=40.82 E-value=45 Score=29.66 Aligned_cols=35 Identities=26% Similarity=0.276 Sum_probs=25.5
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRN 45 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~ 45 (478)
+|+++++-.+-.| ..||..|.+.||+|++.+....
T Consensus 1 m~~~~i~GtGniG-----~alA~~~a~ag~eV~igs~r~~ 35 (211)
T COG2085 1 MMIIAIIGTGNIG-----SALALRLAKAGHEVIIGSSRGP 35 (211)
T ss_pred CcEEEEeccChHH-----HHHHHHHHhCCCeEEEecCCCh
Confidence 4566665554443 5789999999999999865544
No 344
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=40.80 E-value=1.4e+02 Score=28.83 Aligned_cols=98 Identities=19% Similarity=0.157 Sum_probs=57.3
Q ss_pred cEEEEecCCCc-----cCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccC
Q 011765 7 LQIAMFPWLAF-----GHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATI 81 (478)
Q Consensus 7 ~~il~~~~~~~-----gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~ 81 (478)
..|+|.|..+. --..-+..|++.|.++|.+|.++.++...+..++.. +.+.....-..
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~-----------------~~~~~~~~l~~ 238 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIA-----------------KGLPNAVILAG 238 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHH-----------------HhcCCccccCC
Confidence 57777777233 234468999999999999999998885444433321 11111000000
Q ss_pred CCChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEEec
Q 011765 82 DLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFFSI 139 (478)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~ 139 (478)
.. -...+..++ ...|++|+-- ++.+.+|..+|.|+|.+..
T Consensus 239 k~--------------sL~e~~~li--~~a~l~I~~D--Sg~~HlAaA~~~P~I~iyg 278 (334)
T COG0859 239 KT--------------SLEELAALI--AGADLVIGND--SGPMHLAAALGTPTIALYG 278 (334)
T ss_pred CC--------------CHHHHHHHH--hcCCEEEccC--ChHHHHHHHcCCCEEEEEC
Confidence 00 011222222 2568887653 3467899999999999864
No 345
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=40.76 E-value=95 Score=30.54 Aligned_cols=77 Identities=19% Similarity=0.219 Sum_probs=52.7
Q ss_pred hhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeE-EEeeccCCCCcccHHHHHHHHHHHhc
Q 011765 349 LAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIV-ELIPRDEGDGFFTRNSVAESLRLVLV 427 (478)
Q Consensus 349 ~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G-~~l~~~~~~~~~~~~~l~~~i~~ll~ 427 (478)
..+++++++ +|.- =+=|+.-|++.|+|.+++-+ |+.+...+++.|+- ..++... ++.+.+...+.+.+.
T Consensus 280 ~~~l~~~dl--~Vg~-R~HsaI~al~~g~p~i~i~Y---~~K~~~l~~~~gl~~~~~~i~~----~~~~~l~~~~~e~~~ 349 (385)
T COG2327 280 GGILAACDL--IVGM-RLHSAIMALAFGVPAIAIAY---DPKVRGLMQDLGLPGFAIDIDP----LDAEILSAVVLERLT 349 (385)
T ss_pred HHHhccCce--EEee-hhHHHHHHHhcCCCeEEEee---cHHHHHHHHHcCCCcccccCCC----CchHHHHHHHHHHHh
Confidence 346666666 6631 23468889999999999765 44555666667663 4445555 899999999998887
Q ss_pred ccchHHHHHH
Q 011765 428 EEKGQIYRDK 437 (478)
Q Consensus 428 ~~~~~~~~~~ 437 (478)
+ .++.+++
T Consensus 350 ~--~~~~~~~ 357 (385)
T COG2327 350 K--LDELRER 357 (385)
T ss_pred c--cHHHHhh
Confidence 4 4555555
No 346
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=40.73 E-value=2.6e+02 Score=24.79 Aligned_cols=38 Identities=21% Similarity=0.143 Sum_probs=27.8
Q ss_pred eEEEEeCcccCCCHHHHHH-HHHHHHhCCCCEEEEEecC
Q 011765 279 VVYVAFGSEAKPSQEELTE-IALGLELSKLPFFWVLKKR 316 (478)
Q Consensus 279 ~v~vs~Gs~~~~~~~~~~~-~~~al~~~~~~~i~~~~~~ 316 (478)
+-+--+||..+++++-+.. ..+.+++....|++.++.+
T Consensus 32 i~vrVvgsgaKM~Pe~veaav~~~~e~~~pDfvi~isPN 70 (277)
T COG1927 32 IEVRVVGSGAKMDPECVEAAVTEMLEEFNPDFVIYISPN 70 (277)
T ss_pred ceEEEeccccccChHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 4445589989999887777 5556677888888887654
No 347
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=40.67 E-value=76 Score=32.24 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=33.8
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccc
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNID 47 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 47 (478)
=+++..-|+.|-..-++.++..+.++|+.|.|++.++..+
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~ 135 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQ 135 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHH
Confidence 3566778899999999999999999999999999876544
No 348
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=40.28 E-value=14 Score=32.89 Aligned_cols=114 Identities=13% Similarity=0.074 Sum_probs=64.0
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEeCCCccccC-CCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChhHHHHHHHH
Q 011765 16 AFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRL-PRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYDEVKYLKQS 94 (478)
Q Consensus 16 ~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~-~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 94 (478)
...|+...+.++..++.||=.+.|+++....... +..- ..+..+.+- ..+..+.... ....+...
T Consensus 90 T~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA----~r~~gy~~~----~~w~~G~lTN------~~~l~g~~ 155 (251)
T KOG0832|consen 90 TASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERAA----RRAGGYSHN----RKWLGGLLTN------ARELFGAL 155 (251)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHHH----HHhcCceee----eeeccceeec------chhhcccc
Confidence 3478889999999999999999999887655432 2211 111122221 1111211110 01111111
Q ss_pred Hhh--hhHHHHHHHhhcCCCEEEE-cCCcc-cHHHHHHHhCCCeEEEecchHH
Q 011765 95 FDC--LEEPMAKLLQSLAPDWLLF-DFAAY-WLPARARELGIPSGFFSIFTAA 143 (478)
Q Consensus 95 ~~~--~~~~l~~ll~~~~pD~vI~-D~~~~-~~~~~A~~lgIP~i~~~~~~~~ 143 (478)
... ..+...-++....+|+||. |...- .|+.=|.+++||.|.+.-+++.
T Consensus 156 ~~~~~~~pd~~~f~~t~~~D~vvvln~~e~~sAilEA~K~~IPTIgIVDtN~~ 208 (251)
T KOG0832|consen 156 VRKFLSLPDALCFLPTLTPDLVVVLNPEENHSAILEAAKMAIPTIGIVDTNCN 208 (251)
T ss_pred cccccCCCcceeecccCCcceeEecCcccccHHHHHHHHhCCCeEEEecCCCC
Confidence 111 1223334455667899875 54433 5778899999999999776663
No 349
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=40.23 E-value=75 Score=27.57 Aligned_cols=37 Identities=22% Similarity=0.058 Sum_probs=29.1
Q ss_pred HHHHHHhhcCCCEEEEcC--CcccHHHHHHHhCCCeEEE
Q 011765 101 PMAKLLQSLAPDWLLFDF--AAYWLPARARELGIPSGFF 137 (478)
Q Consensus 101 ~l~~ll~~~~pD~vI~D~--~~~~~~~~A~~lgIP~i~~ 137 (478)
.+.+.+...++|.|++=. =.+.|..+|.++|+|++..
T Consensus 44 ~~~~~~~~~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 44 ELAERYKDDGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred HHHHHhcccCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 666667777899999653 2336889999999999987
No 350
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=40.19 E-value=52 Score=31.00 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=20.3
Q ss_pred HHHHHHHHhCCCeEEEEeCCCccc
Q 011765 24 LELAKLIAQKGHKIFFISTPRNID 47 (478)
Q Consensus 24 l~La~~L~~rGh~Vt~~~~~~~~~ 47 (478)
.++|..|+++|++|.+++.++...
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~~~ 26 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPAHS 26 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCC
Confidence 468899999999999999886654
No 351
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=40.03 E-value=22 Score=31.02 Aligned_cols=42 Identities=12% Similarity=0.184 Sum_probs=31.3
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCC
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLP 50 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 50 (478)
||++.-.++.|-+. ...+++.|+++|++|.++.++....++.
T Consensus 1 ~illgvtGsiaa~k-a~~lir~L~~~g~~V~vv~T~~A~~fv~ 42 (181)
T TIGR00421 1 RIVVAMTGASGVIY-GIRLLEVLKEAGVEVHLVISDWAKETIK 42 (181)
T ss_pred CEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECccHHHHHH
Confidence 34454444444444 4889999999999999999998887764
No 352
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.96 E-value=53 Score=30.45 Aligned_cols=51 Identities=18% Similarity=0.162 Sum_probs=37.0
Q ss_pred eeeeeccChhhHHHHHH-hCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcc
Q 011765 358 GGFLTHAGWSSVVEALQ-FGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVE 428 (478)
Q Consensus 358 ~~~ItHgG~~s~~eal~-~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~ 428 (478)
+++|+=||-||+..|++ +++|++++-... +|... + ++.+++.+++.+++++
T Consensus 43 d~vi~iGGDGT~L~a~~~~~~Pilgin~G~-------------lGfl~---~----~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 43 DLIIVVGGDGTVLKAAKKVGTPLVGFKAGR-------------LGFLS---S----YTLEEIDRFLEDLKNW 94 (256)
T ss_pred CEEEEECCcHHHHHHHHHcCCCEEEEeCCC-------------Ccccc---c----cCHHHHHHHHHHHHcC
Confidence 44999999999999987 577877665321 23332 2 5778888999998883
No 353
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=39.94 E-value=33 Score=34.42 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=28.7
Q ss_pred HHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEEe
Q 011765 101 PMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFFS 138 (478)
Q Consensus 101 ~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~ 138 (478)
.+.+++++.+||++|.... ...+|+++|||++.+.
T Consensus 360 e~~~~i~~~~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 360 ELEEFVKRLKPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred HHHHHHHHhCCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 5667778889999999864 5678999999998763
No 354
>PF15092 UPF0728: Uncharacterised protein family UPF0728
Probab=39.82 E-value=99 Score=23.03 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=33.0
Q ss_pred CCCCCccEEEEecCCCcc----CHHHHHHHHHHHHhCCCeEEEEeCCCccc
Q 011765 1 MADNSKLQIAMFPWLAFG----HMIPWLELAKLIAQKGHKIFFISTPRNID 47 (478)
Q Consensus 1 ~~~~~~~~il~~~~~~~g----H~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 47 (478)
|-.+....|-+=|+.+.| +..++..|-..|++.||+|.+.-+..+.-
T Consensus 1 Mp~~a~V~iryGPY~a~glv~hrt~RL~GLqa~L~~dGh~v~L~~~~d~n~ 51 (88)
T PF15092_consen 1 MPKNAYVTIRYGPYSACGLVEHRTFRLEGLQAVLAKDGHEVILEKIEDWNV 51 (88)
T ss_pred CCCccEEEEEecCchhhCeeeehHHHHHHHHHHHHhCCcEEEEEEeccccE
Confidence 333333444444555554 57889999999999999999988877643
No 355
>PRK08840 replicative DNA helicase; Provisional
Probab=39.76 E-value=1.5e+02 Score=30.16 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=34.2
Q ss_pred EEEecCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCCccccC
Q 011765 9 IAMFPWLAFGHMIPWLELAKLIAQ-KGHKIFFISTPRNIDRL 49 (478)
Q Consensus 9 il~~~~~~~gH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~~ 49 (478)
+++...|+.|-..-.+.+|...+. .|+.|.|++-+...+.+
T Consensus 220 iviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ql 261 (464)
T PRK08840 220 IIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQL 261 (464)
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHHHH
Confidence 566788899999999999999874 59999999988776544
No 356
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=39.71 E-value=3e+02 Score=25.61 Aligned_cols=113 Identities=9% Similarity=-0.008 Sum_probs=65.8
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCC--CCC-------CCCCCeEEEEecCCCCCCCCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPR--LPQ-------NLASMIQFVKISLPHVDNLREN 76 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~--~g~-------~~~~~i~~~~i~~~~~~~l~~~ 76 (478)
...|.|.-.|+-|-=.-.-.|++.|.++|++|-+++-++...+--. .|+ ...+++-+.+.+ ..
T Consensus 29 a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~a----tR---- 100 (266)
T PF03308_consen 29 AHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMA----TR---- 100 (266)
T ss_dssp SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE-----------
T ss_pred ceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecC----cC----
Confidence 4678888899999999999999999999999999887766442211 111 122444444443 10
Q ss_pred ccccCCCChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcc--cHHHHHHHhCCCeEEEec
Q 011765 77 AEATIDLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAY--WLPARARELGIPSGFFSI 139 (478)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~--~~~~~A~~lgIP~i~~~~ 139 (478)
..+..+. ........+++...+|+||.+.... .-..++...+.=++++.|
T Consensus 101 ---------G~lGGls----~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~P 152 (266)
T PF03308_consen 101 ---------GSLGGLS----RATRDAVRLLDAAGFDVIIIETVGVGQSEVDIADMADTVVLVLVP 152 (266)
T ss_dssp ---------SSHHHHH----HHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHTTSSEEEEEEES
T ss_pred ---------CCCCCcc----HhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHHhcCeEEEEecC
Confidence 0111222 2223455677788999999997554 245667766666665533
No 357
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=39.68 E-value=4.9e+02 Score=29.25 Aligned_cols=105 Identities=16% Similarity=0.132 Sum_probs=63.0
Q ss_pred ccCChhh---hhcCCCceeee---eccChh-hHHHHHHhCC---cEeccccccchhhHHHHHhhcC-eEEEeeccCCCCc
Q 011765 344 SWAPQLA---ILAHDSVGGFL---THAGWS-SVVEALQFGM---PLIVLTCYADQGLNAKLLEEKQ-IVELIPRDEGDGF 412 (478)
Q Consensus 344 ~~vpq~~---vL~~~~~~~~I---tHgG~~-s~~eal~~Gv---P~l~~P~~~DQ~~na~~v~~~g-~G~~l~~~~~~~~ 412 (478)
..+|+.+ ++..+++ |+ ..-|+| ...|+++++. -+++++-+. .-|..+ | -|+.+++
T Consensus 446 ~~l~~eeL~AlY~~ADV--~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfa---Gaa~~L---~~~AllVNP------ 511 (934)
T PLN03064 446 RSLDFHALCALYAVTDV--ALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFA---GAAQSL---GAGAILVNP------ 511 (934)
T ss_pred cCCCHHHHHHHHHhCCE--EEeCccccccCchHHHHHHhhcCCCCCeEEeCCC---chHHHh---CCceEEECC------
Confidence 3466654 4556777 55 355887 5569999954 222223221 122222 3 3566666
Q ss_pred ccHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHhc
Q 011765 413 FTRNSVAESLRLVLV-EEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLKNH 465 (478)
Q Consensus 413 ~~~~~l~~~i~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (478)
.+.++++++|.++|+ . .++-+++.+++.+.+... ....-++.|++.+...
T Consensus 512 ~D~~~vA~AI~~AL~M~--~~Er~~r~~~~~~~V~~~-d~~~Wa~~fl~~L~~~ 562 (934)
T PLN03064 512 WNITEVAASIAQALNMP--EEEREKRHRHNFMHVTTH-TAQEWAETFVSELNDT 562 (934)
T ss_pred CCHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhcccC-CHHHHHHHHHHHHHHH
Confidence 488999999999887 3 455666667777766543 4455566677766544
No 358
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=39.59 E-value=48 Score=33.79 Aligned_cols=52 Identities=17% Similarity=0.180 Sum_probs=37.5
Q ss_pred ceeeeeccChhhHHHHHHh----CCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcc
Q 011765 357 VGGFLTHAGWSSVVEALQF----GMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVE 428 (478)
Q Consensus 357 ~~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~ 428 (478)
++++|+=||-||++.|.+. ++|++++-.. .+|.. .+ ++.+++.++|.+++++
T Consensus 263 ~DlVIsiGGDGTlL~Aar~~~~~~iPILGIN~G-------------~LGFL---t~----i~~~e~~~~Le~il~G 318 (508)
T PLN02935 263 VDLVITLGGDGTVLWAASMFKGPVPPVVPFSMG-------------SLGFM---TP----FHSEQYRDCLDAILKG 318 (508)
T ss_pred CCEEEEECCcHHHHHHHHHhccCCCcEEEEeCC-------------Cccee---cc----cCHHHHHHHHHHHHcC
Confidence 3449999999999999774 5677765211 13443 22 6789999999999984
No 359
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=39.44 E-value=36 Score=28.92 Aligned_cols=31 Identities=16% Similarity=0.289 Sum_probs=23.7
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFIS 41 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~ 41 (478)
||||.|+-.+..| ..+|+.|.++||+|+++-
T Consensus 1 m~~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d 31 (163)
T PF03446_consen 1 MMKIGFIGLGNMG-----SAMARNLAKAGYEVTVYD 31 (163)
T ss_dssp -BEEEEE--SHHH-----HHHHHHHHHTTTEEEEEE
T ss_pred CCEEEEEchHHHH-----HHHHHHHHhcCCeEEeec
Confidence 5788888887665 578999999999999875
No 360
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=39.43 E-value=87 Score=28.87 Aligned_cols=102 Identities=19% Similarity=0.182 Sum_probs=54.6
Q ss_pred HHHHHHHHHhCC-CeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCC-CCCCCccccCCCChhHHHHHHHHHhhhhH
Q 011765 23 WLELAKLIAQKG-HKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVD-NLRENAEATIDLPYDEVKYLKQSFDCLEE 100 (478)
Q Consensus 23 ~l~La~~L~~rG-h~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (478)
+-..++.|.+.+ ..|.+.+.....+.... .......+-+..+|.+..+ +++.. +.....-....+
T Consensus 118 ~~eA~~~l~~~~~~~iflttGsk~L~~f~~-~~~~~~r~~~RvLp~~~~~~g~~~~------------~iia~~GPfs~e 184 (249)
T PF02571_consen 118 YEEAAELLKELGGGRIFLTTGSKNLPPFVP-APLPGERLFARVLPTPESALGFPPK------------NIIAMQGPFSKE 184 (249)
T ss_pred HHHHHHHHhhcCCCCEEEeCchhhHHHHhh-cccCCCEEEEEECCCccccCCCChh------------hEEEEeCCCCHH
Confidence 556777777777 66666666555554422 1011133555666632221 11100 000000011122
Q ss_pred HHHHHHhhcCCCEEEEcCCcccH----HHHHHHhCCCeEEE
Q 011765 101 PMAKLLQSLAPDWLLFDFAAYWL----PARARELGIPSGFF 137 (478)
Q Consensus 101 ~l~~ll~~~~pD~vI~D~~~~~~----~~~A~~lgIP~i~~ 137 (478)
.=.++++..+.|+||+=...-.+ +.+|+.+|||+|.+
T Consensus 185 ~n~al~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI 225 (249)
T PF02571_consen 185 LNRALFRQYGIDVLVTKESGGSGFDEKIEAARELGIPVIVI 225 (249)
T ss_pred HHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEE
Confidence 33557788899999976443222 46899999999998
No 361
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=39.12 E-value=3e+02 Score=24.93 Aligned_cols=155 Identities=10% Similarity=0.043 Sum_probs=79.0
Q ss_pred hcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChh
Q 011765 270 WLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQL 349 (478)
Q Consensus 270 ~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~ 349 (478)
|++.. ++++++|..|.++ ..+ +..|.+.+.++.++... +-+++..-.....+....--.+.
T Consensus 20 ~l~~~-~~~VLVVGGG~VA------~RK-~~~Ll~~gA~VtVVap~-----------i~~el~~l~~~~~i~~~~r~~~~ 80 (223)
T PRK05562 20 SLLSN-KIKVLIIGGGKAA------FIK-GKTFLKKGCYVYILSKK-----------FSKEFLDLKKYGNLKLIKGNYDK 80 (223)
T ss_pred EEECC-CCEEEEECCCHHH------HHH-HHHHHhCCCEEEEEcCC-----------CCHHHHHHHhCCCEEEEeCCCCh
Confidence 44443 3558888777665 222 23444567775555321 11222211122233222211223
Q ss_pred hhhcCCCceeeeeccChhhHHHHHH-----hCCcEecccccc-chhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHH
Q 011765 350 AILAHDSVGGFLTHAGWSSVVEALQ-----FGMPLIVLTCYA-DQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLR 423 (478)
Q Consensus 350 ~vL~~~~~~~~ItHgG~~s~~eal~-----~GvP~l~~P~~~-DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~ 423 (478)
.-|..+.+ +|..-+--.+.+.++ .|+++.++-... -.+..-..+.+-++-+.+....++. .-+..|++.|+
T Consensus 81 ~dl~g~~L--ViaATdD~~vN~~I~~~a~~~~~lvn~vd~p~~~dFi~PAiv~rg~l~IaIST~G~sP-~lar~lR~~ie 157 (223)
T PRK05562 81 EFIKDKHL--IVIATDDEKLNNKIRKHCDRLYKLYIDCSDYKKGLCIIPYQRSTKNFVFALNTKGGSP-KTSVFIGEKVK 157 (223)
T ss_pred HHhCCCcE--EEECCCCHHHHHHHHHHHHHcCCeEEEcCCcccCeEEeeeEEecCCEEEEEECCCcCc-HHHHHHHHHHH
Confidence 33555555 888777666665543 366666542110 1122223333434555555433122 33466888888
Q ss_pred HHhcccchHHHHHHHHHHHHHhccc
Q 011765 424 LVLVEEKGQIYRDKAKEMKGLFGDK 448 (478)
Q Consensus 424 ~ll~~~~~~~~~~~a~~~~~~~~~~ 448 (478)
+++.+ ...+.+.+.++++.++..
T Consensus 158 ~~l~~--~~~l~~~l~~~R~~vk~~ 180 (223)
T PRK05562 158 NFLKK--YDDFIEYVTKIRNKAKKN 180 (223)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHhh
Confidence 88853 567888888888887765
No 362
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=39.10 E-value=81 Score=32.96 Aligned_cols=95 Identities=19% Similarity=0.214 Sum_probs=50.7
Q ss_pred ChhhhhcCCCceeeeecc-Ch-hhHHHHHHhCCcEecccccc-chhhHHH--HHhhcCeEEEeeccCCCCcccHHHHHHH
Q 011765 347 PQLAILAHDSVGGFLTHA-GW-SSVVEALQFGMPLIVLTCYA-DQGLNAK--LLEEKQIVELIPRDEGDGFFTRNSVAES 421 (478)
Q Consensus 347 pq~~vL~~~~~~~~ItHg-G~-~s~~eal~~GvP~l~~P~~~-DQ~~na~--~v~~~g~G~~l~~~~~~~~~~~~~l~~~ 421 (478)
+..+++..++++.|-+-= =| -|-+||.+.|||.|.--+.+ -+..+-. .-...|+-+.-... -+.++..+.
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~VvdR~~-----~n~~e~v~~ 536 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVVDRRD-----KNYDESVNQ 536 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE-SSS-----S-HHHHHHH
T ss_pred CHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEEeCCC-----CCHHHHHHH
Confidence 346677777776555521 13 38999999999999877532 2111111 12344666555544 366666666
Q ss_pred HHHHhc-----cc-chHHHHHHHHHHHHHhc
Q 011765 422 LRLVLV-----EE-KGQIYRDKAKEMKGLFG 446 (478)
Q Consensus 422 i~~ll~-----~~-~~~~~~~~a~~~~~~~~ 446 (478)
+.+.|. ++ .-...|++++++++.+-
T Consensus 537 la~~l~~f~~~~~rqri~~Rn~ae~LS~~~d 567 (633)
T PF05693_consen 537 LADFLYKFCQLSRRQRIIQRNRAERLSDLAD 567 (633)
T ss_dssp HHHHHHHHHT--HHHHHHHHHHHHHHGGGGB
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 665553 11 11347888888888763
No 363
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=39.03 E-value=3e+02 Score=25.03 Aligned_cols=85 Identities=25% Similarity=0.298 Sum_probs=53.9
Q ss_pred eEEEEeCcccCCCHHHHHHHHHHH-HhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCc
Q 011765 279 VVYVAFGSEAKPSQEELTEIALGL-ELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSV 357 (478)
Q Consensus 279 ~v~vs~Gs~~~~~~~~~~~~~~al-~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~ 357 (478)
+-...+||..+++++........+ +..+.+|+++++.+. .+|.
T Consensus 32 I~vrv~gsGaKm~pe~~~~~~~~~~~~~~pDf~i~isPN~--------a~PG---------------------------- 75 (277)
T PRK00994 32 IDVRVVGSGAKMGPEEVEEVVKKMLEEWKPDFVIVISPNP--------AAPG---------------------------- 75 (277)
T ss_pred ceEEEeccCCCCCHHHHHHHHHHHHHhhCCCEEEEECCCC--------CCCC----------------------------
Confidence 555668888888998888755544 677888888887542 2221
Q ss_pred eeeeeccChhhHHHHHH-hCCcEeccccccchhhHHHHHhhcCeEEEeeccC
Q 011765 358 GGFLTHAGWSSVVEALQ-FGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDE 408 (478)
Q Consensus 358 ~~~ItHgG~~s~~eal~-~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~ 408 (478)
-...-|.+. +|+|.|++.-..--..- ..+++.|.|..+-+.+
T Consensus 76 --------P~~ARE~l~~~~iP~IvI~D~p~~K~~-d~l~~~g~GYIivk~D 118 (277)
T PRK00994 76 --------PKKAREILKAAGIPCIVIGDAPGKKVK-DAMEEQGLGYIIVKAD 118 (277)
T ss_pred --------chHHHHHHHhcCCCEEEEcCCCccchH-HHHHhcCCcEEEEecC
Confidence 112233332 46788887654332222 6688899999986654
No 364
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.86 E-value=44 Score=31.66 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=38.3
Q ss_pred CCCceeeeeccChhhHHHHHH----hCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcc
Q 011765 354 HDSVGGFLTHAGWSSVVEALQ----FGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVE 428 (478)
Q Consensus 354 ~~~~~~~ItHgG~~s~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~ 428 (478)
.+++ +|+=||=||+..+++ +++|++++-... +|..- + ++++++.+++++++++
T Consensus 63 ~~d~--vi~lGGDGT~L~aa~~~~~~~~Pilgin~G~-------------lGFl~---~----~~~~~~~~~l~~i~~g 119 (292)
T PRK03378 63 QADL--AIVVGGDGNMLGAARVLARYDIKVIGINRGN-------------LGFLT---D----LDPDNALQQLSDVLEG 119 (292)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcCCCCeEEEEECCC-------------CCccc---c----cCHHHHHHHHHHHHcC
Confidence 3455 999999999999985 367887765422 23322 2 5778899999999984
No 365
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=38.77 E-value=36 Score=32.17 Aligned_cols=31 Identities=26% Similarity=0.397 Sum_probs=25.8
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFIST 42 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~ 42 (478)
|||+++..+..| ..+|..|.+.||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 688888877666 5678889999999999986
No 366
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=38.74 E-value=82 Score=28.30 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=21.0
Q ss_pred ccEEEEecCCCcc--CHHHHHHHHHHHHh
Q 011765 6 KLQIAMFPWLAFG--HMIPWLELAKLIAQ 32 (478)
Q Consensus 6 ~~~il~~~~~~~g--H~~p~l~La~~L~~ 32 (478)
+|+||+..|.-.| ..||.-.++++|..
T Consensus 1 m~~ILvTGF~PF~~~~~NPS~~~~~~L~~ 29 (215)
T PRK13197 1 MMKILVTGFDPFGGEKINPSWEAVKQLPG 29 (215)
T ss_pred CCEEEEeeccCCCCCCCCcHHHHHHHccc
Confidence 4688888776553 58999999999954
No 367
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=38.66 E-value=50 Score=33.28 Aligned_cols=35 Identities=23% Similarity=0.093 Sum_probs=28.6
Q ss_pred HHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEE
Q 011765 100 EPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFF 137 (478)
Q Consensus 100 ~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~ 137 (478)
..+.+++++.+||++|.+.. ...+|+++|||++.+
T Consensus 362 ~e~~~~l~~~~~dliiG~s~---~~~~a~~~~ip~~~~ 396 (429)
T cd03466 362 FDIESYAKELKIDVLIGNSY---GRRIAEKLGIPLIRI 396 (429)
T ss_pred HHHHHHHHhcCCCEEEECch---hHHHHHHcCCCEEEe
Confidence 35667777889999999953 568899999999876
No 368
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.49 E-value=1.1e+02 Score=20.55 Aligned_cols=37 Identities=5% Similarity=0.080 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHhccc
Q 011765 431 GQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLKNHRC 467 (478)
Q Consensus 431 ~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (478)
.+.-.+.+.++++.+.++-++-.++..+...|+....
T Consensus 10 HeqQQ~AVE~Iq~lMaeGmSsGEAIa~VA~elRe~hk 46 (60)
T COG3140 10 HEQQQKAVERIQELMAEGMSSGEAIALVAQELRENHK 46 (60)
T ss_pred HHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHhc
Confidence 4667888899999999888888888888888875443
No 369
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=38.18 E-value=39 Score=32.34 Aligned_cols=42 Identities=17% Similarity=0.107 Sum_probs=33.5
Q ss_pred cEEEEecCC--Cc-cCHHHHHHHHHHHHhCCCeEEEEeCCCcccc
Q 011765 7 LQIAMFPWL--AF-GHMIPWLELAKLIAQKGHKIFFISTPRNIDR 48 (478)
Q Consensus 7 ~~il~~~~~--~~-gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 48 (478)
|||+|+.-| .. -+.+-+..|.++.++|||+|.++.+....-.
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l~~~ 45 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGDLSVV 45 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhheEEE
Confidence 688887554 22 6677889999999999999999998877543
No 370
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=38.03 E-value=1.1e+02 Score=29.71 Aligned_cols=118 Identities=14% Similarity=-0.043 Sum_probs=0.0
Q ss_pred ccEEEEecCCCc--cCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCC
Q 011765 6 KLQIAMFPWLAF--GHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDL 83 (478)
Q Consensus 6 ~~~il~~~~~~~--gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~ 83 (478)
++||.+++.++. |=-+-..++.+.+..+|.+|.-+-....-=.-.. +.++. ..-.+...+....
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~~g~eV~Gi~~Gy~GL~~~~----------i~~l~----~~~v~~~~~~GGT 67 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIKEGLEVFGIYNGYLGLLEGD----------IKPLT----REDVDDLINRGGT 67 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHcCCEEEEEecchhhhcCCc----------ceecc----ccchhHHHhcCCe
Q ss_pred ChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEE---EcCCcccHHHHHHHhCCCeEEE
Q 011765 84 PYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLL---FDFAAYWLPARARELGIPSGFF 137 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI---~D~~~~~~~~~A~~lgIP~i~~ 137 (478)
..-.-..........++...+-+++.+.|.+| .|-....+..++++.++|+|.+
T Consensus 68 ~lgssR~~~~~~~e~~~~~~~~l~~~gId~LvvIGGDgS~~gA~~Lae~~~i~vVGv 124 (347)
T COG0205 68 FLGSARFPEFKTEEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEGGIPVVGV 124 (347)
T ss_pred EEeeCCCCCcccHHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHhcCCcEEec
No 371
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=37.95 E-value=1.4e+02 Score=29.64 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=27.3
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCC-CeEEEEeCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKG-HKIFFISTP 43 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rG-h~Vt~~~~~ 43 (478)
+|+|+++--+..|+ .+|.-|+++| ++|++++-.
T Consensus 1 m~~ilviGaG~Vg~-----~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 1 MMKILVIGAGGVGS-----VVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CCcEEEECCchhHH-----HHHHHHHhCCCceEEEEeCC
Confidence 57899987766664 5799999999 999999866
No 372
>PRK13604 luxD acyl transferase; Provisional
Probab=37.90 E-value=64 Score=30.75 Aligned_cols=37 Identities=14% Similarity=0.113 Sum_probs=31.0
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFIS 41 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~ 41 (478)
.+.+.++++++..++-..+..+|+.|.++|..|.-+-
T Consensus 35 ~~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD 71 (307)
T PRK13604 35 KKNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYD 71 (307)
T ss_pred CCCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEec
Confidence 3557788888888887779999999999999998764
No 373
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=37.76 E-value=69 Score=27.17 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=24.1
Q ss_pred eEEEEeCcccCCCHHHHHHHHHHHHhCCC
Q 011765 279 VVYVAFGSEAKPSQEELTEIALGLELSKL 307 (478)
Q Consensus 279 ~v~vs~Gs~~~~~~~~~~~~~~al~~~~~ 307 (478)
.+|+|+||........+.....+|.+.+.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~ 31 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALAD 31 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCC
Confidence 79999999887666778888888887764
No 374
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=37.59 E-value=52 Score=34.12 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=27.8
Q ss_pred HHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEEe
Q 011765 101 PMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFFS 138 (478)
Q Consensus 101 ~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~ 138 (478)
.+.+.+++.+||+||.+. ....+|+++|||++.+.
T Consensus 353 el~~~i~~~~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 353 EVEDAIAEAAPELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHHHHHhcCCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 455667777999999885 46678999999998774
No 375
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=37.45 E-value=50 Score=34.10 Aligned_cols=34 Identities=15% Similarity=0.088 Sum_probs=26.7
Q ss_pred HHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEE
Q 011765 101 PMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFF 137 (478)
Q Consensus 101 ~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~ 137 (478)
.+++++.+.+||++|.+. .+..+|+++|||++.+
T Consensus 428 ~l~~~l~~~~~DlliG~s---~~k~~a~~~giPlir~ 461 (515)
T TIGR01286 428 HLRSLVFTEPVDFLIGNS---YGKYIQRDTLVPLIRI 461 (515)
T ss_pred HHHHHHhhcCCCEEEECc---hHHHHHHHcCCCEEEe
Confidence 345556667899999885 4678899999999876
No 376
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=37.39 E-value=1.3e+02 Score=28.77 Aligned_cols=33 Identities=9% Similarity=0.020 Sum_probs=25.1
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQK--GHKIFFISTPR 44 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~r--Gh~Vt~~~~~~ 44 (478)
+||||+...+.. + .+++.|++. ||+|..+....
T Consensus 1 ~~~vLv~g~~~~-~-----~~~~~l~~~~~g~~vi~~d~~~ 35 (326)
T PRK12767 1 MMNILVTSAGRR-V-----QLVKALKKSLLKGRVIGADISE 35 (326)
T ss_pred CceEEEecCCcc-H-----HHHHHHHHhccCCEEEEECCCC
Confidence 589999887433 2 789999998 49988876654
No 377
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=37.38 E-value=53 Score=33.09 Aligned_cols=36 Identities=14% Similarity=0.253 Sum_probs=28.0
Q ss_pred HHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEEec
Q 011765 101 PMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFFSI 139 (478)
Q Consensus 101 ~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~ 139 (478)
.+.+++++.+||++|.+. ....+|+++|+|++.+..
T Consensus 361 e~~~~i~~~~pdliig~~---~~~~~a~~~gip~~~~~~ 396 (430)
T cd01981 361 EVGDMIARTEPELIFGTQ---MERHIGKRLDIPCAVISA 396 (430)
T ss_pred HHHHHHHhhCCCEEEecc---hhhHHHHHcCCCEEEEeC
Confidence 456677778999999996 355678999999998743
No 378
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=37.32 E-value=49 Score=34.21 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=28.4
Q ss_pred HHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEEec
Q 011765 101 PMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFFSI 139 (478)
Q Consensus 101 ~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~ 139 (478)
.+.+.+++.+||+||.+. ....+|+++|||++.+..
T Consensus 355 ei~~~i~~~~pdliiG~~---~er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 355 EVADAIAALEPELVLGTQ---MERHSAKRLDIPCGVISA 390 (511)
T ss_pred HHHHHHHhcCCCEEEECh---HHHHHHHHcCCCEEEecC
Confidence 455666777999999995 467789999999997744
No 379
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=37.12 E-value=1.9e+02 Score=29.15 Aligned_cols=32 Identities=13% Similarity=0.211 Sum_probs=25.3
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFIST 42 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~ 42 (478)
.||||++..++..| +|++.|++.|++|.++-.
T Consensus 2 ~~kVLvlG~G~re~-----al~~~l~~~g~~v~~~~~ 33 (435)
T PRK06395 2 TMKVMLVGSGGRED-----AIARAIKRSGAILFSVIG 33 (435)
T ss_pred ceEEEEECCcHHHH-----HHHHHHHhCCCeEEEEEC
Confidence 48999988888776 578889888987777643
No 380
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=36.60 E-value=47 Score=30.05 Aligned_cols=47 Identities=21% Similarity=0.317 Sum_probs=33.0
Q ss_pred EeccccccchhhHHHHHhhcCeEEEeeccC----CCCcccHHHHHHHHHHH
Q 011765 379 LIVLTCYADQGLNAKLLEEKQIVELIPRDE----GDGFFTRNSVAESLRLV 425 (478)
Q Consensus 379 ~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~----~~~~~~~~~l~~~i~~l 425 (478)
..++|+..|-+.-|+|+++.||...++-.. +.|+.++..|+.-++++
T Consensus 124 F~VlPY~~~D~v~akrL~d~GcaavMPlgsPIGSg~Gi~n~~~l~~i~~~~ 174 (247)
T PF05690_consen 124 FVVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSGRGIQNPYNLRIIIERA 174 (247)
T ss_dssp -EEEEEE-S-HHHHHHHHHTT-SEBEEBSSSTTT---SSTHHHHHHHHHHG
T ss_pred CEEeecCCCCHHHHHHHHHCCCCEEEecccccccCcCCCCHHHHHHHHHhc
Confidence 368999999999999999999999987764 36677887777666554
No 381
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=36.60 E-value=3.1e+02 Score=24.37 Aligned_cols=148 Identities=13% Similarity=0.075 Sum_probs=75.5
Q ss_pred CceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCC
Q 011765 277 GSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDS 356 (478)
Q Consensus 277 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~ 356 (478)
+++++|..|.++ ..-+..|.+.|.++.++ ... +.+.+.+-....++....--.+...|..++
T Consensus 10 k~vlVvGgG~va-------~rk~~~Ll~~ga~VtVv-sp~----------~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~ 71 (205)
T TIGR01470 10 RAVLVVGGGDVA-------LRKARLLLKAGAQLRVI-AEE----------LESELTLLAEQGGITWLARCFDADILEGAF 71 (205)
T ss_pred CeEEEECcCHHH-------HHHHHHHHHCCCEEEEE-cCC----------CCHHHHHHHHcCCEEEEeCCCCHHHhCCcE
Confidence 558888777655 23334455567765443 321 112222111222443322122334466666
Q ss_pred ceeeeeccChhhHHH-----HHHhCCcEecc--ccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhccc
Q 011765 357 VGGFLTHAGWSSVVE-----ALQFGMPLIVL--TCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEE 429 (478)
Q Consensus 357 ~~~~ItHgG~~s~~e-----al~~GvP~l~~--P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~ 429 (478)
+ +|..-|...+.+ |-..|+|+-++ |-..| +..-..+..-++-+.+....++. .-+..|++.|++++..+
T Consensus 72 l--Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~~~g~l~iaisT~G~sP-~la~~lr~~ie~~l~~~ 147 (205)
T TIGR01470 72 L--VIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIVDRSPVVVAISSGGAAP-VLARLLRERIETLLPPS 147 (205)
T ss_pred E--EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEEEcCCEEEEEECCCCCc-HHHHHHHHHHHHhcchh
Confidence 6 888877764443 34568888432 22222 22222233334555554443122 34467888888888621
Q ss_pred chHHHHHHHHHHHHHhcc
Q 011765 430 KGQIYRDKAKEMKGLFGD 447 (478)
Q Consensus 430 ~~~~~~~~a~~~~~~~~~ 447 (478)
...+.+.+.++++.+.+
T Consensus 148 -~~~~~~~~~~~R~~~k~ 164 (205)
T TIGR01470 148 -LGDLATLAATWRDAVKK 164 (205)
T ss_pred -HHHHHHHHHHHHHHHHh
Confidence 46677777788877753
No 382
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=36.54 E-value=1.7e+02 Score=25.79 Aligned_cols=37 Identities=22% Similarity=0.222 Sum_probs=32.5
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
=+++...++.|=..-++.++..+..+|..|.|++++.
T Consensus 14 i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 14 ITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 3466778889999999999999999999999999986
No 383
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=36.47 E-value=47 Score=31.71 Aligned_cols=35 Identities=29% Similarity=0.323 Sum_probs=28.6
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
.+|||.|+-.+..| ..+|+.|.+.||+|++.....
T Consensus 3 ~~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWG-----STLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCCC
Confidence 46899999777666 578999999999999887543
No 384
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=36.32 E-value=80 Score=28.68 Aligned_cols=40 Identities=23% Similarity=0.536 Sum_probs=24.2
Q ss_pred ccEEEEecCCCc-cCHHH---HHHHHHHHHhCCCeEEEEeCCCc
Q 011765 6 KLQIAMFPWLAF-GHMIP---WLELAKLIAQKGHKIFFISTPRN 45 (478)
Q Consensus 6 ~~~il~~~~~~~-gH~~p---~l~La~~L~~rGh~Vt~~~~~~~ 45 (478)
+..|+|.+..+. .--.| +..|++.|.++|..|.+++++..
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~ 148 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEE 148 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHH
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchH
Confidence 456777766655 22223 68999999999988888887776
No 385
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=36.21 E-value=22 Score=33.69 Aligned_cols=47 Identities=11% Similarity=0.152 Sum_probs=34.2
Q ss_pred ccEEEEecCCCccCHHH--------HHHHHHHHHhCCCeEEEEeCCCccccCCCC
Q 011765 6 KLQIAMFPWLAFGHMIP--------WLELAKLIAQKGHKIFFISTPRNIDRLPRL 52 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p--------~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~ 52 (478)
.-+|++++.+...|..+ ...||++|...|-+|++++.+.....++..
T Consensus 40 ~~~VlI~TGFpv~~~~~~ETDGP~GA~aLa~aL~~lG~~~~ivtd~~~~~~~~~~ 94 (291)
T PF14336_consen 40 AKSVLIVTGFPVPPAPPPETDGPPGAAALARALQALGKEVVIVTDERCAPVVKAA 94 (291)
T ss_pred CCcEEEEeCCCCCCCCCCCCCChHHHHHHHHHHHHcCCeEEEEECHHHHHHHHHH
Confidence 45677765444333322 788999999999999999999887776654
No 386
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.20 E-value=38 Score=31.84 Aligned_cols=54 Identities=15% Similarity=0.155 Sum_probs=0.0
Q ss_pred CceeeeeccChhhHHHHH---HhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchH
Q 011765 356 SVGGFLTHAGWSSVVEAL---QFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQ 432 (478)
Q Consensus 356 ~~~~~ItHgG~~s~~eal---~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~ 432 (478)
.++++|+-||-||+.+++ ..++|+++++ .|..--..+ ++++++.+++.++++ ++
T Consensus 57 ~~d~vi~iGGDGTlL~a~~~~~~~~pi~gIn----------------~G~lGFl~~----~~~~~~~~~l~~i~~---g~ 113 (277)
T PRK03708 57 DVDFIIAIGGDGTILRIEHKTKKDIPILGIN----------------MGTLGFLTE----VEPEETFFALSRLLE---GD 113 (277)
T ss_pred CCCEEEEEeCcHHHHHHHHhcCCCCeEEEEe----------------CCCCCcccc----CCHHHHHHHHHHHHc---CC
No 387
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=36.15 E-value=2.7e+02 Score=23.65 Aligned_cols=34 Identities=9% Similarity=0.070 Sum_probs=23.9
Q ss_pred EecCCCccCHHH-HHHHHHHHHhCCCeEEEEeCCC
Q 011765 11 MFPWLAFGHMIP-WLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 11 ~~~~~~~gH~~p-~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
.+.+...+.... +..+|++|+.+|++|.=+....
T Consensus 3 av~~~~~~~~d~lL~~~a~~L~~~G~rv~G~vQ~~ 37 (159)
T PF10649_consen 3 AVVYDDGGDIDALLAAFAARLRARGVRVAGLVQRN 37 (159)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 444555566666 4568999999999998555443
No 388
>PRK03094 hypothetical protein; Provisional
Probab=36.13 E-value=34 Score=25.18 Aligned_cols=20 Identities=15% Similarity=0.355 Sum_probs=16.6
Q ss_pred HHHHHHHHHhCCCeEEEEeC
Q 011765 23 WLELAKLIAQKGHKIFFIST 42 (478)
Q Consensus 23 ~l~La~~L~~rGh~Vt~~~~ 42 (478)
+..|.+.|+++||+|+=+..
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred cHHHHHHHHHCCCEEEecCc
Confidence 45789999999999986654
No 389
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=35.95 E-value=36 Score=29.55 Aligned_cols=43 Identities=9% Similarity=0.049 Sum_probs=32.6
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCC
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPR 51 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~ 51 (478)
||++.-.++. ..+-...+.+.|+++|++|.++.++...+++..
T Consensus 2 ~I~lgvtGs~-~a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~~ 44 (177)
T TIGR02113 2 KILLAVTGSI-AAYKAADLTSQLTKLGYDVTVLMTQAATQFITP 44 (177)
T ss_pred EEEEEEcCHH-HHHHHHHHHHHHHHCCCEEEEEEChHHHhhccH
Confidence 5655555544 455667999999999999999999987776653
No 390
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=35.89 E-value=72 Score=33.45 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=21.7
Q ss_pred ceeeeeccCh------hhHHHHHHhCCcEeccc
Q 011765 357 VGGFLTHAGW------SSVVEALQFGMPLIVLT 383 (478)
Q Consensus 357 ~~~~ItHgG~------~s~~eal~~GvP~l~~P 383 (478)
.+++++|.|- +.+.+|...++|||++.
T Consensus 77 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 77 PAVCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred CeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 3348888774 47999999999999985
No 391
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=35.74 E-value=3e+02 Score=24.02 Aligned_cols=121 Identities=14% Similarity=0.068 Sum_probs=65.8
Q ss_pred cCHHHHHHHHHHHHhC-CCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCC------CCCCC--CccccCCCChhHH
Q 011765 18 GHMIPWLELAKLIAQK-GHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHV------DNLRE--NAEATIDLPYDEV 88 (478)
Q Consensus 18 gH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~------~~l~~--~~~~~~~~~~~~~ 88 (478)
-.+..+..+|+.+.++ |.++.+.++.+.++.++.+. +-+..+..... ..++. +............
T Consensus 39 ~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gAD------fVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~G 112 (183)
T PF02056_consen 39 ERLEIVERLARRMVEEAGADLKVEATTDRREALEGAD------FVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPG 112 (183)
T ss_dssp HHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTES------EEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHH
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCC------EEEEEeeecchHHHHHHHHHHHHhCCccccccccCcc
Confidence 4556677888888774 89999988888888777543 44444431000 00111 1111001111111
Q ss_pred HHHHHHHhh--hhHHHHHHHhhcCCCEEEEcCCcccHH---HHHHHhC-CCeEEEecchHHHH
Q 011765 89 KYLKQSFDC--LEEPMAKLLQSLAPDWLLFDFAAYWLP---ARARELG-IPSGFFSIFTAATL 145 (478)
Q Consensus 89 ~~~~~~~~~--~~~~l~~ll~~~~pD~vI~D~~~~~~~---~~A~~lg-IP~i~~~~~~~~~~ 145 (478)
.+...... ..-.+.+.+++.-||+-+.....|.++ .+.++.+ ++++.++.++....
T Consensus 113 -G~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~~vt~a~~r~~~~~k~vGlCh~~~~~~ 174 (183)
T PF02056_consen 113 -GFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMGIVTEALSRYTPKIKVVGLCHGPQGTR 174 (183)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHHHHHHHHHHHSTTSEEEEE-SHHHHHH
T ss_pred -HHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHHHHHHHHHHhCCCCCEEEECCCHHHHH
Confidence 22222222 122455556677899999998888654 3455666 99999998776543
No 392
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.62 E-value=52 Score=34.53 Aligned_cols=52 Identities=15% Similarity=0.366 Sum_probs=39.0
Q ss_pred ceeeeeccChhhHHHHHHh----CCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcc
Q 011765 357 VGGFLTHAGWSSVVEALQF----GMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVE 428 (478)
Q Consensus 357 ~~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~ 428 (478)
++++|+-||=||++.|.+. ++|++++-... +|.. .+ ++.+++.+++++++++
T Consensus 349 ~dlvi~lGGDGT~L~aa~~~~~~~~PilGin~G~-------------lGFL---~~----~~~~~~~~~l~~~~~g 404 (569)
T PRK14076 349 ISHIISIGGDGTVLRASKLVNGEEIPIICINMGT-------------VGFL---TE----FSKEEIFKAIDSIISG 404 (569)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEEcCCC-------------CCcC---cc----cCHHHHHHHHHHHHcC
Confidence 4459999999999999774 77888875532 2332 23 6788999999999984
No 393
>PHA02754 hypothetical protein; Provisional
Probab=35.50 E-value=64 Score=21.78 Aligned_cols=27 Identities=15% Similarity=0.506 Sum_probs=20.8
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHHhcccC
Q 011765 420 ESLRLVLVEEKGQIYRDKAKEMKGLFGDKG 449 (478)
Q Consensus 420 ~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~ 449 (478)
+.+.+++. +..|++.++++++.+.+.|
T Consensus 5 eEi~k~i~---eK~Fke~MRelkD~LSe~G 31 (67)
T PHA02754 5 EEIPKAIM---EKDFKEAMRELKDILSEAG 31 (67)
T ss_pred HHHHHHHH---HhHHHHHHHHHHHHHhhCc
Confidence 34556667 6889999999999987655
No 394
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=35.46 E-value=27 Score=33.82 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=30.4
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPR 51 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~ 51 (478)
+|||.|+..+..| ..+|..|.++||+|+++......+.+.+
T Consensus 2 ~mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~~~~~~~~~ 42 (341)
T PRK08229 2 MARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRARIGDELRA 42 (341)
T ss_pred CceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecHHHHHHHHh
Confidence 4789999877776 4578889999999999986543333333
No 395
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=35.38 E-value=98 Score=27.20 Aligned_cols=43 Identities=14% Similarity=0.028 Sum_probs=29.8
Q ss_pred hhhhHHHHHHHhhcCCCEEEEcC-C-cccHHHHHHHhCCCeEEEe
Q 011765 96 DCLEEPMAKLLQSLAPDWLLFDF-A-AYWLPARARELGIPSGFFS 138 (478)
Q Consensus 96 ~~~~~~l~~ll~~~~pD~vI~D~-~-~~~~~~~A~~lgIP~i~~~ 138 (478)
..+...+.+.+...++|+|++=. - .+.|..+|..+|+|++...
T Consensus 36 ~~v~~~l~~~~~~~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~vR 80 (191)
T TIGR01744 36 QEVGEEFARRFADDGITKIVTIEASGIAPAIMTGLKLGVPVVFAR 80 (191)
T ss_pred HHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 33444555556667899998542 2 2357788999999999873
No 396
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=35.34 E-value=77 Score=28.61 Aligned_cols=35 Identities=17% Similarity=0.166 Sum_probs=29.2
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCe-EEEEe
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHK-IFFIS 41 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~-Vt~~~ 41 (478)
.-|+|...|..|--.....|.++|+++||+ ++.+.
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii 37 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRII 37 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEe
Confidence 357888999999999999999999999986 44433
No 397
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=35.31 E-value=61 Score=29.20 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=37.7
Q ss_pred eccccccchhhHHHHHhhcCeEEEeeccC----CCCcccHHHHHHHHHHH
Q 011765 380 IVLTCYADQGLNAKLLEEKQIVELIPRDE----GDGFFTRNSVAESLRLV 425 (478)
Q Consensus 380 l~~P~~~DQ~~na~~v~~~g~G~~l~~~~----~~~~~~~~~l~~~i~~l 425 (478)
+++|+..|-+.-|+|+++.||...++-.. +.|..|+..|.--++++
T Consensus 132 ~VlPY~~dD~v~arrLee~GcaavMPl~aPIGSg~G~~n~~~l~iiie~a 181 (262)
T COG2022 132 VVLPYTTDDPVLARRLEEAGCAAVMPLGAPIGSGLGLQNPYNLEIIIEEA 181 (262)
T ss_pred EEeeccCCCHHHHHHHHhcCceEeccccccccCCcCcCCHHHHHHHHHhC
Confidence 68999999999999999999999997654 35667887777666654
No 398
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=35.25 E-value=58 Score=26.75 Aligned_cols=42 Identities=12% Similarity=0.009 Sum_probs=36.5
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccc
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNID 47 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 47 (478)
+.+|++-+..+-+|-.----++..|...|++|+........+
T Consensus 1 ~~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e 42 (134)
T TIGR01501 1 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQE 42 (134)
T ss_pred CCeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHH
Confidence 358999999999999999999999999999999988765543
No 399
>PRK06756 flavodoxin; Provisional
Probab=35.24 E-value=70 Score=26.54 Aligned_cols=37 Identities=16% Similarity=0.112 Sum_probs=29.1
Q ss_pred ccEEEEecCCCccCHHHHH-HHHHHHHhCCCeEEEEeC
Q 011765 6 KLQIAMFPWLAFGHMIPWL-ELAKLIAQKGHKIFFIST 42 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l-~La~~L~~rGh~Vt~~~~ 42 (478)
+|||+++=...+||..-+. .|++.|.++|++|.+...
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~ 38 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDI 38 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeeh
Confidence 3688888777899998854 568889889999887643
No 400
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=35.17 E-value=66 Score=32.15 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=32.4
Q ss_pred CccEEEEecC--CCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 5 SKLQIAMFPW--LAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 5 ~~~~il~~~~--~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
++|+|+.+.. ++.|-..-...||..|+.+|++|.++-.+.
T Consensus 119 ~~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDp 160 (405)
T PRK13869 119 EHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDP 160 (405)
T ss_pred CCceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCC
Confidence 3567655543 577999999999999999999999986554
No 401
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=35.15 E-value=84 Score=27.52 Aligned_cols=40 Identities=18% Similarity=0.306 Sum_probs=28.8
Q ss_pred HHHHHHHhhcCCC--EEEEcCCcc-cHHHHHHHhCCCeEEEec
Q 011765 100 EPMAKLLQSLAPD--WLLFDFAAY-WLPARARELGIPSGFFSI 139 (478)
Q Consensus 100 ~~l~~ll~~~~pD--~vI~D~~~~-~~~~~A~~lgIP~i~~~~ 139 (478)
..+.+++++..++ ++|...+.. +|..+|+++++|.|.+.|
T Consensus 47 ~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~avLiNP 89 (187)
T PF05728_consen 47 AQLEQLIEELKPENVVLIGSSLGGFYATYLAERYGLPAVLINP 89 (187)
T ss_pred HHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcC
Confidence 3556677776665 666665544 577899999999988855
No 402
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=35.02 E-value=1.3e+02 Score=28.38 Aligned_cols=27 Identities=15% Similarity=0.259 Sum_probs=20.0
Q ss_pred eeeeeccChhhHHHHHHh-----CCcEec-ccc
Q 011765 358 GGFLTHAGWSSVVEALQF-----GMPLIV-LTC 384 (478)
Q Consensus 358 ~~~ItHgG~~s~~eal~~-----GvP~l~-~P~ 384 (478)
+++|.-||=||+.|++.. ..|.++ +|.
T Consensus 59 d~ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 59 DTVIAGGGDGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred CEEEEECCCChHHHHHHHHhcCCCCCcEEEEcC
Confidence 349999999999997653 345554 895
No 403
>PRK05114 hypothetical protein; Provisional
Probab=34.95 E-value=1.3e+02 Score=20.38 Aligned_cols=36 Identities=6% Similarity=0.082 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHhcc
Q 011765 431 GQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLKNHR 466 (478)
Q Consensus 431 ~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 466 (478)
.++-.+.+.++++++..+-++-.|+..+.+.|+...
T Consensus 10 HeeQQ~AVErIq~LMaqGmSsgEAI~~VA~eiRe~~ 45 (59)
T PRK05114 10 HEQQQKAVERIQELMAQGMSSGEAIALVAEELRANH 45 (59)
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHH
Confidence 467788999999999999999999999999887544
No 404
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=34.93 E-value=3.7e+02 Score=29.05 Aligned_cols=34 Identities=26% Similarity=0.289 Sum_probs=27.8
Q ss_pred EEEEecCC-CccCHHHHHHHHHHHHhCCCeEEEEe
Q 011765 8 QIAMFPWL-AFGHMIPWLELAKLIAQKGHKIFFIS 41 (478)
Q Consensus 8 ~il~~~~~-~~gH~~p~l~La~~L~~rGh~Vt~~~ 41 (478)
.|++.+.. ..|-..-.+.|++.|.++|.+|.++=
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fK 38 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFK 38 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeC
Confidence 46666444 45999999999999999999999864
No 405
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=34.87 E-value=3.6e+02 Score=24.64 Aligned_cols=85 Identities=24% Similarity=0.294 Sum_probs=48.1
Q ss_pred eEEEEeCcccCCCHHHHHHHHHHH-HhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCc
Q 011765 279 VVYVAFGSEAKPSQEELTEIALGL-ELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSV 357 (478)
Q Consensus 279 ~v~vs~Gs~~~~~~~~~~~~~~al-~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~ 357 (478)
+=...+||..++.++.++...... +..+.+|+++++.+ ..+|
T Consensus 31 I~vrv~gsGaKm~pe~~e~~~~~~~~~~~pdf~I~isPN--------~~~P----------------------------- 73 (276)
T PF01993_consen 31 IDVRVVGSGAKMGPEDVEEVVTKMLKEWDPDFVIVISPN--------AAAP----------------------------- 73 (276)
T ss_dssp EEEEEEEEET--SHHHHHHHHHHHHHHH--SEEEEE-S---------TTSH-----------------------------
T ss_pred ceEEEeccCCCCCHHHHHHHHHHHHHhhCCCEEEEECCC--------CCCC-----------------------------
Confidence 555668888888998887755444 56788888887653 1222
Q ss_pred eeeeeccChhhHHHHH-HhCCcEeccccccchhhHHHHHhhcCeEEEeeccC
Q 011765 358 GGFLTHAGWSSVVEAL-QFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDE 408 (478)
Q Consensus 358 ~~~ItHgG~~s~~eal-~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~ 408 (478)
|-...-|.+ ..|+|.|++.-..--.. -..+++.|.|..+-+.+
T Consensus 74 -------GP~~ARE~l~~~~iP~IvI~D~p~~k~-kd~l~~~g~GYIivk~D 117 (276)
T PF01993_consen 74 -------GPTKAREMLSAKGIPCIVISDAPTKKA-KDALEEEGFGYIIVKAD 117 (276)
T ss_dssp -------HHHHHHHHHHHSSS-EEEEEEGGGGGG-HHHHHHTT-EEEEETTS
T ss_pred -------CcHHHHHHHHhCCCCEEEEcCCCchhh-HHHHHhcCCcEEEEecC
Confidence 122233444 47889888765432222 24588899999986654
No 406
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=34.87 E-value=70 Score=28.20 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=30.4
Q ss_pred cEEEEe--cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 011765 7 LQIAMF--PWLAFGHMIPWLELAKLIAQKGHKIFFISTPRN 45 (478)
Q Consensus 7 ~~il~~--~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~ 45 (478)
+|++.+ +-++.|-..-...||..|+++|++|.++-....
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~ 57 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMR 57 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 565554 344668899999999999999999998866543
No 407
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.
Probab=34.86 E-value=1.1e+02 Score=26.93 Aligned_cols=27 Identities=15% Similarity=0.144 Sum_probs=20.5
Q ss_pred cEEEEecCCCc--cCHHHHHHHHHHHHhC
Q 011765 7 LQIAMFPWLAF--GHMIPWLELAKLIAQK 33 (478)
Q Consensus 7 ~~il~~~~~~~--gH~~p~l~La~~L~~r 33 (478)
|+||+..|+-. --.||...++++|...
T Consensus 1 ~~vLvTGF~PF~~~~~NpS~~~v~~L~~~ 29 (194)
T cd00501 1 KKVLVTGFGPFGGEPVNPSWEAVKELPKL 29 (194)
T ss_pred CEEEEEecCCCCCCCCChHHHHHHhcccc
Confidence 67888766644 2579999999999764
No 408
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=34.75 E-value=3.2e+02 Score=28.83 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=36.8
Q ss_pred hhhhHHHHHHHhhcCCCEEE----EcCCcccHHHHHHHhCCCeEEEecchHH
Q 011765 96 DCLEEPMAKLLQSLAPDWLL----FDFAAYWLPARARELGIPSGFFSIFTAA 143 (478)
Q Consensus 96 ~~~~~~l~~ll~~~~pD~vI----~D~~~~~~~~~A~~lgIP~i~~~~~~~~ 143 (478)
+.+...++..++...+|.+| ||-..+..+++|.+++||.|++.-.+..
T Consensus 97 elIAdsiE~~~~a~~~Dg~V~i~~CDK~~PG~lMaaarlniPsi~v~gGpm~ 148 (615)
T PRK12448 97 ELIADSVEYMVNAHCADAMVCISNCDKITPGMLMAALRLNIPVVFVSGGPME 148 (615)
T ss_pred HHHHHHHHHHhhCCCcceEEEeccCCCchHHHHHHHHhcCCCEEEEeCCCcC
Confidence 44555666777888899998 6766776778899999999998766543
No 409
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=34.63 E-value=1.3e+02 Score=25.39 Aligned_cols=104 Identities=19% Similarity=0.176 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhH
Q 011765 290 PSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSV 369 (478)
Q Consensus 290 ~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~ 369 (478)
..++.+.++++..+..+..++++..+. .+.+|.-+- ..-.-.|+-+ |-. . -.-+|+.++
T Consensus 37 Rtp~~~~~~~~~a~~~g~~viIa~AG~-------aa~Lpgvva-~~t~~PVIgv---P~~-------~---~~l~G~daL 95 (156)
T TIGR01162 37 RTPELMLEYAKEAEERGIKVIIAGAGG-------AAHLPGMVA-ALTPLPVIGV---PVP-------S---KALSGLDSL 95 (156)
T ss_pred cCHHHHHHHHHHHHHCCCeEEEEeCCc-------cchhHHHHH-hccCCCEEEe---cCC-------c---cCCCCHHHH
Confidence 356888888888877788888887764 345553111 1111112211 110 0 124688888
Q ss_pred HHHHH--hCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhc
Q 011765 370 VEALQ--FGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLV 427 (478)
Q Consensus 370 ~eal~--~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~ 427 (478)
.-.+. .|+|+-.+ ..|...||..+.-. .+ . +...+|.+++++.-.
T Consensus 96 lS~vqmP~gvpvatv--~I~~~~nAa~~Aaq----Il---~----~~d~~l~~kl~~~r~ 142 (156)
T TIGR01162 96 LSIVQMPSGVPVATV--AIGNAGNAALLAAQ----IL---G----IKDPELAEKLKEYRE 142 (156)
T ss_pred HHHhcCCCCCeeEEE--EcCChhHHHHHHHH----HH---c----CCCHHHHHHHHHHHH
Confidence 88888 89995444 44577888876321 22 2 466777777765544
No 410
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=34.54 E-value=38 Score=34.71 Aligned_cols=37 Identities=30% Similarity=0.310 Sum_probs=31.8
Q ss_pred CCCCCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011765 1 MADNSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFIST 42 (478)
Q Consensus 1 ~~~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~ 42 (478)
|++++.++|.|+-.+..| .++|+.|.++||+|+++--
T Consensus 1 ~~~~~~~~IG~IGLG~MG-----~~mA~nL~~~G~~V~V~NR 37 (493)
T PLN02350 1 MASAALSRIGLAGLAVMG-----QNLALNIAEKGFPISVYNR 37 (493)
T ss_pred CCCCCCCCEEEEeeHHHH-----HHHHHHHHhCCCeEEEECC
Confidence 889899999998887666 5789999999999998753
No 411
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=34.53 E-value=41 Score=30.67 Aligned_cols=44 Identities=7% Similarity=-0.074 Sum_probs=32.7
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCccccCCCC
Q 011765 9 IAMFPWLAFGHMIPWLELAKLIAQK--GHKIFFISTPRNIDRLPRL 52 (478)
Q Consensus 9 il~~~~~~~gH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~ 52 (478)
|++.-.++.+=++-...|++.|+++ ||+|.++.++...+++...
T Consensus 2 i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~~ 47 (234)
T TIGR02700 2 IGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRMY 47 (234)
T ss_pred eEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhhh
Confidence 3433333333347899999999999 9999999999888777654
No 412
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=34.52 E-value=4.2e+02 Score=25.97 Aligned_cols=125 Identities=14% Similarity=0.039 Sum_probs=77.3
Q ss_pred CcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCC-hhhhhcCCCceeeeec
Q 011765 285 GSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAP-QLAILAHDSVGGFLTH 363 (478)
Q Consensus 285 Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vp-q~~vL~~~~~~~~ItH 363 (478)
|-.+-.+.+++..+++.++..+.+++....... ..-|.+|. ++-. .|.. ..++.....+..+.+=
T Consensus 124 Gpc~iE~~~~~~~~A~~lk~~g~~~~r~~~~kp-------Rtsp~~f~------g~~~-e~l~~L~~~~~~~Gl~~~t~v 189 (360)
T PRK12595 124 GPCSVESYEQVEAVAKALKAKGLKLLRGGAFKP-------RTSPYDFQ------GLGV-EGLKILKQVADEYGLAVISEI 189 (360)
T ss_pred ecccccCHHHHHHHHHHHHHcCCcEEEccccCC-------CCCCcccc------CCCH-HHHHHHHHHHHHcCCCEEEee
Confidence 544445788899999999988888776433221 11111111 0000 1111 1222333455445555
Q ss_pred cChhhHHHHHHhCCcEeccccc-cchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhc
Q 011765 364 AGWSSVVEALQFGMPLIVLTCY-ADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLV 427 (478)
Q Consensus 364 gG~~s~~eal~~GvP~l~~P~~-~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~ 427 (478)
...-++-.+..+ ++++-+|-. ..|..-...+...|.=+.+.... ..|.+++..+++.+.+
T Consensus 190 ~d~~~~~~l~~~-vd~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~---~~t~~e~~~Ave~i~~ 250 (360)
T PRK12595 190 VNPADVEVALDY-VDVIQIGARNMQNFELLKAAGRVNKPVLLKRGL---SATIEEFIYAAEYIMS 250 (360)
T ss_pred CCHHHHHHHHHh-CCeEEECcccccCHHHHHHHHccCCcEEEeCCC---CCCHHHHHHHHHHHHH
Confidence 555667777777 999999954 46677778888888888887763 1489999999999886
No 413
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.37 E-value=62 Score=30.14 Aligned_cols=52 Identities=10% Similarity=0.098 Sum_probs=37.5
Q ss_pred eeeeeccChhhHHHHHHh-----CCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcc
Q 011765 358 GGFLTHAGWSSVVEALQF-----GMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVE 428 (478)
Q Consensus 358 ~~~ItHgG~~s~~eal~~-----GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~ 428 (478)
+++|+=||=||++.|++. .+|++++-..+ .+|.. .+ ++.+++.+++++++++
T Consensus 41 D~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G------------~lGFL---~~----~~~~~~~~~l~~i~~g 97 (264)
T PRK03501 41 NIIVSIGGDGTFLQAVRKTGFREDCLYAGISTKD------------QLGFY---CD----FHIDDLDKMIQAITKE 97 (264)
T ss_pred cEEEEECCcHHHHHHHHHhcccCCCeEEeEecCC------------CCeEc---cc----CCHHHHHHHHHHHHcC
Confidence 449999999999999874 56766655411 23433 22 5788999999999984
No 414
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=34.35 E-value=83 Score=26.96 Aligned_cols=38 Identities=11% Similarity=-0.030 Sum_probs=26.3
Q ss_pred CCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011765 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFIST 42 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~ 42 (478)
++..+|++++.++. ---=-+.+|+.|.++|++|+++..
T Consensus 23 ~~~~~v~il~G~Gn-NGgDgl~~AR~L~~~G~~V~v~~~ 60 (169)
T PF03853_consen 23 PKGPRVLILCGPGN-NGGDGLVAARHLANRGYNVTVYLV 60 (169)
T ss_dssp CTT-EEEEEE-SSH-HHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cCCCeEEEEECCCC-ChHHHHHHHHHHHHCCCeEEEEEE
Confidence 34568888887763 112367889999999999998443
No 415
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=34.34 E-value=52 Score=26.16 Aligned_cols=33 Identities=12% Similarity=0.073 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCCccccCCCC
Q 011765 20 MIPWLELAKLIAQKGHKIFFISTPRNIDRLPRL 52 (478)
Q Consensus 20 ~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~ 52 (478)
+.|+..|.=.+.-|||++|++.+..+.+.+..-
T Consensus 9 Vk~L~eIll~FilrGHKT~vyLP~yY~~~~~~~ 41 (122)
T PF14626_consen 9 VKALVEILLHFILRGHKTVVYLPKYYKNYVDDG 41 (122)
T ss_pred HHHHHHHHHHHHhccCeeEEEChHHHhcccccc
Confidence 456777777778899999999999988766543
No 416
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=34.32 E-value=62 Score=32.46 Aligned_cols=33 Identities=24% Similarity=0.357 Sum_probs=26.3
Q ss_pred HHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEEe
Q 011765 103 AKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFFS 138 (478)
Q Consensus 103 ~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~ 138 (478)
.+.+++.+||++|.. +.+..+|+++|||.+.+.
T Consensus 343 ~~~~~~~~pDl~Ig~---s~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 343 IAAVEEYRPDLAIGT---TPLVQYAKEKGIPALYYT 375 (416)
T ss_pred HHHHhhcCCCEEEeC---ChhhHHHHHhCCCEEEec
Confidence 344567799999988 347789999999999763
No 417
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=34.30 E-value=76 Score=23.65 Aligned_cols=36 Identities=8% Similarity=0.047 Sum_probs=28.5
Q ss_pred ccEEEEecCCCc--cCHHHHHHHHHHHHhCCCeEEEEe
Q 011765 6 KLQIAMFPWLAF--GHMIPWLELAKLIAQKGHKIFFIS 41 (478)
Q Consensus 6 ~~~il~~~~~~~--gH~~p~l~La~~L~~rGh~Vt~~~ 41 (478)
|-+|.++|.... .+..-...+++.|++.|..|.+-.
T Consensus 1 P~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~ 38 (94)
T cd00861 1 PFDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDD 38 (94)
T ss_pred CeEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 347888887753 566778999999999999998744
No 418
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.27 E-value=57 Score=30.52 Aligned_cols=51 Identities=16% Similarity=0.203 Sum_probs=36.8
Q ss_pred eeeeeccChhhHHHHHHh-CCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcc
Q 011765 358 GGFLTHAGWSSVVEALQF-GMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVE 428 (478)
Q Consensus 358 ~~~ItHgG~~s~~eal~~-GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~ 428 (478)
+++|+=||-||+..|.+. ..|++++-.. .+|... + ++.+++.+++++++++
T Consensus 54 D~vi~lGGDGT~L~a~~~~~~PilGIN~G-------------~lGFL~---~----~~~~~~~~~l~~i~~g 105 (271)
T PRK01185 54 DVIITIGGDGTILRTLQRAKGPILGINMG-------------GLGFLT---E----IEIDEVGSAIKKLIRG 105 (271)
T ss_pred CEEEEEcCcHHHHHHHHHcCCCEEEEECC-------------CCccCc---c----cCHHHHHHHHHHHHcC
Confidence 449999999999999884 5677665431 123222 2 6789999999999984
No 419
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=34.15 E-value=46 Score=33.13 Aligned_cols=46 Identities=13% Similarity=0.057 Sum_probs=37.2
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCC
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPR 51 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~ 51 (478)
+++||++.-.++. ..+-...+.+.|++.|++|.++.++...+++..
T Consensus 5 ~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~ 50 (399)
T PRK05579 5 AGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFVTP 50 (399)
T ss_pred CCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHhH
Confidence 4578888766655 566789999999999999999999988777654
No 420
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=34.05 E-value=3.1e+02 Score=23.73 Aligned_cols=118 Identities=14% Similarity=0.008 Sum_probs=57.6
Q ss_pred hhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEec
Q 011765 265 RSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTS 344 (478)
Q Consensus 265 ~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~ 344 (478)
.++-++|...+ ..+|+-|. ..-.+..+.++....+-+++=++..... ....+. . .....+++.
T Consensus 22 ~~lG~~la~~g---~~lV~GGg----~~GlM~a~a~ga~~~gG~viGi~p~~l~-----~~~~~~----~-~~~~~i~~~ 84 (178)
T TIGR00730 22 AELGAYLAGQG---WGLVYGGG----RVGLMGAIADAAMENGGTAVGVNPSGLF-----SGEVVH----Q-NLTELIEVN 84 (178)
T ss_pred HHHHHHHHHCC---CEEEECCC----hHhHHHHHHHHHHhcCCeEEEecchhhh-----hhhccC----C-CCCceEEEC
Confidence 34556665543 55555653 2344566777776666666555432110 000000 0 001233333
Q ss_pred cCC-hhhhhcCCCceeeeeccChhhHHHHHH---------hCCcEecccc--ccch-hhHHHHHhhcC
Q 011765 345 WAP-QLAILAHDSVGGFLTHAGWSSVVEALQ---------FGMPLIVLTC--YADQ-GLNAKLLEEKQ 399 (478)
Q Consensus 345 ~vp-q~~vL~~~~~~~~ItHgG~~s~~eal~---------~GvP~l~~P~--~~DQ-~~na~~v~~~g 399 (478)
... ...+|...+-.+++-=||.||+-|.+. +.+|++++=. ++|+ ...-..+.+.|
T Consensus 85 ~~~~Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~g 152 (178)
T TIGR00730 85 GMHERKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEG 152 (178)
T ss_pred CHHHHHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCC
Confidence 333 344444333234556688999998843 4889988742 2333 22334555555
No 421
>PRK08818 prephenate dehydrogenase; Provisional
Probab=34.00 E-value=4.3e+02 Score=26.05 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=23.7
Q ss_pred ccEEEEecC-CCccCHHHHHHHHHHHHhC-CCeEEEEeC
Q 011765 6 KLQIAMFPW-LAFGHMIPWLELAKLIAQK-GHKIFFIST 42 (478)
Q Consensus 6 ~~~il~~~~-~~~gH~~p~l~La~~L~~r-Gh~Vt~~~~ 42 (478)
.++|+|+.. +..|- .+|+.|+++ |++|+-+..
T Consensus 4 ~~~I~IIGl~GliGg-----slA~alk~~~~~~V~g~D~ 37 (370)
T PRK08818 4 QPVVGIVGSAGAYGR-----WLARFLRTRMQLEVIGHDP 37 (370)
T ss_pred CCEEEEECCCCHHHH-----HHHHHHHhcCCCEEEEEcC
Confidence 468999988 66664 578899875 888876543
No 422
>PRK13236 nitrogenase reductase; Reviewed
Probab=33.94 E-value=84 Score=29.81 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=33.6
Q ss_pred CCCCCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 011765 1 MADNSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRN 45 (478)
Q Consensus 1 ~~~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~ 45 (478)
|.+.+...|.|..=++.|-..-..+||-.|+++|++|.++--+..
T Consensus 1 ~~~~~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q 45 (296)
T PRK13236 1 MTDENIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPK 45 (296)
T ss_pred CCCcCceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCC
Confidence 444444344555556779999999999999999999999865543
No 423
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=33.88 E-value=1.9e+02 Score=31.13 Aligned_cols=40 Identities=10% Similarity=-0.093 Sum_probs=23.8
Q ss_pred HHHHHHhhcCCCEEEEcCCcc-cHHHHHHHhCCCeEEEecc
Q 011765 101 PMAKLLQSLAPDWLLFDFAAY-WLPARARELGIPSGFFSIF 140 (478)
Q Consensus 101 ~l~~ll~~~~pD~vI~D~~~~-~~~~~A~~lgIP~i~~~~~ 140 (478)
...+.+++.+||++|+-.+.. ....+-......++-++++
T Consensus 66 ~~~~~l~~~~~D~iv~~~~~~ii~~~il~~~~~g~iN~H~s 106 (660)
T PRK08125 66 LWVERIRELAPDVIFSFYYRNLLSDEILQLAPAGAFNLHGS 106 (660)
T ss_pred HHHHHHHhcCCCEEEEccccccCCHHHHhhcCCCEEEEeCC
Confidence 344557788999998765422 2233334445556777665
No 424
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=33.77 E-value=1.6e+02 Score=26.36 Aligned_cols=35 Identities=17% Similarity=0.064 Sum_probs=24.3
Q ss_pred CCCEEEEcC--CcccHHHHHHHhCCCeEEEecchHHH
Q 011765 110 APDWLLFDF--AAYWLPARARELGIPSGFFSIFTAAT 144 (478)
Q Consensus 110 ~pD~vI~D~--~~~~~~~~A~~lgIP~i~~~~~~~~~ 144 (478)
.||+||.-. ....++.=|..+|||.|.+..+.+..
T Consensus 143 ~P~~vii~~~~~~~~~i~Ea~~l~IP~i~i~Dtn~~~ 179 (211)
T PF00318_consen 143 LPDLVIILDPNKNKNAIREANKLNIPTIAIVDTNCNP 179 (211)
T ss_dssp SBSEEEESSTTTTHHHHHHHHHTTS-EEEEESTTS-G
T ss_pred cCcEEEEecccccchhHHHHHhcCceEEEeecCCCCc
Confidence 499997553 23356777999999999997766543
No 425
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=33.71 E-value=1.4e+02 Score=25.25 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=21.3
Q ss_pred ceeeeeccCh------hhHHHHHHhCCcEecccc
Q 011765 357 VGGFLTHAGW------SSVVEALQFGMPLIVLTC 384 (478)
Q Consensus 357 ~~~~ItHgG~------~s~~eal~~GvP~l~~P~ 384 (478)
..++++|.|- +.+.+|...++|||++.-
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 3347777664 478899999999999963
No 426
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=33.42 E-value=93 Score=26.53 Aligned_cols=43 Identities=14% Similarity=0.103 Sum_probs=32.3
Q ss_pred hhhHHHHHHHhhcCCCEEEEcCCcc---cHHHHHHHhCCCeEEEec
Q 011765 97 CLEEPMAKLLQSLAPDWLLFDFAAY---WLPARARELGIPSGFFSI 139 (478)
Q Consensus 97 ~~~~~l~~ll~~~~pD~vI~D~~~~---~~~~~A~~lgIP~i~~~~ 139 (478)
.....+.+++++.+||+|+.-.... .+..+|.+||.|++.-..
T Consensus 70 ~~a~al~~~i~~~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~ 115 (168)
T cd01715 70 PYAPALVALAKKEKPSHILAGATSFGKDLAPRVAAKLDVGLISDVT 115 (168)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCccccchHHHHHHHhCCCceeeEE
Confidence 3455677777788899999775433 467889999999997644
No 427
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=33.22 E-value=73 Score=32.17 Aligned_cols=34 Identities=26% Similarity=0.237 Sum_probs=26.6
Q ss_pred HHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEEe
Q 011765 102 MAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFFS 138 (478)
Q Consensus 102 l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~ 138 (478)
+.+.++..+||++|... ....+|+++|||++.+.
T Consensus 369 ~~~~i~~~~pDliiG~s---~~~~~a~~~gip~v~~~ 402 (435)
T cd01974 369 LRSLLFTEPVDLLIGNT---YGKYIARDTDIPLVRFG 402 (435)
T ss_pred HHHHHhhcCCCEEEECc---cHHHHHHHhCCCEEEee
Confidence 45556667899999985 36788999999998763
No 428
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=33.22 E-value=7.4 Score=21.10 Aligned_cols=17 Identities=24% Similarity=0.700 Sum_probs=13.9
Q ss_pred ChhhHHHHHHhCCcEec
Q 011765 365 GWSSVVEALQFGMPLIV 381 (478)
Q Consensus 365 G~~s~~eal~~GvP~l~ 381 (478)
|.|++...|+.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 67899999999998776
No 429
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=33.20 E-value=71 Score=29.32 Aligned_cols=44 Identities=20% Similarity=0.259 Sum_probs=35.1
Q ss_pred eccccccchhhHHHHHhhcCeEEEeeccC----CCCcccHHHHHHHHH
Q 011765 380 IVLTCYADQGLNAKLLEEKQIVELIPRDE----GDGFFTRNSVAESLR 423 (478)
Q Consensus 380 l~~P~~~DQ~~na~~v~~~g~G~~l~~~~----~~~~~~~~~l~~~i~ 423 (478)
.++|+..|-+.-|+|+++.||...++-.. +.|+.++..|+--++
T Consensus 139 ~VlPY~~~D~v~a~rLed~Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~e 186 (267)
T CHL00162 139 TVLPYINADPMLAKHLEDIGCATVMPLGSPIGSGQGLQNLLNLQIIIE 186 (267)
T ss_pred EEeecCCCCHHHHHHHHHcCCeEEeeccCcccCCCCCCCHHHHHHHHH
Confidence 68999999999999999999999987764 366677777665544
No 430
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=32.77 E-value=90 Score=28.96 Aligned_cols=41 Identities=22% Similarity=0.270 Sum_probs=31.4
Q ss_pred hHHHHHHHhhcCCCEEEEcCC------cccHHHHHHHhCCCeEEEec
Q 011765 99 EEPMAKLLQSLAPDWLLFDFA------AYWLPARARELGIPSGFFSI 139 (478)
Q Consensus 99 ~~~l~~ll~~~~pD~vI~D~~------~~~~~~~A~~lgIP~i~~~~ 139 (478)
...+.+.+++.++|+|++.-. .--+..+|+.||+|++.+..
T Consensus 100 a~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~ 146 (260)
T COG2086 100 AKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVS 146 (260)
T ss_pred HHHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEE
Confidence 346777888899999996532 22467899999999998755
No 431
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=32.66 E-value=46 Score=30.14 Aligned_cols=26 Identities=15% Similarity=0.305 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 19 HMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 19 H~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
|+..|...|++|.++|++|.++....
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 67789999999999999999976654
No 432
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=32.59 E-value=74 Score=31.24 Aligned_cols=36 Identities=25% Similarity=0.261 Sum_probs=26.5
Q ss_pred CCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
+++|+|++. ++.|.+ -..|++.|.++||+|+.+...
T Consensus 19 ~~~~~IlVt--GgtGfI--G~~l~~~L~~~G~~V~~v~r~ 54 (370)
T PLN02695 19 SEKLRICIT--GAGGFI--ASHIARRLKAEGHYIIASDWK 54 (370)
T ss_pred CCCCEEEEE--CCccHH--HHHHHHHHHhCCCEEEEEEec
Confidence 357899887 344443 357899999999999988743
No 433
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=32.51 E-value=1.1e+02 Score=32.41 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=22.0
Q ss_pred ceeeeeccCh------hhHHHHHHhCCcEeccc
Q 011765 357 VGGFLTHAGW------SSVVEALQFGMPLIVLT 383 (478)
Q Consensus 357 ~~~~ItHgG~------~s~~eal~~GvP~l~~P 383 (478)
.+++++|.|- +.+.+|.+.++|||++.
T Consensus 64 ~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 64 VGVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 3448888774 58899999999999984
No 434
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=32.42 E-value=89 Score=28.27 Aligned_cols=42 Identities=21% Similarity=0.282 Sum_probs=26.8
Q ss_pred HHHHHHhhcCCCEEEEcCCcc--cHHHHH----HHhCCCeEEEecchH
Q 011765 101 PMAKLLQSLAPDWLLFDFAAY--WLPARA----RELGIPSGFFSIFTA 142 (478)
Q Consensus 101 ~l~~ll~~~~pD~vI~D~~~~--~~~~~A----~~lgIP~i~~~~~~~ 142 (478)
.....+++++||++|+-.-.. +|...| ...|||+|+++-.+.
T Consensus 51 ~~~~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~ 98 (277)
T PRK00994 51 VVKKMLEEWKPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPG 98 (277)
T ss_pred HHHHHHHhhCCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCc
Confidence 344566789999998664332 333444 445999999866443
No 435
>PLN02293 adenine phosphoribosyltransferase
Probab=32.41 E-value=1.3e+02 Score=26.28 Aligned_cols=41 Identities=7% Similarity=-0.130 Sum_probs=28.7
Q ss_pred hhhHHHHHHHhhcCCCEEEEcC-C-cccHHHHHHHhCCCeEEE
Q 011765 97 CLEEPMAKLLQSLAPDWLLFDF-A-AYWLPARARELGIPSGFF 137 (478)
Q Consensus 97 ~~~~~l~~ll~~~~pD~vI~D~-~-~~~~~~~A~~lgIP~i~~ 137 (478)
.+.+.+.+.++..++|+|+.=. - .+.|..+|..+|+|++..
T Consensus 49 ~~~~~l~~~~~~~~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~ 91 (187)
T PLN02293 49 DTIDLFVERYRDMGISVVAGIEARGFIFGPPIALAIGAKFVPL 91 (187)
T ss_pred HHHHHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHCCCEEEE
Confidence 4445555566666899998543 2 235778999999998865
No 436
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=32.41 E-value=1.2e+02 Score=25.21 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=29.0
Q ss_pred CCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEe
Q 011765 276 KGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLK 314 (478)
Q Consensus 276 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~ 314 (478)
...+|+|++||......+.+.++++.+. .+.+++++..
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~ 87 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNP 87 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEEC
Confidence 3459999999988877888899888874 3567766643
No 437
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=32.31 E-value=1e+02 Score=31.17 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=36.9
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccc
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNID 47 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 47 (478)
+-.|+++..++.|-..-...||..|.++|+.|.+++.+.++.
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 456788888899999999999999999999999999887654
No 438
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=32.21 E-value=1.5e+02 Score=24.15 Aligned_cols=79 Identities=15% Similarity=0.140 Sum_probs=38.9
Q ss_pred HHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHh-
Q 011765 297 EIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQF- 375 (478)
Q Consensus 297 ~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~- 375 (478)
.+.++....+-+++=++..... .....+... -...+.+.++-....+|-..+-..++.=||.||+-|....
T Consensus 3 a~~~ga~~~gG~viGi~p~~~~----~~~~~~~~~----~~~~~~~~~~~~Rk~~m~~~sda~I~lPGG~GTl~El~~~~ 74 (133)
T PF03641_consen 3 AVAKGAKEAGGRVIGIIPEFLF----PFEEPPNPY----VTELIIVDDMFERKEIMIESSDAFIALPGGIGTLDELFEAL 74 (133)
T ss_dssp HHHHHHHHTTTTEEEEEETTGT----TTTTTCCTT----SSEEEEESSHHHHHHHHHHHESEEEEES-SHHHHHHHHHHH
T ss_pred HHHHHHHHcCCeEEEEecCccc----cccccCCcc----cCceeEeCChHHHHHHHHHhCCEEEEEecCCchHHHHHHHH
Confidence 4556666677777766543211 101111100 1112333333333445443333357788899999988432
Q ss_pred ---------CCcEeccc
Q 011765 376 ---------GMPLIVLT 383 (478)
Q Consensus 376 ---------GvP~l~~P 383 (478)
.+|++.+-
T Consensus 75 ~~~~l~~~~~~Piil~~ 91 (133)
T PF03641_consen 75 TLMQLGRHNKVPIILLN 91 (133)
T ss_dssp HHHHTTSSTS-EEEEEE
T ss_pred HHHhhccccCCCEEEeC
Confidence 34888876
No 439
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.05 E-value=4e+02 Score=25.15 Aligned_cols=39 Identities=31% Similarity=0.342 Sum_probs=30.2
Q ss_pred cEEEeccCCh---hhhhcCCCceeeeeccChhhHHHHHHhCCcEe
Q 011765 339 GVVYTSWAPQ---LAILAHDSVGGFLTHAGWSSVVEALQFGMPLI 380 (478)
Q Consensus 339 n~~~~~~vpq---~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l 380 (478)
.+.+..|+|| +.+|--|++. +-. |--|+.-|..+|+|.+
T Consensus 239 rvvklPFvpqddyd~LL~lcD~n--~VR-GEDSFVRAq~agkPfl 280 (370)
T COG4394 239 RVVKLPFVPQDDYDELLWLCDFN--LVR-GEDSFVRAQLAGKPFL 280 (370)
T ss_pred EEEEecCCcHhHHHHHHHhcccc--eee-cchHHHHHHHcCCCcE
Confidence 4566789999 4588888873 333 6789999999999986
No 440
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=32.03 E-value=1.1e+02 Score=28.65 Aligned_cols=39 Identities=13% Similarity=0.159 Sum_probs=33.5
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCcc
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNI 46 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (478)
-|+|+..++.|-..-...||..|+++|+.|.+++.+.++
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r 112 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR 112 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence 456667778899999999999999999999999988653
No 441
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=31.99 E-value=54 Score=26.84 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=25.8
Q ss_pred cCHHHHHHHHHHHHhCCCeEEEEeCCCccccCC
Q 011765 18 GHMIPWLELAKLIAQKGHKIFFISTPRNIDRLP 50 (478)
Q Consensus 18 gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 50 (478)
..+--.+-++..|.++||+|++++++.....++
T Consensus 11 vq~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~ 43 (139)
T PF09001_consen 11 VQTPSALYLSYKLKKKGFEVVVAGNPAALKLLE 43 (139)
T ss_dssp THHHHHHHHHHHHHCTTEEEEEEE-HHHHHHHH
T ss_pred chhHHHHHHHHHHHhcCCeEEEecCHHHHhHhh
Confidence 444557788999999999999999998766554
No 442
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=31.92 E-value=1.2e+02 Score=27.42 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=22.0
Q ss_pred CCccEE-EEecCCCc-cCHHHHHHHHHHHHhCCCe
Q 011765 4 NSKLQI-AMFPWLAF-GHMIPWLELAKLIAQKGHK 36 (478)
Q Consensus 4 ~~~~~i-l~~~~~~~-gH~~p~l~La~~L~~rGh~ 36 (478)
++++|+ .+++-++. ||++=+.+|++.++++|.+
T Consensus 27 ~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~ 61 (223)
T PF06415_consen 27 GGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVK 61 (223)
T ss_dssp T--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-S
T ss_pred CCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCC
Confidence 457888 45566555 9999999999999999954
No 443
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=31.91 E-value=1.1e+02 Score=27.86 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=39.7
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCC-CeEEEEeCCCccccCCCCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKG-HKIFFISTPRNIDRLPRLP 53 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rG-h~Vt~~~~~~~~~~~~~~g 53 (478)
|||.+..=++.|-..-..-|+.+|.++| ++|..+-.+++...-...|
T Consensus 1 mkIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~nL~~~LG 48 (255)
T COG3640 1 MKIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNLPEALG 48 (255)
T ss_pred CeEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCCChHHhcC
Confidence 7899999999999988888788888886 9999999888766666655
No 444
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=31.59 E-value=1.6e+02 Score=19.50 Aligned_cols=36 Identities=3% Similarity=0.071 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHhcc
Q 011765 431 GQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLKNHR 466 (478)
Q Consensus 431 ~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 466 (478)
.++-.+.+.++.+++..+-++..|+..+.+.|+...
T Consensus 10 HeeQQ~AvE~Iq~LMaqGmSsgEAI~~VA~~iRe~~ 45 (51)
T PF03701_consen 10 HEEQQQAVERIQELMAQGMSSGEAIAIVAQEIREEH 45 (51)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 466788899999999999999999999988887443
No 445
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=31.57 E-value=55 Score=29.22 Aligned_cols=37 Identities=24% Similarity=0.227 Sum_probs=23.9
Q ss_pred HHHHHhhc--CCCEEEEcCCccc-------HHHHHHHhCCCeEEEe
Q 011765 102 MAKLLQSL--APDWLLFDFAAYW-------LPARARELGIPSGFFS 138 (478)
Q Consensus 102 l~~ll~~~--~pD~vI~D~~~~~-------~~~~A~~lgIP~i~~~ 138 (478)
+.+.+++. .||+|+.|.+... |..+.-.+++|.|.+.
T Consensus 83 l~~~~~~l~~~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGVA 128 (208)
T cd06559 83 LLEALEKLKTKPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGVA 128 (208)
T ss_pred HHHHHHhCCCCCCEEEEeCCccccCCCcchhheeeeecCCCEEEEE
Confidence 44555554 5999999975432 3344455678999873
No 446
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=31.57 E-value=3.3e+02 Score=23.28 Aligned_cols=86 Identities=13% Similarity=0.042 Sum_probs=48.4
Q ss_pred cEEEEcCcCccChHHHHHHHhhcCCCeeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHH
Q 011765 216 DIVAVRSCMEFEPEWLKLLEQLHRKPVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEEL 295 (478)
Q Consensus 216 ~~~l~ns~~~le~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~ 295 (478)
..+++-+.++.-......+...+| ++..+|-...... ....+++.+.+.....+ +|+|++|+- .++.+
T Consensus 50 ~ifllG~~~~~~~~~~~~l~~~yP-~l~ivg~~~g~f~-------~~~~~~i~~~I~~~~pd-iv~vglG~P---kQE~~ 117 (172)
T PF03808_consen 50 RIFLLGGSEEVLEKAAANLRRRYP-GLRIVGYHHGYFD-------EEEEEAIINRINASGPD-IVFVGLGAP---KQERW 117 (172)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHCC-CeEEEEecCCCCC-------hhhHHHHHHHHHHcCCC-EEEEECCCC---HHHHH
Confidence 445666655444445556777775 5777774433221 33466677777776544 999999862 23333
Q ss_pred HHHHHHHHhCCCCEEEEEec
Q 011765 296 TEIALGLELSKLPFFWVLKK 315 (478)
Q Consensus 296 ~~~~~al~~~~~~~i~~~~~ 315 (478)
.. +-..+++..++..+++
T Consensus 118 ~~--~~~~~l~~~v~i~vG~ 135 (172)
T PF03808_consen 118 IA--RHRQRLPAGVIIGVGG 135 (172)
T ss_pred HH--HHHHHCCCCEEEEECc
Confidence 22 2223566664444443
No 447
>CHL00067 rps2 ribosomal protein S2
Probab=31.49 E-value=49 Score=30.08 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=25.2
Q ss_pred CCCEEEE-cCCc-ccHHHHHHHhCCCeEEEecchHH
Q 011765 110 APDWLLF-DFAA-YWLPARARELGIPSGFFSIFTAA 143 (478)
Q Consensus 110 ~pD~vI~-D~~~-~~~~~~A~~lgIP~i~~~~~~~~ 143 (478)
.||+||. |+.. ..+..=|.++|||+|.+..+.+.
T Consensus 161 ~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~~ 196 (230)
T CHL00067 161 LPDIVIIIDQQEEYTALRECRKLGIPTISILDTNCD 196 (230)
T ss_pred CCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCCC
Confidence 6999875 4432 25777899999999999776554
No 448
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=31.41 E-value=40 Score=33.42 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=35.8
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPR 51 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~ 51 (478)
++||++.-.++.|= +-...+++.|.+.|++|.++.++...+++..
T Consensus 3 ~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~~ 47 (390)
T TIGR00521 3 NKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEAAKKFITP 47 (390)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHhHHHHHHH
Confidence 46888776665544 6689999999999999999999987776653
No 449
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=31.28 E-value=1.1e+02 Score=27.95 Aligned_cols=39 Identities=18% Similarity=0.034 Sum_probs=27.5
Q ss_pred hHHHHHHHhhcCCCEEEEcC--CcccHHHHHHHhCCCeEEE
Q 011765 99 EEPMAKLLQSLAPDWLLFDF--AAYWLPARARELGIPSGFF 137 (478)
Q Consensus 99 ~~~l~~ll~~~~pD~vI~D~--~~~~~~~~A~~lgIP~i~~ 137 (478)
...+.+.+...++|+|++=. -.+.|..+|..+|+|++..
T Consensus 100 ~~~la~~~~~~~~D~Vvtv~~~GI~lA~~lA~~L~~p~vi~ 140 (238)
T PRK08558 100 APVVAERFMGLRVDVVLTAATDGIPLAVAIASYFGADLVYA 140 (238)
T ss_pred HHHHHHHccCCCCCEEEEECcccHHHHHHHHHHHCcCEEEE
Confidence 33444445566899998543 3336778999999999975
No 450
>PRK09739 hypothetical protein; Provisional
Probab=31.21 E-value=1.1e+02 Score=26.90 Aligned_cols=36 Identities=8% Similarity=0.074 Sum_probs=22.8
Q ss_pred ccEEEEec-CCCc-cCHHH-HHHHHHHHHhCCCeEEEEe
Q 011765 6 KLQIAMFP-WLAF-GHMIP-WLELAKLIAQKGHKIFFIS 41 (478)
Q Consensus 6 ~~~il~~~-~~~~-gH~~p-~l~La~~L~~rGh~Vt~~~ 41 (478)
+|||+++. .|-. |.-.- .-.+++.|.++||+|+++-
T Consensus 3 mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~d 41 (199)
T PRK09739 3 SMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELD 41 (199)
T ss_pred CceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 68998874 3433 32222 4445677777899998764
No 451
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=31.20 E-value=61 Score=29.14 Aligned_cols=38 Identities=21% Similarity=0.174 Sum_probs=26.5
Q ss_pred HHHhhcCCCEEEEcCCc--ccHHHHHHHhCCCeEEEecch
Q 011765 104 KLLQSLAPDWLLFDFAA--YWLPARARELGIPSGFFSIFT 141 (478)
Q Consensus 104 ~ll~~~~pD~vI~D~~~--~~~~~~A~~lgIP~i~~~~~~ 141 (478)
+.+...+||+||..... .....-....+||++.+....
T Consensus 54 E~i~~l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 54 EAILALKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp HHHHHT--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred HHHHhCCCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 44557799999988766 345566778899999986643
No 452
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=31.11 E-value=1.1e+02 Score=22.36 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=28.6
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 011765 9 IAMFPWLAFGHMIPWLELAKLIAQKGHKIFFIS 41 (478)
Q Consensus 9 il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~ 41 (478)
+++...++.|-..-...||..|++.|++|.++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 456666788999999999999999999999887
No 453
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=31.11 E-value=77 Score=25.10 Aligned_cols=35 Identities=11% Similarity=-0.067 Sum_probs=30.9
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 9 IAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 9 il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
++..+.++..|-.....++..|.++|++|.++...
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~ 36 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVD 36 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCC
Confidence 57778888999999999999999999999988543
No 454
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=31.10 E-value=94 Score=27.42 Aligned_cols=39 Identities=26% Similarity=0.240 Sum_probs=33.0
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCcc
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNI 46 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (478)
-|+|+...+.|-..-...||..++.+|..|.+++.+.++
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 467777889999999999999999999999999988775
No 455
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=31.10 E-value=63 Score=31.02 Aligned_cols=34 Identities=26% Similarity=0.442 Sum_probs=29.0
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
+|+|.++-.+++| .+||+.|++.||+|++....+
T Consensus 1 ~~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~~ 34 (329)
T COG0240 1 MMKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRDE 34 (329)
T ss_pred CceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecCH
Confidence 4788888888887 589999999999999888653
No 456
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=31.08 E-value=1.4e+02 Score=25.58 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=31.0
Q ss_pred HhhhhHHHHHHHhhcCCCEEEEcCCccc-------------H--HHHHHHhCCCeEEEec
Q 011765 95 FDCLEEPMAKLLQSLAPDWLLFDFAAYW-------------L--PARARELGIPSGFFSI 139 (478)
Q Consensus 95 ~~~~~~~l~~ll~~~~pD~vI~D~~~~~-------------~--~~~A~~lgIP~i~~~~ 139 (478)
...+...+.+++++.+||.++.+..++. + ..++...|||+.-+.+
T Consensus 46 l~~I~~~l~~~i~~~~Pd~vaiE~~f~~~n~~sa~~l~~arGvi~la~~~~~ipv~ey~P 105 (164)
T PRK00039 46 LKQIYDGLSELIDEYQPDEVAIEEVFFNKNPQSALKLGQARGVAILAAAQRGLPVAEYTP 105 (164)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEehhhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECH
Confidence 4455568888899999999976642221 1 2357788999887744
No 457
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=31.06 E-value=44 Score=24.63 Aligned_cols=22 Identities=9% Similarity=0.235 Sum_probs=18.5
Q ss_pred HHHHHHHHHhCCCeEEEEeCCC
Q 011765 23 WLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 23 ~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
+..+.+.|.++||+|+=+....
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~~ 31 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENEQ 31 (80)
T ss_pred chHHHHHHHHCCCEEEecCCcc
Confidence 5678999999999999877555
No 458
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=30.97 E-value=3.4e+02 Score=25.38 Aligned_cols=40 Identities=20% Similarity=0.170 Sum_probs=34.9
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCcc
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNI 46 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (478)
-+++|+...+.|-..-+..|+..+..+|+.|.+++...++
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 5888898889999998999999999899999999887654
No 459
>PRK11914 diacylglycerol kinase; Reviewed
Probab=30.93 E-value=1.1e+02 Score=29.12 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=22.7
Q ss_pred eeeeeccChhhHHHHH----HhCCcEecccc
Q 011765 358 GGFLTHAGWSSVVEAL----QFGMPLIVLTC 384 (478)
Q Consensus 358 ~~~ItHgG~~s~~eal----~~GvP~l~~P~ 384 (478)
+++|.-||=||+.|++ ..++|+-++|.
T Consensus 66 d~vvv~GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 66 DALVVVGGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred CEEEEECCchHHHHHhHHhccCCCcEEEEeC
Confidence 3499999999999987 34789999995
No 460
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=30.92 E-value=1.3e+02 Score=26.35 Aligned_cols=39 Identities=15% Similarity=0.001 Sum_probs=27.4
Q ss_pred hHHHHHHHhhcCCCEEEEcCC--cccHHHHHHHhCCCeEEE
Q 011765 99 EEPMAKLLQSLAPDWLLFDFA--AYWLPARARELGIPSGFF 137 (478)
Q Consensus 99 ~~~l~~ll~~~~pD~vI~D~~--~~~~~~~A~~lgIP~i~~ 137 (478)
...+.+.++..++|.|+.=.. .+.|..+|..+|+|++.+
T Consensus 62 ~~~la~~~~~~~~d~I~g~~~~GiplA~~vA~~l~~p~v~v 102 (187)
T PRK13810 62 ARQAALRIKEMDVDTVAGVELGGVPLATAVSLETGLPLLIV 102 (187)
T ss_pred HHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEE
Confidence 334445555668999987543 234677899999999976
No 461
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=30.82 E-value=1e+02 Score=27.97 Aligned_cols=41 Identities=20% Similarity=0.198 Sum_probs=33.9
Q ss_pred EEEe-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccC
Q 011765 9 IAMF-PWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRL 49 (478)
Q Consensus 9 il~~-~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 49 (478)
|.|+ +=||-|-..-.+.||.+|+++|-.|+++-.++++...
T Consensus 4 Itf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~ 45 (231)
T PF07015_consen 4 ITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLA 45 (231)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHH
Confidence 3444 3457799999999999999999999999999887643
No 462
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=30.74 E-value=1.5e+02 Score=23.15 Aligned_cols=45 Identities=13% Similarity=0.031 Sum_probs=31.5
Q ss_pred cEEEEecC--CCccC-HHHHHHHHHHHHhCC---CeEEEEeCCCccccCCC
Q 011765 7 LQIAMFPW--LAFGH-MIPWLELAKLIAQKG---HKIFFISTPRNIDRLPR 51 (478)
Q Consensus 7 ~~il~~~~--~~~gH-~~p~l~La~~L~~rG---h~Vt~~~~~~~~~~~~~ 51 (478)
|+|+++.. |.... ..-.+.++..+...| |+|+++....-...+.+
T Consensus 1 k~v~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~gv~~~~~ 51 (122)
T PF02635_consen 1 KKVFFIVTSGPYDDERAKIALRLANAAAAMGDYGHDVVVFFHGDGVKLALK 51 (122)
T ss_dssp EEEEEEE-S-TTTBSHHHHHHHHHHHHHHTTHTTSEEEEEE-GGGGGGGBT
T ss_pred CEEEEEecCCCCCCHHHHHHHHHHHHHHHcCCCCCcEEEEEEchHHHHHHh
Confidence 46666544 33333 677888899999999 99999998887665543
No 463
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=30.64 E-value=78 Score=29.02 Aligned_cols=36 Identities=17% Similarity=0.151 Sum_probs=23.2
Q ss_pred HHHhhcCCCEEEEcCCccc--HH-HHHHHhCCCeEEEec
Q 011765 104 KLLQSLAPDWLLFDFAAYW--LP-ARARELGIPSGFFSI 139 (478)
Q Consensus 104 ~ll~~~~pD~vI~D~~~~~--~~-~~A~~lgIP~i~~~~ 139 (478)
+.+...+||+||....... .. .+.+.+|||++.+..
T Consensus 68 E~i~~l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~ 106 (262)
T cd01147 68 EKIAALKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDG 106 (262)
T ss_pred HHHHhcCCCEEEEecCCccchhHHHHHHhhCCCEEEEec
Confidence 3445779999998754332 12 233458999998754
No 464
>PF10835 DUF2573: Protein of unknown function (DUF2573); InterPro: IPR020393 This entry contains proteins with no known function.
Probab=30.56 E-value=1.8e+02 Score=21.23 Aligned_cols=53 Identities=13% Similarity=0.200 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHH------h--------cccCChHHHHHHHHHHHHhcccc
Q 011765 416 NSVAESLRLVLVEEKGQIYRDKAKEMKGL------F--------GDKGRHDRYVDNFLNYLKNHRCL 468 (478)
Q Consensus 416 ~~l~~~i~~ll~~~~~~~~~~~a~~~~~~------~--------~~~~~~~~~~~~i~~~~~~~~~~ 468 (478)
+.|.+.-.++|-|+.+++.++.++.|.-- + ...+.+...+..+++.|+.+++.
T Consensus 9 dgLveKytELL~Ge~~~e~~EkVk~W~lYshiaKsMPpL~kHWN~~~PeaK~~ik~li~~Ik~lNe~ 75 (82)
T PF10835_consen 9 DGLVEKYTELLLGETSPEMKEKVKQWALYSHIAKSMPPLAKHWNGTYPEAKEEIKELIEEIKQLNEA 75 (82)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhCcHHHHhhcccCchHHHHHHHHHHHHHHHHHH
Confidence 45667777888888899999998877532 1 14566667788888888877753
No 465
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=30.13 E-value=63 Score=29.24 Aligned_cols=35 Identities=17% Similarity=0.358 Sum_probs=25.6
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCcc
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNI 46 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (478)
|+++++..+-.| ..+|+.|.++||+|+.+-.....
T Consensus 1 m~iiIiG~G~vG-----~~va~~L~~~g~~Vv~Id~d~~~ 35 (225)
T COG0569 1 MKIIIIGAGRVG-----RSVARELSEEGHNVVLIDRDEER 35 (225)
T ss_pred CEEEEECCcHHH-----HHHHHHHHhCCCceEEEEcCHHH
Confidence 456666555433 67999999999999988766543
No 466
>PLN00016 RNA-binding protein; Provisional
Probab=30.03 E-value=64 Score=31.75 Aligned_cols=37 Identities=16% Similarity=0.252 Sum_probs=25.8
Q ss_pred ccEEEEecC--CCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 6 KLQIAMFPW--LAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 6 ~~~il~~~~--~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
+++|+++.. ++.|.+ -..|++.|.++||+|+.++...
T Consensus 52 ~~~VLVt~~~~GatG~i--G~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFI--GFYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred cceEEEEeccCCCceeE--hHHHHHHHHHCCCEEEEEecCC
Confidence 467887722 233333 3568899999999999988654
No 467
>PRK06270 homoserine dehydrogenase; Provisional
Probab=30.02 E-value=2.3e+02 Score=27.47 Aligned_cols=59 Identities=12% Similarity=0.049 Sum_probs=38.5
Q ss_pred ChhhhhcCCCceeeee------ccC---hhhHHHHHHhCCcEec---cccccchhhHHHHHhhcCeEEEee
Q 011765 347 PQLAILAHDSVGGFLT------HAG---WSSVVEALQFGMPLIV---LTCYADQGLNAKLLEEKQIVELIP 405 (478)
Q Consensus 347 pq~~vL~~~~~~~~It------HgG---~~s~~eal~~GvP~l~---~P~~~DQ~~na~~v~~~g~G~~l~ 405 (478)
+..++|..++++++|- |+| ..-+.+||.+|+++|+ -|....-..-.+..++.|+.....
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~e 150 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYE 150 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEe
Confidence 4566776655555664 443 4556899999999999 476443334455556667777654
No 468
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=29.95 E-value=81 Score=22.79 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCcc
Q 011765 21 IPWLELAKLIAQKGHKIFFISTPRNI 46 (478)
Q Consensus 21 ~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (478)
.--+.+|..|++.|.+||++...+..
T Consensus 9 ~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 9 FIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred HHHHHHHHHHHHhCcEEEEEeccchh
Confidence 34578999999999999998876653
No 469
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=29.84 E-value=39 Score=29.24 Aligned_cols=106 Identities=15% Similarity=0.176 Sum_probs=63.0
Q ss_pred CCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCC
Q 011765 276 KGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHD 355 (478)
Q Consensus 276 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~ 355 (478)
++.+..+.+|.++ ..+++.++.+|.+++..-... ...+ .... .++ .+.+-.++|+.+
T Consensus 36 g~tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~~--------~~~~-~~~~----~~~---~~~~l~ell~~a 92 (178)
T PF02826_consen 36 GKTVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRSP--------KPEE-GADE----FGV---EYVSLDELLAQA 92 (178)
T ss_dssp TSEEEEESTSHHH-------HHHHHHHHHTT-EEEEEESSC--------HHHH-HHHH----TTE---EESSHHHHHHH-
T ss_pred CCEEEEEEEcCCc-------CeEeeeeecCCceeEEecccC--------Chhh-hccc----ccc---eeeehhhhcchh
Confidence 4558888999887 456666677788765543221 1000 0000 012 456888999999
Q ss_pred CceeeeeccChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeE-EEeeccCCCCcccHHHHHHHHH
Q 011765 356 SVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIV-ELIPRDEGDGFFTRNSVAESLR 423 (478)
Q Consensus 356 ~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G-~~l~~~~~~~~~~~~~l~~~i~ 423 (478)
++ ++.|+-.+. ......|+..+..++=| +.+...+ .++++.+.|.++++
T Consensus 93 Di--v~~~~plt~----------------~T~~li~~~~l~~mk~ga~lvN~aR-G~~vde~aL~~aL~ 142 (178)
T PF02826_consen 93 DI--VSLHLPLTP----------------ETRGLINAEFLAKMKPGAVLVNVAR-GELVDEDALLDALE 142 (178)
T ss_dssp SE--EEE-SSSST----------------TTTTSBSHHHHHTSTTTEEEEESSS-GGGB-HHHHHHHHH
T ss_pred hh--hhhhhcccc----------------ccceeeeeeeeeccccceEEEeccc-hhhhhhhHHHHHHh
Confidence 98 888864321 23668888888888655 4445554 45677777777765
No 470
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=29.83 E-value=48 Score=30.45 Aligned_cols=51 Identities=12% Similarity=0.174 Sum_probs=34.5
Q ss_pred eeeeeccChhhHHHHHHh----CCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhc
Q 011765 358 GGFLTHAGWSSVVEALQF----GMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLV 427 (478)
Q Consensus 358 ~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~ 427 (478)
+++|+-||=||++.|++. ++|++++-... +|...+. .+.+++.+.+.++..
T Consensus 27 Dlvi~iGGDGTlL~a~~~~~~~~~PvlGIN~G~-------------lGFL~~~------~~~~e~~~~l~~~~~ 81 (246)
T PRK04761 27 DVIVALGGDGFMLQTLHRYMNSGKPVYGMNRGS-------------VGFLMNE------YSEDDLLERIAAAEP 81 (246)
T ss_pred CEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCC-------------CCcccCC------CCHHHHHHHHHHhhc
Confidence 449999999999988765 67888776531 3433321 245667777777665
No 471
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=29.76 E-value=1.2e+02 Score=27.67 Aligned_cols=41 Identities=10% Similarity=-0.066 Sum_probs=33.9
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCcccc
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDR 48 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 48 (478)
-+++...|+.|-..-.+.++.+-.++|..+.|++.+...+.
T Consensus 23 ~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~ 63 (237)
T TIGR03877 23 VVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQ 63 (237)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHH
Confidence 56778888999999999888776688999999998875543
No 472
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=29.73 E-value=3.1e+02 Score=28.76 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=21.8
Q ss_pred ceeeeeccCh------hhHHHHHHhCCcEeccc
Q 011765 357 VGGFLTHAGW------SSVVEALQFGMPLIVLT 383 (478)
Q Consensus 357 ~~~~ItHgG~------~s~~eal~~GvP~l~~P 383 (478)
.+++++|.|- +.+.+|...++|||++.
T Consensus 69 ~gv~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~ 101 (572)
T PRK06456 69 PGVCTATSGPGTTNLVTGLITAYWDSSPVIAIT 101 (572)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 3348888774 47899999999999995
No 473
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=29.65 E-value=72 Score=30.05 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=26.4
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
+||.|+-.+..| .++|+.|.++||+|+++.-..
T Consensus 1 ~kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~~ 33 (286)
T COG2084 1 MKIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRTP 33 (286)
T ss_pred CeEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCCh
Confidence 477777777665 578999999999999987553
No 474
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=29.54 E-value=4.7e+02 Score=26.05 Aligned_cols=140 Identities=14% Similarity=0.156 Sum_probs=73.1
Q ss_pred CceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCC-ChhhhhhcCCCcEEEecc-------CCh
Q 011765 277 GSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIEL-PDGFEERTRGRGVVYTSW-------APQ 348 (478)
Q Consensus 277 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~-p~~~~~~~~~~n~~~~~~-------vpq 348 (478)
+.+++.-.||+.. -....+++.|.+.+..+-.++..... .-+ |..+. ......++...| +.+
T Consensus 7 k~IllgvTGsiaa---~k~~~lv~~L~~~g~~V~vv~T~~A~------~fi~~~~l~-~l~~~~V~~~~~~~~~~~~~~h 76 (399)
T PRK05579 7 KRIVLGVSGGIAA---YKALELVRRLRKAGADVRVVMTEAAK------KFVTPLTFQ-ALSGNPVSTDLWDPAAEAAMGH 76 (399)
T ss_pred CeEEEEEeCHHHH---HHHHHHHHHHHhCCCEEEEEECHhHH------HHHhHHHHH-HhhCCceEccccccccCCCcch
Confidence 4466666666543 23445666666677776555543210 111 11111 111112332212 223
Q ss_pred hhhhcCCCceeeeeccChhhHHH-------------HHHhCCcEecccccc----c---hhhHHHHHhhcCeEEEeeccC
Q 011765 349 LAILAHDSVGGFLTHAGWSSVVE-------------ALQFGMPLIVLTCYA----D---QGLNAKLLEEKQIVELIPRDE 408 (478)
Q Consensus 349 ~~vL~~~~~~~~ItHgG~~s~~e-------------al~~GvP~l~~P~~~----D---Q~~na~~v~~~g~G~~l~~~~ 408 (478)
.++...+++ .+|.=|-+||+.. ++.+++|++++|... . -..|..++.+.|+-+.-+...
T Consensus 77 i~l~~~aD~-~vVaPaTaNtlaKiA~GiaDnllt~~~la~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~ii~P~~g 155 (399)
T PRK05579 77 IELAKWADL-VLIAPATADLIAKLAHGIADDLLTTTLLATTAPVLVAPAMNTQMWENPATQRNLATLRSRGVEIIGPASG 155 (399)
T ss_pred hhcccccCE-EEEeeCCHHHHHHHHcccCCcHHHHHHHhcCCCEEEEeCCChhHcCCHHHHHHHHHHHHCCCEEECCCCc
Confidence 344444554 3455555555443 366799999999543 2 245677777777665433110
Q ss_pred -------CC-CcccHHHHHHHHHHHhc
Q 011765 409 -------GD-GFFTRNSVAESLRLVLV 427 (478)
Q Consensus 409 -------~~-~~~~~~~l~~~i~~ll~ 427 (478)
+. ...+.++|...+.+.+.
T Consensus 156 ~la~~~~g~gr~~~~~~I~~~~~~~~~ 182 (399)
T PRK05579 156 RLACGDVGPGRMAEPEEIVAAAERALS 182 (399)
T ss_pred cccCCCcCCCCCCCHHHHHHHHHHHhh
Confidence 11 13578889888888876
No 475
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=29.53 E-value=91 Score=28.59 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=29.9
Q ss_pred cEE-EEe-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 7 LQI-AMF-PWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 7 ~~i-l~~-~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
|++ .+. +-++.|-..-+.+||..|++.|+.|..+--.
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~d 39 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLD 39 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 444 443 4567799999999999999999999988755
No 476
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=29.42 E-value=48 Score=31.52 Aligned_cols=36 Identities=25% Similarity=0.248 Sum_probs=28.8
Q ss_pred hhcCCCceeeeeccChhhHHHHHH----hCCcEecccccc
Q 011765 351 ILAHDSVGGFLTHAGWSSVVEALQ----FGMPLIVLTCYA 386 (478)
Q Consensus 351 vL~~~~~~~~ItHgG~~s~~eal~----~GvP~l~~P~~~ 386 (478)
.|..-.++.+|.=||.+|+.-|.. .++|+|++|-+.
T Consensus 86 ~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTI 125 (301)
T TIGR02482 86 NLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTI 125 (301)
T ss_pred HHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeecccc
Confidence 455567888999999999877753 799999999643
No 477
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=29.40 E-value=84 Score=20.14 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=17.6
Q ss_pred cHHHHHHHHHHHhcccchHHHHHHHHHH
Q 011765 414 TRNSVAESLRLVLVEEKGQIYRDKAKEM 441 (478)
Q Consensus 414 ~~~~l~~~i~~ll~~~~~~~~~~~a~~~ 441 (478)
++++|.+||..+.+++ -++++.|++.
T Consensus 1 tee~l~~Ai~~v~~g~--~S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK--MSIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTS--S-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence 5688999999999842 5666666543
No 478
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=29.37 E-value=3.5e+02 Score=25.89 Aligned_cols=103 Identities=16% Similarity=0.159 Sum_probs=55.0
Q ss_pred CceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEE-EeccCChhhhhcCC
Q 011765 277 GSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVV-YTSWAPQLAILAHD 355 (478)
Q Consensus 277 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~-~~~~vpq~~vL~~~ 355 (478)
+.+.+|.+|+++ ..+++-+...|.+++. +... ....+ ++. +.....-.++|+.+
T Consensus 137 ~tvgIvG~G~IG-------~~vA~~l~afG~~V~~-~~~~-------~~~~~----------~~~~~~~~~~l~e~l~~a 191 (312)
T PRK15469 137 FTIGILGAGVLG-------SKVAQSLQTWGFPLRC-WSRS-------RKSWP----------GVQSFAGREELSAFLSQT 191 (312)
T ss_pred CEEEEECCCHHH-------HHHHHHHHHCCCEEEE-EeCC-------CCCCC----------CceeecccccHHHHHhcC
Confidence 458889999888 4556666667887543 3221 01111 111 11223446788888
Q ss_pred CceeeeeccChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeE-EEeeccCCCCcccHHHHHHHHH
Q 011765 356 SVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIV-ELIPRDEGDGFFTRNSVAESLR 423 (478)
Q Consensus 356 ~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G-~~l~~~~~~~~~~~~~l~~~i~ 423 (478)
++ ++.|.-.+.-.+ ...|+..+..++=| +.+...+ .++++.+.|.++++
T Consensus 192 Dv--vv~~lPlt~~T~----------------~li~~~~l~~mk~ga~lIN~aR-G~vVde~aL~~aL~ 241 (312)
T PRK15469 192 RV--LINLLPNTPETV----------------GIINQQLLEQLPDGAYLLNLAR-GVHVVEDDLLAALD 241 (312)
T ss_pred CE--EEECCCCCHHHH----------------HHhHHHHHhcCCCCcEEEECCC-ccccCHHHHHHHHh
Confidence 88 888876543222 23345555555332 3334443 34456666665554
No 479
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=29.33 E-value=2.5e+02 Score=26.61 Aligned_cols=108 Identities=18% Similarity=0.081 Sum_probs=57.4
Q ss_pred eeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCC
Q 011765 242 VIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQAD 321 (478)
Q Consensus 242 ~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 321 (478)
-+++|.....+... ...-+|+.+.....+-+.+-+-........+...+..+.++++.+|.++++=++....
T Consensus 98 drf~~~~~v~p~~~-----~~a~~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~--- 169 (293)
T COG2159 98 DRFVGFARVDPRDP-----EAAAEELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPG--- 169 (293)
T ss_pred cceeeeeeeCCCch-----HHHHHHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCC---
Confidence 55666555444321 1123456666665443333332333333345566888999999999998884433211
Q ss_pred CCCCCCChhhhhhcCCCcEEEeccCC---hhhhhcCCCceeeeeccC--hhhHHHH
Q 011765 322 TEPIELPDGFEERTRGRGVVYTSWAP---QLAILAHDSVGGFLTHAG--WSSVVEA 372 (478)
Q Consensus 322 ~~~~~~p~~~~~~~~~~n~~~~~~vp---q~~vL~~~~~~~~ItHgG--~~s~~ea 372 (478)
...+.. . ...| ..-....+++..++.|+| ..=..|+
T Consensus 170 --~~~~~~---------~----~~~p~~~~~va~~fP~l~IVl~H~G~~~p~~~~a 210 (293)
T COG2159 170 --GAGLEK---------G----HSDPLYLDDVARKFPELKIVLGHMGEDYPWELEA 210 (293)
T ss_pred --Cccccc---------C----CCCchHHHHHHHHCCCCcEEEEecCCCCchhHHH
Confidence 001110 0 0112 223445789999999999 4444444
No 480
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=29.20 E-value=69 Score=22.57 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=18.0
Q ss_pred HHHHHHHHhCCCeEEEEeCCCc
Q 011765 24 LELAKLIAQKGHKIFFISTPRN 45 (478)
Q Consensus 24 l~La~~L~~rGh~Vt~~~~~~~ 45 (478)
+..|..|+++|++|+++-....
T Consensus 9 l~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESSSS
T ss_pred HHHHHHHHHCCCcEEEEecCcc
Confidence 5678999999999999875543
No 481
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=29.12 E-value=2.2e+02 Score=27.97 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=26.3
Q ss_pred eEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEec
Q 011765 279 VVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKK 315 (478)
Q Consensus 279 ~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 315 (478)
+++++.|+.+ .-.-+..++++|.+.|+++.+....
T Consensus 3 Il~~~~p~~G--Hv~P~l~la~~L~~rGh~V~~~t~~ 37 (401)
T cd03784 3 VLITTIGSRG--DVQPLVALAWALRAAGHEVRVATPP 37 (401)
T ss_pred EEEEeCCCcc--hHHHHHHHHHHHHHCCCeEEEeeCH
Confidence 7888888765 4555667888888888888877654
No 482
>PLN02735 carbamoyl-phosphate synthase
Probab=29.09 E-value=4e+02 Score=30.71 Aligned_cols=39 Identities=13% Similarity=0.190 Sum_probs=30.2
Q ss_pred ccEEEEecCCCc--cCH----HHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 6 KLQIAMFPWLAF--GHM----IPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 6 ~~~il~~~~~~~--gH~----~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
..|||++..+.. |+. +-...++++|++.|++|+.+.+..
T Consensus 23 ~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~np 67 (1102)
T PLN02735 23 LKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNP 67 (1102)
T ss_pred CCEEEEECCCccccccceeecchHHHHHHHHHHcCCEEEEEeCCc
Confidence 368999877653 533 557889999999999999887655
No 483
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=29.06 E-value=1.1e+02 Score=26.58 Aligned_cols=45 Identities=18% Similarity=0.252 Sum_probs=34.6
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLP 50 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 50 (478)
+..++|...++.|-..=..++|+++.++|+.|.|+..+...+.+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK 91 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence 457889988888888889999999999999999998777655443
No 484
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=29.01 E-value=2.7e+02 Score=26.66 Aligned_cols=101 Identities=10% Similarity=0.050 Sum_probs=61.3
Q ss_pred CCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCC
Q 011765 276 KGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHD 355 (478)
Q Consensus 276 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~ 355 (478)
++.+..|.+|.++ ..+++-++.+|.+++. +.... . +. ... ..+++-.++|+.+
T Consensus 145 gktvGIiG~G~IG-------~~vA~~~~~fgm~V~~-~d~~~------~---~~-------~~~---~~~~~l~ell~~s 197 (311)
T PRK08410 145 GKKWGIIGLGTIG-------KRVAKIAQAFGAKVVY-YSTSG------K---NK-------NEE---YERVSLEELLKTS 197 (311)
T ss_pred CCEEEEECCCHHH-------HHHHHHHhhcCCEEEE-ECCCc------c---cc-------ccC---ceeecHHHHhhcC
Confidence 4568999999887 3444445556777553 32210 0 00 001 1355788999999
Q ss_pred CceeeeeccChhhHHHHHHhCCcEecccccc--chhhHHHHHhhcCeEEEe-eccCCCCcccHHHHHHHHHH
Q 011765 356 SVGGFLTHAGWSSVVEALQFGMPLIVLTCYA--DQGLNAKLLEEKQIVELI-PRDEGDGFFTRNSVAESLRL 424 (478)
Q Consensus 356 ~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~g~G~~l-~~~~~~~~~~~~~l~~~i~~ 424 (478)
++ ++-|+ |... ....|+..+..++=|..+ ...+ .++++.+.|.++++.
T Consensus 198 Dv--v~lh~------------------Plt~~T~~li~~~~~~~Mk~~a~lIN~aR-G~vVDe~AL~~AL~~ 248 (311)
T PRK08410 198 DI--ISIHA------------------PLNEKTKNLIAYKELKLLKDGAILINVGR-GGIVNEKDLAKALDE 248 (311)
T ss_pred CE--EEEeC------------------CCCchhhcccCHHHHHhCCCCeEEEECCC-ccccCHHHHHHHHHc
Confidence 98 88876 4333 346777777777655554 4443 456777777777763
No 485
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=28.95 E-value=50 Score=28.15 Aligned_cols=26 Identities=42% Similarity=0.584 Sum_probs=21.4
Q ss_pred eeeeeccChh------hHHHHHHhCCcEeccc
Q 011765 358 GGFLTHAGWS------SVVEALQFGMPLIVLT 383 (478)
Q Consensus 358 ~~~ItHgG~~------s~~eal~~GvP~l~~P 383 (478)
+++++|+|-| .+.||...++|||++.
T Consensus 62 gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 62 VAVVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred EEEEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 3388888754 7789999999999995
No 486
>PRK06932 glycerate dehydrogenase; Provisional
Probab=28.86 E-value=2.3e+02 Score=27.18 Aligned_cols=101 Identities=10% Similarity=0.144 Sum_probs=59.8
Q ss_pred CCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCC
Q 011765 276 KGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHD 355 (478)
Q Consensus 276 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~ 355 (478)
++.+..|.+|.++ ..+++.++.+|.+++. +... . .. .. ...+.+..++|+.+
T Consensus 147 gktvgIiG~G~IG-------~~va~~l~~fg~~V~~-~~~~--------~--~~---------~~-~~~~~~l~ell~~s 198 (314)
T PRK06932 147 GSTLGVFGKGCLG-------TEVGRLAQALGMKVLY-AEHK--------G--AS---------VC-REGYTPFEEVLKQA 198 (314)
T ss_pred CCEEEEECCCHHH-------HHHHHHHhcCCCEEEE-ECCC--------c--cc---------cc-ccccCCHHHHHHhC
Confidence 3558899999887 3455556667877654 2211 0 00 00 11356778999999
Q ss_pred CceeeeeccChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEe-eccCCCCcccHHHHHHHHH
Q 011765 356 SVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELI-PRDEGDGFFTRNSVAESLR 423 (478)
Q Consensus 356 ~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l-~~~~~~~~~~~~~l~~~i~ 423 (478)
++ ++.|+-.+. ......|+..+..++=|..+ ..++ .++++.+.|.++++
T Consensus 199 Di--v~l~~Plt~----------------~T~~li~~~~l~~mk~ga~lIN~aR-G~~Vde~AL~~aL~ 248 (314)
T PRK06932 199 DI--VTLHCPLTE----------------TTQNLINAETLALMKPTAFLINTGR-GPLVDEQALLDALE 248 (314)
T ss_pred CE--EEEcCCCCh----------------HHhcccCHHHHHhCCCCeEEEECCC-ccccCHHHHHHHHH
Confidence 98 888875432 12345667777777544433 4443 44566666666665
No 487
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=28.83 E-value=94 Score=26.88 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=0.0
Q ss_pred HHHHhhcCCCEEEEcCCccc-HHHHHHHhCCCeEEE
Q 011765 103 AKLLQSLAPDWLLFDFAAYW-LPARARELGIPSGFF 137 (478)
Q Consensus 103 ~~ll~~~~pD~vI~D~~~~~-~~~~A~~lgIP~i~~ 137 (478)
.+.+.+.+||+||....... ...--+..|+|++.+
T Consensus 53 ~E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~ 88 (195)
T cd01143 53 VEKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVL 88 (195)
T ss_pred HHHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEe
No 488
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=28.73 E-value=74 Score=28.29 Aligned_cols=34 Identities=24% Similarity=0.188 Sum_probs=25.4
Q ss_pred cCCCEEE-EcCCcc-cHHHHHHHhCCCeEEEecchH
Q 011765 109 LAPDWLL-FDFAAY-WLPARARELGIPSGFFSIFTA 142 (478)
Q Consensus 109 ~~pD~vI-~D~~~~-~~~~~A~~lgIP~i~~~~~~~ 142 (478)
..||+|| .|+..- -|+.=|.++|||+|.+..+.+
T Consensus 113 ~~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn~ 148 (204)
T PRK04020 113 IEPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTDN 148 (204)
T ss_pred CCCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCCC
Confidence 3899986 454332 577789999999999977554
No 489
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=28.69 E-value=73 Score=25.25 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=38.0
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCcc
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNI 46 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (478)
.++.|-+.|..+++.+.|+-.+.+.|.....++.++++.+..
T Consensus 45 g~Lql~i~pasGrrkLspt~emi~~l~~geIel~VLttqpDI 86 (144)
T PF10657_consen 45 GKLQLTISPASGRRKLSPTPEMIDKLISGEIELFVLTTQPDI 86 (144)
T ss_pred CceEEEEecCCCccccCCcHHHHHHHhcCceEEEEEccCCCe
Confidence 378999999999999999999999999998999999987654
No 490
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=28.64 E-value=80 Score=32.13 Aligned_cols=39 Identities=15% Similarity=0.014 Sum_probs=29.9
Q ss_pred CCCCCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 1 MADNSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 1 ~~~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
|...+.+||+++..+..| +..+|+.|.++|++|+..-..
T Consensus 2 ~~~~~~~~v~viG~G~sG----~s~~a~~L~~~G~~V~~~D~~ 40 (461)
T PRK00421 2 PELRRIKRIHFVGIGGIG----MSGLAEVLLNLGYKVSGSDLK 40 (461)
T ss_pred CCcCCCCEEEEEEEchhh----HHHHHHHHHhCCCeEEEECCC
Confidence 334445789999999877 445899999999999886543
No 491
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=28.44 E-value=2.2e+02 Score=28.68 Aligned_cols=26 Identities=38% Similarity=0.505 Sum_probs=21.4
Q ss_pred ceeeeeccCh------hhHHHHHHhCCcEecc
Q 011765 357 VGGFLTHAGW------SSVVEALQFGMPLIVL 382 (478)
Q Consensus 357 ~~~~ItHgG~------~s~~eal~~GvP~l~~ 382 (478)
.+++++|.|- +.+.+|.+.++|||++
T Consensus 64 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i 95 (432)
T TIGR00173 64 PVAVVCTSGTAVANLLPAVIEASYSGVPLIVL 95 (432)
T ss_pred CEEEEECCcchHhhhhHHHHHhcccCCcEEEE
Confidence 3448888874 4788999999999999
No 492
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=28.37 E-value=1.3e+02 Score=28.17 Aligned_cols=39 Identities=15% Similarity=0.037 Sum_probs=27.7
Q ss_pred HHHHHHHhhcCCCEEEEcC--CcccHHHHHHHhCCCeEEEe
Q 011765 100 EPMAKLLQSLAPDWLLFDF--AAYWLPARARELGIPSGFFS 138 (478)
Q Consensus 100 ~~l~~ll~~~~pD~vI~D~--~~~~~~~~A~~lgIP~i~~~ 138 (478)
..+.+.+...++|+|++=. -.+.|..+|..+|+|++..-
T Consensus 118 ~~la~~~~~~~iD~VvgvetkGIpLA~avA~~L~vp~vivR 158 (268)
T TIGR01743 118 KILASVFAEREIDAVMTVATKGIPLAYAVASVLNVPLVIVR 158 (268)
T ss_pred HHHHHHhcCCCCCEEEEEccchHHHHHHHHHHHCCCEEEEE
Confidence 3444455566899998653 23357789999999999873
No 493
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=28.37 E-value=1.5e+02 Score=23.87 Aligned_cols=39 Identities=10% Similarity=0.194 Sum_probs=26.7
Q ss_pred cEEEE-ecCCCccCHHH--HHHHHHHHHhCC-CeEEEEeCCCc
Q 011765 7 LQIAM-FPWLAFGHMIP--WLELAKLIAQKG-HKIFFISTPRN 45 (478)
Q Consensus 7 ~~il~-~~~~~~gH~~p--~l~La~~L~~rG-h~Vt~~~~~~~ 45 (478)
||+.| ++-|-+|+-+- .+.+|++|.+.| ++|.++-..+-
T Consensus 1 m~~~Ivvt~ppYg~q~a~~A~~fA~all~~gh~~v~iFly~Dg 43 (126)
T COG1553 1 MKYTIVVTGPPYGTESAFSALRFAEALLEQGHELVRLFLYQDG 43 (126)
T ss_pred CeEEEEEecCCCccHHHHHHHHHHHHHHHcCCeEEEEEEeecc
Confidence 45644 57777786555 567799999996 66776654443
No 494
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=28.33 E-value=1.3e+02 Score=25.72 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=20.7
Q ss_pred eeeeeccCh------hhHHHHHHhCCcEecccc
Q 011765 358 GGFLTHAGW------SSVVEALQFGMPLIVLTC 384 (478)
Q Consensus 358 ~~~ItHgG~------~s~~eal~~GvP~l~~P~ 384 (478)
.++++|.|- +++.+|...++|+|++.-
T Consensus 66 ~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 66 GVVIVTSGPGATNALTGLANAYADRIPVLVITG 98 (172)
T ss_dssp EEEEEETTHHHHTTHHHHHHHHHTT-EEEEEEE
T ss_pred eEEEeecccchHHHHHHHhhcccceeeEEEEec
Confidence 338888774 578899999999999874
No 495
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=28.30 E-value=2.3e+02 Score=27.32 Aligned_cols=106 Identities=12% Similarity=0.198 Sum_probs=64.9
Q ss_pred CceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCC
Q 011765 277 GSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDS 356 (478)
Q Consensus 277 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~ 356 (478)
+.+-.+.+|.++ ..+++-++..+.+++.--.. ..|+. ++ ..-..|++..++|+.++
T Consensus 147 ktvGIiG~GrIG-------~avA~r~~~Fgm~v~y~~~~----------~~~~~-~~------~~~~~y~~l~ell~~sD 202 (324)
T COG1052 147 KTLGIIGLGRIG-------QAVARRLKGFGMKVLYYDRS----------PNPEA-EK------ELGARYVDLDELLAESD 202 (324)
T ss_pred CEEEEECCCHHH-------HHHHHHHhcCCCEEEEECCC----------CChHH-Hh------hcCceeccHHHHHHhCC
Confidence 457778888877 23444444456665543221 11211 10 01136778999999999
Q ss_pred ceeeeeccChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHH
Q 011765 357 VGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRL 424 (478)
Q Consensus 357 ~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ 424 (478)
+ ++-||..+-= .....|+..++.++=|..+---.+.++++.+.|.++|++
T Consensus 203 i--i~l~~Plt~~----------------T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~ 252 (324)
T COG1052 203 I--ISLHCPLTPE----------------TRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKS 252 (324)
T ss_pred E--EEEeCCCChH----------------HhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHh
Confidence 9 8888855311 344678889999977666643332556788888888764
No 496
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=28.18 E-value=72 Score=32.66 Aligned_cols=34 Identities=21% Similarity=0.106 Sum_probs=26.8
Q ss_pred HHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEE
Q 011765 101 PMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFF 137 (478)
Q Consensus 101 ~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~ 137 (478)
.+.+++++.+||++|.. .....+|+++|||++-.
T Consensus 384 e~~~~i~~~~pDliig~---s~~~~~a~k~giP~~~~ 417 (475)
T PRK14478 384 ELYKMLKEAKADIMLSG---GRSQFIALKAGMPWLDI 417 (475)
T ss_pred HHHHHHhhcCCCEEEec---CchhhhhhhcCCCEEEc
Confidence 45566777899999997 45678899999999843
No 497
>PRK10490 sensor protein KdpD; Provisional
Probab=28.15 E-value=73 Score=35.60 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=34.4
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
++||.+=..|+.|-.+.|+.-|++|+++|++|++-.-+
T Consensus 24 ~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~~e 61 (895)
T PRK10490 24 KLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGVVE 61 (895)
T ss_pred cEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEEee
Confidence 68999999999999999999999999999999865544
No 498
>PRK09213 pur operon repressor; Provisional
Probab=28.10 E-value=1.4e+02 Score=27.86 Aligned_cols=38 Identities=16% Similarity=-0.024 Sum_probs=27.1
Q ss_pred HHHHHHhhcCCCEEEEcC--CcccHHHHHHHhCCCeEEEe
Q 011765 101 PMAKLLQSLAPDWLLFDF--AAYWLPARARELGIPSGFFS 138 (478)
Q Consensus 101 ~l~~ll~~~~pD~vI~D~--~~~~~~~~A~~lgIP~i~~~ 138 (478)
.+.+.+...++|+|++=. -.+.|..+|..+|+|++..-
T Consensus 121 ~la~~~~~~~iD~Vvtvet~GIplA~~vA~~L~vp~vivR 160 (271)
T PRK09213 121 IIASAFADKKIDAVMTVETKGIPLAYAVANYLNVPFVIVR 160 (271)
T ss_pred HHHHHhcccCCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 344445566899998643 23357789999999999873
No 499
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=28.05 E-value=4.5e+02 Score=25.44 Aligned_cols=105 Identities=15% Similarity=0.213 Sum_probs=62.9
Q ss_pred CCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCC
Q 011765 276 KGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHD 355 (478)
Q Consensus 276 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~ 355 (478)
.+.+..+.+|+++ ..+++-|..++..+....+ .+.+.....+. -..++...+.+..+
T Consensus 162 gK~vgilG~G~IG-------~~ia~rL~~Fg~~i~y~~r----------~~~~~~~~~~~------~~~~~d~~~~~~~s 218 (336)
T KOG0069|consen 162 GKTVGILGLGRIG-------KAIAKRLKPFGCVILYHSR----------TQLPPEEAYEY------YAEFVDIEELLANS 218 (336)
T ss_pred CCEEEEecCcHHH-------HHHHHhhhhccceeeeecc----------cCCchhhHHHh------cccccCHHHHHhhC
Confidence 4558899999988 3555555556632222221 12222111111 11266888889888
Q ss_pred CceeeeeccChhhHHHHHHhCCcEecccccc--chhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHH
Q 011765 356 SVGGFLTHAGWSSVVEALQFGMPLIVLTCYA--DQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLR 423 (478)
Q Consensus 356 ~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~ 423 (478)
++ +|-|| |... .--.|...++.++-|..+---.+-++++.+.+.++++
T Consensus 219 D~--ivv~~------------------pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~ 268 (336)
T KOG0069|consen 219 DV--IVVNC------------------PLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALK 268 (336)
T ss_pred CE--EEEec------------------CCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHh
Confidence 88 77666 4333 3467888888887777764433255678888887775
No 500
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=27.95 E-value=93 Score=27.16 Aligned_cols=34 Identities=29% Similarity=0.498 Sum_probs=22.4
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRN 45 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~ 45 (478)
|||.++. .||+ -+.+|-.|++.||+|+-+-....
T Consensus 1 M~I~ViG---lGyv--Gl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIG---LGYV--GLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE-----STT--HHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEEC---CCcc--hHHHHHHHHhCCCEEEEEeCChH
Confidence 6777773 3443 37789999999999998776543
Done!