Query 011765
Match_columns 478
No_of_seqs 120 out of 1280
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 14:52:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011765.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011765hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hbf_A Flavonoid 3-O-glucosylt 100.0 6.1E-65 2.1E-69 506.4 35.3 437 1-463 8-453 (454)
2 2vch_A Hydroquinone glucosyltr 100.0 9.4E-60 3.2E-64 477.0 41.1 444 1-464 1-469 (480)
3 2pq6_A UDP-glucuronosyl/UDP-gl 100.0 1E-59 3.5E-64 478.4 35.4 448 1-464 1-479 (482)
4 2c1x_A UDP-glucose flavonoid 3 100.0 4.3E-57 1.5E-61 454.7 36.9 439 1-464 1-452 (456)
5 2acv_A Triterpene UDP-glucosyl 100.0 4.3E-56 1.5E-60 448.5 31.8 432 5-463 8-462 (463)
6 2iya_A OLEI, oleandomycin glyc 100.0 8.5E-48 2.9E-52 386.1 30.9 403 6-463 12-421 (424)
7 4amg_A Snogd; transferase, pol 100.0 9.8E-47 3.4E-51 375.4 25.5 364 5-461 21-398 (400)
8 1iir_A Glycosyltransferase GTF 100.0 1.2E-45 4.2E-50 369.1 28.5 385 7-464 1-401 (415)
9 1rrv_A Glycosyltransferase GTF 100.0 8.9E-45 3E-49 363.1 26.0 383 7-464 1-402 (416)
10 3rsc_A CALG2; TDP, enediyne, s 100.0 3.7E-43 1.2E-47 351.4 28.7 390 5-464 19-414 (415)
11 3h4t_A Glycosyltransferase GTF 100.0 3.7E-43 1.3E-47 349.6 27.0 381 7-466 1-385 (404)
12 3ia7_A CALG4; glycosysltransfe 100.0 3.7E-42 1.3E-46 342.5 30.2 392 6-464 4-399 (402)
13 2iyf_A OLED, oleandomycin glyc 100.0 4E-41 1.4E-45 338.2 26.8 393 1-464 1-400 (430)
14 2yjn_A ERYCIII, glycosyltransf 100.0 6E-41 2E-45 337.9 26.9 389 5-464 19-436 (441)
15 2p6p_A Glycosyl transferase; X 100.0 8.8E-41 3E-45 330.7 24.3 367 7-466 1-382 (384)
16 4fzr_A SSFS6; structural genom 100.0 6.1E-39 2.1E-43 319.0 21.3 366 4-459 13-396 (398)
17 3oti_A CALG3; calicheamicin, T 100.0 1.1E-37 3.7E-42 310.0 24.5 359 5-462 19-396 (398)
18 3tsa_A SPNG, NDP-rhamnosyltran 100.0 5.5E-37 1.9E-41 304.1 24.2 366 6-463 1-388 (391)
19 3otg_A CALG1; calicheamicin, T 100.0 2.1E-34 7.1E-39 287.6 31.3 376 4-463 18-408 (412)
20 3s2u_A UDP-N-acetylglucosamine 100.0 4.9E-30 1.7E-34 251.0 26.5 339 7-463 3-356 (365)
21 2o6l_A UDP-glucuronosyltransfe 100.0 6.4E-28 2.2E-32 209.9 17.8 165 261-447 5-170 (170)
22 1f0k_A MURG, UDP-N-acetylgluco 99.9 8.3E-22 2.8E-26 192.8 26.2 342 6-468 6-360 (364)
23 3hbm_A UDP-sugar hydrolase; PS 99.7 3.5E-16 1.2E-20 145.4 21.8 264 7-407 1-275 (282)
24 2jzc_A UDP-N-acetylglucosamine 99.6 9.4E-16 3.2E-20 136.6 10.0 139 272-425 23-196 (224)
25 3c48_A Predicted glycosyltrans 99.6 3.1E-12 1E-16 127.9 29.4 377 4-466 18-426 (438)
26 2gek_A Phosphatidylinositol ma 99.6 8.9E-12 3E-16 123.1 32.0 351 3-469 17-387 (406)
27 1v4v_A UDP-N-acetylglucosamine 99.5 1.8E-13 6.1E-18 134.1 19.1 108 338-462 255-365 (376)
28 3okp_A GDP-mannose-dependent a 99.5 6.6E-12 2.2E-16 123.5 27.0 349 5-469 3-383 (394)
29 2jjm_A Glycosyl transferase, g 99.5 1.4E-11 4.7E-16 121.4 27.8 356 6-470 15-390 (394)
30 3fro_A GLGA glycogen synthase; 99.5 3.9E-11 1.3E-15 119.7 30.5 385 5-468 1-433 (439)
31 3dzc_A UDP-N-acetylglucosamine 99.5 2E-13 7E-18 134.4 13.2 345 2-462 21-394 (396)
32 2r60_A Glycosyl transferase, g 99.4 2.9E-11 1E-15 123.0 26.8 115 337-466 334-460 (499)
33 1vgv_A UDP-N-acetylglucosamine 99.4 3E-12 1E-16 125.6 17.1 161 276-462 204-373 (384)
34 3ot5_A UDP-N-acetylglucosamine 99.4 1.3E-12 4.4E-17 128.9 12.1 110 337-463 281-393 (403)
35 2iw1_A Lipopolysaccharide core 99.4 3.6E-10 1.2E-14 110.1 27.6 161 277-463 195-369 (374)
36 3beo_A UDP-N-acetylglucosamine 99.3 3.7E-11 1.3E-15 117.4 17.3 163 276-462 204-373 (375)
37 2iuy_A Avigt4, glycosyltransfe 99.2 1.5E-10 5.2E-15 111.5 17.1 150 280-466 164-336 (342)
38 4hwg_A UDP-N-acetylglucosamine 99.2 3.2E-10 1.1E-14 110.8 14.9 347 6-463 9-375 (385)
39 2x6q_A Trehalose-synthase TRET 99.2 3.9E-09 1.3E-13 104.5 22.9 112 337-465 292-414 (416)
40 1rzu_A Glycogen synthase 1; gl 99.1 5.5E-09 1.9E-13 105.7 23.6 168 279-471 292-481 (485)
41 2qzs_A Glycogen synthase; glyc 99.1 3E-08 1E-12 100.2 26.6 168 278-470 292-481 (485)
42 3oy2_A Glycosyltransferase B73 99.1 2.7E-08 9.2E-13 98.3 24.5 114 340-469 256-394 (413)
43 3s28_A Sucrose synthase 1; gly 99.0 1.1E-07 3.7E-12 100.8 25.7 113 337-464 639-768 (816)
44 2vsy_A XCC0866; transferase, g 98.7 3.6E-06 1.2E-10 86.7 26.6 117 338-466 434-560 (568)
45 2hy7_A Glucuronosyltransferase 98.7 9.2E-07 3.1E-11 87.2 20.9 72 338-427 265-351 (406)
46 2f9f_A First mannosyl transfer 98.6 2.8E-07 9.6E-12 79.5 11.4 141 279-443 24-175 (177)
47 2xci_A KDO-transferase, 3-deox 98.5 5.8E-06 2E-10 80.4 19.1 95 339-443 261-361 (374)
48 2x0d_A WSAF; GT4 family, trans 98.4 8.7E-06 3E-10 80.2 16.8 84 338-437 295-385 (413)
49 3vue_A GBSS-I, granule-bound s 98.3 0.00058 2E-08 69.4 27.3 172 278-466 327-512 (536)
50 3q3e_A HMW1C-like glycosyltran 98.1 0.00071 2.4E-08 68.6 23.6 147 278-440 441-597 (631)
51 3tov_A Glycosyl transferase fa 97.7 0.0026 8.9E-08 60.8 18.4 105 5-136 7-115 (349)
52 3qhp_A Type 1 capsular polysac 97.6 0.00024 8.1E-09 59.9 9.8 136 278-440 2-149 (166)
53 4gyw_A UDP-N-acetylglucosamine 97.6 0.00045 1.6E-08 72.8 13.0 184 275-474 520-718 (723)
54 2bfw_A GLGA glycogen synthase; 97.5 0.0019 6.4E-08 56.1 13.4 76 339-427 96-179 (200)
55 1psw_A ADP-heptose LPS heptosy 97.4 0.0022 7.5E-08 61.2 14.6 104 7-137 1-107 (348)
56 3rhz_A GTF3, nucleotide sugar 97.3 0.00057 2E-08 65.0 7.9 108 339-459 215-334 (339)
57 2gt1_A Lipopolysaccharide hept 96.6 0.02 6.8E-07 54.0 12.6 45 7-51 1-47 (326)
58 3ty2_A 5'-nucleotidase SURE; s 93.5 0.13 4.3E-06 46.1 6.2 117 1-139 6-135 (261)
59 2phj_A 5'-nucleotidase SURE; S 93.3 0.67 2.3E-05 41.3 10.6 114 6-139 1-127 (251)
60 3t5t_A Putative glycosyltransf 91.2 13 0.00043 36.8 22.0 111 339-465 353-473 (496)
61 2wqk_A 5'-nucleotidase SURE; S 90.7 1.8 6.1E-05 38.7 10.3 114 6-139 1-127 (251)
62 2iz6_A Molybdenum cofactor car 89.8 5.7 0.00019 33.2 12.1 134 265-427 35-173 (176)
63 1kjn_A MTH0777; hypotethical p 89.3 0.54 1.8E-05 37.6 5.0 50 1-50 1-52 (157)
64 4b4k_A N5-carboxyaminoimidazol 87.8 4.1 0.00014 33.8 9.5 140 277-446 22-171 (181)
65 1l5x_A SurviVal protein E; str 87.3 6.2 0.00021 35.7 11.4 113 7-139 1-127 (280)
66 3nb0_A Glycogen [starch] synth 87.2 3.7 0.00013 42.2 10.9 34 350-385 514-551 (725)
67 1xmp_A PURE, phosphoribosylami 86.7 6.4 0.00022 32.4 10.0 142 277-447 11-161 (170)
68 1uqt_A Alpha, alpha-trehalose- 86.7 3.7 0.00013 40.6 10.6 107 340-465 333-454 (482)
69 4grd_A N5-CAIR mutase, phospho 86.5 2.9 0.0001 34.4 8.0 142 276-446 11-161 (173)
70 1j9j_A Stationary phase surviV 86.5 4.4 0.00015 36.0 9.8 114 7-139 1-128 (247)
71 3rg8_A Phosphoribosylaminoimid 85.2 7.3 0.00025 31.7 9.7 136 278-446 3-147 (159)
72 3oow_A Phosphoribosylaminoimid 85.2 11 0.00037 30.9 10.7 141 278-446 6-154 (166)
73 1g5t_A COB(I)alamin adenosyltr 84.6 7.5 0.00026 33.1 10.1 97 6-120 28-130 (196)
74 2e6c_A 5'-nucleotidase SURE; S 84.1 11 0.00038 33.3 11.3 115 7-139 1-129 (244)
75 1o4v_A Phosphoribosylaminoimid 83.8 7.5 0.00026 32.3 9.3 139 277-447 13-161 (183)
76 3rfo_A Methionyl-tRNA formyltr 83.6 3.3 0.00011 38.4 8.0 38 3-45 1-38 (317)
77 3ors_A N5-carboxyaminoimidazol 83.4 6.2 0.00021 32.2 8.5 139 278-446 4-152 (163)
78 3kuu_A Phosphoribosylaminoimid 82.3 10 0.00035 31.3 9.4 140 278-446 13-161 (174)
79 3lp6_A Phosphoribosylaminoimid 82.1 6.7 0.00023 32.4 8.3 139 277-447 7-155 (174)
80 1fmt_A Methionyl-tRNA FMet for 81.7 3.1 0.00011 38.5 7.1 36 4-44 1-36 (314)
81 2v4n_A Multifunctional protein 81.5 5.5 0.00019 35.4 8.3 112 6-139 1-126 (254)
82 1mvl_A PPC decarboxylase athal 81.2 2 7E-05 37.1 5.2 45 6-52 19-63 (209)
83 3auf_A Glycinamide ribonucleot 79.7 11 0.00037 33.0 9.5 104 5-139 21-131 (229)
84 3trh_A Phosphoribosylaminoimid 79.6 13 0.00044 30.5 9.1 142 277-447 6-156 (169)
85 1u11_A PURE (N5-carboxyaminoim 79.4 10 0.00036 31.5 8.6 140 277-446 21-170 (182)
86 2bw0_A 10-FTHFDH, 10-formyltet 77.4 4.4 0.00015 37.8 6.7 32 6-42 22-53 (329)
87 3iqw_A Tail-anchored protein t 76.9 3.4 0.00012 38.6 5.8 42 5-46 14-56 (334)
88 3lqk_A Dipicolinate synthase s 75.6 4.1 0.00014 34.9 5.4 46 6-52 7-53 (201)
89 2ywx_A Phosphoribosylaminoimid 74.4 33 0.0011 27.8 10.1 135 280-448 2-144 (157)
90 3igf_A ALL4481 protein; two-do 73.2 1.3 4.3E-05 42.3 1.8 37 6-42 1-38 (374)
91 3zqu_A Probable aromatic acid 73.1 4.2 0.00014 35.1 4.9 45 6-51 4-48 (209)
92 3qjg_A Epidermin biosynthesis 72.8 4.4 0.00015 33.8 4.9 44 7-51 6-49 (175)
93 3ug7_A Arsenical pump-driving 72.3 1.8 6E-05 41.0 2.6 40 6-45 25-65 (349)
94 3vot_A L-amino acid ligase, BL 72.3 32 0.0011 33.1 11.7 96 5-134 4-101 (425)
95 3pdi_B Nitrogenase MOFE cofact 71.5 15 0.00051 35.9 9.1 86 7-137 314-399 (458)
96 3q0i_A Methionyl-tRNA formyltr 71.3 13 0.00045 34.3 8.2 35 5-44 6-40 (318)
97 3l7i_A Teichoic acid biosynthe 71.3 4.6 0.00016 42.3 5.7 112 342-464 603-720 (729)
98 3mc3_A DSRE/DSRF-like family p 71.1 6.2 0.00021 31.3 5.2 45 5-49 14-61 (134)
99 2ywr_A Phosphoribosylglycinami 69.7 16 0.00056 31.5 8.0 103 6-139 1-110 (216)
100 4b4o_A Epimerase family protei 69.0 4.3 0.00015 37.0 4.4 33 7-43 1-33 (298)
101 1sbz_A Probable aromatic acid 68.0 3 0.0001 35.6 2.8 44 7-51 1-45 (197)
102 2yxb_A Coenzyme B12-dependent 67.7 4.9 0.00017 33.0 4.0 40 4-43 16-55 (161)
103 2i2c_A Probable inorganic poly 67.4 4.3 0.00015 36.7 3.9 52 357-428 36-93 (272)
104 2r8r_A Sensor protein; KDPD, P 67.1 7.9 0.00027 33.8 5.3 40 5-44 5-44 (228)
105 3tqq_A Methionyl-tRNA formyltr 67.0 13 0.00046 34.2 7.2 35 6-45 2-36 (314)
106 4dim_A Phosphoribosylglycinami 66.6 13 0.00045 35.4 7.5 87 6-133 7-97 (403)
107 2vqe_B 30S ribosomal protein S 65.9 59 0.002 28.8 10.8 34 110-143 158-193 (256)
108 3eag_A UDP-N-acetylmuramate:L- 65.7 6.1 0.00021 36.8 4.7 37 4-44 2-38 (326)
109 4a1f_A DNAB helicase, replicat 65.3 6 0.00021 37.0 4.6 41 8-48 48-88 (338)
110 3llv_A Exopolyphosphatase-rela 65.0 4.1 0.00014 32.3 3.0 39 1-44 1-39 (141)
111 1lss_A TRK system potassium up 64.9 4.9 0.00017 31.5 3.5 35 4-43 2-36 (140)
112 3of5_A Dethiobiotin synthetase 64.7 6.9 0.00023 34.3 4.6 37 4-40 1-39 (228)
113 1ccw_A Protein (glutamate muta 64.2 9.4 0.00032 30.3 5.0 38 6-43 3-40 (137)
114 2pn1_A Carbamoylphosphate synt 63.1 15 0.00051 33.9 6.9 34 5-44 3-38 (331)
115 3dfz_A SIRC, precorrin-2 dehyd 62.2 72 0.0025 27.6 10.6 153 269-448 25-186 (223)
116 2q6t_A DNAB replication FORK h 61.8 11 0.00037 36.8 5.9 40 8-47 202-242 (444)
117 3mjf_A Phosphoribosylamine--gl 61.8 6.5 0.00022 38.2 4.3 27 4-35 1-27 (431)
118 2yrx_A Phosphoribosylglycinami 61.5 37 0.0013 32.9 9.8 37 2-43 17-54 (451)
119 1y80_A Predicted cobalamin bin 61.2 9.9 0.00034 32.7 5.0 40 5-44 87-126 (210)
120 3av3_A Phosphoribosylglycinami 61.2 45 0.0015 28.6 9.1 103 6-139 3-112 (212)
121 3bgw_A DNAB-like replicative h 61.0 9.9 0.00034 37.1 5.4 41 8-48 199-239 (444)
122 2i2x_B MTAC, methyltransferase 59.5 13 0.00043 33.3 5.5 41 4-44 121-161 (258)
123 2h31_A Multifunctional protein 59.3 62 0.0021 31.0 10.3 137 277-446 265-410 (425)
124 3zq6_A Putative arsenical pump 59.1 10 0.00034 35.2 4.9 38 7-44 14-52 (324)
125 3io3_A DEHA2D07832P; chaperone 58.9 5.3 0.00018 37.6 2.9 42 4-45 15-59 (348)
126 4gi5_A Quinone reductase; prot 58.7 15 0.00051 33.2 5.8 36 6-41 22-60 (280)
127 3mcu_A Dipicolinate synthase, 58.4 8.8 0.0003 33.0 4.0 43 6-49 5-48 (207)
128 2ejb_A Probable aromatic acid 58.1 14 0.00049 31.1 5.3 44 7-51 2-45 (189)
129 3qvl_A Putative hydantoin race 57.9 44 0.0015 29.4 8.7 38 6-43 1-39 (245)
130 1g63_A Epidermin modifying enz 57.8 9.1 0.00031 32.1 3.9 45 7-52 3-47 (181)
131 1jkx_A GART;, phosphoribosylgl 56.4 65 0.0022 27.6 9.3 102 7-139 1-109 (212)
132 3to5_A CHEY homolog; alpha(5)b 56.2 18 0.00063 28.4 5.4 39 103-141 50-97 (134)
133 2hy5_A Putative sulfurtransfer 56.0 21 0.00073 27.8 5.7 44 7-50 1-48 (130)
134 1kjq_A GART 2, phosphoribosylg 55.9 62 0.0021 30.4 10.1 36 5-45 10-45 (391)
135 1qzu_A Hypothetical protein MD 55.5 12 0.00039 32.2 4.3 46 6-52 19-65 (206)
136 2q5c_A NTRC family transcripti 54.8 69 0.0024 27.0 9.1 43 101-146 133-175 (196)
137 3ezx_A MMCP 1, monomethylamine 54.3 15 0.00051 31.8 4.9 43 4-46 90-132 (215)
138 2gk4_A Conserved hypothetical 54.0 47 0.0016 29.0 8.0 27 17-45 28-54 (232)
139 1yt5_A Inorganic polyphosphate 53.8 8.7 0.0003 34.3 3.4 51 358-428 43-96 (258)
140 3tov_A Glycosyl transferase fa 53.8 28 0.00096 32.5 7.1 43 6-48 185-231 (349)
141 2lpm_A Two-component response 53.7 10 0.00036 29.4 3.4 37 101-137 44-85 (123)
142 4g65_A TRK system potassium up 53.4 4.1 0.00014 40.1 1.2 36 4-44 1-36 (461)
143 1id1_A Putative potassium chan 53.4 11 0.00037 30.4 3.6 33 6-43 3-35 (153)
144 3kjh_A CO dehydrogenase/acetyl 52.9 9.8 0.00033 33.3 3.6 38 7-44 1-38 (254)
145 2b8t_A Thymidine kinase; deoxy 52.4 53 0.0018 28.4 8.1 38 7-44 12-50 (223)
146 3dfu_A Uncharacterized protein 52.4 10 0.00035 33.2 3.5 37 1-43 2-38 (232)
147 2bln_A Protein YFBG; transfera 52.2 22 0.00077 32.5 5.9 33 7-44 1-33 (305)
148 3gl9_A Response regulator; bet 52.1 27 0.00093 26.2 5.7 39 102-140 38-85 (122)
149 2l2q_A PTS system, cellobiose- 52.0 19 0.00065 27.1 4.6 36 4-39 2-37 (109)
150 2hy6_A General control protein 51.3 25 0.00084 20.0 3.6 29 416-446 4-32 (34)
151 3bbn_B Ribosomal protein S2; s 51.1 23 0.00078 30.9 5.4 33 110-142 157-191 (231)
152 2qs7_A Uncharacterized protein 51.1 21 0.0007 28.6 4.9 44 8-51 9-53 (144)
153 4dll_A 2-hydroxy-3-oxopropiona 50.6 17 0.00058 33.5 5.0 35 4-43 29-63 (320)
154 2oxj_A Hybrid alpha/beta pepti 50.5 29 0.001 19.7 3.8 29 416-446 4-32 (34)
155 1u0t_A Inorganic polyphosphate 50.0 9.9 0.00034 35.0 3.2 53 354-428 75-131 (307)
156 3c3g_A Alpha/beta peptide with 50.0 29 0.00098 19.6 3.7 29 416-446 3-31 (33)
157 1eiw_A Hypothetical protein MT 50.0 27 0.00093 26.5 5.1 65 352-427 36-109 (111)
158 1jx7_A Hypothetical protein YC 50.0 22 0.00076 26.8 4.8 44 7-50 2-50 (117)
159 1p3y_1 MRSD protein; flavoprot 49.5 7.1 0.00024 33.2 1.9 45 6-51 8-52 (194)
160 2ixd_A LMBE-related protein; h 49.5 22 0.00077 31.3 5.3 22 96-117 83-104 (242)
161 4egb_A DTDP-glucose 4,6-dehydr 49.0 1.1E+02 0.0037 27.9 10.5 34 4-41 22-57 (346)
162 3fgn_A Dethiobiotin synthetase 48.2 20 0.00067 31.8 4.7 37 5-41 24-62 (251)
163 2lnd_A De novo designed protei 47.8 45 0.0016 23.2 5.4 48 375-427 50-100 (112)
164 3hn2_A 2-dehydropantoate 2-red 47.6 13 0.00045 34.1 3.7 42 6-53 2-43 (312)
165 3giu_A Pyrrolidone-carboxylate 47.5 16 0.00053 31.6 3.8 29 4-32 1-31 (215)
166 3c3f_A Alpha/beta peptide with 47.2 33 0.0011 19.4 3.7 29 416-446 4-32 (34)
167 3m48_A General control protein 47.1 30 0.001 19.6 3.5 29 416-446 3-31 (33)
168 2r85_A PURP protein PF1517; AT 47.1 17 0.00059 33.4 4.4 34 6-45 2-35 (334)
169 2p90_A Hypothetical protein CG 46.5 1.2E+02 0.0041 27.8 9.9 169 277-466 102-306 (319)
170 1o97_C Electron transferring f 45.9 29 0.001 31.0 5.5 42 98-139 100-147 (264)
171 3f6r_A Flavodoxin; FMN binding 45.7 28 0.00096 27.5 5.0 39 7-45 2-41 (148)
172 1rcu_A Conserved hypothetical 45.6 1.2E+02 0.0042 25.5 9.1 96 264-383 47-149 (195)
173 2vo1_A CTP synthase 1; pyrimid 45.5 23 0.00077 31.6 4.5 44 5-48 21-67 (295)
174 2pju_A Propionate catabolism o 45.1 30 0.001 30.1 5.3 29 357-386 64-92 (225)
175 2bni_A General control protein 45.0 32 0.0011 19.6 3.4 29 416-446 4-32 (34)
176 1ydg_A Trp repressor binding p 45.0 28 0.00094 29.6 5.1 42 1-42 1-43 (211)
177 3i83_A 2-dehydropantoate 2-red 44.8 12 0.00042 34.5 3.0 42 6-53 2-43 (320)
178 1uo4_A General control protein 44.6 38 0.0013 19.3 3.7 29 416-446 4-32 (34)
179 1p3y_1 MRSD protein; flavoprot 44.3 75 0.0026 26.8 7.6 139 277-427 9-185 (194)
180 2o6l_A UDP-glucuronosyltransfe 43.5 1.2E+02 0.0042 24.1 9.2 38 7-44 21-61 (170)
181 3lp8_A Phosphoribosylamine-gly 43.3 79 0.0027 30.5 8.7 36 101-136 74-112 (442)
182 3tqr_A Phosphoribosylglycinami 43.3 71 0.0024 27.4 7.4 108 3-140 2-114 (215)
183 3o1l_A Formyltetrahydrofolate 42.9 1.5E+02 0.0052 26.9 9.9 106 3-140 102-212 (302)
184 2g1u_A Hypothetical protein TM 42.7 29 0.00099 27.8 4.6 34 6-44 19-52 (155)
185 3t6k_A Response regulator rece 42.6 46 0.0016 25.5 5.8 39 102-140 40-87 (136)
186 3lqk_A Dipicolinate synthase s 42.6 1.5E+02 0.0053 25.0 10.4 146 277-427 8-185 (201)
187 1qkk_A DCTD, C4-dicarboxylate 42.5 73 0.0025 24.8 7.2 47 375-427 74-120 (155)
188 2q5c_A NTRC family transcripti 42.4 24 0.00081 29.9 4.2 51 355-406 50-103 (196)
189 1z82_A Glycerol-3-phosphate de 42.4 18 0.00063 33.5 3.8 33 6-43 14-46 (335)
190 3oti_A CALG3; calicheamicin, T 42.4 1.3E+02 0.0046 28.0 10.1 90 7-137 232-325 (398)
191 2qk4_A Trifunctional purine bi 42.3 94 0.0032 30.0 9.1 32 7-43 25-57 (452)
192 1efv_B Electron transfer flavo 42.1 37 0.0013 30.1 5.5 42 98-139 104-151 (255)
193 3afo_A NADH kinase POS5; alpha 42.0 20 0.00068 34.1 3.9 58 349-428 109-171 (388)
194 1psw_A ADP-heptose LPS heptosy 41.8 80 0.0027 28.9 8.3 40 7-46 181-225 (348)
195 2d1p_A TUSD, hypothetical UPF0 41.8 45 0.0015 26.5 5.5 44 6-49 12-59 (140)
196 3h2s_A Putative NADH-flavin re 41.7 26 0.00087 29.9 4.4 34 7-44 1-34 (224)
197 2ew2_A 2-dehydropantoate 2-red 41.6 20 0.0007 32.5 4.0 33 6-43 3-35 (316)
198 3ew7_A LMO0794 protein; Q8Y8U8 41.1 26 0.0009 29.6 4.4 34 7-44 1-34 (221)
199 2ark_A Flavodoxin; FMN, struct 41.1 31 0.0011 28.7 4.7 41 4-44 2-44 (188)
200 4hb9_A Similarities with proba 41.0 19 0.00063 34.1 3.7 31 6-41 1-31 (412)
201 3s2u_A UDP-N-acetylglucosamine 41.0 40 0.0014 31.5 6.0 26 354-381 92-120 (365)
202 3l4e_A Uncharacterized peptida 40.9 40 0.0014 28.8 5.4 45 267-311 18-62 (206)
203 1dhr_A Dihydropteridine reduct 40.8 30 0.001 30.1 4.8 40 1-43 1-40 (241)
204 2r6a_A DNAB helicase, replicat 40.8 35 0.0012 33.2 5.7 40 8-47 205-245 (454)
205 3m6m_D Sensory/regulatory prot 40.7 37 0.0013 26.3 5.0 39 102-140 50-99 (143)
206 3fwz_A Inner membrane protein 40.7 20 0.00068 28.2 3.3 34 6-44 7-40 (140)
207 3f6p_A Transcriptional regulat 40.6 47 0.0016 24.6 5.4 39 102-140 38-82 (120)
208 2ip4_A PURD, phosphoribosylami 40.4 1.1E+02 0.0037 29.1 9.1 31 7-42 1-32 (417)
209 3czc_A RMPB; alpha/beta sandwi 40.4 32 0.0011 25.9 4.2 38 3-40 15-54 (110)
210 2zki_A 199AA long hypothetical 40.4 27 0.00091 29.3 4.3 39 5-44 3-42 (199)
211 3l4b_C TRKA K+ channel protien 40.1 11 0.00038 32.4 1.8 33 7-44 1-33 (218)
212 3qsg_A NAD-binding phosphogluc 40.0 16 0.00056 33.5 3.0 35 4-43 22-57 (312)
213 3ghy_A Ketopantoate reductase 39.7 11 0.00038 35.0 1.8 43 6-53 3-45 (335)
214 1yb4_A Tartronic semialdehyde 39.7 24 0.00082 31.8 4.1 32 5-41 2-33 (295)
215 1gsa_A Glutathione synthetase; 39.7 23 0.0008 32.1 4.1 38 7-44 2-42 (316)
216 1efp_B ETF, protein (electron 39.6 37 0.0013 30.0 5.1 41 99-139 102-148 (252)
217 3r8n_B 30S ribosomal protein S 39.6 79 0.0027 27.2 7.0 33 110-142 149-183 (218)
218 1ks9_A KPA reductase;, 2-dehyd 39.4 25 0.00084 31.5 4.1 33 7-44 1-33 (291)
219 3qjg_A Epidermin biosynthesis 39.1 1.2E+02 0.0041 25.0 7.8 113 277-401 6-142 (175)
220 2x4g_A Nucleoside-diphosphate- 39.1 33 0.0011 31.5 5.0 36 5-44 12-47 (342)
221 2hmt_A YUAA protein; RCK, KTN, 39.0 18 0.00062 28.2 2.8 38 1-43 1-38 (144)
222 3qxc_A Dethiobiotin synthetase 39.0 31 0.0011 30.4 4.5 35 6-40 20-56 (242)
223 3doj_A AT3G25530, dehydrogenas 38.8 29 0.001 31.7 4.6 35 4-43 19-53 (310)
224 1wcv_1 SOJ, segregation protei 38.7 28 0.00096 30.7 4.3 44 1-45 1-46 (257)
225 3da8_A Probable 5'-phosphoribo 38.7 69 0.0024 27.5 6.5 109 2-140 8-120 (215)
226 2raf_A Putative dinucleotide-b 38.5 28 0.00095 29.7 4.1 34 5-43 18-51 (209)
227 3dhn_A NAD-dependent epimerase 37.9 62 0.0021 27.4 6.4 36 6-45 4-39 (227)
228 3nbm_A PTS system, lactose-spe 37.8 43 0.0015 25.2 4.5 38 4-41 4-41 (108)
229 3g0o_A 3-hydroxyisobutyrate de 37.6 20 0.00068 32.7 3.2 35 4-43 5-39 (303)
230 2a5l_A Trp repressor binding p 37.6 40 0.0014 28.1 5.0 39 6-44 5-44 (200)
231 2r2v_A GCN4 leucine zipper; co 37.5 56 0.0019 18.6 3.7 29 416-446 4-32 (34)
232 2an1_A Putative kinase; struct 37.3 19 0.00064 32.7 2.9 53 354-428 63-119 (292)
233 2a3d_A Protein (de novo three- 36.9 82 0.0028 20.2 5.3 30 431-460 4-33 (73)
234 1p9o_A Phosphopantothenoylcyst 36.8 23 0.00078 32.6 3.3 24 22-45 67-90 (313)
235 4g6h_A Rotenone-insensitive NA 36.8 20 0.00069 35.5 3.2 37 4-45 40-76 (502)
236 2yvq_A Carbamoyl-phosphate syn 36.8 30 0.001 27.6 3.7 97 10-137 27-131 (143)
237 2c5m_A CTP synthase; cytidine 36.6 31 0.001 30.6 3.9 42 6-47 22-66 (294)
238 2qyt_A 2-dehydropantoate 2-red 36.1 15 0.0005 33.7 2.0 34 5-43 7-46 (317)
239 2yw2_A Phosphoribosylamine--gl 36.1 1.3E+02 0.0043 28.6 8.9 32 7-43 1-33 (424)
240 3hwr_A 2-dehydropantoate 2-red 35.9 26 0.0009 32.2 3.7 44 5-53 18-61 (318)
241 1ydh_A AT5G11950; structural g 35.7 55 0.0019 28.2 5.4 102 265-384 31-143 (216)
242 3r6d_A NAD-dependent epimerase 35.6 37 0.0013 28.9 4.5 37 4-44 2-40 (221)
243 2dpo_A L-gulonate 3-dehydrogen 35.3 27 0.00094 32.2 3.7 38 1-43 1-38 (319)
244 2fb6_A Conserved hypothetical 35.2 36 0.0012 26.1 3.8 42 6-47 7-52 (117)
245 2jk1_A HUPR, hydrogenase trans 35.2 1E+02 0.0035 23.3 6.8 47 376-427 72-118 (139)
246 2r6j_A Eugenol synthase 1; phe 35.1 39 0.0013 30.7 4.8 40 1-44 5-45 (318)
247 4dzz_A Plasmid partitioning pr 35.0 44 0.0015 27.9 4.8 38 7-44 1-40 (206)
248 3r5x_A D-alanine--D-alanine li 35.0 19 0.00065 32.7 2.6 42 4-45 1-46 (307)
249 3ic5_A Putative saccharopine d 34.7 35 0.0012 25.3 3.8 33 6-43 5-38 (118)
250 1kd8_B GABH BLL, GCN4 acid bas 34.6 61 0.0021 18.7 3.5 29 416-446 4-32 (36)
251 2w36_A Endonuclease V; hypoxan 34.4 59 0.002 28.1 5.3 38 102-139 93-139 (225)
252 3tsa_A SPNG, NDP-rhamnosyltran 34.3 40 0.0014 31.6 4.9 29 354-384 114-143 (391)
253 3dqp_A Oxidoreductase YLBE; al 34.2 31 0.0011 29.3 3.8 34 7-44 1-34 (219)
254 2a33_A Hypothetical protein; s 34.2 2.1E+02 0.0072 24.4 8.9 102 265-384 35-147 (215)
255 2h78_A Hibadh, 3-hydroxyisobut 34.2 36 0.0012 30.8 4.3 34 5-43 2-35 (302)
256 2ahr_A Putative pyrroline carb 34.0 27 0.00094 30.8 3.4 34 4-42 1-34 (259)
257 3c3m_A Response regulator rece 33.7 73 0.0025 24.3 5.6 39 102-140 39-86 (138)
258 3n7t_A Macrophage binding prot 33.6 83 0.0028 27.6 6.4 39 6-44 9-58 (247)
259 3c1o_A Eugenol synthase; pheny 33.6 36 0.0012 30.9 4.3 36 5-44 3-38 (321)
260 3d7l_A LIN1944 protein; APC893 33.5 44 0.0015 27.8 4.6 34 5-43 2-35 (202)
261 3u7q_A Nitrogenase molybdenum- 33.4 35 0.0012 33.6 4.4 34 101-137 408-441 (492)
262 3obb_A Probable 3-hydroxyisobu 33.4 35 0.0012 31.1 4.0 32 5-41 2-33 (300)
263 3qua_A Putative uncharacterize 33.1 2E+02 0.0069 24.2 8.5 101 265-383 43-154 (199)
264 4hn9_A Iron complex transport 33.0 38 0.0013 31.3 4.4 35 104-138 110-144 (335)
265 2q62_A ARSH; alpha/beta, flavo 33.0 54 0.0018 28.9 5.1 38 4-41 32-72 (247)
266 1qyd_A Pinoresinol-lariciresin 32.8 41 0.0014 30.4 4.5 35 6-44 4-38 (313)
267 3ia7_A CALG4; glycosysltransfe 32.7 73 0.0025 29.7 6.5 27 354-382 102-130 (402)
268 3ono_A Ribose/galactose isomer 32.7 50 0.0017 28.3 4.5 39 4-42 1-41 (214)
269 3b6i_A Flavoprotein WRBA; flav 32.4 51 0.0018 27.4 4.8 37 6-42 1-39 (198)
270 1mio_B Nitrogenase molybdenum 32.4 46 0.0016 32.4 4.9 34 101-137 376-409 (458)
271 3hly_A Flavodoxin-like domain; 32.3 53 0.0018 26.5 4.7 37 7-43 1-38 (161)
272 1bg6_A N-(1-D-carboxylethyl)-L 32.2 36 0.0012 31.6 4.1 33 6-43 4-36 (359)
273 3gt7_A Sensor protein; structu 32.1 76 0.0026 24.8 5.6 38 103-140 44-90 (154)
274 4eg0_A D-alanine--D-alanine li 32.1 82 0.0028 28.6 6.5 39 6-44 13-55 (317)
275 3ehd_A Uncharacterized conserv 32.1 2E+02 0.007 23.3 9.2 41 4-44 2-43 (162)
276 3obi_A Formyltetrahydrofolate 32.0 2.8E+02 0.0096 24.9 11.6 104 4-139 87-196 (288)
277 3pdi_A Nitrogenase MOFE cofact 31.8 33 0.0011 33.8 3.8 34 101-137 392-425 (483)
278 1pjq_A CYSG, siroheme synthase 31.8 3.6E+02 0.012 26.0 12.4 151 270-446 7-166 (457)
279 1meo_A Phosophoribosylglycinam 31.8 1.4E+02 0.0047 25.4 7.3 103 7-140 1-110 (209)
280 1hdo_A Biliverdin IX beta redu 31.7 60 0.0021 26.8 5.2 34 7-44 4-37 (206)
281 3h4t_A Glycosyltransferase GTF 31.7 1.1E+02 0.0037 28.9 7.5 35 279-315 3-37 (404)
282 1iow_A DD-ligase, DDLB, D-ALA\ 31.6 60 0.0021 29.1 5.5 39 6-44 2-44 (306)
283 3gpi_A NAD-dependent epimerase 31.6 49 0.0017 29.4 4.8 34 6-44 3-36 (286)
284 1qv9_A F420-dependent methylen 31.5 1.1E+02 0.0037 26.6 6.3 43 100-142 54-102 (283)
285 1kyq_A Met8P, siroheme biosynt 31.5 2.8E+02 0.0095 24.7 9.9 34 413-446 172-208 (274)
286 3goc_A Endonuclease V; alpha-b 31.3 71 0.0024 27.8 5.3 38 101-138 96-142 (237)
287 1xp8_A RECA protein, recombina 31.3 92 0.0032 29.2 6.7 39 8-46 76-114 (366)
288 3gi1_A LBP, laminin-binding pr 31.3 1.2E+02 0.0041 27.2 7.3 79 34-138 178-258 (286)
289 3s40_A Diacylglycerol kinase; 31.1 92 0.0031 28.2 6.6 27 358-384 65-97 (304)
290 1tmy_A CHEY protein, TMY; chem 30.6 90 0.0031 22.8 5.6 39 103-141 40-85 (120)
291 3ego_A Probable 2-dehydropanto 30.5 32 0.0011 31.4 3.3 42 6-53 2-44 (307)
292 2wq1_A General control protein 30.1 78 0.0027 17.9 3.8 29 416-446 3-31 (33)
293 3bul_A Methionine synthase; tr 30.1 51 0.0018 33.1 4.9 43 5-47 97-139 (579)
294 3ea0_A ATPase, para family; al 30.1 38 0.0013 29.3 3.7 41 5-45 2-45 (245)
295 3dm5_A SRP54, signal recogniti 30.0 68 0.0023 31.1 5.6 42 6-47 100-141 (443)
296 3l6d_A Putative oxidoreductase 30.0 31 0.001 31.5 3.1 33 5-42 8-40 (306)
297 3cg0_A Response regulator rece 29.7 85 0.0029 23.7 5.4 40 100-139 44-90 (140)
298 2xdq_B Light-independent proto 29.4 43 0.0015 33.2 4.2 34 101-137 363-396 (511)
299 3vps_A TUNA, NAD-dependent epi 29.4 40 0.0014 30.4 3.8 37 5-45 6-42 (321)
300 1f4p_A Flavodoxin; electron tr 29.4 47 0.0016 26.1 3.8 37 7-43 1-38 (147)
301 3i4f_A 3-oxoacyl-[acyl-carrier 29.4 57 0.002 28.6 4.8 40 1-43 1-40 (264)
302 1zgz_A Torcad operon transcrip 29.3 87 0.003 22.9 5.3 40 101-140 37-82 (122)
303 1jay_A Coenzyme F420H2:NADP+ o 29.3 47 0.0016 28.0 4.0 31 7-42 1-32 (212)
304 1pno_A NAD(P) transhydrogenase 29.3 56 0.0019 26.7 4.0 38 8-45 25-65 (180)
305 3aek_B Light-independent proto 29.2 45 0.0015 33.2 4.4 34 101-137 340-373 (525)
306 3md9_A Hemin-binding periplasm 29.1 48 0.0017 29.0 4.2 35 104-138 53-89 (255)
307 3pef_A 6-phosphogluconate dehy 29.0 46 0.0016 29.8 4.1 33 6-43 1-33 (287)
308 3a10_A Response regulator; pho 29.0 1.2E+02 0.0041 21.8 6.0 39 102-140 37-82 (116)
309 2gkg_A Response regulator homo 28.8 77 0.0026 23.3 4.9 46 375-427 79-124 (127)
310 3lte_A Response regulator; str 28.8 89 0.003 23.3 5.3 37 1-41 1-37 (132)
311 3lyu_A Putative hydrogenase; t 28.7 41 0.0014 26.6 3.3 37 7-46 19-55 (142)
312 1z7e_A Protein aRNA; rossmann 28.7 45 0.0015 34.2 4.4 40 101-140 66-106 (660)
313 2rjn_A Response regulator rece 28.6 91 0.0031 24.2 5.5 41 102-142 43-90 (154)
314 1d4o_A NADP(H) transhydrogenas 28.6 58 0.002 26.7 4.0 38 8-45 24-64 (184)
315 3q9l_A Septum site-determining 28.6 57 0.0019 28.4 4.6 38 7-44 2-41 (260)
316 2etv_A Iron(III) ABC transport 28.6 49 0.0017 30.7 4.3 34 104-137 90-124 (346)
317 3qrx_B Melittin; calcium-bindi 28.2 16 0.00053 19.0 0.4 17 365-381 1-17 (26)
318 3u7q_B Nitrogenase molybdenum- 28.2 56 0.0019 32.5 4.8 34 101-137 429-469 (523)
319 1t1j_A Hypothetical protein; s 28.2 80 0.0027 24.5 4.7 34 5-38 6-47 (125)
320 3d7n_A Flavodoxin, WRBA-like p 28.2 17 0.0006 30.5 1.0 31 1-31 1-32 (193)
321 3k96_A Glycerol-3-phosphate de 28.1 38 0.0013 31.8 3.4 33 6-43 29-61 (356)
322 3grc_A Sensor protein, kinase; 27.9 1E+02 0.0035 23.3 5.6 38 1-42 1-38 (140)
323 1tvm_A PTS system, galactitol- 27.9 1E+02 0.0034 23.2 5.2 37 5-41 20-57 (113)
324 3n0v_A Formyltetrahydrofolate 27.9 3.1E+02 0.011 24.5 9.4 106 3-140 87-197 (286)
325 2wm1_A 2-amino-3-carboxymucona 27.9 62 0.0021 29.7 4.9 71 232-312 101-174 (336)
326 4huj_A Uncharacterized protein 27.8 30 0.001 29.8 2.4 32 6-42 23-54 (220)
327 3e8x_A Putative NAD-dependent 27.8 48 0.0017 28.4 3.9 35 6-44 21-55 (236)
328 3kkl_A Probable chaperone prot 27.7 88 0.003 27.4 5.6 39 6-44 3-52 (244)
329 2rjn_A Response regulator rece 27.6 35 0.0012 26.8 2.7 47 375-427 78-125 (154)
330 2qv7_A Diacylglycerol kinase D 27.6 96 0.0033 28.6 6.1 27 358-384 82-114 (337)
331 1g3q_A MIND ATPase, cell divis 27.4 65 0.0022 27.6 4.7 37 8-44 3-41 (237)
332 3to5_A CHEY homolog; alpha(5)b 27.4 1.2E+02 0.0043 23.4 5.9 47 375-427 86-132 (134)
333 2vns_A Metalloreductase steap3 27.4 43 0.0015 28.6 3.4 34 5-43 27-60 (215)
334 4amg_A Snogd; transferase, pol 27.1 2.1E+02 0.0072 26.4 8.7 41 6-46 236-280 (400)
335 1hjr_A Holliday junction resol 27.0 89 0.003 25.3 5.0 46 94-139 43-103 (158)
336 3d3j_A Enhancer of mRNA-decapp 27.0 59 0.002 29.7 4.4 34 7-43 133-168 (306)
337 3kcn_A Adenylate cyclase homol 26.9 1.8E+02 0.0061 22.3 7.0 47 375-427 75-122 (151)
338 3end_A Light-independent proto 26.9 70 0.0024 28.9 5.0 39 6-44 40-79 (307)
339 3eod_A Protein HNR; response r 26.9 99 0.0034 23.0 5.3 39 103-141 44-89 (130)
340 1cp2_A CP2, nitrogenase iron p 26.9 61 0.0021 28.5 4.5 37 8-44 3-39 (269)
341 1e2b_A Enzyme IIB-cellobiose; 26.8 1.2E+02 0.0042 22.4 5.5 36 6-41 3-38 (106)
342 3sbx_A Putative uncharacterize 26.8 1E+02 0.0035 25.8 5.5 39 5-43 12-53 (189)
343 3otg_A CALG1; calicheamicin, T 26.8 3.8E+02 0.013 24.7 11.1 38 8-45 243-282 (412)
344 2a9o_A Response regulator; ess 26.8 1.1E+02 0.0039 22.1 5.5 39 103-141 38-82 (120)
345 3cky_A 2-hydroxymethyl glutara 26.8 70 0.0024 28.7 4.9 33 5-42 3-35 (301)
346 3sbx_A Putative uncharacterize 26.7 2.8E+02 0.0095 23.1 9.9 101 265-383 34-145 (189)
347 2fsv_C NAD(P) transhydrogenase 26.4 65 0.0022 26.9 4.0 38 8-45 48-88 (203)
348 2q8p_A Iron-regulated surface 26.4 52 0.0018 28.8 3.9 33 106-138 56-89 (260)
349 2zts_A Putative uncharacterize 26.4 26 0.00089 30.4 1.8 123 8-139 32-180 (251)
350 1rpn_A GDP-mannose 4,6-dehydra 26.3 60 0.002 29.6 4.4 36 5-44 13-48 (335)
351 1byi_A Dethiobiotin synthase; 26.2 69 0.0024 27.1 4.6 33 8-40 3-36 (224)
352 3f67_A Putative dienelactone h 26.2 84 0.0029 26.4 5.2 37 6-42 31-67 (241)
353 1txg_A Glycerol-3-phosphate de 26.0 38 0.0013 31.1 3.0 31 7-42 1-31 (335)
354 1srr_A SPO0F, sporulation resp 26.0 93 0.0032 22.9 4.9 37 104-140 41-84 (124)
355 1mb3_A Cell division response 26.0 99 0.0034 22.7 5.1 37 103-139 38-83 (124)
356 3ado_A Lambda-crystallin; L-gu 26.0 37 0.0012 31.3 2.8 38 1-43 1-38 (319)
357 2qzj_A Two-component response 26.0 1.1E+02 0.0037 23.2 5.3 39 102-140 40-84 (136)
358 3pdu_A 3-hydroxyisobutyrate de 26.0 47 0.0016 29.8 3.5 33 6-43 1-33 (287)
359 1vi6_A 30S ribosomal protein S 25.9 54 0.0018 28.0 3.6 33 110-142 115-149 (208)
360 3rsc_A CALG2; TDP, enediyne, s 25.8 84 0.0029 29.6 5.6 35 278-314 22-56 (415)
361 3d3k_A Enhancer of mRNA-decapp 25.8 65 0.0022 28.6 4.3 34 7-43 86-121 (259)
362 1djl_A Transhydrogenase DIII; 25.8 67 0.0023 26.9 4.0 38 8-45 47-87 (207)
363 3oh8_A Nucleoside-diphosphate 25.5 63 0.0022 31.9 4.7 35 6-44 147-181 (516)
364 2r7a_A Bacterial heme binding 25.5 61 0.0021 28.3 4.2 33 105-137 54-88 (256)
365 4e7p_A Response regulator; DNA 25.4 1.1E+02 0.0038 23.5 5.5 40 101-140 57-103 (150)
366 3dtt_A NADP oxidoreductase; st 25.4 63 0.0022 28.2 4.2 34 6-44 19-52 (245)
367 1qv9_A F420-dependent methylen 25.4 3.4E+02 0.011 23.6 15.4 103 272-419 25-138 (283)
368 3ius_A Uncharacterized conserv 25.4 35 0.0012 30.4 2.6 34 6-44 5-38 (286)
369 1xhf_A DYE resistance, aerobic 25.3 1.2E+02 0.0042 22.1 5.5 39 102-140 39-83 (123)
370 3uhj_A Probable glycerol dehyd 25.3 57 0.002 30.9 4.1 28 357-385 107-139 (387)
371 3bfv_A CAPA1, CAPB2, membrane 25.2 1E+02 0.0034 27.4 5.6 41 5-45 80-122 (271)
372 1ehi_A LMDDL2, D-alanine:D-lac 25.2 65 0.0022 30.3 4.5 39 5-43 2-45 (377)
373 3ouz_A Biotin carboxylase; str 25.1 1.9E+02 0.0064 27.7 8.0 33 7-44 7-39 (446)
374 2o8n_A APOA-I binding protein; 25.0 73 0.0025 28.4 4.5 34 7-43 80-115 (265)
375 2b69_A UDP-glucuronate decarbo 25.0 67 0.0023 29.4 4.5 35 5-43 26-60 (343)
376 1jzt_A Hypothetical 27.5 kDa p 24.8 58 0.002 28.6 3.8 34 7-43 59-94 (246)
377 2c20_A UDP-glucose 4-epimerase 24.8 66 0.0023 29.2 4.4 33 7-43 2-34 (330)
378 4ezb_A Uncharacterized conserv 24.7 52 0.0018 30.1 3.7 33 6-43 24-57 (317)
379 3rpe_A MDAB, modulator of drug 24.7 75 0.0026 27.3 4.4 39 4-42 23-68 (218)
380 3f8d_A Thioredoxin reductase ( 24.7 56 0.0019 29.3 3.9 33 6-43 15-47 (323)
381 3psh_A Protein HI_1472; substr 24.7 66 0.0023 29.3 4.4 36 104-139 78-114 (326)
382 1pzg_A LDH, lactate dehydrogen 24.6 51 0.0018 30.5 3.6 36 4-44 7-43 (331)
383 1fy2_A Aspartyl dipeptidase; s 24.6 2E+02 0.0068 24.7 7.2 45 264-310 21-65 (229)
384 2xj4_A MIPZ; replication, cell 24.5 79 0.0027 28.2 4.8 39 6-44 3-43 (286)
385 3enk_A UDP-glucose 4-epimerase 24.5 72 0.0025 29.1 4.7 35 5-43 4-38 (341)
386 3nrb_A Formyltetrahydrofolate 24.5 3.8E+02 0.013 24.0 11.5 104 4-139 86-195 (287)
387 1u9c_A APC35852; structural ge 24.5 1.2E+02 0.0042 25.7 5.9 38 7-44 6-52 (224)
388 4fzr_A SSFS6; structural genom 24.4 1E+02 0.0034 28.9 5.8 89 8-137 228-326 (398)
389 3ox4_A Alcohol dehydrogenase 2 24.4 80 0.0028 29.8 5.0 44 265-310 20-63 (383)
390 3qha_A Putative oxidoreductase 24.2 44 0.0015 30.2 3.0 33 6-43 15-47 (296)
391 3fet_A Electron transfer flavo 24.2 1.2E+02 0.0042 24.7 5.4 40 98-139 59-101 (166)
392 2xdo_A TETX2 protein; tetracyc 24.2 60 0.0021 30.6 4.1 39 1-44 21-59 (398)
393 2gf2_A Hibadh, 3-hydroxyisobut 24.1 54 0.0018 29.4 3.6 31 7-42 1-31 (296)
394 3ga2_A Endonuclease V; alpha-b 24.1 84 0.0029 27.5 4.5 30 109-138 108-144 (246)
395 2pl1_A Transcriptional regulat 24.1 1.5E+02 0.0052 21.4 5.8 39 102-140 36-81 (121)
396 3slg_A PBGP3 protein; structur 24.0 59 0.002 30.2 4.0 35 6-44 24-59 (372)
397 3cu5_A Two component transcrip 24.0 1.1E+02 0.0038 23.3 5.1 37 103-139 42-85 (141)
398 3nva_A CTP synthase; rossman f 23.9 76 0.0026 31.4 4.7 42 6-47 2-46 (535)
399 4gbj_A 6-phosphogluconate dehy 23.9 72 0.0024 28.9 4.4 29 8-41 7-35 (297)
400 3i42_A Response regulator rece 23.9 1.1E+02 0.0037 22.7 4.9 39 101-139 38-85 (127)
401 3rp8_A Flavoprotein monooxygen 23.9 56 0.0019 30.9 3.8 35 4-43 21-55 (407)
402 3g17_A Similar to 2-dehydropan 23.9 26 0.00089 31.7 1.4 33 6-43 2-34 (294)
403 2bru_C NAD(P) transhydrogenase 23.8 62 0.0021 26.5 3.3 38 8-45 32-72 (186)
404 3rqi_A Response regulator prot 23.8 88 0.003 25.5 4.6 39 102-140 43-88 (184)
405 2gas_A Isoflavone reductase; N 23.7 66 0.0023 28.8 4.2 35 6-44 2-36 (307)
406 3foj_A Uncharacterized protein 23.7 1.6E+02 0.0053 21.2 5.6 32 7-42 57-88 (100)
407 2rdm_A Response regulator rece 23.7 1.4E+02 0.0048 22.0 5.6 38 102-139 41-87 (132)
408 3l77_A Short-chain alcohol deh 23.6 80 0.0027 27.0 4.5 34 7-43 2-35 (235)
409 1f0y_A HCDH, L-3-hydroxyacyl-C 23.6 62 0.0021 29.3 3.9 33 6-43 15-47 (302)
410 3zzm_A Bifunctional purine bio 23.2 83 0.0028 30.8 4.7 50 5-65 8-57 (523)
411 3c85_A Putative glutathione-re 23.2 46 0.0016 27.3 2.7 34 6-44 39-73 (183)
412 3hn7_A UDP-N-acetylmuramate-L- 23.2 72 0.0025 31.6 4.6 35 6-44 19-53 (524)
413 4ep4_A Crossover junction endo 23.1 1.8E+02 0.006 23.8 6.1 47 93-139 46-107 (166)
414 3bch_A 40S ribosomal protein S 23.1 63 0.0022 28.5 3.6 33 110-142 151-185 (253)
415 2wam_A RV2714, conserved hypot 23.1 4.5E+02 0.015 24.3 12.0 169 277-466 142-343 (351)
416 3m3h_A OPRT, oprtase, orotate 23.0 1.3E+02 0.0046 26.0 5.7 28 110-137 88-117 (234)
417 2afh_E Nitrogenase iron protei 23.0 86 0.0029 28.0 4.7 38 7-44 2-40 (289)
418 3dez_A OPRT, oprtase, orotate 22.9 1.4E+02 0.0048 26.1 5.9 28 110-137 100-129 (243)
419 3p0r_A Azoreductase; structura 22.9 65 0.0022 27.4 3.7 37 5-41 3-46 (211)
420 2f1k_A Prephenate dehydrogenas 22.7 68 0.0023 28.4 4.0 31 7-42 1-31 (279)
421 2c29_D Dihydroflavonol 4-reduc 22.6 68 0.0023 29.3 4.1 37 1-42 1-37 (337)
422 3cio_A ETK, tyrosine-protein k 22.6 1.1E+02 0.0037 27.7 5.3 40 6-45 103-144 (299)
423 4e21_A 6-phosphogluconate dehy 22.6 51 0.0018 30.9 3.2 33 6-43 22-54 (358)
424 2rh8_A Anthocyanidin reductase 22.6 77 0.0026 28.8 4.4 32 7-42 10-41 (338)
425 1n2z_A Vitamin B12 transport p 22.6 79 0.0027 27.4 4.3 35 104-138 51-87 (245)
426 3u7i_A FMN-dependent NADH-azor 22.6 71 0.0024 27.5 3.9 39 3-41 1-48 (223)
427 4id9_A Short-chain dehydrogena 22.6 68 0.0023 29.4 4.0 35 6-44 19-53 (347)
428 2o1e_A YCDH; alpha-beta protei 22.5 1.9E+02 0.0065 26.3 7.0 78 34-137 189-268 (312)
429 2vrn_A Protease I, DR1199; cys 22.5 1.6E+02 0.0055 24.1 6.1 38 6-44 9-46 (190)
430 1mio_A Nitrogenase molybdenum 22.5 61 0.0021 32.3 3.8 35 100-137 446-480 (533)
431 2q1w_A Putative nucleotide sug 22.4 81 0.0028 28.7 4.5 34 6-43 21-54 (333)
432 1xjc_A MOBB protein homolog; s 22.4 1.4E+02 0.0047 24.4 5.4 40 6-45 3-43 (169)
433 2ph1_A Nucleotide-binding prot 22.3 85 0.0029 27.5 4.5 41 6-46 17-59 (262)
434 3c1a_A Putative oxidoreductase 22.3 4.2E+02 0.014 23.6 10.7 106 278-405 12-126 (315)
435 2xxa_A Signal recognition part 22.3 1.3E+02 0.0045 28.9 6.1 41 7-47 101-142 (433)
436 1mv8_A GMD, GDP-mannose 6-dehy 22.3 79 0.0027 30.4 4.6 32 7-43 1-32 (436)
437 3gg2_A Sugar dehydrogenase, UD 22.2 63 0.0022 31.4 3.8 32 7-43 3-34 (450)
438 3ot1_A 4-methyl-5(B-hydroxyeth 22.2 1.5E+02 0.0051 25.0 5.9 38 6-44 9-46 (208)
439 1p6q_A CHEY2; chemotaxis, sign 22.1 1.2E+02 0.004 22.5 4.8 38 102-139 43-89 (129)
440 1u7z_A Coenzyme A biosynthesis 22.1 68 0.0023 27.8 3.6 23 22-44 36-58 (226)
441 4ao6_A Esterase; hydrolase, th 22.1 74 0.0025 27.8 4.0 39 6-44 55-95 (259)
442 2r79_A Periplasmic binding pro 22.1 85 0.0029 27.9 4.5 33 105-137 54-88 (283)
443 3k9g_A PF-32 protein; ssgcid, 22.0 77 0.0026 27.8 4.2 39 6-45 26-66 (267)
444 1t5b_A Acyl carrier protein ph 22.0 86 0.0029 26.0 4.3 37 6-42 1-43 (201)
445 3l18_A Intracellular protease 21.9 1.9E+02 0.0064 23.1 6.3 39 5-44 1-39 (168)
446 3c24_A Putative oxidoreductase 21.9 87 0.003 27.9 4.5 32 6-42 11-43 (286)
447 3l9w_A Glutathione-regulated p 21.7 57 0.0019 31.3 3.3 37 4-45 2-38 (413)
448 1vpd_A Tartronate semialdehyde 21.7 97 0.0033 27.7 4.8 31 7-42 6-36 (299)
449 4gwg_A 6-phosphogluconate dehy 21.6 60 0.0021 31.9 3.5 35 4-43 2-36 (484)
450 2bon_A Lipid kinase; DAG kinas 21.6 2E+02 0.0068 26.3 7.0 82 277-385 30-119 (332)
451 3lrx_A Putative hydrogenase; a 21.6 60 0.0021 26.1 3.0 37 7-46 24-60 (158)
452 1hyq_A MIND, cell division inh 21.5 1E+02 0.0035 26.9 4.9 36 9-44 5-41 (263)
453 1zi8_A Carboxymethylenebutenol 21.4 1.2E+02 0.0041 25.3 5.2 37 7-43 28-64 (236)
454 3s40_A Diacylglycerol kinase; 21.3 1.1E+02 0.0038 27.7 5.1 45 1-45 3-50 (304)
455 1kd8_A GABH AIV, GCN4 acid bas 21.2 1.3E+02 0.0044 17.3 3.5 29 416-446 4-32 (36)
456 3eme_A Rhodanese-like domain p 21.2 1.4E+02 0.0048 21.5 4.9 33 6-42 56-88 (103)
457 4hcj_A THIJ/PFPI domain protei 21.1 1.9E+02 0.0065 23.7 6.1 36 8-44 9-45 (177)
458 1orr_A CDP-tyvelose-2-epimeras 21.1 85 0.0029 28.6 4.4 32 7-42 2-33 (347)
459 1qgu_B Protein (nitrogenase mo 21.1 87 0.003 31.0 4.6 34 101-137 425-465 (519)
460 2vzf_A NADH-dependent FMN redu 21.1 94 0.0032 25.9 4.3 36 6-41 2-41 (197)
461 3j20_B 30S ribosomal protein S 21.0 75 0.0026 27.0 3.5 34 109-142 110-145 (202)
462 3c97_A Signal transduction his 21.0 1.8E+02 0.006 21.9 5.8 37 103-139 47-95 (140)
463 1v5e_A Pyruvate oxidase; oxido 21.0 2.8E+02 0.0095 27.8 8.5 27 357-383 69-101 (590)
464 1g63_A Epidermin modifying enz 21.0 3.5E+02 0.012 22.2 10.5 136 278-426 4-176 (181)
465 2c5a_A GDP-mannose-3', 5'-epim 21.0 1.2E+02 0.004 28.3 5.4 35 6-44 29-63 (379)
466 3kto_A Response regulator rece 20.9 1.2E+02 0.004 22.9 4.6 39 1-43 1-39 (136)
467 1zco_A 2-dehydro-3-deoxyphosph 20.8 3.4E+02 0.012 23.9 8.0 52 375-426 191-256 (262)
468 1i36_A Conserved hypothetical 20.8 54 0.0019 28.8 2.8 29 7-40 1-29 (264)
469 3guy_A Short-chain dehydrogena 20.7 75 0.0026 27.1 3.7 34 7-43 1-34 (230)
470 3g79_A NDP-N-acetyl-D-galactos 20.7 1.1E+02 0.0039 29.8 5.2 36 5-45 17-54 (478)
471 3ih5_A Electron transfer flavo 20.6 89 0.003 26.8 4.0 108 6-138 3-122 (217)
472 1qo0_D AMIR; binding protein, 20.5 2.9E+02 0.01 22.3 7.4 53 369-427 69-124 (196)
473 3pp8_A Glyoxylate/hydroxypyruv 20.5 4E+02 0.014 24.2 8.7 28 277-311 140-167 (315)
474 3ko8_A NAD-dependent epimerase 20.5 88 0.003 28.0 4.3 33 7-43 1-33 (312)
475 3nhm_A Response regulator; pro 20.5 92 0.0031 23.3 3.9 45 376-427 77-121 (133)
476 4e5s_A MCCFLIKE protein (BA_56 20.5 1.4E+02 0.0047 27.6 5.6 29 290-318 62-90 (331)
477 3n53_A Response regulator rece 20.4 1.1E+02 0.0036 23.2 4.3 39 101-139 37-84 (140)
478 2j48_A Two-component sensor ki 20.3 1.6E+02 0.0054 20.9 5.2 38 102-139 37-83 (119)
479 2pzm_A Putative nucleotide sug 20.3 78 0.0027 28.8 3.9 34 6-43 20-53 (330)
480 1gy8_A UDP-galactose 4-epimera 20.3 98 0.0033 28.9 4.7 35 5-43 1-36 (397)
481 1sb8_A WBPP; epimerase, 4-epim 20.3 97 0.0033 28.4 4.6 34 6-43 27-60 (352)
482 4e5v_A Putative THUA-like prot 20.3 1.2E+02 0.004 27.3 4.9 39 4-43 2-43 (281)
483 1oi4_A Hypothetical protein YH 20.3 2E+02 0.0067 23.8 6.2 38 6-44 23-60 (193)
484 2b4a_A BH3024; flavodoxin-like 20.3 1.4E+02 0.0048 22.4 5.0 38 101-138 50-95 (138)
485 2m1z_A LMO0427 protein; homolo 20.2 1E+02 0.0034 23.1 3.7 39 6-44 2-43 (106)
486 1fjh_A 3alpha-hydroxysteroid d 20.1 1.3E+02 0.0044 26.0 5.2 33 7-42 1-33 (257)
487 3fkq_A NTRC-like two-domain pr 20.0 1E+02 0.0036 28.8 4.8 39 5-43 141-181 (373)
488 1rw7_A YDR533CP; alpha-beta sa 20.0 1.9E+02 0.0064 25.0 6.2 39 6-44 3-52 (243)
489 2hbv_A 2-amino-3-carboxymucona 20.0 2.7E+02 0.0094 25.2 7.7 73 233-313 106-178 (334)
No 1
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=100.00 E-value=6.1e-65 Score=506.43 Aligned_cols=437 Identities=25% Similarity=0.329 Sum_probs=329.9
Q ss_pred CCCCCccEEEEecCCCccCHHHHHHHHHHHHhCC--CeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCcc
Q 011765 1 MADNSKLQIAMFPWLAFGHMIPWLELAKLIAQKG--HKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAE 78 (478)
Q Consensus 1 ~~~~~~~~il~~~~~~~gH~~p~l~La~~L~~rG--h~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~ 78 (478)
|++++++||+++|+|++||++|++.||+.|+++| +.|||++++.+...+........++++|+.+| ++++.+..
T Consensus 8 M~~~~~~hvv~~P~p~~GHi~P~l~Lak~L~~~g~~~~vT~~~t~~~~~~~~~~~~~~~~~i~~~~ip----dglp~~~~ 83 (454)
T 3hbf_A 8 MNGNNLLHVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNEFLPNIKYYNVH----DGLPKGYV 83 (454)
T ss_dssp ----CCCEEEEECCCSSSSHHHHHHHHHHHHHHCTTSEEEEEECHHHHHHSCSSSSCCCTTEEEEECC----CCCCTTCC
T ss_pred ccCCCCCEEEEEcCCcccHHHHHHHHHHHHHhCCCCEEEEEEeCHHHHHhhhcccccCCCCceEEecC----CCCCCCcc
Confidence 7777789999999999999999999999999999 99999999866555433221113569999998 77877655
Q ss_pred ccCCCChhHHHHHHHHHhhhhHHHHHHHhh--cCCCEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHhhcccccccc
Q 011765 79 ATIDLPYDEVKYLKQSFDCLEEPMAKLLQS--LAPDWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFGPSSVLIN 156 (478)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~--~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~ 156 (478)
...+.......++......+.+.+.+++++ .++||||+|.+++|+..+|+++|||++.+|+++++.+..+.+...+.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~~~~~~~~ 163 (454)
T 3hbf_A 84 SSGNPREPIFLFIKAMQENFKHVIDEAVAETGKNITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIRE 163 (454)
T ss_dssp CCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEETTCTTHHHHHHHTTCEEEEEECSCHHHHHHHHTHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEECCcchHHHHHHHHhCCCEEEEeCccHHHHHHHHhhHHHHh
Confidence 444322222333444434466666666554 368999999999999999999999999999999999887776543322
Q ss_pred ccCCCCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHh
Q 011765 157 DSGDHLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQ 236 (478)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~ 236 (478)
....... ....+..++|+.. .++...++.+... ...........+..+...+++++++||+++||++.++.+++
T Consensus 164 ~~~~~~~---~~~~~~~~iPg~p--~~~~~dlp~~~~~-~~~~~~~~~~~~~~~~~~~~~~vl~ns~~eLE~~~~~~~~~ 237 (454)
T 3hbf_A 164 KTGSKEV---HDVKSIDVLPGFP--ELKASDLPEGVIK-DIDVPFATMLHKMGLELPRANAVAINSFATIHPLIENELNS 237 (454)
T ss_dssp TCCHHHH---TTSSCBCCSTTSC--CBCGGGSCTTSSS-CTTSHHHHHHHHHHHHGGGSSCEEESSCGGGCHHHHHHHHT
T ss_pred hcCCCcc---ccccccccCCCCC--CcChhhCchhhcc-CCchHHHHHHHHHHHhhccCCEEEECChhHhCHHHHHHHHh
Confidence 2000000 0011122344321 1222222222211 11111234455566667789999999999999999998887
Q ss_pred hcCCCeeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecC
Q 011765 237 LHRKPVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKR 316 (478)
Q Consensus 237 ~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 316 (478)
.+ +++++|||+....... ....++++.+||+..+++++|||||||....+.+++.+++.+|+.++++|||+++..
T Consensus 238 ~~-~~v~~vGPl~~~~~~~----~~~~~~~~~~wLd~~~~~~vVyvsfGS~~~~~~~~~~el~~~l~~~~~~flw~~~~~ 312 (454)
T 3hbf_A 238 KF-KLLLNVGPFNLTTPQR----KVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGD 312 (454)
T ss_dssp TS-SCEEECCCHHHHSCCS----CCCCTTCHHHHHHTSCTTCEEEEECCSSCCCCHHHHHHHHHHHHHHCCCEEEECCSC
T ss_pred cC-CCEEEECCcccccccc----cccchHHHHHHHhcCCCCceEEEecCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Confidence 76 5799999998543211 023356799999999889999999999998889999999999999999999999753
Q ss_pred CCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhhHHHHHh
Q 011765 317 LGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLE 396 (478)
Q Consensus 317 ~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~ 396 (478)
....+|+++.++.. +|+++++|+||.++|+|+++++|||||||||++||+++|||+|++|++.||+.||++++
T Consensus 313 ------~~~~lp~~~~~~~~-~~~~vv~w~Pq~~vL~h~~v~~fvtH~G~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~ 385 (454)
T 3hbf_A 313 ------PKEKLPKGFLERTK-TKGKIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTE 385 (454)
T ss_dssp ------HHHHSCTTHHHHTT-TTEEEESSCCHHHHHHSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHH
T ss_pred ------chhcCCHhHHhhcC-CceEEEeeCCHHHHHhhcCcCeEEecCCcchHHHHHHcCCCEecCcccccHHHHHHHHH
Confidence 23457888876654 57777799999999999999999999999999999999999999999999999999999
Q ss_pred hc-CeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhc----ccCChHHHHHHHHHHHH
Q 011765 397 EK-QIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFG----DKGRHDRYVDNFLNYLK 463 (478)
Q Consensus 397 ~~-g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~i~~~~~ 463 (478)
+. |+|+.++... +++++|+++|+++|++++.++||+||+++++.++ ++|++.++++.+++.+.
T Consensus 386 ~~~g~Gv~l~~~~----~~~~~l~~av~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~~v~~i~ 453 (454)
T 3hbf_A 386 SVLEIGVGVDNGV----LTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLIQIVT 453 (454)
T ss_dssp TTSCSEEECGGGS----CCHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHTSTTSHHHHHHHHHHHHHT
T ss_pred HhhCeeEEecCCC----CCHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHh
Confidence 95 9999998776 9999999999999994334489999999999975 56677899999998763
No 2
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=100.00 E-value=9.4e-60 Score=477.02 Aligned_cols=444 Identities=28% Similarity=0.383 Sum_probs=312.4
Q ss_pred CCCCCccEEEEecCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCCc--cccCCCCCCCCCCCeEEEEecCCCCCCCCCCc
Q 011765 1 MADNSKLQIAMFPWLAFGHMIPWLELAKLIAQK-GHKIFFISTPRN--IDRLPRLPQNLASMIQFVKISLPHVDNLRENA 77 (478)
Q Consensus 1 ~~~~~~~~il~~~~~~~gH~~p~l~La~~L~~r-Gh~Vt~~~~~~~--~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~ 77 (478)
|+.++++||+++|+|++||++|++.||++|++| ||+|||++++.. ...+.........+++|+.+|... ++..
T Consensus 1 M~~~~~~~vl~~p~p~~GHv~P~l~La~~L~~r~Gh~Vt~~t~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~---~~~~- 76 (480)
T 2vch_A 1 MEESKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPSSISSVFLPPVD---LTDL- 76 (480)
T ss_dssp -----CCEEEEECCSCHHHHHHHHHHHHHHHHHHCCEEEEEECCSSSCC-CHHHHHC-CCTTEEEEECCCCC---CTTS-
T ss_pred CCCCCCcEEEEecCcchhHHHHHHHHHHHHHhCCCCEEEEEECCCcchhhhhhhhccccCCCceEEEcCCCC---CCCC-
Confidence 888888999999999999999999999999998 999999999873 333332100001459999998421 1111
Q ss_pred cccCCCChhHHHHHHHHHhhhhHHHHHHHhh----cCC-CEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHhhcccc
Q 011765 78 EATIDLPYDEVKYLKQSFDCLEEPMAKLLQS----LAP-DWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFGPSS 152 (478)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~----~~p-D~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~ 152 (478)
. . .......+......+.+.+.+++++ .++ |+||+|.+..|+..+|+++|||++.++++++.....+.+..
T Consensus 77 ~---~-~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~pd~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~ 152 (480)
T 2vch_A 77 S---S-STRIESRISLTVTRSNPELRKVFDSFVEGGRLPTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLP 152 (480)
T ss_dssp C---T-TCCHHHHHHHHHHTTHHHHHHHHHHHHHTTCCCSEEEECTTCGGGHHHHHHTTCCEEEEECSCHHHHHHHHHHH
T ss_pred C---C-chhHHHHHHHHHHhhhHHHHHHHHHhccCCCCCeEEEECCcchhHHHHHHHcCCCEEEEECccHHHHHHHHHHH
Confidence 1 1 1122233334445566677777766 378 99999999999999999999999999999987666544322
Q ss_pred ccccccCCCCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHH
Q 011765 153 VLINDSGDHLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLK 232 (478)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~ 232 (478)
.+.+....+..........+.+.|.. ...+.... .......+.........+++++++++|++.++|++...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~Pg~~p~~------~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~nt~~ele~~~~~ 224 (480)
T 2vch_A 153 KLDETVSCEFRELTEPLMLPGCVPVA------GKDFLDPA--QDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIK 224 (480)
T ss_dssp HHHHHCCSCGGGCSSCBCCTTCCCBC------GGGSCGGG--SCTTSHHHHHHHHHHHHGGGCSEEEESCCTTTSHHHHH
T ss_pred HHHhcCCCcccccCCcccCCCCCCCC------hHHCchhh--hcCCchHHHHHHHHHHhcccCCEEEEcCHHHHhHHHHH
Confidence 11111000000000001111111111 11111100 01111122222233344556788999999999998777
Q ss_pred HHHhhc--CCCeeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEE
Q 011765 233 LLEQLH--RKPVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFF 310 (478)
Q Consensus 233 ~~~~~~--~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i 310 (478)
.+.+.. .+++++|||+........ ....++++.+||+..+++++|||||||....+.+++.+++++|+.++++||
T Consensus 225 ~l~~~~~~~~~v~~vGpl~~~~~~~~---~~~~~~~~~~wLd~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~l 301 (480)
T 2vch_A 225 ALQEPGLDKPPVYPVGPLVNIGKQEA---KQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFL 301 (480)
T ss_dssp HHHSCCTTCCCEEECCCCCCCSCSCC--------CHHHHHHHTSCTTCEEEEECTTTCCCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHhcccCCCcEEEEecccccccccc---CccchhHHHHHhcCCCCCceEEEecccccCCCHHHHHHHHHHHHhcCCcEE
Confidence 765421 257999999986432100 022456799999998888999999999998888999999999999999999
Q ss_pred EEEecCCCCC---------CCC-CCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEe
Q 011765 311 WVLKKRLGQA---------DTE-PIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLI 380 (478)
Q Consensus 311 ~~~~~~~~~~---------~~~-~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l 380 (478)
|+++...... +.. ...+|+++.++.+..++++.+|+||.+||+|+++++|||||||||++||+++|||||
T Consensus 302 w~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~Pq~~vL~h~~v~~fvtHgG~~S~~Eal~~GvP~i 381 (480)
T 2vch_A 302 WVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLI 381 (480)
T ss_dssp EEECCCCSSTTTTTTCC--CSCGGGGSCTTHHHHTTTTEEEEESCCCHHHHHHSTTEEEEEECCCHHHHHHHHHHTCCEE
T ss_pred EEECCccccccccccccccccchhhhcCHHHHHHhCCCeEEEeCccCHHHHhCCCCcCeEEecccchhHHHHHHcCCCEE
Confidence 9998643100 001 135899998888888888877999999999999999999999999999999999999
Q ss_pred ccccccchhhHHHHH-hhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcc---cCC-hHHHH
Q 011765 381 VLTCYADQGLNAKLL-EEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGD---KGR-HDRYV 455 (478)
Q Consensus 381 ~~P~~~DQ~~na~~v-~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~---~~~-~~~~~ 455 (478)
++|++.||+.||+++ +++|+|+.++..+ ++.+++++|+++|+++|+++++++||+||+++++.+++ .+| +.+++
T Consensus 382 ~~P~~~DQ~~na~~l~~~~G~g~~l~~~~-~~~~~~~~l~~av~~vl~~~~~~~~r~~a~~l~~~~~~a~~~gGss~~~~ 460 (480)
T 2vch_A 382 AWPLYAEQKMNAVLLSEDIRAALRPRAGD-DGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTKAL 460 (480)
T ss_dssp ECCCSTTHHHHHHHHHHTTCCEECCCCCT-TSCCCHHHHHHHHHHHHTSTHHHHHHHHHHHHHHHHHHHTSTTSHHHHHH
T ss_pred eccccccchHHHHHHHHHhCeEEEeeccc-CCccCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 999999999999997 7899999997651 22389999999999999877678999999999999875 555 47889
Q ss_pred HHHHHHHHh
Q 011765 456 DNFLNYLKN 464 (478)
Q Consensus 456 ~~i~~~~~~ 464 (478)
+.|++.+++
T Consensus 461 ~~~v~~~~~ 469 (480)
T 2vch_A 461 SLVALKWKA 469 (480)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998865
No 3
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=100.00 E-value=1e-59 Score=478.38 Aligned_cols=448 Identities=23% Similarity=0.368 Sum_probs=310.0
Q ss_pred CCC--CCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCC--C--CCCeEEEEecCCCCCCCC
Q 011765 1 MAD--NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQN--L--ASMIQFVKISLPHVDNLR 74 (478)
Q Consensus 1 ~~~--~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~--~--~~~i~~~~i~~~~~~~l~ 74 (478)
|+. .+++||+++|+|++||++|++.||++|++|||+|||++++.+...+.+.... . .++++|+.+| ++++
T Consensus 1 ~~~~~~~~~~vl~~p~p~~GHi~P~l~La~~L~~rG~~VT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~----~~lp 76 (482)
T 2pq6_A 1 MGNFANRKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFESIP----DGLT 76 (482)
T ss_dssp -------CCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHC------------CEEEEEEC----CCCC
T ss_pred CCcccCCCCEEEEecCccchhHHHHHHHHHHHHhCCCeEEEEeCCchhhhhccccccccccCCCceEEEECC----CCCC
Confidence 555 3468999999999999999999999999999999999999876654432100 0 1359999998 4555
Q ss_pred CCccccCCCChhHHHHHHHHHhhhhHHHHHHHhh-------cCCCEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHh
Q 011765 75 ENAEATIDLPYDEVKYLKQSFDCLEEPMAKLLQS-------LAPDWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGY 147 (478)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~-------~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~ 147 (478)
...... +.......++......+.+.+.+++++ .+|||||+|.+++|+..+|+++|||++.++++++.....
T Consensus 77 ~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~ 155 (482)
T 2pq6_A 77 PMEGDG-DVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLN 155 (482)
T ss_dssp ----------CCHHHHHHHHTTSSHHHHHHHHHHHHTCSSSCCCCEEEEETTCTHHHHHHHHTTCCEEEEECSCHHHHHH
T ss_pred Cccccc-CcchhHHHHHHHHHHHhhHHHHHHHHHHhhhccCCCceEEEECCcchhHHHHHHHcCCCEEEEecccHHHHHH
Confidence 411000 111122233333334455666666653 479999999999999999999999999999999877665
Q ss_pred hccccccccccCCCCCCCC----c-ccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcC
Q 011765 148 FGPSSVLINDSGDHLKTPE----D-YTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRS 222 (478)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns 222 (478)
+.+.......++.|..... . ......++|... .++...+..+..................+...+++++++|+
T Consensus 156 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~nt 233 (482)
T 2pq6_A 156 VMHFRSFVERGIIPFKDESYLTNGCLETKVDWIPGLK--NFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNT 233 (482)
T ss_dssp HTTHHHHHHTTCSSCSSGGGGTSSGGGCBCCSSTTCC--SCBGGGSCGGGCCSCTTCHHHHHHHHHHHTCCTTCCEEESS
T ss_pred HHHHHHHHhcCCCCCccccccccccccCccccCCCCC--CCchHHCchhhccCCcccHHHHHHHHHHHhhccCCEEEEcC
Confidence 4432211111122211000 0 001111222110 01111111111000001111122334455667889999999
Q ss_pred cCccChHHHHHHHhhcCCCeeeeccCCCC-CCCCC-----C--CCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHH
Q 011765 223 CMEFEPEWLKLLEQLHRKPVIPVGQLPTT-TGDGD-----S--DAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEE 294 (478)
Q Consensus 223 ~~~le~~~~~~~~~~~~~~~~~vGp~~~~-~~~~~-----~--~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~ 294 (478)
+++||++.++.+++.+ +++++|||+... ..... . ..-.+.+.++.+||+..+++++|||||||....+.++
T Consensus 234 ~~~le~~~~~~~~~~~-~~v~~VGPl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~wld~~~~~~vv~vs~GS~~~~~~~~ 312 (482)
T 2pq6_A 234 FNELESDVINALSSTI-PSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGSTTVMTPEQ 312 (482)
T ss_dssp CGGGGHHHHHHHHTTC-TTEEECCCHHHHHHTSTTGGGGCC---------CHHHHHHTTSCTTCEEEEECCSSSCCCHHH
T ss_pred hHHHhHHHHHHHHHhC-CcEEEEcCCcccccccccccccccccccccccchHHHHHHhcCCCCceEEEecCCcccCCHHH
Confidence 9999999999888877 689999999752 11100 0 0001234568999999888899999999998878888
Q ss_pred HHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHH
Q 011765 295 LTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQ 374 (478)
Q Consensus 295 ~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~ 374 (478)
+.+++++|+.++++|+|+++..... .....+|+++.++. .+|+++++|+||.++|+|+++++|||||||||++||++
T Consensus 313 ~~~~~~~l~~~~~~~l~~~~~~~~~--~~~~~l~~~~~~~~-~~~~~v~~~~pq~~~L~h~~~~~~vth~G~~s~~Eal~ 389 (482)
T 2pq6_A 313 LLEFAWGLANCKKSFLWIIRPDLVI--GGSVIFSSEFTNEI-ADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESIC 389 (482)
T ss_dssp HHHHHHHHHHTTCEEEEECCGGGST--TTGGGSCHHHHHHH-TTTEEEESCCCHHHHHTSTTEEEEEECCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEEEEcCCccc--cccccCcHhHHHhc-CCCEEEEeecCHHHHhcCCCCCEEEecCCcchHHHHHH
Confidence 9999999999999999999753210 01123788777665 45888889999999999999999999999999999999
Q ss_pred hCCcEeccccccchhhHHHHHh-hcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcc----cC
Q 011765 375 FGMPLIVLTCYADQGLNAKLLE-EKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGD----KG 449 (478)
Q Consensus 375 ~GvP~l~~P~~~DQ~~na~~v~-~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~----~~ 449 (478)
+|||+|++|++.||+.||++++ ++|+|+.++ .+ +++++|+++|+++|++++.++||+||+++++.+++ +|
T Consensus 390 ~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~-~~----~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gG 464 (482)
T 2pq6_A 390 AGVPMLCWPFFADQPTDCRFICNEWEIGMEID-TN----VKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGG 464 (482)
T ss_dssp HTCCEEECCCSTTHHHHHHHHHHTSCCEEECC-SS----CCHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHTSTTC
T ss_pred cCCCEEecCcccchHHHHHHHHHHhCEEEEEC-CC----CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999997 789999998 55 89999999999999932222799999999999874 46
Q ss_pred ChHHHHHHHHHHHHh
Q 011765 450 RHDRYVDNFLNYLKN 464 (478)
Q Consensus 450 ~~~~~~~~i~~~~~~ 464 (478)
++.++++.|++.+.+
T Consensus 465 ss~~~l~~~v~~~~~ 479 (482)
T 2pq6_A 465 CSYMNLNKVIKDVLL 479 (482)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHh
Confidence 678999999998743
No 4
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=100.00 E-value=4.3e-57 Score=454.66 Aligned_cols=439 Identities=22% Similarity=0.349 Sum_probs=303.9
Q ss_pred CCC-CCccEEEEecCCCccCHHHHHHHHHHHHhCCC--eEEEEeCCCccccCCCCCC-CCCCCeEEEEecCCCCCCCCCC
Q 011765 1 MAD-NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGH--KIFFISTPRNIDRLPRLPQ-NLASMIQFVKISLPHVDNLREN 76 (478)
Q Consensus 1 ~~~-~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh--~Vt~~~~~~~~~~~~~~g~-~~~~~i~~~~i~~~~~~~l~~~ 76 (478)
|.. .+++||+++|+|++||++|++.||+.|++||| .|||++++.....+..... ...++++|+.++ ++++.+
T Consensus 1 m~~~~~~~hvv~~p~p~~GHi~P~l~la~~L~~rGh~v~vt~~~t~~~~~~~~~~~~~~~~~~i~~~~i~----~glp~~ 76 (456)
T 2c1x_A 1 MSQTTTNPHVAVLAFPFSTHAAPLLAVVRRLAAAAPHAVFSFFSTSQSNASIFHDSMHTMQCNIKSYDIS----DGVPEG 76 (456)
T ss_dssp ------CCEEEEECCCSSSSHHHHHHHHHHHHHHCTTSEEEEEECHHHHHHHC-------CTTEEEEECC----CCCCTT
T ss_pred CCCCCCCCEEEEEcCcccchHHHHHHHHHHHHhCCCCeEEEEEeCchhHHHhhccccccCCCceEEEeCC----CCCCCc
Confidence 554 34689999999999999999999999999965 4688888654333222110 001459999987 556554
Q ss_pred ccccCCCChhHHHHHHHHH-hhhhHHHHHHHhh--cCCCEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHhhccccc
Q 011765 77 AEATIDLPYDEVKYLKQSF-DCLEEPMAKLLQS--LAPDWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFGPSSV 153 (478)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ll~~--~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~ 153 (478)
.... .........+.... ..+.+.+.+++++ .+||+||+|.++.|+..+|+++|||+|.++++++..+..+.+...
T Consensus 77 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~ 155 (456)
T 2c1x_A 77 YVFA-GRPQEDIELFTRAAPESFRQGMVMAVAETGRPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDE 155 (456)
T ss_dssp CCCC-CCTTHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTSTTHHHHHHHHTCEEEEEECSCHHHHHHHHTHHH
T ss_pred cccc-CChHHHHHHHHHHhHHHHHHHHHHHHhccCCCceEEEECCchHhHHHHHHHhCCCEEEEeCccHHHHHHHhhhHH
Confidence 3211 12223333333222 2244444444433 589999999999999999999999999999998876654433221
Q ss_pred cccccCCCCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccc-hhhhhhhccccCCcEEEEcCcCccChHHHH
Q 011765 154 LINDSGDHLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNV-SHGYRFGQSLKGCDIVAVRSCMEFEPEWLK 232 (478)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~ns~~~le~~~~~ 232 (478)
+......+.. .........++|.... ++...+..... .......+ ....+..+...+++++++|++++||++.++
T Consensus 156 ~~~~~~~~~~-~~~~~~~~~~~pg~~~--~~~~~lp~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vl~ns~~~le~~~~~ 231 (456)
T 2c1x_A 156 IREKIGVSGI-QGREDELLNFIPGMSK--VRFRDLQEGIV-FGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTN 231 (456)
T ss_dssp HHHHHCSSCC-TTCTTCBCTTSTTCTT--CBGGGSCTTTS-SSCTTSHHHHHHHHHHHHGGGSSCEEESSCGGGCHHHHH
T ss_pred HHhccCCccc-ccccccccccCCCCCc--ccHHhCchhhc-CCCcccHHHHHHHHHHHhhhhCCEEEECChHHHhHHHHH
Confidence 1111011100 0000111112232111 11111111000 00001111 222333344567899999999999999888
Q ss_pred HHHhhcCCCeeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEE
Q 011765 233 LLEQLHRKPVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWV 312 (478)
Q Consensus 233 ~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~ 312 (478)
.+++.+ +++++|||+....... ....+.++.+||+..+++++|||||||....+.+++.+++++|+.++.+|+|+
T Consensus 232 ~~~~~~-~~~~~vGpl~~~~~~~----~~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~~~~~lw~ 306 (456)
T 2c1x_A 232 DLKSKL-KTYLNIGPFNLITPPP----VVPNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWS 306 (456)
T ss_dssp HHHHHS-SCEEECCCHHHHC-------------CHHHHHHTSCTTCEEEEECCSSCCCCHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHhcC-CCEEEecCcccCcccc----cccchhhHHHHHhcCCCcceEEEecCccccCCHHHHHHHHHHHHhcCCeEEEE
Confidence 888877 5799999997543210 01223568999999888899999999999878889999999999999999999
Q ss_pred EecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhhHH
Q 011765 313 LKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNA 392 (478)
Q Consensus 313 ~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na 392 (478)
++.. ....+|+++.++. .+|+++.+|+||.++|+|+++++|||||||||++||+++|||+|++|++.||+.||
T Consensus 307 ~~~~------~~~~l~~~~~~~~-~~~~~v~~w~pq~~vL~h~~~~~fvth~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na 379 (456)
T 2c1x_A 307 LRDK------ARVHLPEGFLEKT-RGYGMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNG 379 (456)
T ss_dssp CCGG------GGGGSCTTHHHHH-TTTEEEESCCCHHHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHH
T ss_pred ECCc------chhhCCHHHHhhc-CCceEEecCCCHHHHhcCCcCCEEEecCCcchHHHHHHhCceEEecCChhhHHHHH
Confidence 9754 2345777776554 35788889999999999999999999999999999999999999999999999999
Q ss_pred HHHhhc-CeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhc----ccCChHHHHHHHHHHHHh
Q 011765 393 KLLEEK-QIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFG----DKGRHDRYVDNFLNYLKN 464 (478)
Q Consensus 393 ~~v~~~-g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~i~~~~~~ 464 (478)
+++++. |+|+.++... +++++|+++|+++|++++.++||+||+++++.++ ++|++.++++.|++.+.+
T Consensus 380 ~~l~~~~g~g~~l~~~~----~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~~v~~~~~ 452 (456)
T 2c1x_A 380 RMVEDVLEIGVRIEGGV----FTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLVDLVSK 452 (456)
T ss_dssp HHHHHTSCCEEECGGGS----CCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHTS
T ss_pred HHHHHHhCeEEEecCCC----cCHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHh
Confidence 999999 9999998776 8999999999999993222489999999999986 456678999999998853
No 5
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=100.00 E-value=4.3e-56 Score=448.54 Aligned_cols=432 Identities=21% Similarity=0.313 Sum_probs=304.9
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCcccc-----CCCCCCCCCCCeEEEEecCCCCCCCCCCc
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQK--GHKIFFISTPRNIDR-----LPRLPQNLASMIQFVKISLPHVDNLRENA 77 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~-----~~~~g~~~~~~i~~~~i~~~~~~~l~~~~ 77 (478)
+++||+++|+|++||++|++.||+.|++| ||+|||++++.+.+. +.... ...++++|+.+|.. .++..
T Consensus 8 ~~~~vv~~p~p~~GHi~P~l~La~~L~~r~pG~~Vt~v~t~~~~~~~~~~~~~~~~-~~~~~i~~~~lp~~---~~~~~- 82 (463)
T 2acv_A 8 KNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVL-ASQPQIQLIDLPEV---EPPPQ- 82 (463)
T ss_dssp HCEEEEEECCSSTTTHHHHHHHHHHHHHTCTTEEEEEEECCCTTCCCCHHHHHHHH-CSCTTEEEEECCCC---CCCCG-
T ss_pred CCCEEEEEcCcccchHHHHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhhhhhhcc-cCCCCceEEECCCC---CCCcc-
Confidence 46899999999999999999999999999 999999999876321 11100 01135999999832 13221
Q ss_pred cccCCCChhHHHHHHHHHhhhhHHHHHHHhh---cCCCEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHhhcccccc
Q 011765 78 EATIDLPYDEVKYLKQSFDCLEEPMAKLLQS---LAPDWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFGPSSVL 154 (478)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~---~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~ 154 (478)
..... .... +........+.+.+++++ .+||+||+|.++.|+..+|+++|||++.++++++..+..+.+...+
T Consensus 83 ~~~~~--~~~~--~~~~~~~~~~~~~~ll~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~ 158 (463)
T 2acv_A 83 ELLKS--PEFY--ILTFLESLIPHVKATIKTILSNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNR 158 (463)
T ss_dssp GGGGS--HHHH--HHHHHHHTHHHHHHHHHHHCCTTEEEEEEEGGGGGGHHHHHHTTCCEEEEESSCHHHHHHHHHGGGS
T ss_pred cccCC--ccHH--HHHHHHhhhHHHHHHHHhccCCCCeEEEECCcchhHHHHHHHcCCCEEEEeCchHHHHHHHHHHHhh
Confidence 10111 1111 334445556677788776 6899999999999999999999999999999988877655433211
Q ss_pred ccccCCCCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHH
Q 011765 155 INDSGDHLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLL 234 (478)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~ 234 (478)
... . +............+|... ..+....+.... ... ...+.........+++++++++|++++||++..+.+
T Consensus 159 ~~~--~-~~~~~~~~~~~~~~pg~~-~~~~~~~l~~~~--~~~-~~~~~~~~~~~~~~~~~~~~l~nt~~ele~~~~~~l 231 (463)
T 2acv_A 159 QIE--E-VFDDSDRDHQLLNIPGIS-NQVPSNVLPDAC--FNK-DGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDAL 231 (463)
T ss_dssp CTT--C-CCCCSSGGGCEECCTTCS-SCEEGGGSCHHH--HCT-TTHHHHHHHHHHHHTTSSEEEESCCHHHHHHHHHHH
T ss_pred ccc--C-CCCCccccCceeECCCCC-CCCChHHCchhh--cCC-chHHHHHHHHHHhcccCCEEEECCHHHHhHHHHHHH
Confidence 100 0 000000000001112110 001111111110 011 112222223334456788899999999999887777
Q ss_pred Hhhc--CCCeeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCccc-CCCHHHHHHHHHHHHhCCCCEEE
Q 011765 235 EQLH--RKPVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEA-KPSQEELTEIALGLELSKLPFFW 311 (478)
Q Consensus 235 ~~~~--~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~-~~~~~~~~~~~~al~~~~~~~i~ 311 (478)
.+.. ++++++|||+...............++++.+||+..+++++|||||||.. ..+.+++.+++++|+..+++|||
T Consensus 232 ~~~~~p~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~~~~~~~~~~~~~l~~~~~~~l~ 311 (463)
T 2acv_A 232 YDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW 311 (463)
T ss_dssp HHHCTTSCCEEECCCCCCSSCCCBTTBCHHHHHHHHHHHHTSCTTCEEEEECCSSCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HhccccCCcEEEeCCCcccccccccccccccchhHHHHHhcCCCCceEEEEeccccccCCHHHHHHHHHHHHhCCCcEEE
Confidence 6655 67899999998643200000001235689999999888899999999999 77888899999999999999999
Q ss_pred EEecCCCCCCCCCCCCChhhhhhcC-CCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhh
Q 011765 312 VLKKRLGQADTEPIELPDGFEERTR-GRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGL 390 (478)
Q Consensus 312 ~~~~~~~~~~~~~~~~p~~~~~~~~-~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~ 390 (478)
+++.+ ...+|+++.++.. .+++++++|+||.++|+|+++++|||||||||++||+++|||+|++|++.||+.
T Consensus 312 ~~~~~-------~~~l~~~~~~~~~~~~~~~v~~w~pq~~vL~h~~~~~fvth~G~~s~~Eal~~GvP~i~~P~~~dQ~~ 384 (463)
T 2acv_A 312 SNSAE-------KKVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQL 384 (463)
T ss_dssp ECCCC-------GGGSCTTHHHHHHHHCSEEEESSCCHHHHHHSTTEEEEEECCCHHHHHHHHHTTCCEEECCCSTTHHH
T ss_pred EECCC-------cccCChhHHHhhccCCCEEEEccCCHHHHhCCCccCeEEecCCchhHHHHHHcCCCeeeccchhhhHH
Confidence 98742 1246777665541 247778889999999999999999999999999999999999999999999999
Q ss_pred HHHHH-hhcCeEEEe-e---ccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcc----cCChHHHHHHHHHH
Q 011765 391 NAKLL-EEKQIVELI-P---RDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGD----KGRHDRYVDNFLNY 461 (478)
Q Consensus 391 na~~v-~~~g~G~~l-~---~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~i~~~ 461 (478)
||+++ +++|+|+.+ + .. ++.+++++|+++|+++|++ +++||+||+++++.+++ +|++.++++.|++.
T Consensus 385 Na~~lv~~~g~g~~l~~~~~~~--~~~~~~~~l~~ai~~ll~~--~~~~r~~a~~l~~~~~~a~~~gGss~~~l~~~v~~ 460 (463)
T 2acv_A 385 NAFRLVKEWGVGLGLRVDYRKG--SDVVAAEEIEKGLKDLMDK--DSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDD 460 (463)
T ss_dssp HHHHHHHTSCCEEESCSSCCTT--CCCCCHHHHHHHHHHHTCT--TCTHHHHHHHHHHHHHHHTSTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCeEEEEecccCCC--CccccHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 99995 899999999 3 22 0028999999999999962 47899999999998764 56678999999987
Q ss_pred HH
Q 011765 462 LK 463 (478)
Q Consensus 462 ~~ 463 (478)
++
T Consensus 461 ~~ 462 (463)
T 2acv_A 461 IT 462 (463)
T ss_dssp HH
T ss_pred hc
Confidence 73
No 6
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=100.00 E-value=8.5e-48 Score=386.07 Aligned_cols=403 Identities=18% Similarity=0.194 Sum_probs=282.4
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccc---cCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEA---TID 82 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~---~~~ 82 (478)
+|||+|+++++.||++|++.||++|+++||+|+|++++.+.+.+...| ++|++++ ..++..... ...
T Consensus 12 ~~~Il~~~~~~~GHv~p~l~la~~L~~~Gh~V~~~~~~~~~~~~~~~g------~~~~~~~----~~~~~~~~~~~~~~~ 81 (424)
T 2iya_A 12 PRHISFFNIPGHGHVNPSLGIVQELVARGHRVSYAITDEFAAQVKAAG------ATPVVYD----SILPKESNPEESWPE 81 (424)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHT------CEEEECC----CCSCCTTCTTCCCCS
T ss_pred cceEEEEeCCCCcccchHHHHHHHHHHCCCeEEEEeCHHHHHHHHhCC------CEEEecC----ccccccccchhhcch
Confidence 579999999999999999999999999999999999999887777767 8998887 333222111 011
Q ss_pred CChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHhhccccccccccCC--
Q 011765 83 LPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFGPSSVLINDSGD-- 160 (478)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~-- 160 (478)
.....+..+......+.+.+.+++++.+||+||+|.+..++..+|+.+|||++.+++.+.........+.. ...+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~d~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~-~~~~~~~~ 160 (424)
T 2iya_A 82 DQESAMGLFLDEAVRVLPQLEDAYADDRPDLIVYDIASWPAPVLGRKWDIPFVQLSPTFVAYEGFEEDVPA-VQDPTADR 160 (424)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTTTSCCSEEEEETTCTHHHHHHHHHTCCEEEEESSCCCCTTHHHHSGG-GSCCCC--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEcCcccHHHHHHHhcCCCEEEEeccccccccccccccc-cccccccc
Confidence 11122233333444556678888888999999999988889999999999999998766421111000000 000000
Q ss_pred --CCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHhhc
Q 011765 161 --HLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQLH 238 (478)
Q Consensus 161 --~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~ 238 (478)
+................ ...... ....+...+... ++. .........++.+++++.++++++ ...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~--g~~--~~~~~~~~~~~~~l~~~~~~l~~~-----~~~~ 228 (424)
T 2iya_A 161 GEEAAAPAGTGDAEEGAEA--EDGLVR-FFTRLSAFLEEH--GVD--TPATEFLIAPNRCIVALPRTFQIK-----GDTV 228 (424)
T ss_dssp ---------------------HHHHHH-HHHHHHHHHHHT--TCC--SCHHHHHHCCSSEEESSCTTTSTT-----GGGC
T ss_pred ccccccccccccchhhhcc--chhHHH-HHHHHHHHHHHc--CCC--CCHHHhccCCCcEEEEcchhhCCC-----ccCC
Confidence 00000000000000000 000000 001111111111 111 011112225678899999999875 2567
Q ss_pred CCCeeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCC
Q 011765 239 RKPVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLG 318 (478)
Q Consensus 239 ~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~ 318 (478)
++++++|||+..... +..+|++..+++++|||++||......+.+..++++++..+.+++|+++....
T Consensus 229 ~~~~~~vGp~~~~~~------------~~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~g~~~~ 296 (424)
T 2iya_A 229 GDNYTFVGPTYGDRS------------HQGTWEGPGDGRPVLLIALGSAFTDHLDFYRTCLSAVDGLDWHVVLSVGRFVD 296 (424)
T ss_dssp CTTEEECCCCCCCCG------------GGCCCCCCCSSCCEEEEECCSSSCCCHHHHHHHHHHHTTCSSEEEEECCTTSC
T ss_pred CCCEEEeCCCCCCcc------------cCCCCCccCCCCCEEEEEcCCCCcchHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence 889999999764211 12357776666789999999998656788889999998888899888764321
Q ss_pred CCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhhHHHHHhhc
Q 011765 319 QADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEK 398 (478)
Q Consensus 319 ~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~ 398 (478)
. +....+| +|+.+.+|+||.++|+++++ ||||||+||++||+++|||+|++|...||+.||+++++.
T Consensus 297 ~--~~~~~~~---------~~v~~~~~~~~~~~l~~~d~--~v~~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~ 363 (424)
T 2iya_A 297 P--ADLGEVP---------PNVEVHQWVPQLDILTKASA--FITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVEL 363 (424)
T ss_dssp G--GGGCSCC---------TTEEEESSCCHHHHHTTCSE--EEECCCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHT
T ss_pred h--HHhccCC---------CCeEEecCCCHHHHHhhCCE--EEECCchhHHHHHHHcCCCEEEecCccchHHHHHHHHHC
Confidence 0 0011223 48999999999999999998 999999999999999999999999999999999999999
Q ss_pred CeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHH
Q 011765 399 QIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLK 463 (478)
Q Consensus 399 g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~ 463 (478)
|+|+.++..+ +++++|.++|+++++ |++++++++++++.+++.++..++++.|++.++
T Consensus 364 g~g~~~~~~~----~~~~~l~~~i~~ll~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 421 (424)
T 2iya_A 364 GLGRHIPRDQ----VTAEKLREAVLAVAS---DPGVAERLAAVRQEIREAGGARAAADILEGILA 421 (424)
T ss_dssp TSEEECCGGG----CCHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCEEEcCcCC----CCHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 9999998776 899999999999999 899999999999999999988999998888764
No 7
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=100.00 E-value=9.8e-47 Score=375.41 Aligned_cols=364 Identities=16% Similarity=0.126 Sum_probs=243.6
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCC---CCCCCcc---
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVD---NLRENAE--- 78 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~---~l~~~~~--- 78 (478)
+.|||||+++|++||++|++.||++|++|||+|||++++.+.+.. +.| +.+..+...... ..+....
T Consensus 21 ~~MRIL~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~t~~~~~~~~-~~g------~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (400)
T 4amg_A 21 QSMRALFITSPGLSHILPTVPLAQALRALGHEVRYATGGDIRAVA-EAG------LCAVDVSPGVNYAKLFVPDDTDVTD 93 (400)
T ss_dssp CCCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEECSSTHHHH-TTT------CEEEESSTTCCSHHHHSCCC-----
T ss_pred CCCeEEEECCCchhHHHHHHHHHHHHHHCCCEEEEEeCcchhhHH-hcC------CeeEecCCchhHhhhcccccccccc
Confidence 479999999999999999999999999999999999999887644 344 677766411000 0000000
Q ss_pred --ccCCCC-hhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHhhccccccc
Q 011765 79 --ATIDLP-YDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFGPSSVLI 155 (478)
Q Consensus 79 --~~~~~~-~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~ 155 (478)
...... ......+..........+.+++++++||+||+|.+.+++..+|+.+|||++.+..++......
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pD~Vv~d~~~~~~~~~A~~~gip~~~~~~~~~~~~~~-------- 165 (400)
T 4amg_A 94 PMHSEGLGEGFFAEMFARVSAVAVDGALRTARSWRPDLVVHTPTQGAGPLTAAALQLPCVELPLGPADSEPG-------- 165 (400)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEECTTCTHHHHHHHHTTCCEEECCSSTTTCCHH--------
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECcchHHHHHHHHHcCCCceeecccccccccc--------
Confidence 000111 111223333334455667788889999999999999999999999999999875533211100
Q ss_pred cccCCCCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhcccc-CCcEEEEcCcCccChHHHHHH
Q 011765 156 NDSGDHLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLK-GCDIVAVRSCMEFEPEWLKLL 234 (478)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ns~~~le~~~~~~~ 234 (478)
+.......+..... +...... .....+... ++.....
T Consensus 166 ---------------------------~~~~~~~~l~~~~~----------~~~~~~~~~~~~~~~~~-----~~~~~~~ 203 (400)
T 4amg_A 166 ---------------------------LGALIRRAMSKDYE----------RHGVTGEPTGSVRLTTT-----PPSVEAL 203 (400)
T ss_dssp ---------------------------HHHHHHHHTHHHHH----------HTTCCCCCSCEEEEECC-----CHHHHHT
T ss_pred ---------------------------hhhHHHHHHHHHHH----------HhCCCcccccchhhccc-----Cchhhcc
Confidence 00000000000000 0000011 111112111 1111110
Q ss_pred Hh-h-cCCCeeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCC--HHHHHHHHHHHHhCCCCEE
Q 011765 235 EQ-L-HRKPVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPS--QEELTEIALGLELSKLPFF 310 (478)
Q Consensus 235 ~~-~-~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~--~~~~~~~~~al~~~~~~~i 310 (478)
.. . ..+....+.+.... ....+.+|++..+++++||||+||....+ .+.+..++++++..+.+++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~~~~~~v 272 (400)
T 4amg_A 204 LPEDRRSPGAWPMRYVPYN-----------GGAVLPDWLPPAAGRRRIAVTLGSIDALSGGIAKLAPLFSEVADVDAEFV 272 (400)
T ss_dssp SCGGGCCTTCEECCCCCCC-----------CCEECCTTCSCCTTCCEEEECCCSCC--CCSSSTTHHHHHHGGGSSSEEE
T ss_pred CcccccCCcccCccccccc-----------ccccCcccccccCCCcEEEEeCCcccccCccHHHHHHHHHHhhccCceEE
Confidence 00 0 11112222222211 12234568888888999999999987643 3678889999999999999
Q ss_pred EEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhh
Q 011765 311 WVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGL 390 (478)
Q Consensus 311 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~ 390 (478)
|..++.... ....+|+ |+++.+|+||.++|+|+++ ||||||+||++||+++|||+|++|++.||+.
T Consensus 273 ~~~~~~~~~---~~~~~~~---------~v~~~~~~p~~~lL~~~~~--~v~h~G~~s~~Eal~~GvP~v~~P~~~dQ~~ 338 (400)
T 4amg_A 273 LTLGGGDLA---LLGELPA---------NVRVVEWIPLGALLETCDA--IIHHGGSGTLLTALAAGVPQCVIPHGSYQDT 338 (400)
T ss_dssp EECCTTCCC---CCCCCCT---------TEEEECCCCHHHHHTTCSE--EEECCCHHHHHHHHHHTCCEEECCC---CHH
T ss_pred EEecCcccc---ccccCCC---------CEEEEeecCHHHHhhhhhh--eeccCCccHHHHHHHhCCCEEEecCcccHHH
Confidence 998765332 3344555 8999999999999999988 9999999999999999999999999999999
Q ss_pred HHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHH
Q 011765 391 NAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNY 461 (478)
Q Consensus 391 na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~ 461 (478)
||++++++|+|+.++..+ +++ ++|+++|+ |++||+||+++++.+++.++..++++.+++.
T Consensus 339 na~~v~~~G~g~~l~~~~----~~~----~al~~lL~---d~~~r~~a~~l~~~~~~~~~~~~~a~~le~l 398 (400)
T 4amg_A 339 NRDVLTGLGIGFDAEAGS----LGA----EQCRRLLD---DAGLREAALRVRQEMSEMPPPAETAAXLVAL 398 (400)
T ss_dssp HHHHHHHHTSEEECCTTT----CSH----HHHHHHHH---CHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEEcCCCC----chH----HHHHHHHc---CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 999999999999998776 665 46778999 8999999999999999999888888877764
No 8
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=100.00 E-value=1.2e-45 Score=369.13 Aligned_cols=385 Identities=12% Similarity=0.016 Sum_probs=264.8
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChh
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYD 86 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~ 86 (478)
|||+|++.++.||++|+++||++|++|||+|+|++++.+.+.+...| ++|+.++....+.+. ........
T Consensus 1 M~Il~~~~~~~GHv~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~g------~~~~~i~~~~~~~~~----~~~~~~~~ 70 (415)
T 1iir_A 1 MRVLLATCGSRGDTEPLVALAVRVRDLGADVRMCAPPDCAERLAEVG------VPHVPVGPSARAPIQ----RAKPLTAE 70 (415)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTT------CCEEECCC-----------CCSCCCHH
T ss_pred CeEEEEcCCCchhHHHHHHHHHHHHHCCCeEEEEcCHHHHHHHHHcC------CeeeeCCCCHHHHhh----cccccchH
Confidence 79999999999999999999999999999999999999877676666 899988742211111 10111111
Q ss_pred HHHHHHHHHhh-hhHHHHHHHh-hcCCCEEEEcC-Cccc--HHHHHHHhCCCeEEEecchHHHHHhhccccccccccCCC
Q 011765 87 EVKYLKQSFDC-LEEPMAKLLQ-SLAPDWLLFDF-AAYW--LPARARELGIPSGFFSIFTAATLGYFGPSSVLINDSGDH 161 (478)
Q Consensus 87 ~~~~~~~~~~~-~~~~l~~ll~-~~~pD~vI~D~-~~~~--~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (478)
.+...+.. ....+.++.+ ..+||+||+|. +..+ +..+|+++|||++.++++++.....+.++
T Consensus 71 ---~~~~~~~~~~~~~~~~l~~~~~~pD~vi~d~~~~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~p~---------- 137 (415)
T 1iir_A 71 ---DVRRFTTEAIATQFDEIPAAAEGCAAVVTTGLLAAAIGVRSVAEKLGIPYFYAFHCPSYVPSPYYPP---------- 137 (415)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHTTTCSEEEEESCHHHHHHHHHHHHHHTCCEEEEESSGGGSCCSSSCC----------
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhcCCCEEEECChhHhHhhHHHHHHHhCCCEEEEecCCCcCCCcccCC----------
Confidence 11122221 2233444443 57999999997 6777 88999999999999987664321111100
Q ss_pred CCCCCcccCCCcccccc--cccccch-hh-------hhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccCh-HH
Q 011765 162 LKTPEDYTRVPNWVSFP--TTISYRL-FE-------ARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEP-EW 230 (478)
Q Consensus 162 ~~~~~~~~~~~~~~p~~--~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~-~~ 230 (478)
... +. .+|.. .+..... .. ...+......+ ++.....+.+..... .+++|+++++++ +
T Consensus 138 -~~~-----~~-~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~-~~l~~~~~~l~~~~- 206 (415)
T 1iir_A 138 -PPL-----GE-PSTQDTIDIPAQWERNNQSAYQRYGGLLNSHRDAI--GLPPVEDIFTFGYTD-HPWVAADPVLAPLQ- 206 (415)
T ss_dssp -CC---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCCCCCCHHHHHHCS-SCEECSCTTTSCCC-
T ss_pred -ccC-----Cc-cccchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHc--CCCCCCccccccCCC-CEEEeeChhhcCCC-
Confidence 000 00 00000 0000000 00 00000011111 111111122222233 689999999886 3
Q ss_pred HHHHHhhcCCCeeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEE
Q 011765 231 LKLLEQLHRKPVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFF 310 (478)
Q Consensus 231 ~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i 310 (478)
+..+ ++++|||+..... ...+.++.+|++.. +++|||++||.. ...+.+..++++++..+.+++
T Consensus 207 ----~~~~--~~~~vG~~~~~~~-------~~~~~~~~~~l~~~--~~~v~v~~Gs~~-~~~~~~~~~~~al~~~~~~~v 270 (415)
T 1iir_A 207 ----PTDL--DAVQTGAWILPDE-------RPLSPELAAFLDAG--PPPVYLGFGSLG-APADAVRVAIDAIRAHGRRVI 270 (415)
T ss_dssp ----CCSS--CCEECCCCCCCCC-------CCCCHHHHHHHHTS--SCCEEEECC----CCHHHHHHHHHHHHHTTCCEE
T ss_pred ----cccC--CeEeeCCCccCcc-------cCCCHHHHHHHhhC--CCeEEEeCCCCC-CcHHHHHHHHHHHHHCCCeEE
Confidence 2223 7999999876432 23456789999764 369999999987 567888889999999999999
Q ss_pred EEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhh
Q 011765 311 WVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGL 390 (478)
Q Consensus 311 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~ 390 (478)
|+++.... ....+| +|+.+.+|+||.++|+++++ ||||||+||++||+++|||+|++|...||+.
T Consensus 271 ~~~g~~~~----~~~~~~---------~~v~~~~~~~~~~~l~~~d~--~v~~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~ 335 (415)
T 1iir_A 271 LSRGWADL----VLPDDG---------ADCFAIGEVNHQVLFGRVAA--VIHHGGAGTTHVAARAGAPQILLPQMADQPY 335 (415)
T ss_dssp ECTTCTTC----CCSSCG---------GGEEECSSCCHHHHGGGSSE--EEECCCHHHHHHHHHHTCCEEECCCSTTHHH
T ss_pred EEeCCCcc----cccCCC---------CCEEEeCcCChHHHHhhCCE--EEeCCChhHHHHHHHcCCCEEECCCCCccHH
Confidence 98765421 112233 38999999999999977777 9999999999999999999999999999999
Q ss_pred HHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHh
Q 011765 391 NAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLKN 464 (478)
Q Consensus 391 na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~ 464 (478)
||+++++.|+|+.++..+ ++.++|.++|+++ + |++|+++++++++.++..++.+++++.|++.++.
T Consensus 336 na~~l~~~g~g~~~~~~~----~~~~~l~~~i~~l-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 401 (415)
T 1iir_A 336 YAGRVAELGVGVAHDGPI----PTFDSLSAALATA-L---TPETHARATAVAGTIRTDGAAVAARLLLDAVSRE 401 (415)
T ss_dssp HHHHHHHHTSEEECSSSS----CCHHHHHHHHHHH-T---SHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCcccCCcCC----CCHHHHHHHHHHH-c---CHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHhc
Confidence 999999999999998776 8999999999999 8 8999999999999999888888888877776653
No 9
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=100.00 E-value=8.9e-45 Score=363.08 Aligned_cols=383 Identities=13% Similarity=0.008 Sum_probs=264.7
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChh
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYD 86 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~ 86 (478)
|||+|++.++.||++|+++||++|+++||+|+|++++.+.+.+...| ++++.++....+.+.. . .......
T Consensus 1 MrIl~~~~~~~GH~~p~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~g------~~~~~~~~~~~~~~~~-~--~~~~~~~ 71 (416)
T 1rrv_A 1 MRVLLSVCGTRGDVEIGVALADRLKALGVQTRMCAPPAAEERLAEVG------VPHVPVGLPQHMMLQE-G--MPPPPPE 71 (416)
T ss_dssp CEEEEEEESCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHT------CCEEECSCCGGGCCCT-T--SCCCCHH
T ss_pred CeEEEEecCCCccHHHHHHHHHHHHHCCCeEEEEeCHHHHHHHHHcC------CeeeecCCCHHHHHhh-c--cccchhH
Confidence 79999999999999999999999999999999999998877777766 8899887321111111 0 0011110
Q ss_pred HHHHHHHHHhhhhHHHHHHHh--hcCCCEEEEcC-Cccc--HHHHHHHhCCCeEEEecchHHHHHhhccccccccccCCC
Q 011765 87 EVKYLKQSFDCLEEPMAKLLQ--SLAPDWLLFDF-AAYW--LPARARELGIPSGFFSIFTAATLGYFGPSSVLINDSGDH 161 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~ll~--~~~pD~vI~D~-~~~~--~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (478)
.+..........+.+.+. ..+||+||+|. +.++ +..+|+.+|||++.+++++......+.++
T Consensus 72 ---~~~~~~~~~~~~~~~~l~~~~~~pD~vi~d~~~~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~p~---------- 138 (416)
T 1rrv_A 72 ---EEQRLAAMTVEMQFDAVPGAAEGCAAVVAVGDLAAATGVRSVAEKLGLPFFYSVPSPVYLASPHLPP---------- 138 (416)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHTTTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSCCSSSCC----------
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHHcCCCEEEEeCCCCCCCCcccCC----------
Confidence 111111111122222222 56899999996 4556 78899999999999877653321100000
Q ss_pred CCCCCcccCCCccccc-cc---ccccch-hh-------hhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChH
Q 011765 162 LKTPEDYTRVPNWVSF-PT---TISYRL-FE-------ARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPE 229 (478)
Q Consensus 162 ~~~~~~~~~~~~~~p~-~~---~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~ 229 (478)
....+. +. +..... .. ...+......+ ++.....+.+..... .++++++++++++
T Consensus 139 ----------~~~~~~~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~-~~l~~~~~~l~~~ 205 (416)
T 1rrv_A 139 ----------AYDEPTTPGVTDIRVLWEERAARFADRYGPTLNRRRAEI--GLPPVEDVFGYGHGE-RPLLAADPVLAPL 205 (416)
T ss_dssp ----------CBCSCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCCCCSCHHHHTTCS-SCEECSCTTTSCC
T ss_pred ----------CCCCCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHc--CCCCCCchhhhccCC-CeEEccCccccCC
Confidence 000011 00 000000 00 00000111111 111111122223344 7899999998864
Q ss_pred HHHHHHhhcCCCeeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccC-CCHHHHHHHHHHHHhCCCC
Q 011765 230 WLKLLEQLHRKPVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAK-PSQEELTEIALGLELSKLP 308 (478)
Q Consensus 230 ~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~al~~~~~~ 308 (478)
+..+ ++++|||+..... ...+.++.+|++.. +++|||++||... ...+.+..++++++..+.+
T Consensus 206 -----~~~~--~~~~vG~~~~~~~-------~~~~~~~~~~l~~~--~~~v~v~~Gs~~~~~~~~~~~~~~~al~~~~~~ 269 (416)
T 1rrv_A 206 -----QPDV--DAVQTGAWLLSDE-------RPLPPELEAFLAAG--SPPVHIGFGSSSGRGIADAAKVAVEAIRAQGRR 269 (416)
T ss_dssp -----CSSC--CCEECCCCCCCCC-------CCCCHHHHHHHHSS--SCCEEECCTTCCSHHHHHHHHHHHHHHHHTTCC
T ss_pred -----CCCC--CeeeECCCccCcc-------CCCCHHHHHHHhcC--CCeEEEecCCCCccChHHHHHHHHHHHHHCCCe
Confidence 1222 6999999886532 23456788999765 3699999999874 3457788899999999999
Q ss_pred EEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccch
Q 011765 309 FFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQ 388 (478)
Q Consensus 309 ~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ 388 (478)
++|+++.... ....+| +|+.+.+|+||.++|+++++ ||||||+||++||+++|||+|++|++.||
T Consensus 270 ~v~~~g~~~~----~~~~~~---------~~v~~~~~~~~~~ll~~~d~--~v~~~G~~t~~Ea~~~G~P~i~~p~~~dQ 334 (416)
T 1rrv_A 270 VILSRGWTEL----VLPDDR---------DDCFAIDEVNFQALFRRVAA--VIHHGSAGTEHVATRAGVPQLVIPRNTDQ 334 (416)
T ss_dssp EEEECTTTTC----CCSCCC---------TTEEEESSCCHHHHGGGSSE--EEECCCHHHHHHHHHHTCCEEECCCSBTH
T ss_pred EEEEeCCccc----cccCCC---------CCEEEeccCChHHHhccCCE--EEecCChhHHHHHHHcCCCEEEccCCCCc
Confidence 9999875421 112233 38999999999999987777 99999999999999999999999999999
Q ss_pred hhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHH-HHHHHh
Q 011765 389 GLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNF-LNYLKN 464 (478)
Q Consensus 389 ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i-~~~~~~ 464 (478)
+.||+++++.|+|+.++..+ ++.++|.++|+++ + |++|+++++++++.+++.++. ++++.+ ++.++.
T Consensus 335 ~~na~~l~~~g~g~~~~~~~----~~~~~l~~~i~~l-~---~~~~~~~~~~~~~~~~~~~~~-~~~~~i~e~~~~~ 402 (416)
T 1rrv_A 335 PYFAGRVAALGIGVAHDGPT----PTFESLSAALTTV-L---APETRARAEAVAGMVLTDGAA-AAADLVLAAVGRE 402 (416)
T ss_dssp HHHHHHHHHHTSEEECSSSC----CCHHHHHHHHHHH-T---SHHHHHHHHHHTTTCCCCHHH-HHHHHHHHHHHC-
T ss_pred HHHHHHHHHCCCccCCCCCC----CCHHHHHHHHHHh-h---CHHHHHHHHHHHHHHhhcCcH-HHHHHHHHHHhcc
Confidence 99999999999999998776 8999999999999 8 899999999999999988888 888887 665543
No 10
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=100.00 E-value=3.7e-43 Score=351.42 Aligned_cols=390 Identities=16% Similarity=0.185 Sum_probs=277.8
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCcc---ccC
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAE---ATI 81 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~---~~~ 81 (478)
+||||+|++.++.||++|++.||++|+++||+|+|++++.+.+.+...| +.+..++. .++.... ...
T Consensus 19 ~m~rIl~~~~~~~GHv~p~l~La~~L~~~Gh~V~v~~~~~~~~~~~~~G------~~~~~~~~----~~~~~~~~~~~~~ 88 (415)
T 3rsc_A 19 HMAHLLIVNVASHGLILPTLTVVTELVRRGHRVSYVTAGGFAEPVRAAG------ATVVPYQS----EIIDADAAEVFGS 88 (415)
T ss_dssp CCCEEEEECCSCHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHHTT------CEEEECCC----STTTCCHHHHHHS
T ss_pred cCCEEEEEeCCCccccccHHHHHHHHHHCCCEEEEEeCHHHHHHHHhcC------CEEEeccc----cccccccchhhcc
Confidence 4799999999999999999999999999999999999999988888777 99998873 2221110 111
Q ss_pred CCChhHHHH-HHHHHhhhhHHHHHHHhhcCCCEEEEc-CCcccHHHHHHHhCCCeEEEecchHHHHHhhccccccccccC
Q 011765 82 DLPYDEVKY-LKQSFDCLEEPMAKLLQSLAPDWLLFD-FAAYWLPARARELGIPSGFFSIFTAATLGYFGPSSVLINDSG 159 (478)
Q Consensus 82 ~~~~~~~~~-~~~~~~~~~~~l~~ll~~~~pD~vI~D-~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (478)
......+.. +......+.+.+.+++++++||+||+| ...+++..+|+.+|||++.+.+...........+...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~PDlVi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~~~~~~~~~~----- 163 (415)
T 3rsc_A 89 DDLGVRPHLMYLRENVSVLRATAEALDGDVPDLVLYDDFPFIAGQLLAARWRRPAVRLSAAFASNEHYSFSQDMV----- 163 (415)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHSSSCCSEEEEESTTHHHHHHHHHHTTCCEEEEESSCCCCSSCCHHHHHH-----
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEECchhhhHHHHHHHHhCCCEEEEEecccccCccccccccc-----
Confidence 112122222 333344455678888999999999999 7777889999999999998865332110000000000
Q ss_pred CCCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccC-CcEEEEcCcCccChHHHHHHHhhc
Q 011765 160 DHLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKG-CDIVAVRSCMEFEPEWLKLLEQLH 238 (478)
Q Consensus 160 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ns~~~le~~~~~~~~~~~ 238 (478)
+..+...+. ........+......+ ++.. ........ .+..+.....++++. ...+
T Consensus 164 -----------~~~~~~~p~---~~~~~~~~~~~~~~~~--g~~~--~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~ 220 (415)
T 3rsc_A 164 -----------TLAGTIDPL---DLPVFRDTLRDLLAEH--GLSR--SVVDCWNHVEQLNLVFVPKAFQIA-----GDTF 220 (415)
T ss_dssp -----------HHHTCCCGG---GCHHHHHHHHHHHHHT--TCCC--CHHHHHTCCCSEEEESSCTTTSTT-----GGGC
T ss_pred -----------cccccCChh---hHHHHHHHHHHHHHHc--CCCC--ChhhhhcCCCCeEEEEcCcccCCC-----cccC
Confidence 000000000 0000001111111111 1110 00111122 266777776666644 4667
Q ss_pred CCCeeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCC
Q 011765 239 RKPVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLG 318 (478)
Q Consensus 239 ~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~ 318 (478)
+.++.++||+..... +..+|....+++++|||++||......+.+..++++++..+.+++|+++....
T Consensus 221 ~~~~~~vGp~~~~~~------------~~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~ 288 (415)
T 3rsc_A 221 DDRFVFVGPCFDDRR------------FLGEWTRPADDLPVVLVSLGTTFNDRPGFFRDCARAFDGQPWHVVMTLGGQVD 288 (415)
T ss_dssp CTTEEECCCCCCCCG------------GGCCCCCCSSCCCEEEEECTTTSCCCHHHHHHHHHHHTTSSCEEEEECTTTSC
T ss_pred CCceEEeCCCCCCcc------------cCcCccccCCCCCEEEEECCCCCCChHHHHHHHHHHHhcCCcEEEEEeCCCCC
Confidence 888999999864321 13346555567789999999998766788889999999888888888764311
Q ss_pred CCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhhHHHHHhhc
Q 011765 319 QADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEK 398 (478)
Q Consensus 319 ~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~ 398 (478)
. +....+ .+|+.+.+|+|+.++|+++++ ||||||+||+.||+++|+|+|++|...||+.||+++++.
T Consensus 289 ~--~~l~~~---------~~~v~~~~~~~~~~ll~~ad~--~v~~~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~~~ 355 (415)
T 3rsc_A 289 P--AALGDL---------PPNVEAHRWVPHVKVLEQATV--CVTHGGMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQL 355 (415)
T ss_dssp G--GGGCCC---------CTTEEEESCCCHHHHHHHEEE--EEESCCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHH
T ss_pred h--HHhcCC---------CCcEEEEecCCHHHHHhhCCE--EEECCcHHHHHHHHHhCCCEEEeCCcchHHHHHHHHHHc
Confidence 0 011122 348999999999999999888 999999999999999999999999999999999999999
Q ss_pred CeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHh
Q 011765 399 QIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLKN 464 (478)
Q Consensus 399 g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~ 464 (478)
|+|..+...+ ++++.|.++|+++|+ |++++++++++++.+.+.++.+++++.|++.+..
T Consensus 356 g~g~~~~~~~----~~~~~l~~~i~~ll~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 414 (415)
T 3rsc_A 356 GLGAVLPGEK----ADGDTLLAAVGAVAA---DPALLARVEAMRGHVRRAGGAARAADAVEAYLAR 414 (415)
T ss_dssp TCEEECCGGG----CCHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred CCEEEcccCC----CCHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Confidence 9999998877 899999999999999 8999999999999999999999999988887653
No 11
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=100.00 E-value=3.7e-43 Score=349.60 Aligned_cols=381 Identities=13% Similarity=0.047 Sum_probs=266.1
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChh
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYD 86 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~ 86 (478)
|||+|++.++.||++|++.||++|+++||+|+|++++.+.+.+...| ++|..++..... + ... .......
T Consensus 1 MrIli~~~gt~Ghv~p~~~La~~L~~~Gh~V~v~~~~~~~~~v~~~g------~~~~~l~~~~~~-~-~~~--~~~~~~~ 70 (404)
T 3h4t_A 1 MGVLITGCGSRGDTEPLVALAARLRELGADARMCLPPDYVERCAEVG------VPMVPVGRAVRA-G-ARE--PGELPPG 70 (404)
T ss_dssp -CEEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEECGGGHHHHHHTT------CCEEECSSCSSG-G-GSC--TTCCCTT
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHHCCCeEEEEeCHHHHHHHHHcC------CceeecCCCHHH-H-hcc--ccCCHHH
Confidence 89999999999999999999999999999999999999988888877 899988732111 0 000 0000111
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcccH---HHHHHHhCCCeEEEecchHHHHHhhccccccccccCCCCC
Q 011765 87 EVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWL---PARARELGIPSGFFSIFTAATLGYFGPSSVLINDSGDHLK 163 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~---~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (478)
....+..........+.+++ .+||+||+|.....+ ..+|+.+|||++.+..++........+..
T Consensus 71 ~~~~~~~~~~~~~~~l~~~~--~~pD~Vi~~~~~~~~~~a~~~A~~lgiP~v~~~~~p~~~~~~~~~~~----------- 137 (404)
T 3h4t_A 71 AAEVVTEVVAEWFDKVPAAI--EGCDAVVTTGLLPAAVAVRSMAEKLGIPYRYTVLSPDHLPSEQSQAE----------- 137 (404)
T ss_dssp CGGGHHHHHHHHHHHHHHHH--TTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSGGGSCHHH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHh--cCCCEEEECCchhhhhhhhhHHhhcCCCEEEEEcCCccCCChhHHHH-----------
Confidence 11222333333333444444 379999998665544 68999999999988776543111000000
Q ss_pred CCCcccCCCcccccccccccchhhhh-hhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHhhcCCCe
Q 011765 164 TPEDYTRVPNWVSFPTTISYRLFEAR-KVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQLHRKPV 242 (478)
Q Consensus 164 ~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~~~~~ 242 (478)
+ ..... ..+.... .+.++...+ ++.......... ..+..+++..+.+.+. ..+++++
T Consensus 138 ----------~-~~~~~--~~~~~~~~~~~~~~~~l--gl~~~~~~~~~~-~~~~~l~~~~~~l~p~------~~~~~~~ 195 (404)
T 3h4t_A 138 ----------R-DMYNQ--GADRLFGDAVNSHRASI--GLPPVEHLYDYG-YTDQPWLAADPVLSPL------RPTDLGT 195 (404)
T ss_dssp ----------H-HHHHH--HHHHHHHHHHHHHHHHT--TCCCCCCHHHHH-HCSSCEECSCTTTSCC------CTTCCSC
T ss_pred ----------H-HHHHH--HHHHHhHHHHHHHHHHc--CCCCCcchhhcc-ccCCeEEeeCcceeCC------CCCCCCe
Confidence 0 00000 0000000 001111111 111111111110 1223455666666654 3466789
Q ss_pred eeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCC
Q 011765 243 IPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADT 322 (478)
Q Consensus 243 ~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~ 322 (478)
.++|++..+.. ...++++.+|++. ++++|||++||... ..+.+..++++++..+.+++|+.+....
T Consensus 196 ~~~G~~~~~~~-------~~~~~~l~~~l~~--~~~~Vlv~~Gs~~~-~~~~~~~~~~al~~~~~~vv~~~g~~~~---- 261 (404)
T 3h4t_A 196 VQTGAWILPDQ-------RPLSAELEGFLRA--GSPPVYVGFGSGPA-PAEAARVAIEAVRAQGRRVVLSSGWAGL---- 261 (404)
T ss_dssp CBCCCCCCCCC-------CCCCHHHHHHHHT--SSCCEEECCTTSCC-CTTHHHHHHHHHHHTTCCEEEECTTTTC----
T ss_pred EEeCccccCCC-------CCCCHHHHHHHhc--CCCeEEEECCCCCC-cHHHHHHHHHHHHhCCCEEEEEeCCccc----
Confidence 99998765432 3456778899975 35699999999987 6788889999999999999998875421
Q ss_pred CCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEE
Q 011765 323 EPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVE 402 (478)
Q Consensus 323 ~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~ 402 (478)
.....+ +|+.+.+|+||.++|+++++ ||||||+||+.||+++|||+|++|+..||+.||+++++.|+|.
T Consensus 262 ~~~~~~---------~~v~~~~~~~~~~ll~~~d~--~v~~gG~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~~G~g~ 330 (404)
T 3h4t_A 262 GRIDEG---------DDCLVVGEVNHQVLFGRVAA--VVHHGGAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGV 330 (404)
T ss_dssp CCSSCC---------TTEEEESSCCHHHHGGGSSE--EEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEE
T ss_pred ccccCC---------CCEEEecCCCHHHHHhhCcE--EEECCcHHHHHHHHHcCCCEEEcCCcccHHHHHHHHHHCCCEe
Confidence 111223 48999999999999998888 9999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHhcc
Q 011765 403 LIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLKNHR 466 (478)
Q Consensus 403 ~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 466 (478)
.++..+ ++.++|.++|+++++ ++|+++++++++.+.+ .+.+++++.|++.++..+
T Consensus 331 ~l~~~~----~~~~~l~~ai~~ll~----~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~ 385 (404)
T 3h4t_A 331 AHDGPT----PTVESLSAALATALT----PGIRARAAAVAGTIRT-DGTTVAAKLLLEAISRQR 385 (404)
T ss_dssp ECSSSS----CCHHHHHHHHHHHTS----HHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHC--
T ss_pred ccCcCC----CCHHHHHHHHHHHhC----HHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhhCC
Confidence 998877 899999999999998 5799999999999999 888999999988886443
No 12
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=100.00 E-value=3.7e-42 Score=342.48 Aligned_cols=392 Identities=18% Similarity=0.185 Sum_probs=274.0
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCCh
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPY 85 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~ 85 (478)
+|||+|++.++.||++|++.||++|+++||+|+|++++.+.+.+...| +.+..++..... .............
T Consensus 4 M~~il~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~~~~~~~~~~~G------~~~~~~~~~~~~-~~~~~~~~~~~~~ 76 (402)
T 3ia7_A 4 QRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEVKAAG------AEVVLYKSEFDT-FHVPEVVKQEDAE 76 (402)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHTT------CEEEECCCGGGT-SSSSSSSCCTTHH
T ss_pred CCEEEEEeCCCCcccccHHHHHHHHHhCCCEEEEEcCHHHHHHHHHcC------CEEEeccccccc-ccccccccccchH
Confidence 459999999999999999999999999999999999998888888777 999988731111 0000001111112
Q ss_pred hHHHH-HHHHHhhhhHHHHHHHhhcCCCEEEEc-CCcccHHHHHHHhCCCeEEEecchHHHHHhhccccccccccCCCCC
Q 011765 86 DEVKY-LKQSFDCLEEPMAKLLQSLAPDWLLFD-FAAYWLPARARELGIPSGFFSIFTAATLGYFGPSSVLINDSGDHLK 163 (478)
Q Consensus 86 ~~~~~-~~~~~~~~~~~l~~ll~~~~pD~vI~D-~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (478)
..+.. +........+.+.+++++++||+||+| .+.+++..+|+.+|||++.+.+...........+...
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~~~~~~~~~~--------- 147 (402)
T 3ia7_A 77 TQLHLVYVRENVAILRAAEEALGDNPPDLVVYDVFPFIAGRLLAARWDRPAVRLTGGFAANEHYSLFKELW--------- 147 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEESTTHHHHHHHHHHHTCCEEEEESSCCCBTTBCHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCEEEECchHHHHHHHHHHhhCCCEEEEecccccCcccccccccc---------
Confidence 22222 333333455678888899999999999 7777889999999999998865332211000000000
Q ss_pred CCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccC-CcEEEEcCcCccChHHHHHHHhhcCCCe
Q 011765 164 TPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKG-CDIVAVRSCMEFEPEWLKLLEQLHRKPV 242 (478)
Q Consensus 164 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ns~~~le~~~~~~~~~~~~~~~ 242 (478)
+..+...+. ........+....... ++... ....... .+..+.....++++. ...++.++
T Consensus 148 -------~~~~~~~~~---~~~~~~~~~~~~~~~~--g~~~~--~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~ 208 (402)
T 3ia7_A 148 -------KSNGQRHPA---DVEAVHSVLVDLLGKY--GVDTP--VKEYWDEIEGLTIVFLPKSFQPF-----AETFDERF 208 (402)
T ss_dssp -------HHHTCCCGG---GSHHHHHHHHHHHHTT--TCCSC--HHHHHTCCCSCEEESSCGGGSTT-----GGGCCTTE
T ss_pred -------ccccccChh---hHHHHHHHHHHHHHHc--CCCCC--hhhhhcCCCCeEEEEcChHhCCc-----cccCCCCe
Confidence 000000000 0000001111112222 11110 0111111 255666665555543 45678889
Q ss_pred eeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCC
Q 011765 243 IPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADT 322 (478)
Q Consensus 243 ~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~ 322 (478)
.++||+...... ...|+...+++++|||++||......+.+..++++++..+.+++|+.+..... +
T Consensus 209 ~~vGp~~~~~~~------------~~~~~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~ 274 (402)
T 3ia7_A 209 AFVGPTLTGRDG------------QPGWQPPRPDAPVLLVSLGNQFNEHPEFFRACAQAFADTPWHVVMAIGGFLDP--A 274 (402)
T ss_dssp EECCCCCCC----------------CCCCCSSTTCCEEEEECCSCSSCCHHHHHHHHHHHTTSSCEEEEECCTTSCG--G
T ss_pred EEeCCCCCCccc------------CCCCcccCCCCCEEEEECCCCCcchHHHHHHHHHHHhcCCcEEEEEeCCcCCh--h
Confidence 999998653221 23355555667899999999987777788899999998888888877643110 0
Q ss_pred CCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEecccc-ccchhhHHHHHhhcCeE
Q 011765 323 EPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTC-YADQGLNAKLLEEKQIV 401 (478)
Q Consensus 323 ~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~-~~DQ~~na~~v~~~g~G 401 (478)
....+ .+|+.+..|+|+.++|+++++ ||||||+||+.||+++|+|+|++|. ..||+.||.++++.|+|
T Consensus 275 ~~~~~---------~~~v~~~~~~~~~~ll~~ad~--~v~~~G~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g 343 (402)
T 3ia7_A 275 VLGPL---------PPNVEAHQWIPFHSVLAHARA--CLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLG 343 (402)
T ss_dssp GGCSC---------CTTEEEESCCCHHHHHTTEEE--EEECCCHHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSE
T ss_pred hhCCC---------CCcEEEecCCCHHHHHhhCCE--EEECCCHHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCE
Confidence 11122 348999999999999999888 9999999999999999999999999 99999999999999999
Q ss_pred EEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHh
Q 011765 402 ELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLKN 464 (478)
Q Consensus 402 ~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~ 464 (478)
..+...+ ++++.|.++|+++|+ |++++++++++++.+.+.++.+++++.+++.+++
T Consensus 344 ~~~~~~~----~~~~~l~~~~~~ll~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 399 (402)
T 3ia7_A 344 SVLRPDQ----LEPASIREAVERLAA---DSAVRERVRRMQRDILSSGGPARAADEVEAYLGR 399 (402)
T ss_dssp EECCGGG----CSHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred EEccCCC----CCHHHHHHHHHHHHc---CHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhh
Confidence 9998876 899999999999999 8999999999999999999999999999888754
No 13
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=100.00 E-value=4e-41 Score=338.23 Aligned_cols=393 Identities=21% Similarity=0.216 Sum_probs=266.4
Q ss_pred CCCC-CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccc
Q 011765 1 MADN-SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEA 79 (478)
Q Consensus 1 ~~~~-~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~ 79 (478)
|..+ ++|||+|++.++.||++|++.||++|+++||+|++++++...+.+...| ++++.++. .++.....
T Consensus 1 M~~~m~m~kIl~~~~~~~Gh~~p~~~la~~L~~~G~~V~~~~~~~~~~~~~~~g------~~~~~~~~----~~~~~~~~ 70 (430)
T 2iyf_A 1 MTTQTTPAHIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAATG------PRPVLYHS----TLPGPDAD 70 (430)
T ss_dssp -------CEEEEECCSCHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHTTS------CEEEECCC----CSCCTTSC
T ss_pred CCCccccceEEEEeCCCCccccchHHHHHHHHHCCCeEEEEeCHHHHHHHHhCC------CEEEEcCC----cCcccccc
Confidence 5553 3579999999999999999999999999999999999998876666666 88888872 22211110
Q ss_pred ---cCCCChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHhhcccccccc
Q 011765 80 ---TIDLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFGPSSVLIN 156 (478)
Q Consensus 80 ---~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~ 156 (478)
........+..+..........+.+++++.+||+||+|.+.+++..+|+.+|||++.+++...........+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~---- 146 (430)
T 2iyf_A 71 PEAWGSTLLDNVEPFLNDAIQALPQLADAYADDIPDLVLHDITSYPARVLARRWGVPAVSLSPNLVAWKGYEEEVA---- 146 (430)
T ss_dssp GGGGCSSHHHHHHHHHHHHHHHHHHHHHHHTTSCCSEEEEETTCHHHHHHHHHHTCCEEEEESSCCCCTTHHHHTH----
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEECCccHHHHHHHHHcCCCEEEEecccccccccccccc----
Confidence 0011112222222333445567888889999999999987778889999999999998765431100000000
Q ss_pred ccCCCCCCCCcccCCCcccccccc-cccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHH
Q 011765 157 DSGDHLKTPEDYTRVPNWVSFPTT-ISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLE 235 (478)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~ 235 (478)
.+.+ +.... ..... ....+.+..... ++. .........++.+++++.+++++. .
T Consensus 147 --------------~~~~-~~~~~~~~~~~-~~~~~~~~~~~~--g~~--~~~~~~~~~~~~~l~~~~~~~~~~-----~ 201 (430)
T 2iyf_A 147 --------------EPMW-REPRQTERGRA-YYARFEAWLKEN--GIT--EHPDTFASHPPRSLVLIPKALQPH-----A 201 (430)
T ss_dssp --------------HHHH-HHHHHSHHHHH-HHHHHHHHHHHT--TCC--SCHHHHHHCCSSEEECSCGGGSTT-----G
T ss_pred --------------cchh-hhhccchHHHH-HHHHHHHHHHHh--CCC--CCHHHHhcCCCcEEEeCcHHhCCC-----c
Confidence 0000 00000 00000 000111111111 111 011112224678899998888764 2
Q ss_pred hhcCCC-eeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhC-CCCEEEEE
Q 011765 236 QLHRKP-VIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELS-KLPFFWVL 313 (478)
Q Consensus 236 ~~~~~~-~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~i~~~ 313 (478)
..++++ +++|||....... ..+|....+++++||+++||......+.+..++++++.. +.+++|++
T Consensus 202 ~~~~~~~v~~vG~~~~~~~~------------~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 269 (430)
T 2iyf_A 202 DRVDEDVYTFVGACQGDRAE------------EGGWQRPAGAEKVVLVSLGSAFTKQPAFYRECVRAFGNLPGWHLVLQI 269 (430)
T ss_dssp GGSCTTTEEECCCCC-----------------CCCCCCCTTCSEEEEEECTTTCC-CHHHHHHHHHHHTTCTTEEEEEEC
T ss_pred ccCCCccEEEeCCcCCCCCC------------CCCCccccCCCCeEEEEcCCCCCCcHHHHHHHHHHHhcCCCeEEEEEe
Confidence 456777 9999986532110 123555445677999999999855568888899999885 77888877
Q ss_pred ecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhhHHH
Q 011765 314 KKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAK 393 (478)
Q Consensus 314 ~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~ 393 (478)
+..... +....+ .+|+.+..|+||.++|+++++ ||||||+||++||+++|+|+|++|...||..||+
T Consensus 270 G~~~~~--~~l~~~---------~~~v~~~~~~~~~~~l~~ad~--~v~~~G~~t~~Ea~~~G~P~i~~p~~~~q~~~a~ 336 (430)
T 2iyf_A 270 GRKVTP--AELGEL---------PDNVEVHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNAD 336 (430)
T ss_dssp C---CG--GGGCSC---------CTTEEEESSCCHHHHHTTCSE--EEECCCHHHHHHHHHTTCCEEECCCSHHHHHHHH
T ss_pred CCCCCh--HHhccC---------CCCeEEEecCCHHHHhhccCE--EEECCCccHHHHHHHhCCCEEECCCccchHHHHH
Confidence 643210 001112 348999999999999999998 9999999999999999999999999999999999
Q ss_pred HHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHh
Q 011765 394 LLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLKN 464 (478)
Q Consensus 394 ~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~ 464 (478)
++++.|+|+.++..+ ++.++|.++|+++++ |+++++++.++++.+.+.++.+++++.+++.+++
T Consensus 337 ~~~~~g~g~~~~~~~----~~~~~l~~~i~~ll~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 400 (430)
T 2iyf_A 337 MLQGLGVARKLATEE----ATADLLRETALALVD---DPEVARRLRRIQAEMAQEGGTRRAADLIEAELPA 400 (430)
T ss_dssp HHHHTTSEEECCCC-----CCHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTSCC
T ss_pred HHHHcCCEEEcCCCC----CCHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhc
Confidence 999999999998776 899999999999999 8999999999999998888778888877776643
No 14
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=100.00 E-value=6e-41 Score=337.86 Aligned_cols=389 Identities=15% Similarity=0.122 Sum_probs=254.7
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCC-CCCCCCc-ccc--
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHV-DNLRENA-EAT-- 80 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~-~~l~~~~-~~~-- 80 (478)
.+|||+|++.++.||++|+++||++|+++||+|+|++++.+.+.+...| ++|+.++.... .++.... ...
T Consensus 19 ~~mrIl~~~~~~~GHv~p~l~la~~L~~~GheV~~~~~~~~~~~v~~~G------~~~~~i~~~~~~~~~~~~~~~~~~~ 92 (441)
T 2yjn_A 19 SHMRVVFSSMASKSHLFGLVPLAWAFRAAGHEVRVVASPALTEDITAAG------LTAVPVGTDVDLVDFMTHAGHDIID 92 (441)
T ss_dssp CCCEEEEECCSCHHHHTTTHHHHHHHHHTTCEEEEEECGGGHHHHHTTT------CCEEECSCCCCHHHHHHHTTHHHHH
T ss_pred CccEEEEEcCCCcchHhHHHHHHHHHHHCCCeEEEEeCchhHHHHHhCC------CceeecCCccchHHHhhhhhccccc
Confidence 3699999999999999999999999999999999999999887777777 99998873110 0000000 000
Q ss_pred ----CC-----C---ChhHH----HHHHHHHh-----h-hhHHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEEe
Q 011765 81 ----ID-----L---PYDEV----KYLKQSFD-----C-LEEPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFFS 138 (478)
Q Consensus 81 ----~~-----~---~~~~~----~~~~~~~~-----~-~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~ 138 (478)
.+ . ....+ ..+...+. . ....+.+++++.+||+||+|....++..+|+.+|||++.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVv~d~~~~~~~~aA~~lgiP~v~~~ 172 (441)
T 2yjn_A 93 YVRSLDFSERDPATLTWEHLLGMQTVLTPTFYALMSPDTLIEGMVSFCRKWRPDLVIWEPLTFAAPIAAAVTGTPHARLL 172 (441)
T ss_dssp HHTTCCCTTCCGGGGSHHHHHHHHHHHHHHTTTTSSCHHHHHHHHHHHHHHCCSEEEECTTCTHHHHHHHHHTCCEEEEC
T ss_pred ccccccccccCcchhhhhhhhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCEEEecCcchhHHHHHHHcCCCEEEEe
Confidence 00 0 11111 11211111 1 34456667788899999999877788999999999999886
Q ss_pred cchHHHHHhhccccccccccCCCCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEE
Q 011765 139 IFTAATLGYFGPSSVLINDSGDHLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIV 218 (478)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (478)
..+........... . ...+.|.. .........+.......... ..... .. ..+.+
T Consensus 173 ~~~~~~~~~~~~~~--~---------------~~~~~~~~---~~~~~~~~~l~~~~~~~g~~-~~~~~---~~-~~~~~ 227 (441)
T 2yjn_A 173 WGPDITTRARQNFL--G---------------LLPDQPEE---HREDPLAEWLTWTLEKYGGP-AFDEE---VV-VGQWT 227 (441)
T ss_dssp SSCCHHHHHHHHHH--H---------------HGGGSCTT---TCCCHHHHHHHHHHHHTTCC-CCCGG---GT-SCSSE
T ss_pred cCCCcchhhhhhhh--h---------------hccccccc---cccchHHHHHHHHHHHcCCC-CCCcc---cc-CCCeE
Confidence 54322111000000 0 00000100 00000001111111111100 00001 11 23445
Q ss_pred EEcCcCccChHHHHHHHhhcCCCeeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCC---CHHHH
Q 011765 219 AVRSCMEFEPEWLKLLEQLHRKPVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKP---SQEEL 295 (478)
Q Consensus 219 l~ns~~~le~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~---~~~~~ 295 (478)
+..+.+.++++ ..++. ..+++.... ...++.+|++..+++++|||++||.... ..+.+
T Consensus 228 l~~~~~~~~~~------~~~~~--~~~~~~~~~-----------~~~~~~~~l~~~~~~~~v~v~~Gs~~~~~~~~~~~~ 288 (441)
T 2yjn_A 228 IDPAPAAIRLD------TGLKT--VGMRYVDYN-----------GPSVVPEWLHDEPERRRVCLTLGISSRENSIGQVSI 288 (441)
T ss_dssp EECSCGGGSCC------CCCCE--EECCCCCCC-----------SSCCCCGGGSSCCSSCEEEEEC----------CCST
T ss_pred EEecCccccCC------CCCCC--CceeeeCCC-----------CCcccchHhhcCCCCCEEEEECCCCcccccChHHHH
Confidence 55544444431 11221 122222111 1123567888766778999999998853 34567
Q ss_pred HHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHh
Q 011765 296 TEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQF 375 (478)
Q Consensus 296 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~ 375 (478)
..++++++..+.+++|+.++.... ....+| +|+.+.+|+||.++|+++++ ||||||+||++||+++
T Consensus 289 ~~~~~al~~~~~~~v~~~g~~~~~---~l~~~~---------~~v~~~~~~~~~~ll~~ad~--~V~~~G~~t~~Ea~~~ 354 (441)
T 2yjn_A 289 EELLGAVGDVDAEIIATFDAQQLE---GVANIP---------DNVRTVGFVPMHALLPTCAA--TVHHGGPGSWHTAAIH 354 (441)
T ss_dssp TTTHHHHHTSSSEEEECCCTTTTS---SCSSCC---------SSEEECCSCCHHHHGGGCSE--EEECCCHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEEEECCcchh---hhccCC---------CCEEEecCCCHHHHHhhCCE--EEECCCHHHHHHHHHh
Confidence 778899988899999988743210 111233 48999999999999988888 9999999999999999
Q ss_pred CCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHH
Q 011765 376 GMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYV 455 (478)
Q Consensus 376 GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 455 (478)
|||+|++|+..||+.||+++++.|+|+.++..+ ++.++|.++|+++++ |++++++++++++.+.+.++.++++
T Consensus 355 G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~----~~~~~l~~~i~~ll~---~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (441)
T 2yjn_A 355 GVPQVILPDGWDTGVRAQRTQEFGAGIALPVPE----LTPDQLRESVKRVLD---DPAHRAGAARMRDDMLAEPSPAEVV 427 (441)
T ss_dssp TCCEEECCCSHHHHHHHHHHHHHTSEEECCTTT----CCHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred CCCEEEeCCcccHHHHHHHHHHcCCEEEccccc----CCHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 999999999999999999999999999998877 899999999999999 8999999999999999999999999
Q ss_pred HHHHHHHHh
Q 011765 456 DNFLNYLKN 464 (478)
Q Consensus 456 ~~i~~~~~~ 464 (478)
+.|++.+..
T Consensus 428 ~~i~~~~~~ 436 (441)
T 2yjn_A 428 GICEELAAG 436 (441)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 988887754
No 15
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=100.00 E-value=8.8e-41 Score=330.67 Aligned_cols=367 Identities=13% Similarity=0.116 Sum_probs=258.8
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCC-C---CccccCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLR-E---NAEATID 82 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~-~---~~~~~~~ 82 (478)
|||++++.++.||++|++.||++|+++||+|++++++...+.+...| +.++.++........ . ......+
T Consensus 1 MrIl~~~~~~~Gh~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (384)
T 2p6p_A 1 MRILFVAAGSPATVFALAPLATAARNAGHQVVMAANQDMGPVVTGVG------LPAVATTDLPIRHFITTDREGRPEAIP 74 (384)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTT------CCEEESCSSCHHHHHHBCTTSCBCCCC
T ss_pred CEEEEEeCCccchHhHHHHHHHHHHHCCCEEEEEeCHHHHHHHHhCC------CEEEEeCCcchHHHHhhhcccCccccC
Confidence 79999999999999999999999999999999999988766666666 888887621100000 0 0000000
Q ss_pred CChhHHHH-----HHHHHhhhhHHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHhhccccccccc
Q 011765 83 LPYDEVKY-----LKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFGPSSVLIND 157 (478)
Q Consensus 83 ~~~~~~~~-----~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~ 157 (478)
........ +..........+.+++++.+||+||+|.+.+++..+|+.+|||++.++..+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~~~~~a~~~giP~v~~~~~~~~-------------- 140 (384)
T 2p6p_A 75 SDPVAQARFTGRWFARMAASSLPRMLDFSRAWRPDLIVGGTMSYVAPLLALHLGVPHARQTWDAVD-------------- 140 (384)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCTHHHHHHHHHTCCEEEECCSSCC--------------
T ss_pred cchHHHHHHHHHHHHhhHHHHHHHHHHHHhccCCcEEEECcchhhHHHHHHhcCCCEEEeccCCcc--------------
Confidence 00011111 12222334556777788899999999988778889999999999987532100
Q ss_pred cCCCCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHhh
Q 011765 158 SGDHLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQL 237 (478)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~ 237 (478)
... ........+.+....+ ++. ....++.+++++...++++ ..
T Consensus 141 --------------~~~--------~~~~~~~~~~~~~~~~--g~~-------~~~~~~~~l~~~~~~~~~~------~~ 183 (384)
T 2p6p_A 141 --------------ADG--------IHPGADAELRPELSEL--GLE-------RLPAPDLFIDICPPSLRPA------NA 183 (384)
T ss_dssp --------------CTT--------THHHHHHHTHHHHHHT--TCS-------SCCCCSEEEECSCGGGSCT------TS
T ss_pred --------------cch--------hhHHHHHHHHHHHHHc--CCC-------CCCCCCeEEEECCHHHCCC------CC
Confidence 000 0000000000011100 000 0112678888888777754 11
Q ss_pred cC-CCeeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCC-----CHHHHHHHHHHHHhCCCCEEE
Q 011765 238 HR-KPVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKP-----SQEELTEIALGLELSKLPFFW 311 (478)
Q Consensus 238 ~~-~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~-----~~~~~~~~~~al~~~~~~~i~ 311 (478)
++ .++.++++ . . ..++.+|++..+++++|||++||.... +.+.+..+++++++.+.+++|
T Consensus 184 ~~~~~~~~~~~-~--~-----------~~~~~~~l~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ 249 (384)
T 2p6p_A 184 APARMMRHVAT-S--R-----------QCPLEPWMYTRDTRQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRWDVELIV 249 (384)
T ss_dssp CCCEECCCCCC-C--C-----------CCBCCHHHHCCCSSCEEEEECSSSSSCCSSCCCCTTHHHHHHHHHTTTCEEEE
T ss_pred CCCCceEecCC-C--C-----------CCCCCchhhcCCCCCEEEEECCCCCccccccccHHHHHHHHHHHhcCCcEEEE
Confidence 22 22344421 1 0 123556887655667999999998864 447788899999988999999
Q ss_pred EEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhhH
Q 011765 312 VLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLN 391 (478)
Q Consensus 312 ~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~n 391 (478)
+.++. . .+.+. . .++|+.+ .|+||.++|+++++ ||||||+||++||+++|+|+|++|...||+.|
T Consensus 250 ~~g~~------~----~~~l~-~-~~~~v~~-~~~~~~~~l~~~d~--~v~~~G~~t~~Ea~~~G~P~v~~p~~~dq~~~ 314 (384)
T 2p6p_A 250 AAPDT------V----AEALR-A-EVPQARV-GWTPLDVVAPTCDL--LVHHAGGVSTLTGLSAGVPQLLIPKGSVLEAP 314 (384)
T ss_dssp ECCHH------H----HHHHH-H-HCTTSEE-ECCCHHHHGGGCSE--EEECSCTTHHHHHHHTTCCEEECCCSHHHHHH
T ss_pred EeCCC------C----HHhhC-C-CCCceEE-cCCCHHHHHhhCCE--EEeCCcHHHHHHHHHhCCCEEEccCcccchHH
Confidence 87531 0 01111 1 2458999 99999999988887 99999999999999999999999999999999
Q ss_pred HHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHhcc
Q 011765 392 AKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLKNHR 466 (478)
Q Consensus 392 a~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 466 (478)
|.++++.|+|+.++..+ ++.++|.++|+++|+ |++++++++++++.+++.++.+++++.|++.+-.+.
T Consensus 315 a~~~~~~g~g~~~~~~~----~~~~~l~~~i~~ll~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 382 (384)
T 2p6p_A 315 ARRVADYGAAIALLPGE----DSTEAIADSCQELQA---KDTYARRAQDLSREISGMPLPATVVTALEQLAHHHH 382 (384)
T ss_dssp HHHHHHHTSEEECCTTC----CCHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCeEecCcCC----CCHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhhcc
Confidence 99999999999998766 899999999999999 899999999999999999999999998888775544
No 16
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=100.00 E-value=6.1e-39 Score=318.97 Aligned_cols=366 Identities=16% Similarity=0.129 Sum_probs=237.9
Q ss_pred CCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCC-CCCC----CC-c
Q 011765 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHV-DNLR----EN-A 77 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~-~~l~----~~-~ 77 (478)
..+|||+|++.++.||++|++.|+++|+++||+|++++++.+.+.+...| +.+..++.... ..+. .. .
T Consensus 13 ~~~MrIl~~~~~~~gh~~~~~~La~~L~~~GheV~v~~~~~~~~~~~~~G------~~~~~~~~~~~~~~~~~~~~~~~~ 86 (398)
T 4fzr_A 13 GSHMRILVIAGCSEGFVMPLVPLSWALRAAGHEVLVAASENMGPTVTGAG------LPFAPTCPSLDMPEVLSWDREGNR 86 (398)
T ss_dssp --CCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEEEGGGHHHHHHTT------CCEEEEESSCCHHHHHSBCTTSCB
T ss_pred CCceEEEEEcCCCcchHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhCC------CeeEecCCccchHhhhhhhccCcc
Confidence 34799999999999999999999999999999999999988888777777 88888862100 0000 00 0
Q ss_pred cccCCCCh----hHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHhhccccc
Q 011765 78 EATIDLPY----DEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFGPSSV 153 (478)
Q Consensus 78 ~~~~~~~~----~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~ 153 (478)
........ .....+......+...+.+++++++||+||+|...+++..+|+.+|||++.+.........
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVv~d~~~~~~~~~a~~~giP~v~~~~~~~~~~~------- 159 (398)
T 4fzr_A 87 TTMPREEKPLLEHIGRGYGRLVLRMRDEALALAERWKPDLVLTETYSLTGPLVAATLGIPWIEQSIRLASPEL------- 159 (398)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCTHHHHHHHHHTCCEEEECCSSCCCHH-------
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECccccHHHHHHHhhCCCEEEeccCCCCchh-------
Confidence 00000011 1112223333345567888889999999999988888899999999999987542210000
Q ss_pred cccccCCCCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHH
Q 011765 154 LINDSGDHLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKL 233 (478)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~ 233 (478)
+.+ .....+......+ ++. .....+..+......++..
T Consensus 160 --------------------~~~---------~~~~~l~~~~~~~--~~~-------~~~~~~~~~~~~~~~~~~~---- 197 (398)
T 4fzr_A 160 --------------------IKS---------AGVGELAPELAEL--GLT-------DFPDPLLSIDVCPPSMEAQ---- 197 (398)
T ss_dssp --------------------HHH---------HHHHHTHHHHHTT--TCS-------SCCCCSEEEECSCGGGC------
T ss_pred --------------------hhH---------HHHHHHHHHHHHc--CCC-------CCCCCCeEEEeCChhhCCC----
Confidence 000 0000011011111 000 0122344555444443332
Q ss_pred HHhhcCCCeeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCC--------CHHHHHHHHHHHHhC
Q 011765 234 LEQLHRKPVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKP--------SQEELTEIALGLELS 305 (478)
Q Consensus 234 ~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~--------~~~~~~~~~~al~~~ 305 (478)
......++.++++.. ...++..|+...+++++|||++||.... ..+.+..+++++++.
T Consensus 198 -~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~ 263 (398)
T 4fzr_A 198 -PKPGTTKMRYVPYNG-------------RNDQVPSWVFEERKQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKL 263 (398)
T ss_dssp ---CCCEECCCCCCCC-------------SSCCCCHHHHSCCSSCEEECC----------------CCSHHHHHHHGGGG
T ss_pred -CCCCCCCeeeeCCCC-------------CCCCCchhhhcCCCCCEEEEEccCcccccccccccchHHHHHHHHHHHHhC
Confidence 110001122222110 1223455776656678999999998753 345688899999988
Q ss_pred CCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccc
Q 011765 306 KLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCY 385 (478)
Q Consensus 306 ~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~ 385 (478)
+.+++|+.++.... ....+| +|+++.+|+|+.++|+++++ ||||||.||+.||+++|+|+|++|..
T Consensus 264 ~~~~v~~~~~~~~~---~l~~~~---------~~v~~~~~~~~~~ll~~ad~--~v~~gG~~t~~Ea~~~G~P~v~~p~~ 329 (398)
T 4fzr_A 264 GFEVVVAVSDKLAQ---TLQPLP---------EGVLAAGQFPLSAIMPACDV--VVHHGGHGTTLTCLSEGVPQVSVPVI 329 (398)
T ss_dssp TCEEEECCCC-----------CC---------TTEEEESCCCHHHHGGGCSE--EEECCCHHHHHHHHHTTCCEEECCCS
T ss_pred CCEEEEEeCCcchh---hhccCC---------CcEEEeCcCCHHHHHhhCCE--EEecCCHHHHHHHHHhCCCEEecCCc
Confidence 99999887653210 112233 48999999999999999888 99999999999999999999999999
Q ss_pred cchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHH
Q 011765 386 ADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFL 459 (478)
Q Consensus 386 ~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~ 459 (478)
.||+.||.++++.|+|+.++..+ ++++.|.++|+++|+ |+++++++++.++.+.+.++.++.++.++
T Consensus 330 ~~q~~~a~~~~~~g~g~~~~~~~----~~~~~l~~ai~~ll~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 396 (398)
T 4fzr_A 330 AEVWDSARLLHAAGAGVEVPWEQ----AGVESVLAACARIRD---DSSYVGNARRLAAEMATLPTPADIVRLIE 396 (398)
T ss_dssp GGGHHHHHHHHHTTSEEECC-----------CHHHHHHHHHH---CTHHHHHHHHHHHHHTTSCCHHHHHHHHT
T ss_pred hhHHHHHHHHHHcCCEEecCccc----CCHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 99999999999999999998877 899999999999999 89999999999999999998877777654
No 17
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=100.00 E-value=1.1e-37 Score=309.98 Aligned_cols=359 Identities=15% Similarity=0.102 Sum_probs=249.3
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCcc------
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAE------ 78 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~------ 78 (478)
.+|||+|++.++.||++|++.||++|+++||+|+++++ .+.+.+...| +.+..++... .+.....
T Consensus 19 ~~MrIl~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~-~~~~~~~~~G------~~~~~~~~~~--~~~~~~~~~~~~~ 89 (398)
T 3oti_A 19 RHMRVLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVA-EHADRAAAAG------LEVVDVAPDY--SAVKVFEQVAKDN 89 (398)
T ss_dssp CCCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEES-SCHHHHHTTT------CEEEESSTTC--CHHHHHHHHHHHC
T ss_pred hcCEEEEEcCCCcchHhHHHHHHHHHHHCCCEEEEecc-chHHHHHhCC------CeeEecCCcc--CHHHHhhhcccCC
Confidence 46999999999999999999999999999999999999 7777777777 8998886210 0000000
Q ss_pred ---------ccCCCChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHhhc
Q 011765 79 ---------ATIDLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFG 149 (478)
Q Consensus 79 ---------~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~ 149 (478)
............+......+...+.+++++++||+||+|...+++..+|+.+|||++.+.......
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVv~d~~~~~~~~aA~~~giP~v~~~~~~~~~----- 164 (398)
T 3oti_A 90 PRFAETVATRPAIDLEEWGVQIAAVNRPLVDGTMALVDDYRPDLVVYEQGATVGLLAADRAGVPAVQRNQSAWRT----- 164 (398)
T ss_dssp HHHHHTGGGSCCCSGGGGHHHHHHHHGGGHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHTCCEEEECCTTCCC-----
T ss_pred ccccccccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEECchhhHHHHHHHHcCCCEEEEeccCCCc-----
Confidence 001112223334444555567788899999999999999888888999999999999764321000
Q ss_pred cccccccccCCCCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChH
Q 011765 150 PSSVLINDSGDHLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPE 229 (478)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~ 229 (478)
..+.+ .....+......+ .......+..+......+..+
T Consensus 165 ----------------------~~~~~---------~~~~~l~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 203 (398)
T 3oti_A 165 ----------------------RGMHR---------SIASFLTDLMDKH----------QVSLPEPVATIESFPPSLLLE 203 (398)
T ss_dssp ----------------------TTHHH---------HHHTTCHHHHHHT----------TCCCCCCSEEECSSCGGGGTT
T ss_pred ----------------------cchhh---------HHHHHHHHHHHHc----------CCCCCCCCeEEEeCCHHHCCC
Confidence 00000 0000000000000 000112233443332222211
Q ss_pred HHHHHHhhcCCCeeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCC--CHHHHHHHHHHHHhCCC
Q 011765 230 WLKLLEQLHRKPVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKP--SQEELTEIALGLELSKL 307 (478)
Q Consensus 230 ~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~--~~~~~~~~~~al~~~~~ 307 (478)
. ....++ +.++ |. .....+..|+...+++++|||++||.... ..+.+..+++++++.+.
T Consensus 204 ~---~~~~~~--~~~~-~~-------------~~~~~~~~~~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~~~ 264 (398)
T 3oti_A 204 A---EPEGWF--MRWV-PY-------------GGGAVLGDRLPPVPARPEVAITMGTIELQAFGIGAVEPIIAAAGEVDA 264 (398)
T ss_dssp S---CCCSBC--CCCC-CC-------------CCCEECCSSCCCCCSSCEEEECCTTTHHHHHCGGGHHHHHHHHHTSSS
T ss_pred C---CCCCCC--cccc-CC-------------CCCcCCchhhhcCCCCCEEEEEcCCCccccCcHHHHHHHHHHHHcCCC
Confidence 0 000011 1111 00 00122445776666778999999998643 55778889999998899
Q ss_pred CEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccc
Q 011765 308 PFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYAD 387 (478)
Q Consensus 308 ~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~D 387 (478)
+++|+.++.... ....+| +|+.+..|+|+.++|+++++ ||||||.||+.||+++|+|+|++|...|
T Consensus 265 ~~v~~~g~~~~~---~l~~~~---------~~v~~~~~~~~~~ll~~ad~--~v~~~G~~t~~Eal~~G~P~v~~p~~~d 330 (398)
T 3oti_A 265 DFVLALGDLDIS---PLGTLP---------RNVRAVGWTPLHTLLRTCTA--VVHHGGGGTVMTAIDAGIPQLLAPDPRD 330 (398)
T ss_dssp EEEEECTTSCCG---GGCSCC---------TTEEEESSCCHHHHHTTCSE--EEECCCHHHHHHHHHHTCCEEECCCTTC
T ss_pred EEEEEECCcChh---hhccCC---------CcEEEEccCCHHHHHhhCCE--EEECCCHHHHHHHHHhCCCEEEcCCCch
Confidence 999987654210 111223 48999999999999999888 9999999999999999999999999999
Q ss_pred hhhHH--HHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHH
Q 011765 388 QGLNA--KLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYL 462 (478)
Q Consensus 388 Q~~na--~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~ 462 (478)
|+.|| .++++.|+|+.++..+ ++++.|. ++|+ |++++++++++++.+.+.++.+++++.+++.+
T Consensus 331 q~~~a~~~~~~~~g~g~~~~~~~----~~~~~l~----~ll~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 331 QFQHTAREAVSRRGIGLVSTSDK----VDADLLR----RLIG---DESLRTAAREVREEMVALPTPAETVRRIVERI 396 (398)
T ss_dssp CSSCTTHHHHHHHTSEEECCGGG----CCHHHHH----HHHH---CHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCEEeeCCCC----CCHHHHH----HHHc---CHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 99999 9999999999998876 7887776 8898 89999999999999999999999888887754
No 18
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=100.00 E-value=5.5e-37 Score=304.13 Aligned_cols=366 Identities=14% Similarity=0.109 Sum_probs=247.7
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEe-cCCCC--CC----CCCCcc
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKI-SLPHV--DN----LRENAE 78 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i-~~~~~--~~----l~~~~~ 78 (478)
+|||+|++.++.||++|++.|+++|+++||+|++++++...+.+...| +.+..+ +.+.. .. ......
T Consensus 1 ~MrIl~~~~~~~gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (391)
T 3tsa_A 1 HMRVLVVPLPYPTHLMAMVPLCWALQASGHEVLIAAPPELQATAHGAG------LTTAGIRGNDRTGDTGGTTQLRFPNP 74 (391)
T ss_dssp CCEEEEECCSCHHHHHTTHHHHHHHHHTTCEEEEEECHHHHHHHHHBT------CEEEEC--------------CCSCCG
T ss_pred CcEEEEEcCCCcchhhhHHHHHHHHHHCCCEEEEecChhhHHHHHhCC------CceeeecCCccchhhhhhhccccccc
Confidence 599999999999999999999999999999999999988877777777 888877 31100 00 000000
Q ss_pred ccC-CCChhHHHHHHHHHhhh-------hHHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHhhcc
Q 011765 79 ATI-DLPYDEVKYLKQSFDCL-------EEPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFGP 150 (478)
Q Consensus 79 ~~~-~~~~~~~~~~~~~~~~~-------~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~ 150 (478)
... .........+......+ ...+.+++++++||+||+|...+.+..+|+.+|||++.+.......
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~PD~Vv~~~~~~~~~~aa~~~giP~v~~~~~~~~~------ 148 (391)
T 3tsa_A 75 AFGQRDTEAGRQLWEQTASNVAQSSLDQLPEYLRLAEAWRPSVLLVDVCALIGRVLGGLLDLPVVLHRWGVDPT------ 148 (391)
T ss_dssp GGGCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHTTCCEEEECCSCCCT------
T ss_pred ccccccchhHHHHHHHHHHHHhhcchhhHHHHHHHHHhcCCCEEEeCcchhHHHHHHHHhCCCEEEEecCCccc------
Confidence 000 00011222223333334 6677888999999999999877778899999999999875322100
Q ss_pred ccccccccCCCCCCCCcccCCCcccccccccccchhhhhhh-hhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChH
Q 011765 151 SSVLINDSGDHLKTPEDYTRVPNWVSFPTTISYRLFEARKV-FDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPE 229 (478)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~ 229 (478)
.... ......+ ......+ ++. .....+..+.....+++..
T Consensus 149 ---------------------~~~~---------~~~~~~~~~~~~~~~--~~~-------~~~~~~~~~~~~~~~~~~~ 189 (391)
T 3tsa_A 149 ---------------------AGPF---------SDRAHELLDPVCRHH--GLT-------GLPTPELILDPCPPSLQAS 189 (391)
T ss_dssp ---------------------TTHH---------HHHHHHHHHHHHHHT--TSS-------SSCCCSEEEECSCGGGSCT
T ss_pred ---------------------cccc---------cchHHHHHHHHHHHc--CCC-------CCCCCceEEEecChhhcCC
Confidence 0000 0000001 0011111 000 0112244555444333321
Q ss_pred HHHHHHhhcCCCeeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccC--CC-HHHHHHHHHHHHhC-
Q 011765 230 WLKLLEQLHRKPVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAK--PS-QEELTEIALGLELS- 305 (478)
Q Consensus 230 ~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~--~~-~~~~~~~~~al~~~- 305 (478)
.......+.++ |.. ....+..|+...+++++|++++||... .. .+.+..++++ ++.
T Consensus 190 -----~~~~~~~~~~~-p~~-------------~~~~~~~~~~~~~~~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~~~p 249 (391)
T 3tsa_A 190 -----DAPQGAPVQYV-PYN-------------GSGAFPAWGAARTSARRVCICMGRMVLNATGPAPLLRAVAAA-TELP 249 (391)
T ss_dssp -----TSCCCEECCCC-CCC-------------CCEECCGGGSSCCSSEEEEEECCHHHHHHHCSHHHHHHHHHH-HTST
T ss_pred -----CCCccCCeeee-cCC-------------CCcCCCchhhcCCCCCEEEEEcCCCCCcccchHHHHHHHHHh-ccCC
Confidence 01011112222 111 011234577666667899999999853 23 6778888888 777
Q ss_pred CCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccc
Q 011765 306 KLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCY 385 (478)
Q Consensus 306 ~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~ 385 (478)
+.+++|+.++.... ....+ .+|+.+.+|+|+.++|+++++ ||||||.||++||+++|+|+|++|..
T Consensus 250 ~~~~v~~~~~~~~~---~l~~~---------~~~v~~~~~~~~~~ll~~ad~--~v~~~G~~t~~Ea~~~G~P~v~~p~~ 315 (391)
T 3tsa_A 250 GVEAVIAVPPEHRA---LLTDL---------PDNARIAESVPLNLFLRTCEL--VICAGGSGTAFTATRLGIPQLVLPQY 315 (391)
T ss_dssp TEEEEEECCGGGGG---GCTTC---------CTTEEECCSCCGGGTGGGCSE--EEECCCHHHHHHHHHTTCCEEECCCS
T ss_pred CeEEEEEECCcchh---hcccC---------CCCEEEeccCCHHHHHhhCCE--EEeCCCHHHHHHHHHhCCCEEecCCc
Confidence 77888887643110 11122 348999999999999988888 99999999999999999999999999
Q ss_pred cchhhHHHHHhhcCeEEEeec--cCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHH
Q 011765 386 ADQGLNAKLLEEKQIVELIPR--DEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLK 463 (478)
Q Consensus 386 ~DQ~~na~~v~~~g~G~~l~~--~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~ 463 (478)
.||+.|+.++++.|+|..++. .+ .+++.|.++|.++|+ |++++++++++++.+.+.++.+++++.+++.+.
T Consensus 316 ~~q~~~a~~~~~~g~g~~~~~~~~~----~~~~~l~~ai~~ll~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 388 (391)
T 3tsa_A 316 FDQFDYARNLAAAGAGICLPDEQAQ----SDHEQFTDSIATVLG---DTGFAAAAIKLSDEITAMPHPAALVRTLENTAA 388 (391)
T ss_dssp TTHHHHHHHHHHTTSEEECCSHHHH----TCHHHHHHHHHHHHT---CTHHHHHHHHHHHHHHTSCCHHHHHHHHHHC--
T ss_pred ccHHHHHHHHHHcCCEEecCccccc----CCHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 999999999999999999987 65 799999999999999 899999999999999999999988888877553
No 19
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=100.00 E-value=2.1e-34 Score=287.59 Aligned_cols=376 Identities=17% Similarity=0.185 Sum_probs=257.1
Q ss_pred CCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCC-------------CC
Q 011765 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLP-------------HV 70 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~-------------~~ 70 (478)
..+|||+|++.++.||++|++.||++|+++||+|++++++.+.+.+...| +.+..++.. ..
T Consensus 18 ~~~MrIl~~~~~~~Gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~ 91 (412)
T 3otg_A 18 GRHMRVLFASLGTHGHTYPLLPLATAARAAGHEVTFATGEGFAGTLRKLG------FEPVATGMPVFDGFLAALRIRFDT 91 (412)
T ss_dssp CCSCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHHTT------CEEEECCCCHHHHHHHHHHHHHSC
T ss_pred cceeEEEEEcCCCcccHHHHHHHHHHHHHCCCEEEEEccHHHHHHHHhcC------CceeecCcccccchhhhhhhhhcc
Confidence 34799999999999999999999999999999999999987766666666 888888620 00
Q ss_pred CCCCCCccccCCCChhHHHHHHHH-HhhhhHHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHHhhc
Q 011765 71 DNLRENAEATIDLPYDEVKYLKQS-FDCLEEPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFFSIFTAATLGYFG 149 (478)
Q Consensus 71 ~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~ 149 (478)
...+.. ............+... ...+...+.+++++.+||+||+|...+++..+|+.+|||+|.+.......
T Consensus 92 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvVv~~~~~~~~~~aa~~~giP~v~~~~~~~~~----- 164 (412)
T 3otg_A 92 DSPEGL--TPEQLSELPQIVFGRVIPQRVFDELQPVIERLRPDLVVQEISNYGAGLAALKAGIPTICHGVGRDTP----- 164 (412)
T ss_dssp SCCTTC--CHHHHTTSHHHHHHTHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHTCCEEEECCSCCCC-----
T ss_pred cCCccC--ChhHhhHHHHHHHhccchHHHHHHHHHHHHhcCCCEEEECchhhHHHHHHHHcCCCEEEecccccCc-----
Confidence 000000 0000011112222222 23344677888899999999999777778899999999999864321100
Q ss_pred cccccccccCCCCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChH
Q 011765 150 PSSVLINDSGDHLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPE 229 (478)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~ 229 (478)
+. ........+.+..... ++..... .....++.++..+..+++..
T Consensus 165 --------------------------~~-----~~~~~~~~~~~~~~~~--g~~~~~~--~~~~~~d~~i~~~~~~~~~~ 209 (412)
T 3otg_A 165 --------------------------DD-----LTRSIEEEVRGLAQRL--GLDLPPG--RIDGFGNPFIDIFPPSLQEP 209 (412)
T ss_dssp --------------------------SH-----HHHHHHHHHHHHHHHT--TCCCCSS--CCGGGGCCEEECSCGGGSCH
T ss_pred --------------------------hh-----hhHHHHHHHHHHHHHc--CCCCCcc--cccCCCCeEEeeCCHHhcCC
Confidence 00 0000000011111111 0100000 01234566666665555432
Q ss_pred HHHHHHhhcCCCeeeeccCCCCCCCCCCCCCCCChhhHhhh-cccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCC
Q 011765 230 WLKLLEQLHRKPVIPVGQLPTTTGDGDSDAETDTWRSIKEW-LDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLP 308 (478)
Q Consensus 230 ~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~ 308 (478)
...+..... |+...... ...+..+| ....+++++|++++|+......+.+..+++++++.+.+
T Consensus 210 -----~~~~~~~~~---~~~~~~~~--------~~~~~~~~~~~~~~~~~~vlv~~G~~~~~~~~~~~~~~~~l~~~~~~ 273 (412)
T 3otg_A 210 -----EFRARPRRH---ELRPVPFA--------EQGDLPAWLSSRDTARPLVYLTLGTSSGGTVEVLRAAIDGLAGLDAD 273 (412)
T ss_dssp -----HHHTCTTEE---ECCCCCCC--------CCCCCCGGGGGSCTTSCEEEEECTTTTCSCHHHHHHHHHHHHTSSSE
T ss_pred -----cccCCCCcc---eeeccCCC--------CCCCCCCccccccCCCCEEEEEcCCCCcCcHHHHHHHHHHHHcCCCE
Confidence 122221111 22111110 01123345 23344577999999999766678889999999988889
Q ss_pred EEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccch
Q 011765 309 FFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQ 388 (478)
Q Consensus 309 ~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ 388 (478)
++|+.++.... +....++ +|+.+..|+|+.++|+++++ ||+|||+||++||+++|+|+|++|...||
T Consensus 274 ~~~~~g~~~~~--~~l~~~~---------~~v~~~~~~~~~~~l~~ad~--~v~~~g~~t~~Ea~a~G~P~v~~p~~~~q 340 (412)
T 3otg_A 274 VLVASGPSLDV--SGLGEVP---------ANVRLESWVPQAALLPHVDL--VVHHGGSGTTLGALGAGVPQLSFPWAGDS 340 (412)
T ss_dssp EEEECCSSCCC--TTCCCCC---------TTEEEESCCCHHHHGGGCSE--EEESCCHHHHHHHHHHTCCEEECCCSTTH
T ss_pred EEEEECCCCCh--hhhccCC---------CcEEEeCCCCHHHHHhcCcE--EEECCchHHHHHHHHhCCCEEecCCchhH
Confidence 99988764311 0122233 48999999999999999998 99999999999999999999999999999
Q ss_pred hhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHH
Q 011765 389 GLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLK 463 (478)
Q Consensus 389 ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~ 463 (478)
..|+.++++.|+|..++..+ ++++.|.++|.++|+ |+++++++.+.++.+.+..+.++.++.+++.+.
T Consensus 341 ~~~~~~v~~~g~g~~~~~~~----~~~~~l~~ai~~ll~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 408 (412)
T 3otg_A 341 FANAQAVAQAGAGDHLLPDN----ISPDSVSGAAKRLLA---EESYRAGARAVAAEIAAMPGPDEVVRLLPGFAS 408 (412)
T ss_dssp HHHHHHHHHHTSEEECCGGG----CCHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHSCCHHHHHTTHHHHHC
T ss_pred HHHHHHHHHcCCEEecCccc----CCHHHHHHHHHHHHh---CHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 99999999999999999876 899999999999999 899999999999999988888888888888764
No 20
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.97 E-value=4.9e-30 Score=251.00 Aligned_cols=339 Identities=17% Similarity=0.115 Sum_probs=213.5
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCcc--ccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNI--DRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLP 84 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~--~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~ 84 (478)
.||+|...++-||++|.++||++|+++||+|+|+++.... +.+.+.| +.++.++. .+++... .....
T Consensus 3 ~~i~i~~GGTgGHi~palala~~L~~~g~~V~~vg~~~g~e~~~v~~~g------~~~~~i~~---~~~~~~~--~~~~~ 71 (365)
T 3s2u_A 3 GNVLIMAGGTGGHVFPALACAREFQARGYAVHWLGTPRGIENDLVPKAG------LPLHLIQV---SGLRGKG--LKSLV 71 (365)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEECSSSTHHHHTGGGT------CCEEECC------------------
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHhCCCEEEEEECCchHhhchhhhcC------CcEEEEEC---CCcCCCC--HHHHH
Confidence 4899888777799999999999999999999999987643 3455656 88888763 1221110 00111
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCc--ccHHHHHHHhCCCeEEEecchHHHHHhhccccccccccCCCC
Q 011765 85 YDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAA--YWLPARARELGIPSGFFSIFTAATLGYFGPSSVLINDSGDHL 162 (478)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~--~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (478)
...+.. ...+ ....+++++.+||+||++... .++..+|+.+|||++..-.
T Consensus 72 ~~~~~~----~~~~-~~~~~~l~~~~PDvVi~~g~~~s~p~~laA~~~~iP~vihe~----------------------- 123 (365)
T 3s2u_A 72 KAPLEL----LKSL-FQALRVIRQLRPVCVLGLGGYVTGPGGLAARLNGVPLVIHEQ----------------------- 123 (365)
T ss_dssp -CHHHH----HHHH-HHHHHHHHHHCCSEEEECSSSTHHHHHHHHHHTTCCEEEEEC-----------------------
T ss_pred HHHHHH----HHHH-HHHHHHHHhcCCCEEEEcCCcchHHHHHHHHHcCCCEEEEec-----------------------
Confidence 111111 1111 245678889999999998533 3456889999999986411
Q ss_pred CCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHhhcCCCe
Q 011765 163 KTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQLHRKPV 242 (478)
Q Consensus 163 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~~~~~ 242 (478)
...|+ .. .++. .+.++.++. ++++..+ ..++.
T Consensus 124 ----------n~~~G-----~~----nr~l-------------------~~~a~~v~~-~~~~~~~---------~~~k~ 155 (365)
T 3s2u_A 124 ----------NAVAG-----TA----NRSL-------------------APIARRVCE-AFPDTFP---------ASDKR 155 (365)
T ss_dssp ----------SSSCC-----HH----HHHH-------------------GGGCSEEEE-SSTTSSC---------C---C
T ss_pred ----------chhhh-----hH----HHhh-------------------ccccceeee-ccccccc---------CcCcE
Confidence 11111 00 0110 011222222 2222111 12346
Q ss_pred eeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCC----CCEEEEEecCCC
Q 011765 243 IPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSK----LPFFWVLKKRLG 318 (478)
Q Consensus 243 ~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~----~~~i~~~~~~~~ 318 (478)
.++|......... . -..+....++++.|+|..||... ......+.++++.+. ..++|+.+..
T Consensus 156 ~~~g~pvr~~~~~-----~-----~~~~~~~~~~~~~ilv~gGs~g~--~~~~~~~~~al~~l~~~~~~~vi~~~G~~-- 221 (365)
T 3s2u_A 156 LTTGNPVRGELFL-----D-----AHARAPLTGRRVNLLVLGGSLGA--EPLNKLLPEALAQVPLEIRPAIRHQAGRQ-- 221 (365)
T ss_dssp EECCCCCCGGGCC-----C-----TTSSCCCTTSCCEEEECCTTTTC--SHHHHHHHHHHHTSCTTTCCEEEEECCTT--
T ss_pred EEECCCCchhhcc-----c-----hhhhcccCCCCcEEEEECCcCCc--cccchhhHHHHHhcccccceEEEEecCcc--
Confidence 6777433221110 0 00111223456789999998774 223334556665443 3455555422
Q ss_pred CCCCCCCCCChhhhhhc--CCCcEEEeccCChh-hhhcCCCceeeeeccChhhHHHHHHhCCcEeccccc----cchhhH
Q 011765 319 QADTEPIELPDGFEERT--RGRGVVYTSWAPQL-AILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCY----ADQGLN 391 (478)
Q Consensus 319 ~~~~~~~~~p~~~~~~~--~~~n~~~~~~vpq~-~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~----~DQ~~n 391 (478)
..+...+.. ...++.+..|+++. ++++.+|+ +|||+|.+|+.|++++|+|+|.+|+. .+|..|
T Consensus 222 --------~~~~~~~~~~~~~~~~~v~~f~~dm~~~l~~aDl--vI~raG~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~N 291 (365)
T 3s2u_A 222 --------HAEITAERYRTVAVEADVAPFISDMAAAYAWADL--VICRAGALTVSELTAAGLPAFLVPLPHAIDDHQTRN 291 (365)
T ss_dssp --------THHHHHHHHHHTTCCCEEESCCSCHHHHHHHCSE--EEECCCHHHHHHHHHHTCCEEECC-----CCHHHHH
T ss_pred --------ccccccceecccccccccccchhhhhhhhccceE--EEecCCcchHHHHHHhCCCeEEeccCCCCCcHHHHH
Confidence 111222222 23477888999985 68988988 99999999999999999999999973 589999
Q ss_pred HHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHH
Q 011765 392 AKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLK 463 (478)
Q Consensus 392 a~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~ 463 (478)
|+.+++.|+|..++..+ +|++.|.++|.++|+ |++.++++.+-++.+...+++++.++.+++..+
T Consensus 292 A~~l~~~G~a~~l~~~~----~~~~~L~~~i~~ll~---d~~~~~~m~~~a~~~~~~~aa~~ia~~i~~lar 356 (365)
T 3s2u_A 292 AEFLVRSGAGRLLPQKS----TGAAELAAQLSEVLM---HPETLRSMADQARSLAKPEATRTVVDACLEVAR 356 (365)
T ss_dssp HHHHHTTTSEEECCTTT----CCHHHHHHHHHHHHH---CTHHHHHHHHHHHHTCCTTHHHHHHHHHHHHC-
T ss_pred HHHHHHCCCEEEeecCC----CCHHHHHHHHHHHHC---CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc
Confidence 99999999999999887 899999999999999 888888888888888777766666666666554
No 21
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.96 E-value=6.4e-28 Score=209.95 Aligned_cols=165 Identities=19% Similarity=0.359 Sum_probs=140.8
Q ss_pred CCChhhHhhhcccCCCCceEEEEeCcccC-CCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCc
Q 011765 261 TDTWRSIKEWLDEQEKGSVVYVAFGSEAK-PSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRG 339 (478)
Q Consensus 261 ~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n 339 (478)
.+.++++.+|++..+++++|||++||... ...+.+..+++++++.+.+++|+.++. ....+++ |
T Consensus 5 ~~l~~~~~~~l~~~~~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~~~~~~~~~g~~------~~~~~~~---------~ 69 (170)
T 2o6l_A 5 KPLPKEMEDFVQSSGENGVVVFSLGSMVSNMTEERANVIASALAQIPQKVLWRFDGN------KPDTLGL---------N 69 (170)
T ss_dssp CCCCHHHHHHHHTTTTTCEEEEECCSCCTTCCHHHHHHHHHHHTTSSSEEEEECCSS------CCTTCCT---------T
T ss_pred CCCCHHHHHHHHcCCCCCEEEEECCCCcccCCHHHHHHHHHHHHhCCCeEEEEECCc------CcccCCC---------c
Confidence 34578899999887777899999999863 466888889999998889999998653 1223333 8
Q ss_pred EEEeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHH
Q 011765 340 VVYTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVA 419 (478)
Q Consensus 340 ~~~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~ 419 (478)
+.+..|+|+.+++.++.+++||||||+||++||+++|+|+|++|...||..||+++++.|+|+.++..+ ++.++|.
T Consensus 70 v~~~~~~~~~~~l~~~~ad~~I~~~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~----~~~~~l~ 145 (170)
T 2o6l_A 70 TRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNT----MSSTDLL 145 (170)
T ss_dssp EEEESSCCHHHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTTSEEECCTTT----CCHHHHH
T ss_pred EEEecCCCHHHHhcCCCcCEEEEcCCccHHHHHHHcCCCEEeccchhhHHHHHHHHHHcCCeEEecccc----CCHHHHH
Confidence 999999999999977777779999999999999999999999999999999999999999999998776 8999999
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHHhcc
Q 011765 420 ESLRLVLVEEKGQIYRDKAKEMKGLFGD 447 (478)
Q Consensus 420 ~~i~~ll~~~~~~~~~~~a~~~~~~~~~ 447 (478)
++|.++++ |++|+++++++++.+++
T Consensus 146 ~~i~~ll~---~~~~~~~a~~~~~~~~~ 170 (170)
T 2o6l_A 146 NALKRVIN---DPSYKENVMKLSRIQHD 170 (170)
T ss_dssp HHHHHHHH---CHHHHHHHHHHC-----
T ss_pred HHHHHHHc---CHHHHHHHHHHHHHhhC
Confidence 99999999 89999999999988753
No 22
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.90 E-value=8.3e-22 Score=192.85 Aligned_cols=342 Identities=16% Similarity=0.079 Sum_probs=214.6
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCcc--ccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNI--DRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDL 83 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~--~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~ 83 (478)
+|||++++.+..||..+++.||++|+++||+|++++..... +.+...| +++..++.. .+... .
T Consensus 6 ~mkIl~~~~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~g------~~~~~~~~~---~~~~~------~ 70 (364)
T 1f0k_A 6 GKRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADRMEADLVPKHG------IEIDFIRIS---GLRGK------G 70 (364)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHHHHTTTCEEEEEECTTSTHHHHGGGGT------CEEEECCCC---CCTTC------C
T ss_pred CcEEEEEeCCCccchhHHHHHHHHHHHcCCEEEEEecCCcchhhhccccC------CceEEecCC---ccCcC------c
Confidence 38999999777799999999999999999999999976532 2233334 777777531 11110 0
Q ss_pred ChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCc--ccHHHHHHHhCCCeEEEecchHHHHHhhccccccccccCCC
Q 011765 84 PYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAA--YWLPARARELGIPSGFFSIFTAATLGYFGPSSVLINDSGDH 161 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~--~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (478)
....+....... .....+.+++++.+||+|+++... ..+..+++.+|+|++......
T Consensus 71 ~~~~~~~~~~~~-~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~-------------------- 129 (364)
T 1f0k_A 71 IKALIAAPLRIF-NAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWSLGIPVVLHEQNG-------------------- 129 (364)
T ss_dssp HHHHHTCHHHHH-HHHHHHHHHHHHHCCSEEEECSSTTHHHHHHHHHHTTCCEEEEECSS--------------------
T ss_pred cHHHHHHHHHHH-HHHHHHHHHHHhcCCCEEEEeCCcCchHHHHHHHHcCCCEEEEecCC--------------------
Confidence 000000011111 123356677888899999998543 345677889999998642210
Q ss_pred CCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHhhcCCC
Q 011765 162 LKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQLHRKP 241 (478)
Q Consensus 162 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~~~~ 241 (478)
.+. . ...+ ..+.++.+++.+... ++ +
T Consensus 130 -------------~~~-----~----~~~~-------------------~~~~~d~v~~~~~~~------------~~-~ 155 (364)
T 1f0k_A 130 -------------IAG-----L----TNKW-------------------LAKIATKVMQAFPGA------------FP-N 155 (364)
T ss_dssp -------------SCC-----H----HHHH-------------------HTTTCSEEEESSTTS------------SS-S
T ss_pred -------------CCc-----H----HHHH-------------------HHHhCCEEEecChhh------------cC-C
Confidence 000 0 0000 012345555433211 22 4
Q ss_pred eeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhC--CCCEEEEEecCCCC
Q 011765 242 VIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELS--KLPFFWVLKKRLGQ 319 (478)
Q Consensus 242 ~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~ 319 (478)
+..+|.-..... .... .....+...+++++|+++.|+.. .......++++++.+ +.+++++++..
T Consensus 156 ~~~i~n~v~~~~-------~~~~-~~~~~~~~~~~~~~il~~~g~~~--~~k~~~~li~a~~~l~~~~~~l~i~G~~--- 222 (364)
T 1f0k_A 156 AEVVGNPVRTDV-------LALP-LPQQRLAGREGPVRVLVVGGSQG--ARILNQTMPQVAAKLGDSVTIWHQSGKG--- 222 (364)
T ss_dssp CEECCCCCCHHH-------HTSC-CHHHHHTTCCSSEEEEEECTTTC--CHHHHHHHHHHHHHHGGGEEEEEECCTT---
T ss_pred ceEeCCccchhh-------cccc-hhhhhcccCCCCcEEEEEcCchH--hHHHHHHHHHHHHHhcCCcEEEEEcCCc---
Confidence 556663221100 0000 01112222234557777778875 344444455666543 44555555432
Q ss_pred CCCCCCCCChhhhhh---cCCCcEEEeccCCh-hhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccc---cchhhHH
Q 011765 320 ADTEPIELPDGFEER---TRGRGVVYTSWAPQ-LAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCY---ADQGLNA 392 (478)
Q Consensus 320 ~~~~~~~~p~~~~~~---~~~~n~~~~~~vpq-~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~---~DQ~~na 392 (478)
. .+.+.+. ..-+++.+..|+++ .+++..+++ +|+++|.+++.||+++|+|+|+.|.. .||..|+
T Consensus 223 ---~----~~~l~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~--~v~~sg~~~~~EAma~G~Pvi~~~~~g~~~~q~~~~ 293 (364)
T 1f0k_A 223 ---S----QQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADV--VVCRSGALTVSEIAAAGLPALFVPFQHKDRQQYWNA 293 (364)
T ss_dssp ---C----HHHHHHHHHHTTCTTSEEESCCSCHHHHHHHCSE--EEECCCHHHHHHHHHHTCCEEECCCCCTTCHHHHHH
T ss_pred ---h----HHHHHHHHhhcCCCceEEecchhhHHHHHHhCCE--EEECCchHHHHHHHHhCCCEEEeeCCCCchhHHHHH
Confidence 1 1222221 12247889899954 678888888 99999999999999999999999987 7999999
Q ss_pred HHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHhcccc
Q 011765 393 KLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLKNHRCL 468 (478)
Q Consensus 393 ~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (478)
..+.+.|.|..++..+ ++.++|+++|.++ + ++.++++.+-++...+..+.++.++.+++.+++.-++
T Consensus 294 ~~~~~~g~g~~~~~~d----~~~~~la~~i~~l-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 360 (364)
T 1f0k_A 294 LPLEKAGAAKIIEQPQ----LSVDAVANTLAGW-S----RETLLTMAERARAASIPDATERVANEVSRVARALEHH 360 (364)
T ss_dssp HHHHHTTSEEECCGGG----CCHHHHHHHHHTC-C----HHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHTTC---
T ss_pred HHHHhCCcEEEecccc----CCHHHHHHHHHhc-C----HHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999998765 6799999999998 5 5566677666666666666788889999988766544
No 23
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=99.73 E-value=3.5e-16 Score=145.37 Aligned_cols=264 Identities=15% Similarity=0.116 Sum_probs=163.9
Q ss_pred cEEEEecC----CCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCC
Q 011765 7 LQIAMFPW----LAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATID 82 (478)
Q Consensus 7 ~~il~~~~----~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~ 82 (478)
|||+|-+- -+.||+.+++.||++|+ +|+|++.....+.+...| +.+..++ . . +
T Consensus 1 mki~ir~Da~~~IG~GHvmRcl~LA~~l~----~v~F~~~~~~~~~~~~~g------~~v~~l~----~---~------d 57 (282)
T 3hbm_A 1 MKVLFRSDSSSQIGFGHIKRDLVLAKQYS----DVSFACLPLEGSLIDEIP------YPVYELS----S---E------S 57 (282)
T ss_dssp CCEEEEECCBTTTBSHHHHHHHHHHTTCS----SEEEEECCCTTCCGGGCC------SCEEECS----S---S------C
T ss_pred CEEEEEEecCCCccccHHHHHHHHHHHHH----hCEEEEecCcHhHHHHCC------CeEEEcC----c---c------C
Confidence 67888543 36799999999999999 899999776555555444 5555553 1 0 0
Q ss_pred CChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcccHHHH---HHHhCCCeEEEecchHHHHHhhccccccccccC
Q 011765 83 LPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWLPAR---ARELGIPSGFFSIFTAATLGYFGPSSVLINDSG 159 (478)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~---A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (478)
...+.+++++.+||+||.|.+....... ....+++++.+--..
T Consensus 58 ----------------~~~~~~~l~~~~~d~lIvD~Y~~~~~~~~~lk~~~~~~i~~iDD~~------------------ 103 (282)
T 3hbm_A 58 ----------------IYELINLIKEEKFELLIIDHYGISVDDEKLIKLETGVKILSFDDEI------------------ 103 (282)
T ss_dssp ----------------HHHHHHHHHHHTCSEEEEECTTCCHHHHHHHHHHHCCEEEEECSSC------------------
T ss_pred ----------------HHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHHhcCcEEEEEecCC------------------
Confidence 1234566667799999999887755432 233577877661100
Q ss_pred CCCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHhhcC
Q 011765 160 DHLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQLHR 239 (478)
Q Consensus 160 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~~ 239 (478)
. ...+|+++=.+... +.. .+ ....|
T Consensus 104 --------------------------------------------------~-~~~~Dllin~~~~~-~~~--~Y-~~~~p 128 (282)
T 3hbm_A 104 --------------------------------------------------K-PHHCDILLNVNAYA-KAS--DY-EGLVP 128 (282)
T ss_dssp --------------------------------------------------C-CCCCSEEEECSTTC-CGG--GG-TTTCC
T ss_pred --------------------------------------------------C-cccCCEEEeCCccc-chh--hc-cccCC
Confidence 0 11234333222211 100 00 01112
Q ss_pred C-CeeeeccCCCCCCCCCCCCCCCChhhHhhhcc-cCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCC
Q 011765 240 K-PVIPVGQLPTTTGDGDSDAETDTWRSIKEWLD-EQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRL 317 (478)
Q Consensus 240 ~-~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~ 317 (478)
+ .....||=....+ ++..+.-. ..++.+.|+|++|.... ......++++|.... ++.++.+..
T Consensus 129 ~~~~~l~G~~Y~~lR-----------~eF~~~~~~~r~~~~~ILv~~GG~d~--~~l~~~vl~~L~~~~-~i~vv~G~~- 193 (282)
T 3hbm_A 129 FKCEVRCGFSYALIR-----------EEFYQEAKENRKKKYDFFICMGGTDI--KNLSLQIASELPKTK-IISIATSSS- 193 (282)
T ss_dssp -CCEEEESGGGCCCC-----------HHHHHHTTCCCCCCEEEEEECCSCCT--TCHHHHHHHHSCTTS-CEEEEECTT-
T ss_pred CCCeEeeCCcccccC-----------HHHHHhhhhccccCCeEEEEECCCch--hhHHHHHHHHhhcCC-CEEEEECCC-
Confidence 2 2456676222111 11111100 12234589999997543 345666888886544 555555432
Q ss_pred CCCCCCCCCCChhhhhhc-CCCcEEEeccCChh-hhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhhHHHHH
Q 011765 318 GQADTEPIELPDGFEERT-RGRGVVYTSWAPQL-AILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAKLL 395 (478)
Q Consensus 318 ~~~~~~~~~~p~~~~~~~-~~~n~~~~~~vpq~-~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v 395 (478)
....+.+.+.. ...|+.+..|+++. +++..+++ +||+|| +|++|+++.|+|+|++|+..+|..||+.+
T Consensus 194 -------~~~~~~l~~~~~~~~~v~v~~~~~~m~~~m~~aDl--vI~~gG-~T~~E~~~~g~P~i~ip~~~~Q~~nA~~l 263 (282)
T 3hbm_A 194 -------NPNLKKLQKFAKLHNNIRLFIDHENIAKLMNESNK--LIISAS-SLVNEALLLKANFKAICYVKNQESTATWL 263 (282)
T ss_dssp -------CTTHHHHHHHHHTCSSEEEEESCSCHHHHHHTEEE--EEEESS-HHHHHHHHTTCCEEEECCSGGGHHHHHHH
T ss_pred -------chHHHHHHHHHhhCCCEEEEeCHHHHHHHHHHCCE--EEECCc-HHHHHHHHcCCCEEEEeCCCCHHHHHHHH
Confidence 11223333222 23489999999886 58888888 999999 89999999999999999999999999999
Q ss_pred hhcCeEEEeecc
Q 011765 396 EEKQIVELIPRD 407 (478)
Q Consensus 396 ~~~g~G~~l~~~ 407 (478)
++.|++..+..-
T Consensus 264 ~~~G~~~~~~~~ 275 (282)
T 3hbm_A 264 AKKGYEVEYKYL 275 (282)
T ss_dssp HHTTCEEECGGG
T ss_pred HHCCCEEEcchh
Confidence 999999998763
No 24
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=99.62 E-value=9.4e-16 Score=136.60 Aligned_cols=139 Identities=15% Similarity=0.155 Sum_probs=96.2
Q ss_pred ccCCCCceEEEEeCcccCCCHHHHHHH-----HHHHHhCC-CCEEEEEecCCCCCCCCCCC-------------CChhh-
Q 011765 272 DEQEKGSVVYVAFGSEAKPSQEELTEI-----ALGLELSK-LPFFWVLKKRLGQADTEPIE-------------LPDGF- 331 (478)
Q Consensus 272 ~~~~~~~~v~vs~Gs~~~~~~~~~~~~-----~~al~~~~-~~~i~~~~~~~~~~~~~~~~-------------~p~~~- 331 (478)
...+++++|||+.||... -.+.+..+ +++|...+ .+++++++..... .... +|.+.
T Consensus 23 ~~~~~~~~VlVtgGS~~~-~n~li~~vl~~~~l~~L~~~~~~~vv~q~G~~~~~---~~~~~~~~~~~~~~~~l~p~~~~ 98 (224)
T 2jzc_A 23 EGIIEEKALFVTCGATVP-FPKLVSCVLSDEFCQELIQYGFVRLIIQFGRNYSS---EFEHLVQERGGQRESQKIPIDQF 98 (224)
T ss_dssp -CCCCSCCEEEECCSCCS-CHHHHHHHTSHHHHHHHHTTTCCCEEECCCSSSCC---CCCSHHHHHTCEECSCCCSSCTT
T ss_pred CCCCCCCEEEEEcCCchH-HHHHHHHHHHHHHHHHHhcCCCeEEEEEECCCchh---hHHHHHHhhhccccccccccccc
Confidence 333457899999999742 34444443 48887777 7888888754210 0000 11000
Q ss_pred -----hh----hcCCCcEEEeccCChh-hhhc-CCCceeeeeccChhhHHHHHHhCCcEeccccc----cchhhHHHHHh
Q 011765 332 -----EE----RTRGRGVVYTSWAPQL-AILA-HDSVGGFLTHAGWSSVVEALQFGMPLIVLTCY----ADQGLNAKLLE 396 (478)
Q Consensus 332 -----~~----~~~~~n~~~~~~vpq~-~vL~-~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~----~DQ~~na~~v~ 396 (478)
.+ ....-++.+++|+++. ++++ .+++ +|||||+||++|++++|+|+|++|.. .||..||++++
T Consensus 99 ~~~~~~~~~~~~~~~~~v~v~~f~~~m~~~l~~~Adl--vIshaGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~ 176 (224)
T 2jzc_A 99 GCGDTARQYVLMNGKLKVIGFDFSTKMQSIIRDYSDL--VISHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFV 176 (224)
T ss_dssp CTTCSCEEEESTTTSSEEEECCSSSSHHHHHHHHCSC--EEESSCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHH
T ss_pred cccccccccccccCCceEEEeeccchHHHHHHhcCCE--EEECCcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHH
Confidence 00 0011256678898885 7899 9999 99999999999999999999999974 47999999999
Q ss_pred hcCeEEEeeccCCCCcccHHHHHHHHHHH
Q 011765 397 EKQIVELIPRDEGDGFFTRNSVAESLRLV 425 (478)
Q Consensus 397 ~~g~G~~l~~~~~~~~~~~~~l~~~i~~l 425 (478)
+.|+|+.+ +.+.|.++|+++
T Consensus 177 ~~G~~~~~---------~~~~L~~~i~~l 196 (224)
T 2jzc_A 177 ELGYVWSC---------APTETGLIAGLR 196 (224)
T ss_dssp HHSCCCEE---------CSCTTTHHHHHH
T ss_pred HCCCEEEc---------CHHHHHHHHHHH
Confidence 99998765 345566677666
No 25
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=99.56 E-value=3.1e-12 Score=127.93 Aligned_cols=377 Identities=13% Similarity=0.045 Sum_probs=189.2
Q ss_pred CCccEEEEecC---C--------CccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCC
Q 011765 4 NSKLQIAMFPW---L--------AFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDN 72 (478)
Q Consensus 4 ~~~~~il~~~~---~--------~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~ 72 (478)
+++|||++++. | .-|+-..+..|++.|.++||+|++++.......... .....++.++.++......
T Consensus 18 ~~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~--~~~~~~v~v~~~~~~~~~~ 95 (438)
T 3c48_A 18 GSHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATRPSQGEI--VRVAENLRVINIAAGPYEG 95 (438)
T ss_dssp -CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTTCEEEEEEECCCGGGCSE--EEEETTEEEEEECCSCSSS
T ss_pred cchheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEecCCCCCCccc--ccccCCeEEEEecCCCccc
Confidence 45899999985 2 247788899999999999999999987653221110 0001347777776311111
Q ss_pred CCCCccccCCCChhHHHHHHHHHhhhhHHHHHH-Hhhc-CCCEEEEcCCcc--cHHHHHHHhCCCeEEEecchHHHHHhh
Q 011765 73 LRENAEATIDLPYDEVKYLKQSFDCLEEPMAKL-LQSL-APDWLLFDFAAY--WLPARARELGIPSGFFSIFTAATLGYF 148 (478)
Q Consensus 73 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-l~~~-~pD~vI~D~~~~--~~~~~A~~lgIP~i~~~~~~~~~~~~~ 148 (478)
+. ..... ..+.. +...+.+. ++.. +||+|++..... .+..+++.+++|+|............
T Consensus 96 ~~-----~~~~~----~~~~~----~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~- 161 (438)
T 3c48_A 96 LS-----KEELP----TQLAA----FTGGMLSFTRREKVTYDLIHSHYWLSGQVGWLLRDLWRIPLIHTAHTLAAVKNS- 161 (438)
T ss_dssp CC-----GGGGG----GGHHH----HHHHHHHHHHHHTCCCSEEEEEHHHHHHHHHHHHHHHTCCEEEECSSCHHHHSC-
T ss_pred cc-----hhHHH----HHHHH----HHHHHHHHHHhccCCCCEEEeCCccHHHHHHHHHHHcCCCEEEEecCCcccccc-
Confidence 00 00111 11111 11122222 4333 499999875322 34456788899998765533211100
Q ss_pred ccccccccccCCCCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccCh
Q 011765 149 GPSSVLINDSGDHLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEP 228 (478)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~ 228 (478)
...... .... .+. . .......+.+|.+++.+ .
T Consensus 162 -------------------------~~~~~~--~~~~----~~~----------~--~~~~~~~~~~d~ii~~s-----~ 193 (438)
T 3c48_A 162 -------------------------YRDDSD--TPES----EAR----------R--ICEQQLVDNADVLAVNT-----Q 193 (438)
T ss_dssp -------------------------C----C--CHHH----HHH----------H--HHHHHHHHHCSEEEESS-----H
T ss_pred -------------------------cccccC--Ccch----HHH----------H--HHHHHHHhcCCEEEEcC-----H
Confidence 000000 0000 000 0 00011244678888877 3
Q ss_pred HHHHHHHhhcC---CCeeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccC-CCHHHHHHHHHHHHh
Q 011765 229 EWLKLLEQLHR---KPVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAK-PSQEELTEIALGLEL 304 (478)
Q Consensus 229 ~~~~~~~~~~~---~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~al~~ 304 (478)
...+.+...++ .++..|..-.....-. . ......+.+++-+.-.. +..+++..|+... ...+.+.+.+..+.+
T Consensus 194 ~~~~~~~~~~g~~~~k~~vi~ngvd~~~~~-~-~~~~~~~~~r~~~~~~~-~~~~i~~~G~~~~~Kg~~~li~a~~~l~~ 270 (438)
T 3c48_A 194 EEMQDLMHHYDADPDRISVVSPGADVELYS-P-GNDRATERSRRELGIPL-HTKVVAFVGRLQPFKGPQVLIKAVAALFD 270 (438)
T ss_dssp HHHHHHHHHHCCCGGGEEECCCCCCTTTSC-C-C----CHHHHHHTTCCS-SSEEEEEESCBSGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChhheEEecCCccccccC-C-cccchhhhhHHhcCCCC-CCcEEEEEeeecccCCHHHHHHHHHHHHh
Confidence 33444444332 2355555322111100 0 00001111333333222 3366777888763 223444443333332
Q ss_pred C--CCCEEEEEecCCCCCCCCCCCCChhhhhh---cC-CCcEEEeccCChh---hhhcCCCceeeeec----cChhhHHH
Q 011765 305 S--KLPFFWVLKKRLGQADTEPIELPDGFEER---TR-GRGVVYTSWAPQL---AILAHDSVGGFLTH----AGWSSVVE 371 (478)
Q Consensus 305 ~--~~~~i~~~~~~~~~~~~~~~~~p~~~~~~---~~-~~n~~~~~~vpq~---~vL~~~~~~~~ItH----gG~~s~~e 371 (478)
. +..+.+++-+... ..+...+.+.+. .. .+++.+..|+|+. +++..+++ +|.- |..+++.|
T Consensus 271 ~~p~~~~~l~i~G~~~----~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~E 344 (438)
T 3c48_A 271 RDPDRNLRVIICGGPS----GPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADI--VAVPSFNESFGLVAME 344 (438)
T ss_dssp HCTTCSEEEEEECCBC----------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHHCSE--EEECCSCCSSCHHHHH
T ss_pred hCCCcceEEEEEeCCC----CCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHhCCE--EEECccccCCchHHHH
Confidence 2 2233333222100 001111222221 11 3589999999874 56777888 6643 33468999
Q ss_pred HHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCCh
Q 011765 372 ALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRH 451 (478)
Q Consensus 372 al~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 451 (478)
|+++|+|+|+.+. ......+.+.+.|..++.. +.++++++|.++++ |++.++++.+-+......-..
T Consensus 345 ama~G~PvI~~~~----~~~~e~i~~~~~g~~~~~~------d~~~la~~i~~l~~---~~~~~~~~~~~~~~~~~~~s~ 411 (438)
T 3c48_A 345 AQASGTPVIAARV----GGLPIAVAEGETGLLVDGH------SPHAWADALATLLD---DDETRIRMGEDAVEHARTFSW 411 (438)
T ss_dssp HHHTTCCEEEESC----TTHHHHSCBTTTEEEESSC------CHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCEEecCC----CChhHHhhCCCcEEECCCC------CHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHhCCH
Confidence 9999999999653 4555666666788888653 78999999999999 666655544433333222223
Q ss_pred HHHHHHHHHHHHhcc
Q 011765 452 DRYVDNFLNYLKNHR 466 (478)
Q Consensus 452 ~~~~~~i~~~~~~~~ 466 (478)
+..++.+++.+++..
T Consensus 412 ~~~~~~~~~~~~~~~ 426 (438)
T 3c48_A 412 AATAAQLSSLYNDAI 426 (438)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 455566666665444
No 26
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=99.55 E-value=8.9e-12 Score=123.09 Aligned_cols=351 Identities=12% Similarity=0.028 Sum_probs=191.4
Q ss_pred CCCccEEEEecCC---C-ccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCcc
Q 011765 3 DNSKLQIAMFPWL---A-FGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAE 78 (478)
Q Consensus 3 ~~~~~~il~~~~~---~-~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~ 78 (478)
..++|||++++.. . .|+-..+..+++.|.++||+|++++............. ....+..++. ..
T Consensus 17 ~~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~---~~~~~~~~~~--------~~- 84 (406)
T 2gek_A 17 RGSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLPDYVV---SGGKAVPIPY--------NG- 84 (406)
T ss_dssp ----CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSCCCTTEE---ECCCCC---------------
T ss_pred CCCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCccccCCcccc---cCCcEEeccc--------cC-
Confidence 3568999998742 2 46668899999999999999999998765431111100 0001111110 00
Q ss_pred ccCCCChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcc--cHHHHHHHhCCCeEEEecchHHHHHhhcccccccc
Q 011765 79 ATIDLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAY--WLPARARELGIPSGFFSIFTAATLGYFGPSSVLIN 156 (478)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~--~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~ 156 (478)
..... .........+.+++++.+||+|++..... .+..++..+++|+|.......
T Consensus 85 ~~~~~---------~~~~~~~~~l~~~l~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~-------------- 141 (406)
T 2gek_A 85 SVARL---------RFGPATHRKVKKWIAEGDFDVLHIHEPNAPSLSMLALQAAEGPIVATFHTST-------------- 141 (406)
T ss_dssp ---------------CCHHHHHHHHHHHHHHCCSEEEEECCCSSSHHHHHHHHEESSEEEEECCCC--------------
T ss_pred Ccccc---------cccHHHHHHHHHHHHhcCCCEEEECCccchHHHHHHHHhcCCCEEEEEcCcc--------------
Confidence 00000 00001224566777788999999875433 245667778999997644210
Q ss_pred ccCCCCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHh
Q 011765 157 DSGDHLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQ 236 (478)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~ 236 (478)
+. ......+. . .+....+.+|.+++.+ ....+.+..
T Consensus 142 -------------------~~-------~~~~~~~~---~----------~~~~~~~~~d~ii~~s-----~~~~~~~~~ 177 (406)
T 2gek_A 142 -------------------TK-------SLTLSVFQ---G----------ILRPYHEKIIGRIAVS-----DLARRWQME 177 (406)
T ss_dssp -------------------CS-------HHHHHHHH---S----------TTHHHHTTCSEEEESS-----HHHHHHHHH
T ss_pred -------------------hh-------hhhHHHHH---H----------HHHHHHhhCCEEEECC-----HHHHHHHHH
Confidence 00 00000000 0 0112345678888877 333444444
Q ss_pred hcCCCeeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcc-cC-CCHHHHHHHHHHHHhC--CCCEEEE
Q 011765 237 LHRKPVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSE-AK-PSQEELTEIALGLELS--KLPFFWV 312 (478)
Q Consensus 237 ~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~-~~-~~~~~~~~~~~al~~~--~~~~i~~ 312 (478)
.++.+-..+..-....... . .... ....++..+++..|+. .. ...+.+.+.+..+.+. +.+++++
T Consensus 178 ~~~~~~~vi~~~v~~~~~~-~---~~~~-------~~~~~~~~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~ 246 (406)
T 2gek_A 178 ALGSDAVEIPNGVDVASFA-D---APLL-------DGYPREGRTVLFLGRYDEPRKGMAVLLAALPKLVARFPDVEILIV 246 (406)
T ss_dssp HHSSCEEECCCCBCHHHHH-T---CCCC-------TTCSCSSCEEEEESCTTSGGGCHHHHHHHHHHHHTTSTTCEEEEE
T ss_pred hcCCCcEEecCCCChhhcC-C---Cchh-------hhccCCCeEEEEEeeeCccccCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4543322333211100000 0 0000 0001122567778887 42 2334444444444332 3443333
Q ss_pred EecCCCCCCCCCCCCChhhhhhcC--CCcEEEeccCChh---hhhcCCCceeeee----ccCh-hhHHHHHHhCCcEecc
Q 011765 313 LKKRLGQADTEPIELPDGFEERTR--GRGVVYTSWAPQL---AILAHDSVGGFLT----HAGW-SSVVEALQFGMPLIVL 382 (478)
Q Consensus 313 ~~~~~~~~~~~~~~~p~~~~~~~~--~~n~~~~~~vpq~---~vL~~~~~~~~It----HgG~-~s~~eal~~GvP~l~~ 382 (478)
+.. .. +.+.+..+ .+++.+..++++. +++..+++ +|. +.|+ +++.||+++|+|+|+.
T Consensus 247 -G~~---------~~-~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~~e~~~~~~~Ea~a~G~PvI~~ 313 (406)
T 2gek_A 247 -GRG---------DE-DELREQAGDLAGHLRFLGQVDDATKASAMRSADV--YCAPHLGGESFGIVLVEAMAAGTAVVAS 313 (406)
T ss_dssp -SCS---------CH-HHHHHHTGGGGGGEEECCSCCHHHHHHHHHHSSE--EEECCCSCCSSCHHHHHHHHHTCEEEEC
T ss_pred -cCC---------cH-HHHHHHHHhccCcEEEEecCCHHHHHHHHHHCCE--EEecCCCCCCCchHHHHHHHcCCCEEEe
Confidence 221 11 23332222 4689999999985 67788888 653 3444 5999999999999996
Q ss_pred ccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHH
Q 011765 383 TCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYL 462 (478)
Q Consensus 383 P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~ 462 (478)
+. ......+.+.+.|...+.. +.+++.++|.++++ +++.++++.+-+......-+.+..++.+++.+
T Consensus 314 ~~----~~~~e~i~~~~~g~~~~~~------d~~~l~~~i~~l~~---~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 380 (406)
T 2gek_A 314 DL----DAFRRVLADGDAGRLVPVD------DADGMAAALIGILE---DDQLRAGYVARASERVHRYDWSVVSAQIMRVY 380 (406)
T ss_dssp CC----HHHHHHHTTTTSSEECCTT------CHHHHHHHHHHHHH---CHHHHHHHHHHHHHHGGGGBHHHHHHHHHHHH
T ss_pred cC----CcHHHHhcCCCceEEeCCC------CHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55 5566667766778877654 78999999999999 77766665554444444555567778888877
Q ss_pred HhccccC
Q 011765 463 KNHRCLR 469 (478)
Q Consensus 463 ~~~~~~~ 469 (478)
++.....
T Consensus 381 ~~~~~~~ 387 (406)
T 2gek_A 381 ETVSGAG 387 (406)
T ss_dssp HHHCCTT
T ss_pred HHHHhhc
Confidence 7655433
No 27
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.55 E-value=1.8e-13 Score=134.13 Aligned_cols=108 Identities=17% Similarity=0.160 Sum_probs=76.1
Q ss_pred CcEEEeccCCh---hhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCccc
Q 011765 338 RGVVYTSWAPQ---LAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFT 414 (478)
Q Consensus 338 ~n~~~~~~vpq---~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~ 414 (478)
+++.+.++++. .++++.+++ ||+..| |.+.||+++|+|+|+.+...++.. +.+.|.|..++ .+
T Consensus 255 ~~v~~~g~~g~~~~~~~~~~ad~--~v~~S~-g~~lEA~a~G~PvI~~~~~~~~~~----~~~~g~g~lv~-------~d 320 (376)
T 1v4v_A 255 RNFVLLDPLEYGSMAALMRASLL--LVTDSG-GLQEEGAALGVPVVVLRNVTERPE----GLKAGILKLAG-------TD 320 (376)
T ss_dssp TTEEEECCCCHHHHHHHHHTEEE--EEESCH-HHHHHHHHTTCCEEECSSSCSCHH----HHHHTSEEECC-------SC
T ss_pred CCEEEECCCCHHHHHHHHHhCcE--EEECCc-CHHHHHHHcCCCEEeccCCCcchh----hhcCCceEECC-------CC
Confidence 57888866655 468888888 998873 446699999999999886666655 34568887774 27
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHH
Q 011765 415 RNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYL 462 (478)
Q Consensus 415 ~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~ 462 (478)
.++|.++|.++++ |++.++++.+.++.+.+...+++.++.+.+.+
T Consensus 321 ~~~la~~i~~ll~---d~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~ 365 (376)
T 1v4v_A 321 PEGVYRVVKGLLE---NPEELSRMRKAKNPYGDGKAGLMVARGVAWRL 365 (376)
T ss_dssp HHHHHHHHHHHHT---CHHHHHHHHHSCCSSCCSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh---ChHhhhhhcccCCCCCCChHHHHHHHHHHHHh
Confidence 8999999999999 77777666654444444444445555444433
No 28
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=99.51 E-value=6.6e-12 Score=123.45 Aligned_cols=349 Identities=12% Similarity=0.037 Sum_probs=194.7
Q ss_pred CccEEEEecC--C--CccCHHHHHHHHHHHHhCCCeEEEEeCCCccc----cCCCCCCCCCCCeEEEEecCCCCCCCCCC
Q 011765 5 SKLQIAMFPW--L--AFGHMIPWLELAKLIAQKGHKIFFISTPRNID----RLPRLPQNLASMIQFVKISLPHVDNLREN 76 (478)
Q Consensus 5 ~~~~il~~~~--~--~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~----~~~~~g~~~~~~i~~~~i~~~~~~~l~~~ 76 (478)
++|||++++. + ..|.-..+..|++.| +||+|++++...... ..... ++.+..++. ..
T Consensus 3 ~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L--~g~~v~v~~~~~~~~~~~~~~~~~------~~~~~~~~~----~~--- 67 (394)
T 3okp_A 3 ASRKTLVVTNDFPPRIGGIQSYLRDFIATQ--DPESIVVFASTQNAEEAHAYDKTL------DYEVIRWPR----SV--- 67 (394)
T ss_dssp -CCCEEEEESCCTTSCSHHHHHHHHHHTTS--CGGGEEEEEECSSHHHHHHHHTTC------SSEEEEESS----SS---
T ss_pred CCceEEEEeCccCCccchHHHHHHHHHHHh--cCCeEEEEECCCCccchhhhcccc------ceEEEEccc----cc---
Confidence 4899999864 3 348888899999999 799999999876543 11222 377777752 10
Q ss_pred ccccCCCChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcc--cHHHHHHHhCCCeEEEecchHHHHHhhcccccc
Q 011765 77 AEATIDLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAY--WLPARARELGIPSGFFSIFTAATLGYFGPSSVL 154 (478)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~--~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~ 154 (478)
.... ......+.+++++.+||+|++....+ ....+++.+++|.+++.........
T Consensus 68 -----~~~~----------~~~~~~l~~~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~-------- 124 (394)
T 3okp_A 68 -----MLPT----------PTTAHAMAEIIREREIDNVWFGAAAPLALMAGTAKQAGASKVIASTHGHEVGW-------- 124 (394)
T ss_dssp -----CCSC----------HHHHHHHHHHHHHTTCSEEEESSCTTGGGGHHHHHHTTCSEEEEECCSTHHHH--------
T ss_pred -----cccc----------hhhHHHHHHHHHhcCCCEEEECCcchHHHHHHHHHhcCCCcEEEEeccchhhh--------
Confidence 0000 02234667778888999999865433 3455688899995543221110000
Q ss_pred ccccCCCCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHH
Q 011765 155 INDSGDHLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLL 234 (478)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~ 234 (478)
.. . .+ . ........+.+|.++..| ....+.+
T Consensus 125 --------------------~~------~------~~----------~--~~~~~~~~~~~d~ii~~s-----~~~~~~~ 155 (394)
T 3okp_A 125 --------------------SM------L------PG----------S--RQSLRKIGTEVDVLTYIS-----QYTLRRF 155 (394)
T ss_dssp --------------------TT------S------HH----------H--HHHHHHHHHHCSEEEESC-----HHHHHHH
T ss_pred --------------------hh------c------ch----------h--hHHHHHHHHhCCEEEEcC-----HHHHHHH
Confidence 00 0 00 0 000111234668788877 4444444
Q ss_pred HhhcC--CCeeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccC-CCHHHHHHHHHHHHhC--CCCE
Q 011765 235 EQLHR--KPVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAK-PSQEELTEIALGLELS--KLPF 309 (478)
Q Consensus 235 ~~~~~--~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~al~~~--~~~~ 309 (478)
...++ .++..+..-.....-. . .......++.+.+.-.+ +..+++..|+... ...+.+.+.+..+.+. +.++
T Consensus 156 ~~~~~~~~~~~vi~ngv~~~~~~-~-~~~~~~~~~~~~~~~~~-~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~~l 232 (394)
T 3okp_A 156 KSAFGSHPTFEHLPSGVDVKRFT-P-ATPEDKSATRKKLGFTD-TTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQL 232 (394)
T ss_dssp HHHHCSSSEEEECCCCBCTTTSC-C-CCHHHHHHHHHHTTCCT-TCCEEEEESCSCGGGCHHHHHHHHHHHHHHSTTCEE
T ss_pred HHhcCCCCCeEEecCCcCHHHcC-C-CCchhhHHHHHhcCCCc-CceEEEEEeccccccCHHHHHHHHHHHHhhCCCeEE
Confidence 44442 2455555222111100 0 00111233344443333 3367777888653 2234444444444332 4444
Q ss_pred EEEEecCCCCCCCCCCCCChhhhhhc--CCCcEEEeccCChhh---hhcCCCceeeee-----------ccChhhHHHHH
Q 011765 310 FWVLKKRLGQADTEPIELPDGFEERT--RGRGVVYTSWAPQLA---ILAHDSVGGFLT-----------HAGWSSVVEAL 373 (478)
Q Consensus 310 i~~~~~~~~~~~~~~~~~p~~~~~~~--~~~n~~~~~~vpq~~---vL~~~~~~~~It-----------HgG~~s~~eal 373 (478)
+++ +.+ ...+.+.+.. ..+++.+..|+|+.+ ++..+++ +|. -|.-+++.||+
T Consensus 233 ~i~-G~g---------~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~--~v~ps~~~~~~~~~e~~~~~~~Ea~ 300 (394)
T 3okp_A 233 LIV-GSG---------RYESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADI--FAMPARTRGGGLDVEGLGIVYLEAQ 300 (394)
T ss_dssp EEE-CCC---------TTHHHHHHHTGGGGGGEEEEESCCHHHHHHHHHHCSE--EEECCCCBGGGTBCCSSCHHHHHHH
T ss_pred EEE-cCc---------hHHHHHHHHHhcccCeEEEcCCCCHHHHHHHHHhCCE--EEecCccccccccccccCcHHHHHH
Confidence 443 221 1112222211 135899999998644 6777888 665 45567999999
Q ss_pred HhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHH-hcccCChH
Q 011765 374 QFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGL-FGDKGRHD 452 (478)
Q Consensus 374 ~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~ 452 (478)
++|+|+|+.+..+ ....+.+ |.|...+.. +.+++.++|.++++ |++.++++.+-+.. ..+.-..+
T Consensus 301 a~G~PvI~~~~~~----~~e~i~~-~~g~~~~~~------d~~~l~~~i~~l~~---~~~~~~~~~~~~~~~~~~~~s~~ 366 (394)
T 3okp_A 301 ACGVPVIAGTSGG----APETVTP-ATGLVVEGS------DVDKLSELLIELLD---DPIRRAAMGAAGRAHVEAEWSWE 366 (394)
T ss_dssp HTTCCEEECSSTT----GGGGCCT-TTEEECCTT------CHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHHTBHH
T ss_pred HcCCCEEEeCCCC----hHHHHhc-CCceEeCCC------CHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHhCCHH
Confidence 9999999976532 2223333 478777654 89999999999999 66655555444333 33334567
Q ss_pred HHHHHHHHHHHhccccC
Q 011765 453 RYVDNFLNYLKNHRCLR 469 (478)
Q Consensus 453 ~~~~~i~~~~~~~~~~~ 469 (478)
..++.+++.+++..++.
T Consensus 367 ~~~~~~~~~~~~~~r~~ 383 (394)
T 3okp_A 367 IMGERLTNILQSEPRKL 383 (394)
T ss_dssp HHHHHHHHHHHSCCC--
T ss_pred HHHHHHHHHHHHhccCc
Confidence 78888888888776544
No 29
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=99.49 E-value=1.4e-11 Score=121.44 Aligned_cols=356 Identities=16% Similarity=0.117 Sum_probs=188.4
Q ss_pred ccEEEEecCCCc-cCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCC
Q 011765 6 KLQIAMFPWLAF-GHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLP 84 (478)
Q Consensus 6 ~~~il~~~~~~~-gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~ 84 (478)
++++....+|.. |.-..+..|+++|+++||+|++++....... .. ..+++.+..++... ++. .....
T Consensus 15 ~~~~~~~~~p~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~-~~----~~~~i~~~~~~~~~---~~~----~~~~~ 82 (394)
T 2jjm_A 15 KLKIGITCYPSVGGSGVVGTELGKQLAERGHEIHFITSGLPFRL-NK----VYPNIYFHEVTVNQ---YSV----FQYPP 82 (394)
T ss_dssp CCEEEEECCC--CHHHHHHHHHHHHHHHTTCEEEEECSSCC-----C----CCTTEEEECCCCC-----------CCSCC
T ss_pred eeeeehhcCCCCCCHHHHHHHHHHHHHhCCCEEEEEeCCCCCcc-cc----cCCceEEEeccccc---ccc----ccccc
Confidence 568888888765 6677788999999999999999997643221 11 11347766654211 100 00111
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCccc--HHHHHH-Hh--CCCeEEEecchHHHHHhhccccccccccC
Q 011765 85 YDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYW--LPARAR-EL--GIPSGFFSIFTAATLGYFGPSSVLINDSG 159 (478)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~--~~~~A~-~l--gIP~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (478)
. .. .....+.+++++.+||+|++....+. ...++. .+ ++|+|......... ...
T Consensus 83 ~-~~--------~~~~~l~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~--~~~---------- 141 (394)
T 2jjm_A 83 Y-DL--------ALASKMAEVAQRENLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDIT--VLG---------- 141 (394)
T ss_dssp H-HH--------HHHHHHHHHHHHHTCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECCHHHHH--TTT----------
T ss_pred c-cH--------HHHHHHHHHHHHcCCCEEEEcchhHHHHHHHHHHHhhcCCCCEEEEEecCccc--ccC----------
Confidence 0 00 12235666777889999998743332 233444 33 59988765432110 000
Q ss_pred CCCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHHhhcC
Q 011765 160 DHLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLEQLHR 239 (478)
Q Consensus 160 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~~ 239 (478)
..+. +. . .....++.+|.++..+ ....+.+...++
T Consensus 142 --------------~~~~-----~~-----~----------------~~~~~~~~ad~ii~~s-----~~~~~~~~~~~~ 176 (394)
T 2jjm_A 142 --------------SDPS-----LN-----N----------------LIRFGIEQSDVVTAVS-----HSLINETHELVK 176 (394)
T ss_dssp --------------TCTT-----TH-----H----------------HHHHHHHHSSEEEESC-----HHHHHHHHHHTC
T ss_pred --------------CCHH-----HH-----H----------------HHHHHHhhCCEEEECC-----HHHHHHHHHhhC
Confidence 0000 00 0 0011234567777776 444444444443
Q ss_pred --CCeeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccC-CCHHHHHHHHHHHHh-CCCCEEEEEec
Q 011765 240 --KPVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAK-PSQEELTEIALGLEL-SKLPFFWVLKK 315 (478)
Q Consensus 240 --~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~al~~-~~~~~i~~~~~ 315 (478)
.++..+..-....... .....++.+-+...+ +..+++..|+... ...+.+.+.+..+.+ .+.+++++ +.
T Consensus 177 ~~~~~~vi~ngv~~~~~~-----~~~~~~~~~~~~~~~-~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~l~i~-G~ 249 (394)
T 2jjm_A 177 PNKDIQTVYNFIDERVYF-----KRDMTQLKKEYGISE-SEKILIHISNFRKVKRVQDVVQAFAKIVTEVDAKLLLV-GD 249 (394)
T ss_dssp CSSCEEECCCCCCTTTCC-----CCCCHHHHHHTTCC----CEEEEECCCCGGGTHHHHHHHHHHHHHSSCCEEEEE-CC
T ss_pred CcccEEEecCCccHHhcC-----CcchHHHHHHcCCCC-CCeEEEEeeccccccCHHHHHHHHHHHHhhCCCEEEEE-CC
Confidence 3566665322211100 111223333332212 2356667788663 223333333333332 24444333 32
Q ss_pred CCCCCCCCCCCCChhhhhhcC----CCcEEEeccCCh-hhhhcCCCceeee----eccChhhHHHHHHhCCcEecccccc
Q 011765 316 RLGQADTEPIELPDGFEERTR----GRGVVYTSWAPQ-LAILAHDSVGGFL----THAGWSSVVEALQFGMPLIVLTCYA 386 (478)
Q Consensus 316 ~~~~~~~~~~~~p~~~~~~~~----~~n~~~~~~vpq-~~vL~~~~~~~~I----tHgG~~s~~eal~~GvP~l~~P~~~ 386 (478)
+ ...+.+.+..+ .+++.+..+..+ .+++..+++ +| .-|..+++.||+++|+|+|+.+..
T Consensus 250 g---------~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv--~v~ps~~e~~~~~~~EAma~G~PvI~~~~~- 317 (394)
T 2jjm_A 250 G---------PEFCTILQLVKNLHIEDRVLFLGKQDNVAELLAMSDL--MLLLSEKESFGLVLLEAMACGVPCIGTRVG- 317 (394)
T ss_dssp C---------TTHHHHHHHHHTTTCGGGBCCCBSCSCTHHHHHTCSE--EEECCSCCSCCHHHHHHHHTTCCEEEECCT-
T ss_pred c---------hHHHHHHHHHHHcCCCCeEEEeCchhhHHHHHHhCCE--EEeccccCCCchHHHHHHhcCCCEEEecCC-
Confidence 1 11122222111 246777666544 568888888 77 445567999999999999997653
Q ss_pred chhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhc-ccCChHHHHHHHHHHHHhc
Q 011765 387 DQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFG-DKGRHDRYVDNFLNYLKNH 465 (478)
Q Consensus 387 DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~i~~~~~~~ 465 (478)
.....+.+.+.|...+.. +.++++++|.++++ |++.++++.+-+.... +.-..++.++.+++.+++.
T Consensus 318 ---~~~e~v~~~~~g~~~~~~------d~~~la~~i~~l~~---~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 385 (394)
T 2jjm_A 318 ---GIPEVIQHGDTGYLCEVG------DTTGVADQAIQLLK---DEELHRNMGERARESVYEQFRSEKIVSQYETIYYDV 385 (394)
T ss_dssp ---TSTTTCCBTTTEEEECTT------CHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred ---ChHHHhhcCCceEEeCCC------CHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 233344445678877653 78999999999999 6665555444433333 4555667788888888776
Q ss_pred cccCC
Q 011765 466 RCLRK 470 (478)
Q Consensus 466 ~~~~~ 470 (478)
..++.
T Consensus 386 ~~~~~ 390 (394)
T 2jjm_A 386 LRDDK 390 (394)
T ss_dssp C----
T ss_pred Hhhhh
Confidence 65543
No 30
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=99.48 E-value=3.9e-11 Score=119.67 Aligned_cols=385 Identities=12% Similarity=0.025 Sum_probs=192.2
Q ss_pred CccEEEEecCC----C-ccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCC------CC--------CCCCCCeEEEEe
Q 011765 5 SKLQIAMFPWL----A-FGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPR------LP--------QNLASMIQFVKI 65 (478)
Q Consensus 5 ~~~~il~~~~~----~-~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~------~g--------~~~~~~i~~~~i 65 (478)
++|||++++.. . .|--.-+..||++|+++||+|+++++......-.. .+ .....++.+..+
T Consensus 1 r~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~ 80 (439)
T 3fro_A 1 RHMKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEEIGKIRVFGEEVQVKVSYEERGNLRIYRI 80 (439)
T ss_dssp CCCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEEECTTCSCCEEEEEEEETTEEEEEEEEEEEETTEEEEEE
T ss_pred CceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCeEEEEecCCCCchhhhhccccccCcccceeeeeccCCCceEEEe
Confidence 47999998743 3 35556689999999999999999996543321100 00 001133677766
Q ss_pred cCCCCCCCCCCccccCCCChhHHHH----HHHHHhhhhHHHHHHHh-hcCCCEEEEcCCcc--cHHHHHHHhCCCeEEEe
Q 011765 66 SLPHVDNLRENAEATIDLPYDEVKY----LKQSFDCLEEPMAKLLQ-SLAPDWLLFDFAAY--WLPARARELGIPSGFFS 138 (478)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~ll~-~~~pD~vI~D~~~~--~~~~~A~~lgIP~i~~~ 138 (478)
+. .+ ... .......... +......+...+..++. ..+||+|.+..... .+..+++..++|+|...
T Consensus 81 ~~----~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~v~~~ 152 (439)
T 3fro_A 81 GG----GL---LDS-EDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWHTVFAGALIKKYFKIPAVFTI 152 (439)
T ss_dssp ES----GG---GGC-SSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSEEEEESGGGHHHHHHHHHHHCCCEEEEE
T ss_pred cc----hh---ccc-cccccCCcchhhhhhHHHHHHHHHHHHHHhccCCCCeEEEecchhhhhhHHHHhhccCCCEEEEe
Confidence 52 10 000 0111101222 22222223333333332 56999999875433 24566788899999765
Q ss_pred cchHHHHHhhccccccccccCCCCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEE
Q 011765 139 IFTAATLGYFGPSSVLINDSGDHLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIV 218 (478)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (478)
..... ..++.. .+.. ..+.. ... ..........+..+|.+
T Consensus 153 h~~~~-----------------------------~~~~~~---~~~~---~~~~~-~~~----~~~~~~~~~~~~~ad~i 192 (439)
T 3fro_A 153 HRLNK-----------------------------SKLPAF---YFHE---AGLSE-LAP----YPDIDPEHTGGYIADIV 192 (439)
T ss_dssp SCCCC-----------------------------CCEEHH---HHHH---TTCGG-GCC----SSEECHHHHHHHHCSEE
T ss_pred ccccc-----------------------------ccCchH---HhCc---ccccc-ccc----cceeeHhhhhhhhccEE
Confidence 42210 000000 0000 00000 000 00001112224467777
Q ss_pred EEcCcCccChHHHHHHHh---hcCCCeeeecc-CCCCCCCCCCC--CCCCChhhHhhhcccCCCCceEEEEeCccc-C-C
Q 011765 219 AVRSCMEFEPEWLKLLEQ---LHRKPVIPVGQ-LPTTTGDGDSD--AETDTWRSIKEWLDEQEKGSVVYVAFGSEA-K-P 290 (478)
Q Consensus 219 l~ns~~~le~~~~~~~~~---~~~~~~~~vGp-~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~-~-~ 290 (478)
+..|.. ..+.... ..+.++..|.. +....-..... .......++.+-+.-. ++ .+++..|+.. . .
T Consensus 193 i~~S~~-----~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~i~~~G~~~~~~K 265 (439)
T 3fro_A 193 TTVSRG-----YLIDEWGFFRNFEGKITYVFNGIDCSFWNESYLTGSRDERKKSLLSKFGMD-EG-VTFMFIGRFDRGQK 265 (439)
T ss_dssp EESCHH-----HHHHTHHHHGGGTTSEEECCCCCCTTTSCGGGSCSCHHHHHHHHHHHHTCC-SC-EEEEEECCSSCTTB
T ss_pred EecCHH-----HHHHHhhhhhhcCCceeecCCCCCchhcCcccccchhhhhHHHHHHHcCCC-CC-cEEEEEcccccccc
Confidence 777732 2222111 12334554442 21111000000 0001122333333332 33 7778888877 3 3
Q ss_pred CHHHHHHHHHHHHhCC--CCEEEEEecCCCCCCCCCCCCChhh---hhhcCCCcEEEeccCChhh---hhcCCCceeeee
Q 011765 291 SQEELTEIALGLELSK--LPFFWVLKKRLGQADTEPIELPDGF---EERTRGRGVVYTSWAPQLA---ILAHDSVGGFLT 362 (478)
Q Consensus 291 ~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~~~p~~~---~~~~~~~n~~~~~~vpq~~---vL~~~~~~~~It 362 (478)
+.+.+.+.+..+.... ..+-+++-+. ......+.+ .++.. +++.+..|+++.+ ++..+++ +|.
T Consensus 266 g~~~li~a~~~l~~~~~~~~~~l~i~G~------g~~~~~~~l~~~~~~~~-~~~~~~g~~~~~~~~~~~~~adv--~v~ 336 (439)
T 3fro_A 266 GVDVLLKAIEILSSKKEFQEMRFIIIGK------GDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYGSVDF--VII 336 (439)
T ss_dssp CHHHHHHHHHHHHTSGGGGGEEEEEECC------CCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTTCSE--EEE
T ss_pred cHHHHHHHHHHHHhcccCCCeEEEEEcC------CChhHHHHHHHHHhhcC-CEEEEcCCCCHHHHHHHHHHCCE--EEe
Confidence 4555555555555422 2333333221 110000111 12222 4566778898854 6777887 662
Q ss_pred ----ccChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhc-cc-chHHHHH
Q 011765 363 ----HAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLV-EE-KGQIYRD 436 (478)
Q Consensus 363 ----HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~-~~-~~~~~~~ 436 (478)
-|--+++.||+++|+|+|+... ......+. .|.|..++.. +.++++++|.++++ ++ .-..+.+
T Consensus 337 ps~~e~~~~~~~EAma~G~Pvi~s~~----~~~~e~~~-~~~g~~~~~~------d~~~la~~i~~ll~~~~~~~~~~~~ 405 (439)
T 3fro_A 337 PSYFEPFGLVALEAMCLGAIPIASAV----GGLRDIIT-NETGILVKAG------DPGELANAILKALELSRSDLSKFRE 405 (439)
T ss_dssp CBSCCSSCHHHHHHHHTTCEEEEESS----THHHHHCC-TTTCEEECTT------CHHHHHHHHHHHHHHTTTTTHHHHH
T ss_pred CCCCCCccHHHHHHHHCCCCeEEcCC----CCcceeEE-cCceEEeCCC------CHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 2334799999999999999643 34444443 4688888764 88999999999998 31 1133444
Q ss_pred HHHHHHHHhcccCChHHHHHHHHHHHHhcccc
Q 011765 437 KAKEMKGLFGDKGRHDRYVDNFLNYLKNHRCL 468 (478)
Q Consensus 437 ~a~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (478)
++++.. +.-..+..++.+++.+++...+
T Consensus 406 ~~~~~~----~~~s~~~~~~~~~~~~~~~~~~ 433 (439)
T 3fro_A 406 NCKKRA----MSFSWEKSAERYVKAYTGSIDR 433 (439)
T ss_dssp HHHHHH----HTSCHHHHHHHHHHHHHTCSCC
T ss_pred HHHHHH----hhCcHHHHHHHHHHHHHHHHHh
Confidence 444433 3344567778888888776554
No 31
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.48 E-value=2e-13 Score=134.42 Aligned_cols=345 Identities=12% Similarity=0.092 Sum_probs=180.5
Q ss_pred CCCCccEEEEecCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCCcccc----CCCCCCCCCCCeE-EEEecCCCCCCCCC
Q 011765 2 ADNSKLQIAMFPWLAFGHMIPWLELAKLIAQK-GHKIFFISTPRNIDR----LPRLPQNLASMIQ-FVKISLPHVDNLRE 75 (478)
Q Consensus 2 ~~~~~~~il~~~~~~~gH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~----~~~~g~~~~~~i~-~~~i~~~~~~~l~~ 75 (478)
.++++|||+++. +......=+..|.++|.++ |+++.++.+....+. .+..+ ++ -+.+ ..
T Consensus 21 ~~~~m~ki~~v~-Gtr~~~~~~a~li~~l~~~~~~~~~~~~tG~h~~~~~~~~~~~~------i~~~~~l--------~~ 85 (396)
T 3dzc_A 21 QSNAMKKVLIVF-GTRPEAIKMAPLVQQLCQDNRFVAKVCVTGQHREMLDQVLELFS------ITPDFDL--------NI 85 (396)
T ss_dssp ---CCEEEEEEE-CSHHHHHHHHHHHHHHHHCTTEEEEEEECCSSSHHHHHHHHHTT------CCCSEEC--------CC
T ss_pred HhCCCCeEEEEE-eccHhHHHHHHHHHHHHhCCCCcEEEEEecccHHHHHHHHHhcC------CCCceee--------ec
Confidence 345577887765 4555566668899999987 799987776655421 11111 11 0011 00
Q ss_pred CccccCCCChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEc--CCc-ccHHHHHHHhCCCeEEEecchHHHHHhhcccc
Q 011765 76 NAEATIDLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFD--FAA-YWLPARARELGIPSGFFSIFTAATLGYFGPSS 152 (478)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D--~~~-~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~ 152 (478)
... ...... ........+.+++++.+||+|++- ... ..+..+|..+|||++.+.... ..+
T Consensus 86 --~~~---~~~~~~----~~~~~~~~l~~~l~~~kPDvVi~~g~~~~~~~~~~aa~~~~IPv~h~~ag~-rs~------- 148 (396)
T 3dzc_A 86 --MEP---GQTLNG----VTSKILLGMQQVLSSEQPDVVLVHGDTATTFAASLAAYYQQIPVGHVEAGL-RTG------- 148 (396)
T ss_dssp --CCT---TCCHHH----HHHHHHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHTTTCCEEEETCCC-CCS-------
T ss_pred --CCC---CCCHHH----HHHHHHHHHHHHHHhcCCCEEEEECCchhHHHHHHHHHHhCCCEEEEECCc-ccc-------
Confidence 000 001111 123334477888889999999863 233 345688999999987542100 000
Q ss_pred ccccccCCCCCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHH
Q 011765 153 VLINDSGDHLKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLK 232 (478)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~ 232 (478)
..+.+++. .+ .+.+ ..+.++.++..+ ....+
T Consensus 149 -------------------~~~~~~~~----------~~-------------~r~~--~~~~a~~~~~~s-----e~~~~ 179 (396)
T 3dzc_A 149 -------------------NIYSPWPE----------EG-------------NRKL--TAALTQYHFAPT-----DTSRA 179 (396)
T ss_dssp -------------------CTTSSTTH----------HH-------------HHHH--HHHTCSEEEESS-----HHHHH
T ss_pred -------------------ccccCCcH----------HH-------------HHHH--HHHhcCEEECCC-----HHHHH
Confidence 00000000 00 0000 012346666655 22222
Q ss_pred HHHh-hcC-CCeeeec-cCCCCCCCCCCCCCCCC-------hhhHhhhccc-CCCCceEEEEeCcccCCCHHHHHHHHHH
Q 011765 233 LLEQ-LHR-KPVIPVG-QLPTTTGDGDSDAETDT-------WRSIKEWLDE-QEKGSVVYVAFGSEAKPSQEELTEIALG 301 (478)
Q Consensus 233 ~~~~-~~~-~~~~~vG-p~~~~~~~~~~~~~~~~-------~~~~~~~l~~-~~~~~~v~vs~Gs~~~~~~~~~~~~~~a 301 (478)
.+.. ..+ .++..+| |........ ... .+++.+.+.. .+++++|+++.+-...... .+..++++
T Consensus 180 ~l~~~G~~~~ki~vvGn~~~d~~~~~-----~~~~~~~~~~~~~~r~~lg~l~~~~~~vlv~~hR~~~~~~-~~~~ll~A 253 (396)
T 3dzc_A 180 NLLQENYNAENIFVTGNTVIDALLAV-----REKIHTDMDLQATLESQFPMLDASKKLILVTGHRRESFGG-GFERICQA 253 (396)
T ss_dssp HHHHTTCCGGGEEECCCHHHHHHHHH-----HHHHHHCHHHHHHHHHTCTTCCTTSEEEEEECSCBCCCTT-HHHHHHHH
T ss_pred HHHHcCCCcCcEEEECCcHHHHHHHh-----hhhcccchhhHHHHHHHhCccCCCCCEEEEEECCcccchh-HHHHHHHH
Confidence 2222 122 3477788 433111000 000 0223333331 2345677776633232222 24566666
Q ss_pred HHhC-----CCCEEEEEecCCCCCCCCCCCCChhhhhhc-CCCcEEEeccCCh---hhhhcCCCceeeeeccChhhHHHH
Q 011765 302 LELS-----KLPFFWVLKKRLGQADTEPIELPDGFEERT-RGRGVVYTSWAPQ---LAILAHDSVGGFLTHAGWSSVVEA 372 (478)
Q Consensus 302 l~~~-----~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~-~~~n~~~~~~vpq---~~vL~~~~~~~~ItHgG~~s~~ea 372 (478)
++.+ +.++++..+.+ ..+-+.+.+.. ..+++.+.+++++ ..+++.+++ +|+-.| |.+.||
T Consensus 254 ~~~l~~~~~~~~~v~~~g~~--------~~~~~~l~~~~~~~~~v~~~~~lg~~~~~~l~~~ad~--vv~~SG-g~~~EA 322 (396)
T 3dzc_A 254 LITTAEQHPECQILYPVHLN--------PNVREPVNKLLKGVSNIVLIEPQQYLPFVYLMDRAHI--ILTDSG-GIQEEA 322 (396)
T ss_dssp HHHHHHHCTTEEEEEECCBC--------HHHHHHHHHHTTTCTTEEEECCCCHHHHHHHHHHCSE--EEESCS-GGGTTG
T ss_pred HHHHHHhCCCceEEEEeCCC--------hHHHHHHHHHHcCCCCEEEeCCCCHHHHHHHHHhcCE--EEECCc-cHHHHH
Confidence 6432 44555543321 00111111111 2358888777754 457778888 999987 656799
Q ss_pred HHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChH
Q 011765 373 LQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHD 452 (478)
Q Consensus 373 l~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 452 (478)
.++|+|+|+..-..+++ .+.+.|.++.+. .+.++|.+++.++++ |++.++++.+-...+.+++
T Consensus 323 ~a~G~PvV~~~~~~~~~----e~v~~G~~~lv~-------~d~~~l~~ai~~ll~---d~~~~~~m~~~~~~~~~~~--- 385 (396)
T 3dzc_A 323 PSLGKPVLVMRETTERP----EAVAAGTVKLVG-------TNQQQICDALSLLLT---DPQAYQAMSQAHNPYGDGK--- 385 (396)
T ss_dssp GGGTCCEEECCSSCSCH----HHHHHTSEEECT-------TCHHHHHHHHHHHHH---CHHHHHHHHTSCCTTCCSC---
T ss_pred HHcCCCEEEccCCCcch----HHHHcCceEEcC-------CCHHHHHHHHHHHHc---CHHHHHHHhhccCCCcCCh---
Confidence 99999999975555543 245678775543 268999999999999 7887777766555555555
Q ss_pred HHHHHHHHHH
Q 011765 453 RYVDNFLNYL 462 (478)
Q Consensus 453 ~~~~~i~~~~ 462 (478)
+++.|++.+
T Consensus 386 -aa~ri~~~l 394 (396)
T 3dzc_A 386 -ACQRIADIL 394 (396)
T ss_dssp -HHHHHHHHH
T ss_pred -HHHHHHHHH
Confidence 444455444
No 32
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=99.45 E-value=2.9e-11 Score=123.01 Aligned_cols=115 Identities=17% Similarity=0.131 Sum_probs=77.3
Q ss_pred CCcEEEeccCChhh---hhcCC----Cceeeee---ccC-hhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEee
Q 011765 337 GRGVVYTSWAPQLA---ILAHD----SVGGFLT---HAG-WSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIP 405 (478)
Q Consensus 337 ~~n~~~~~~vpq~~---vL~~~----~~~~~It---HgG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~ 405 (478)
.+++.+..++|+.+ ++..+ ++ +|. +-| -+++.||+++|+|+|+... ......+.+...|..++
T Consensus 334 ~~~V~~~G~v~~~~~~~~~~~a~~~~dv--~v~pS~~Eg~~~~~lEAma~G~PvI~s~~----~g~~e~v~~~~~g~l~~ 407 (499)
T 2r60_A 334 RGKVSMFPLNSQQELAGCYAYLASKGSV--FALTSFYEPFGLAPVEAMASGLPAVVTRN----GGPAEILDGGKYGVLVD 407 (499)
T ss_dssp BTTEEEEECCSHHHHHHHHHHHHHTTCE--EEECCSCBCCCSHHHHHHHTTCCEEEESS----BHHHHHTGGGTSSEEEC
T ss_pred CceEEECCCCCHHHHHHHHHhcCcCCCE--EEECcccCCCCcHHHHHHHcCCCEEEecC----CCHHHHhcCCceEEEeC
Confidence 35799999998744 66677 77 663 223 3689999999999999653 44555566656788887
Q ss_pred ccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHh-cccCChHHHHHHHHHHHHhcc
Q 011765 406 RDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLF-GDKGRHDRYVDNFLNYLKNHR 466 (478)
Q Consensus 406 ~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~i~~~~~~~~ 466 (478)
.. +.++++++|.++++ |++.++++.+-+... .+.-+.+..++.+++.+++..
T Consensus 408 ~~------d~~~la~~i~~ll~---~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~~~ 460 (499)
T 2r60_A 408 PE------DPEDIARGLLKAFE---SEETWSAYQEKGKQRVEERYTWQETARGYLEVIQEIA 460 (499)
T ss_dssp TT------CHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHHSBHHHHHHHHHHHHHHHH
T ss_pred CC------CHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 63 78999999999999 666555544333332 222344555566666555443
No 33
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.42 E-value=3e-12 Score=125.60 Aligned_cols=161 Identities=14% Similarity=0.167 Sum_probs=96.6
Q ss_pred CCceEEEEeCcccCCCHHHHHHHHHHHHh----C-CCCEEEEEecCCCCCCCCCCCCChhhhhhcC-CCcEEEeccCCh-
Q 011765 276 KGSVVYVAFGSEAKPSQEELTEIALGLEL----S-KLPFFWVLKKRLGQADTEPIELPDGFEERTR-GRGVVYTSWAPQ- 348 (478)
Q Consensus 276 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~----~-~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~-~~n~~~~~~vpq- 348 (478)
++++++++.|+..... ..+..++++++. . +.++++..+.+ ...-+.+.+... .+++.+.+++++
T Consensus 204 ~~~~vl~~~gr~~~~~-kg~~~li~a~~~l~~~~~~~~l~i~~g~~--------~~~~~~l~~~~~~~~~v~~~g~~~~~ 274 (384)
T 1vgv_A 204 DKKMILVTGHRRESFG-RGFEEICHALADIATTHQDIQIVYPVHLN--------PNVREPVNRILGHVKNVILIDPQEYL 274 (384)
T ss_dssp TSEEEEEECCCBSSCC-HHHHHHHHHHHHHHHHCTTEEEEEECCBC--------HHHHHHHHHHHTTCTTEEEECCCCHH
T ss_pred CCCEEEEEeCCccccc-hHHHHHHHHHHHHHhhCCCeEEEEEcCCC--------HHHHHHHHHHhhcCCCEEEeCCCCHH
Confidence 3557888888765322 234445555432 2 34444432211 001111222111 358888666665
Q ss_pred --hhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHh
Q 011765 349 --LAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVL 426 (478)
Q Consensus 349 --~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll 426 (478)
.++++.+++ ||+..|. .+.||+++|+|+|+.+...+.. .+.+.|.|..++. +.++|.++|.+++
T Consensus 275 ~~~~~~~~ad~--~v~~Sg~-~~lEA~a~G~PvI~~~~~~~~~----e~v~~g~g~lv~~-------d~~~la~~i~~ll 340 (384)
T 1vgv_A 275 PFVWLMNHAWL--ILTDSGG-IQEEAPSLGKPVLVMRDTTERP----EAVTAGTVRLVGT-------DKQRIVEEVTRLL 340 (384)
T ss_dssp HHHHHHHHCSE--EEESSST-GGGTGGGGTCCEEEESSCCSCH----HHHHHTSEEEECS-------SHHHHHHHHHHHH
T ss_pred HHHHHHHhCcE--EEECCcc-hHHHHHHcCCCEEEccCCCCcc----hhhhCCceEEeCC-------CHHHHHHHHHHHH
Confidence 557788888 9988754 4889999999999998744433 2456688888753 6789999999999
Q ss_pred cccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHH
Q 011765 427 VEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYL 462 (478)
Q Consensus 427 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~ 462 (478)
+ |++.++++.+-++.+.+....++.++.+++.+
T Consensus 341 ~---d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 373 (384)
T 1vgv_A 341 K---DENEYQAMSRAHNPYGDGQACSRILEALKNNR 373 (384)
T ss_dssp H---CHHHHHHHHSSCCTTCCSCHHHHHHHHHHHTC
T ss_pred h---ChHHHhhhhhccCCCcCCCHHHHHHHHHHHHH
Confidence 9 77766655544333434443344444444433
No 34
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.39 E-value=1.3e-12 Score=128.87 Aligned_cols=110 Identities=16% Similarity=0.162 Sum_probs=81.2
Q ss_pred CCcEEEeccCCh---hhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcc
Q 011765 337 GRGVVYTSWAPQ---LAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFF 413 (478)
Q Consensus 337 ~~n~~~~~~vpq---~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~ 413 (478)
.+++.+.+++++ ..+++.+++ +|+-.|..+ .||.++|+|+|++|-..+++. +.+.|.|+.+. .
T Consensus 281 ~~~v~l~~~l~~~~~~~l~~~ad~--vv~~SGg~~-~EA~a~g~PvV~~~~~~~~~e----~v~~g~~~lv~-------~ 346 (403)
T 3ot5_A 281 HERIHLIEPLDAIDFHNFLRKSYL--VFTDSGGVQ-EEAPGMGVPVLVLRDTTERPE----GIEAGTLKLIG-------T 346 (403)
T ss_dssp CTTEEEECCCCHHHHHHHHHHEEE--EEECCHHHH-HHGGGTTCCEEECCSSCSCHH----HHHHTSEEECC-------S
T ss_pred CCCEEEeCCCCHHHHHHHHHhcCE--EEECCccHH-HHHHHhCCCEEEecCCCcchh----heeCCcEEEcC-------C
Confidence 358988898874 456777777 998875322 699999999999976555554 34678777664 2
Q ss_pred cHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHH
Q 011765 414 TRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLK 463 (478)
Q Consensus 414 ~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~ 463 (478)
+.++|.+++.++++ |++.++++.+-...+.+++.+++.++.+.+.+.
T Consensus 347 d~~~l~~ai~~ll~---~~~~~~~m~~~~~~~g~~~aa~rI~~~l~~~l~ 393 (403)
T 3ot5_A 347 NKENLIKEALDLLD---NKESHDKMAQAANPYGDGFAANRILAAIKSHFE 393 (403)
T ss_dssp CHHHHHHHHHHHHH---CHHHHHHHHHSCCTTCCSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHc---CHHHHHHHHhhcCcccCCcHHHHHHHHHHHHhC
Confidence 78999999999999 788877776655556667766677776666654
No 35
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=99.37 E-value=3.6e-10 Score=110.14 Aligned_cols=161 Identities=16% Similarity=0.196 Sum_probs=98.9
Q ss_pred CceEEEEeCcccCCCHHHHHHHHHHHHhCCC----CE-EEEEecCCCCCCCCCCCCChhhhhh---cC-CCcEEEeccCC
Q 011765 277 GSVVYVAFGSEAKPSQEELTEIALGLELSKL----PF-FWVLKKRLGQADTEPIELPDGFEER---TR-GRGVVYTSWAP 347 (478)
Q Consensus 277 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~----~~-i~~~~~~~~~~~~~~~~~p~~~~~~---~~-~~n~~~~~~vp 347 (478)
++.+++..|+... ...+..++++++.... .+ ++.++.+ . .+.+.+. .. .+++.+..+..
T Consensus 195 ~~~~i~~~G~~~~--~K~~~~li~a~~~l~~~~~~~~~l~i~G~g------~----~~~~~~~~~~~~~~~~v~~~g~~~ 262 (374)
T 2iw1_A 195 QQNLLLQVGSDFG--RKGVDRSIEALASLPESLRHNTLLFVVGQD------K----PRKFEALAEKLGVRSNVHFFSGRN 262 (374)
T ss_dssp TCEEEEEECSCTT--TTTHHHHHHHHHTSCHHHHHTEEEEEESSS------C----CHHHHHHHHHHTCGGGEEEESCCS
T ss_pred CCeEEEEeccchh--hcCHHHHHHHHHHhHhccCCceEEEEEcCC------C----HHHHHHHHHHcCCCCcEEECCCcc
Confidence 3467777887653 3445556666655432 23 3333321 1 1222221 11 35788888765
Q ss_pred h-hhhhcCCCceeeee----ccChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHH
Q 011765 348 Q-LAILAHDSVGGFLT----HAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESL 422 (478)
Q Consensus 348 q-~~vL~~~~~~~~It----HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i 422 (478)
+ .+++..+++ +|. -|..+++.||+++|+|+|+.+. ..+...+++.+.|..++.. -+.+++.++|
T Consensus 263 ~~~~~~~~ad~--~v~ps~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~~~~g~~~~~~-----~~~~~l~~~i 331 (374)
T 2iw1_A 263 DVSELMAAADL--LLHPAYQEAAGIVLLEAITAGLPVLTTAV----CGYAHYIADANCGTVIAEP-----FSQEQLNEVL 331 (374)
T ss_dssp CHHHHHHHCSE--EEECCSCCSSCHHHHHHHHHTCCEEEETT----STTTHHHHHHTCEEEECSS-----CCHHHHHHHH
T ss_pred cHHHHHHhcCE--EEeccccCCcccHHHHHHHCCCCEEEecC----CCchhhhccCCceEEeCCC-----CCHHHHHHHH
Confidence 5 557888888 664 4566899999999999999654 4556677778899998743 3899999999
Q ss_pred HHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHH
Q 011765 423 RLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLK 463 (478)
Q Consensus 423 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~ 463 (478)
.++++ |++.++++.+-+......-......+.+.+.++
T Consensus 332 ~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 369 (374)
T 2iw1_A 332 RKALT---QSPLRMAWAENARHYADTQDLYSLPEKAADIIT 369 (374)
T ss_dssp HHHHH---CHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHH
T ss_pred HHHHc---ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99998 666555444443333222222234444444444
No 36
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.32 E-value=3.7e-11 Score=117.40 Aligned_cols=163 Identities=14% Similarity=0.128 Sum_probs=94.8
Q ss_pred CCceEEEEeCcccCCCHHHHHHHHHHHHhC---CCCEEEEEecCCCCCCCCCCCCChhhhhhcC-CCcEEEeccCCh---
Q 011765 276 KGSVVYVAFGSEAKPSQEELTEIALGLELS---KLPFFWVLKKRLGQADTEPIELPDGFEERTR-GRGVVYTSWAPQ--- 348 (478)
Q Consensus 276 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~---~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~-~~n~~~~~~vpq--- 348 (478)
++++++++.|...... ..+..++++++.. ...+.+++..+ ....+-+.+.+... .+++.+.+++++
T Consensus 204 ~~~~vl~~~gr~~~~~-K~~~~li~a~~~l~~~~~~~~~i~~~g------~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 276 (375)
T 3beo_A 204 NNRLVLMTAHRRENLG-EPMRNMFRAIKRLVDKHEDVQVVYPVH------MNPVVRETANDILGDYGRIHLIEPLDVIDF 276 (375)
T ss_dssp TSEEEEEECCCGGGTT-HHHHHHHHHHHHHHHHCTTEEEEEECC------SCHHHHHHHHHHHTTCTTEEEECCCCHHHH
T ss_pred CCCeEEEEecccccch-hHHHHHHHHHHHHHhhCCCeEEEEeCC------CCHHHHHHHHHHhhccCCEEEeCCCCHHHH
Confidence 3457777888755321 3345556665432 11233333321 00001111111112 258888777765
Q ss_pred hhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcc
Q 011765 349 LAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVE 428 (478)
Q Consensus 349 ~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~ 428 (478)
.++++.+++ ||+..| +.+.||+++|+|+|+.+..... ..+.+.|.|..++. +.++|+++|.++++
T Consensus 277 ~~~~~~ad~--~v~~sg-~~~lEA~a~G~Pvi~~~~~~~~----~e~v~~g~g~~v~~-------d~~~la~~i~~ll~- 341 (375)
T 3beo_A 277 HNVAARSYL--MLTDSG-GVQEEAPSLGVPVLVLRDTTER----PEGIEAGTLKLAGT-------DEETIFSLADELLS- 341 (375)
T ss_dssp HHHHHTCSE--EEECCH-HHHHHHHHHTCCEEECSSCCSC----HHHHHTTSEEECCS-------CHHHHHHHHHHHHH-
T ss_pred HHHHHhCcE--EEECCC-ChHHHHHhcCCCEEEecCCCCC----ceeecCCceEEcCC-------CHHHHHHHHHHHHh-
Confidence 457777888 888763 4588999999999998543332 22456678887752 67999999999999
Q ss_pred cchHHHHHHHHHHHHHhcccCChHHHHHHHHHHH
Q 011765 429 EKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYL 462 (478)
Q Consensus 429 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~ 462 (478)
|++.++++.+-+..+.+....++.++.+++.+
T Consensus 342 --~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 373 (375)
T 3beo_A 342 --DKEAHDKMSKASNPYGDGRASERIVEAILKHF 373 (375)
T ss_dssp --CHHHHHHHCCCCCTTCCSCHHHHHHHHHHHHT
T ss_pred --ChHhHhhhhhcCCCCCCCcHHHHHHHHHHHHh
Confidence 77766655443333334443445555555443
No 37
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=99.25 E-value=1.5e-10 Score=111.55 Aligned_cols=150 Identities=13% Similarity=0.080 Sum_probs=92.1
Q ss_pred EEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChh---hhhhcCCCcEEEeccCChh---hhhc
Q 011765 280 VYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDG---FEERTRGRGVVYTSWAPQL---AILA 353 (478)
Q Consensus 280 v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~---~~~~~~~~n~~~~~~vpq~---~vL~ 353 (478)
+++..|+.. ....+..++++++..+.+++++-.+. ..+. +.++.. +++.+..|+++. +++.
T Consensus 164 ~i~~vG~~~--~~Kg~~~li~a~~~~~~~l~i~G~g~----------~~~~l~~~~~~~~-~~v~~~g~~~~~~l~~~~~ 230 (342)
T 2iuy_A 164 FLLFMGRVS--PHKGALEAAAFAHACGRRLVLAGPAW----------EPEYFDEITRRYG-STVEPIGEVGGERRLDLLA 230 (342)
T ss_dssp CEEEESCCC--GGGTHHHHHHHHHHHTCCEEEESCCC----------CHHHHHHHHHHHT-TTEEECCCCCHHHHHHHHH
T ss_pred EEEEEeccc--cccCHHHHHHHHHhcCcEEEEEeCcc----------cHHHHHHHHHHhC-CCEEEeccCCHHHHHHHHH
Confidence 455567765 34556667777766677766553221 1111 222223 689999999985 5777
Q ss_pred CCCceeee--ec-----------cCh-hhHHHHHHhCCcEeccccccchhhHHHHHhh--cCeEEEeeccCCCCcccHHH
Q 011765 354 HDSVGGFL--TH-----------AGW-SSVVEALQFGMPLIVLTCYADQGLNAKLLEE--KQIVELIPRDEGDGFFTRNS 417 (478)
Q Consensus 354 ~~~~~~~I--tH-----------gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~--~g~G~~l~~~~~~~~~~~~~ 417 (478)
.+++ +| +. -|. +++.||+++|+|+|+... ......+++ .+.|...+. +.++
T Consensus 231 ~adv--~v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~~----~~~~e~~~~~~~~~g~~~~~-------d~~~ 297 (342)
T 2iuy_A 231 SAHA--VLAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGN----GCLAEIVPSVGEVVGYGTDF-------APDE 297 (342)
T ss_dssp HCSE--EEECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECCT----TTHHHHGGGGEEECCSSSCC-------CHHH
T ss_pred hCCE--EEECCcccccccccccccCccHHHHHHHhcCCCEEEcCC----CChHHHhcccCCCceEEcCC-------CHHH
Confidence 8888 55 32 343 689999999999999765 446666666 445555432 5788
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHH-HHhcccCChHHHHHHHHHHHHhcc
Q 011765 418 VAESLRLVLVEEKGQIYRDKAKEMK-GLFGDKGRHDRYVDNFLNYLKNHR 466 (478)
Q Consensus 418 l~~~i~~ll~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~i~~~~~~~~ 466 (478)
++++|.++++ .+++++.. +.+ ..++.++.+++.+++..
T Consensus 298 l~~~i~~l~~-------~~~~~~~~~~~~----s~~~~~~~~~~~~~~~~ 336 (342)
T 2iuy_A 298 ARRTLAGLPA-------SDEVRRAAVRLW----GHVTIAERYVEQYRRLL 336 (342)
T ss_dssp HHHHHHTSCC-------HHHHHHHHHHHH----BHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-------HHHHHHHHHHhc----CHHHHHHHHHHHHHHHH
Confidence 9999998887 22333322 333 23345566666655443
No 38
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.17 E-value=3.2e-10 Score=110.77 Aligned_cols=347 Identities=13% Similarity=0.119 Sum_probs=184.1
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccc-cCCCCCCCCCCCeEEEEecCCCCC-CCCCCccccCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNID-RLPRLPQNLASMIQFVKISLPHVD-NLRENAEATIDL 83 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~-~~~~~g~~~~~~i~~~~i~~~~~~-~l~~~~~~~~~~ 83 (478)
++|++++ .++.--+.-+..|.++|.++ .++.++.+....+ .+.+ +.|..+..+..+ .+..+ ...
T Consensus 9 ~~~~~~v-~GtRpe~~k~~p~~~~l~~~-~~~~~~~tgqh~~~~~~~--------~~~~~~~i~~~~~~l~~~---~~~- 74 (385)
T 4hwg_A 9 MLKVMTI-VGTRPELIKLCCVISEFDKH-TKHILVHTGQNYAYELNQ--------VFFDDMGIRKPDYFLEVA---ADN- 74 (385)
T ss_dssp CCEEEEE-ECSHHHHHHHHHHHHHHHHH-SEEEEEECSCHHHHHHTH--------HHHC-CCCCCCSEECCCC---CCC-
T ss_pred hhheeEE-EEcCHhHHHHHHHHHHHHhc-CCEEEEEeCCCCChhHHH--------HHHhhCCCCCCceecCCC---CCC-
Confidence 4566554 45666666777778888777 9988888887654 2222 111111111001 11111 011
Q ss_pred ChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEE--cCCcccHHHHHHHhCCCeEEEecchHHHHHhhccccccccccCCC
Q 011765 84 PYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLF--DFAAYWLPARARELGIPSGFFSIFTAATLGYFGPSSVLINDSGDH 161 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~--D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (478)
. ..........+.+++++.+||+|+. |....++..+|.++|||++.+.... ..
T Consensus 75 ---~----~~~~~~~~~~l~~~l~~~kPD~Vlv~gd~~~~~aalaA~~~~IPv~h~eagl-rs----------------- 129 (385)
T 4hwg_A 75 ---T----AKSIGLVIEKVDEVLEKEKPDAVLFYGDTNSCLSAIAAKRRKIPIFHMEAGN-RC----------------- 129 (385)
T ss_dssp ---S----HHHHHHHHHHHHHHHHHHCCSEEEEESCSGGGGGHHHHHHTTCCEEEESCCC-CC-----------------
T ss_pred ---H----HHHHHHHHHHHHHHHHhcCCcEEEEECCchHHHHHHHHHHhCCCEEEEeCCC-cc-----------------
Confidence 1 2222334457778888999999986 3344455889999999976552200 00
Q ss_pred CCCCCcccCCCcccccccccccchhhhhhhhhhhcCCcccchhhhhhhccccCCcEEEEcCcCccChHHHHHHH-hhcC-
Q 011765 162 LKTPEDYTRVPNWVSFPTTISYRLFEARKVFDILISDESNVSHGYRFGQSLKGCDIVAVRSCMEFEPEWLKLLE-QLHR- 239 (478)
Q Consensus 162 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~-~~~~- 239 (478)
. ....|. . . .+.+. -+.++.++..+ ....+.+. ...+
T Consensus 130 ------~---~~~~pe---------e---~-------------nR~~~--~~~a~~~~~~t-----e~~~~~l~~~G~~~ 168 (385)
T 4hwg_A 130 ------F---DQRVPE---------E---I-------------NRKII--DHISDVNITLT-----EHARRYLIAEGLPA 168 (385)
T ss_dssp ------S---CTTSTH---------H---H-------------HHHHH--HHHCSEEEESS-----HHHHHHHHHTTCCG
T ss_pred ------c---cccCcH---------H---H-------------HHHHH--HhhhceeecCC-----HHHHHHHHHcCCCc
Confidence 0 000010 0 0 00000 11234455544 22222221 1222
Q ss_pred CCeeeec-cCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCC-HHHHHHHHHHHHhC----CCCEEEEE
Q 011765 240 KPVIPVG-QLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPS-QEELTEIALGLELS----KLPFFWVL 313 (478)
Q Consensus 240 ~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~-~~~~~~~~~al~~~----~~~~i~~~ 313 (478)
.++..+| |......... .....+++.+.++-.+ ++.|+++.|...+.+ .+.+..+++++..+ +..+++..
T Consensus 169 ~~I~vtGnp~~D~~~~~~---~~~~~~~~~~~lgl~~-~~~iLvt~hr~e~~~~~~~l~~ll~al~~l~~~~~~~vv~p~ 244 (385)
T 4hwg_A 169 ELTFKSGSHMPEVLDRFM---PKILKSDILDKLSLTP-KQYFLISSHREENVDVKNNLKELLNSLQMLIKEYNFLIIFST 244 (385)
T ss_dssp GGEEECCCSHHHHHHHHH---HHHHHCCHHHHTTCCT-TSEEEEEECCC-----CHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_pred CcEEEECCchHHHHHHhh---hhcchhHHHHHcCCCc-CCEEEEEeCCchhcCcHHHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 2477777 3321100000 0001122333343322 568888888765433 25566777776543 56666654
Q ss_pred ecCCCCCCCCCCCCChhhhhh---c-CCCcEEEeccCCh---hhhhcCCCceeeeeccChhhHHHHHHhCCcEecccccc
Q 011765 314 KKRLGQADTEPIELPDGFEER---T-RGRGVVYTSWAPQ---LAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYA 386 (478)
Q Consensus 314 ~~~~~~~~~~~~~~p~~~~~~---~-~~~n~~~~~~vpq---~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~ 386 (478)
... +-..+.+. . ..+++.+.+.+++ ..+++.+++ +||-.|. .+.||.+.|+|+|+++...
T Consensus 245 ~p~----------~~~~l~~~~~~~~~~~~v~l~~~lg~~~~~~l~~~adl--vvt~SGg-v~~EA~alG~Pvv~~~~~t 311 (385)
T 4hwg_A 245 HPR----------TKKRLEDLEGFKELGDKIRFLPAFSFTDYVKLQMNAFC--ILSDSGT-ITEEASILNLPALNIREAH 311 (385)
T ss_dssp CHH----------HHHHHHTSGGGGGTGGGEEECCCCCHHHHHHHHHHCSE--EEECCTT-HHHHHHHTTCCEEECSSSC
T ss_pred ChH----------HHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhCcE--EEECCcc-HHHHHHHcCCCEEEcCCCc
Confidence 321 00111111 1 1247887666654 467888888 9998775 4699999999999998755
Q ss_pred chhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHh-cccCChHHHHHHHHHHHH
Q 011765 387 DQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLF-GDKGRHDRYVDNFLNYLK 463 (478)
Q Consensus 387 DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~i~~~~~ 463 (478)
+-+. ..+.|.++.+. .+.+.|.+++.++++ |+..++++..-...+ .+++.+++.++.+.+++.
T Consensus 312 er~e----~v~~G~~~lv~-------~d~~~i~~ai~~ll~---d~~~~~~m~~~~~~~~g~g~aa~rI~~~l~~~~~ 375 (385)
T 4hwg_A 312 ERPE----GMDAGTLIMSG-------FKAERVLQAVKTITE---EHDNNKRTQGLVPDYNEAGLVSKKILRIVLSYVD 375 (385)
T ss_dssp SCTH----HHHHTCCEECC-------SSHHHHHHHHHHHHT---TCBTTBCCSCCCHHHHTCCCHHHHHHHHHHHHHH
T ss_pred cchh----hhhcCceEEcC-------CCHHHHHHHHHHHHh---ChHHHHHhhccCCCCCCCChHHHHHHHHHHHHhh
Confidence 4222 25668776553 378999999999999 544443333333346 777877777777776654
No 39
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=99.16 E-value=3.9e-09 Score=104.53 Aligned_cols=112 Identities=15% Similarity=0.043 Sum_probs=77.0
Q ss_pred CCcEEEeccCC---h---hhhhcCCCceeeeecc----ChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeec
Q 011765 337 GRGVVYTSWAP---Q---LAILAHDSVGGFLTHA----GWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPR 406 (478)
Q Consensus 337 ~~n~~~~~~vp---q---~~vL~~~~~~~~ItHg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~ 406 (478)
.+++.+..|++ + .+++..+++ +|.-. .-+++.||+++|+|+|+.+. ..+...+.+.+.|...+
T Consensus 292 ~~~V~~~G~~~~~~~~~~~~~~~~ad~--~v~ps~~E~~~~~~lEAma~G~PvI~~~~----~g~~e~i~~~~~g~l~~- 364 (416)
T 2x6q_A 292 DYDVKVLTNLIGVHAREVNAFQRASDV--ILQMSIREGFGLTVTEAMWKGKPVIGRAV----GGIKFQIVDGETGFLVR- 364 (416)
T ss_dssp CTTEEEEEGGGTCCHHHHHHHHHHCSE--EEECCSSCSSCHHHHHHHHTTCCEEEESC----HHHHHHCCBTTTEEEES-
T ss_pred CCcEEEecccCCCCHHHHHHHHHhCCE--EEECCCcCCCccHHHHHHHcCCCEEEccC----CCChhheecCCCeEEEC-
Confidence 45888888775 2 446777887 66433 34789999999999999664 45666666667788774
Q ss_pred cCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHH-hcccCChHHHHHHHHHHHHhc
Q 011765 407 DEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGL-FGDKGRHDRYVDNFLNYLKNH 465 (478)
Q Consensus 407 ~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~i~~~~~~~ 465 (478)
+.++++++|.++++ |++.++++.+-+.. ..+.-+.+..++.+++.+++.
T Consensus 365 -------d~~~la~~i~~ll~---~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~l 414 (416)
T 2x6q_A 365 -------DANEAVEVVLYLLK---HPEVSKEMGAKAKERVRKNFIITKHMERYLDILNSL 414 (416)
T ss_dssp -------SHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHTC
T ss_pred -------CHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHh
Confidence 46789999999999 66665554443333 323344566777777777643
No 40
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=99.15 E-value=5.5e-09 Score=105.70 Aligned_cols=168 Identities=7% Similarity=-0.009 Sum_probs=98.7
Q ss_pred eEEEEeCcccC-CCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhc--CCCcEE-EeccCCh--hhhh
Q 011765 279 VVYVAFGSEAK-PSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERT--RGRGVV-YTSWAPQ--LAIL 352 (478)
Q Consensus 279 ~v~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~--~~~n~~-~~~~vpq--~~vL 352 (478)
.+++..|+... ...+.+.+.+..+.+.+.+++++-.+. ...-+.+.+.. ..+++. +..+... ..++
T Consensus 292 ~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~ivG~g~--------~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~ 363 (485)
T 1rzu_A 292 PLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGD--------VALEGALLAAASRHHGRVGVAIGYNEPLSHLMQ 363 (485)
T ss_dssp CEEEEESCBSTTTTHHHHHTTHHHHHHTTCEEEEEECBC--------HHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHH
T ss_pred eEEEEEccCccccCHHHHHHHHHHHHhcCceEEEEeCCc--------hHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHH
Confidence 57778888774 223444444444444456655553321 00111111111 125776 5677333 2567
Q ss_pred cCCCceeeee----ccChhhHHHHHHhCCcEeccccccchhhHHHHHhhc---------CeEEEeeccCCCCcccHHHHH
Q 011765 353 AHDSVGGFLT----HAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEK---------QIVELIPRDEGDGFFTRNSVA 419 (478)
Q Consensus 353 ~~~~~~~~It----HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~---------g~G~~l~~~~~~~~~~~~~l~ 419 (478)
..+++ +|. -|.-.++.||+++|+|+|+... ......+.+. +.|..++.. +.++++
T Consensus 364 ~~adv--~v~pS~~E~~~~~~lEAma~G~PvI~s~~----gg~~e~v~~~~~~~~~~~~~~G~l~~~~------d~~~la 431 (485)
T 1rzu_A 364 AGCDA--IIIPSRFEPCGLTQLYALRYGCIPVVART----GGLADTVIDANHAALASKAATGVQFSPV------TLDGLK 431 (485)
T ss_dssp HHCSE--EEECCSCCSSCSHHHHHHHHTCEEEEESS----HHHHHHCCBCCHHHHHTTCCCBEEESSC------SHHHHH
T ss_pred hcCCE--EEECcccCCCCHHHHHHHHCCCCEEEeCC----CChhheecccccccccccCCcceEeCCC------CHHHHH
Confidence 78888 662 2334689999999999999654 3455555544 678887653 789999
Q ss_pred HHHHHHh---cccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHhccccCCC
Q 011765 420 ESLRLVL---VEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLKNHRCLRKG 471 (478)
Q Consensus 420 ~~i~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 471 (478)
++|.+++ + |++.++++.+-+. .+.-+-+..++.+++.+++.....+.
T Consensus 432 ~~i~~ll~~~~---~~~~~~~~~~~~~--~~~fs~~~~~~~~~~~y~~~~~~~~~ 481 (485)
T 1rzu_A 432 QAIRRTVRYYH---DPKLWTQMQKLGM--KSDVSWEKSAGLYAALYSQLISKGHH 481 (485)
T ss_dssp HHHHHHHHHHT---CHHHHHHHHHHHH--TCCCBHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHhC---CHHHHHHHHHHHH--HHhCChHHHHHHHHHHHHHhhCCCCC
Confidence 9999999 6 6666555544332 23444567778888888766654443
No 41
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=99.10 E-value=3e-08 Score=100.22 Aligned_cols=168 Identities=10% Similarity=0.007 Sum_probs=98.0
Q ss_pred ceEEEEeCcccC-CCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhc--CCCcEE-EeccCCh--hhh
Q 011765 278 SVVYVAFGSEAK-PSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERT--RGRGVV-YTSWAPQ--LAI 351 (478)
Q Consensus 278 ~~v~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~--~~~n~~-~~~~vpq--~~v 351 (478)
..+++..|+... .+.+.+.+.+..+.+.+.+++++-.+. ...-+.+.+.. ..+++. +..+... .++
T Consensus 292 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~ivG~g~--------~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~ 363 (485)
T 2qzs_A 292 VPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGD--------PVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRI 363 (485)
T ss_dssp SCEEEEEEEESGGGCHHHHHHHHHHHHHTTCEEEEEEEEC--------HHHHHHHHHHHHHSTTTEEEEESCCHHHHHHH
T ss_pred CeEEEEeccCccccCHHHHHHHHHHHhhCCcEEEEEeCCc--------hHHHHHHHHHHHhCCCcEEEeCCCCHHHHHHH
Confidence 366677787653 223444444444433456655554321 00111111111 125675 6677333 257
Q ss_pred hcCCCceeeee----ccChhhHHHHHHhCCcEeccccccchhhHHHHHhhc---------CeEEEeeccCCCCcccHHHH
Q 011765 352 LAHDSVGGFLT----HAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEK---------QIVELIPRDEGDGFFTRNSV 418 (478)
Q Consensus 352 L~~~~~~~~It----HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~---------g~G~~l~~~~~~~~~~~~~l 418 (478)
++.+++ +|. -|.-+++.||+++|+|+|+... ......+.+. +.|..++.. +.+++
T Consensus 364 ~~~adv--~v~pS~~E~~g~~~lEAma~G~PvI~s~~----gg~~e~v~~~~~~~~~~~~~~G~l~~~~------d~~~l 431 (485)
T 2qzs_A 364 MGGADV--ILVPSRFEPCGLTQLYGLKYGTLPLVRRT----GGLADTVSDCSLENLADGVASGFVFEDS------NAWSL 431 (485)
T ss_dssp HHHCSE--EEECCSCCSSCSHHHHHHHHTCEEEEESS----HHHHHHCCBCCHHHHHTTCCCBEEECSS------SHHHH
T ss_pred HHhCCE--EEECCccCCCcHHHHHHHHCCCCEEECCC----CCccceeccCccccccccccceEEECCC------CHHHH
Confidence 788888 662 2334689999999999999654 3455555544 578888754 78999
Q ss_pred HHHHHHHh---cccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHhccccCC
Q 011765 419 AESLRLVL---VEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLKNHRCLRK 470 (478)
Q Consensus 419 ~~~i~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 470 (478)
+++|.+++ + |++.++++.+-+.. +.-+-+..++.+++.+++.....+
T Consensus 432 a~~i~~ll~~~~---~~~~~~~~~~~~~~--~~fs~~~~~~~~~~ly~~~~~~~~ 481 (485)
T 2qzs_A 432 LRAIRRAFVLWS---RPSLWRFVQRQAMA--MDFSWQVAAKSYRELYYRLKLEHH 481 (485)
T ss_dssp HHHHHHHHHHHT---SHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHh--hcCCHHHHHHHHHHHHHHhhhhhc
Confidence 99999999 6 66666555443322 344456777888888877665443
No 42
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=99.08 E-value=2.7e-08 Score=98.34 Aligned_cols=114 Identities=11% Similarity=0.097 Sum_probs=76.5
Q ss_pred EEEeccCChh---hhhcCCCceeeee----ccChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCe------------
Q 011765 340 VVYTSWAPQL---AILAHDSVGGFLT----HAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQI------------ 400 (478)
Q Consensus 340 ~~~~~~vpq~---~vL~~~~~~~~It----HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~------------ 400 (478)
+.+..|+++. +++..+++ +|. -|.-.++.||+++|+|+|+... ......+.+...
T Consensus 256 v~~~g~~~~~~~~~~~~~adv--~v~pS~~E~~~~~~lEAma~G~PvI~s~~----~g~~e~v~~~~~~~i~~~~~~~~~ 329 (413)
T 3oy2_A 256 MINRTVLTDERVDMMYNACDV--IVNCSSGEGFGLCSAEGAVLGKPLIISAV----GGADDYFSGDCVYKIKPSAWISVD 329 (413)
T ss_dssp EEECSCCCHHHHHHHHHHCSE--EEECCSCCSSCHHHHHHHTTTCCEEEECC----HHHHHHSCTTTSEEECCCEEEECT
T ss_pred eeccCcCCHHHHHHHHHhCCE--EEeCCCcCCCCcHHHHHHHcCCCEEEcCC----CChHHHHccCcccccccccccccc
Confidence 6777899864 46777887 662 2334689999999999999553 344444443322
Q ss_pred ---EE--EeeccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhc-ccCChHHHHHHHHHHHHhccccC
Q 011765 401 ---VE--LIPRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFG-DKGRHDRYVDNFLNYLKNHRCLR 469 (478)
Q Consensus 401 ---G~--~l~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~ 469 (478)
|. .++.. +.++++++| ++++ |++.++++.+-+.... +.-.-+..++.+++.+++...++
T Consensus 330 ~~~G~~gl~~~~------d~~~la~~i-~l~~---~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 394 (413)
T 3oy2_A 330 DRDGIGGIEGII------DVDDLVEAF-TFFK---DEKNRKEYGKRVQDFVKTKPTWDDISSDIIDFFNSLLRVE 394 (413)
T ss_dssp TTCSSCCEEEEC------CHHHHHHHH-HHTT---SHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTC--
T ss_pred cccCcceeeCCC------CHHHHHHHH-HHhc---CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhc
Confidence 55 55543 899999999 9999 7777666665555543 44456777788888887665433
No 43
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=98.99 E-value=1.1e-07 Score=100.76 Aligned_cols=113 Identities=16% Similarity=0.070 Sum_probs=73.0
Q ss_pred CCcEEEeccC----Chhhhhc----CCCceeeeec----cChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEe
Q 011765 337 GRGVVYTSWA----PQLAILA----HDSVGGFLTH----AGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELI 404 (478)
Q Consensus 337 ~~n~~~~~~v----pq~~vL~----~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l 404 (478)
.+++.+..+. ++.++.. .+++ ||.- |--.++.||+++|+|+|+. |-......+.+.+.|..+
T Consensus 639 ~~~V~flG~~~~~v~~~eL~~~~~~aaDv--fV~PS~~EgfglvllEAMA~G~PVIas----d~GG~~EiV~dg~~Gllv 712 (816)
T 3s28_A 639 NGQFRWISSQMDRVRNGELYRYICDTKGA--FVQPALYEAFGLTVVEAMTCGLPTFAT----CKGGPAEIIVHGKSGFHI 712 (816)
T ss_dssp BBBEEEECCCCCHHHHHHHHHHHHHTTCE--EEECCSCBSSCHHHHHHHHTTCCEEEE----SSBTHHHHCCBTTTBEEE
T ss_pred CCcEEEccCccccCCHHHHHHHHHhcCeE--EEECCCccCccHHHHHHHHcCCCEEEe----CCCChHHHHccCCcEEEe
Confidence 3578877744 4444443 4556 6632 2346999999999999995 555566666666788888
Q ss_pred eccCCCCcccHHHHHHHHHHHh----cccchHHHHHHHHHHHHHhc-ccCChHHHHHHHHHHHHh
Q 011765 405 PRDEGDGFFTRNSVAESLRLVL----VEEKGQIYRDKAKEMKGLFG-DKGRHDRYVDNFLNYLKN 464 (478)
Q Consensus 405 ~~~~~~~~~~~~~l~~~i~~ll----~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~i~~~~~~ 464 (478)
+.. +.++++++|.+++ . |++.++++.+-+.... +.-+-+..++.+++.++.
T Consensus 713 ~p~------D~e~LA~aI~~lL~~Ll~---d~~~~~~m~~~ar~~a~~~fSwe~~a~~ll~lY~~ 768 (816)
T 3s28_A 713 DPY------HGDQAADTLADFFTKCKE---DPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGV 768 (816)
T ss_dssp CTT------SHHHHHHHHHHHHHHHHH---CTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred CCC------CHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 764 7889999997776 6 5665555544444433 333445566666665543
No 44
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.74 E-value=3.6e-06 Score=86.69 Aligned_cols=117 Identities=14% Similarity=0.143 Sum_probs=79.3
Q ss_pred CcEEEeccCChh---hhhcCCCceeee--e-ccChhhHHHHHHhCCcEecccccc-chhhHHHHHhhcCeEEEeeccCCC
Q 011765 338 RGVVYTSWAPQL---AILAHDSVGGFL--T-HAGWSSVVEALQFGMPLIVLTCYA-DQGLNAKLLEEKQIVELIPRDEGD 410 (478)
Q Consensus 338 ~n~~~~~~vpq~---~vL~~~~~~~~I--t-HgG~~s~~eal~~GvP~l~~P~~~-DQ~~na~~v~~~g~G~~l~~~~~~ 410 (478)
+++++..++++. .++..+++ || + .|+.+++.||+++|+|+|+.|-.. --..-+..+...|+...+..
T Consensus 434 ~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~~g~~e~v~~---- 507 (568)
T 2vsy_A 434 QRLVFMPKLPHPQYLARYRHADL--FLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGLDEMNVA---- 507 (568)
T ss_dssp GGEEEECCCCHHHHHHHGGGCSE--EECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHHHTCGGGBCS----
T ss_pred hHEEeeCCCCHHHHHHHHhcCCE--EeeCCCCCCcHHHHHHHhCCCCEEeccCCCchHHHHHHHHHHCCChhhhcC----
Confidence 689999999854 46777887 76 2 256689999999999999976321 11122455666677655432
Q ss_pred CcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhc---ccCChHHHHHHHHHHHHhcc
Q 011765 411 GFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFG---DKGRHDRYVDNFLNYLKNHR 466 (478)
Q Consensus 411 ~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~i~~~~~~~~ 466 (478)
+.+++.+++.++++ |++.++++.+-..... +.-..+..++.+++.+++..
T Consensus 508 ---~~~~la~~i~~l~~---~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~y~~~~ 560 (568)
T 2vsy_A 508 ---DDAAFVAKAVALAS---DPAALTALHARVDVLRRASGVFHMDGFADDFGALLQALA 560 (568)
T ss_dssp ---SHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHhc---CHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 78999999999999 7777666654443332 44445666777777666543
No 45
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=98.73 E-value=9.2e-07 Score=87.15 Aligned_cols=72 Identities=11% Similarity=0.134 Sum_probs=55.6
Q ss_pred CcEEEeccCChhh---hhcCCCceeeee---ccCh-hhHHHHH-------HhCCcEeccccccchhhHHHHHhhcCeEEE
Q 011765 338 RGVVYTSWAPQLA---ILAHDSVGGFLT---HAGW-SSVVEAL-------QFGMPLIVLTCYADQGLNAKLLEEKQIVEL 403 (478)
Q Consensus 338 ~n~~~~~~vpq~~---vL~~~~~~~~It---HgG~-~s~~eal-------~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~ 403 (478)
+++.+..++|+.+ ++..+++ +|. +-|. +++.||+ ++|+|+|+... +.+...|..
T Consensus 265 ~~V~f~G~~~~~~l~~~~~~adv--~v~ps~~E~~~~~~lEAm~Kl~eYla~G~PVIas~~----------v~~~~~G~l 332 (406)
T 2hy7_A 265 DNVIVYGEMKHAQTIGYIKHARF--GIAPYASEQVPVYLADSSMKLLQYDFFGLPAVCPNA----------VVGPYKSRF 332 (406)
T ss_dssp TTEEEECCCCHHHHHHHHHTCSE--EECCBSCSCCCTTHHHHCHHHHHHHHHTCCEEEEGG----------GTCSCSSEE
T ss_pred CCEEEcCCCCHHHHHHHHHhcCE--EEECCCcccCchHHHHHHHHHHHHhhCCCcEEEehh----------cccCcceEE
Confidence 4899999998754 6777888 652 3344 6789999 99999999765 555556776
Q ss_pred -eeccCCCCcccHHHHHHHHHHHhc
Q 011765 404 -IPRDEGDGFFTRNSVAESLRLVLV 427 (478)
Q Consensus 404 -l~~~~~~~~~~~~~l~~~i~~ll~ 427 (478)
++.. +.++|+++|.++++
T Consensus 333 ~v~~~------d~~~la~ai~~ll~ 351 (406)
T 2hy7_A 333 GYTPG------NADSVIAAITQALE 351 (406)
T ss_dssp EECTT------CHHHHHHHHHHHHH
T ss_pred EeCCC------CHHHHHHHHHHHHh
Confidence 6553 88999999999998
No 46
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=98.61 E-value=2.8e-07 Score=79.53 Aligned_cols=141 Identities=9% Similarity=0.057 Sum_probs=91.5
Q ss_pred eEEEEeCcccCCCHHHHHHHHHHHHhC-CCCEEEEEecCCCCCCCCCCCCChhhh--hhcCCCcEEEeccCCh---hhhh
Q 011765 279 VVYVAFGSEAKPSQEELTEIALGLELS-KLPFFWVLKKRLGQADTEPIELPDGFE--ERTRGRGVVYTSWAPQ---LAIL 352 (478)
Q Consensus 279 ~v~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~p~~~~--~~~~~~n~~~~~~vpq---~~vL 352 (478)
.+++..|+.. ....+..++++++.. +.+++++-.+. ....+-.... +..-.+++.+..|+++ ..++
T Consensus 24 ~~i~~~G~~~--~~Kg~~~li~a~~~l~~~~l~i~G~~~------~~~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~ 95 (177)
T 2f9f_A 24 DFWLSVNRIY--PEKRIELQLEVFKKLQDEKLYIVGWFS------KGDHAERYARKIMKIAPDNVKFLGSVSEEELIDLY 95 (177)
T ss_dssp SCEEEECCSS--GGGTHHHHHHHHHHCTTSCEEEEBCCC------TTSTHHHHHHHHHHHSCTTEEEEESCCHHHHHHHH
T ss_pred CEEEEEeccc--cccCHHHHHHHHHhCCCcEEEEEecCc------cHHHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHH
Confidence 4556678765 345566677777765 45655543322 1111111111 1112358999999998 5577
Q ss_pred cCCCceeeee---ccCh-hhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcc
Q 011765 353 AHDSVGGFLT---HAGW-SSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVE 428 (478)
Q Consensus 353 ~~~~~~~~It---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~ 428 (478)
..+++ +|. +.|+ .++.||+++|+|+|+.. ...+...+.+.+.|..+ . -+.+++.++|.++++
T Consensus 96 ~~adi--~v~ps~~e~~~~~~~Eama~G~PvI~~~----~~~~~e~i~~~~~g~~~--~-----~d~~~l~~~i~~l~~- 161 (177)
T 2f9f_A 96 SRCKG--LLCTAKDEDFGLTPIEAMASGKPVIAVN----EGGFKETVINEKTGYLV--N-----ADVNEIIDAMKKVSK- 161 (177)
T ss_dssp HHCSE--EEECCSSCCSCHHHHHHHHTTCCEEEES----SHHHHHHCCBTTTEEEE--C-----SCHHHHHHHHHHHHH-
T ss_pred HhCCE--EEeCCCcCCCChHHHHHHHcCCcEEEeC----CCCHHHHhcCCCccEEe--C-----CCHHHHHHHHHHHHh-
Confidence 78888 665 3344 59999999999999964 35566666666788888 3 389999999999998
Q ss_pred cchHHH-HHHHHHHHH
Q 011765 429 EKGQIY-RDKAKEMKG 443 (478)
Q Consensus 429 ~~~~~~-~~~a~~~~~ 443 (478)
|++. ++++++.++
T Consensus 162 --~~~~~~~~~~~~a~ 175 (177)
T 2f9f_A 162 --NPDKFKKDCFRRAK 175 (177)
T ss_dssp --CTTTTHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHh
Confidence 4444 566655443
No 47
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=98.51 E-value=5.8e-06 Score=80.41 Aligned_cols=95 Identities=16% Similarity=0.198 Sum_probs=63.9
Q ss_pred cEEEeccCCh-hhhhcCCCceeeee---c--cChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCc
Q 011765 339 GVVYTSWAPQ-LAILAHDSVGGFLT---H--AGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGF 412 (478)
Q Consensus 339 n~~~~~~vpq-~~vL~~~~~~~~It---H--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~ 412 (478)
++.+.++..+ ..+++.+++ ++. . +|..++.||+++|+|+|+-|...+.......+.+.|.++.. .
T Consensus 261 ~v~~~~~~~dl~~~y~~aDv--~vl~ss~~e~gg~~~lEAmA~G~PVI~~~~~~~~~e~~~~~~~~G~l~~~---~---- 331 (374)
T 2xci_A 261 DVILVDRFGILKELYPVGKI--AIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFLEKEGAGFEV---K---- 331 (374)
T ss_dssp SEEECCSSSCHHHHGGGEEE--EEECSSSSSSCCCCCHHHHTTTCCEEECSCCTTSHHHHHHHHHTTCEEEC---C----
T ss_pred cEEEECCHHHHHHHHHhCCE--EEECCcccCCCCcCHHHHHHhCCCEEECCCccChHHHHHHHHHCCCEEEe---C----
Confidence 4555555444 557777776 553 2 23478999999999999877777777777666667876654 2
Q ss_pred ccHHHHHHHHHHHhcccchHHHHHHHHHHHH
Q 011765 413 FTRNSVAESLRLVLVEEKGQIYRDKAKEMKG 443 (478)
Q Consensus 413 ~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~ 443 (478)
+.++|+++|.++++++.-..+.+++++..+
T Consensus 332 -d~~~La~ai~~ll~d~~r~~mg~~ar~~~~ 361 (374)
T 2xci_A 332 -NETELVTKLTELLSVKKEIKVEEKSREIKG 361 (374)
T ss_dssp -SHHHHHHHHHHHHHSCCCCCHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 778999999999982111234455544443
No 48
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=98.38 E-value=8.7e-06 Score=80.23 Aligned_cols=84 Identities=17% Similarity=0.118 Sum_probs=57.4
Q ss_pred CcEEEeccCChhh---hhcCCCceeeee--c-cCh-hhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCC
Q 011765 338 RGVVYTSWAPQLA---ILAHDSVGGFLT--H-AGW-SSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGD 410 (478)
Q Consensus 338 ~n~~~~~~vpq~~---vL~~~~~~~~It--H-gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~ 410 (478)
.++.+..++++.+ +++.+++ ||. . =|. .++.||+++|+|+|+ -..+ ....+++-..|..++..
T Consensus 295 ~~v~f~G~~~~~~l~~~~~~adv--~v~pS~~E~~g~~~lEAmA~G~PVV~-~~~g----~~e~v~~~~~G~lv~~~--- 364 (413)
T 2x0d_A 295 IHLNSLGKLTLEDYADLLKRSSI--GISLMISPHPSYPPLEMAHFGLRVIT-NKYE----NKDLSNWHSNIVSLEQL--- 364 (413)
T ss_dssp EEEEEEESCCHHHHHHHHHHCCE--EECCCSSSSCCSHHHHHHHTTCEEEE-ECBT----TBCGGGTBTTEEEESSC---
T ss_pred CcEEEcCCCCHHHHHHHHHhCCE--EEEecCCCCCCcHHHHHHhCCCcEEE-eCCC----cchhhhcCCCEEEeCCC---
Confidence 4788889998754 5667887 663 2 133 578999999999998 3222 12234444578877764
Q ss_pred CcccHHHHHHHHHHHhcccchHHHHHH
Q 011765 411 GFFTRNSVAESLRLVLVEEKGQIYRDK 437 (478)
Q Consensus 411 ~~~~~~~l~~~i~~ll~~~~~~~~~~~ 437 (478)
++++|+++|.++++ |++.+++
T Consensus 365 ---d~~~la~ai~~ll~---~~~~~~~ 385 (413)
T 2x0d_A 365 ---NPENIAETLVELCM---SFNNRDV 385 (413)
T ss_dssp ---SHHHHHHHHHHHHH---HTC----
T ss_pred ---CHHHHHHHHHHHHc---CHHHHHH
Confidence 88999999999999 6666655
No 49
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=98.26 E-value=0.00058 Score=69.45 Aligned_cols=172 Identities=12% Similarity=0.044 Sum_probs=93.7
Q ss_pred ceEEEEeCcccC-CCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhh--hhcCCCcEEEeccCChh---hh
Q 011765 278 SVVYVAFGSEAK-PSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFE--ERTRGRGVVYTSWAPQL---AI 351 (478)
Q Consensus 278 ~~v~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~--~~~~~~n~~~~~~vpq~---~v 351 (478)
.++++..|.... ...+.+.+.+..+.+.+.+++++..+.. .....+. ......++.+....+.. .+
T Consensus 327 ~p~i~~vgRl~~~Kg~~~li~a~~~l~~~~~~l~l~G~G~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 398 (536)
T 3vue_A 327 IPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKK--------KFEKLLKSMEEKYPGKVRAVVKFNAPLAHLI 398 (536)
T ss_dssp SCEEEEECCBSGGGCHHHHHHHHHHHTTSSCEEEEECCBCH--------HHHHHHHHHHHHSTTTEEEECSCCHHHHHHH
T ss_pred CcEEEEEeeccccCChHHHHHHHHHhHhhCCeEEEEeccCc--------hHHHHHHHHHhhcCCceEEEEeccHHHHHHH
Confidence 356677787763 2233343433334445566655543321 0001111 11123467766666663 36
Q ss_pred hcCCCceeeeec---cCh-hhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCc----ccHHHHHHHHH
Q 011765 352 LAHDSVGGFLTH---AGW-SSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGF----FTRNSVAESLR 423 (478)
Q Consensus 352 L~~~~~~~~ItH---gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~----~~~~~l~~~i~ 423 (478)
++.+++ ||.= =|. .+++||+++|+|+|+... ......|.+-.-|........+|. .+.+.|+++|+
T Consensus 399 ~~~aD~--~v~PS~~E~fgl~~lEAma~G~PvI~s~~----gG~~e~V~dg~~G~~~~~~~~~g~l~~~~d~~~la~ai~ 472 (536)
T 3vue_A 399 MAGADV--LAVPSRFEPCGLIQLQGMRYGTPCACAST----GGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLK 472 (536)
T ss_dssp HHHCSE--EEECCSCCSSCSHHHHHHHTTCCEEECSC----THHHHHCCBTTTEEECCCCCSCTTCCCHHHHHHHHHHHH
T ss_pred HHhhhe--eecccccCCCCHHHHHHHHcCCCEEEcCC----CCchheeeCCCCccccccCCCceeEECCCCHHHHHHHHH
Confidence 677777 6632 233 489999999999999544 455555655556765544332222 25788999999
Q ss_pred HHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHhcc
Q 011765 424 LVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLKNHR 466 (478)
Q Consensus 424 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 466 (478)
++++--.++.+++.+++ .++..=+=++.++..++.++++.
T Consensus 473 ral~~~~~~~~~~~~~~---am~~~fSW~~~A~~y~~ly~~L~ 512 (536)
T 3vue_A 473 RAIKVVGTPAYEEMVRN---CMNQDLSWKGPAKNWENVLLGLG 512 (536)
T ss_dssp HHHHHTTSHHHHHHHHH---HHHSCCSSHHHHHHHHHHHHTTC
T ss_pred HHHHhcCcHHHHHHHHH---HHHhcCCHHHHHHHHHHHHHHhh
Confidence 88751114544432221 22222233677777788777654
No 50
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=98.10 E-value=0.00071 Score=68.63 Aligned_cols=147 Identities=11% Similarity=0.079 Sum_probs=93.8
Q ss_pred ceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEE--ecCCCCCCCCCCCCChhhh-hhcCCCcEEEeccCChhhhh--
Q 011765 278 SVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVL--KKRLGQADTEPIELPDGFE-ERTRGRGVVYTSWAPQLAIL-- 352 (478)
Q Consensus 278 ~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~--~~~~~~~~~~~~~~p~~~~-~~~~~~n~~~~~~vpq~~vL-- 352 (478)
.++|.+|++..+..++.+....+-+++.+..++|.. +...+ ....+-..+. ... .+.+++...+|..+.+
T Consensus 441 ~v~Fg~fn~~~Ki~p~~l~~WarIL~~vP~s~L~l~~~g~~~g----~~~~~~~~~~~~GI-~~Rv~F~g~~p~~e~la~ 515 (631)
T 3q3e_A 441 VVNIGIASTTMKLNPYFLEALKAIRDRAKVKVHFHFALGQSNG----ITHPYVERFIKSYL-GDSATAHPHSPYHQYLRI 515 (631)
T ss_dssp EEEEEEEECSTTCCHHHHHHHHHHHHHCSSEEEEEEEESSCCG----GGHHHHHHHHHHHH-GGGEEEECCCCHHHHHHH
T ss_pred eEEEEECCccccCCHHHHHHHHHHHHhCCCcEEEEEecCCCch----hhHHHHHHHHHcCC-CccEEEcCCCCHHHHHHH
Confidence 599999999999888888888888888777777754 21110 0000001111 111 2467788888876644
Q ss_pred -cCCCceeee---eccChhhHHHHHHhCCcEeccccc-cchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhc
Q 011765 353 -AHDSVGGFL---THAGWSSVVEALQFGMPLIVLTCY-ADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLV 427 (478)
Q Consensus 353 -~~~~~~~~I---tHgG~~s~~eal~~GvP~l~~P~~-~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~ 427 (478)
..+++ |+ ..+|.+|++|||++|||+|..+-. .--..-+..+...|+..++-. -+.++..+...++.+
T Consensus 516 y~~aDI--fLDpfpy~GgtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~~GLpE~LIA------~d~eeYv~~Av~La~ 587 (631)
T 3q3e_A 516 LHNCDM--MVNPFPFGNTNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLIA------NTVDEYVERAVRLAE 587 (631)
T ss_dssp HHTCSE--EECCSSSCCSHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHTTCCGGGEE------SSHHHHHHHHHHHHH
T ss_pred HhcCcE--EEeCCcccCChHHHHHHHcCCCEEeccCCcHHHHhHHHHHHhcCCCcceec------CCHHHHHHHHHHHhC
Confidence 56666 66 347789999999999999998732 112233444566787654222 267777777778888
Q ss_pred ccchHHHHHHHHH
Q 011765 428 EEKGQIYRDKAKE 440 (478)
Q Consensus 428 ~~~~~~~~~~a~~ 440 (478)
|++.++++++
T Consensus 588 ---D~~~l~~LR~ 597 (631)
T 3q3e_A 588 ---NHQERLELRR 597 (631)
T ss_dssp ---CHHHHHHHHH
T ss_pred ---CHHHHHHHHH
Confidence 6666555543
No 51
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=97.66 E-value=0.0026 Score=60.84 Aligned_cols=105 Identities=10% Similarity=0.085 Sum_probs=73.6
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCccccCCCCCCCCCCCeE-EEEecCCCCCCCCCCccccC
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQK--GHKIFFISTPRNIDRLPRLPQNLASMIQ-FVKISLPHVDNLRENAEATI 81 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~g~~~~~~i~-~~~i~~~~~~~l~~~~~~~~ 81 (478)
+++|||++-..+.|++.-+..+.++|+++ +.+|++++.+.+.+.++.. +.+. ++.++ ..
T Consensus 7 ~~~~iLvi~~~~lGD~i~~~P~l~~L~~~~P~a~I~~l~~~~~~~l~~~~-----p~vd~vi~~~----~~--------- 68 (349)
T 3tov_A 7 DYKRIVVTFLMHLGDVILTTPFLEVLRKAAPHSHITYVIDEKLQQVMEYN-----PNIDELIVVD----KK--------- 68 (349)
T ss_dssp TTCEEEEECCCCHHHHHTTHHHHHHHHHHCTTSEEEEEEEGGGGGGTSSC-----TTCSEEEEEC----CS---------
T ss_pred CCCEEEEEecCcccHHHHHHHHHHHHHHHCCCCEEEEEECcchhHHHhcC-----CCccEEEEeC----cc---------
Confidence 36899999999999999999999999997 9999999999998877653 3343 44443 10
Q ss_pred CCChhHHHHHHHHHhhhhHHHHHHHhhcCC-CEEEEcCCcccHHHHHHHhCCCeEE
Q 011765 82 DLPYDEVKYLKQSFDCLEEPMAKLLQSLAP-DWLLFDFAAYWLPARARELGIPSGF 136 (478)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p-D~vI~D~~~~~~~~~A~~lgIP~i~ 136 (478)
.. ...+. .+. .+...+++.++ |++|.=....-...++...|+|...
T Consensus 69 --~~--~~~~~----~~~-~l~~~Lr~~~y~D~vidl~~~~rs~~l~~~~~a~~ri 115 (349)
T 3tov_A 69 --GR--HNSIS----GLN-EVAREINAKGKTDIVINLHPNERTSYLAWKIHAPITT 115 (349)
T ss_dssp --SH--HHHHH----HHH-HHHHHHHHHCCCCEEEECCCSHHHHHHHHHHCCSEEE
T ss_pred --cc--cccHH----HHH-HHHHHHhhCCCCeEEEECCCChHHHHHHHHhCCCeEE
Confidence 00 00011 111 23445567799 9999665554556778888999754
No 52
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=97.65 E-value=0.00024 Score=59.93 Aligned_cols=136 Identities=13% Similarity=0.207 Sum_probs=77.3
Q ss_pred ceEEEEeCcccCCCHHHHHHHHHHHHhCC--CCEEEEEecCCCCCCCCCCCCChhhhhhcC--CCcEEEeccCChh---h
Q 011765 278 SVVYVAFGSEAKPSQEELTEIALGLELSK--LPFFWVLKKRLGQADTEPIELPDGFEERTR--GRGVVYTSWAPQL---A 350 (478)
Q Consensus 278 ~~v~vs~Gs~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~--~~n~~~~~~vpq~---~ 350 (478)
+++++..|+... ...+..+++++..+. .++.+.+-+. +...+.+.+..+ ..++.+ .|+|+. .
T Consensus 2 ~~~i~~~G~~~~--~Kg~~~li~a~~~l~~~~~~~l~i~G~--------g~~~~~~~~~~~~~~~~v~~-g~~~~~~~~~ 70 (166)
T 3qhp_A 2 PFKIAMVGRYSN--EKNQSVLIKAVALSKYKQDIVLLLKGK--------GPDEKKIKLLAQKLGVKAEF-GFVNSNELLE 70 (166)
T ss_dssp CEEEEEESCCST--TTTHHHHHHHHHTCTTGGGEEEEEECC--------STTHHHHHHHHHHHTCEEEC-CCCCHHHHHH
T ss_pred ceEEEEEeccch--hcCHHHHHHHHHHhccCCCeEEEEEeC--------CccHHHHHHHHHHcCCeEEE-eecCHHHHHH
Confidence 477888888763 344556666665543 2333333322 111122222221 126777 899874 4
Q ss_pred hhcCCCceeeee----ccChhhHHHHHHhCC-cEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHH
Q 011765 351 ILAHDSVGGFLT----HAGWSSVVEALQFGM-PLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLV 425 (478)
Q Consensus 351 vL~~~~~~~~It----HgG~~s~~eal~~Gv-P~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~l 425 (478)
++..+++ +|. -|.-.++.||+++|+ |+|+....+ .....+.+.+. .++. -+.+++.++|.++
T Consensus 71 ~~~~adv--~v~ps~~e~~~~~~~Eama~G~vPvi~~~~~~---~~~~~~~~~~~--~~~~------~~~~~l~~~i~~l 137 (166)
T 3qhp_A 71 ILKTCTL--YVHAANVESEAIACLEAISVGIVPVIANSPLS---ATRQFALDERS--LFEP------NNAKDLSAKIDWW 137 (166)
T ss_dssp HHTTCSE--EEECCCSCCCCHHHHHHHHTTCCEEEECCTTC---GGGGGCSSGGG--EECT------TCHHHHHHHHHHH
T ss_pred HHHhCCE--EEECCcccCccHHHHHHHhcCCCcEEeeCCCC---chhhhccCCce--EEcC------CCHHHHHHHHHHH
Confidence 6777887 664 233469999999996 999933211 11111122222 3333 3899999999999
Q ss_pred hcccchHHHHHHHHH
Q 011765 426 LVEEKGQIYRDKAKE 440 (478)
Q Consensus 426 l~~~~~~~~~~~a~~ 440 (478)
++ |++.++++.+
T Consensus 138 ~~---~~~~~~~~~~ 149 (166)
T 3qhp_A 138 LE---NKLERERMQN 149 (166)
T ss_dssp HH---CHHHHHHHHH
T ss_pred Hh---CHHHHHHHHH
Confidence 99 6665544433
No 53
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.60 E-value=0.00045 Score=72.79 Aligned_cols=184 Identities=15% Similarity=0.154 Sum_probs=110.1
Q ss_pred CCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhh-hcCCCcEEEeccCChhhhh-
Q 011765 275 EKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEE-RTRGRGVVYTSWAPQLAIL- 352 (478)
Q Consensus 275 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~-~~~~~n~~~~~~vpq~~vL- 352 (478)
+++.+||.||....+.+++.+..-++-|++.+--.+|....... ....+-..+.+ .+..+.+++.+..|..+-|
T Consensus 520 p~~~v~f~~fN~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~~----~~~~l~~~~~~~gi~~~r~~f~~~~~~~~~l~ 595 (723)
T 4gyw_A 520 PEDAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAV----GEPNIQQYAQNMGLPQNRIIFSPVAPKEEHVR 595 (723)
T ss_dssp CTTSEEEECCSCGGGCCHHHHHHHHHHHHHCSSEEEEEEETTGG----GHHHHHHHHHHTTCCGGGEEEEECCCHHHHHH
T ss_pred CCCCEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEeCcHH----HHHHHHHHHHhcCCCcCeEEECCCCCHHHHHH
Confidence 34569999999999999998888888888888888888764321 01111111111 1224568888888876544
Q ss_pred --cCCCceeee---eccChhhHHHHHHhCCcEecccc-ccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHh
Q 011765 353 --AHDSVGGFL---THAGWSSVVEALQFGMPLIVLTC-YADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVL 426 (478)
Q Consensus 353 --~~~~~~~~I---tHgG~~s~~eal~~GvP~l~~P~-~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll 426 (478)
..+|+ ++ ..+|.+|++|||++|||+|.++= ..=...-+..+..+|+...+-. |.++-.+...++-
T Consensus 596 ~~~~~Di--~LDt~p~~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~gl~e~ia~-------~~~~Y~~~a~~la 666 (723)
T 4gyw_A 596 RGQLADV--CLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAK-------NRQEYEDIAVKLG 666 (723)
T ss_dssp HGGGCSE--EECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHHTCGGGBCS-------SHHHHHHHHHHHH
T ss_pred HhCCCeE--EeCCCCcCCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHcCCcccccC-------CHHHHHHHHHHHh
Confidence 34554 76 47889999999999999999992 2333445666777788765532 4455444444555
Q ss_pred cccchHHHHHHHH-HHHHHhcccC--ChHHHHHHHHHHHH----hccccCCCccc
Q 011765 427 VEEKGQIYRDKAK-EMKGLFGDKG--RHDRYVDNFLNYLK----NHRCLRKGEEI 474 (478)
Q Consensus 427 ~~~~~~~~~~~a~-~~~~~~~~~~--~~~~~~~~i~~~~~----~~~~~~~~~~~ 474 (478)
. |.+.++..+ +|++.+...+ ...+.+..+++.++ +...+..+.||
T Consensus 667 ~---d~~~l~~lr~~l~~~~~~s~l~d~~~~~~~le~a~~~~w~r~~~G~~p~~~ 718 (723)
T 4gyw_A 667 T---DLEYLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQMWEHYAAGNKPDHM 718 (723)
T ss_dssp H---CHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHHHHHHTTCCCCCB
T ss_pred c---CHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 5 444444332 3333332211 22334444444443 33455666665
No 54
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=97.47 E-value=0.0019 Score=56.14 Aligned_cols=76 Identities=13% Similarity=0.097 Sum_probs=57.7
Q ss_pred cEEE-eccCCh---hhhhcCCCceeeeec---cC-hhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCC
Q 011765 339 GVVY-TSWAPQ---LAILAHDSVGGFLTH---AG-WSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGD 410 (478)
Q Consensus 339 n~~~-~~~vpq---~~vL~~~~~~~~ItH---gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~ 410 (478)
++.+ ..++++ ..++..+++ +|.- -| ..++.||+++|+|+|+... ......+ ..+.|..++..
T Consensus 96 ~v~~~~g~~~~~~~~~~~~~ad~--~l~ps~~e~~~~~~~Ea~a~G~PvI~~~~----~~~~e~~-~~~~g~~~~~~--- 165 (200)
T 2bfw_A 96 NVKVITEMLSREFVRELYGSVDF--VIIPSYFEPFGLVALEAMCLGAIPIASAV----GGLRDII-TNETGILVKAG--- 165 (200)
T ss_dssp TEEEECSCCCHHHHHHHHTTCSE--EEECCSCCSSCHHHHHHHHTTCEEEEESC----HHHHHHC-CTTTCEEECTT---
T ss_pred CEEEEeccCCHHHHHHHHHHCCE--EEECCCCCCccHHHHHHHHCCCCEEEeCC----CChHHHc-CCCceEEecCC---
Confidence 7888 899985 457778888 6632 23 4689999999999999654 3455555 55678777653
Q ss_pred CcccHHHHHHHHHHHhc
Q 011765 411 GFFTRNSVAESLRLVLV 427 (478)
Q Consensus 411 ~~~~~~~l~~~i~~ll~ 427 (478)
+.+++.++|.++++
T Consensus 166 ---~~~~l~~~i~~l~~ 179 (200)
T 2bfw_A 166 ---DPGELANAILKALE 179 (200)
T ss_dssp ---CHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHh
Confidence 78999999999997
No 55
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=97.44 E-value=0.0022 Score=61.22 Aligned_cols=104 Identities=13% Similarity=0.057 Sum_probs=68.6
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCccccCCCCCCCCCCCe-EEEEecCCCCCCCCCCccccCCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQK--GHKIFFISTPRNIDRLPRLPQNLASMI-QFVKISLPHVDNLRENAEATIDL 83 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~g~~~~~~i-~~~~i~~~~~~~l~~~~~~~~~~ 83 (478)
||||++...+.|++.-+..+.++|+++ +.+|++++.+.+.+.++.. +.+ +++.++. . ..
T Consensus 1 mkILii~~~~~GD~i~~~p~l~~Lk~~~P~~~i~~l~~~~~~~l~~~~-----p~i~~v~~~~~--------~-----~~ 62 (348)
T 1psw_A 1 MKILVIGPSWVGDMMMSQSLYRTLQARYPQAIIDVMAPAWCRPLLSRM-----PEVNEAIPMPL--------G-----HG 62 (348)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHSTTCEEEEEECGGGHHHHTTC-----TTEEEEEEC------------------
T ss_pred CeEEEEeccccCHHHHHHHHHHHHHHHCCCCEEEEEECcchhHHHhcC-----CccCEEEEecC--------C-----cc
Confidence 799999999899999999999999987 9999999998877665443 334 3333320 0 00
Q ss_pred ChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEE
Q 011765 84 PYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFF 137 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~ 137 (478)
.. ... ....+.+.+++.+||++|.-....-...++...|+|....
T Consensus 63 ~~--------~~~-~~~~l~~~l~~~~~D~vid~~~~~~sa~~~~~~~~~~~ig 107 (348)
T 1psw_A 63 AL--------EIG-ERRKLGHSLREKRYDRAYVLPNSFKSALVPLFAGIPHRTG 107 (348)
T ss_dssp ----------CHH-HHHHHHHHTTTTTCSEEEECSCCSGGGHHHHHTTCSEEEE
T ss_pred cc--------chH-HHHHHHHHHHhcCCCEEEECCCChHHHHHHHHhCCCEEec
Confidence 00 000 1124455667789999993222334557788889997433
No 56
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=97.26 E-value=0.00057 Score=65.03 Aligned_cols=108 Identities=13% Similarity=0.135 Sum_probs=81.2
Q ss_pred cEEEeccCChhhh---hcCCCceeeeeccCh---------hhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeec
Q 011765 339 GVVYTSWAPQLAI---LAHDSVGGFLTHAGW---------SSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPR 406 (478)
Q Consensus 339 n~~~~~~vpq~~v---L~~~~~~~~ItHgG~---------~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~ 406 (478)
|+.+..|+|..++ |+.++.+++.+-+.+ +-+.|++++|+|+|+. +...++..+++.|+|...+
T Consensus 215 nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~----~~~~~~~~v~~~~~G~~~~- 289 (339)
T 3rhz_A 215 NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQ----EGIANQELIENNGLGWIVK- 289 (339)
T ss_dssp TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEE----TTCTTTHHHHHHTCEEEES-
T ss_pred CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEc----cChhHHHHHHhCCeEEEeC-
Confidence 8999999999775 445566555533322 4588999999999984 4567888999999999884
Q ss_pred cCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHH
Q 011765 407 DEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFL 459 (478)
Q Consensus 407 ~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~ 459 (478)
+.+++.+++..+..++ -.++++|+++.++.++.+-.+.+++...+
T Consensus 290 -------~~~e~~~~i~~l~~~~-~~~m~~na~~~a~~~~~~~f~k~~l~~~~ 334 (339)
T 3rhz_A 290 -------DVEEAIMKVKNVNEDE-YIELVKNVRSFNPILRKGFFTRRLLTESV 334 (339)
T ss_dssp -------SHHHHHHHHHHCCHHH-HHHHHHHHHHHTHHHHTTHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHhCHHH-HHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 4578888888876532 46789999999999887777766664443
No 57
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=96.61 E-value=0.02 Score=53.96 Aligned_cols=45 Identities=11% Similarity=0.076 Sum_probs=40.6
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCccccCCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQK--GHKIFFISTPRNIDRLPR 51 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~ 51 (478)
||||++-..+.|++.-+..+.++|+++ +.+|++++.+.+.+.++.
T Consensus 1 ~~ILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~ 47 (326)
T 2gt1_A 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIKFDWVVEEGFAQIPSW 47 (326)
T ss_dssp CEEEEECCCCHHHHHHHHHHHHHHHHHSTTCEEEEEEEGGGTHHHHT
T ss_pred CeEEEEeccccchHHhHHHHHHHHHHhCCCCEEEEEEehhhhHHHhc
Confidence 799999999999999999999999997 999999999988776544
No 58
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0
Probab=93.46 E-value=0.13 Score=46.06 Aligned_cols=117 Identities=18% Similarity=0.194 Sum_probs=62.4
Q ss_pred CCCCCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCcccc
Q 011765 1 MADNSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEAT 80 (478)
Q Consensus 1 ~~~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~ 80 (478)
|..+++||||+.-==+. |---+..|+++|.+ +|+|+++.+...+.-+... -.....+.+..+. ++ ....
T Consensus 6 ~~~~~~m~ILlTNDDGi-~apGi~aL~~~l~~-~~~V~VVAP~~~~Sg~g~s-iTl~~pl~~~~~~----~~----~~~v 74 (261)
T 3ty2_A 6 KTATPKLRLLLSNDDGV-YAKGLAILAKTLAD-LGEVDVVAPDRNRSGASNS-LTLNAPLHIKNLE----NG----MISV 74 (261)
T ss_dssp -----CCEEEEECSSCT-TCHHHHHHHHHHTT-TSEEEEEEESSCCTTCTTC-CCCSSCEEEEECT----TS----CEEE
T ss_pred hccCCCCeEEEEcCCCC-CCHHHHHHHHHHHh-cCCEEEEecCCCCcCcccc-eecCCCeEEEEec----CC----eEEE
Confidence 44567899999865554 33447888999987 8999999998876543321 1122334544432 11 1111
Q ss_pred CCCChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcC---------CcccHH----HHHHHhCCCeEEEec
Q 011765 81 IDLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDF---------AAYWLP----ARARELGIPSGFFSI 139 (478)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~---------~~~~~~----~~A~~lgIP~i~~~~ 139 (478)
...+. +...-.+..++ ..+||+||+.. ..+.|. +-|..+|||.|.++.
T Consensus 75 ~GTPa----------DCV~lal~~l~-~~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~ 135 (261)
T 3ty2_A 75 EGTPT----------DCVHLAITGVL-PEMPDMVVAGINAGPNLGDDVWYSGTVAAAMEGRFLGLPALAVSL 135 (261)
T ss_dssp SSCHH----------HHHHHHTTTTS-SSCCSEEEEEEEESCCCGGGGGTCHHHHHC-CCSTTSCCEEEEEE
T ss_pred CCCHH----------HHHHHHHHHhc-CCCCCEEEECCcCCCCCCCCcCCchHHHHHHHHHHcCCCeEEEEc
Confidence 11121 11111222333 35899999753 122233 234667999999865
No 59
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=93.26 E-value=0.67 Score=41.25 Aligned_cols=114 Identities=18% Similarity=0.226 Sum_probs=66.6
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCCh
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPY 85 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~ 85 (478)
+||||+..==+. |---+..|+++|.+.| +|+++.+...+.-+...- .....+.+..+. .+.. ......+
T Consensus 1 ~M~ILlTNDDGi-~apGi~aL~~~l~~~g-~V~VVAP~~~~Sg~g~si-t~~~pl~~~~~~----~~~~---~~v~GTP- 69 (251)
T 2phj_A 1 MPTFLLVNDDGY-FSPGINALREALKSLG-RVVVVAPDRNLSGVGHSL-TFTEPLKMRKID----TDFY---TVIDGTP- 69 (251)
T ss_dssp -CEEEEECSSCT-TCHHHHHHHHHHTTTS-EEEEEEESSCCTTSCCSC-CCSSCEEEEEEE----TTEE---EETTCCH-
T ss_pred CCEEEEECCCCC-CCHHHHHHHHHHHhcC-CEEEEecCCCccCCccce-ecCCCeEEEEec----CCCe---EEECCCH-
Confidence 488888765444 3344788999999988 999999988765443211 222335555553 1100 1111111
Q ss_pred hHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcC----------Ccc---cHHHHHHHhCCCeEEEec
Q 011765 86 DEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDF----------AAY---WLPARARELGIPSGFFSI 139 (478)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~----------~~~---~~~~~A~~lgIP~i~~~~ 139 (478)
.+...-.+..++...+||+||+.. +.+ .|++-|..+|||.|.++.
T Consensus 70 ---------aDCV~lal~~l~~~~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~ 127 (251)
T 2phj_A 70 ---------ADCVHLGYRVILEEKKPDLVLSGINEGPNLGEDITYSGTVSGAMEGRILGIPSIAFSA 127 (251)
T ss_dssp ---------HHHHHHHHHTTTTTCCCSEEEEEEESSCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEE
T ss_pred ---------HHHHHHHHHHhcCCCCCCEEEECCcCCCcCCCCCccchHHHHHHHHHHcCCCeEEEEc
Confidence 112222444555446899999753 222 234557888999999865
No 60
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=91.16 E-value=13 Score=36.83 Aligned_cols=111 Identities=15% Similarity=0.081 Sum_probs=73.1
Q ss_pred cEEEeccCChhh---hhcCCCceeee---eccChh-hHHHHHHhC---CcEeccccccchhhHHHHHhhcCeEEEeeccC
Q 011765 339 GVVYTSWAPQLA---ILAHDSVGGFL---THAGWS-SVVEALQFG---MPLIVLTCYADQGLNAKLLEEKQIVELIPRDE 408 (478)
Q Consensus 339 n~~~~~~vpq~~---vL~~~~~~~~I---tHgG~~-s~~eal~~G---vP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~ 408 (478)
.+++...+|+.+ ++..+++ || .+=|+| +..||+++| .|+|+--+.+ .+.-+.+ -|+.++..
T Consensus 353 ~V~f~g~v~~~el~aly~~ADv--~vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~aG----a~~~l~~--~allVnP~- 423 (496)
T 3t5t_A 353 TVRIDNDNDVNHTIACFRRADL--LIFNSTVDGQNLSTFEAPLVNERDADVILSETCG----AAEVLGE--YCRSVNPF- 423 (496)
T ss_dssp SEEEEECCCHHHHHHHHHHCSE--EEECCSSBSCCSHHHHHHHHCSSCCEEEEETTBT----THHHHGG--GSEEECTT-
T ss_pred CEEEeCCCCHHHHHHHHHhccE--EEECcccccCChhHHHHHHhCCCCCCEEEeCCCC----CHHHhCC--CEEEECCC-
Confidence 466667788744 5556777 55 246887 568999996 6666654433 2222211 36777764
Q ss_pred CCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHhc
Q 011765 409 GDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLKNH 465 (478)
Q Consensus 409 ~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (478)
+.+.++++|.++|+.. .++-+++.+++.+.+.+ .....-++.+++.++..
T Consensus 424 -----D~~~lA~AI~~aL~m~-~~er~~r~~~~~~~V~~-~d~~~W~~~fl~~L~~~ 473 (496)
T 3t5t_A 424 -----DLVEQAEAISAALAAG-PRQRAEAAARRRDAARP-WTLEAWVQAQLDGLAAD 473 (496)
T ss_dssp -----BHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHTT-CBHHHHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHhhc
Confidence 8999999999999832 24567777888777754 34556667777777543
No 61
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus}
Probab=90.67 E-value=1.8 Score=38.68 Aligned_cols=114 Identities=18% Similarity=0.210 Sum_probs=63.5
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCCh
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPY 85 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~ 85 (478)
|+|||+.-==+. +---+..|+++|.+.| +|+++.+...+.-+...- .....+++..+. .. ........+
T Consensus 1 Mp~ILlTNDDGi-~apGi~~L~~~l~~~g-~V~VvAP~~~~Sg~g~si-T~~~pl~~~~~~----~~---~~~~v~GTP- 69 (251)
T 2wqk_A 1 MPTFLLVNDDGY-FSPGINALREALKSLG-RVVVVAPDRNLSGVGHSL-TFTEPLKMRKID----TD---FYTVIDGTP- 69 (251)
T ss_dssp -CEEEEECSSCT-TCHHHHHHHHHHTTTS-EEEEEEESSCCTTSCCSC-CCSSCEEEEEEE----TT---EEEETTCCH-
T ss_pred CCEEEEEcCCCC-CcHHHHHHHHHHHhCC-CEEEEeeCCCCcccccCc-CCCCCceeEEee----cc---ceeecCCCh-
Confidence 356776643332 2233778899999998 599888877765433211 222335555443 11 000001111
Q ss_pred hHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcC----------Ccc---cHHHHHHHhCCCeEEEec
Q 011765 86 DEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDF----------AAY---WLPARARELGIPSGFFSI 139 (478)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~----------~~~---~~~~~A~~lgIP~i~~~~ 139 (478)
.+...-.+..++.+.+||+||+.. +.+ .|++-|..+|||.|.++.
T Consensus 70 ---------aDCV~lal~~~l~~~~PDLVvSGIN~G~N~g~dv~ySGTVgAA~Ea~~~GipaIA~S~ 127 (251)
T 2wqk_A 70 ---------ADCVHLGYRVILEEKKPDLVLSGINEGPNLGEDITYSGTVSGAMEGRILGIPSIAFSA 127 (251)
T ss_dssp ---------HHHHHHHHHTTTTTCCCSEEEEEEESSCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEE
T ss_pred ---------HHHHhhhhhhhcCCCCCCEEEeCccCCCccccceecchHHHHHHHHHhcCCCeEEEEc
Confidence 112222455566677999999842 222 345667889999999864
No 62
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=89.76 E-value=5.7 Score=33.22 Aligned_cols=134 Identities=12% Similarity=0.009 Sum_probs=67.6
Q ss_pred hhHhhhcccCCCCceEEEEeCc-ccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEe
Q 011765 265 RSIKEWLDEQEKGSVVYVAFGS-EAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYT 343 (478)
Q Consensus 265 ~~~~~~l~~~~~~~~v~vs~Gs-~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~ 343 (478)
.++-++|-..+ ..+||-|. .. ......++..+.+-+.+-++... ....+... -...+++
T Consensus 35 ~~lg~~La~~g---~~lVsGGg~~G-----im~aa~~gAl~~gG~tigVlP~~-------~~~~~~~~-----~~~~i~~ 94 (176)
T 2iz6_A 35 NELGKQIATHG---WILLTGGRSLG-----VMHEAMKGAKEAGGTTIGVLPGP-------DTSEISDA-----VDIPIVT 94 (176)
T ss_dssp HHHHHHHHHTT---CEEEEECSSSS-----HHHHHHHHHHHTTCCEEEEECC------------CCTT-----CSEEEEC
T ss_pred HHHHHHHHHCC---CEEEECCCccC-----HhHHHHHHHHHcCCEEEEEeCch-------hhhhhccC-----CceeEEc
Confidence 44556665543 66677665 33 23334445445566666666421 11111110 0124445
Q ss_pred ccCCh-hhhhcCCCceeeeeccChhhHHHH---HHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHH
Q 011765 344 SWAPQ-LAILAHDSVGGFLTHAGWSSVVEA---LQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVA 419 (478)
Q Consensus 344 ~~vpq-~~vL~~~~~~~~ItHgG~~s~~ea---l~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~ 419 (478)
.+.+. ..++..-+-..++-=||.||+.|+ +.+++|++.+|.|. .....+.........-. + +++++.
T Consensus 95 ~~~~~Rk~~m~~~sda~IvlpGg~GTL~E~~~al~~~kpV~~l~~~~---~~~gfi~~~~~~~i~~~-~-----~~~e~~ 165 (176)
T 2iz6_A 95 GLGSARDNINALSSNVLVAVGMGPGTAAEVALALKAKKPVVLLGTQP---EAEKFFTSLDAGLVHVA-A-----DVAGAI 165 (176)
T ss_dssp CCCSSSCCCCGGGCSEEEEESCCHHHHHHHHHHHHTTCCEEEESCCH---HHHHHHHHHCTTTEEEE-S-----SHHHHH
T ss_pred CCHHHHHHHHHHhCCEEEEecCCccHHHHHHHHHHhCCcEEEEcCcc---cccccCChhhcCeEEEc-C-----CHHHHH
Confidence 55555 334432222346667888886655 77999999999843 11112222222222222 2 677777
Q ss_pred HHHHHHhc
Q 011765 420 ESLRLVLV 427 (478)
Q Consensus 420 ~~i~~ll~ 427 (478)
+.+++.+.
T Consensus 166 ~~l~~~~~ 173 (176)
T 2iz6_A 166 AAVKQLLA 173 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766554
No 63
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=89.31 E-value=0.54 Score=37.61 Aligned_cols=50 Identities=12% Similarity=0.109 Sum_probs=35.9
Q ss_pred CCCCCccEEEEe-cCCCc-cCHHHHHHHHHHHHhCCCeEEEEeCCCccccCC
Q 011765 1 MADNSKLQIAMF-PWLAF-GHMIPWLELAKLIAQKGHKIFFISTPRNIDRLP 50 (478)
Q Consensus 1 ~~~~~~~~il~~-~~~~~-gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 50 (478)
|...+.||+|++ ..|-. ..+--.+-++..|.++||+|++++++.....++
T Consensus 1 ~~~~~~m~~LilLGCPE~Pvq~p~~lYl~~~Lk~~G~~v~VA~npAAlkLle 52 (157)
T 1kjn_A 1 MKTESTGKALMVLGCPESPVQIPLAIYTSHKLKKKGFRVTVTANPAALRLVQ 52 (157)
T ss_dssp -----CCEEEEECCCSCSTTHHHHHHHHHHHHHHTTCEEEEEECHHHHHHHH
T ss_pred CccccceeeeEEecCCCCcchhhHHHHHHHHHHhcCCeeEEecCHHHHhhee
Confidence 566678998775 44544 666668889999999999999999998766554
No 64
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=87.77 E-value=4.1 Score=33.77 Aligned_cols=140 Identities=14% Similarity=0.084 Sum_probs=78.6
Q ss_pred CceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCC
Q 011765 277 GSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDS 356 (478)
Q Consensus 277 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~ 356 (478)
+|.|-|-+||.+ +....++..+.|++++..+-..+. ..-..|+.+. +|+-..+ ...
T Consensus 22 kp~V~IimGS~S--D~~v~~~a~~~L~~~gI~~e~~V~--------SAHRtp~~l~-----------~~~~~a~---~~g 77 (181)
T 4b4k_A 22 KSLVGVIMGSTS--DWETMKYACDILDELNIPYEKKVV--------SAHRTPDYMF-----------EYAETAR---ERG 77 (181)
T ss_dssp CCSEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEEC--------CTTTSHHHHH-----------HHHHHTT---TTT
T ss_pred CccEEEEECCHh--HHHHHHHHHHHHHHcCCCeeEEEE--------ccccChHHHH-----------HHHHHHH---hcC
Confidence 567888899877 778888899999999988644443 2234554322 1211111 112
Q ss_pred ceeeeeccChh----hHHHHHHhCCcEecccccc---chhhHHHHHhhc--CeEEEe-eccCCCCcccHHHHHHHHHHHh
Q 011765 357 VGGFLTHAGWS----SVVEALQFGMPLIVLTCYA---DQGLNAKLLEEK--QIVELI-PRDEGDGFFTRNSVAESLRLVL 426 (478)
Q Consensus 357 ~~~~ItHgG~~----s~~eal~~GvP~l~~P~~~---DQ~~na~~v~~~--g~G~~l-~~~~~~~~~~~~~l~~~i~~ll 426 (478)
++++|.=+|.- ++..+ ..-+|+|++|... +-.+.-.-+.++ |+.+.- .... .|-.++.-++..|-. +
T Consensus 78 ~~ViIa~AG~aahLpGvvAa-~T~~PVIGVPv~s~~l~G~DsLlSivQMP~GvpVaTvaig~-~ga~NAallA~qILa-~ 154 (181)
T 4b4k_A 78 LKVIIAGAGGAAHLPGMVAA-KTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGK-AGSTNAGLLAAQILG-S 154 (181)
T ss_dssp CCEEEEEECSSCCHHHHHHT-TCCSCEEEEECCCTTTTTHHHHHHHHTCCTTCCCEECCSSH-HHHHHHHHHHHHHHT-T
T ss_pred ceEEEEeccccccchhhHHh-cCCCCEEEEecCCCCccchhhHHHHHhCCCCCceEEEecCC-ccHHHHHHHHHHHHc-c
Confidence 23377666543 33333 3456999999853 445555566666 554433 2110 000233334433322 2
Q ss_pred cccchHHHHHHHHHHHHHhc
Q 011765 427 VEEKGQIYRDKAKEMKGLFG 446 (478)
Q Consensus 427 ~~~~~~~~~~~a~~~~~~~~ 446 (478)
. |++++++++.+++...
T Consensus 155 ~---d~~l~~kl~~~r~~~~ 171 (181)
T 4b4k_A 155 F---HDDIHDALELRREAIE 171 (181)
T ss_dssp T---CHHHHHHHHHHHHHHH
T ss_pred C---CHHHHHHHHHHHHHHH
Confidence 3 6889999988887754
No 65
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=87.27 E-value=6.2 Score=35.71 Aligned_cols=113 Identities=18% Similarity=0.067 Sum_probs=63.0
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChh
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYD 86 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~ 86 (478)
||||+.-==+. +---+..|+++|++.| +|+++.+...+.-+...- .+...+++..++.. + .........+.
T Consensus 1 M~ILlTNDDGi-~ApGi~aL~~aL~~~g-~V~VVAP~~~qSg~g~si-Tl~~pl~~~~~~~~---~--~~~~~v~GTPa- 71 (280)
T 1l5x_A 1 MKILVTNDDGV-HSPGLRLLYQFALSLG-DVDVVAPESPKSATGLGI-TLHKPLRMYEVDLC---G--FRAIATSGTPS- 71 (280)
T ss_dssp CEEEEECSSCT-TCHHHHHHHHHHGGGS-EEEEEEESSCTTTSCSSC-CCSSCBCEEEEECS---S--SEEEEESSCHH-
T ss_pred CeEEEEcCCCC-CcHhHHHHHHHHHhCC-CEEEEecCCCCcCCcccc-cCCCCeEEEEeccC---C--CceEEECCcHH-
Confidence 67777644333 2233788999999888 999999988765443221 22233555555410 0 00111111121
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcC-----------Cc---ccHHHHHHHhCCCeEEEec
Q 011765 87 EVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDF-----------AA---YWLPARARELGIPSGFFSI 139 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~-----------~~---~~~~~~A~~lgIP~i~~~~ 139 (478)
+...-.+..+ ..+||+||+.. +. ..|.+-|..+|||.|.++.
T Consensus 72 ---------DCV~lal~~l--~~~PDLVvSGIN~G~Nlg~d~v~ySGTVgAA~Ea~~~GiPaIA~S~ 127 (280)
T 1l5x_A 72 ---------DTVYLATFGL--GRKYDIVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPALAYSA 127 (280)
T ss_dssp ---------HHHHHHHHHH--TSCCSEEEEEEEEBCCCSHHHHTTCHHHHHHHHHHHTTCCEEEEEE
T ss_pred ---------HHHHHHHhcC--CCCCCEEEECCccCCcCCccccccchhHHHHHHHHHcCCCeEEEEc
Confidence 1122234444 46899999752 11 1344556789999999965
No 66
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=87.24 E-value=3.7 Score=42.22 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=25.4
Q ss_pred hhhcCCCceeeee---ccCh-hhHHHHHHhCCcEeccccc
Q 011765 350 AILAHDSVGGFLT---HAGW-SSVVEALQFGMPLIVLTCY 385 (478)
Q Consensus 350 ~vL~~~~~~~~It---HgG~-~s~~eal~~GvP~l~~P~~ 385 (478)
++++.+++ ||. +=|+ .+.+||+++|+|+|+.-..
T Consensus 514 ~~~~~adv--fV~PS~~EgfGl~~LEAmA~G~PvI~s~~g 551 (725)
T 3nb0_A 514 EFVRGCHL--GVFPSYYEPWGYTPAECTVMGVPSITTNVS 551 (725)
T ss_dssp HHHHHCSE--EECCCSSBSSCHHHHHHHHTTCCEEEETTB
T ss_pred HHHhhceE--EEeccccCCCCHHHHHHHHcCCCEEEeCCC
Confidence 46777888 663 3344 5899999999999995543
No 67
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=86.71 E-value=6.4 Score=32.35 Aligned_cols=142 Identities=15% Similarity=0.109 Sum_probs=79.7
Q ss_pred CceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCC
Q 011765 277 GSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDS 356 (478)
Q Consensus 277 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~ 356 (478)
+|.|-|-+||.+ +....++....|+.++.++-..+. ..-..|+... .|+.+.+ -...+
T Consensus 11 ~~~V~IimGS~S--D~~v~~~a~~~L~~~Gi~~dv~V~--------SaHR~p~~l~-----------~~~~~a~-~~g~~ 68 (170)
T 1xmp_A 11 KSLVGVIMGSTS--DWETMKYACDILDELNIPYEKKVV--------SAHRTPDYMF-----------EYAETAR-ERGLK 68 (170)
T ss_dssp CCSEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEEC--------CTTTSHHHHH-----------HHHHHTT-TTTCC
T ss_pred CCcEEEEECcHH--HHHHHHHHHHHHHHcCCCEEEEEE--------eccCCHHHHH-----------HHHHHHH-hCCCc
Confidence 567888888877 778888889999999988544333 2334555322 1111111 01133
Q ss_pred ceeeeeccChhhHHHHHH---hCCcEecccccc--chhhH-HHHHhh--cCeEEE-eeccCCCCcccHHHHHHHHHHHhc
Q 011765 357 VGGFLTHAGWSSVVEALQ---FGMPLIVLTCYA--DQGLN-AKLLEE--KQIVEL-IPRDEGDGFFTRNSVAESLRLVLV 427 (478)
Q Consensus 357 ~~~~ItHgG~~s~~eal~---~GvP~l~~P~~~--DQ~~n-a~~v~~--~g~G~~-l~~~~~~~~~~~~~l~~~i~~ll~ 427 (478)
+ +|.=+|...-+-.+- .-+|+|.+|... .+... -.-+.+ .|+.+. +.+.+ -+-.++..++..|- -+.
T Consensus 69 V--iIa~AG~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~daLlSivqmP~GvpVatV~I~~-a~~~nAallAaqIl-a~~ 144 (170)
T 1xmp_A 69 V--IIAGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGK-AGSTNAGLLAAQIL-GSF 144 (170)
T ss_dssp E--EEEEEESSCCHHHHHHTTCCSCEEEEEECCTTTTTHHHHHHHHCCCTTCCCEECCSSH-HHHHHHHHHHHHHH-HTT
T ss_pred E--EEEECCchhhhHHHHHhccCCCEEEeeCCCCCCCcHHHHHHHhcCCCCCeeEEEecCC-cchHHHHHHHHHHH-ccC
Confidence 4 777666543333332 346999999853 22222 233555 366432 12210 00145666665554 344
Q ss_pred ccchHHHHHHHHHHHHHhcc
Q 011765 428 EEKGQIYRDKAKEMKGLFGD 447 (478)
Q Consensus 428 ~~~~~~~~~~a~~~~~~~~~ 447 (478)
|++++++++.+++...+
T Consensus 145 ---d~~l~~kl~~~r~~~~~ 161 (170)
T 1xmp_A 145 ---HDDIHDALELRREAIEK 161 (170)
T ss_dssp ---CHHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHHH
Confidence 68999999999887653
No 68
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=86.67 E-value=3.7 Score=40.63 Aligned_cols=107 Identities=15% Similarity=0.098 Sum_probs=70.7
Q ss_pred EE-EeccCChhh---hhcCCCceeeee---ccCh-hhHHHHHHhCC-----cEecccccc--chhhHHHHHhhcCeEEEe
Q 011765 340 VV-YTSWAPQLA---ILAHDSVGGFLT---HAGW-SSVVEALQFGM-----PLIVLTCYA--DQGLNAKLLEEKQIVELI 404 (478)
Q Consensus 340 ~~-~~~~vpq~~---vL~~~~~~~~It---HgG~-~s~~eal~~Gv-----P~l~~P~~~--DQ~~na~~v~~~g~G~~l 404 (478)
++ +..++++.+ ++..+++ ||. .=|+ .++.||+++|+ |+|+..+.+ ++. .-|..+
T Consensus 333 v~~~~g~v~~~el~~ly~~ADv--~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G~~~~l---------~~g~lv 401 (482)
T 1uqt_A 333 LYYLNQHFDRKLLMKIFRYSDV--GLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANEL---------TSALIV 401 (482)
T ss_dssp EEEECSCCCHHHHHHHHHHCSE--EEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBGGGGTC---------TTSEEE
T ss_pred EEEeCCCCCHHHHHHHHHHccE--EEECCCcccCCchHHHHHHhCCCCCCCCEEEECCCCCHHHh---------CCeEEE
Confidence 44 457788755 5566777 663 3466 48999999998 677655433 222 135666
Q ss_pred eccCCCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHhc
Q 011765 405 PRDEGDGFFTRNSVAESLRLVLVEEKGQIYRDKAKEMKGLFGDKGRHDRYVDNFLNYLKNH 465 (478)
Q Consensus 405 ~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (478)
+.. +.+.++++|.++|+.. .+.-+++.++..+...+ -.....++.+++.+++.
T Consensus 402 ~p~------d~~~lA~ai~~lL~~~-~~~r~~~~~~~~~~v~~-~s~~~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 402 NPY------DRDEVAAALDRALTMS-LAERISRHAEMLDVIVK-NDINHWQECFISDLKQI 454 (482)
T ss_dssp CTT------CHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHS
T ss_pred CCC------CHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhc
Confidence 653 7899999999999831 12344555555555544 45677888888888765
No 69
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=86.54 E-value=2.9 Score=34.40 Aligned_cols=142 Identities=12% Similarity=0.060 Sum_probs=78.9
Q ss_pred CCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCC
Q 011765 276 KGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHD 355 (478)
Q Consensus 276 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~ 355 (478)
+.|.|-|-+||.+ +....++..+.|++++.++-..+. ..-..|+.+. .|+-... -...
T Consensus 11 ~~P~V~IimGS~S--D~~v~~~a~~~l~~~gi~~ev~V~--------saHR~p~~l~-----------~~~~~a~-~~g~ 68 (173)
T 4grd_A 11 SAPLVGVLMGSSS--DWDVMKHAVAILQEFGVPYEAKVV--------SAHRMPDEMF-----------DYAEKAR-ERGL 68 (173)
T ss_dssp SSCSEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEEC--------CTTTSHHHHH-----------HHHHHHT-TTTC
T ss_pred CCCeEEEEeCcHh--HHHHHHHHHHHHHHcCCCEEEEEE--------ccccCHHHHH-----------HHHHHHH-hcCC
Confidence 3567888889877 778888889999999988544333 2344555322 1221111 1122
Q ss_pred CceeeeeccCh-h---hHHHHHHhCCcEecccccc---chhhHHHHHhhc--CeEEEeeccCCCCcccHHHHHHHHHHHh
Q 011765 356 SVGGFLTHAGW-S---SVVEALQFGMPLIVLTCYA---DQGLNAKLLEEK--QIVELIPRDEGDGFFTRNSVAESLRLVL 426 (478)
Q Consensus 356 ~~~~~ItHgG~-~---s~~eal~~GvP~l~~P~~~---DQ~~na~~v~~~--g~G~~l~~~~~~~~~~~~~l~~~i~~ll 426 (478)
++ +|.=+|. + ++..+ ..-+|+|++|... +..+--.-+.++ ||.+..-.-..++-.++.-++..|- -+
T Consensus 69 ~V--iIa~AG~aahLpgvvA~-~t~~PVIgVPv~~~~l~G~dsLlSivqMP~Gvpvatv~i~~~~a~NAallA~~IL-a~ 144 (173)
T 4grd_A 69 RA--IIAGAGGAAHLPGMLAA-KTTVPVLGVPVASKYLKGVDSLHSIVQMPKGVPVATFAIGEAGAANAALFAVSIL-SG 144 (173)
T ss_dssp SE--EEEEEESSCCHHHHHHH-HCCSCEEEEEECCTTTTTHHHHHHHHCCCTTSCCEECCSSHHHHHHHHHHHHHHH-TT
T ss_pred eE--EEEeccccccchhhhee-cCCCCEEEEEcCCCCCCchhHHHHHHhCCCCCCceEEecCCcchHHHHHHHHHHH-cC
Confidence 33 6665554 2 44443 4578999999743 334434445555 6654432111000134444444432 23
Q ss_pred cccchHHHHHHHHHHHHHhc
Q 011765 427 VEEKGQIYRDKAKEMKGLFG 446 (478)
Q Consensus 427 ~~~~~~~~~~~a~~~~~~~~ 446 (478)
. |++++++++.+++...
T Consensus 145 ~---d~~l~~kl~~~r~~~~ 161 (173)
T 4grd_A 145 N---SVDYANRLAAFRVRQN 161 (173)
T ss_dssp S---CHHHHHHHHHHHHHHH
T ss_pred C---CHHHHHHHHHHHHHHH
Confidence 4 7899999998888764
No 70
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A*
Probab=86.45 E-value=4.4 Score=35.96 Aligned_cols=114 Identities=14% Similarity=0.148 Sum_probs=62.3
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCC-CccccCCCCh
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRE-NAEATIDLPY 85 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~-~~~~~~~~~~ 85 (478)
||||+.-==+. |---+..|+++|++.| +|+++.+...+.-+...- .....+++..+.. + +. ........+.
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~~l~~~g-~V~VVAP~~~~Sg~g~si-Tl~~pl~~~~~~~----~-~~~~~~~v~GTPa 72 (247)
T 1j9j_A 1 MRILVTNDDGI-QSKGIIVLAELLSEEH-EVFVVAPDKERSATGHSI-TIHVPLWMKKVFI----S-ERVVAYSTTGTPA 72 (247)
T ss_dssp CEEEEECSSCT-TCHHHHHHHHHHTTTS-EEEEEEESSCCTTCTTCC-CCSSCCCEEECCC----S-SSEEEEEESSCHH
T ss_pred CeEEEEcCCCC-CcHhHHHHHHHHHhCC-CEEEEecCCCCcCCcccc-cCCCCeEEEEecc----C-CCCceEEECCcHH
Confidence 67777644333 2233788999999888 899999988765443221 1223344444431 0 00 0011111111
Q ss_pred hHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcC----------Ccc---cHHHHHHHhCCCeEEEec
Q 011765 86 DEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDF----------AAY---WLPARARELGIPSGFFSI 139 (478)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~----------~~~---~~~~~A~~lgIP~i~~~~ 139 (478)
+...-.+..++ ..+||+||+.. +.+ .|.+-|..+|||.|.++.
T Consensus 73 ----------DCV~lal~~l~-~~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~ 128 (247)
T 1j9j_A 73 ----------DCVKLAYNVVM-DKRVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMMNIPSIAISS 128 (247)
T ss_dssp ----------HHHHHHHHTTS-TTCCSEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEE
T ss_pred ----------HHHHHHHHhhc-cCCCCEEEECCccCCCCCcCeecchhHHHHHHHHhcCCCeEEEec
Confidence 11222333444 35899999753 212 344557789999999865
No 71
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=85.22 E-value=7.3 Score=31.71 Aligned_cols=136 Identities=15% Similarity=0.050 Sum_probs=77.4
Q ss_pred ceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCc
Q 011765 278 SVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSV 357 (478)
Q Consensus 278 ~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~ 357 (478)
|.|-|-+||.+ +....++....|+..+.++-..+. ..-..|+... .|+...+ ..-.+
T Consensus 3 ~~V~Iimgs~S--D~~v~~~a~~~l~~~gi~~ev~V~--------saHR~p~~~~-----------~~~~~a~--~~~~~ 59 (159)
T 3rg8_A 3 PLVIILMGSSS--DMGHAEKIASELKTFGIEYAIRIG--------SAHKTAEHVV-----------SMLKEYE--ALDRP 59 (159)
T ss_dssp CEEEEEESSGG--GHHHHHHHHHHHHHTTCEEEEEEC--------CTTTCHHHHH-----------HHHHHHH--TSCSC
T ss_pred CeEEEEECcHH--HHHHHHHHHHHHHHcCCCEEEEEE--------cccCCHHHHH-----------HHHHHhh--hcCCC
Confidence 45667788766 777788888889999987544333 2334555322 2222211 11123
Q ss_pred eeeeeccChh----hHHHHHHhCCcEeccccc---cchhhHHHHHhhc--CeEEEeeccCCCCcccHHHHHHHHHHHhcc
Q 011765 358 GGFLTHAGWS----SVVEALQFGMPLIVLTCY---ADQGLNAKLLEEK--QIVELIPRDEGDGFFTRNSVAESLRLVLVE 428 (478)
Q Consensus 358 ~~~ItHgG~~----s~~eal~~GvP~l~~P~~---~DQ~~na~~v~~~--g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~ 428 (478)
++||.=+|.. ++..++ .-+|+|.+|.. .+..+ -.-+.++ |+.+.--... .++..++..|-. +.
T Consensus 60 ~ViIa~AG~aa~LpgvvA~~-t~~PVIgVP~~~~~l~G~d-LlS~vqmp~GvpVatv~~~----~nAa~lA~~Il~-~~- 131 (159)
T 3rg8_A 60 KLYITIAGRSNALSGFVDGF-VKGATIACPPPSDSFAGAD-IYSSLRMPSGISPALVLEP----KNAALLAARIFS-LY- 131 (159)
T ss_dssp EEEEEECCSSCCHHHHHHHH-SSSCEEECCCCCCGGGGTH-HHHHHCCCTTCCCEECCSH----HHHHHHHHHHHT-TT-
T ss_pred cEEEEECCchhhhHHHHHhc-cCCCEEEeeCCCCCCCCcc-HHHHHhCCCCCceEEecCc----hHHHHHHHHHHh-CC-
Confidence 4488777753 344433 56899999963 23344 3334444 5544332111 466666554433 23
Q ss_pred cchHHHHHHHHHHHHHhc
Q 011765 429 EKGQIYRDKAKEMKGLFG 446 (478)
Q Consensus 429 ~~~~~~~~~a~~~~~~~~ 446 (478)
|+.++++++..++...
T Consensus 132 --d~~l~~kl~~~r~~~~ 147 (159)
T 3rg8_A 132 --DKEIADSVKSYMESNA 147 (159)
T ss_dssp --CHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHH
Confidence 6889999998888754
No 72
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=85.19 E-value=11 Score=30.88 Aligned_cols=141 Identities=12% Similarity=0.025 Sum_probs=76.4
Q ss_pred ceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCc
Q 011765 278 SVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSV 357 (478)
Q Consensus 278 ~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~ 357 (478)
|.|-|-+||.+ +....++..+.|+.++..+-..+. ..-..|+.+. +|+.. +....+
T Consensus 6 p~V~IimgS~S--D~~v~~~a~~~l~~~gi~~ev~V~--------SaHRtp~~l~-----------~~~~~---~~~~g~ 61 (166)
T 3oow_A 6 VQVGVIMGSKS--DWSTMKECCDILDNLGIGYECEVV--------SAHRTPDKMF-----------DYAET---AKERGL 61 (166)
T ss_dssp EEEEEEESSGG--GHHHHHHHHHHHHHTTCEEEEEEC--------CTTTCHHHHH-----------HHHHH---TTTTTC
T ss_pred CeEEEEECcHH--hHHHHHHHHHHHHHcCCCEEEEEE--------cCcCCHHHHH-----------HHHHH---HHhCCC
Confidence 45777788766 777888888899999986543332 2234555322 22211 111122
Q ss_pred eeeeeccChhhHHHHHH---hCCcEecccccc---chhhHHHHHhhc--CeEEEeeccCCCCcccHHHHHHHHHHHhccc
Q 011765 358 GGFLTHAGWSSVVEALQ---FGMPLIVLTCYA---DQGLNAKLLEEK--QIVELIPRDEGDGFFTRNSVAESLRLVLVEE 429 (478)
Q Consensus 358 ~~~ItHgG~~s~~eal~---~GvP~l~~P~~~---DQ~~na~~v~~~--g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~~ 429 (478)
++||.=+|...-+-.+- .-+|+|.+|... +..+--.-+.+. |+++..-.-++.|-.++..++..|-. +.
T Consensus 62 ~ViIa~AG~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~dsLlS~vqmp~gvpVatV~I~~ag~~nAa~lAa~Il~-~~-- 138 (166)
T 3oow_A 62 KVIIAGAGGAAHLPGMVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQMPAGIPVATFAIGMAGAKNAALFAASILQ-HT-- 138 (166)
T ss_dssp CEEEEEECSSCCHHHHHHHTCSSCEEEEECCCTTTTTHHHHHHHHTCCTTSCCEECCSTHHHHHHHHHHHHHHHG-GG--
T ss_pred cEEEEECCcchhhHHHHHhccCCCEEEeecCcCCCCCHHHHHHHhcCCCCCceEEEecCCccchHHHHHHHHHHc-CC--
Confidence 33887777633222222 346999999743 223333335555 55444321110000355555544433 23
Q ss_pred chHHHHHHHHHHHHHhc
Q 011765 430 KGQIYRDKAKEMKGLFG 446 (478)
Q Consensus 430 ~~~~~~~~a~~~~~~~~ 446 (478)
|+.++++++.+++...
T Consensus 139 -d~~l~~kl~~~r~~~~ 154 (166)
T 3oow_A 139 -DINIAKALAEFRAEQT 154 (166)
T ss_dssp -CHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHH
Confidence 6889999999888764
No 73
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=84.62 E-value=7.5 Score=33.10 Aligned_cols=97 Identities=10% Similarity=0.070 Sum_probs=60.9
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCcc------ccCCCCCCCCCCCeEEEEecCCCCCCCCCCccc
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNI------DRLPRLPQNLASMIQFVKISLPHVDNLRENAEA 79 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~------~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~ 79 (478)
+-.|++++..+.|-..-.+.+|-+.+.+|++|.|+..-... +.+...+ +++.... .++. .
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~------v~~~~~g----~gf~----~ 93 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHG------VEFQVMA----TGFT----W 93 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGT------CEEEECC----TTCC----C
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCC------cEEEEcc----cccc----c
Confidence 45788888889999999999999999999999999765531 1222222 6776664 2211 0
Q ss_pred cCCCChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCc
Q 011765 80 TIDLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAA 120 (478)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~ 120 (478)
. . .....-............+.+.+.++|+||.|-+.
T Consensus 94 --~-~-~~~~~~~~~a~~~l~~a~~~l~~~~yDlvILDEi~ 130 (196)
T 1g5t_A 94 --E-T-QNREADTAACMAVWQHGKRMLADPLLDMVVLDELT 130 (196)
T ss_dssp --C-G-GGHHHHHHHHHHHHHHHHHHTTCTTCSEEEEETHH
T ss_pred --C-C-CCcHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 0 0 01111122223333455566667789999999654
No 74
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A
Probab=84.08 E-value=11 Score=33.26 Aligned_cols=115 Identities=16% Similarity=0.115 Sum_probs=62.9
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCC-CCCCCCccccCCCCh
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHV-DNLRENAEATIDLPY 85 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~-~~l~~~~~~~~~~~~ 85 (478)
||||+.-==+. |---+..|+++|++.| +|+++.+...+.-+...- .+...+++..++.... ++. ........+.
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~~l~~~g-~V~VVAP~~~~Sg~g~si-Tl~~pl~~~~~~~~~~~~~~--~~~~v~GTPa 75 (244)
T 2e6c_A 1 MRILVTNDDGI-YSPGLWALAEAASQFG-EVFVAAPDTEQSAAGHAI-TIAHPVRAYPHPSPLHAPHF--PAYRVRGTPA 75 (244)
T ss_dssp CEEEEECSSCT-TCHHHHHHHHHHTTTS-EEEEEEECSSCCCCCSSC-CCSSCBEEEECCCCTTSCCC--CEEEEESCHH
T ss_pred CeEEEEcCCCC-CcHhHHHHHHHHHhCC-CEEEEecCCCCcCCcccc-cCCCCeEEEEeccCcCCCCC--ceEEEcCcHH
Confidence 67777644333 2233788999999888 899999988765443221 2334466666642100 000 0111111121
Q ss_pred hHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcC----------Ccc---cHHHHHHHhCCCeEEEec
Q 011765 86 DEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDF----------AAY---WLPARARELGIPSGFFSI 139 (478)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~----------~~~---~~~~~A~~lgIP~i~~~~ 139 (478)
+...-.+. + ..+||+||+.. +.+ .|.+-|..+|||.|.++.
T Consensus 76 ----------DCV~lal~--l-~~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~ 129 (244)
T 2e6c_A 76 ----------DCVALGLH--L-FGPVDLVLSGVNLGSNLGHEIWHSGTVAAAKQGYLFGLSAAAFSV 129 (244)
T ss_dssp ----------HHHHHHHH--H-SCSCCEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCEEEEEEE
T ss_pred ----------HHHHHHHc--C-CCCCCEEEECCccCCCCCcCeechHhHHHHHHHHhcCCCeEEEec
Confidence 11111222 2 46899999753 212 344557789999999854
No 75
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=83.82 E-value=7.5 Score=32.35 Aligned_cols=139 Identities=17% Similarity=0.118 Sum_probs=81.5
Q ss_pred CceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCC
Q 011765 277 GSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDS 356 (478)
Q Consensus 277 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~ 356 (478)
-|.|-|-+||.+ +....++....|+.++.++=..+. ..-..|+... .|+.+.+ -...+
T Consensus 13 ~~~V~IimGS~S--D~~v~~~a~~~L~~~Gi~~dv~V~--------SaHR~p~~l~-----------~~~~~a~-~~g~~ 70 (183)
T 1o4v_A 13 VPRVGIIMGSDS--DLPVMKQAAEILEEFGIDYEITIV--------SAHRTPDRMF-----------EYAKNAE-ERGIE 70 (183)
T ss_dssp -CEEEEEESCGG--GHHHHHHHHHHHHHTTCEEEEEEC--------CTTTCHHHHH-----------HHHHHTT-TTTCC
T ss_pred CCeEEEEeccHH--HHHHHHHHHHHHHHcCCCeEEEEE--------cccCCHHHHH-----------HHHHHHH-hCCCc
Confidence 357888888877 778888889999999988544333 2334555322 1211111 01233
Q ss_pred ceeeeeccChh----hHHHHHHhCCcEecccccc--chhhHH-HHHhhc--CeEEEe-eccCCCCcccHHHHHHHHHHHh
Q 011765 357 VGGFLTHAGWS----SVVEALQFGMPLIVLTCYA--DQGLNA-KLLEEK--QIVELI-PRDEGDGFFTRNSVAESLRLVL 426 (478)
Q Consensus 357 ~~~~ItHgG~~----s~~eal~~GvP~l~~P~~~--DQ~~na-~~v~~~--g~G~~l-~~~~~~~~~~~~~l~~~i~~ll 426 (478)
+ +|.=+|.. ++..++ .-+|+|.+|... -....+ .-+.+. |+.+.. .+.. -.++..++..|- -+
T Consensus 71 V--iIa~AG~aa~LpgvvA~~-t~~PVIgVP~~~~~l~G~dsLlSivqmP~GvpVatV~Id~---~~nAa~lAaqIl-a~ 143 (183)
T 1o4v_A 71 V--IIAGAGGAAHLPGMVASI-THLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAINN---AKNAGILAASIL-GI 143 (183)
T ss_dssp E--EEEEEESSCCHHHHHHHH-CSSCEEEEEECCTTTTTHHHHHHHHTCCTTCCCEECCTTC---HHHHHHHHHHHH-HT
T ss_pred E--EEEecCcccccHHHHHhc-cCCCEEEeeCCCCCCCcHHHHHHHhcCCCCCeeEEEecCC---chHHHHHHHHHH-hc
Confidence 4 77766643 444444 678999999854 222233 335666 644322 2211 156677776664 34
Q ss_pred cccchHHHHHHHHHHHHHhcc
Q 011765 427 VEEKGQIYRDKAKEMKGLFGD 447 (478)
Q Consensus 427 ~~~~~~~~~~~a~~~~~~~~~ 447 (478)
. |++++++++..++...+
T Consensus 144 ~---d~~l~~kL~~~r~~~~~ 161 (183)
T 1o4v_A 144 K---YPEIARKVKEYKERMKR 161 (183)
T ss_dssp T---CHHHHHHHHHHHHHHHH
T ss_pred C---CHHHHHHHHHHHHHHHH
Confidence 4 68899999998888653
No 76
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=83.56 E-value=3.3 Score=38.40 Aligned_cols=38 Identities=11% Similarity=0.269 Sum_probs=28.6
Q ss_pred CCCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 011765 3 DNSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRN 45 (478)
Q Consensus 3 ~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~ 45 (478)
+|++|||+|+..+..+ ....++|.++||+|..+.+.+.
T Consensus 1 ~~~mmrIvf~Gtp~fa-----~~~L~~L~~~~~~v~~Vvt~pd 38 (317)
T 3rfo_A 1 SNAMIKVVFMGTPDFS-----VPVLRRLIEDGYDVIGVVTQPD 38 (317)
T ss_dssp CCTTSEEEEECCSTTH-----HHHHHHHHHTTCEEEEEECCCC
T ss_pred CCCceEEEEEeCCHHH-----HHHHHHHHHCCCcEEEEEeCCC
Confidence 4678999999887554 3446778888999997776543
No 77
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=83.39 E-value=6.2 Score=32.22 Aligned_cols=139 Identities=14% Similarity=0.092 Sum_probs=76.6
Q ss_pred ceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCc
Q 011765 278 SVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSV 357 (478)
Q Consensus 278 ~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~ 357 (478)
+.|-|-+||.+ +....++....|+.++.++=..+. .....|+... .|+.... -...++
T Consensus 4 ~~V~Iimgs~S--D~~v~~~a~~~l~~~gi~~ev~V~--------SaHR~p~~~~-----------~~~~~a~-~~g~~V 61 (163)
T 3ors_A 4 MKVAVIMGSSS--DWKIMQESCNMLDYFEIPYEKQVV--------SAHRTPKMMV-----------QFASEAR-ERGINI 61 (163)
T ss_dssp CCEEEEESCGG--GHHHHHHHHHHHHHTTCCEEEEEC--------CTTTSHHHHH-----------HHHHHTT-TTTCCE
T ss_pred CeEEEEECcHH--HHHHHHHHHHHHHHcCCCEEEEEE--------CCcCCHHHHH-----------HHHHHHH-hCCCcE
Confidence 45667788766 777888888899999988544333 2334555322 1111100 012334
Q ss_pred eeeeeccChh----hHHHHHHhCCcEeccccccc---hhhHHHHHhhc--CeEEEe-eccCCCCcccHHHHHHHHHHHhc
Q 011765 358 GGFLTHAGWS----SVVEALQFGMPLIVLTCYAD---QGLNAKLLEEK--QIVELI-PRDEGDGFFTRNSVAESLRLVLV 427 (478)
Q Consensus 358 ~~~ItHgG~~----s~~eal~~GvP~l~~P~~~D---Q~~na~~v~~~--g~G~~l-~~~~~~~~~~~~~l~~~i~~ll~ 427 (478)
||.=+|.. ++..++ .-+|+|.+|.... ..+--.-+.++ |+.+.. ...+ .+-.++..++..|-.+ .
T Consensus 62 --iIa~AG~aa~LpgvvA~~-t~~PVIgVP~~~~~l~G~dsLlS~vqmp~GvPVatV~I~~-a~~~nAa~lAa~Il~~-~ 136 (163)
T 3ors_A 62 --IIAGAGGAAHLPGMVASL-TTLPVIGVPIETKSLKGIDSLLSIVQMPGGIPVATTAIGA-AGAKNAGILAARMLSI-Q 136 (163)
T ss_dssp --EEEEEESSCCHHHHHHHH-CSSCEEEEEECCTTTTTHHHHHHHHTCCTTSCCEECCSTH-HHHHHHHHHHHHHHHT-T
T ss_pred --EEEECCchhhhHHHHHhc-cCCCEEEeeCCCCCCCCHHHHHHHhhCCCCCceEEEEcCC-cccHHHHHHHHHHHhC-C
Confidence 77766653 444443 5689999997532 23323334445 552222 1210 0014555565555333 3
Q ss_pred ccchHHHHHHHHHHHHHhc
Q 011765 428 EEKGQIYRDKAKEMKGLFG 446 (478)
Q Consensus 428 ~~~~~~~~~~a~~~~~~~~ 446 (478)
|+.++++++.+++...
T Consensus 137 ---d~~l~~kl~~~r~~~~ 152 (163)
T 3ors_A 137 ---NPSLVEKLNQYESSLI 152 (163)
T ss_dssp ---CTHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHH
Confidence 5889999999888764
No 78
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=82.29 E-value=10 Score=31.26 Aligned_cols=140 Identities=13% Similarity=0.062 Sum_probs=75.3
Q ss_pred ceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCc
Q 011765 278 SVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSV 357 (478)
Q Consensus 278 ~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~ 357 (478)
+.|-|-+||.+ +....++....|+.++.++-..+. ..-..|+... .|+.... -...++
T Consensus 13 ~~V~IimGS~S--D~~v~~~a~~~L~~~Gi~~ev~V~--------SaHR~p~~~~-----------~~~~~a~-~~g~~V 70 (174)
T 3kuu_A 13 VKIAIVMGSKS--DWATMQFAADVLTTLNVPFHVEVV--------SAHRTPDRLF-----------SFAEQAE-ANGLHV 70 (174)
T ss_dssp CCEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEEC--------CTTTCHHHHH-----------HHHHHTT-TTTCSE
T ss_pred CcEEEEECcHH--HHHHHHHHHHHHHHcCCCEEEEEE--------cccCCHHHHH-----------HHHHHHH-hCCCcE
Confidence 45667788766 777888888899999988644433 2334555322 1111110 112344
Q ss_pred eeeeeccChhhHHHHHH---hCCcEecccccc---chhhHHHHHhhc--CeEEEe-eccCCCCcccHHHHHHHHHHHhcc
Q 011765 358 GGFLTHAGWSSVVEALQ---FGMPLIVLTCYA---DQGLNAKLLEEK--QIVELI-PRDEGDGFFTRNSVAESLRLVLVE 428 (478)
Q Consensus 358 ~~~ItHgG~~s~~eal~---~GvP~l~~P~~~---DQ~~na~~v~~~--g~G~~l-~~~~~~~~~~~~~l~~~i~~ll~~ 428 (478)
||.=+|...-+-.+- .-+|+|.+|... +-.+--.-+.++ |+.+.. ...+ .+-.++..++..|-. +.
T Consensus 71 --iIa~AG~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~dsLlS~vqmP~GvPVatV~I~~-a~~~nAa~lAa~ILa-~~- 145 (174)
T 3kuu_A 71 --IIAGNGGAAHLPGMLAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGK-AGAANAALLAAQILA-LH- 145 (174)
T ss_dssp --EEEEEESSCCHHHHHHHTCSSCEEEEEECCTTTTTHHHHHHHHTCCTTSCCEECCSSH-HHHHHHHHHHHHHHH-TT-
T ss_pred --EEEECChhhhhHHHHHhccCCCEEEeeCCCCCCCCHHHHHHhhhCCCCCeeEEEEeCC-ccchHHHHHHHHHHc-CC-
Confidence 777766532222222 346999999743 222323334444 542222 1110 001345555555433 33
Q ss_pred cchHHHHHHHHHHHHHhc
Q 011765 429 EKGQIYRDKAKEMKGLFG 446 (478)
Q Consensus 429 ~~~~~~~~~a~~~~~~~~ 446 (478)
|++++++++.+++...
T Consensus 146 --d~~l~~kl~~~r~~~~ 161 (174)
T 3kuu_A 146 --DTELAGRLAHWRQSQT 161 (174)
T ss_dssp --CHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHH
Confidence 6889999999888764
No 79
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=82.05 E-value=6.7 Score=32.38 Aligned_cols=139 Identities=16% Similarity=0.083 Sum_probs=78.9
Q ss_pred CceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCC
Q 011765 277 GSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDS 356 (478)
Q Consensus 277 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~ 356 (478)
++.|-|-+||.+ +....++....|+..+.++=..+. .....|+... .|+-... -...+
T Consensus 7 ~~~V~IimgS~S--D~~v~~~a~~~L~~~gi~~ev~V~--------SaHR~p~~~~-----------~~~~~a~-~~g~~ 64 (174)
T 3lp6_A 7 RPRVGVIMGSDS--DWPVMADAAAALAEFDIPAEVRVV--------SAHRTPEAMF-----------SYARGAA-ARGLE 64 (174)
T ss_dssp CCSEEEEESCGG--GHHHHHHHHHHHHHTTCCEEEEEC--------CTTTCHHHHH-----------HHHHHHH-HHTCC
T ss_pred CCeEEEEECcHH--hHHHHHHHHHHHHHcCCCEEEEEE--------CCCCCHHHHH-----------HHHHHHH-hCCCC
Confidence 445777788766 777888888899999988644333 2334555322 2221111 12234
Q ss_pred ceeeeeccChh----hHHHHHHhCCcEecccccc---chhhHHHHHhhc--CeEEEe-eccCCCCcccHHHHHHHHHHHh
Q 011765 357 VGGFLTHAGWS----SVVEALQFGMPLIVLTCYA---DQGLNAKLLEEK--QIVELI-PRDEGDGFFTRNSVAESLRLVL 426 (478)
Q Consensus 357 ~~~~ItHgG~~----s~~eal~~GvP~l~~P~~~---DQ~~na~~v~~~--g~G~~l-~~~~~~~~~~~~~l~~~i~~ll 426 (478)
+ ||.=+|.. ++..++ .-+|+|.+|... +..+--.-+.+. |+.+.. .+.. -.++..++..|-.+
T Consensus 65 V--iIa~AG~aa~LpgvvA~~-t~~PVIgVP~~~~~l~G~daLlS~vqmp~GvpVatV~I~~---~~nAa~lAa~Il~~- 137 (174)
T 3lp6_A 65 V--IIAGAGGAAHLPGMVAAA-TPLPVIGVPVPLGRLDGLDSLLSIVQMPAGVPVATVSIGG---AGNAGLLAVRMLGA- 137 (174)
T ss_dssp E--EEEEEESSCCHHHHHHHH-CSSCEEEEEECCSSGGGHHHHHHHHCCCTTCCCEECCTTC---HHHHHHHHHHHHHT-
T ss_pred E--EEEecCchhhhHHHHHhc-cCCCEEEeeCCCCCCCCHHHHHHHhhCCCCCeeEEEEcCc---chHHHHHHHHHHhC-
Confidence 4 78776653 444443 568999999752 222223334444 543322 2111 14666666555433
Q ss_pred cccchHHHHHHHHHHHHHhcc
Q 011765 427 VEEKGQIYRDKAKEMKGLFGD 447 (478)
Q Consensus 427 ~~~~~~~~~~~a~~~~~~~~~ 447 (478)
. |+.++++++.+++...+
T Consensus 138 ~---d~~l~~kl~~~r~~~~~ 155 (174)
T 3lp6_A 138 A---NPQLRARIVAFQDRLAD 155 (174)
T ss_dssp T---CHHHHHHHHHHHHHHHH
T ss_pred C---CHHHHHHHHHHHHHHHH
Confidence 3 68899999999888753
No 80
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=81.66 E-value=3.1 Score=38.52 Aligned_cols=36 Identities=17% Similarity=0.144 Sum_probs=25.7
Q ss_pred CCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
|++|||+|+..+.. .....++|.+.||+|..+.+..
T Consensus 1 s~~mrIvf~Gt~~f-----a~~~L~~L~~~~~~i~~Vvt~p 36 (314)
T 1fmt_A 1 SESLRIIFAGTPDF-----AARHLDALLSSGHNVVGVFTQP 36 (314)
T ss_dssp CCCCEEEEEECSHH-----HHHHHHHHHHTTCEEEEEECCC
T ss_pred CCCCEEEEEecCHH-----HHHHHHHHHHCCCcEEEEEeCC
Confidence 46899999987643 2445577777899998666643
No 81
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A
Probab=81.54 E-value=5.5 Score=35.44 Aligned_cols=112 Identities=19% Similarity=0.200 Sum_probs=61.1
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccC-CCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATI-DLP 84 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~-~~~ 84 (478)
.||||+.-==+. |---+..|+++|++.| +|+++.+...+.-+...- .+...+.+..+. . ...... ..+
T Consensus 1 ~M~ILlTNDDGi-~apGi~aL~~~L~~~g-~V~VVAP~~~~Sg~g~ai-Tl~~Pl~~~~~~----~----~~~~v~~GTP 69 (254)
T 2v4n_A 1 SMRILLSNDDGV-HAPGIQTLAKALREFA-DVQVVAPDRNRSGASNSL-TLESSLRTFTFD----N----GDIAVQMGTP 69 (254)
T ss_dssp CCEEEEECSSCT-TCHHHHHHHHHHTTTS-EEEEEEESSCCTTCTTCC-CCSSCCEEEECT----T----SCEEEETCCH
T ss_pred CCeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEeeCCCCcCccCCc-CCCCCeEEEEeC----C----CCeEECCCCH
Confidence 478887754444 3344778899998876 999999988765443321 112224443331 0 001111 111
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcC----------Ccc---cHHHHHHHhCCCeEEEec
Q 011765 85 YDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDF----------AAY---WLPARARELGIPSGFFSI 139 (478)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~----------~~~---~~~~~A~~lgIP~i~~~~ 139 (478)
. +...-.+..++ ..+||+||+.. +.+ .|++-|..+|||.|.++.
T Consensus 70 a----------DCV~lal~~ll-~~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~ 126 (254)
T 2v4n_A 70 T----------DCVYLGVNALM-RPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSL 126 (254)
T ss_dssp H----------HHHHHHHHTTS-SSCCSEEEEEEEESCCCGGGGGGCHHHHHHHTTTTSSSCEEEEEE
T ss_pred H----------HHHHHHHhhcc-CCCCCEeeeCCcCCCCCCCCeeccHHHHHHHHHHhcCCCeEEEec
Confidence 1 11222333444 45899999753 222 233334668999999865
No 82
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=81.17 E-value=2 Score=37.08 Aligned_cols=45 Identities=11% Similarity=0.122 Sum_probs=38.7
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRL 52 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~ 52 (478)
++||++.-.++.+-+. ...|.+.|+++| +|.++.++...+++...
T Consensus 19 ~k~IllgvTGsiaa~k-~~~ll~~L~~~g-~V~vv~T~~A~~fv~~~ 63 (209)
T 1mvl_A 19 KPRVLLAASGSVAAIK-FGNLCHCFTEWA-EVRAVVTKSSLHFLDKL 63 (209)
T ss_dssp CCEEEEEECSSGGGGG-HHHHHHHHHTTS-EEEEEECTGGGGTCCGG
T ss_pred CCEEEEEEeCcHHHHH-HHHHHHHHhcCC-CEEEEEcchHHHhcCHH
Confidence 5789998888887666 899999999999 99999999888777654
No 83
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=79.66 E-value=11 Score=33.01 Aligned_cols=104 Identities=9% Similarity=0.034 Sum_probs=58.9
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCc-c---ccCCCCCCCCCCCeEEEEecCCCCCCCCCCcc
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQK--GHKIFFISTPRN-I---DRLPRLPQNLASMIQFVKISLPHVDNLRENAE 78 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~r--Gh~Vt~~~~~~~-~---~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~ 78 (478)
++|||+|+..+. |+ -+..+.++|.+. +++|..+.+... . +..++.| +.+..++- ..+..
T Consensus 21 ~~~rI~~l~SG~-g~--~~~~~l~~l~~~~~~~~I~~Vvt~~~~~~~~~~A~~~g------Ip~~~~~~---~~~~~--- 85 (229)
T 3auf_A 21 HMIRIGVLISGS-GT--NLQAILDGCREGRIPGRVAVVISDRADAYGLERARRAG------VDALHMDP---AAYPS--- 85 (229)
T ss_dssp TCEEEEEEESSC-CH--HHHHHHHHHHTTSSSEEEEEEEESSTTCHHHHHHHHTT------CEEEECCG---GGSSS---
T ss_pred CCcEEEEEEeCC-cH--HHHHHHHHHHhCCCCCeEEEEEcCCCchHHHHHHHHcC------CCEEEECc---ccccc---
Confidence 468999886555 32 367788888876 688876554421 1 2233333 66554420 01000
Q ss_pred ccCCCChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcc-cHHHHHHHhCCCeEEEec
Q 011765 79 ATIDLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAY-WLPARARELGIPSGFFSI 139 (478)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~-~~~~~A~~lgIP~i~~~~ 139 (478)
. ....+.+.+.+++.+||+||.=.+.. ....+-......++-+++
T Consensus 86 -------------r---~~~~~~~~~~l~~~~~Dliv~agy~~IL~~~~l~~~~~~~iNiHp 131 (229)
T 3auf_A 86 -------------R---TAFDAALAERLQAYGVDLVCLAGYMRLVRGPMLTAFPNRILNIHP 131 (229)
T ss_dssp -------------H---HHHHHHHHHHHHHTTCSEEEESSCCSCCCHHHHHHSTTCEEEEES
T ss_pred -------------h---hhccHHHHHHHHhcCCCEEEEcChhHhCCHHHHhhccCCEEEEcc
Confidence 0 12334566778888999999876532 333444555556666644
No 84
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=79.60 E-value=13 Score=30.52 Aligned_cols=142 Identities=12% Similarity=0.046 Sum_probs=77.4
Q ss_pred CceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCC
Q 011765 277 GSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDS 356 (478)
Q Consensus 277 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~ 356 (478)
+|.|-|-+||.+ +....++....|+.++.++-..+. ..-..|+... .|+-... -...+
T Consensus 6 ~~~V~IimgS~S--D~~v~~~a~~~l~~~gi~~ev~V~--------SaHR~p~~~~-----------~~~~~a~-~~g~~ 63 (169)
T 3trh_A 6 KIFVAILMGSDS--DLSTMETAFTELKSLGIPFEAHIL--------SAHRTPKETV-----------EFVENAD-NRGCA 63 (169)
T ss_dssp CCEEEEEESCGG--GHHHHHHHHHHHHHTTCCEEEEEC--------CTTTSHHHHH-----------HHHHHHH-HTTEE
T ss_pred CCcEEEEECcHH--hHHHHHHHHHHHHHcCCCEEEEEE--------cccCCHHHHH-----------HHHHHHH-hCCCc
Confidence 456777788876 777888888999999988644433 2234554322 1221111 11223
Q ss_pred ceeeeeccChhhHHHHHH---hCCcEecccccc---chhhHHHHHhhc--CeEEEe-eccCCCCcccHHHHHHHHHHHhc
Q 011765 357 VGGFLTHAGWSSVVEALQ---FGMPLIVLTCYA---DQGLNAKLLEEK--QIVELI-PRDEGDGFFTRNSVAESLRLVLV 427 (478)
Q Consensus 357 ~~~~ItHgG~~s~~eal~---~GvP~l~~P~~~---DQ~~na~~v~~~--g~G~~l-~~~~~~~~~~~~~l~~~i~~ll~ 427 (478)
+ ||.=+|...-+-.+- .-+|+|.+|... +-.+--.-+.++ |+.+.. ...+ .+-.++..++..|-. +.
T Consensus 64 V--iIa~AG~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~dsLlS~vqmp~GvPVatV~I~~-a~~~nAa~lAa~Il~-~~ 139 (169)
T 3trh_A 64 V--FIAAAGLAAHLAGTIAAHTLKPVIGVPMAGGSLGGLDALLSTVQMPGGVPVACTAIGK-AGAKNAAILAAQIIA-LQ 139 (169)
T ss_dssp E--EEEEECSSCCHHHHHHHTCSSCEEEEECCCSTTTTHHHHHHHHCCCTTSCCEECCSTH-HHHHHHHHHHHHHHH-TT
T ss_pred E--EEEECChhhhhHHHHHhcCCCCEEEeecCCCCCCCHHHHHHhhcCCCCCceEEEecCC-ccchHHHHHHHHHHc-CC
Confidence 4 887777633222222 346999999753 222323334443 553221 1110 001355555544433 34
Q ss_pred ccchHHHHHHHHHHHHHhcc
Q 011765 428 EEKGQIYRDKAKEMKGLFGD 447 (478)
Q Consensus 428 ~~~~~~~~~~a~~~~~~~~~ 447 (478)
|+.++++++..++...+
T Consensus 140 ---d~~l~~kl~~~r~~~~~ 156 (169)
T 3trh_A 140 ---DKSIAQKLVQQRTAKRE 156 (169)
T ss_dssp ---CHHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHHH
Confidence 68899999999888753
No 85
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=79.39 E-value=10 Score=31.47 Aligned_cols=140 Identities=15% Similarity=0.127 Sum_probs=78.7
Q ss_pred CceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCC
Q 011765 277 GSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDS 356 (478)
Q Consensus 277 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~ 356 (478)
.+.|-|-+||.+ +....++....|+.++.++-..+. .....|+... .|+.+.+ -...+
T Consensus 21 ~~~V~IimGS~S--D~~v~~~a~~~L~~~Gi~~dv~V~--------SaHR~p~~l~-----------~~~~~a~-~~g~~ 78 (182)
T 1u11_A 21 APVVGIIMGSQS--DWETMRHADALLTELEIPHETLIV--------SAHRTPDRLA-----------DYARTAA-ERGLN 78 (182)
T ss_dssp CCSEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEEC--------CTTTCHHHHH-----------HHHHHTT-TTTCC
T ss_pred CCEEEEEECcHH--HHHHHHHHHHHHHHcCCCeEEEEE--------cccCCHHHHH-----------HHHHHHH-hCCCc
Confidence 446777788776 778888888999999988544333 2334555321 1111111 01133
Q ss_pred ceeeeeccChh----hHHHHHHhCCcEecccccc--ch-hhHHHHHhh--cCeEEE-eeccCCCCcccHHHHHHHHHHHh
Q 011765 357 VGGFLTHAGWS----SVVEALQFGMPLIVLTCYA--DQ-GLNAKLLEE--KQIVEL-IPRDEGDGFFTRNSVAESLRLVL 426 (478)
Q Consensus 357 ~~~~ItHgG~~----s~~eal~~GvP~l~~P~~~--DQ-~~na~~v~~--~g~G~~-l~~~~~~~~~~~~~l~~~i~~ll 426 (478)
+ ||.=+|.. ++.-++ .-+|+|.+|... .. .+--.-+.+ .|+.+. +.+.+ -+-.++..++..|- -+
T Consensus 79 V--iIa~AG~aa~LpgvvA~~-t~~PVIgVP~~~~~l~G~dsLlSivqmP~GvpVatV~I~~-a~~~nAallAaqIl-a~ 153 (182)
T 1u11_A 79 V--IIAGAGGAAHLPGMCAAW-TRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGA-SGAKNAALLAASIL-AL 153 (182)
T ss_dssp E--EEEEEESSCCHHHHHHHH-CSSCEEEEEECCTTTTTHHHHHHHHCCCTTSCCEECCSSH-HHHHHHHHHHHHHH-GG
T ss_pred E--EEEecCchhhhHHHHHhc-cCCCEEEeeCCCCCCCcHHHHHHHhcCCCCCceEEEecCC-ccchHHHHHHHHHH-cc
Confidence 4 77766643 444443 468999999853 22 222233555 466632 22210 00145566665553 33
Q ss_pred cccchHHHHHHHHHHHHHhc
Q 011765 427 VEEKGQIYRDKAKEMKGLFG 446 (478)
Q Consensus 427 ~~~~~~~~~~~a~~~~~~~~ 446 (478)
. |+.++++++.+++...
T Consensus 154 ~---d~~l~~kL~~~r~~~~ 170 (182)
T 1u11_A 154 Y---NPALAARLETWRALQT 170 (182)
T ss_dssp G---CHHHHHHHHHHHHHHH
T ss_pred C---CHHHHHHHHHHHHHHH
Confidence 4 6889999999888765
No 86
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=77.44 E-value=4.4 Score=37.77 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=23.4
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFIST 42 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~ 42 (478)
+|||+|+. --+....+.++|.++||+|..+.+
T Consensus 22 ~mrIvf~G-----~~~fa~~~L~~L~~~~~~i~~Vvt 53 (329)
T 2bw0_A 22 SMKIAVIG-----QSLFGQEVYCHLRKEGHEVVGVFT 53 (329)
T ss_dssp CCEEEEEC-----CHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCEEEEEc-----CcHHHHHHHHHHHHCCCeEEEEEe
Confidence 59999993 223344577899999999986665
No 87
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=76.94 E-value=3.4 Score=38.64 Aligned_cols=42 Identities=17% Similarity=0.121 Sum_probs=34.7
Q ss_pred CccEEEEe-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCcc
Q 011765 5 SKLQIAMF-PWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNI 46 (478)
Q Consensus 5 ~~~~il~~-~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (478)
++++|+|+ .-++.|-..-..+||..|+++|++|.++..+...
T Consensus 14 ~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~~ 56 (334)
T 3iqw_A 14 RSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAH 56 (334)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSSC
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 45677766 4567799999999999999999999999988543
No 88
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=75.61 E-value=4.1 Score=34.93 Aligned_cols=46 Identities=9% Similarity=-0.082 Sum_probs=38.0
Q ss_pred ccEEEEecCCCccCHH-HHHHHHHHHHhCCCeEEEEeCCCccccCCCC
Q 011765 6 KLQIAMFPWLAFGHMI-PWLELAKLIAQKGHKIFFISTPRNIDRLPRL 52 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~-p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~ 52 (478)
++||++.-.++ +..+ -...+.+.|+++|++|.++.++...+++...
T Consensus 7 ~k~I~lgiTGs-~aa~~k~~~ll~~L~~~g~eV~vv~T~~A~~~i~~~ 53 (201)
T 3lqk_A 7 GKHVGFGLTGS-HCTYHEVLPQMERLVELGAKVTPFVTHTVQTTDTKF 53 (201)
T ss_dssp TCEEEEECCSC-GGGGGGTHHHHHHHHHTTCEEEEECSSCSCCTTCCT
T ss_pred CCEEEEEEECh-HHHHHHHHHHHHHHhhCCCEEEEEEChhHHHHHHHh
Confidence 56888877777 5555 7899999999999999999999887776544
No 89
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=74.37 E-value=33 Score=27.76 Aligned_cols=135 Identities=17% Similarity=0.121 Sum_probs=74.0
Q ss_pred EEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCCcee
Q 011765 280 VYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDSVGG 359 (478)
Q Consensus 280 v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~~~~ 359 (478)
|-|-+||.+ +....++....|+..+.++-.-+. ..-..|+... .|+.+. ..++
T Consensus 2 V~Iimgs~S--D~~v~~~a~~~l~~~gi~~dv~V~--------saHR~p~~~~-----------~~~~~a----~~~V-- 54 (157)
T 2ywx_A 2 ICIIMGSES--DLKIAEKAVNILKEFGVEFEVRVA--------SAHRTPELVE-----------EIVKNS----KADV-- 54 (157)
T ss_dssp EEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEEC--------CTTTCHHHHH-----------HHHHHC----CCSE--
T ss_pred EEEEEccHH--HHHHHHHHHHHHHHcCCCeEEEEE--------cccCCHHHHH-----------HHHHhc----CCCE--
Confidence 445567665 777788888889999988543332 2334554322 111110 1144
Q ss_pred eeeccChhhHHHHHH---hCCcEeccccccc-hhhH-HHHHhhc--CeEEEe-eccCCCCcccHHHHHHHHHHHhcccch
Q 011765 360 FLTHAGWSSVVEALQ---FGMPLIVLTCYAD-QGLN-AKLLEEK--QIVELI-PRDEGDGFFTRNSVAESLRLVLVEEKG 431 (478)
Q Consensus 360 ~ItHgG~~s~~eal~---~GvP~l~~P~~~D-Q~~n-a~~v~~~--g~G~~l-~~~~~~~~~~~~~l~~~i~~ll~~~~~ 431 (478)
+|.=+|...-+-.+- .-+|+|.+|.... .... -.-+.++ |+.+.. .++. -.++..++..|- -+. |
T Consensus 55 iIa~AG~aa~Lpgvva~~t~~PVIgVP~~~~l~G~daLlS~vqmP~gvpVatV~I~~---~~nAa~lA~~Il-~~~---d 127 (157)
T 2ywx_A 55 FIAIAGLAAHLPGVVASLTTKPVIAVPVDAKLDGLDALLSSVQMPPGIPVATVGIDR---GENAAILALEIL-ALK---D 127 (157)
T ss_dssp EEEEEESSCCHHHHHHTTCSSCEEEEEECSSGGGHHHHHHHHSCCTTSCCEECCTTC---HHHHHHHHHHHH-TTT---C
T ss_pred EEEEcCchhhhHHHHHhccCCCEEEecCCCccCcHHHHHHHhcCCCCCeeEEEecCC---cHHHHHHHHHHH-hcC---C
Confidence 777666543333333 3469999998321 1222 2224453 644322 2211 156666665553 334 6
Q ss_pred HHHHHHHHHHHHHhccc
Q 011765 432 QIYRDKAKEMKGLFGDK 448 (478)
Q Consensus 432 ~~~~~~a~~~~~~~~~~ 448 (478)
++++++++..++...+.
T Consensus 128 ~~l~~kl~~~r~~~~~~ 144 (157)
T 2ywx_A 128 ENIAKKLIEYREKMKKK 144 (157)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 89999999999887543
No 90
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=73.19 E-value=1.3 Score=42.33 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=31.1
Q ss_pred ccEEEEecC-CCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011765 6 KLQIAMFPW-LAFGHMIPWLELAKLIAQKGHKIFFIST 42 (478)
Q Consensus 6 ~~~il~~~~-~~~gH~~p~l~La~~L~~rGh~Vt~~~~ 42 (478)
+|+|++++. ++.|-..-..+||..|+++|++|.++..
T Consensus 1 M~~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 1 MALILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp -CEEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 467877655 4669999999999999999999999988
No 91
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=73.07 E-value=4.2 Score=35.08 Aligned_cols=45 Identities=16% Similarity=0.095 Sum_probs=38.4
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPR 51 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~ 51 (478)
++||++.-.++.|-++ ...|.+.|+++|++|.++.++....++..
T Consensus 4 ~k~IllgvTGaiaa~k-~~~ll~~L~~~g~eV~vv~T~~A~~fi~~ 48 (209)
T 3zqu_A 4 PERITLAMTGASGAQY-GLRLLDCLVQEEREVHFLISKAAQLVMAT 48 (209)
T ss_dssp CSEEEEEECSSSCHHH-HHHHHHHHHHTTCEEEEEECHHHHHHHHH
T ss_pred CCEEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECccHHHHHHH
Confidence 5799988888877777 89999999999999999999988776643
No 92
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=72.85 E-value=4.4 Score=33.83 Aligned_cols=44 Identities=5% Similarity=-0.064 Sum_probs=36.7
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPR 51 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~ 51 (478)
+||++.-.++.|=+. ...+.+.|+++|++|.++.++...+++..
T Consensus 6 k~IllgvTGs~aa~k-~~~ll~~L~~~g~~V~vv~T~~A~~fi~~ 49 (175)
T 3qjg_A 6 ENVLICLCGSVNSIN-ISHYIIELKSKFDEVNVIASTNGRKFING 49 (175)
T ss_dssp CEEEEEECSSGGGGG-HHHHHHHHTTTCSEEEEEECTGGGGGSCH
T ss_pred CEEEEEEeCHHHHHH-HHHHHHHHHHCCCEEEEEECcCHHHHhhH
Confidence 588888777766554 88999999999999999999988877754
No 93
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=72.29 E-value=1.8 Score=40.96 Aligned_cols=40 Identities=23% Similarity=0.208 Sum_probs=33.3
Q ss_pred ccEEEEe-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 011765 6 KLQIAMF-PWLAFGHMIPWLELAKLIAQKGHKIFFISTPRN 45 (478)
Q Consensus 6 ~~~il~~-~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~ 45 (478)
+++|+++ .-++.|-..-..+||..|+++|++|.++..+..
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~ 65 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA 65 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTT
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4555555 456779999999999999999999999998874
No 94
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=72.29 E-value=32 Score=33.05 Aligned_cols=96 Identities=10% Similarity=0.025 Sum_probs=53.8
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCC
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLP 84 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~ 84 (478)
++.||++++...... -+.++.++.|++|+++.+.......... ..-+++.++ ...+ .
T Consensus 4 ~~k~l~Il~~~~~~~-----~i~~aa~~lG~~vv~v~~~~~~~~~~~~-----~~d~~~~~~-----~~~d--------~ 60 (425)
T 3vot_A 4 RNKNLAIICQNKHLP-----FIFEEAERLGLKVTFFYNSAEDFPGNLP-----AVERCVPLP-----LFED--------E 60 (425)
T ss_dssp CCCEEEEECCCTTCC-----HHHHHHHHTTCEEEEEEETTSCCCCSCT-----TEEEEEEEC-----TTTC--------H
T ss_pred CCcEEEEECCChhHH-----HHHHHHHHCCCEEEEEECCCcccccCHh-----hccEEEecC-----CCCC--------H
Confidence 346788886543322 3568888889999988755432211110 012344443 1000 0
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEc--CCcccHHHHHHHhCCCe
Q 011765 85 YDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFD--FAAYWLPARARELGIPS 134 (478)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D--~~~~~~~~~A~~lgIP~ 134 (478)
+.+.+.+.++.++.++|.|+.- .....+..+++.+|+|.
T Consensus 61 -----------~~~~~~~~~~~~~~~id~V~~~~e~~~~~~a~l~e~lglpg 101 (425)
T 3vot_A 61 -----------EAAMDVVRQTFVEFPFDGVMTLFEPALPFTAKAAEALNLPG 101 (425)
T ss_dssp -----------HHHHHHHHHHHHHSCCSEEECCCGGGHHHHHHHHHHTTCSS
T ss_pred -----------HHHHHHHHHhhhhcCCCEEEECCchhHHHHHHHHHHcCCCC
Confidence 1122345566677889999853 33334567789999994
No 95
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=71.45 E-value=15 Score=35.95 Aligned_cols=86 Identities=17% Similarity=0.148 Sum_probs=54.7
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChh
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYD 86 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~ 86 (478)
.|++++. .-.-...+++.|.+-|.+|+.+.+....+...+.. . +. ...
T Consensus 314 krv~i~~-----~~~~~~~l~~~L~elGm~vv~~~~~~~~~~~~~~~------~----------~~----------v~~- 361 (458)
T 3pdi_B 314 ARTAIAA-----DPDLLLGFDALLRSMGAHTVAAVVPARAAALVDSP------L----------PS----------VRV- 361 (458)
T ss_dssp CEEEEEC-----CHHHHHHHHHHHHTTTCEEEEEEESSCCSCCTTTT------S----------SC----------EEE-
T ss_pred CEEEEEC-----CcHHHHHHHHHHHHCCCEEEEEEECCCChhhhhCc------c----------Cc----------EEe-
Confidence 4676643 33456788899988899999887765322211110 0 00 000
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEE
Q 011765 87 EVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFF 137 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~ 137 (478)
..+ ..+++++++.+||++|.+. .+..+|+++|||++.+
T Consensus 362 ---------~D~-~~le~~i~~~~pDllig~~---~~~~~a~k~gip~~~~ 399 (458)
T 3pdi_B 362 ---------GDL-EDLEHAARAGQAQLVIGNS---HALASARRLGVPLLRA 399 (458)
T ss_dssp ---------SHH-HHHHHHHHHHTCSEEEECT---THHHHHHHTTCCEEEC
T ss_pred ---------CCH-HHHHHHHHhcCCCEEEECh---hHHHHHHHcCCCEEEe
Confidence 000 1366777888999999984 3678899999999976
No 96
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=71.32 E-value=13 Score=34.30 Aligned_cols=35 Identities=17% Similarity=0.126 Sum_probs=25.5
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
++|||+|+..+.. .....++|.++||+|..+.+.+
T Consensus 6 ~~mrivf~Gt~~f-----a~~~L~~L~~~~~~v~~Vvt~p 40 (318)
T 3q0i_A 6 QSLRIVFAGTPDF-----AARHLAALLSSEHEIIAVYTQP 40 (318)
T ss_dssp -CCEEEEECCSHH-----HHHHHHHHHTSSSEEEEEECCC
T ss_pred cCCEEEEEecCHH-----HHHHHHHHHHCCCcEEEEEcCC
Confidence 3799999977633 3455678888999998776654
No 97
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=71.31 E-value=4.6 Score=42.35 Aligned_cols=112 Identities=13% Similarity=0.069 Sum_probs=79.0
Q ss_pred EeccCChhhhhcCCCceeeeeccChhhHHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCC-CC--cccHHHH
Q 011765 342 YTSWAPQLAILAHDSVGGFLTHAGWSSVVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEG-DG--FFTRNSV 418 (478)
Q Consensus 342 ~~~~vpq~~vL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~-~~--~~~~~~l 418 (478)
+.++.+-.++|..+++ +||=- ...+.|.+..++|+|......|++..- . -|...+..+. +| .-|.++|
T Consensus 603 ~~~~~di~~ll~~aD~--lITDy-SSv~fD~~~l~kPiif~~~D~~~Y~~~----~--rg~y~d~~~~~pg~~~~~~~eL 673 (729)
T 3l7i_A 603 VSNYNDVSELFLISDC--LITDY-SSVMFDYGILKRPQFFFAYDIDKYDKG----L--RGFYMNYMEDLPGPIYTEPYGL 673 (729)
T ss_dssp CTTCSCHHHHHHTCSE--EEESS-CTHHHHHGGGCCCEEEECTTTTTTTSS----C--CSBSSCTTSSSSSCEESSHHHH
T ss_pred CCCCcCHHHHHHHhCE--EEeec-hHHHHhHHhhCCCEEEecCCHHHHhhc----c--CCcccChhHhCCCCeECCHHHH
Confidence 3445666889988888 99985 567899999999999988877776431 1 2334443210 12 2478899
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHHhc---ccCChHHHHHHHHHHHHh
Q 011765 419 AESLRLVLVEEKGQIYRDKAKEMKGLFG---DKGRHDRYVDNFLNYLKN 464 (478)
Q Consensus 419 ~~~i~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~i~~~~~~ 464 (478)
.++|+..... +..|+++.+++.+.+. ++.++++.++.|.+....
T Consensus 674 ~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~dg~as~ri~~~i~~~~~~ 720 (729)
T 3l7i_A 674 AKELKNLDKV--QQQYQEKIDAFYDRFCSVDNGKASQYIGDLIHKDIKE 720 (729)
T ss_dssp HHHHTTHHHH--HHHTHHHHHHHHHHHSTTCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhcc--chhHHHHHHHHHHHhCCccCChHHHHHHHHHHhcCcC
Confidence 9999887763 4678888888888864 566667777877776543
No 98
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=71.10 E-value=6.2 Score=31.27 Aligned_cols=45 Identities=11% Similarity=-0.058 Sum_probs=33.5
Q ss_pred CccEEEEecCCC---ccCHHHHHHHHHHHHhCCCeEEEEeCCCccccC
Q 011765 5 SKLQIAMFPWLA---FGHMIPWLELAKLIAQKGHKIFFISTPRNIDRL 49 (478)
Q Consensus 5 ~~~~il~~~~~~---~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 49 (478)
.++|++|+-..+ ....+..+.+|...+..||+|+++.+..-...+
T Consensus 14 ~~~kl~ii~~sgP~~~~~~~~al~lA~~A~a~g~eV~vFf~~dGV~~l 61 (134)
T 3mc3_A 14 QXXXILIVVTHGPEDLDRTYAPLFMASISASMEYETSVFFMIXGPXLL 61 (134)
T ss_dssp CCCEEEEEECCCGGGTHHHHHHHHHHHHHHHTTCEEEEEECTTGGGGG
T ss_pred ccceEEEEEccCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEeCcHHHH
Confidence 356777654443 467788899999999999999988877665433
No 99
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=69.67 E-value=16 Score=31.52 Aligned_cols=103 Identities=11% Similarity=-0.028 Sum_probs=54.9
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCC--eEEEEeCCC-cc---ccCCCCCCCCCCCeEEEEecCCCCCCCCCCccc
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGH--KIFFISTPR-NI---DRLPRLPQNLASMIQFVKISLPHVDNLRENAEA 79 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh--~Vt~~~~~~-~~---~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~ 79 (478)
+|||+|+..+.. .-+..+.++|.+.+| +|..+.+.. .. +..++.| +.+..++- ..+.
T Consensus 1 m~rI~vl~SG~g---~~~~~~l~~l~~~~~~~~i~~Vvs~~~~~~~~~~A~~~g------Ip~~~~~~---~~~~----- 63 (216)
T 2ywr_A 1 MLKIGVLVSGRG---SNLQAIIDAIESGKVNASIELVISDNPKAYAIERCKKHN------VECKVIQR---KEFP----- 63 (216)
T ss_dssp CEEEEEEECSCC---HHHHHHHHHHHTTSSCEEEEEEEESCTTCHHHHHHHHHT------CCEEECCG---GGSS-----
T ss_pred CCEEEEEEeCCc---HHHHHHHHHHHhCCCCCeEEEEEeCCCChHHHHHHHHcC------CCEEEeCc---cccc-----
Confidence 368888755443 246778888988888 776555433 21 1222333 44443320 0000
Q ss_pred cCCCChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcc-cHHHHHHHhCCCeEEEec
Q 011765 80 TIDLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAY-WLPARARELGIPSGFFSI 139 (478)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~-~~~~~A~~lgIP~i~~~~ 139 (478)
+ .....+.+.+.+++.+||+||.-.+.. ....+-+.....++-+++
T Consensus 64 --~------------r~~~~~~~~~~l~~~~~Dliv~a~y~~il~~~~l~~~~~~~iNiHp 110 (216)
T 2ywr_A 64 --S------------KKEFEERMALELKKKGVELVVLAGFMRILSHNFLKYFPNKVINIHP 110 (216)
T ss_dssp --S------------HHHHHHHHHHHHHHTTCCEEEESSCCSCCCHHHHTTSTTCEEEEES
T ss_pred --c------------hhhhhHHHHHHHHhcCCCEEEEeCchhhCCHHHHhhccCCeEEEcC
Confidence 0 112334566778888999999875532 233333444445665544
No 100
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=69.00 E-value=4.3 Score=36.96 Aligned_cols=33 Identities=18% Similarity=0.393 Sum_probs=24.5
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
||||+.- +.|.+- ..|++.|.++||+|+.++-.
T Consensus 1 MkILVTG--atGfIG--~~L~~~L~~~G~~V~~l~R~ 33 (298)
T 4b4o_A 1 MRVLVGG--GTGFIG--TALTQLLNARGHEVTLVSRK 33 (298)
T ss_dssp CEEEEET--TTSHHH--HHHHHHHHHTTCEEEEEESS
T ss_pred CEEEEEC--CCCHHH--HHHHHHHHHCCCEEEEEECC
Confidence 8888764 334332 46899999999999998753
No 101
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=68.03 E-value=3 Score=35.61 Aligned_cols=44 Identities=7% Similarity=0.015 Sum_probs=37.2
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCCccccCCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQK-GHKIFFISTPRNIDRLPR 51 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~~~~ 51 (478)
|||++.-.++.|-+. ...+.+.|+++ |++|.++.++...+++..
T Consensus 1 ~~IllgvTGsiaa~k-~~~ll~~L~~~~g~~V~vv~T~~A~~fi~~ 45 (197)
T 1sbz_A 1 MKLIVGMTGATGAPL-GVALLQALREMPNVETHLVMSKWAKTTIEL 45 (197)
T ss_dssp CEEEEEECSSSCHHH-HHHHHHHHHTCTTCEEEEEECHHHHHHHHH
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHhccCCEEEEEECchHHHHhHH
Confidence 688888888877665 89999999999 999999999987776653
No 102
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=67.71 E-value=4.9 Score=33.04 Aligned_cols=40 Identities=10% Similarity=0.117 Sum_probs=36.1
Q ss_pred CCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
+++.+|++.+.++..|-....-++..|...|++|++....
T Consensus 16 ~~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~ 55 (161)
T 2yxb_A 16 RRRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLR 55 (161)
T ss_dssp CCSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSB
T ss_pred CCCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCC
Confidence 3578999999999999999999999999999999988754
No 103
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=67.44 E-value=4.3 Score=36.71 Aligned_cols=52 Identities=8% Similarity=0.075 Sum_probs=38.6
Q ss_pred ceeeeeccChhhHHHHHHh------CCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcc
Q 011765 357 VGGFLTHAGWSSVVEALQF------GMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVE 428 (478)
Q Consensus 357 ~~~~ItHgG~~s~~eal~~------GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~ 428 (478)
++++|+=||=||+.+++.. ++|++++|.. . +| -..+ +.++++.++++.++++
T Consensus 36 ~D~vv~lGGDGT~l~aa~~~~~~~~~~PilGIn~G-----------~--lg---fl~~----~~~~~~~~~l~~l~~g 93 (272)
T 2i2c_A 36 PEIVISIGGDGTFLSAFHQYEERLDEIAFIGIHTG-----------H--LG---FYAD----WRPAEADKLVKLLAKG 93 (272)
T ss_dssp CSEEEEEESHHHHHHHHHHTGGGTTTCEEEEEESS-----------S--CC---SSCC----BCGGGHHHHHHHHHTT
T ss_pred CCEEEEEcCcHHHHHHHHHHhhcCCCCCEEEEeCC-----------C--CC---cCCc----CCHHHHHHHHHHHHcC
Confidence 3449999999999999876 8899998761 0 12 1112 5678899999998884
No 104
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=67.05 E-value=7.9 Score=33.82 Aligned_cols=40 Identities=13% Similarity=0.143 Sum_probs=36.2
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
.+++|++..-|+.|-..-++++|..|+++|++|.++..+.
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 3689999999999999999999999999999998877765
No 105
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=67.01 E-value=13 Score=34.21 Aligned_cols=35 Identities=14% Similarity=0.241 Sum_probs=26.5
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRN 45 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~ 45 (478)
+|||+|+..+..+- ...++|.+.||+|..+.+.+.
T Consensus 2 ~mrivf~Gtp~fa~-----~~L~~L~~~~~~v~~Vvt~pd 36 (314)
T 3tqq_A 2 SLKIVFAGTPQFAV-----PTLRALIDSSHRVLAVYTQPD 36 (314)
T ss_dssp CCEEEEEECSGGGH-----HHHHHHHHSSSEEEEEECCCC
T ss_pred CcEEEEECCCHHHH-----HHHHHHHHCCCeEEEEEeCCC
Confidence 69999998886553 446788889999987776543
No 106
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=66.61 E-value=13 Score=35.44 Aligned_cols=87 Identities=10% Similarity=-0.020 Sum_probs=52.7
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC-ccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR-NIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLP 84 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~-~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~ 84 (478)
++|||++..+..+ +.+++++++.|++|+++..+. ........ -++..++ + .
T Consensus 7 ~~~ilI~g~g~~~-----~~~~~a~~~~G~~~v~v~~~~~~~~~~~~a-------d~~~~~~------~----------~ 58 (403)
T 4dim_A 7 NKRLLILGAGRGQ-----LGLYKAAKELGIHTIAGTMPNAHKPCLNLA-------DEISYMD------I----------S 58 (403)
T ss_dssp CCEEEEECCCGGG-----HHHHHHHHHHTCEEEEEECSSCCHHHHHHC-------SEEEECC------T----------T
T ss_pred CCEEEEECCcHhH-----HHHHHHHHHCCCEEEEEcCCCCCCcchhhC-------CeEEEec------C----------C
Confidence 5689998777543 569999999999999986543 21111111 1122221 0 0
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcC---CcccHHHHHHHhCCC
Q 011765 85 YDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDF---AAYWLPARARELGIP 133 (478)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~---~~~~~~~~A~~lgIP 133 (478)
-.+.+.+++++.++|+|+... .......+++.+|+|
T Consensus 59 -------------d~~~l~~~~~~~~~d~v~~~~~~~~~~~~a~~~~~~gl~ 97 (403)
T 4dim_A 59 -------------NPDEVEQKVKDLNLDGAATCCLDTGIVSLARICDKENLV 97 (403)
T ss_dssp -------------CHHHHHHHTTTSCCSEEECCSCSTTHHHHHHHHHHHTCS
T ss_pred -------------CHHHHHHHHHHcCCCEEEeCCcchhHHHHHHHHHHcCcC
Confidence 014566677788999999632 222334667889986
No 107
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=65.85 E-value=59 Score=28.76 Aligned_cols=34 Identities=24% Similarity=0.150 Sum_probs=25.4
Q ss_pred CCCEEE-EcCCc-ccHHHHHHHhCCCeEEEecchHH
Q 011765 110 APDWLL-FDFAA-YWLPARARELGIPSGFFSIFTAA 143 (478)
Q Consensus 110 ~pD~vI-~D~~~-~~~~~~A~~lgIP~i~~~~~~~~ 143 (478)
.||+|| .|+.. ..++.=|.++|||+|.+..+++-
T Consensus 158 ~Pdll~V~Dp~~e~~Ai~EA~~l~IPvIaivDTn~d 193 (256)
T 2vqe_B 158 LPDAIFVVDPTKEAIAVREARKLFIPVIALADTDSD 193 (256)
T ss_dssp CCSEEEESCTTTTHHHHHHHHHTTCCCEECCCTTSC
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEecCCCC
Confidence 799996 55533 24777899999999999775553
No 108
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=65.68 E-value=6.1 Score=36.77 Aligned_cols=37 Identities=14% Similarity=-0.017 Sum_probs=31.0
Q ss_pred CCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
+.++||.|+-.++.| +..+|+.|.++||+|+..-...
T Consensus 2 ~~~~~i~~iGiGg~G----ms~~A~~L~~~G~~V~~~D~~~ 38 (326)
T 3eag_A 2 NAMKHIHIIGIGGTF----MGGLAAIAKEAGFEVSGCDAKM 38 (326)
T ss_dssp -CCCEEEEESCCSHH----HHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCcEEEEEEECHHH----HHHHHHHHHhCCCEEEEEcCCC
Confidence 557899999999988 6679999999999999876543
No 109
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=65.31 E-value=6 Score=37.01 Aligned_cols=41 Identities=5% Similarity=0.041 Sum_probs=35.4
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCcccc
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDR 48 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 48 (478)
=+++...|+.|-..-++.+|..++..|+.|.|++.+...+.
T Consensus 48 LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~q 88 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQ 88 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHH
Confidence 46777888999999999999999999999999998876543
No 110
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=65.05 E-value=4.1 Score=32.32 Aligned_cols=39 Identities=13% Similarity=0.291 Sum_probs=26.3
Q ss_pred CCCCCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 1 MADNSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 1 ~~~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
|...+++||+++.. |.+ -..+|+.|.++||+|+++....
T Consensus 1 m~~~~~~~v~I~G~---G~i--G~~la~~L~~~g~~V~~id~~~ 39 (141)
T 3llv_A 1 MTENGRYEYIVIGS---EAA--GVGLVRELTAAGKKVLAVDKSK 39 (141)
T ss_dssp -----CCSEEEECC---SHH--HHHHHHHHHHTTCCEEEEESCH
T ss_pred CCCCCCCEEEEECC---CHH--HHHHHHHHHHCCCeEEEEECCH
Confidence 44444568888865 332 4678999999999999987643
No 111
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=64.91 E-value=4.9 Score=31.51 Aligned_cols=35 Identities=29% Similarity=0.416 Sum_probs=24.9
Q ss_pred CCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
++.|||+++.. |.+- ..+|+.|.++||+|+++...
T Consensus 2 ~~~m~i~IiG~---G~iG--~~~a~~L~~~g~~v~~~d~~ 36 (140)
T 1lss_A 2 SHGMYIIIAGI---GRVG--YTLAKSLSEKGHDIVLIDID 36 (140)
T ss_dssp ---CEEEEECC---SHHH--HHHHHHHHHTTCEEEEEESC
T ss_pred CCCCEEEEECC---CHHH--HHHHHHHHhCCCeEEEEECC
Confidence 34689999844 4443 46789999999999998754
No 112
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=64.68 E-value=6.9 Score=34.27 Aligned_cols=37 Identities=8% Similarity=0.069 Sum_probs=30.3
Q ss_pred CCccEEEEecCC--CccCHHHHHHHHHHHHhCCCeEEEE
Q 011765 4 NSKLQIAMFPWL--AFGHMIPWLELAKLIAQKGHKIFFI 40 (478)
Q Consensus 4 ~~~~~il~~~~~--~~gH~~p~l~La~~L~~rGh~Vt~~ 40 (478)
+++||.+|++.. +.|-..-...|++.|+++|++|.++
T Consensus 1 ~~~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~ 39 (228)
T 3of5_A 1 SNAMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCL 39 (228)
T ss_dssp CTTCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEe
Confidence 357777666444 5599999999999999999999985
No 113
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=64.21 E-value=9.4 Score=30.32 Aligned_cols=38 Identities=16% Similarity=0.023 Sum_probs=34.3
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
+.||++.+.++-+|-....-++..|..+|++|.+....
T Consensus 3 ~~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~ 40 (137)
T 1ccw_A 3 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVL 40 (137)
T ss_dssp CCEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCC
Confidence 45899999999999999999999999999999987654
No 114
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=63.08 E-value=15 Score=33.91 Aligned_cols=34 Identities=6% Similarity=-0.008 Sum_probs=25.4
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhC-C-CeEEEEeCCC
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQK-G-HKIFFISTPR 44 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~r-G-h~Vt~~~~~~ 44 (478)
++|+||++..+.. ..+++.|++. | ++|..+....
T Consensus 3 ~~~~Ili~g~g~~------~~l~~~l~~~~~~~~v~~~d~~~ 38 (331)
T 2pn1_A 3 QKPHLLITSAGRR------AKLVEYFVKEFKTGRVSTADCSP 38 (331)
T ss_dssp TCCEEEEESCTTC------HHHHHHHHHHCCSSEEEEEESCT
T ss_pred ccceEEEecCCch------HHHHHHHHHhcCCCEEEEEeCCC
Confidence 4689999866554 4789999886 7 8888876543
No 115
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=62.19 E-value=72 Score=27.57 Aligned_cols=153 Identities=14% Similarity=0.012 Sum_probs=80.4
Q ss_pred hhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCCh
Q 011765 269 EWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQ 348 (478)
Q Consensus 269 ~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq 348 (478)
-|++-.+ +++++|..|.++ ...+..|.+.|..+.++-. . +.+.+..-....++....-.-+
T Consensus 25 ifl~L~g-k~VLVVGgG~va-------~~ka~~Ll~~GA~VtVvap-~----------~~~~l~~l~~~~~i~~i~~~~~ 85 (223)
T 3dfz_A 25 VMLDLKG-RSVLVVGGGTIA-------TRRIKGFLQEGAAITVVAP-T----------VSAEINEWEAKGQLRVKRKKVG 85 (223)
T ss_dssp EEECCTT-CCEEEECCSHHH-------HHHHHHHGGGCCCEEEECS-S----------CCHHHHHHHHTTSCEEECSCCC
T ss_pred cEEEcCC-CEEEEECCCHHH-------HHHHHHHHHCCCEEEEECC-C----------CCHHHHHHHHcCCcEEEECCCC
Confidence 3555443 568888877554 3455566667887665432 1 1122222112223333222223
Q ss_pred hhhhcCCCceeeeeccChhhHHHHHHh----CCcEeccccccchhhHH-----HHHhhcCeEEEeeccCCCCcccHHHHH
Q 011765 349 LAILAHDSVGGFLTHAGWSSVVEALQF----GMPLIVLTCYADQGLNA-----KLLEEKQIVELIPRDEGDGFFTRNSVA 419 (478)
Q Consensus 349 ~~vL~~~~~~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na-----~~v~~~g~G~~l~~~~~~~~~~~~~l~ 419 (478)
.+.|..+++ +|..-|.-.+.+.++. |+|+-+ .|.+..+ ..+.+-++-+.+.... ....-+..|+
T Consensus 86 ~~dL~~adL--VIaAT~d~~~N~~I~~~ak~gi~VNv----vD~p~~~~f~~Paiv~rg~l~iaIST~G-~sP~la~~iR 158 (223)
T 3dfz_A 86 EEDLLNVFF--IVVATNDQAVNKFVKQHIKNDQLVNM----ASSFSDGNIQIPAQFSRGRLSLAISTDG-ASPLLTKRIK 158 (223)
T ss_dssp GGGSSSCSE--EEECCCCTHHHHHHHHHSCTTCEEEC---------CCSEECCEEEEETTEEEEEECTT-SCHHHHHHHH
T ss_pred HhHhCCCCE--EEECCCCHHHHHHHHHHHhCCCEEEE----eCCcccCeEEEeeEEEeCCEEEEEECCC-CCcHHHHHHH
Confidence 445666666 8888887666555543 555533 2333222 2222334555555433 1124456788
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHHhccc
Q 011765 420 ESLRLVLVEEKGQIYRDKAKEMKGLFGDK 448 (478)
Q Consensus 420 ~~i~~ll~~~~~~~~~~~a~~~~~~~~~~ 448 (478)
+.|++++.. ....+.+.+.++++.++..
T Consensus 159 ~~ie~~lp~-~~~~~~~~~~~~R~~vk~~ 186 (223)
T 3dfz_A 159 EDLSSNYDE-SYTQYTQFLYECRVLIHRL 186 (223)
T ss_dssp HHHHHHSCT-HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHccH-HHHHHHHHHHHHHHHHHHH
Confidence 888877752 2467888888888888643
No 116
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=61.76 E-value=11 Score=36.79 Aligned_cols=40 Identities=18% Similarity=0.011 Sum_probs=33.7
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCCccc
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQ-KGHKIFFISTPRNID 47 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~ 47 (478)
=+++...|+.|-..-++.+|...+. .|..|.|++.+...+
T Consensus 202 l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~ 242 (444)
T 2q6t_A 202 LNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAA 242 (444)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHH
Confidence 4677788899999999999999887 489999999886544
No 117
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=61.76 E-value=6.5 Score=38.21 Aligned_cols=27 Identities=15% Similarity=-0.047 Sum_probs=20.2
Q ss_pred CCccEEEEecCCCccCHHHHHHHHHHHHhCCC
Q 011765 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGH 35 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh 35 (478)
+++||||++..++.. .+||+.|.+.+.
T Consensus 1 ~~~mkvlviG~ggre-----~ala~~l~~s~~ 27 (431)
T 3mjf_A 1 SNAMNILIIGNGGRE-----HALGWKAAQSPL 27 (431)
T ss_dssp --CEEEEEEECSHHH-----HHHHHHHTTCTT
T ss_pred CCCcEEEEECCCHHH-----HHHHHHHHhCCC
Confidence 458999999777644 478999998865
No 118
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=61.48 E-value=37 Score=32.88 Aligned_cols=37 Identities=11% Similarity=-0.044 Sum_probs=26.9
Q ss_pred CCCCccEEEEecCCCccCHHHHHHHHHHHHhC-CCeEEEEeCC
Q 011765 2 ADNSKLQIAMFPWLAFGHMIPWLELAKLIAQK-GHKIFFISTP 43 (478)
Q Consensus 2 ~~~~~~~il~~~~~~~gH~~p~l~La~~L~~r-Gh~Vt~~~~~ 43 (478)
...++||||++..++ ....++..|+++ |++++++.+.
T Consensus 17 ~~~~~~~iliiG~g~-----r~~a~a~~~~~~~g~~~v~~~~~ 54 (451)
T 2yrx_A 17 YFQSHMNVLVIGRGG-----REHAIAWKAAQSPLVGKLYVAPG 54 (451)
T ss_dssp CCCSSEEEEEEECSH-----HHHHHHHHHHTCTTEEEEEEEEC
T ss_pred ccCCCCEEEEECCCH-----HHHHHHHHHHhcCCCCEEEEECC
Confidence 334579999998773 457788888775 8887777653
No 119
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=61.24 E-value=9.9 Score=32.67 Aligned_cols=40 Identities=15% Similarity=0.017 Sum_probs=36.2
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
++.+|++.+.++..|-....-++..|..+|++|.++....
T Consensus 87 ~~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~v 126 (210)
T 1y80_A 87 SVGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDI 126 (210)
T ss_dssp CCCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSB
T ss_pred CCCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCC
Confidence 4569999999999999999999999999999999988653
No 120
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=61.20 E-value=45 Score=28.61 Aligned_cols=103 Identities=12% Similarity=0.087 Sum_probs=57.1
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCcc----ccCCCCCCCCCCCeEEEEecCCCCCCCCCCccc
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQK--GHKIFFISTPRNI----DRLPRLPQNLASMIQFVKISLPHVDNLRENAEA 79 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~----~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~ 79 (478)
+|||.++-.+. |+ -+..+.++|.+. +|+|..+.+.... +..++.| +.+..++- ..+.
T Consensus 3 m~ki~vl~sG~-g~--~~~~~l~~l~~~~l~~~I~~Vit~~~~~~v~~~A~~~g------Ip~~~~~~---~~~~----- 65 (212)
T 3av3_A 3 MKRLAVFASGS-GT--NFQAIVDAAKRGDLPARVALLVCDRPGAKVIERAAREN------VPAFVFSP---KDYP----- 65 (212)
T ss_dssp CEEEEEECCSS-CH--HHHHHHHHHHTTCCCEEEEEEEESSTTCHHHHHHHHTT------CCEEECCG---GGSS-----
T ss_pred CcEEEEEEECC-cH--HHHHHHHHHHhCCCCCeEEEEEeCCCCcHHHHHHHHcC------CCEEEeCc---cccc-----
Confidence 56887765554 33 366777888887 7899866654321 1223333 55443320 0000
Q ss_pred cCCCChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcc-cHHHHHHHhCCCeEEEec
Q 011765 80 TIDLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAY-WLPARARELGIPSGFFSI 139 (478)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~-~~~~~A~~lgIP~i~~~~ 139 (478)
+ -....+.+.+.+++.+||+||.=.+.. ....+-....-.++-+++
T Consensus 66 --~------------~~~~~~~~~~~l~~~~~Dliv~a~y~~il~~~~l~~~~~~~iNiHp 112 (212)
T 3av3_A 66 --S------------KAAFESEILRELKGRQIDWIALAGYMRLIGPTLLSAYEGKIVNIHP 112 (212)
T ss_dssp --S------------HHHHHHHHHHHHHHTTCCEEEESSCCSCCCHHHHHHTTTCEEEEES
T ss_pred --c------------hhhhHHHHHHHHHhcCCCEEEEchhhhhCCHHHHhhhcCCEEEEec
Confidence 0 012334566778888999999876532 333444555556666644
No 121
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=61.03 E-value=9.9 Score=37.07 Aligned_cols=41 Identities=12% Similarity=0.043 Sum_probs=35.9
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCcccc
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDR 48 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 48 (478)
=+++...|+.|-..-++.+|...+.+|..|.|++.+...+.
T Consensus 199 liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~q 239 (444)
T 3bgw_A 199 FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKE 239 (444)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTTH
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHHH
Confidence 46778889999999999999999999999999998876553
No 122
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=59.53 E-value=13 Score=33.25 Aligned_cols=41 Identities=12% Similarity=-0.022 Sum_probs=36.7
Q ss_pred CCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
.++.+|++.+.++..|-....-++..|..+|++|.+++...
T Consensus 121 ~~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~v 161 (258)
T 2i2x_B 121 KTKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDV 161 (258)
T ss_dssp CCSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEEC
T ss_pred CCCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCC
Confidence 34679999999999999999999999999999999887543
No 123
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=59.32 E-value=62 Score=31.04 Aligned_cols=137 Identities=14% Similarity=-0.012 Sum_probs=77.1
Q ss_pred CceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCC-
Q 011765 277 GSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHD- 355 (478)
Q Consensus 277 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~- 355 (478)
.+.|-|-+||.+ +....++.+..|+..|.++-.-+. .....|+... .++-+..- ...
T Consensus 265 ~~~V~Ii~gs~S--D~~~~~~a~~~l~~~gi~~~v~V~--------saHR~p~~~~-----------~~~~~~~~-~g~~ 322 (425)
T 2h31_A 265 QCRVVVLMGSTS--DLGHCEKIKKACGNFGIPCELRVT--------SAHKGPDETL-----------RIKAEYEG-DGIP 322 (425)
T ss_dssp CCEEEEEESCGG--GHHHHHHHHHHHHHTTCCEEEEEC--------CTTTCHHHHH-----------HHHHHHHT-TCCC
T ss_pred CCeEEEEecCcc--cHHHHHHHHHHHHHcCCceEEeee--------eccCCHHHHH-----------HHHHHHHH-CCCC
Confidence 457778888877 778888889999999988544333 2234554221 12211111 112
Q ss_pred CceeeeeccChh----hHHHHHHhCCcEeccccccchhhHHHH--Hhh--cCeEEEeeccCCCCcccHHHHHHHHHHHhc
Q 011765 356 SVGGFLTHAGWS----SVVEALQFGMPLIVLTCYADQGLNAKL--LEE--KQIVELIPRDEGDGFFTRNSVAESLRLVLV 427 (478)
Q Consensus 356 ~~~~~ItHgG~~----s~~eal~~GvP~l~~P~~~DQ~~na~~--v~~--~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~ 427 (478)
.+ +|.=+|+. ++..++ .-+|+|++|....-...... +.+ .|+.+..-... .++.-++..|- -+.
T Consensus 323 ~v--iIa~AG~~a~Lpgvva~~-t~~PVIgvP~~~~~~G~daLls~vqmp~g~pvatv~~~----~nAa~~A~~Il-~~~ 394 (425)
T 2h31_A 323 TV--FVAVAGRSNGLGPVMSGN-TAYPVISCPPLTPDWGVQDVWSSLRLPSGLGCSTVLSP----EGSAQFAAQIF-GLS 394 (425)
T ss_dssp EE--EEEECCSSCCHHHHHHHH-CSSCEEECCCCCTTTHHHHGGGTSSCCSSCCCEECCCH----HHHHHHHHHHH-HTT
T ss_pred eE--EEEEcCcccchHhHHhcc-CCCCEEEeeCccccccHHHHHHHhcCCCCCceEEecCc----hHHHHHHHHHH-ccC
Confidence 34 77766652 444444 46899999984221122222 334 24443322222 46666665554 344
Q ss_pred ccchHHHHHHHHHHHHHhc
Q 011765 428 EEKGQIYRDKAKEMKGLFG 446 (478)
Q Consensus 428 ~~~~~~~~~~a~~~~~~~~ 446 (478)
|+.++++++..+....
T Consensus 395 ---~~~l~~kl~~~~~~~~ 410 (425)
T 2h31_A 395 ---NHLVWSKLRASILNTW 410 (425)
T ss_dssp ---CHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHH
Confidence 6888888888877653
No 124
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=59.15 E-value=10 Score=35.22 Aligned_cols=38 Identities=21% Similarity=0.144 Sum_probs=32.2
Q ss_pred cEEEEe-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 7 LQIAMF-PWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 7 ~~il~~-~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
++|+++ .-++.|-..-..+||..|+++|++|.++..+.
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 355554 45677999999999999999999999999887
No 125
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=58.92 E-value=5.3 Score=37.61 Aligned_cols=42 Identities=19% Similarity=0.166 Sum_probs=34.8
Q ss_pred CCccEEEEe-cCCCccCHHHHHHHHHHHH--hCCCeEEEEeCCCc
Q 011765 4 NSKLQIAMF-PWLAFGHMIPWLELAKLIA--QKGHKIFFISTPRN 45 (478)
Q Consensus 4 ~~~~~il~~-~~~~~gH~~p~l~La~~L~--~rGh~Vt~~~~~~~ 45 (478)
+.+++|+++ .-++.|-..-..+||..|+ ++|++|.++..+..
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~ 59 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPA 59 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 345678776 4567799999999999999 89999999998753
No 126
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=58.72 E-value=15 Score=33.25 Aligned_cols=36 Identities=8% Similarity=0.067 Sum_probs=25.4
Q ss_pred ccEEEEe-cCCCccCHHHH--HHHHHHHHhCCCeEEEEe
Q 011765 6 KLQIAMF-PWLAFGHMIPW--LELAKLIAQKGHKIFFIS 41 (478)
Q Consensus 6 ~~~il~~-~~~~~gH~~p~--l~La~~L~~rGh~Vt~~~ 41 (478)
+||||++ ..|-...++-. -.+++.|.+.||+|+++-
T Consensus 22 ~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~D 60 (280)
T 4gi5_A 22 SMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSD 60 (280)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 6899886 55655445442 346788888999999863
No 127
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=58.44 E-value=8.8 Score=32.99 Aligned_cols=43 Identities=5% Similarity=-0.157 Sum_probs=31.0
Q ss_pred ccEEEEecCCCccCHHH-HHHHHHHHHhCCCeEEEEeCCCccccC
Q 011765 6 KLQIAMFPWLAFGHMIP-WLELAKLIAQKGHKIFFISTPRNIDRL 49 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p-~l~La~~L~~rGh~Vt~~~~~~~~~~~ 49 (478)
++||++.-.++ +..+- ...+.+.|+++|++|.++.++.....+
T Consensus 5 ~k~IllgiTGs-iaayk~~~~ll~~L~~~g~eV~vv~T~~A~~vl 48 (207)
T 3mcu_A 5 GKRIGFGFTGS-HCTYEEVMPHLEKLIAEGAEVRPVVSYTVQSTN 48 (207)
T ss_dssp TCEEEEEECSC-GGGGTTSHHHHHHHHHTTCEEEEEECC------
T ss_pred CCEEEEEEECh-HHHHHHHHHHHHHHHhCCCEEEEEEehHHHHHH
Confidence 46888877776 45665 889999999999999999998876443
No 128
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=58.07 E-value=14 Score=31.12 Aligned_cols=44 Identities=14% Similarity=0.073 Sum_probs=37.4
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPR 51 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~ 51 (478)
+||++.-.++.|-+ =...+.+.|+++|++|.++.++...+++..
T Consensus 2 k~IllgvTGs~aa~-k~~~l~~~L~~~g~~V~vv~T~~A~~~i~~ 45 (189)
T 2ejb_A 2 QKIALCITGASGVI-YGIKLLQVLEELDFSVDLVISRNAKVVLKE 45 (189)
T ss_dssp CEEEEEECSSTTHH-HHHHHHHHHHHTTCEEEEEECHHHHHHHHH
T ss_pred CEEEEEEECHHHHH-HHHHHHHHHHHCCCEEEEEEChhHHHHhhH
Confidence 48999888888854 578999999999999999999988777664
No 129
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=57.91 E-value=44 Score=29.43 Aligned_cols=38 Identities=13% Similarity=0.085 Sum_probs=25.9
Q ss_pred ccEEEEecCCCc-cCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 6 KLQIAMFPWLAF-GHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 6 ~~~il~~~~~~~-gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
.|||+++..-+. +-...+...++.+..-|.+|++++.+
T Consensus 1 ~mrilvINPnts~~~T~~i~~~~~~~~~p~~~i~~~t~~ 39 (245)
T 3qvl_A 1 SVRIQVINPNTSLAMTETIGAAARAVAAPGTEILAVCPR 39 (245)
T ss_dssp CEEEEEECSSCCHHHHHHHHHHHHHHCCTTEEEEEECCS
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 489988855544 44456677788777667787777654
No 130
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=57.77 E-value=9.1 Score=32.13 Aligned_cols=45 Identities=4% Similarity=-0.028 Sum_probs=36.3
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRL 52 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~ 52 (478)
.||++.-.++.|=+ -...+.+.|+++|++|.++.++...+++...
T Consensus 3 k~IllgvTGs~aa~-k~~~l~~~L~~~g~~V~vv~T~~A~~fi~~~ 47 (181)
T 1g63_A 3 GKLLICATASINVI-NINHYIVELKQHFDEVNILFSPSSKNFINTD 47 (181)
T ss_dssp CCEEEEECSCGGGG-GHHHHHHHHTTTSSCEEEEECGGGGGTSCGG
T ss_pred CEEEEEEECHHHHH-HHHHHHHHHHHCCCEEEEEEchhHHHHHHHH
Confidence 37877777766555 6789999999999999999999888777653
No 131
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=56.45 E-value=65 Score=27.57 Aligned_cols=102 Identities=8% Similarity=-0.015 Sum_probs=57.1
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCcc----ccCCCCCCCCCCCeEEEEecCCCCCCCCCCcccc
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQK--GHKIFFISTPRNI----DRLPRLPQNLASMIQFVKISLPHVDNLRENAEAT 80 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~----~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~ 80 (478)
|||+++..+..+ -+.+|.+++.+. +|+|..+.+.... +..++.| +.+..++- ..+.+
T Consensus 1 ~ri~vl~Sg~gs---nl~ali~~~~~~~~~~~i~~Vis~~~~~~~~~~A~~~g------Ip~~~~~~---~~~~~----- 63 (212)
T 1jkx_A 1 MNIVVLISGNGS---NLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAG------IATHTLIA---SAFDS----- 63 (212)
T ss_dssp CEEEEEESSCCH---HHHHHHHHHHTTSSSSEEEEEEESCTTCHHHHHHHHTT------CEEEECCG---GGCSS-----
T ss_pred CEEEEEEECCcH---HHHHHHHHHHcCCCCceEEEEEeCCCchHHHHHHHHcC------CcEEEeCc---ccccc-----
Confidence 477666554433 367788888776 6888766654321 2233444 66554420 01100
Q ss_pred CCCChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCc-ccHHHHHHHhCCCeEEEec
Q 011765 81 IDLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAA-YWLPARARELGIPSGFFSI 139 (478)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~-~~~~~~A~~lgIP~i~~~~ 139 (478)
.....+.+.+.+++.+||+||.-.+. .....+-......++-+++
T Consensus 64 --------------r~~~~~~~~~~l~~~~~Dliv~agy~~il~~~~l~~~~~~~iNiHp 109 (212)
T 1jkx_A 64 --------------REAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHP 109 (212)
T ss_dssp --------------HHHHHHHHHHHHGGGCCSEEEESSCCSCCCHHHHHHTTTSEEEEES
T ss_pred --------------hhhccHHHHHHHHhcCCCEEEEeChhhhCCHHHHhhccCCEEEEcc
Confidence 02233456778888999999987653 2233444555566666644
No 132
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=56.22 E-value=18 Score=28.42 Aligned_cols=39 Identities=10% Similarity=0.076 Sum_probs=27.7
Q ss_pred HHHHhhcCCCEEEEcCCcc--cHHHHHHHh-------CCCeEEEecch
Q 011765 103 AKLLQSLAPDWLLFDFAAY--WLPARAREL-------GIPSGFFSIFT 141 (478)
Q Consensus 103 ~~ll~~~~pD~vI~D~~~~--~~~~~A~~l-------gIP~i~~~~~~ 141 (478)
.+++++.+||+||.|...+ .|..+++.+ .+|+|.++...
T Consensus 50 l~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI~lTa~~ 97 (134)
T 3to5_A 50 LPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEA 97 (134)
T ss_dssp HHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEEEEESSC
T ss_pred HHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEEEEECCC
Confidence 4455677999999998776 466666554 58988876543
No 133
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=55.98 E-value=21 Score=27.81 Aligned_cols=44 Identities=16% Similarity=0.139 Sum_probs=31.2
Q ss_pred cEEEEe-cCCCc--cCHHHHHHHHHHHHhCCCeE-EEEeCCCccccCC
Q 011765 7 LQIAMF-PWLAF--GHMIPWLELAKLIAQKGHKI-FFISTPRNIDRLP 50 (478)
Q Consensus 7 ~~il~~-~~~~~--gH~~p~l~La~~L~~rGh~V-t~~~~~~~~~~~~ 50 (478)
||++|+ +.+-+ ......+.+|.++.+.||+| .++-...-.....
T Consensus 1 mk~~iiv~~~p~~~~~~~~al~~a~a~~~~g~~v~~vff~~dGV~~~~ 48 (130)
T 2hy5_A 1 MKFALQINEGPYQHQASDSAYQFAKAALEKGHEIFRVFFYHDGVNNST 48 (130)
T ss_dssp CEEEEEECSCTTTSTHHHHHHHHHHHHHHTTCEEEEEEECGGGGGGGB
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCeeCEEEEechHHHHHh
Confidence 566554 44334 45667899999999999999 8888777655443
No 134
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=55.92 E-value=62 Score=30.42 Aligned_cols=36 Identities=8% Similarity=-0.014 Sum_probs=27.1
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRN 45 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~ 45 (478)
++|||+++..+ .-...+++++++.|++|..+.....
T Consensus 10 ~~~~ili~g~g-----~~~~~~~~a~~~~G~~v~~~~~~~~ 45 (391)
T 1kjq_A 10 AATRVMLLGSG-----ELGKEVAIECQRLGVEVIAVDRYAD 45 (391)
T ss_dssp TCCEEEEESCS-----HHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CCCEEEEECCC-----HHHHHHHHHHHHcCCEEEEEECCCC
Confidence 46899999543 1346789999999999988876543
No 135
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=55.55 E-value=12 Score=32.24 Aligned_cols=46 Identities=11% Similarity=0.054 Sum_probs=36.2
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCCccccCCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQ-KGHKIFFISTPRNIDRLPRL 52 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~~~~~ 52 (478)
++||++.-.++.+=+ -...|++.|++ +|++|.++.++...+++...
T Consensus 19 ~k~IllgvTGsiaa~-k~~~lv~~L~~~~g~~V~vv~T~~A~~fi~~~ 65 (206)
T 1qzu_A 19 KFHVLVGVTGSVAAL-KLPLLVSKLLDIPGLEVAVVTTERAKHFYSPQ 65 (206)
T ss_dssp SEEEEEEECSSGGGG-THHHHHHHHC---CEEEEEEECTGGGGSSCGG
T ss_pred CCEEEEEEeChHHHH-HHHHHHHHHhcccCCEEEEEECHhHHHHhCHH
Confidence 568888877777644 46899999999 89999999999988877654
No 136
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=54.76 E-value=69 Score=26.95 Aligned_cols=43 Identities=5% Similarity=-0.085 Sum_probs=32.1
Q ss_pred HHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEEecchHHHHH
Q 011765 101 PMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFFSIFTAATLG 146 (478)
Q Consensus 101 ~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~ 146 (478)
...+.+++.+.|+||.|. .+..+|+++|+|.+.+.++.-+...
T Consensus 133 ~~i~~l~~~G~~vvVG~~---~~~~~A~~~Gl~~vli~sg~eSI~~ 175 (196)
T 2q5c_A 133 TLISKVKTENIKIVVSGK---TVTDEAIKQGLYGETINSGEESLRR 175 (196)
T ss_dssp HHHHHHHHTTCCEEEECH---HHHHHHHHTTCEEEECCCCHHHHHH
T ss_pred HHHHHHHHCCCeEEECCH---HHHHHHHHcCCcEEEEecCHHHHHH
Confidence 344455667999999983 3578999999999998775555433
No 137
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=54.34 E-value=15 Score=31.76 Aligned_cols=43 Identities=12% Similarity=-0.045 Sum_probs=37.0
Q ss_pred CCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCcc
Q 011765 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNI 46 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (478)
.++.||++.+.++..|-....-++..|..+|++|++++.....
T Consensus 90 ~~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~ 132 (215)
T 3ezx_A 90 EEAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLN 132 (215)
T ss_dssp --CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCH
T ss_pred CCCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCH
Confidence 3468999999999999999999999999999999998765443
No 138
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=53.96 E-value=47 Score=28.95 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=21.7
Q ss_pred ccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 011765 17 FGHMIPWLELAKLIAQKGHKIFFISTPRN 45 (478)
Q Consensus 17 ~gH~~p~l~La~~L~~rGh~Vt~~~~~~~ 45 (478)
.|. .-.++|++|.++|++|++++.+..
T Consensus 28 SG~--mG~aiA~~~~~~Ga~V~lv~~~~~ 54 (232)
T 2gk4_A 28 TGH--LGKIITETLLSAGYEVCLITTKRA 54 (232)
T ss_dssp CCH--HHHHHHHHHHHTTCEEEEEECTTS
T ss_pred CCH--HHHHHHHHHHHCCCEEEEEeCCcc
Confidence 554 346789999999999999987753
No 139
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=53.84 E-value=8.7 Score=34.34 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=38.6
Q ss_pred eeeeeccChhhHHHHHHh---CCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcc
Q 011765 358 GGFLTHAGWSSVVEALQF---GMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVE 428 (478)
Q Consensus 358 ~~~ItHgG~~s~~eal~~---GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~ 428 (478)
+++|+=||=||+.+++.. ++|+++++... +|... + +.++++.++++.++++
T Consensus 43 D~vv~~GGDGTll~~a~~~~~~~PilGIn~G~-------------~Gfl~---~----~~~~~~~~al~~i~~g 96 (258)
T 1yt5_A 43 DLIVVVGGDGTVLKAAKKAADGTPMVGFKAGR-------------LGFLT---S----YTLDEIDRFLEDLRNW 96 (258)
T ss_dssp SEEEEEECHHHHHHHHTTBCTTCEEEEEESSS-------------CCSSC---C----BCGGGHHHHHHHHHTT
T ss_pred CEEEEEeCcHHHHHHHHHhCCCCCEEEEECCC-------------CCccC---c----CCHHHHHHHHHHHHcC
Confidence 449999999999999887 88998887421 12211 2 5788899999999884
No 140
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=53.78 E-value=28 Score=32.47 Aligned_cols=43 Identities=16% Similarity=0.218 Sum_probs=30.0
Q ss_pred ccEEEEecCCCcc--C--HHHHHHHHHHHHhCCCeEEEEeCCCcccc
Q 011765 6 KLQIAMFPWLAFG--H--MIPWLELAKLIAQKGHKIFFISTPRNIDR 48 (478)
Q Consensus 6 ~~~il~~~~~~~g--H--~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 48 (478)
+.-|++.|..+.. . ...+..|++.|.++|++|++++.+...+.
T Consensus 185 ~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~g~~vvl~g~~~e~~~ 231 (349)
T 3tov_A 185 DILIGFNIGSAVPEKRWPAERFAHVADYFGRLGYKTVFFGGPMDLEM 231 (349)
T ss_dssp CCEEEEECCCSSGGGCCCHHHHHHHHHHHHHHTCEEEECCCTTTHHH
T ss_pred CCEEEEeCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEeCcchHHH
Confidence 3456676666442 2 34589999999999999998776654443
No 141
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=53.72 E-value=10 Score=29.40 Aligned_cols=37 Identities=16% Similarity=-0.006 Sum_probs=25.4
Q ss_pred HHHHHHhhcCCCEEEEcCCcc--cHHHHHH---HhCCCeEEE
Q 011765 101 PMAKLLQSLAPDWLLFDFAAY--WLPARAR---ELGIPSGFF 137 (478)
Q Consensus 101 ~l~~ll~~~~pD~vI~D~~~~--~~~~~A~---~lgIP~i~~ 137 (478)
.-.+++++.+||+||.|...+ .|..+++ ..++|+|.+
T Consensus 44 eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~l 85 (123)
T 2lpm_A 44 EALDIARKGQFDIAIIDVNLDGEPSYPVADILAERNVPFIFA 85 (123)
T ss_dssp HHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHHHTCCSSCCB
T ss_pred HHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHcCCCCEEEE
Confidence 334566778999999998666 3444443 357897765
No 142
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=53.44 E-value=4.1 Score=40.09 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=29.4
Q ss_pred CCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
++.|||+++..+-.| ..||+.|.++||+|+++-..+
T Consensus 1 ~~~M~iiI~G~G~vG-----~~la~~L~~~~~~v~vId~d~ 36 (461)
T 4g65_A 1 SNAMKIIILGAGQVG-----GTLAENLVGENNDITIVDKDG 36 (461)
T ss_dssp -CCEEEEEECCSHHH-----HHHHHHTCSTTEEEEEEESCH
T ss_pred CCcCEEEEECCCHHH-----HHHHHHHHHCCCCEEEEECCH
Confidence 468999999887666 469999999999999987653
No 143
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=53.40 E-value=11 Score=30.35 Aligned_cols=33 Identities=15% Similarity=0.194 Sum_probs=25.8
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
+.||+++.. |++- ..+++.|.++||+|+++...
T Consensus 3 ~~~vlI~G~---G~vG--~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 3 KDHFIVCGH---SILA--INTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CSCEEEECC---SHHH--HHHHHHHHHTTCCEEEEECC
T ss_pred CCcEEEECC---CHHH--HHHHHHHHHCCCCEEEEECC
Confidence 348888854 4433 78899999999999999874
No 144
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=52.92 E-value=9.8 Score=33.31 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=33.7
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
|||.|..-++.|=..-..+||..|+++|++|.++-...
T Consensus 1 mkI~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 1 MKLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 78999777788999999999999999999999987655
No 145
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=52.42 E-value=53 Score=28.41 Aligned_cols=38 Identities=8% Similarity=-0.058 Sum_probs=31.0
Q ss_pred cEEEEecCC-CccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 7 LQIAMFPWL-AFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 7 ~~il~~~~~-~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
-.|.+++.+ +.|=..-++.++..+..+|..|.++.+..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 355555554 88999999999999999999999987554
No 146
>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=52.39 E-value=10 Score=33.21 Aligned_cols=37 Identities=19% Similarity=0.352 Sum_probs=29.8
Q ss_pred CCCCCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 1 MADNSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 1 ~~~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
|.. .+|||.|+..+..|- +||+.|+++||+|+.+...
T Consensus 2 ~~~-~~mkI~IIG~G~~G~-----sLA~~L~~~G~~V~~~~~~ 38 (232)
T 3dfu_A 2 MQA-PRLRVGIFDDGSSTV-----NMAEKLDSVGHYVTVLHAP 38 (232)
T ss_dssp -CC-CCCEEEEECCSCCCS-----CHHHHHHHTTCEEEECSSG
T ss_pred CCC-CCcEEEEEeeCHHHH-----HHHHHHHHCCCEEEEecCH
Confidence 443 579999999998874 5899999999999987663
No 147
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=52.17 E-value=22 Score=32.53 Aligned_cols=33 Identities=15% Similarity=0.069 Sum_probs=22.5
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
|||+|+..+. ......++|.++||+|..+.+..
T Consensus 1 mrivf~gt~~-----fa~~~L~~L~~~~~~i~~Vvt~~ 33 (305)
T 2bln_A 1 MKTVVFAYHD-----MGCLGIEALLAAGYEISAIFTHT 33 (305)
T ss_dssp CEEEEEECHH-----HHHHHHHHHHHTTCEEEEEECCC
T ss_pred CEEEEEEcCH-----HHHHHHHHHHHCCCcEEEEEcCC
Confidence 6888885532 22445677888899998776653
No 148
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=52.15 E-value=27 Score=26.22 Aligned_cols=39 Identities=15% Similarity=0.138 Sum_probs=26.3
Q ss_pred HHHHHhhcCCCEEEEcCCcc--cHHHHHHHh-------CCCeEEEecc
Q 011765 102 MAKLLQSLAPDWLLFDFAAY--WLPARAREL-------GIPSGFFSIF 140 (478)
Q Consensus 102 l~~ll~~~~pD~vI~D~~~~--~~~~~A~~l-------gIP~i~~~~~ 140 (478)
..+.+++.+||+||.|...+ .|..+.+.+ ++|++.++..
T Consensus 38 al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~ 85 (122)
T 3gl9_A 38 ALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAK 85 (122)
T ss_dssp HHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEESC
T ss_pred HHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEecC
Confidence 34455677999999997655 355555443 5888887653
No 149
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=52.04 E-value=19 Score=27.14 Aligned_cols=36 Identities=8% Similarity=0.029 Sum_probs=27.8
Q ss_pred CCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEE
Q 011765 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFF 39 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~ 39 (478)
++.|||+++|..+.|+-.-...|-+.+.++|.++.+
T Consensus 2 ~~~mkIlvvC~~G~~TSll~~kl~~~~~~~gi~~~i 37 (109)
T 2l2q_A 2 PGSMNILLVCGAGMSTSMLVQRIEKYAKSKNINATI 37 (109)
T ss_dssp CCCEEEEEESSSSCSSCHHHHHHHHHHHHHTCSEEE
T ss_pred CCceEEEEECCChHhHHHHHHHHHHHHHHCCCCeEE
Confidence 445999999999888876666777888888876543
No 150
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=51.27 E-value=25 Score=20.00 Aligned_cols=29 Identities=7% Similarity=0.147 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHhc
Q 011765 416 NSVAESLRLVLVEEKGQIYRDKAKEMKGLFG 446 (478)
Q Consensus 416 ~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~ 446 (478)
.+|+++|++++.. +......+.++++.+.
T Consensus 4 nQLEdkVEeLl~~--~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 4 KQLADAVEELASA--NYHLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh--hHHHHHHHHHHHHHhc
Confidence 4788999999984 6788888999888764
No 151
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=51.11 E-value=23 Score=30.93 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=24.1
Q ss_pred CCCEEE-EcCCc-ccHHHHHHHhCCCeEEEecchH
Q 011765 110 APDWLL-FDFAA-YWLPARARELGIPSGFFSIFTA 142 (478)
Q Consensus 110 ~pD~vI-~D~~~-~~~~~~A~~lgIP~i~~~~~~~ 142 (478)
.||+|| .|+.. .-++.=|.++|||+|.+..+++
T Consensus 157 ~Pdll~v~Dp~~e~~ai~EA~~l~IPvIaivDTn~ 191 (231)
T 3bbn_B 157 LPDIVIIVDQQEEYTALRECITLGIPTICLIDTNC 191 (231)
T ss_dssp CCSEEEESCTTTTHHHHHHHHTTTCCEEECCCSSS
T ss_pred CCCEEEEeCCccccHHHHHHHHhCCCEEEEecCCC
Confidence 599996 55432 2467779999999999866443
No 152
>2qs7_A Uncharacterized protein; putative oxidoreductase of the DSRE/DSRF-like family, struct genomics, joint center for structural genomics; HET: MSE EPE; 2.09A {Sulfolobus solfataricus P2}
Probab=51.07 E-value=21 Score=28.57 Aligned_cols=44 Identities=11% Similarity=0.196 Sum_probs=34.2
Q ss_pred EEEEecC-CCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCC
Q 011765 8 QIAMFPW-LAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPR 51 (478)
Q Consensus 8 ~il~~~~-~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~ 51 (478)
|++|+-+ +..-.+++.+.+|...+..|++|+++.+..-...+.+
T Consensus 9 kl~II~~sg~~d~~~~a~~lA~~Aaa~g~eV~iF~t~~gv~~l~k 53 (144)
T 2qs7_A 9 KLSIIVFSGTIDKLMPVGILTSGAAASGYEVNLFFTFWGLQAITK 53 (144)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHHHHHTTCEEEEEECHHHHHHTBH
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHHHHcCCcEEEEEehHHHHHHhc
Confidence 6666544 4558889999999999999999999988876654443
No 153
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=50.61 E-value=17 Score=33.53 Aligned_cols=35 Identities=14% Similarity=0.204 Sum_probs=28.4
Q ss_pred CCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
.++|||.|+-.+..| ..+|+.|++.||+|+++...
T Consensus 29 ~~~~~I~iIG~G~mG-----~~~a~~l~~~G~~V~~~dr~ 63 (320)
T 4dll_A 29 PYARKITFLGTGSMG-----LPMARRLCEAGYALQVWNRT 63 (320)
T ss_dssp CCCSEEEEECCTTTH-----HHHHHHHHHTTCEEEEECSC
T ss_pred cCCCEEEEECccHHH-----HHHHHHHHhCCCeEEEEcCC
Confidence 346899999887777 67899999999999987543
No 154
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=50.52 E-value=29 Score=19.69 Aligned_cols=29 Identities=10% Similarity=0.195 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHhc
Q 011765 416 NSVAESLRLVLVEEKGQIYRDKAKEMKGLFG 446 (478)
Q Consensus 416 ~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~ 446 (478)
.+|.+.|.+++.. +++....+.+++..+.
T Consensus 4 nQLE~kVEeLl~~--n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 4 XQLEXKVXELLXK--NXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHh--hhhHHHHHHHHHHHHh
Confidence 4688999999974 7889999999998874
No 155
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=50.04 E-value=9.9 Score=34.96 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=37.8
Q ss_pred CCCceeeeeccChhhHHHHHHh----CCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcc
Q 011765 354 HDSVGGFLTHAGWSSVVEALQF----GMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVE 428 (478)
Q Consensus 354 ~~~~~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~ 428 (478)
.+++ +|+-||-||+.+++.. ++|+++++... +|.. .+ +.++++.++++.++++
T Consensus 75 ~~d~--vi~~GGDGT~l~a~~~~~~~~~pvlgi~~G~-------------~gfl---~~----~~~~~~~~~~~~i~~g 131 (307)
T 1u0t_A 75 GCEL--VLVLGGDGTFLRAAELARNASIPVLGVNLGR-------------IGFL---AE----AEAEAIDAVLEHVVAQ 131 (307)
T ss_dssp -CCC--EEEEECHHHHHHHHHHHHHHTCCEEEEECSS-------------CCSS---CS----EEGGGHHHHHHHHHHT
T ss_pred CCCE--EEEEeCCHHHHHHHHHhccCCCCEEEEeCCC-------------CccC---cc----cCHHHHHHHHHHHHcC
Confidence 4455 9999999999999764 89999987531 1211 12 4667888888888873
No 156
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=50.02 E-value=29 Score=19.60 Aligned_cols=29 Identities=10% Similarity=0.176 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHhc
Q 011765 416 NSVAESLRLVLVEEKGQIYRDKAKEMKGLFG 446 (478)
Q Consensus 416 ~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~ 446 (478)
.+|++.|++++.. +.+....+.+++..+.
T Consensus 3 nQLEdKvEeLl~~--~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 3 KXIEXKLXEIXSK--XYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHH--hhHHHHHHHHHHHHHc
Confidence 4688999999974 7888999999988764
No 157
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=50.00 E-value=27 Score=26.51 Aligned_cols=65 Identities=17% Similarity=0.128 Sum_probs=45.7
Q ss_pred hcCCCceeeeeccChhh---------HHHHHHhCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHH
Q 011765 352 LAHDSVGGFLTHAGWSS---------VVEALQFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESL 422 (478)
Q Consensus 352 L~~~~~~~~ItHgG~~s---------~~eal~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i 422 (478)
+..+++ +|.-+|..| +..|...|+|+|++=.++.+. .-..+++.+.-+.- -+.+.|.++|
T Consensus 36 I~~~~~--vIvL~G~~t~~s~wv~~EI~~A~~~gkpIigV~~~g~~~-~P~~l~~~a~~iV~--------Wn~~~I~~aI 104 (111)
T 1eiw_A 36 PEDADA--VIVLAGLWGTRRDEILGAVDLARKSSKPIITVRPYGLEN-VPPELEAVSSEVVG--------WNPHCIRDAL 104 (111)
T ss_dssp SSSCSE--EEEEGGGTTTSHHHHHHHHHHHTTTTCCEEEECCSSSSC-CCTTHHHHCSEEEC--------SCHHHHHHHH
T ss_pred cccCCE--EEEEeCCCcCCChHHHHHHHHHHHcCCCEEEEEcCCCCc-CCHHHHhhCceecc--------CCHHHHHHHH
Confidence 445666 999999887 677889999999988777551 11224444433332 6889999999
Q ss_pred HHHhc
Q 011765 423 RLVLV 427 (478)
Q Consensus 423 ~~ll~ 427 (478)
+..++
T Consensus 105 ~~~~~ 109 (111)
T 1eiw_A 105 EDALD 109 (111)
T ss_dssp HHHHC
T ss_pred HhccC
Confidence 88765
No 158
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=49.99 E-value=22 Score=26.78 Aligned_cols=44 Identities=9% Similarity=0.045 Sum_probs=31.7
Q ss_pred cEEEEecCC---CccCHHHHHHHHHHHHhC-CC-eEEEEeCCCccccCC
Q 011765 7 LQIAMFPWL---AFGHMIPWLELAKLIAQK-GH-KIFFISTPRNIDRLP 50 (478)
Q Consensus 7 ~~il~~~~~---~~gH~~p~l~La~~L~~r-Gh-~Vt~~~~~~~~~~~~ 50 (478)
+|++|+-.. +.......+.+|..+.+. || +|+++....-.....
T Consensus 2 ~k~~ii~~~~p~~~~~~~~al~~a~~~~~~~g~~~v~vff~~dgV~~~~ 50 (117)
T 1jx7_A 2 QKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMSDAVTAGL 50 (117)
T ss_dssp CEEEEEECCCTTTCSHHHHHHHHHHHHHHHCTTCEEEEEECGGGGGGGB
T ss_pred cEEEEEEcCCCCCcHHHHHHHHHHHHHHhcCCCccEEEEEEchHHHHHh
Confidence 366654333 335567789999999999 99 999888877765544
No 159
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=49.52 E-value=7.1 Score=33.23 Aligned_cols=45 Identities=9% Similarity=-0.065 Sum_probs=36.7
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPR 51 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~ 51 (478)
+.||++.-.++.|=++ ...+.+.|.++|++|.++.++...+++..
T Consensus 8 ~k~IllgvTGs~aa~k-~~~l~~~L~~~g~~V~vv~T~~A~~fi~~ 52 (194)
T 1p3y_1 8 DKKLLIGICGSISSVG-ISSYLLYFKSFFKEIRVVMTKTAEDLIPA 52 (194)
T ss_dssp GCEEEEEECSCGGGGG-THHHHHHHTTTSSEEEEEECHHHHHHSCH
T ss_pred CCEEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEEchhHHHHHHH
Confidence 4588887777776665 78999999999999999999887776654
No 160
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=49.51 E-value=22 Score=31.26 Aligned_cols=22 Identities=9% Similarity=0.276 Sum_probs=17.6
Q ss_pred hhhhHHHHHHHhhcCCCEEEEc
Q 011765 96 DCLEEPMAKLLQSLAPDWLLFD 117 (478)
Q Consensus 96 ~~~~~~l~~ll~~~~pD~vI~D 117 (478)
..+...+.+++++.+||+|++-
T Consensus 83 ~~~~~~l~~~ir~~~PdvV~t~ 104 (242)
T 2ixd_A 83 EEYIREIVKVIRTYKPKLVFAP 104 (242)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEC
Confidence 3456688888999999999974
No 161
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=49.05 E-value=1.1e+02 Score=27.95 Aligned_cols=34 Identities=15% Similarity=0.141 Sum_probs=20.7
Q ss_pred CCccEEEEecCCCccCHHHHHHHHHHHHhCC--CeEEEEe
Q 011765 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQKG--HKIFFIS 41 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rG--h~Vt~~~ 41 (478)
.++|+||+.. +.|.+- ..|+++|.++| ++|+...
T Consensus 22 ~~~~~vlVtG--atG~iG--~~l~~~L~~~g~~~~v~~~~ 57 (346)
T 4egb_A 22 SNAMNILVTG--GAGFIG--SNFVHYMLQSYETYKIINFD 57 (346)
T ss_dssp --CEEEEEET--TTSHHH--HHHHHHHHHHCTTEEEEEEE
T ss_pred cCCCeEEEEC--CccHHH--HHHHHHHHhhCCCcEEEEEe
Confidence 3457877764 334332 47899999999 5555544
No 162
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=48.22 E-value=20 Score=31.85 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=30.2
Q ss_pred CccEEEEecCC--CccCHHHHHHHHHHHHhCCCeEEEEe
Q 011765 5 SKLQIAMFPWL--AFGHMIPWLELAKLIAQKGHKIFFIS 41 (478)
Q Consensus 5 ~~~~il~~~~~--~~gH~~p~l~La~~L~~rGh~Vt~~~ 41 (478)
++|+.+|++.. ..|=..-.+.|++.|+++|++|.++=
T Consensus 24 ~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fK 62 (251)
T 3fgn_A 24 SHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCK 62 (251)
T ss_dssp SSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 46777766444 45999999999999999999999863
No 163
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=47.80 E-value=45 Score=23.16 Aligned_cols=48 Identities=17% Similarity=0.210 Sum_probs=34.7
Q ss_pred hCCcEeccccccchhhHHHH---HhhcCeEEEeeccCCCCcccHHHHHHHHHHHhc
Q 011765 375 FGMPLIVLTCYADQGLNAKL---LEEKQIVELIPRDEGDGFFTRNSVAESLRLVLV 427 (478)
Q Consensus 375 ~GvP~l~~P~~~DQ~~na~~---v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~ 427 (478)
.|+|++++--...|.+.-.. ..+.|+...+-+.. ++++|.+.+++.|.
T Consensus 50 ngkplvvfvngasqndvnefqneakkegvsydvlkst-----dpeeltqrvreflk 100 (112)
T 2lnd_A 50 NGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKST-----DPEELTQRVREFLK 100 (112)
T ss_dssp CCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECC-----CHHHHHHHHHHHHH
T ss_pred cCCeEEEEecCcccccHHHHHHHHHhcCcchhhhccC-----CHHHHHHHHHHHHH
Confidence 57888887777777554433 33447777776664 89999999999886
No 164
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=47.57 E-value=13 Score=34.12 Aligned_cols=42 Identities=19% Similarity=0.282 Sum_probs=32.0
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLP 53 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g 53 (478)
+|||+++-.++.|- .+|..|.+.||+|+++.... .+.+.+.|
T Consensus 2 ~mkI~IiGaGaiG~-----~~a~~L~~~g~~V~~~~r~~-~~~i~~~g 43 (312)
T 3hn2_A 2 SLRIAIVGAGALGL-----YYGALLQRSGEDVHFLLRRD-YEAIAGNG 43 (312)
T ss_dssp --CEEEECCSTTHH-----HHHHHHHHTSCCEEEECSTT-HHHHHHTC
T ss_pred CCEEEEECcCHHHH-----HHHHHHHHCCCeEEEEEcCc-HHHHHhCC
Confidence 37999998888884 46889999999999998776 35555555
No 165
>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} SCOP: c.56.4.0
Probab=47.53 E-value=16 Score=31.63 Aligned_cols=29 Identities=14% Similarity=0.289 Sum_probs=21.0
Q ss_pred CCccEEEEecCCCcc--CHHHHHHHHHHHHh
Q 011765 4 NSKLQIAMFPWLAFG--HMIPWLELAKLIAQ 32 (478)
Q Consensus 4 ~~~~~il~~~~~~~g--H~~p~l~La~~L~~ 32 (478)
+++||||+..|.-.| -.||...++++|..
T Consensus 1 ~~~m~VLvTGF~PF~~~~~NPS~~~v~~L~~ 31 (215)
T 3giu_A 1 SNAMHILVTGFAPFDNQNINPSWEAVTQLED 31 (215)
T ss_dssp ---CEEEEEEECCCTTCSCCHHHHHHHHSCS
T ss_pred CCCcEEEEEecCCCCCCCCChHHHHHHHhcc
Confidence 468999998666443 57999999999985
No 166
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=47.19 E-value=33 Score=19.43 Aligned_cols=29 Identities=10% Similarity=0.175 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHhc
Q 011765 416 NSVAESLRLVLVEEKGQIYRDKAKEMKGLFG 446 (478)
Q Consensus 416 ~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~ 446 (478)
.+|.+.|.+++.. +.+....+.+++..+.
T Consensus 4 nQLEdKVEeLl~~--~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 4 XQIEXKLEXILSX--LYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh--hhHHHHHHHHHHHHHh
Confidence 4788999999974 6788999999988764
No 167
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=47.09 E-value=30 Score=19.56 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHhc
Q 011765 416 NSVAESLRLVLVEEKGQIYRDKAKEMKGLFG 446 (478)
Q Consensus 416 ~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~ 446 (478)
.+|++.|.+++.. |......+.++++.+.
T Consensus 3 ~QLE~kVEeLl~~--n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 3 AQLEAKVEELLSK--NWNLENEVARLKKLVG 31 (33)
T ss_dssp CHHHHHHHHHHHH--HHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHH--hHHHHHHHHHHHHHhh
Confidence 3688899999974 7889999999998864
No 168
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=47.08 E-value=17 Score=33.43 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=28.3
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRN 45 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~ 45 (478)
+|||+++..+ -...+++++.++||+|.++.....
T Consensus 2 ~m~Ililg~g------~~~~l~~a~~~~G~~v~~~~~~~~ 35 (334)
T 2r85_A 2 KVRIATYASH------SALQILKGAKDEGFETIAFGSSKV 35 (334)
T ss_dssp CSEEEEESST------THHHHHHHHHHTTCCEEEESCGGG
T ss_pred ceEEEEECCh------hHHHHHHHHHhCCCEEEEEECCCC
Confidence 5899998876 467899999999999999887643
No 169
>2p90_A Hypothetical protein CGL1923; structural genomics, PSI-2, MCSG structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} SCOP: c.56.8.1
Probab=46.55 E-value=1.2e+02 Score=27.82 Aligned_cols=169 Identities=12% Similarity=-0.002 Sum_probs=69.7
Q ss_pred CceEEEEeCcccCCC-HHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCC
Q 011765 277 GSVVYVAFGSEAKPS-QEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHD 355 (478)
Q Consensus 277 ~~~v~vs~Gs~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~ 355 (478)
+++++++ |...... .++..++++-+++.+++-++.+++-. ...|-. ++..+... ....+++...
T Consensus 102 ~~~lll~-gpeP~~~w~~f~~~vl~~a~~~gV~~vv~Lggl~-------~~~pht-----rp~~V~~~--at~~~l~~~~ 166 (319)
T 2p90_A 102 KPFLMLS-GPEPDLRWGDFSNAVVDLVEKFGVENTICLYAAP-------MTVPHT-----RPTVVTAH--GNSTDRLKDQ 166 (319)
T ss_dssp CEEEEEE-EECCSBCHHHHHHHHHHHHHHTTCCEEEEEEEEE-------ESCCTT-----SCCCEEEE--ESSGGGCSSC
T ss_pred CeEEEEE-CCCChHHHHHHHHHHHHHHHHcCCCEEEEEeCcc-------CCCCCC-----CCCCeEEE--eCCHHHHhhh
Confidence 4466655 5444333 35556677777899999887776521 111210 11122221 1222222211
Q ss_pred Cc--eeeeeccChhhHH--HHHHhCCcEecccc----cc---chhhHHHHHh-hc--CeEEEeeccCCCCcc--cHHHHH
Q 011765 356 SV--GGFLTHAGWSSVV--EALQFGMPLIVLTC----YA---DQGLNAKLLE-EK--QIVELIPRDEGDGFF--TRNSVA 419 (478)
Q Consensus 356 ~~--~~~ItHgG~~s~~--eal~~GvP~l~~P~----~~---DQ~~na~~v~-~~--g~G~~l~~~~~~~~~--~~~~l~ 419 (478)
.. +-..--||..++. ++...|.|.+++=. +- +.+.=|..+- .+ =+|+.++..+ + .+++++
T Consensus 167 ~~~~~~~~ipggi~glL~~~~~~~Gi~a~~l~~~vphYl~~~pdP~AA~~lL~~l~~l~gl~id~~~----L~e~A~~~e 242 (319)
T 2p90_A 167 VSLDTRMTVPGSASLMLEKLLKDKGKNVSGYTVHVPHYVSASPYPAATLKLLQSIADSADLNLPLLA----LERDAEKVH 242 (319)
T ss_dssp CCCCCCEEECCCHHHHHHHHHHHTTCCEEEEEEEEEGGGTTSCCHHHHHHHHHHHHHHHTCCCCCHH----HHHHHHHHH
T ss_pred hccccCcEEeccHHHHHHHHHHHCCCCEEEEEEecCcccCCCCCHHHHHHHHHHHHHHHCCCCCHHH----HHHHHHHHH
Confidence 11 0011235666554 45689999988742 22 3333333332 22 1244444433 2 446677
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHH---hc----------------ccCChHHHHHHHHHHHHhcc
Q 011765 420 ESLRLVLVEEKGQIYRDKAKEMKGL---FG----------------DKGRHDRYVDNFLNYLKNHR 466 (478)
Q Consensus 420 ~~i~~ll~~~~~~~~~~~a~~~~~~---~~----------------~~~~~~~~~~~i~~~~~~~~ 466 (478)
+.|+++.+. +++..+-++.+-+. .. ..+..+.-+.+|++++.+..
T Consensus 243 ~~i~~l~~~--~~e~~~~V~~LE~~~D~~~~~~~~~~~~~~~~~~~~~ps~d~i~~efE~fL~~~~ 306 (319)
T 2p90_A 243 RQLMEQTEE--SSEIQRVVGALEQQYDSELERYRNRHPQAVMPGESELPSGDEIGAEFEKFLADLD 306 (319)
T ss_dssp HHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHCC--------------------------------
T ss_pred HHHHHHHHh--hHHHHHHHHHHHhhhhhhhhhhcccccccccccccCCCCHHHHHHHHHHHHHhcC
Confidence 778877763 44544433232221 11 12234556677888886553
No 170
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=45.89 E-value=29 Score=30.97 Aligned_cols=42 Identities=14% Similarity=0.128 Sum_probs=32.1
Q ss_pred hhHHHHHHHhhcCCCEEEEcCCcc------cHHHHHHHhCCCeEEEec
Q 011765 98 LEEPMAKLLQSLAPDWLLFDFAAY------WLPARARELGIPSGFFSI 139 (478)
Q Consensus 98 ~~~~l~~ll~~~~pD~vI~D~~~~------~~~~~A~~lgIP~i~~~~ 139 (478)
....+.+++++.+||+|++..... .+..+|..||+|.+...+
T Consensus 100 ~a~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~~~vt~v~ 147 (264)
T 1o97_C 100 VGRILTEVIKKEAPDMVFAGVQSSDQAYASTGISVASYLNWPHAAVVA 147 (264)
T ss_dssp HHHHHHHHHHHHCCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCCCcccceE
Confidence 344566667777999999886543 477899999999998755
No 171
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=45.69 E-value=28 Score=27.54 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=28.7
Q ss_pred cEEEEecCCCccCHHHHH-HHHHHHHhCCCeEEEEeCCCc
Q 011765 7 LQIAMFPWLAFGHMIPWL-ELAKLIAQKGHKIFFISTPRN 45 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l-~La~~L~~rGh~Vt~~~~~~~ 45 (478)
|||+++-...+|+..-+. .|++.|.++|++|.++.....
T Consensus 2 ~ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~ 41 (148)
T 3f6r_A 2 SKVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAADA 41 (148)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTTB
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehhhC
Confidence 678777666788876544 467778888999998876543
No 172
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=45.65 E-value=1.2e+02 Score=25.48 Aligned_cols=96 Identities=13% Similarity=0.071 Sum_probs=53.5
Q ss_pred hhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEe
Q 011765 264 WRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYT 343 (478)
Q Consensus 264 ~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~ 343 (478)
-.++-++|...+ ..+||-|. .-......++....+-+.+-++.... ..... ..+.+.
T Consensus 47 A~~lg~~LA~~G---~~vVsGg~-----~GiM~aa~~gAl~~GG~~iGVlP~e~-----~~~~~----------~~~~~~ 103 (195)
T 1rcu_A 47 CLELGRTLAKKG---YLVFNGGR-----DGVMELVSQGVREAGGTVVGILPDEE-----AGNPY----------LSVAVK 103 (195)
T ss_dssp HHHHHHHHHHTT---CEEEECCS-----SHHHHHHHHHHHHTTCCEEEEESTTC-----CCCTT----------CSEEEE
T ss_pred HHHHHHHHHHCC---CEEEeCCH-----HHHHHHHHHHHHHcCCcEEEEeCCcc-----cCCCC----------cceeee
Confidence 345666676543 66666443 23344455555556667777764311 11111 123332
Q ss_pred --ccCC-hhhhhc-CCCceeeeeccChhhHHH---HHHhCCcEeccc
Q 011765 344 --SWAP-QLAILA-HDSVGGFLTHAGWSSVVE---ALQFGMPLIVLT 383 (478)
Q Consensus 344 --~~vp-q~~vL~-~~~~~~~ItHgG~~s~~e---al~~GvP~l~~P 383 (478)
...+ ...++. .++ ..++-=||.||+-| ++.+|+|+++++
T Consensus 104 ~~~~f~~Rk~~m~~~sd-a~IvlpGG~GTL~E~~eal~~~kPV~lln 149 (195)
T 1rcu_A 104 TGLDFQMRSFVLLRNAD-VVVSIGGEIGTAIEILGAYALGKPVILLR 149 (195)
T ss_dssp CCCCHHHHHHHHHTTCS-EEEEESCCHHHHHHHHHHHHTTCCEEEET
T ss_pred cCCCHHHHHHHHHHhCC-EEEEecCCCcHHHHHHHHHhcCCCEEEEC
Confidence 2334 344443 444 35677899998766 578999999996
No 173
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=45.53 E-value=23 Score=31.61 Aligned_cols=44 Identities=11% Similarity=0.089 Sum_probs=36.8
Q ss_pred CccEEEEecCC---CccCHHHHHHHHHHHHhCCCeEEEEeCCCcccc
Q 011765 5 SKLQIAMFPWL---AFGHMIPWLELAKLIAQKGHKIFFISTPRNIDR 48 (478)
Q Consensus 5 ~~~~il~~~~~---~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 48 (478)
+.||.+|++.+ +.|--.-..+|+.-|..||++||..=-+++...
T Consensus 21 ~~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~~K~DPYlNv 67 (295)
T 2vo1_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINI 67 (295)
T ss_dssp CCCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEECSSCC
T ss_pred ccceEEEEcCCcccccccHHHHHHHHHHHHHCCCcceeeecccceec
Confidence 36899999876 558888899999999999999999887776553
No 174
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=45.06 E-value=30 Score=30.07 Aligned_cols=29 Identities=7% Similarity=0.248 Sum_probs=23.6
Q ss_pred ceeeeeccChhhHHHHHHhCCcEecccccc
Q 011765 357 VGGFLTHAGWSSVVEALQFGMPLIVLTCYA 386 (478)
Q Consensus 357 ~~~~ItHgG~~s~~eal~~GvP~l~~P~~~ 386 (478)
++.+|+.||.......- ..+|+|-++..+
T Consensus 64 ~dVIISRGgta~~Lr~~-~~iPVV~I~vs~ 92 (225)
T 2pju_A 64 CDAIIAAGSNGAYLKSR-LSVPVILIKPSG 92 (225)
T ss_dssp CSEEEEEHHHHHHHHTT-CSSCEEEECCCH
T ss_pred CeEEEeCChHHHHHHhh-CCCCEEEecCCH
Confidence 33499999999888875 689999999753
No 175
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=45.00 E-value=32 Score=19.57 Aligned_cols=29 Identities=21% Similarity=0.437 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHhc
Q 011765 416 NSVAESLRLVLVEEKGQIYRDKAKEMKGLFG 446 (478)
Q Consensus 416 ~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~ 446 (478)
.+|.+.|.++|.. +..+...+.++++.+.
T Consensus 4 nQLEdKvEeLl~~--~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 4 KQIEDKLEEILSK--GHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHc--cHHHHHHHHHHHHHhc
Confidence 4688999999974 6788999999988764
No 176
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=44.95 E-value=28 Score=29.61 Aligned_cols=42 Identities=12% Similarity=0.159 Sum_probs=28.1
Q ss_pred CCCCCccEEEEecCCCccCHHHHHH-HHHHHHhCCCeEEEEeC
Q 011765 1 MADNSKLQIAMFPWLAFGHMIPWLE-LAKLIAQKGHKIFFIST 42 (478)
Q Consensus 1 ~~~~~~~~il~~~~~~~gH~~p~l~-La~~L~~rGh~Vt~~~~ 42 (478)
|.-+++|||+++-....|+..-+.. +++.|.+.|++|.++.-
T Consensus 1 ~~~~~mmkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l 43 (211)
T 1ydg_A 1 MSLTAPVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKV 43 (211)
T ss_dssp ----CCCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCcCCCCeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEec
Confidence 4445678999987777888766554 46677778998887653
No 177
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=44.79 E-value=12 Score=34.49 Aligned_cols=42 Identities=21% Similarity=0.247 Sum_probs=32.1
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLP 53 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g 53 (478)
+|||+++-.++.|- .+|..|.+.||+|+++..... +.+.+.|
T Consensus 2 ~mkI~IiGaGaiG~-----~~a~~L~~~g~~V~~~~r~~~-~~i~~~G 43 (320)
T 3i83_A 2 SLNILVIGTGAIGS-----FYGALLAKTGHCVSVVSRSDY-ETVKAKG 43 (320)
T ss_dssp -CEEEEESCCHHHH-----HHHHHHHHTTCEEEEECSTTH-HHHHHHC
T ss_pred CCEEEEECcCHHHH-----HHHHHHHhCCCeEEEEeCChH-HHHHhCC
Confidence 37999998887774 578889999999999988763 5455545
No 178
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=44.65 E-value=38 Score=19.30 Aligned_cols=29 Identities=14% Similarity=0.211 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHhc
Q 011765 416 NSVAESLRLVLVEEKGQIYRDKAKEMKGLFG 446 (478)
Q Consensus 416 ~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~ 446 (478)
.+|++.+++++.. +..+...+.++++.+.
T Consensus 4 ~QLEdKVEeLl~~--n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 4 KQIEDKGEEILSK--LYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHh--hHHHHHHHHHHHHHHc
Confidence 4688999999974 7888999999988874
No 179
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=44.29 E-value=75 Score=26.76 Aligned_cols=139 Identities=12% Similarity=0.004 Sum_probs=73.1
Q ss_pred CceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEecc-----CChhhh
Q 011765 277 GSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSW-----APQLAI 351 (478)
Q Consensus 277 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~-----vpq~~v 351 (478)
+.+++.-.|++.... ...+++.|.+.+..+-.++.... ..-+...-.+.. ..+++..-| +.+..+
T Consensus 9 k~IllgvTGs~aa~k---~~~l~~~L~~~g~~V~vv~T~~A------~~fi~~~~~~~l-~~~v~~~~~~~~~~~~hi~l 78 (194)
T 1p3y_1 9 KKLLIGICGSISSVG---ISSYLLYFKSFFKEIRVVMTKTA------EDLIPAHTVSYF-CDHVYSEHGENGKRHSHVEI 78 (194)
T ss_dssp CEEEEEECSCGGGGG---THHHHHHHTTTSSEEEEEECHHH------HHHSCHHHHGGG-SSEEECTTCSSSCCCCHHHH
T ss_pred CEEEEEEECHHHHHH---HHHHHHHHHHCCCEEEEEEchhH------HHHHHHHHHHHh-cCCEeccccccCCCcCcccc
Confidence 346666667665432 34455666666776655554321 011111111111 123322112 233444
Q ss_pred hcCCCceeeeeccChhhHHH-------------HHHhCCcEecccccc----ch---hhHHHHHhhcCeEEEeeccCC--
Q 011765 352 LAHDSVGGFLTHAGWSSVVE-------------ALQFGMPLIVLTCYA----DQ---GLNAKLLEEKQIVELIPRDEG-- 409 (478)
Q Consensus 352 L~~~~~~~~ItHgG~~s~~e-------------al~~GvP~l~~P~~~----DQ---~~na~~v~~~g~G~~l~~~~~-- 409 (478)
...+++ .+|.=|-+||+.. ++..++|++++|-.. .- ..|-.++.+.|+ ..++...+
T Consensus 79 ~~~aD~-~vIaPaTanTlAKiA~GiaDnLlt~~a~a~~~pvvl~Pamn~~m~~~p~~~~Nl~~L~~~G~-~iv~p~~g~~ 156 (194)
T 1p3y_1 79 GRWADI-YCIIPATANILGQTANGVAMNLVATTVLAHPHNTIFFPNMNDLMWNKTVVSRNIEQLRKDGH-IVIEPVEIMA 156 (194)
T ss_dssp HHHCSE-EEEEEECHHHHHHHHTTCCSSHHHHHHHHSSSCCEEEECCCHHHHTCHHHHHHHHHHHHHTC-EECCCBCCC-
T ss_pred cccCCE-EEEeCCCHHHHHHHHhhccCCHHHHHHHHcCCCEEEEECCChhhcCCHHHHHHHHHHHHCCC-EEECCCCCcc
Confidence 344554 3566566665543 256789999999532 22 457777888887 33333322
Q ss_pred ---------C--CcccHHHHHHHHHHHhc
Q 011765 410 ---------D--GFFTRNSVAESLRLVLV 427 (478)
Q Consensus 410 ---------~--~~~~~~~l~~~i~~ll~ 427 (478)
. ...+.++|.+.+.+.+.
T Consensus 157 f~lacg~~g~~g~~~~~~~iv~~v~~~l~ 185 (194)
T 1p3y_1 157 FEIATGTRKPNRGLITPDKALLAIEKGFK 185 (194)
T ss_dssp -----------CBCCCHHHHHHHHHHHCC
T ss_pred cccccCCcCcCCCCCCHHHHHHHHHHHhc
Confidence 1 22578888888888887
No 180
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=43.52 E-value=1.2e+02 Score=24.10 Aligned_cols=38 Identities=13% Similarity=0.029 Sum_probs=28.5
Q ss_pred cEEEEecCCCcc---CHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 7 LQIAMFPWLAFG---HMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 7 ~~il~~~~~~~g---H~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
..++++++++.+ ...-+..++++|.+.+.++++++...
T Consensus 21 ~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~~~~~~~~~g~~ 61 (170)
T 2o6l_A 21 NGVVVFSLGSMVSNMTEERANVIASALAQIPQKVLWRFDGN 61 (170)
T ss_dssp TCEEEEECCSCCTTCCHHHHHHHHHHHTTSSSEEEEECCSS
T ss_pred CCEEEEECCCCcccCCHHHHHHHHHHHHhCCCeEEEEECCc
Confidence 356778888876 55567788899987788888887654
No 181
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=43.34 E-value=79 Score=30.52 Aligned_cols=36 Identities=11% Similarity=-0.021 Sum_probs=23.8
Q ss_pred HHHHHHhhcCCCEEEEcCCccc---HHHHHHHhCCCeEE
Q 011765 101 PMAKLLQSLAPDWLLFDFAAYW---LPARARELGIPSGF 136 (478)
Q Consensus 101 ~l~~ll~~~~pD~vI~D~~~~~---~~~~A~~lgIP~i~ 136 (478)
.+.++.++.++|+||...-.+. .....+.+|+|++.
T Consensus 74 ~l~~~a~~~~id~vv~g~E~~l~~~~~~~l~~~Gi~~~G 112 (442)
T 3lp8_A 74 EVIQVCKKEKIELVVIGPETPLMNGLSDALTEEGILVFG 112 (442)
T ss_dssp HHHHHHHHTTCCEEEECSHHHHHTTHHHHHHHTTCEEES
T ss_pred HHHHHHHHhCCCEEEECCcHHHHHHHHHHHHhcCCcEec
Confidence 4556667789999998643321 23456778998874
No 182
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=43.33 E-value=71 Score=27.43 Aligned_cols=108 Identities=10% Similarity=-0.013 Sum_probs=0.0
Q ss_pred CCCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc----cccCCCCCCCCCCCeEEEEecCCCCCCCCCCcc
Q 011765 3 DNSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRN----IDRLPRLPQNLASMIQFVKISLPHVDNLRENAE 78 (478)
Q Consensus 3 ~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~----~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~ 78 (478)
+.+++||+++..+.-+-+..++.-.+.= .+++|..+.+... .+..++.| +.+..++- ..+++.
T Consensus 2 ~~~~~riavl~SG~Gsnl~all~~~~~~--~~~eI~~Vis~~~~a~~~~~A~~~g------Ip~~~~~~---~~~~~r-- 68 (215)
T 3tqr_A 2 NREPLPIVVLISGNGTNLQAIIGAIQKG--LAIEIRAVISNRADAYGLKRAQQAD------IPTHIIPH---EEFPSR-- 68 (215)
T ss_dssp --CCEEEEEEESSCCHHHHHHHHHHHTT--CSEEEEEEEESCTTCHHHHHHHHTT------CCEEECCG---GGSSSH--
T ss_pred CCCCcEEEEEEeCCcHHHHHHHHHHHcC--CCCEEEEEEeCCcchHHHHHHHHcC------CCEEEeCc---cccCch--
Q ss_pred ccCCCChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcc-cHHHHHHHhCCCeEEEecc
Q 011765 79 ATIDLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAY-WLPARARELGIPSGFFSIF 140 (478)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~-~~~~~A~~lgIP~i~~~~~ 140 (478)
....+.+.+.+++.+||+||.-.+.. ....+-....-.++-++++
T Consensus 69 -----------------~~~d~~~~~~l~~~~~Dliv~agy~~il~~~~l~~~~~~~iNiHpS 114 (215)
T 3tqr_A 69 -----------------TDFESTLQKTIDHYDPKLIVLAGFMRKLGKAFVSHYSGRMINIHPS 114 (215)
T ss_dssp -----------------HHHHHHHHHHHHTTCCSEEEESSCCSCCCHHHHHHTTTSEEEEESS
T ss_pred -----------------hHhHHHHHHHHHhcCCCEEEEccchhhCCHHHHhhccCCeEEeCcc
No 183
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=42.93 E-value=1.5e+02 Score=26.89 Aligned_cols=106 Identities=10% Similarity=0.051 Sum_probs=0.0
Q ss_pred CCCccEEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeC--CCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCcc
Q 011765 3 DNSKLQIAMFPWLAFGHMIPWLELAKLIAQK--GHKIFFIST--PRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAE 78 (478)
Q Consensus 3 ~~~~~~il~~~~~~~gH~~p~l~La~~L~~r--Gh~Vt~~~~--~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~ 78 (478)
...++||+++..+. || -+.+|..+-... +.+|..+.+ +...+..++.| +.+..+|....+.
T Consensus 102 ~~~~~ri~vl~Sg~-g~--nl~~ll~~~~~g~l~~~I~~Visn~~~~~~~A~~~g------Ip~~~~~~~~~~r------ 166 (302)
T 3o1l_A 102 SAQKKRVVLMASRE-SH--CLADLLHRWHSDELDCDIACVISNHQDLRSMVEWHD------IPYYHVPVDPKDK------ 166 (302)
T ss_dssp TTSCCEEEEEECSC-CH--HHHHHHHHHHTTCSCSEEEEEEESSSTTHHHHHTTT------CCEEECCCCSSCC------
T ss_pred cCCCcEEEEEEeCC-ch--hHHHHHHHHHCCCCCcEEEEEEECcHHHHHHHHHcC------CCEEEcCCCcCCH------
Q ss_pred ccCCCChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcc-cHHHHHHHhCCCeEEEecc
Q 011765 79 ATIDLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAY-WLPARARELGIPSGFFSIF 140 (478)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~-~~~~~A~~lgIP~i~~~~~ 140 (478)
....+.+.+++++.+||+||.=.+.- -...+-+.+.-.+|-++++
T Consensus 167 -----------------~~~~~~~~~~l~~~~~DliVlagym~IL~~~~l~~~~~~~INiHpS 212 (302)
T 3o1l_A 167 -----------------EPAFAEVSRLVGHHQADVVVLARYMQILPPQLCREYAHQVINIHHS 212 (302)
T ss_dssp -----------------HHHHHHHHHHHHHTTCSEEEESSCCSCCCTTHHHHTTTCEEEEESS
T ss_pred -----------------HHHHHHHHHHHHHhCCCEEEHhHhhhhcCHHHHhhhhCCeEEeCcc
No 184
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=42.69 E-value=29 Score=27.78 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=26.1
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
.++|+++..+..| ..+++.|.++|++|+++....
T Consensus 19 ~~~v~IiG~G~iG-----~~la~~L~~~g~~V~vid~~~ 52 (155)
T 2g1u_A 19 SKYIVIFGCGRLG-----SLIANLASSSGHSVVVVDKNE 52 (155)
T ss_dssp CCEEEEECCSHHH-----HHHHHHHHHTTCEEEEEESCG
T ss_pred CCcEEEECCCHHH-----HHHHHHHHhCCCeEEEEECCH
Confidence 5799998654334 568999999999999987543
No 185
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=42.56 E-value=46 Score=25.48 Aligned_cols=39 Identities=13% Similarity=0.044 Sum_probs=25.5
Q ss_pred HHHHHhhcCCCEEEEcCCcc--cHHHHHHHh-------CCCeEEEecc
Q 011765 102 MAKLLQSLAPDWLLFDFAAY--WLPARAREL-------GIPSGFFSIF 140 (478)
Q Consensus 102 l~~ll~~~~pD~vI~D~~~~--~~~~~A~~l-------gIP~i~~~~~ 140 (478)
..+.+.+.+||+||.|...+ .+..+.+.+ .+|+|.++..
T Consensus 40 al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~t~~ 87 (136)
T 3t6k_A 40 ALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILMLTAQ 87 (136)
T ss_dssp HHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEEECT
T ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEEecC
Confidence 33455677899999997655 344444332 5888877654
No 186
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=42.55 E-value=1.5e+02 Score=24.96 Aligned_cols=146 Identities=14% Similarity=0.093 Sum_probs=76.4
Q ss_pred CceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhh---hhhcCCCcEEEecc--CChhhh
Q 011765 277 GSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGF---EERTRGRGVVYTSW--APQLAI 351 (478)
Q Consensus 277 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~---~~~~~~~n~~~~~~--vpq~~v 351 (478)
+.+++.-.|+.... +....+++.|.+.+..+..++.......- ......+.+ .+......+.. ++ +++...
T Consensus 8 k~I~lgiTGs~aa~--~k~~~ll~~L~~~g~eV~vv~T~~A~~~i-~~~~~~~~~~~~l~~l~g~~v~~-~~~~~~hi~~ 83 (201)
T 3lqk_A 8 KHVGFGLTGSHCTY--HEVLPQMERLVELGAKVTPFVTHTVQTTD-TKFGESSEWINKIKQITEEPIVD-SMVKAEPFGP 83 (201)
T ss_dssp CEEEEECCSCGGGG--GGTHHHHHHHHHTTCEEEEECSSCSCCTT-CCTTCSCHHHHHHHHHCCSCCBC-SHHHHGGGTT
T ss_pred CEEEEEEEChHHHH--HHHHHHHHHHhhCCCEEEEEEChhHHHHH-HHhhchhHHHHHHHHHhCCCeEe-ecCccccccc
Confidence 44666666765533 13344556666668777666654422100 000001111 11111111111 11 123332
Q ss_pred hcCCCceeeeeccChhhHHH----------------HHHhCCcEecccc----ccchhhHHHHHhhcCeEEEeecc--C-
Q 011765 352 LAHDSVGGFLTHAGWSSVVE----------------ALQFGMPLIVLTC----YADQGLNAKLLEEKQIVELIPRD--E- 408 (478)
Q Consensus 352 L~~~~~~~~ItHgG~~s~~e----------------al~~GvP~l~~P~----~~DQ~~na~~v~~~g~G~~l~~~--~- 408 (478)
-..+++ .+|.=|-+||+.. ++..+.|++++|- .+..+.|..++.+.|+=+.-+.. .
T Consensus 84 s~~aD~-mvIaP~TanTlAkiA~GiaDnLlt~aa~~~Lk~~~plvl~Pamn~~m~~h~~Nm~~L~~~G~~i~~P~~~~~~ 162 (201)
T 3lqk_A 84 KTPLDC-MVIAPMTGNSTSKFANAMTDSPVLMGAKATLRNGKPVVVGISTNDALGLNGINIMRLMATKNIYFIPFGQDNP 162 (201)
T ss_dssp TSCCSE-EEEEEECHHHHHHHHTTCCCSHHHHHHHHHHHTTCCEEEEEEETTTTTTTHHHHHHHHTSTTEEECCEEESCT
T ss_pred ccccCE-EEEccCCHHHHHHHHCcccCcHHHHHHHHHhhcCCCEEEEECCChhHHHhHHHHHHHHHCCCEEECCCCcccc
Confidence 223333 4566565554432 3667999999994 45667799999999976655442 1
Q ss_pred ---CCC-cccHHHHHHHHHHHhc
Q 011765 409 ---GDG-FFTRNSVAESLRLVLV 427 (478)
Q Consensus 409 ---~~~-~~~~~~l~~~i~~ll~ 427 (478)
+.+ ..+.+.|.+.|.++|+
T Consensus 163 ~~~p~s~~a~~~~i~~tv~~al~ 185 (201)
T 3lqk_A 163 QVKPNSLVARMEALPETIEAALR 185 (201)
T ss_dssp TTCTTCEEECGGGHHHHHHHHHT
T ss_pred ccCCCcccCCHHHHHHHHHHHHh
Confidence 011 1345789999999988
No 187
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=42.55 E-value=73 Score=24.83 Aligned_cols=47 Identities=19% Similarity=0.205 Sum_probs=34.4
Q ss_pred hCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhc
Q 011765 375 FGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLV 427 (478)
Q Consensus 375 ~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~ 427 (478)
..+|+|++--..+ ........+.|+--.+.+- ++.++|..+|+.++.
T Consensus 74 ~~~pii~ls~~~~-~~~~~~~~~~g~~~~l~kP-----~~~~~L~~~i~~~~~ 120 (155)
T 1qkk_A 74 PDLPMILVTGHGD-IPMAVQAIQDGAYDFIAKP-----FAADRLVQSARRAEE 120 (155)
T ss_dssp TTSCEEEEECGGG-HHHHHHHHHTTCCEEEESS-----CCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCC-hHHHHHHHhcCCCeEEeCC-----CCHHHHHHHHHHHHH
Confidence 4788888765444 4455566677876666554 699999999999998
No 188
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=42.42 E-value=24 Score=29.95 Aligned_cols=51 Identities=12% Similarity=0.145 Sum_probs=32.9
Q ss_pred CCceeeeeccChhhHHHHHHhCCcEecccccc-chhhHHHHHhhc--CeEEEeec
Q 011765 355 DSVGGFLTHAGWSSVVEALQFGMPLIVLTCYA-DQGLNAKLLEEK--QIVELIPR 406 (478)
Q Consensus 355 ~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~-DQ~~na~~v~~~--g~G~~l~~ 406 (478)
..++.+|+.||........ .++|+|-++..+ |=..--+.+.+. .+|+..-.
T Consensus 50 ~~~dVIISRGgta~~lr~~-~~iPVV~I~~s~~Dil~al~~a~~~~~kIavvg~~ 103 (196)
T 2q5c_A 50 DEVDAIISRGATSDYIKKS-VSIPSISIKVTRFDTMRAVYNAKRFGNELALIAYK 103 (196)
T ss_dssp TTCSEEEEEHHHHHHHHTT-CSSCEEEECCCHHHHHHHHHHHGGGCSEEEEEEES
T ss_pred CCCeEEEECChHHHHHHHh-CCCCEEEEcCCHhHHHHHHHHHHhhCCcEEEEeCc
Confidence 3444599999999888875 689999999754 433333334433 34555443
No 189
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}
Probab=42.42 E-value=18 Score=33.48 Aligned_cols=33 Identities=9% Similarity=0.325 Sum_probs=27.8
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
+|||.|+-.+..| ..+|..|.+.||+|+++...
T Consensus 14 ~~kI~iIG~G~mG-----~ala~~L~~~G~~V~~~~r~ 46 (335)
T 1z82_A 14 EMRFFVLGAGSWG-----TVFAQMLHENGEEVILWARR 46 (335)
T ss_dssp CCEEEEECCSHHH-----HHHHHHHHHTTCEEEEECSS
T ss_pred CCcEEEECcCHHH-----HHHHHHHHhCCCeEEEEeCC
Confidence 6899999887776 57889999999999998654
No 190
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=42.38 E-value=1.3e+02 Score=28.00 Aligned_cols=90 Identities=13% Similarity=0.064 Sum_probs=54.6
Q ss_pred cEEEEecCCCcc----CHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCC
Q 011765 7 LQIAMFPWLAFG----HMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATID 82 (478)
Q Consensus 7 ~~il~~~~~~~g----H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~ 82 (478)
.++++++.++.+ ...-+..++++|.+.+.+|++++.....+.+.... +++.+...
T Consensus 232 ~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~g~~~~~~l~~~~----~~v~~~~~----------------- 290 (398)
T 3oti_A 232 RPEVAITMGTIELQAFGIGAVEPIIAAAGEVDADFVLALGDLDISPLGTLP----RNVRAVGW----------------- 290 (398)
T ss_dssp SCEEEECCTTTHHHHHCGGGHHHHHHHHHTSSSEEEEECTTSCCGGGCSCC----TTEEEESS-----------------
T ss_pred CCEEEEEcCCCccccCcHHHHHHHHHHHHcCCCEEEEEECCcChhhhccCC----CcEEEEcc-----------------
Confidence 456777777763 33457788899998899999988776433332221 33333311
Q ss_pred CChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEE
Q 011765 83 LPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFF 137 (478)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~ 137 (478)
.+ +.+++. ..|++|+..-. ....-|-.+|+|.|.+
T Consensus 291 ~~-----------------~~~ll~--~ad~~v~~~G~-~t~~Eal~~G~P~v~~ 325 (398)
T 3oti_A 291 TP-----------------LHTLLR--TCTAVVHHGGG-GTVMTAIDAGIPQLLA 325 (398)
T ss_dssp CC-----------------HHHHHT--TCSEEEECCCH-HHHHHHHHHTCCEEEC
T ss_pred CC-----------------HHHHHh--hCCEEEECCCH-HHHHHHHHhCCCEEEc
Confidence 00 112232 26999986432 3455677789999986
No 191
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=42.30 E-value=94 Score=29.96 Aligned_cols=32 Identities=16% Similarity=0.015 Sum_probs=23.3
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhC-CCeEEEEeCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQK-GHKIFFISTP 43 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~r-Gh~Vt~~~~~ 43 (478)
|||+++..++ ....+++.|+++ |++++++.+.
T Consensus 25 ~~IlIlG~g~-----r~~al~~~~a~~~g~~~v~~~~~ 57 (452)
T 2qk4_A 25 ARVLIIGSGG-----REHTLAWKLAQSHHVKQVLVAPG 57 (452)
T ss_dssp EEEEEEECSH-----HHHHHHHHHTTCTTEEEEEEEEC
T ss_pred cEEEEECCCH-----HHHHHHHHHHhcCCCCEEEEECC
Confidence 7999987763 356778888765 8887777654
No 192
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=42.06 E-value=37 Score=30.14 Aligned_cols=42 Identities=26% Similarity=0.222 Sum_probs=31.7
Q ss_pred hhHHHHHHHhhcCCCEEEEcCCcc------cHHHHHHHhCCCeEEEec
Q 011765 98 LEEPMAKLLQSLAPDWLLFDFAAY------WLPARARELGIPSGFFSI 139 (478)
Q Consensus 98 ~~~~l~~ll~~~~pD~vI~D~~~~------~~~~~A~~lgIP~i~~~~ 139 (478)
....+.+++++.+||+|++..... .+..+|..||+|.+....
T Consensus 104 ~A~~La~~i~~~~~dlVl~G~~s~d~d~~~v~p~lA~~L~~~~vt~v~ 151 (255)
T 1efv_B 104 VARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFAS 151 (255)
T ss_dssp HHHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEeCcccCCchhhHHHHHHHHhCCCcccceE
Confidence 344556666667899999886543 477899999999998754
No 193
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=41.98 E-value=20 Score=34.13 Aligned_cols=58 Identities=12% Similarity=0.245 Sum_probs=39.8
Q ss_pred hhhhcCCCceeeeeccChhhHHHHHHh----CC-cEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHH
Q 011765 349 LAILAHDSVGGFLTHAGWSSVVEALQF----GM-PLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLR 423 (478)
Q Consensus 349 ~~vL~~~~~~~~ItHgG~~s~~eal~~----Gv-P~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~ 423 (478)
.++-..+++ +|+=||=||+..|+.. ++ |++++... . +|.. .+ ++.+++.++++
T Consensus 109 ~~~~~~~Dl--VIvlGGDGTlL~aa~~~~~~~vpPiLGIN~G-----------~--lGFL---t~----~~~~~~~~al~ 166 (388)
T 3afo_A 109 QDIVNRTDL--LVTLGGDGTILHGVSMFGNTQVPPVLAFALG-----------T--LGFL---SP----FDFKEHKKVFQ 166 (388)
T ss_dssp HHHHHHCSE--EEEEESHHHHHHHHHTTTTSCCCCEEEEECS-----------S--CCSS---CC----EEGGGHHHHHH
T ss_pred hhcccCCCE--EEEEeCcHHHHHHHHHhcccCCCeEEEEECC-----------C--cccC---Cc----CChHHHHHHHH
Confidence 344444566 9999999999999764 57 78887642 0 1211 12 56678888898
Q ss_pred HHhcc
Q 011765 424 LVLVE 428 (478)
Q Consensus 424 ~ll~~ 428 (478)
+++++
T Consensus 167 ~il~g 171 (388)
T 3afo_A 167 EVISS 171 (388)
T ss_dssp HHHTT
T ss_pred HHhcC
Confidence 88884
No 194
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=41.82 E-value=80 Score=28.94 Aligned_cols=40 Identities=23% Similarity=0.427 Sum_probs=27.5
Q ss_pred cEEEEecCCCcc---C--HHHHHHHHHHHHhCCCeEEEEeCCCcc
Q 011765 7 LQIAMFPWLAFG---H--MIPWLELAKLIAQKGHKIFFISTPRNI 46 (478)
Q Consensus 7 ~~il~~~~~~~g---H--~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (478)
..|++.|....+ . ..-+..+++.|.++|++|.++..+...
T Consensus 181 ~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~~~~~vvl~g~~~e~ 225 (348)
T 1psw_A 181 PMIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVLFGSAKDH 225 (348)
T ss_dssp CEEEEECCCTTCGGGSCCHHHHHHHHHHHHHTTCEEEECCCGGGH
T ss_pred cEEEEECCCCccccCCCCHHHHHHHHHHHHHCCCeEEEEeChhhH
Confidence 456666655221 2 336889999999999999987665543
No 195
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=41.76 E-value=45 Score=26.45 Aligned_cols=44 Identities=14% Similarity=0.244 Sum_probs=31.1
Q ss_pred ccEEEEe-cCCCccCHHH--HHHHHHHHHhCCCeE-EEEeCCCccccC
Q 011765 6 KLQIAMF-PWLAFGHMIP--WLELAKLIAQKGHKI-FFISTPRNIDRL 49 (478)
Q Consensus 6 ~~~il~~-~~~~~gH~~p--~l~La~~L~~rGh~V-t~~~~~~~~~~~ 49 (478)
.||++|+ +.+-+|+-.. .+.+|+++.+.||+| .++-..+-....
T Consensus 12 ~~~~~ivv~~~Pyg~~~a~~Al~~A~aala~g~eV~~VFf~~DGV~~a 59 (140)
T 2d1p_A 12 SMRFAIVVTGPAYGTQQASSAFQFAQALIADGHELSSVFFYREGVYNA 59 (140)
T ss_dssp CCEEEEEECSCSSSSSHHHHHHHHHHHHHHTTCEEEEEEECGGGGGGG
T ss_pred ceEEEEEEcCCCCCcHHHHHHHHHHHHHHHCCCccCEEEEechHHHHH
Confidence 5888775 5555555444 577899999999999 877776665443
No 196
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=41.66 E-value=26 Score=29.87 Aligned_cols=34 Identities=18% Similarity=0.322 Sum_probs=24.4
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
|||++.- +.|.+ -..|+++|.++||+|+.++-..
T Consensus 1 MkilVtG--atG~i--G~~l~~~L~~~g~~V~~~~R~~ 34 (224)
T 3h2s_A 1 MKIAVLG--ATGRA--GSAIVAEARRRGHEVLAVVRDP 34 (224)
T ss_dssp CEEEEET--TTSHH--HHHHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEEc--CCCHH--HHHHHHHHHHCCCEEEEEEecc
Confidence 6766653 33333 2678999999999999987553
No 197
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=41.58 E-value=20 Score=32.54 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=26.1
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
+|||+++..+..| ..+|..|.++||+|+++...
T Consensus 3 ~m~i~iiG~G~~G-----~~~a~~l~~~g~~V~~~~r~ 35 (316)
T 2ew2_A 3 AMKIAIAGAGAMG-----SRLGIMLHQGGNDVTLIDQW 35 (316)
T ss_dssp -CEEEEECCSHHH-----HHHHHHHHHTTCEEEEECSC
T ss_pred CCeEEEECcCHHH-----HHHHHHHHhCCCcEEEEECC
Confidence 6899999776666 46789999999999998753
No 198
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=41.09 E-value=26 Score=29.62 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=24.5
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
|||++.- +.|.+ -..|+++|.++||+|+.++-..
T Consensus 1 MkvlVtG--atG~i--G~~l~~~L~~~g~~V~~~~R~~ 34 (221)
T 3ew7_A 1 MKIGIIG--ATGRA--GSRILEEAKNRGHEVTAIVRNA 34 (221)
T ss_dssp CEEEEET--TTSHH--HHHHHHHHHHTTCEEEEEESCS
T ss_pred CeEEEEc--CCchh--HHHHHHHHHhCCCEEEEEEcCc
Confidence 6776664 33333 2578999999999999987653
No 199
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=41.06 E-value=31 Score=28.74 Aligned_cols=41 Identities=12% Similarity=0.054 Sum_probs=29.5
Q ss_pred CCccEEEEecCCCccCHHHHHH-HHHHHHh-CCCeEEEEeCCC
Q 011765 4 NSKLQIAMFPWLAFGHMIPWLE-LAKLIAQ-KGHKIFFISTPR 44 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~-La~~L~~-rGh~Vt~~~~~~ 44 (478)
+.+|||+++-...+|+..-+.. +++.|.+ .|++|.++.-..
T Consensus 2 ~~M~kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~ 44 (188)
T 2ark_A 2 NAMGKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDE 44 (188)
T ss_dssp CCCEEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTT
T ss_pred CCCCEEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhh
Confidence 4467999987777788776554 5677777 888888775443
No 200
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=41.00 E-value=19 Score=34.13 Aligned_cols=31 Identities=16% Similarity=0.150 Sum_probs=25.9
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFIS 41 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~ 41 (478)
.|||+|+--+--| +.+|..|+++||+|+++-
T Consensus 1 sm~V~IVGaGpaG-----l~~A~~L~~~G~~v~v~E 31 (412)
T 4hb9_A 1 SMHVGIIGAGIGG-----TCLAHGLRKHGIKVTIYE 31 (412)
T ss_dssp CCEEEEECCSHHH-----HHHHHHHHHTTCEEEEEC
T ss_pred CCEEEEECcCHHH-----HHHHHHHHhCCCCEEEEe
Confidence 3899999766555 788999999999999984
No 201
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=40.97 E-value=40 Score=31.54 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=20.6
Q ss_pred CCCceeeeeccChhhH---HHHHHhCCcEec
Q 011765 354 HDSVGGFLTHAGWSSV---VEALQFGMPLIV 381 (478)
Q Consensus 354 ~~~~~~~ItHgG~~s~---~eal~~GvP~l~ 381 (478)
++++ +|++||+-|+ ..|...|+|+++
T Consensus 92 ~PDv--Vi~~g~~~s~p~~laA~~~~iP~vi 120 (365)
T 3s2u_A 92 RPVC--VLGLGGYVTGPGGLAARLNGVPLVI 120 (365)
T ss_dssp CCSE--EEECSSSTHHHHHHHHHHTTCCEEE
T ss_pred CCCE--EEEcCCcchHHHHHHHHHcCCCEEE
Confidence 4666 9999998764 557778999986
No 202
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=40.94 E-value=40 Score=28.77 Aligned_cols=45 Identities=13% Similarity=0.024 Sum_probs=31.5
Q ss_pred HhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEE
Q 011765 267 IKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFW 311 (478)
Q Consensus 267 ~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~ 311 (478)
+.+|+.....+.++||..++......+.+..+.++++++|..+.+
T Consensus 18 ~~~f~~~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~ 62 (206)
T 3l4e_A 18 FTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEE 62 (206)
T ss_dssp HHHHSCCCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 455654444456999998876533456778899999999987544
No 203
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*
Probab=40.81 E-value=30 Score=30.09 Aligned_cols=40 Identities=8% Similarity=-0.134 Sum_probs=24.6
Q ss_pred CCCCCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 1 MADNSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 1 ~~~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
|+...+.|.++++..+.| =-..+|+.|.++|++|+++...
T Consensus 1 M~~~~~~k~vlVTGas~g---IG~~ia~~l~~~G~~V~~~~r~ 40 (241)
T 1dhr_A 1 MAASGEARRVLVYGGRGA---LGSRCVQAFRARNWWVASIDVV 40 (241)
T ss_dssp -----CCCEEEEETTTSH---HHHHHHHHHHTTTCEEEEEESS
T ss_pred CCccCCCCEEEEECCCcH---HHHHHHHHHHhCCCEEEEEeCC
Confidence 665555556666554432 2467899999999999987654
No 204
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=40.75 E-value=35 Score=33.19 Aligned_cols=40 Identities=15% Similarity=0.129 Sum_probs=33.7
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCCccc
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQ-KGHKIFFISTPRNID 47 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~ 47 (478)
-+++...|+.|=..-++.+|..++. .|..|.|++.+...+
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~ 245 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQ 245 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHH
Confidence 4677888899999999999999886 689999999876543
No 205
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=40.74 E-value=37 Score=26.35 Aligned_cols=39 Identities=13% Similarity=-0.025 Sum_probs=25.3
Q ss_pred HHHHHhhcCCCEEEEcCCcc--cHHHHHHHh---------CCCeEEEecc
Q 011765 102 MAKLLQSLAPDWLLFDFAAY--WLPARAREL---------GIPSGFFSIF 140 (478)
Q Consensus 102 l~~ll~~~~pD~vI~D~~~~--~~~~~A~~l---------gIP~i~~~~~ 140 (478)
..+.++..+||+||.|...+ .|..+.+.+ .+|++.+...
T Consensus 50 al~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~pii~~s~~ 99 (143)
T 3m6m_D 50 VLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSAD 99 (143)
T ss_dssp HHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCEEEEESC
T ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCeEEEEeCC
Confidence 34445667899999997654 355554443 2788877653
No 206
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=40.71 E-value=20 Score=28.24 Aligned_cols=34 Identities=15% Similarity=0.128 Sum_probs=27.4
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
+.||+++.++..| ..+|+.|.++||+|+++....
T Consensus 7 ~~~viIiG~G~~G-----~~la~~L~~~g~~v~vid~~~ 40 (140)
T 3fwz_A 7 CNHALLVGYGRVG-----SLLGEKLLASDIPLVVIETSR 40 (140)
T ss_dssp CSCEEEECCSHHH-----HHHHHHHHHTTCCEEEEESCH
T ss_pred CCCEEEECcCHHH-----HHHHHHHHHCCCCEEEEECCH
Confidence 4689998765544 578999999999999988764
No 207
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=40.60 E-value=47 Score=24.64 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=25.5
Q ss_pred HHHHHhhcCCCEEEEcCCcc--cHHHHHHH----hCCCeEEEecc
Q 011765 102 MAKLLQSLAPDWLLFDFAAY--WLPARARE----LGIPSGFFSIF 140 (478)
Q Consensus 102 l~~ll~~~~pD~vI~D~~~~--~~~~~A~~----lgIP~i~~~~~ 140 (478)
..+.+++.+||+||.|...+ .|..+.+. .++|++.+...
T Consensus 38 al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~~ 82 (120)
T 3f6p_A 38 AVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTAK 82 (120)
T ss_dssp HHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEES
T ss_pred HHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECC
Confidence 34455677899999997655 24444433 36888877653
No 208
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=40.44 E-value=1.1e+02 Score=29.10 Aligned_cols=31 Identities=13% Similarity=-0.009 Sum_probs=24.3
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhC-CCeEEEEeC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQK-GHKIFFIST 42 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~r-Gh~Vt~~~~ 42 (478)
|||+++..++ +...++..|+++ |++++++.+
T Consensus 1 mkililG~g~-----r~~a~a~~l~~~~g~~~v~~~~ 32 (417)
T 2ip4_A 1 MKVLVVGSGG-----REHALLWKAAQSPRVKRLYAAP 32 (417)
T ss_dssp CEEEEEESSH-----HHHHHHHHHHTCSSCCEEEEEE
T ss_pred CEEEEECCCH-----HHHHHHHHHHhCCCCCEEEEEC
Confidence 7899987773 467899999875 888887764
No 209
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=40.43 E-value=32 Score=25.94 Aligned_cols=38 Identities=13% Similarity=0.034 Sum_probs=28.4
Q ss_pred CCCccEEEEecCCCccCHHHHH-HHHHHHHhCCCe-EEEE
Q 011765 3 DNSKLQIAMFPWLAFGHMIPWL-ELAKLIAQKGHK-IFFI 40 (478)
Q Consensus 3 ~~~~~~il~~~~~~~gH~~p~l-~La~~L~~rGh~-Vt~~ 40 (478)
.+.++||+++|..+.|.-.-.. .|-+.+.++|.+ +.+-
T Consensus 15 ~~~~~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~ 54 (110)
T 3czc_A 15 RGSMVKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESA 54 (110)
T ss_dssp ---CEEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred ccCCcEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 3446899999999998888777 777788889987 5443
No 210
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=40.36 E-value=27 Score=29.31 Aligned_cols=39 Identities=13% Similarity=0.234 Sum_probs=28.1
Q ss_pred CccEEEEecCCCccCHHHHHH-HHHHHHhCCCeEEEEeCCC
Q 011765 5 SKLQIAMFPWLAFGHMIPWLE-LAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~-La~~L~~rGh~Vt~~~~~~ 44 (478)
.+|||+++... .|+..-+.. +++.|.+.|++|.++.-..
T Consensus 3 ~mmkilii~~S-~g~T~~la~~i~~~l~~~g~~v~~~~l~~ 42 (199)
T 2zki_A 3 CKPNILVLFYG-YGSIVELAKEIGKGAEEAGAEVKIRRVRE 42 (199)
T ss_dssp CCCEEEEEECC-SSHHHHHHHHHHHHHHHHSCEEEEEECCC
T ss_pred CCcEEEEEEeC-ccHHHHHHHHHHHHHHhCCCEEEEEehhH
Confidence 36899998888 888766544 4666666799998875433
No 211
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=40.11 E-value=11 Score=32.38 Aligned_cols=33 Identities=12% Similarity=0.164 Sum_probs=25.3
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
|||+++..+. --..+|+.|.++||+|+++....
T Consensus 1 M~iiIiG~G~-----~G~~la~~L~~~g~~v~vid~~~ 33 (218)
T 3l4b_C 1 MKVIIIGGET-----TAYYLARSMLSRKYGVVIINKDR 33 (218)
T ss_dssp CCEEEECCHH-----HHHHHHHHHHHTTCCEEEEESCH
T ss_pred CEEEEECCCH-----HHHHHHHHHHhCCCeEEEEECCH
Confidence 6788876432 34578999999999999988554
No 212
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Probab=40.00 E-value=16 Score=33.53 Aligned_cols=35 Identities=9% Similarity=0.151 Sum_probs=26.4
Q ss_pred CCccEEEEecCCCccCHHHHHHHHHHHHhCCC-eEEEEeCC
Q 011765 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGH-KIFFISTP 43 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh-~Vt~~~~~ 43 (478)
+++|||.|+-.+..| ..+|+.|++.|| +|+++...
T Consensus 22 ~~~~~I~iIG~G~mG-----~~~A~~L~~~G~~~V~~~dr~ 57 (312)
T 3qsg_A 22 SNAMKLGFIGFGEAA-----SAIASGLRQAGAIDMAAYDAA 57 (312)
T ss_dssp ---CEEEEECCSHHH-----HHHHHHHHHHSCCEEEEECSS
T ss_pred CCCCEEEEECccHHH-----HHHHHHHHHCCCCeEEEEcCC
Confidence 446899999776666 478999999999 99987653
No 213
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}
Probab=39.75 E-value=11 Score=35.03 Aligned_cols=43 Identities=19% Similarity=0.128 Sum_probs=32.6
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLP 53 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g 53 (478)
.|||+++-.++.| ..+|..|++.||+|+++......+.+.+.|
T Consensus 3 ~mkI~IiGaG~~G-----~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g 45 (335)
T 3ghy_A 3 LTRICIVGAGAVG-----GYLGARLALAGEAINVLARGATLQALQTAG 45 (335)
T ss_dssp CCCEEEESCCHHH-----HHHHHHHHHTTCCEEEECCHHHHHHHHHTC
T ss_pred CCEEEEECcCHHH-----HHHHHHHHHCCCEEEEEEChHHHHHHHHCC
Confidence 5899999887776 457899999999999998754444444444
No 214
>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}
Probab=39.69 E-value=24 Score=31.80 Aligned_cols=32 Identities=16% Similarity=0.365 Sum_probs=24.4
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFIS 41 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~ 41 (478)
++|||.|+-.+..|. .+|+.|.+.||+|+++.
T Consensus 2 ~~m~i~iiG~G~~G~-----~~a~~l~~~g~~V~~~~ 33 (295)
T 1yb4_A 2 NAMKLGFIGLGIMGS-----PMAINLARAGHQLHVTT 33 (295)
T ss_dssp --CEEEECCCSTTHH-----HHHHHHHHTTCEEEECC
T ss_pred CCCEEEEEccCHHHH-----HHHHHHHhCCCEEEEEc
Confidence 468999998777764 47888999999998764
No 215
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=39.66 E-value=23 Score=32.05 Aligned_cols=38 Identities=3% Similarity=0.051 Sum_probs=28.7
Q ss_pred cEEEEecCCCcc---CHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 7 LQIAMFPWLAFG---HMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 7 ~~il~~~~~~~g---H~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
|||+++..+... .......++++|.++||+|.++....
T Consensus 2 m~i~il~~~~~~~~~~~~s~~~l~~a~~~~G~~v~~~d~~~ 42 (316)
T 1gsa_A 2 IKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMGD 42 (316)
T ss_dssp CEEEEECSCGGGCCTTTCHHHHHHHHHHHTTCEEEEECGGG
T ss_pred ceEEEEeCcHHhCCcCCChHHHHHHHHHHCCCEEEEEchhH
Confidence 699999877432 12345679999999999999987653
No 216
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=39.57 E-value=37 Score=30.04 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=30.9
Q ss_pred hHHHHHHHhhcCCCEEEEcCCcc------cHHHHHHHhCCCeEEEec
Q 011765 99 EEPMAKLLQSLAPDWLLFDFAAY------WLPARARELGIPSGFFSI 139 (478)
Q Consensus 99 ~~~l~~ll~~~~pD~vI~D~~~~------~~~~~A~~lgIP~i~~~~ 139 (478)
...+.+++++.+||+|++..... .+..+|..||+|.+...+
T Consensus 102 a~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~~~vt~v~ 148 (252)
T 1efp_B 102 AKILAAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGWAQATFAS 148 (252)
T ss_dssp HHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCCCccccEE
Confidence 34555566667899999886543 477899999999998754
No 217
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_B 3fih_B* 3j18_B* 2wwl_B 3oar_B 3oaq_B 3ofb_B 3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B 4a2i_B 4gd1_B 4gd2_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B ...
Probab=39.55 E-value=79 Score=27.22 Aligned_cols=33 Identities=27% Similarity=0.206 Sum_probs=24.3
Q ss_pred CCCEE-EEcCCcc-cHHHHHHHhCCCeEEEecchH
Q 011765 110 APDWL-LFDFAAY-WLPARARELGIPSGFFSIFTA 142 (478)
Q Consensus 110 ~pD~v-I~D~~~~-~~~~~A~~lgIP~i~~~~~~~ 142 (478)
.||+| |.|+..- -++.=|.++|||+|.+..+++
T Consensus 149 ~Pdllvv~Dp~~e~~ai~Ea~~l~IP~IalvDTn~ 183 (218)
T 3r8n_B 149 LPDALFVIDADHEHIAIKEANNLGIPVFAIVDTNS 183 (218)
T ss_dssp CCCSCEEEETGGGHHHHHHHHHHTCCCEEECCSSS
T ss_pred CCCeEEecCcccccHHHHHHHHhCCCEEEEEeCcC
Confidence 69887 5676433 466779999999999976543
No 218
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Probab=39.37 E-value=25 Score=31.54 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=26.1
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
|||+|+-.+..| ..+|..|.++||+|+++....
T Consensus 1 m~i~iiG~G~~G-----~~~a~~l~~~g~~V~~~~r~~ 33 (291)
T 1ks9_A 1 MKITVLGCGALG-----QLWLTALCKQGHEVQGWLRVP 33 (291)
T ss_dssp CEEEEECCSHHH-----HHHHHHHHHTTCEEEEECSSC
T ss_pred CeEEEECcCHHH-----HHHHHHHHhCCCCEEEEEcCc
Confidence 688888776666 468899999999999986543
No 219
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=39.14 E-value=1.2e+02 Score=25.04 Aligned_cols=113 Identities=9% Similarity=-0.005 Sum_probs=62.4
Q ss_pred CceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCC-ChhhhhhcCCCcEEE---eccCChhhhh
Q 011765 277 GSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIEL-PDGFEERTRGRGVVY---TSWAPQLAIL 352 (478)
Q Consensus 277 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~-p~~~~~~~~~~n~~~---~~~vpq~~vL 352 (478)
+.+++.-.|+.... ....+++.|.+.+..+..++.... ..-+ |..+. .... .++. ..|+++..+-
T Consensus 6 k~IllgvTGs~aa~---k~~~ll~~L~~~g~~V~vv~T~~A------~~fi~~~~l~-~l~~-~v~~~~~~~~~~hi~l~ 74 (175)
T 3qjg_A 6 ENVLICLCGSVNSI---NISHYIIELKSKFDEVNVIASTNG------RKFINGEILK-QFCD-NYYDEFEDPFLNHVDIA 74 (175)
T ss_dssp CEEEEEECSSGGGG---GHHHHHHHHTTTCSEEEEEECTGG------GGGSCHHHHH-HHCS-CEECTTTCTTCCHHHHH
T ss_pred CEEEEEEeCHHHHH---HHHHHHHHHHHCCCEEEEEECcCH------HHHhhHHHHH-HhcC-CEEecCCCCcccccccc
Confidence 44666666776643 245566777777877766665431 1112 22222 2211 2221 1345555555
Q ss_pred cCCCceeeeeccChhhHHH-------------HHHhCCcEeccccccc-------hhhHHHHHhhcCeE
Q 011765 353 AHDSVGGFLTHAGWSSVVE-------------ALQFGMPLIVLTCYAD-------QGLNAKLLEEKQIV 401 (478)
Q Consensus 353 ~~~~~~~~ItHgG~~s~~e-------------al~~GvP~l~~P~~~D-------Q~~na~~v~~~g~G 401 (478)
..+++ .+|.=|-+||+.. ++..++|+++.|.... -..|-.++.+.|+=
T Consensus 75 ~~aD~-~vVaPaTanTlakiA~GiaDnLlt~~~la~~~pvvl~Pamn~~m~~~p~~~~Nl~~L~~~G~~ 142 (175)
T 3qjg_A 75 NKHDK-IIILPATSNTINKIANGICDNLLLTICHTAFEKLSIFPNMNLRMWENPVTQNNIRLLKDYGVS 142 (175)
T ss_dssp HTCSE-EEEEEECHHHHHHHHTTCCCSHHHHHHHTCGGGEEEEECEEHHHHTCHHHHHHHHHHHHTTCE
T ss_pred chhCE-EEEeeCCHHHHHHHHccccCCHHHHHHHHcCCCEEEEecCChhhhcCHHHHHHHHHHHHCCCE
Confidence 55554 3566566665543 4677899999994322 24577778887764
No 220
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=39.12 E-value=33 Score=31.47 Aligned_cols=36 Identities=25% Similarity=0.421 Sum_probs=25.6
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
++|+|++.. +.|.+ -..|++.|.++||+|+.++...
T Consensus 12 ~~M~ilVtG--atG~i--G~~l~~~L~~~g~~V~~~~r~~ 47 (342)
T 2x4g_A 12 AHVKYAVLG--ATGLL--GHHAARAIRAAGHDLVLIHRPS 47 (342)
T ss_dssp CCCEEEEES--TTSHH--HHHHHHHHHHTTCEEEEEECTT
T ss_pred cCCEEEEEC--CCcHH--HHHHHHHHHHCCCEEEEEecCh
Confidence 357887764 33333 2578899999999999887543
No 221
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=39.02 E-value=18 Score=28.19 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=24.6
Q ss_pred CCCCCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 1 MADNSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 1 ~~~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
|..-++.||+++..+..| ..+++.|.++|++|+++...
T Consensus 1 m~~~~~~~v~I~G~G~iG-----~~~a~~l~~~g~~v~~~d~~ 38 (144)
T 2hmt_A 1 MGRIKNKQFAVIGLGRFG-----GSIVKELHRMGHEVLAVDIN 38 (144)
T ss_dssp -----CCSEEEECCSHHH-----HHHHHHHHHTTCCCEEEESC
T ss_pred CCCCcCCcEEEECCCHHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 443334578888654334 56789999999999988754
No 222
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=38.99 E-value=31 Score=30.36 Aligned_cols=35 Identities=14% Similarity=0.058 Sum_probs=29.1
Q ss_pred ccEEEEecCC--CccCHHHHHHHHHHHHhCCCeEEEE
Q 011765 6 KLQIAMFPWL--AFGHMIPWLELAKLIAQKGHKIFFI 40 (478)
Q Consensus 6 ~~~il~~~~~--~~gH~~p~l~La~~L~~rGh~Vt~~ 40 (478)
++|.+|++.. ..|=..-.+.|++.|+++|++|.++
T Consensus 20 m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~f 56 (242)
T 3qxc_A 20 QGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILL 56 (242)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEE
Confidence 5677666444 4599999999999999999999997
No 223
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=38.82 E-value=29 Score=31.68 Aligned_cols=35 Identities=9% Similarity=0.218 Sum_probs=27.4
Q ss_pred CCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
.++|||.|+-.+..| ..+|+.|++.||+|+++...
T Consensus 19 ~~m~~I~iIG~G~mG-----~~~A~~l~~~G~~V~~~dr~ 53 (310)
T 3doj_A 19 SHMMEVGFLGLGIMG-----KAMSMNLLKNGFKVTVWNRT 53 (310)
T ss_dssp CCSCEEEEECCSHHH-----HHHHHHHHHTTCEEEEECSS
T ss_pred ccCCEEEEECccHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 346899999766555 57899999999999987543
No 224
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=38.71 E-value=28 Score=30.67 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=31.2
Q ss_pred CCCCCccEE-EEe-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 011765 1 MADNSKLQI-AMF-PWLAFGHMIPWLELAKLIAQKGHKIFFISTPRN 45 (478)
Q Consensus 1 ~~~~~~~~i-l~~-~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~ 45 (478)
|... +|++ .++ +-++.|-..-..+||..|+++|++|.++-.+..
T Consensus 1 m~~~-~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 46 (257)
T 1wcv_1 1 MLRA-KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQ 46 (257)
T ss_dssp -----CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCCC-CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 5554 4555 444 345679999999999999999999999876643
No 225
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=38.66 E-value=69 Score=27.51 Aligned_cols=109 Identities=7% Similarity=-0.018 Sum_probs=0.0
Q ss_pred CCCCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc---cccCCCCCCCCCCCeEEEEecCCCCCCCCCCcc
Q 011765 2 ADNSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRN---IDRLPRLPQNLASMIQFVKISLPHVDNLRENAE 78 (478)
Q Consensus 2 ~~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~---~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~ 78 (478)
+...+|||+++..+.-+-+..++.-.+. ..+++|..+.+... .+..++.| +.+..++. .....
T Consensus 8 ~~~~~~ri~vl~SG~gsnl~all~~~~~--~~~~eI~~Vis~~~a~~~~~A~~~g------Ip~~~~~~---~~~~~--- 73 (215)
T 3da8_A 8 PPSAPARLVVLASGTGSLLRSLLDAAVG--DYPARVVAVGVDRECRAAEIAAEAS------VPVFTVRL---ADHPS--- 73 (215)
T ss_dssp CCCSSEEEEEEESSCCHHHHHHHHHSST--TCSEEEEEEEESSCCHHHHHHHHTT------CCEEECCG---GGSSS---
T ss_pred CCCCCcEEEEEEeCChHHHHHHHHHHhc--cCCCeEEEEEeCCchHHHHHHHHcC------CCEEEeCc---ccccc---
Q ss_pred ccCCCChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcc-cHHHHHHHhCCCeEEEecc
Q 011765 79 ATIDLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAY-WLPARARELGIPSGFFSIF 140 (478)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~-~~~~~A~~lgIP~i~~~~~ 140 (478)
-....+.+.+.+++.+||+||.-.+.. -...+-+...-.++-++++
T Consensus 74 ----------------r~~~d~~~~~~l~~~~~Dlivlagy~~iL~~~~l~~~~~~~iNiHpS 120 (215)
T 3da8_A 74 ----------------RDAWDVAITAATAAHEPDLVVSAGFMRILGPQFLSRFYGRTLNTHPA 120 (215)
T ss_dssp ----------------HHHHHHHHHHHHHTTCCSEEEEEECCSCCCHHHHHHHTTTEEEEESS
T ss_pred ----------------hhhhhHHHHHHHHhhCCCEEEEcCchhhCCHHHHhhccCCeEEeCcc
No 226
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=38.51 E-value=28 Score=29.72 Aligned_cols=34 Identities=15% Similarity=0.340 Sum_probs=25.8
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
++|+|.++-.+..| ..+|..|.++||+|+++...
T Consensus 18 ~~~~I~iiG~G~mG-----~~la~~l~~~g~~V~~~~~~ 51 (209)
T 2raf_A 18 QGMEITIFGKGNMG-----QAIGHNFEIAGHEVTYYGSK 51 (209)
T ss_dssp --CEEEEECCSHHH-----HHHHHHHHHTTCEEEEECTT
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHHCCCEEEEEcCC
Confidence 36899998766555 56789999999999988543
No 227
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=37.94 E-value=62 Score=27.41 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=26.0
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRN 45 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~ 45 (478)
+|+|++.. +.|.+ -..|++.|.++||+|+.++-...
T Consensus 4 m~~ilItG--atG~i--G~~l~~~L~~~g~~V~~~~r~~~ 39 (227)
T 3dhn_A 4 VKKIVLIG--ASGFV--GSALLNEALNRGFEVTAVVRHPE 39 (227)
T ss_dssp CCEEEEET--CCHHH--HHHHHHHHHTTTCEEEEECSCGG
T ss_pred CCEEEEEc--CCchH--HHHHHHHHHHCCCEEEEEEcCcc
Confidence 57887763 33433 25789999999999999876543
No 228
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=37.85 E-value=43 Score=25.19 Aligned_cols=38 Identities=5% Similarity=-0.146 Sum_probs=25.7
Q ss_pred CCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 011765 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFIS 41 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~ 41 (478)
+++|||+++|..+-|=-.-...+=++..++|.+|.+..
T Consensus 4 ~~~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a 41 (108)
T 3nbm_A 4 SKELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANS 41 (108)
T ss_dssp -CCEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEE
Confidence 56899999988876443344445555556799988855
No 229
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=37.61 E-value=20 Score=32.69 Aligned_cols=35 Identities=9% Similarity=0.165 Sum_probs=26.8
Q ss_pred CCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
+++|||.|+-.+..| ..+|+.|++.||+|+++...
T Consensus 5 ~~~~~I~iIG~G~mG-----~~~a~~l~~~G~~V~~~dr~ 39 (303)
T 3g0o_A 5 GTDFHVGIVGLGSMG-----MGAARSCLRAGLSTWGADLN 39 (303)
T ss_dssp --CCEEEEECCSHHH-----HHHHHHHHHTTCEEEEECSC
T ss_pred CCCCeEEEECCCHHH-----HHHHHHHHHCCCeEEEEECC
Confidence 456899999776666 46899999999999988543
No 230
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=37.56 E-value=40 Score=28.11 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=28.2
Q ss_pred ccEEEEecCCCccCHHHHHH-HHHHHHhCCCeEEEEeCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLE-LAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~-La~~L~~rGh~Vt~~~~~~ 44 (478)
+|||+++.....|+..-+.. +++.|.+.|++|.++.-..
T Consensus 5 M~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~ 44 (200)
T 2a5l_A 5 SPYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPA 44 (200)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCC
T ss_pred cceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhh
Confidence 56998887777787766544 5677777899998875433
No 231
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=37.55 E-value=56 Score=18.59 Aligned_cols=29 Identities=21% Similarity=0.211 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHhc
Q 011765 416 NSVAESLRLVLVEEKGQIYRDKAKEMKGLFG 446 (478)
Q Consensus 416 ~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~ 446 (478)
.+++++|+++++. +......+.++++.+.
T Consensus 4 nQledKvEel~~~--~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 4 KQVADKLEEVASK--LYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH--hHHHHHHHHHHHHHhc
Confidence 4688899999974 5677788888887764
No 232
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=37.32 E-value=19 Score=32.73 Aligned_cols=53 Identities=13% Similarity=0.096 Sum_probs=36.8
Q ss_pred CCCceeeeeccChhhHHHHHHh----CCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhcc
Q 011765 354 HDSVGGFLTHAGWSSVVEALQF----GMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLVE 428 (478)
Q Consensus 354 ~~~~~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~~ 428 (478)
.+++ +|+-||=||+.+++.. ++|+++++.. ..-...+ +.++++.++++.++++
T Consensus 63 ~~D~--vi~~GGDGT~l~a~~~~~~~~~P~lGI~~G----------------t~gfla~----~~~~~~~~al~~i~~g 119 (292)
T 2an1_A 63 QADL--AVVVGGDGNMLGAARTLARYDINVIGINRG----------------NLGFLTD----LDPDNALQQLSDVLEG 119 (292)
T ss_dssp HCSE--EEECSCHHHHHHHHHHHTTSSCEEEEBCSS----------------SCCSSCC----BCTTSHHHHHHHHHTT
T ss_pred CCCE--EEEEcCcHHHHHHHHHhhcCCCCEEEEECC----------------CcccCCc----CCHHHHHHHHHHHHcC
Confidence 3455 9999999999999854 7899998742 1111112 3456788888888874
No 233
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=36.90 E-value=82 Score=20.16 Aligned_cols=30 Identities=10% Similarity=0.168 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHhcccCChHHHHHHHHH
Q 011765 431 GQIYRDKAKEMKGLFGDKGRHDRYVDNFLN 460 (478)
Q Consensus 431 ~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~ 460 (478)
..+|+++...++..+..-+|++..+..|+.
T Consensus 4 waefkqrlaaiktrlqalggseaelaafek 33 (73)
T 2a3d_A 4 WAEFKQRLAAIKTRLQALGGSEAELAAFEK 33 (73)
T ss_dssp HHHHHHHHHHHHHHHHHCSSGGGTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 457999999999999988888654444443
No 234
>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1
Probab=36.80 E-value=23 Score=32.57 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCCc
Q 011765 22 PWLELAKLIAQKGHKIFFISTPRN 45 (478)
Q Consensus 22 p~l~La~~L~~rGh~Vt~~~~~~~ 45 (478)
.-.++|+++.++|++|+|++.+..
T Consensus 67 mG~aiAe~~~~~Ga~V~lv~g~~s 90 (313)
T 1p9o_A 67 RGATSAEAFLAAGYGVLFLYRARS 90 (313)
T ss_dssp HHHHHHHHHHHTTCEEEEEEETTS
T ss_pred HHHHHHHHHHHCCCEEEEEecCCC
Confidence 567899999999999999987653
No 235
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=36.78 E-value=20 Score=35.50 Aligned_cols=37 Identities=16% Similarity=0.060 Sum_probs=29.2
Q ss_pred CCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 011765 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRN 45 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~ 45 (478)
+.|.||+++--+.-| +.+|+.|.++|++||++...++
T Consensus 40 ~~KprVVIIGgG~AG-----l~~A~~L~~~~~~VtLId~~~~ 76 (502)
T 4g6h_A 40 SDKPNVLILGSGWGA-----ISFLKHIDTKKYNVSIISPRSY 76 (502)
T ss_dssp CSSCEEEEECSSHHH-----HHHHHHSCTTTCEEEEEESSSE
T ss_pred CCCCCEEEECCcHHH-----HHHHHHhhhCCCcEEEECCCCC
Confidence 447899999766444 5788999999999999987654
No 236
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=36.77 E-value=30 Score=27.58 Aligned_cols=97 Identities=16% Similarity=0.161 Sum_probs=60.0
Q ss_pred EEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChhHHH
Q 011765 10 AMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYDEVK 89 (478)
Q Consensus 10 l~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 89 (478)
+|++... .+=.-++.+|+.|.+.|+++. ++......+++.| +.+..+. ...++..
T Consensus 27 vliSv~d-~dK~~l~~~a~~l~~lGf~i~--AT~GTa~~L~~~G------i~v~~v~-----k~~egg~----------- 81 (143)
T 2yvq_A 27 ILIGIQQ-SFRPRFLGVAEQLHNEGFKLF--ATEATSDWLNANN------VPATPVA-----WPSQEGQ----------- 81 (143)
T ss_dssp EEEECCG-GGHHHHHHHHHHHHTTTCEEE--EEHHHHHHHHHTT------CCCEEEC-----CGGGC-------------
T ss_pred EEEEecc-cchHHHHHHHHHHHHCCCEEE--ECchHHHHHHHcC------CeEEEEE-----eccCCCc-----------
Confidence 4444433 356668899999999999743 3444455666666 6666663 1111100
Q ss_pred HHHHHHhhhhHHHHHHHhhcCCCEEEEcCCc--------ccHHHHHHHhCCCeEEE
Q 011765 90 YLKQSFDCLEEPMAKLLQSLAPDWLLFDFAA--------YWLPARARELGIPSGFF 137 (478)
Q Consensus 90 ~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~--------~~~~~~A~~lgIP~i~~ 137 (478)
....+.+.+++++-+.|+||...-. ..-...|-.++||++..
T Consensus 82 ------~~~~~~i~d~i~~g~i~lVInt~~~~~~~~~d~~~iRR~Av~~~IP~~T~ 131 (143)
T 2yvq_A 82 ------NPSLSSIRKLIRDGSIDLVINLPNNNTKFVHDNYVIRRTAVDSGIPLLTN 131 (143)
T ss_dssp ---------CBCHHHHHHTTSCCEEEECCCCCGGGHHHHHHHHHHHHHTTCCEECS
T ss_pred ------ccccccHHHHHHCCCceEEEECCCCCCcCCccHHHHHHHHHHhCCCeEcC
Confidence 0001467788889999999986532 12245688899999964
No 237
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=36.59 E-value=31 Score=30.56 Aligned_cols=42 Identities=12% Similarity=0.111 Sum_probs=35.1
Q ss_pred ccEEEEecCC---CccCHHHHHHHHHHHHhCCCeEEEEeCCCccc
Q 011765 6 KLQIAMFPWL---AFGHMIPWLELAKLIAQKGHKIFFISTPRNID 47 (478)
Q Consensus 6 ~~~il~~~~~---~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 47 (478)
+||..|++.+ +.|--.-..+|+.-|..||++||..=-+++..
T Consensus 22 ~mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt~~KiDPYlN 66 (294)
T 2c5m_A 22 SMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYIN 66 (294)
T ss_dssp CCEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEECCEEECBCC
T ss_pred ceEEEEEcCccccccchHHHHHHHHHHHHHCCCeeEEEecCCcee
Confidence 7899999876 45777889999999999999999877666654
No 238
>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}
Probab=36.10 E-value=15 Score=33.67 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=27.3
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhC-----C-CeEEEEeCC
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQK-----G-HKIFFISTP 43 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~r-----G-h~Vt~~~~~ 43 (478)
.+|||+|+-.+..|. .+|..|.+. | |+|+++..+
T Consensus 7 ~~m~I~iiG~G~mG~-----~~a~~L~~~~~~~~g~~~V~~~~r~ 46 (317)
T 2qyt_A 7 QPIKIAVFGLGGVGG-----YYGAMLALRAAATDGLLEVSWIARG 46 (317)
T ss_dssp CCEEEEEECCSHHHH-----HHHHHHHHHHHHTTSSEEEEEECCH
T ss_pred CCCEEEEECcCHHHH-----HHHHHHHhCccccCCCCCEEEEEcH
Confidence 468999998777774 567888888 9 999998763
No 239
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=36.08 E-value=1.3e+02 Score=28.64 Aligned_cols=32 Identities=13% Similarity=0.039 Sum_probs=24.0
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhC-CCeEEEEeCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQK-GHKIFFISTP 43 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~r-Gh~Vt~~~~~ 43 (478)
|||+++..++ +...++..|+++ |++++++.+.
T Consensus 1 m~ililG~g~-----r~~~~a~~~~~~~g~~~v~~~~~ 33 (424)
T 2yw2_A 1 MKVLVVGNGG-----REHAIAWKVAQSPLVKELYVAKG 33 (424)
T ss_dssp CEEEEEESSH-----HHHHHHHHHTTCTTCSEEEEEEC
T ss_pred CEEEEECCCH-----HHHHHHHHHhhCCCCCEEEEECC
Confidence 6899887763 467888888765 8998877653
No 240
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=35.86 E-value=26 Score=32.17 Aligned_cols=44 Identities=18% Similarity=0.411 Sum_probs=31.6
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCC
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLP 53 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g 53 (478)
.+|||+++-.++.| ..+|..|++.||+|+++..+...+.+.+.|
T Consensus 18 ~~~kI~IiGaGa~G-----~~~a~~L~~~G~~V~l~~~~~~~~~i~~~g 61 (318)
T 3hwr_A 18 QGMKVAIMGAGAVG-----CYYGGMLARAGHEVILIARPQHVQAIEATG 61 (318)
T ss_dssp --CEEEEESCSHHH-----HHHHHHHHHTTCEEEEECCHHHHHHHHHHC
T ss_pred cCCcEEEECcCHHH-----HHHHHHHHHCCCeEEEEEcHhHHHHHHhCC
Confidence 47999999888777 457889999999999995444444444444
No 241
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=35.67 E-value=55 Score=28.18 Aligned_cols=102 Identities=14% Similarity=0.066 Sum_probs=53.3
Q ss_pred hhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEec
Q 011765 265 RSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTS 344 (478)
Q Consensus 265 ~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~ 344 (478)
.++-++|...+ ..+|+.|.. .-.+....++....+-+++-++.... .|.+.. .....++.+++
T Consensus 31 ~~lg~~LA~~g---~~lV~GGg~----~GlM~aa~~gA~~~GG~~iGv~p~~l---------~~~e~~-~~~~~~~~~~~ 93 (216)
T 1ydh_A 31 IELGNELVKRK---IDLVYGGGS----VGLMGLISRRVYEGGLHVLGIIPKAL---------MPIEIS-GETVGDVRVVA 93 (216)
T ss_dssp HHHHHHHHHTT---CEEEECCCS----SHHHHHHHHHHHHTTCCEEEEEEGGG---------HHHHCC-SSCCSEEEEES
T ss_pred HHHHHHHHHCC---CEEEECCCc----ccHhHHHHHHHHHcCCcEEEEechhc---------Cccccc-cCCCCcccccC
Confidence 34555665543 555666542 13344555555556666666553210 000000 00111344555
Q ss_pred cCCh-hhhh-cCCCceeeeeccChhhHHHHH---------HhCCcEecccc
Q 011765 345 WAPQ-LAIL-AHDSVGGFLTHAGWSSVVEAL---------QFGMPLIVLTC 384 (478)
Q Consensus 345 ~vpq-~~vL-~~~~~~~~ItHgG~~s~~eal---------~~GvP~l~~P~ 384 (478)
..+. ..++ ..++. .++--||.||+-|.. .+++|++.+-.
T Consensus 94 ~~~~Rk~~~~~~sda-~I~lpGG~GTLdElfE~lt~~qlg~~~kPvvll~~ 143 (216)
T 1ydh_A 94 DMHERKAAMAQEAEA-FIALPGGYGTMEELLEMITWSQLGIHKKTVGLLNV 143 (216)
T ss_dssp SHHHHHHHHHHHCSE-EEECSCSHHHHHHHHHHHHHHHHTSCCCEEEEECG
T ss_pred CHHHHHHHHHHhCCE-EEEeCCCccHHHHHHHHHHHHHhcccCCCEEEecC
Confidence 5544 3333 34443 477889999988876 46999998863
No 242
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=35.62 E-value=37 Score=28.85 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=24.4
Q ss_pred CCccE-EEEecCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCC
Q 011765 4 NSKLQ-IAMFPWLAFGHMIPWLELAKLIA-QKGHKIFFISTPR 44 (478)
Q Consensus 4 ~~~~~-il~~~~~~~gH~~p~l~La~~L~-~rGh~Vt~~~~~~ 44 (478)
+.+|| |++.- +.|.+ -..+++.|. ++||+|+.++-..
T Consensus 2 ~~mmk~vlVtG--asg~i--G~~~~~~l~~~~g~~V~~~~r~~ 40 (221)
T 3r6d_A 2 NAMYXYITILG--AAGQI--AQXLTATLLTYTDMHITLYGRQL 40 (221)
T ss_dssp CCSCSEEEEES--TTSHH--HHHHHHHHHHHCCCEEEEEESSH
T ss_pred CceEEEEEEEe--CCcHH--HHHHHHHHHhcCCceEEEEecCc
Confidence 34567 54443 22322 368899999 8999999887653
No 243
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A 3adp_A* 3f3s_A*
Probab=35.31 E-value=27 Score=32.18 Aligned_cols=38 Identities=18% Similarity=0.166 Sum_probs=26.2
Q ss_pred CCCCCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 1 MADNSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 1 ~~~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
|.+.+.+||.|+-.+..| ..+|..|+++||+|+++...
T Consensus 1 m~~~~~~kI~vIGaG~MG-----~~iA~~la~~G~~V~l~d~~ 38 (319)
T 2dpo_A 1 MASPAAGDVLIVGSGLVG-----RSWAMLFASGGFRVKLYDIE 38 (319)
T ss_dssp ------CEEEEECCSHHH-----HHHHHHHHHTTCCEEEECSC
T ss_pred CCCCCCceEEEEeeCHHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 655556789999776666 57899999999999987654
No 244
>2fb6_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.46A {Bacteroides thetaiotaomicron}
Probab=35.19 E-value=36 Score=26.06 Aligned_cols=42 Identities=10% Similarity=-0.043 Sum_probs=30.4
Q ss_pred ccEEEEecCCCc-cCH-HHHHHHHHHHHhCC--CeEEEEeCCCccc
Q 011765 6 KLQIAMFPWLAF-GHM-IPWLELAKLIAQKG--HKIFFISTPRNID 47 (478)
Q Consensus 6 ~~~il~~~~~~~-gH~-~p~l~La~~L~~rG--h~Vt~~~~~~~~~ 47 (478)
+||++|+-+... -.. +..+..|....++| |+|.++...+-.+
T Consensus 7 ~~K~~ivi~s~d~~~~~~~al~~A~~a~~~G~~~eV~i~~~G~~v~ 52 (117)
T 2fb6_A 7 NDKLTILWTTDNKDTVFNMLAMYALNSKNRGWWKHINIILWGASVK 52 (117)
T ss_dssp TSEEEEEECCCCHHHHHHTHHHHHHHHHHHTSCSEEEEEECSHHHH
T ss_pred CCeEEEEEEcCChHHHHHHHHHHHHHHHHcCCCCcEEEEEECCeee
Confidence 488888766643 222 44778899999999 8999988776543
No 245
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=35.19 E-value=1e+02 Score=23.34 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=30.0
Q ss_pred CCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhc
Q 011765 376 GMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLV 427 (478)
Q Consensus 376 GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~ 427 (478)
.+|+|++--..|.......+...|+--.+.+- ++.++|..+|+.++.
T Consensus 72 ~~~ii~~s~~~~~~~~~~~~~~~ga~~~l~KP-----~~~~~L~~~i~~~~~ 118 (139)
T 2jk1_A 72 ETVRIIITGYTDSASMMAAINDAGIHQFLTKP-----WHPEQLLSSARNAAR 118 (139)
T ss_dssp TSEEEEEESCTTCHHHHHHHHHTTCCEEEESS-----CCHHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCChHHHHHHHHhhchhhhccCC-----CCHHHHHHHHHHHHH
Confidence 56777765544443333444444554444443 699999999999988
No 246
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=35.06 E-value=39 Score=30.66 Aligned_cols=40 Identities=23% Similarity=0.340 Sum_probs=24.5
Q ss_pred CCCCCcc-EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 1 MADNSKL-QIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 1 ~~~~~~~-~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
|...++| +|++. ++.|.+ -..|+++|.++||+|+.++-..
T Consensus 5 m~~~~m~~~ilVt--GatG~i--G~~l~~~L~~~g~~V~~l~R~~ 45 (318)
T 2r6j_A 5 MEENGMKSKILIF--GGTGYI--GNHMVKGSLKLGHPTYVFTRPN 45 (318)
T ss_dssp ----CCCCCEEEE--TTTSTT--HHHHHHHHHHTTCCEEEEECTT
T ss_pred ccccCCCCeEEEE--CCCchH--HHHHHHHHHHCCCcEEEEECCC
Confidence 4443333 66665 333433 2578899999999999887654
No 247
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=35.05 E-value=44 Score=27.88 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=30.8
Q ss_pred cEEEEe--cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 7 LQIAMF--PWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 7 ~~il~~--~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
||++.+ +-++.|=..-..+||..|+++|++|.++-.+.
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~ 40 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDP 40 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 455544 44577999999999999999999999998763
No 248
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=35.03 E-value=19 Score=32.72 Aligned_cols=42 Identities=10% Similarity=0.031 Sum_probs=30.8
Q ss_pred CCccEEEEecCCCc----cCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 011765 4 NSKLQIAMFPWLAF----GHMIPWLELAKLIAQKGHKIFFISTPRN 45 (478)
Q Consensus 4 ~~~~~il~~~~~~~----gH~~p~l~La~~L~~rGh~Vt~~~~~~~ 45 (478)
+.+|||+++..+-. --+.-...++++|.++||+|..+.....
T Consensus 1 ~~~m~v~vl~gg~s~e~~vs~~s~~~v~~al~~~g~~v~~i~~~~~ 46 (307)
T 3r5x_A 1 SNAMRIGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEK 46 (307)
T ss_dssp CCCEEEEEEECCSHHHHHHHHHHHHHHHHHSCTTTEEEEEEECSSG
T ss_pred CCCcEEEEEeCCCCcchHhHHHHHHHHHHHHHHCCCEEEEEcccCc
Confidence 35799998875532 1234567889999999999998887643
No 249
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=34.69 E-value=35 Score=25.29 Aligned_cols=33 Identities=12% Similarity=0.125 Sum_probs=24.5
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCC-CeEEEEeCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKG-HKIFFISTP 43 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rG-h~Vt~~~~~ 43 (478)
+++|+++..+..| ..+++.|.++| ++|+++...
T Consensus 5 ~~~v~I~G~G~iG-----~~~~~~l~~~g~~~v~~~~r~ 38 (118)
T 3ic5_A 5 RWNICVVGAGKIG-----QMIAALLKTSSNYSVTVADHD 38 (118)
T ss_dssp CEEEEEECCSHHH-----HHHHHHHHHCSSEEEEEEESC
T ss_pred cCeEEEECCCHHH-----HHHHHHHHhCCCceEEEEeCC
Confidence 5688888553334 46899999999 999887754
No 250
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=34.64 E-value=61 Score=18.68 Aligned_cols=29 Identities=7% Similarity=0.013 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHhc
Q 011765 416 NSVAESLRLVLVEEKGQIYRDKAKEMKGLFG 446 (478)
Q Consensus 416 ~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~ 446 (478)
.+|.+.|++++.. +......+.+++..+.
T Consensus 4 nQLE~KVEeLl~~--~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 4 KQLKAKVEELKSK--LWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH--hHHHHHHHHHHHHHhc
Confidence 4788999999974 6788889999988764
No 251
>2w36_A Endonuclease V; hypoxanthine, endonuclease, endonucleasev, hydrolase, inosine, DNA damage, DNA repair; HET: BRU; 2.10A {Thermotoga maritima} PDB: 2w35_A 3hd0_A
Probab=34.40 E-value=59 Score=28.15 Aligned_cols=38 Identities=21% Similarity=0.170 Sum_probs=25.4
Q ss_pred HHHHHhhc--CCCEEEEcCCccc-------HHHHHHHhCCCeEEEec
Q 011765 102 MAKLLQSL--APDWLLFDFAAYW-------LPARARELGIPSGFFSI 139 (478)
Q Consensus 102 l~~ll~~~--~pD~vI~D~~~~~-------~~~~A~~lgIP~i~~~~ 139 (478)
+.+++++. +||+|++|..... |..+.-.+++|.|.+.=
T Consensus 93 ~l~al~~L~~~PdlllvDG~Gi~HpR~~GlA~HlGv~l~~PtIGVAK 139 (225)
T 2w36_A 93 FLKAWEKLRTKPDVVVFDGQGLAHPRKLGIASHMGLFIEIPTIGVAK 139 (225)
T ss_dssp HHHHHTTCCSCCSEEEEESCSSSSTTSCCHHHHHHHHHTSCEEEEES
T ss_pred HHHHHHhcCCCCCEEEEeCeEEEcCCCCCchhhhhhhhCCCEEEEEe
Confidence 34444443 7999999975442 44556667999998843
No 252
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=34.29 E-value=40 Score=31.56 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=21.8
Q ss_pred CCCceeeeec-cChhhHHHHHHhCCcEecccc
Q 011765 354 HDSVGGFLTH-AGWSSVVEALQFGMPLIVLTC 384 (478)
Q Consensus 354 ~~~~~~~ItH-gG~~s~~eal~~GvP~l~~P~ 384 (478)
++++ +|+| .+......|-..|+|++.+-.
T Consensus 114 ~PD~--Vv~~~~~~~~~~aa~~~giP~v~~~~ 143 (391)
T 3tsa_A 114 RPSV--LLVDVCALIGRVLGGLLDLPVVLHRW 143 (391)
T ss_dssp CCSE--EEEETTCHHHHHHHHHTTCCEEEECC
T ss_pred CCCE--EEeCcchhHHHHHHHHhCCCEEEEec
Confidence 5676 7766 666677778899999988743
No 253
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=34.25 E-value=31 Score=29.28 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=24.5
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
|||++.- +.|-+ -..|+++|.++||+|+.++-..
T Consensus 1 M~ilItG--atG~i--G~~l~~~L~~~g~~V~~~~R~~ 34 (219)
T 3dqp_A 1 MKIFIVG--STGRV--GKSLLKSLSTTDYQIYAGARKV 34 (219)
T ss_dssp CEEEEES--TTSHH--HHHHHHHHTTSSCEEEEEESSG
T ss_pred CeEEEEC--CCCHH--HHHHHHHHHHCCCEEEEEECCc
Confidence 6777664 23322 2588999999999999988654
No 254
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=34.19 E-value=2.1e+02 Score=24.42 Aligned_cols=102 Identities=18% Similarity=0.126 Sum_probs=52.7
Q ss_pred hhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEec
Q 011765 265 RSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTS 344 (478)
Q Consensus 265 ~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~ 344 (478)
.++-++|...+ ..+||.|... -......++....+-+.|-++..... ...++.. ....+.+++
T Consensus 35 ~~lg~~LA~~G---~~vVsGGg~~----GiM~aa~~gAl~~GG~tiGVlP~~~~-----~~e~~~~-----~~~~~~~~~ 97 (215)
T 2a33_A 35 VDLGNELVSRN---IDLVYGGGSI----GLMGLVSQAVHDGGRHVIGIIPKTLM-----PRELTGE-----TVGEVRAVA 97 (215)
T ss_dssp HHHHHHHHHTT---CEEEECCCSS----HHHHHHHHHHHHTTCCEEEEEESSCC------------------CCEEEEES
T ss_pred HHHHHHHHHCC---CEEEECCChh----hHhHHHHHHHHHcCCcEEEEcchHhc-----chhhccC-----CCCceeecC
Confidence 34555555543 6666665421 23444555555556666666543211 1111110 011234445
Q ss_pred cCCh-hhhhc-CCCceeeeeccChhhHHHHHH---------hCCcEecccc
Q 011765 345 WAPQ-LAILA-HDSVGGFLTHAGWSSVVEALQ---------FGMPLIVLTC 384 (478)
Q Consensus 345 ~vpq-~~vL~-~~~~~~~ItHgG~~s~~eal~---------~GvP~l~~P~ 384 (478)
..+. ..++. .++ ..++--||.||+-|... +++|++.+-.
T Consensus 98 ~f~~Rk~~~~~~sd-a~VvlpGG~GTLdElfE~lt~~qlg~~~kPvvll~~ 147 (215)
T 2a33_A 98 DMHQRKAEMAKHSD-AFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 147 (215)
T ss_dssp SHHHHHHHHHHTCS-EEEECSCCHHHHHHHHHHHHHHHTTSCCCCEEEECG
T ss_pred CHHHHHHHHHHhCC-EEEEeCCCCchHHHHHHHHHHHHhCCCCCCeEEecC
Confidence 5554 33443 344 35778899999988863 3899998864
No 255
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=34.18 E-value=36 Score=30.84 Aligned_cols=34 Identities=18% Similarity=0.129 Sum_probs=27.1
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
++|||.|+-.+..|. .+|+.|.+.||+|+++...
T Consensus 2 ~m~~I~iiG~G~mG~-----~~a~~l~~~G~~V~~~d~~ 35 (302)
T 2h78_A 2 HMKQIAFIGLGHMGA-----PMATNLLKAGYLLNVFDLV 35 (302)
T ss_dssp -CCEEEEECCSTTHH-----HHHHHHHHTTCEEEEECSS
T ss_pred CCCEEEEEeecHHHH-----HHHHHHHhCCCeEEEEcCC
Confidence 468999998777764 6789999999999987543
No 256
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Probab=34.02 E-value=27 Score=30.76 Aligned_cols=34 Identities=12% Similarity=0.210 Sum_probs=25.0
Q ss_pred CCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011765 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFIST 42 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~ 42 (478)
|++|||.|+-.+..| ..+++.|.+.||+|+++..
T Consensus 1 ~~~m~i~iiG~G~mG-----~~~a~~l~~~g~~v~~~~~ 34 (259)
T 2ahr_A 1 SNAMKIGIIGVGKMA-----SAIIKGLKQTPHELIISGS 34 (259)
T ss_dssp --CCEEEEECCSHHH-----HHHHHHHTTSSCEEEEECS
T ss_pred CCccEEEEECCCHHH-----HHHHHHHHhCCCeEEEECC
Confidence 457899999766555 3578889999999887654
No 257
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=33.70 E-value=73 Score=24.26 Aligned_cols=39 Identities=18% Similarity=0.161 Sum_probs=25.0
Q ss_pred HHHHHhhcCCCEEEEcCCcc--cHHHHHHHh-------CCCeEEEecc
Q 011765 102 MAKLLQSLAPDWLLFDFAAY--WLPARAREL-------GIPSGFFSIF 140 (478)
Q Consensus 102 l~~ll~~~~pD~vI~D~~~~--~~~~~A~~l-------gIP~i~~~~~ 140 (478)
..+.++...||+||.|...+ .+..+.+.+ .+|+|.+...
T Consensus 39 al~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~ 86 (138)
T 3c3m_A 39 CLEALNATPPDLVLLDIMMEPMDGWETLERIKTDPATRDIPVLMLTAK 86 (138)
T ss_dssp HHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEESS
T ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEECC
Confidence 34455667899999997654 344444333 5788877553
No 258
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=33.60 E-value=83 Score=27.64 Aligned_cols=39 Identities=13% Similarity=-0.005 Sum_probs=27.8
Q ss_pred ccEEEEecCCCc----------cC-HHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 6 KLQIAMFPWLAF----------GH-MIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 6 ~~~il~~~~~~~----------gH-~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
++|||++..... |- ..=++.-...|.+.|++|+++++..
T Consensus 9 mkkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~~aSp~g 58 (247)
T 3n7t_A 9 PRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAAGFEVDVASETG 58 (247)
T ss_dssp CSEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 358988755531 22 4447777889999999999999753
No 259
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=33.57 E-value=36 Score=30.90 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=25.1
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
++|+|++.. +.|.+ -..|+++|.++||+|+.++-..
T Consensus 3 ~~~~ilVtG--atG~i--G~~l~~~L~~~g~~V~~~~R~~ 38 (321)
T 3c1o_A 3 HMEKIIIYG--GTGYI--GKFMVRASLSFSHPTFIYARPL 38 (321)
T ss_dssp -CCCEEEET--TTSTT--HHHHHHHHHHTTCCEEEEECCC
T ss_pred cccEEEEEc--CCchh--HHHHHHHHHhCCCcEEEEECCc
Confidence 456777663 34444 2468899999999999987654
No 260
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}
Probab=33.49 E-value=44 Score=27.80 Aligned_cols=34 Identities=12% Similarity=0.181 Sum_probs=23.5
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
+|||+++.- +.|.+ -..+++.|. +||+|+++...
T Consensus 2 ~kM~vlVtG--asg~i--G~~~~~~l~-~g~~V~~~~r~ 35 (202)
T 3d7l_A 2 NAMKILLIG--ASGTL--GSAVKERLE-KKAEVITAGRH 35 (202)
T ss_dssp CSCEEEEET--TTSHH--HHHHHHHHT-TTSEEEEEESS
T ss_pred CCcEEEEEc--CCcHH--HHHHHHHHH-CCCeEEEEecC
Confidence 578866653 33333 367899999 99999987643
No 261
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=33.45 E-value=35 Score=33.62 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=27.8
Q ss_pred HHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEE
Q 011765 101 PMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFF 137 (478)
Q Consensus 101 ~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~ 137 (478)
.+.+++++.+||++|... ....+|+++|||++.+
T Consensus 408 el~~~i~~~~pDL~ig~~---~~~~ia~k~gIP~~~~ 441 (492)
T 3u7q_A 408 EFEEFVKRIKPDLIGSGI---KEKFIFQKMGIPFREM 441 (492)
T ss_dssp HHHHHHHHHCCSEEEECH---HHHHHHHHTTCCEEES
T ss_pred HHHHHHHhcCCcEEEeCc---chhHHHHHcCCCEEec
Confidence 466677788999999973 4578999999999965
No 262
>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*
Probab=33.44 E-value=35 Score=31.14 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=26.8
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFIS 41 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~ 41 (478)
.+.||.|+-.+..|. ++|+.|.+.||+|+++-
T Consensus 2 ~M~kIgfIGlG~MG~-----~mA~~L~~~G~~v~v~d 33 (300)
T 3obb_A 2 HMKQIAFIGLGHMGA-----PMATNLLKAGYLLNVFD 33 (300)
T ss_dssp -CCEEEEECCSTTHH-----HHHHHHHHTTCEEEEEC
T ss_pred CcCEEEEeeehHHHH-----HHHHHHHhCCCeEEEEc
Confidence 356899999988884 68999999999999874
No 263
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=33.09 E-value=2e+02 Score=24.22 Aligned_cols=101 Identities=16% Similarity=0.121 Sum_probs=52.7
Q ss_pred hhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEec
Q 011765 265 RSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTS 344 (478)
Q Consensus 265 ~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~ 344 (478)
.++-++|.+++ ..+|+.|.. .-.+....++....+-+++-++..... ....|.. .-..+++++
T Consensus 43 ~~lg~~La~~g---~~lV~GGG~----~GlM~a~~~gA~~~GG~viGv~p~~l~-----~~e~~~~-----~~~~~i~~~ 105 (199)
T 3qua_A 43 AEVGSSIAARG---WTLVSGGGN----VSAMGAVAQAARAKGGHTVGVIPKALV-----HRELADV-----DAAELIVTD 105 (199)
T ss_dssp HHHHHHHHHTT---CEEEECCBC----SHHHHHHHHHHHHTTCCEEEEEEGGGT-----TTTTBCT-----TSSEEEEES
T ss_pred HHHHHHHHHCC---CEEEECCCc----cCHHHHHHHHHHHcCCcEEEEeCchhh-----hccccCC-----CCCeeEEcC
Confidence 34555665543 455555532 134455566665666666666543210 1112210 012344445
Q ss_pred cCCh-hhhh-cCCCceeeeeccChhhHHHHHH---------hCCcEeccc
Q 011765 345 WAPQ-LAIL-AHDSVGGFLTHAGWSSVVEALQ---------FGMPLIVLT 383 (478)
Q Consensus 345 ~vpq-~~vL-~~~~~~~~ItHgG~~s~~eal~---------~GvP~l~~P 383 (478)
+... ...+ .+++. .++-=||.||+-|... +++|++.+-
T Consensus 106 ~~~~Rk~~m~~~sda-~IalPGG~GTldEl~e~lt~~qlg~~~kPvvlln 154 (199)
T 3qua_A 106 TMRERKREMEHRSDA-FIALPGGIGTLEEFFEAWTAGYLGMHDKPLILLD 154 (199)
T ss_dssp SHHHHHHHHHHHCSE-EEECSCCHHHHHHHHHHHHHHHTTSCCCCEEEEC
T ss_pred CHHHHHHHHHHhcCc-cEEeCCCccHHHHHHHHHHHHHhccCCCCEEEEc
Confidence 5443 3333 34554 4667788999988743 589999875
No 264
>4hn9_A Iron complex transport system substrate-binding P; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.85A {Eubacterium eligens}
Probab=33.04 E-value=38 Score=31.27 Aligned_cols=35 Identities=14% Similarity=0.169 Sum_probs=23.6
Q ss_pred HHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEEe
Q 011765 104 KLLQSLAPDWLLFDFAAYWLPARARELGIPSGFFS 138 (478)
Q Consensus 104 ~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~~ 138 (478)
+.+.+.+||+||..........--+..|||++.+.
T Consensus 110 E~i~al~PDLIi~~~~~~~~~~~L~~~gipvv~~~ 144 (335)
T 4hn9_A 110 EACVAATPDVVFLPMKLKKTADTLESLGIKAVVVN 144 (335)
T ss_dssp HHHHHTCCSEEEEEGGGHHHHHHHHHTTCCEEEEC
T ss_pred HHHHhcCCCEEEEeCcchhHHHHHHHcCCCEEEEc
Confidence 44557799999987543222334467799999874
No 265
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=32.95 E-value=54 Score=28.88 Aligned_cols=38 Identities=11% Similarity=0.002 Sum_probs=26.1
Q ss_pred CCccEEEEecCCCc--cCHHHHHH-HHHHHHhCCCeEEEEe
Q 011765 4 NSKLQIAMFPWLAF--GHMIPWLE-LAKLIAQKGHKIFFIS 41 (478)
Q Consensus 4 ~~~~~il~~~~~~~--gH~~p~l~-La~~L~~rGh~Vt~~~ 41 (478)
..+|||+++..... |...-++. +++.|.+.|++|.++-
T Consensus 32 ~~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~id 72 (247)
T 2q62_A 32 THRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFD 72 (247)
T ss_dssp CSCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECC
T ss_pred CCCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEE
Confidence 45789988866644 55555554 5666777899988864
No 266
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=32.83 E-value=41 Score=30.37 Aligned_cols=35 Identities=14% Similarity=0.262 Sum_probs=25.1
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
+|+|++.. +.|.+ -..|+++|.++||+|+.++-..
T Consensus 4 ~~~ilVtG--atG~i--G~~l~~~L~~~g~~V~~~~R~~ 38 (313)
T 1qyd_A 4 KSRVLIVG--GTGYI--GKRIVNASISLGHPTYVLFRPE 38 (313)
T ss_dssp CCCEEEES--TTSTT--HHHHHHHHHHTTCCEEEECCSC
T ss_pred CCEEEEEc--CCcHH--HHHHHHHHHhCCCcEEEEECCC
Confidence 57777764 33433 2567899999999999887653
No 267
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=32.70 E-value=73 Score=29.70 Aligned_cols=27 Identities=11% Similarity=0.112 Sum_probs=20.2
Q ss_pred CCCceeeeec--cChhhHHHHHHhCCcEecc
Q 011765 354 HDSVGGFLTH--AGWSSVVEALQFGMPLIVL 382 (478)
Q Consensus 354 ~~~~~~~ItH--gG~~s~~eal~~GvP~l~~ 382 (478)
++++ +|+| .+.+...-|-..|+|.+.+
T Consensus 102 ~pD~--Vi~d~~~~~~~~~aA~~~giP~v~~ 130 (402)
T 3ia7_A 102 PPDL--VVYDVFPFIAGRLLAARWDRPAVRL 130 (402)
T ss_dssp CCSE--EEEESTTHHHHHHHHHHHTCCEEEE
T ss_pred CCCE--EEECchHHHHHHHHHHhhCCCEEEE
Confidence 4565 8887 5556667778899999876
No 268
>3ono_A Ribose/galactose isomerase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.75A {Vibrio parahaemolyticus}
Probab=32.66 E-value=50 Score=28.25 Aligned_cols=39 Identities=18% Similarity=0.264 Sum_probs=29.0
Q ss_pred CCccEEEEecCCCccCHHHHH--HHHHHHHhCCCeEEEEeC
Q 011765 4 NSKLQIAMFPWLAFGHMIPWL--ELAKLIAQKGHKIFFIST 42 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l--~La~~L~~rGh~Vt~~~~ 42 (478)
+++|||.+.+=.++.-=++++ .|.+.|.++||+|+=+++
T Consensus 1 ~~~MkIaigsDha~~lK~~~i~~~l~~~L~~~G~eV~D~G~ 41 (214)
T 3ono_A 1 SNAMKIALMMENSQAAKNAMVAGELNSVAGGLGHDVFNVGM 41 (214)
T ss_dssp -CCCEEEECCCGGGGGGHHHHHHHHHHHHHHTTCEEEECSC
T ss_pred CCccEEEEECCCcHHHHChhHHHHHHHHHHHCCCEEEEcCC
Confidence 357999998776644444455 799999999999987664
No 269
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=32.39 E-value=51 Score=27.38 Aligned_cols=37 Identities=11% Similarity=0.269 Sum_probs=25.8
Q ss_pred ccEEEEecCCCccCHHHHHH-HHHHHHh-CCCeEEEEeC
Q 011765 6 KLQIAMFPWLAFGHMIPWLE-LAKLIAQ-KGHKIFFIST 42 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~-La~~L~~-rGh~Vt~~~~ 42 (478)
+|||+++....+|+..-+.. +++.|.+ .|++|.++.-
T Consensus 1 Mmkilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l 39 (198)
T 3b6i_A 1 MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRV 39 (198)
T ss_dssp -CEEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEEC
T ss_pred CCeEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEc
Confidence 36898887777788776554 5666766 7888877654
No 270
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=32.35 E-value=46 Score=32.44 Aligned_cols=34 Identities=24% Similarity=0.217 Sum_probs=28.0
Q ss_pred HHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEE
Q 011765 101 PMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFF 137 (478)
Q Consensus 101 ~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~ 137 (478)
.+.+++++.+||++|.+. .+..+|+++|||++.+
T Consensus 376 ~l~~~i~~~~pDl~ig~~---~~~~~a~k~gip~~~~ 409 (458)
T 1mio_B 376 DVHQWIKNEGVDLLISNT---YGKFIAREENIPFVRF 409 (458)
T ss_dssp HHHHHHHHSCCSEEEESG---GGHHHHHHHTCCEEEC
T ss_pred HHHHHHHhcCCCEEEeCc---chHHHHHHcCCCEEEe
Confidence 466777788999999885 3577899999999976
No 271
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=32.25 E-value=53 Score=26.50 Aligned_cols=37 Identities=5% Similarity=0.099 Sum_probs=27.9
Q ss_pred cEEEEecCCCccCHHHHHH-HHHHHHhCCCeEEEEeCC
Q 011765 7 LQIAMFPWLAFGHMIPWLE-LAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~-La~~L~~rGh~Vt~~~~~ 43 (478)
|||+++-+..+|+..-+.. |++.|...|++|.++.-.
T Consensus 1 Mkv~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~ 38 (161)
T 3hly_A 1 MSVLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLR 38 (161)
T ss_dssp -CEEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETT
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 6788877777899887654 688888899998876543
No 272
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=32.18 E-value=36 Score=31.61 Aligned_cols=33 Identities=18% Similarity=0.150 Sum_probs=26.3
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
+|||+++..+..| ..+|..|.+.||+|+++...
T Consensus 4 ~mki~iiG~G~~G-----~~~a~~L~~~g~~V~~~~r~ 36 (359)
T 1bg6_A 4 SKTYAVLGLGNGG-----HAFAAYLALKGQSVLAWDID 36 (359)
T ss_dssp CCEEEEECCSHHH-----HHHHHHHHHTTCEEEEECSC
T ss_pred cCeEEEECCCHHH-----HHHHHHHHhCCCEEEEEeCC
Confidence 5899999776666 34788899999999988653
No 273
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=32.10 E-value=76 Score=24.81 Aligned_cols=38 Identities=24% Similarity=0.194 Sum_probs=24.4
Q ss_pred HHHHhhcCCCEEEEcCCcc--cHHHHHHH-------hCCCeEEEecc
Q 011765 103 AKLLQSLAPDWLLFDFAAY--WLPARARE-------LGIPSGFFSIF 140 (478)
Q Consensus 103 ~~ll~~~~pD~vI~D~~~~--~~~~~A~~-------lgIP~i~~~~~ 140 (478)
.+.+++.+||+||.|...+ .+..+++. -++|+|.+...
T Consensus 44 l~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~ 90 (154)
T 3gt7_A 44 VRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTIL 90 (154)
T ss_dssp HHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECC
T ss_pred HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEEEECC
Confidence 3445667899999997544 34444332 36788877643
No 274
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=32.06 E-value=82 Score=28.62 Aligned_cols=39 Identities=5% Similarity=-0.121 Sum_probs=29.3
Q ss_pred ccEEEEecCCCcc-C---HHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 6 KLQIAMFPWLAFG-H---MIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 6 ~~~il~~~~~~~g-H---~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
++||+++..+-.+ | +.-...++++|.++||+|+.+.+..
T Consensus 13 ~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~ 55 (317)
T 4eg0_A 13 FGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAE 55 (317)
T ss_dssp GCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred cceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 5788888765332 2 3467899999999999999988543
No 275
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=32.06 E-value=2e+02 Score=23.26 Aligned_cols=41 Identities=17% Similarity=0.087 Sum_probs=26.5
Q ss_pred CCccEEEEe-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 4 NSKLQIAMF-PWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 4 ~~~~~il~~-~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
+-+|||=+. |+...........++++|.++.+.+.++.+-.
T Consensus 2 ~~M~kIYLAGP~Fs~~q~~~~~~l~~~L~~~~~g~~v~~P~~ 43 (162)
T 3ehd_A 2 NAMTKIYFAGPLFSQADLRYNAYLVEQIRQLDKTIDLYLPQE 43 (162)
T ss_dssp --CEEEEEESCCSSHHHHHHHHHHHHHHHTTCTTEEEECGGG
T ss_pred CCccEEEEECCCCCHHHHHHHHHHHHHHHhcCCCCEEECCCc
Confidence 447787554 55555788888889999998743455555443
No 276
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=32.04 E-value=2.8e+02 Score=24.86 Aligned_cols=104 Identities=9% Similarity=0.007 Sum_probs=58.4
Q ss_pred CCccEEEEecCCCccCHHHHHHHHHHHHhCC--CeEEEEeCCC---ccccCCCCCCCCCCCeEEEEecCCCCCCCCCCcc
Q 011765 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQKG--HKIFFISTPR---NIDRLPRLPQNLASMIQFVKISLPHVDNLRENAE 78 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rG--h~Vt~~~~~~---~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~ 78 (478)
..|+||+++..+. || -+.+|.++-.... .+|..+.+.. ..+..++.| +.+..+| ... .
T Consensus 87 ~~~~ri~vl~Sg~-g~--nl~~ll~~~~~g~l~~~i~~Visn~p~~~~~~A~~~g------Ip~~~~~----~~~-~--- 149 (288)
T 3obi_A 87 ETRRKVMLLVSQS-DH--CLADILYRWRVGDLHMIPTAIVSNHPRETFSGFDFGD------IPFYHFP----VNK-D--- 149 (288)
T ss_dssp TSCEEEEEEECSC-CH--HHHHHHHHHHTTSSCEEEEEEEESSCGGGSCCTTTTT------CCEEECC----CCT-T---
T ss_pred CCCcEEEEEEcCC-CC--CHHHHHHHHHCCCCCeEEEEEEcCCChhHHHHHHHcC------CCEEEeC----CCc-c---
Confidence 3578987766544 55 3455555554432 4666555433 444555555 7777765 110 0
Q ss_pred ccCCCChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCc-ccHHHHHHHhCCCeEEEec
Q 011765 79 ATIDLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAA-YWLPARARELGIPSGFFSI 139 (478)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~-~~~~~~A~~lgIP~i~~~~ 139 (478)
. + ....+.+.+++++.+||+||.=.+. .-...+-+...-.++-+++
T Consensus 150 -----~-------r---~~~~~~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~~~iNiHp 196 (288)
T 3obi_A 150 -----T-------R---RQQEAAITALIAQTHTDLVVLARYMQILSDEMSARLAGRCINIHH 196 (288)
T ss_dssp -----T-------H---HHHHHHHHHHHHHHTCCEEEESSCCSCCCHHHHHHTTTSEEEEEE
T ss_pred -----c-------H---HHHHHHHHHHHHhcCCCEEEhhhhhhhCCHHHHhhhcCCeEEeCc
Confidence 0 0 1123466777888899999987554 2334444555556666644
No 277
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=31.78 E-value=33 Score=33.76 Aligned_cols=34 Identities=15% Similarity=-0.060 Sum_probs=27.5
Q ss_pred HHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEE
Q 011765 101 PMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFF 137 (478)
Q Consensus 101 ~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~ 137 (478)
.+.+++++.+||++|... .+..+|+++|||++.+
T Consensus 392 el~~~i~~~~pDL~ig~~---~~~~~a~k~gIP~~~~ 425 (483)
T 3pdi_A 392 VLLKTVDEYQADILIAGG---RNMYTALKGRVPFLDI 425 (483)
T ss_dssp HHHHHHHHTTCSEEECCG---GGHHHHHHTTCCBCCC
T ss_pred HHHHHHHhcCCCEEEECC---chhHHHHHcCCCEEEe
Confidence 566777788999999874 4667899999999855
No 278
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=31.78 E-value=3.6e+02 Score=25.98 Aligned_cols=151 Identities=9% Similarity=-0.067 Sum_probs=71.5
Q ss_pred hcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChh
Q 011765 270 WLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQL 349 (478)
Q Consensus 270 ~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~ 349 (478)
|++-. ++++++|..|.++ ...++.|.+.|.++.++-. . ..+.+.+-....++....--.+.
T Consensus 7 ~~~l~-~~~vlVvGgG~va-------~~k~~~L~~~ga~V~vi~~-~----------~~~~~~~l~~~~~i~~~~~~~~~ 67 (457)
T 1pjq_A 7 FCQLR-DRDCLIVGGGDVA-------ERKARLLLEAGARLTVNAL-T----------FIPQFTVWANEGMLTLVEGPFDE 67 (457)
T ss_dssp EECCB-TCEEEEECCSHHH-------HHHHHHHHHTTBEEEEEES-S----------CCHHHHHHHTTTSCEEEESSCCG
T ss_pred EEECC-CCEEEEECCCHHH-------HHHHHHHHhCcCEEEEEcC-C----------CCHHHHHHHhcCCEEEEECCCCc
Confidence 34433 3568888877655 3344555567777554432 1 11222221121233222111223
Q ss_pred hhhcCCCceeeeeccChhh-----HHHHHHhCCcE--eccccccchhhHHHHHhhcC--eEEEeeccCCCCcccHHHHHH
Q 011765 350 AILAHDSVGGFLTHAGWSS-----VVEALQFGMPL--IVLTCYADQGLNAKLLEEKQ--IVELIPRDEGDGFFTRNSVAE 420 (478)
Q Consensus 350 ~vL~~~~~~~~ItHgG~~s-----~~eal~~GvP~--l~~P~~~DQ~~na~~v~~~g--~G~~l~~~~~~~~~~~~~l~~ 420 (478)
+.|..+++ +|..-|.-. ..+|-..|+|+ +--|-..+...-| .+.+.+ +|+. ...++ ..-+..|++
T Consensus 68 ~~l~~~~l--Vi~at~~~~~n~~i~~~a~~~~i~vn~~d~~e~~~~~~pa-~~~~~~l~iaIs--T~Gks-p~la~~ir~ 141 (457)
T 1pjq_A 68 TLLDSCWL--AIAATDDDTVNQRVSDAAESRRIFCNVVDAPKAASFIMPS-IIDRSPLMVAVS--SGGTS-PVLARLLRE 141 (457)
T ss_dssp GGGTTCSE--EEECCSCHHHHHHHHHHHHHTTCEEEETTCTTSSSEECCE-EEEETTEEEEEE--CTTSC-HHHHHHHHH
T ss_pred cccCCccE--EEEcCCCHHHHHHHHHHHHHcCCEEEECCCcccCceEeee-EEEeCCeEEEEE--CCCCC-hHHHHHHHH
Confidence 34555565 887777654 34566679997 3333222221100 001223 4444 32210 022467777
Q ss_pred HHHHHhcccchHHHHHHHHHHHHHhc
Q 011765 421 SLRLVLVEEKGQIYRDKAKEMKGLFG 446 (478)
Q Consensus 421 ~i~~ll~~~~~~~~~~~a~~~~~~~~ 446 (478)
.|+.+|... ...+.+.+.++++.++
T Consensus 142 ~ie~~l~~~-~~~~~~~~~~~R~~~~ 166 (457)
T 1pjq_A 142 KLESLLPQH-LGQVARYAGQLRARVK 166 (457)
T ss_dssp HHHHHSCTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHhcchh-HHHHHHHHHHHHHHHH
Confidence 777777521 2456666666666654
No 279
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=31.76 E-value=1.4e+02 Score=25.44 Aligned_cols=103 Identities=10% Similarity=-0.038 Sum_probs=0.0
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCcc----ccCCCCCCCCCCCeEEEEecCCCCCCCCCCcccc
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQK--GHKIFFISTPRNI----DRLPRLPQNLASMIQFVKISLPHVDNLRENAEAT 80 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~----~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~ 80 (478)
+||+++..+.-+ -+.+|.+++.+. +++|..+.+.... +...+.| +.+..++
T Consensus 1 ~riaVl~SG~Gs---~L~aLi~~~~~~~~~~~I~~Vvs~~~~~~~~~~A~~~g------Ip~~~~~-------------- 57 (209)
T 1meo_A 1 ARVAVLISGTGS---NLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAG------IPTRVIN-------------- 57 (209)
T ss_dssp CEEEEEESSSCT---THHHHHHHHHSTTCSCEEEEEEESSTTCHHHHHHHHTT------CCEEECC--------------
T ss_pred CeEEEEEECCch---HHHHHHHHHhcCCCCcEEEEEEeCCCChHHHHHHHHcC------CCEEEEC--------------
Q ss_pred CCCChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcc-cHHHHHHHhCCCeEEEecc
Q 011765 81 IDLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAY-WLPARARELGIPSGFFSIF 140 (478)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~-~~~~~A~~lgIP~i~~~~~ 140 (478)
..-...-....+.+.+.+++.+||+||.=.+.. ....+-......++-++++
T Consensus 58 --------~~~~~~r~~~~~~~~~~l~~~~~Dliv~a~y~~il~~~~l~~~~~~~iNiHpS 110 (209)
T 1meo_A 58 --------HKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPS 110 (209)
T ss_dssp --------GGGSSSHHHHHHHHHHHHHHTTCCEEEEESCCSCCCHHHHHHTTTSEEEEESS
T ss_pred --------ccccCchhhhhHHHHHHHHhcCCCEEEEcchhhhCCHHHHhhhcCCEEEEccC
No 280
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=31.66 E-value=60 Score=26.82 Aligned_cols=34 Identities=24% Similarity=0.251 Sum_probs=24.8
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
|+|++.- +.|.+ -..|+++|.++||+|+.++...
T Consensus 4 ~~ilVtG--atG~i--G~~l~~~l~~~g~~V~~~~r~~ 37 (206)
T 1hdo_A 4 KKIAIFG--ATGQT--GLTTLAQAVQAGYEVTVLVRDS 37 (206)
T ss_dssp CEEEEES--TTSHH--HHHHHHHHHHTTCEEEEEESCG
T ss_pred CEEEEEc--CCcHH--HHHHHHHHHHCCCeEEEEEeCh
Confidence 6777763 33433 3678999999999999987654
No 281
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=31.66 E-value=1.1e+02 Score=28.87 Aligned_cols=35 Identities=23% Similarity=0.167 Sum_probs=25.8
Q ss_pred eEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEec
Q 011765 279 VVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKK 315 (478)
Q Consensus 279 ~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 315 (478)
+++++.||.+ .-.-+..++.+|.+.|+++.+....
T Consensus 3 Ili~~~gt~G--hv~p~~~La~~L~~~Gh~V~v~~~~ 37 (404)
T 3h4t_A 3 VLITGCGSRG--DTEPLVALAARLRELGADARMCLPP 37 (404)
T ss_dssp EEEEEESSHH--HHHHHHHHHHHHHHTTCCEEEEECG
T ss_pred EEEEeCCCCc--cHHHHHHHHHHHHHCCCeEEEEeCH
Confidence 6778888754 3455666888898899998887653
No 282
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=31.62 E-value=60 Score=29.12 Aligned_cols=39 Identities=8% Similarity=-0.012 Sum_probs=28.7
Q ss_pred ccEEEEecCCCc-cCHH---HHHHHHHHHHhCCCeEEEEeCCC
Q 011765 6 KLQIAMFPWLAF-GHMI---PWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 6 ~~~il~~~~~~~-gH~~---p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
+|||+++..+.. -|-. -...++++|.++||+|.++....
T Consensus 2 ~~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~~ 44 (306)
T 1iow_A 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE 44 (306)
T ss_dssp CCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred CcEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEEEEecCc
Confidence 579998875432 3322 44679999999999999988763
No 283
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=31.59 E-value=49 Score=29.42 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=25.8
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
+|+|++.. + |. =-..|++.|.++||+|+.++...
T Consensus 3 ~~~ilVtG--a-G~--iG~~l~~~L~~~g~~V~~~~r~~ 36 (286)
T 3gpi_A 3 LSKILIAG--C-GD--LGLELARRLTAQGHEVTGLRRSA 36 (286)
T ss_dssp CCCEEEEC--C-SH--HHHHHHHHHHHTTCCEEEEECTT
T ss_pred CCcEEEEC--C-CH--HHHHHHHHHHHCCCEEEEEeCCc
Confidence 57888874 3 53 34578999999999999987653
No 284
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=31.49 E-value=1.1e+02 Score=26.65 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=28.0
Q ss_pred HHHHHHHhhcCCCEEEEcCCcc--cHHHHHHH----hCCCeEEEecchH
Q 011765 100 EPMAKLLQSLAPDWLLFDFAAY--WLPARARE----LGIPSGFFSIFTA 142 (478)
Q Consensus 100 ~~l~~ll~~~~pD~vI~D~~~~--~~~~~A~~----lgIP~i~~~~~~~ 142 (478)
+.+.++-++++||++|.-.-.. +|...|++ .|||+|+++-.+.
T Consensus 54 ~~~~~~~~~~~pDfvI~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~ 102 (283)
T 1qv9_A 54 EMALDIAEDFEPDFIVYGGPNPAAPGPSKAREMLADSEYPAVIIGDAPG 102 (283)
T ss_dssp HHHHHHHHHHCCSEEEEECSCTTSHHHHHHHHHHHTSSSCEEEEEEGGG
T ss_pred HHhhhhhhhcCCCEEEEECCCCCCCCchHHHHHHHhCCCCEEEEcCCcc
Confidence 3444555788999998764333 44444443 5999999976543
No 285
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=31.49 E-value=2.8e+02 Score=24.67 Aligned_cols=34 Identities=12% Similarity=-0.072 Sum_probs=22.4
Q ss_pred ccHHHHHHHHHHHh---cccchHHHHHHHHHHHHHhc
Q 011765 413 FTRNSVAESLRLVL---VEEKGQIYRDKAKEMKGLFG 446 (478)
Q Consensus 413 ~~~~~l~~~i~~ll---~~~~~~~~~~~a~~~~~~~~ 446 (478)
.-+..|++.|+.+| .+..-..+.+.+.++++.++
T Consensus 172 ~lA~~ir~~ie~~l~~~p~~~~~~~~~~l~~~R~~ik 208 (274)
T 1kyq_A 172 RFGALVRDEIRNLFTQMGDLALEDAVVKLGELRRGIR 208 (274)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 34477888888888 41113567777777777765
No 286
>3goc_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: YES; 1.60A {Streptomyces avermitilis}
Probab=31.33 E-value=71 Score=27.81 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=26.2
Q ss_pred HHHHHHhh--cCCCEEEEcCCcc-------cHHHHHHHhCCCeEEEe
Q 011765 101 PMAKLLQS--LAPDWLLFDFAAY-------WLPARARELGIPSGFFS 138 (478)
Q Consensus 101 ~l~~ll~~--~~pD~vI~D~~~~-------~~~~~A~~lgIP~i~~~ 138 (478)
.+.+++++ .+||+|++|.+.. -|..+.-.+++|.|.+.
T Consensus 96 ~ll~al~~L~~~PdlllvDG~GiaHPRr~GlAsHlGv~l~~PtIGVA 142 (237)
T 3goc_A 96 TVLAALDALPCPPGLIVCDGYGVAHPRRFGLASHLGVLTGLPTIGVA 142 (237)
T ss_dssp HHHHHHHTSSSCCSEEEEESCSSCSTTSCCHHHHHHHHHCSCEEEEE
T ss_pred HHHHHHHhcCCCCCEEEEeCceeecCCCcchhheeeeecCCCEEeee
Confidence 34444444 4799999996432 35567778899999883
No 287
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=31.28 E-value=92 Score=29.21 Aligned_cols=39 Identities=13% Similarity=0.116 Sum_probs=33.7
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCcc
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNI 46 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (478)
-+++...++.|-..-++.+|..++.+|..|.|++.+...
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~ 114 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHAL 114 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCCh
Confidence 456678888999999999999999999999999988643
No 288
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=31.26 E-value=1.2e+02 Score=27.24 Aligned_cols=79 Identities=14% Similarity=0.080 Sum_probs=53.0
Q ss_pred CCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChhHHHHHHHHHhhhhHHHHHHHhhcCCCE
Q 011765 34 GHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDW 113 (478)
Q Consensus 34 Gh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~ 113 (478)
..+..+++++.+..+....| ++...+. ++..+.+ + .......+.+.+++.+..+
T Consensus 178 ~~~~~v~~H~af~Yf~~~yG------l~~~~~~-----~~~~~~e-----p----------s~~~l~~l~~~ik~~~v~~ 231 (286)
T 3gi1_A 178 RSKTFVTQHTAFSYLAKRFG------LKQLGIS-----GISPEQE-----P----------SPRQLKEIQDFVKEYNVKT 231 (286)
T ss_dssp SCCEEEEEESCCHHHHHHTT------CEEEEEE-----CSCC--------C----------CHHHHHHHHHHHHHTTCCE
T ss_pred CCCEEEEECCchHHHHHHCC------CeEeecc-----ccCCCCC-----C----------CHHHHHHHHHHHHHcCCCE
Confidence 34555677888888888888 7777663 2211110 1 1222336777788899999
Q ss_pred EEEcCCccc--HHHHHHHhCCCeEEEe
Q 011765 114 LLFDFAAYW--LPARARELGIPSGFFS 138 (478)
Q Consensus 114 vI~D~~~~~--~~~~A~~lgIP~i~~~ 138 (478)
|+++..... +-.+|+..|++++.+.
T Consensus 232 if~e~~~~~~~~~~la~~~g~~v~~l~ 258 (286)
T 3gi1_A 232 IFAEDNVNPKIAHAIAKSTGAKVKTLS 258 (286)
T ss_dssp EEECTTSCTHHHHHHHHTTTCEEEECC
T ss_pred EEEeCCCChHHHHHHHHHhCCeEEEec
Confidence 999987664 3478999999998763
No 289
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=31.12 E-value=92 Score=28.22 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=23.2
Q ss_pred eeeeeccChhhHHHHHH------hCCcEecccc
Q 011765 358 GGFLTHAGWSSVVEALQ------FGMPLIVLTC 384 (478)
Q Consensus 358 ~~~ItHgG~~s~~eal~------~GvP~l~~P~ 384 (478)
+++|.-||-||+.|++. .++|+.++|.
T Consensus 65 d~vv~~GGDGTl~~v~~~l~~~~~~~~l~iiP~ 97 (304)
T 3s40_A 65 DLIIVFGGDGTVFECTNGLAPLEIRPTLAIIPG 97 (304)
T ss_dssp SEEEEEECHHHHHHHHHHHTTCSSCCEEEEEEC
T ss_pred CEEEEEccchHHHHHHHHHhhCCCCCcEEEecC
Confidence 44999999999999875 5789999996
No 290
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=30.61 E-value=90 Score=22.77 Aligned_cols=39 Identities=15% Similarity=0.090 Sum_probs=24.7
Q ss_pred HHHHhhcCCCEEEEcCCcc--cHHHHHHHh-----CCCeEEEecch
Q 011765 103 AKLLQSLAPDWLLFDFAAY--WLPARAREL-----GIPSGFFSIFT 141 (478)
Q Consensus 103 ~~ll~~~~pD~vI~D~~~~--~~~~~A~~l-----gIP~i~~~~~~ 141 (478)
.+.++..+||+||.|...+ .+..+.+.+ ++|++.+....
T Consensus 40 ~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 85 (120)
T 1tmy_A 40 VEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMG 85 (120)
T ss_dssp HHHHHHHCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEEECTT
T ss_pred HHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEEEEeCCC
Confidence 3445566899999997654 344444332 58888776543
No 291
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}
Probab=30.53 E-value=32 Score=31.43 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=31.4
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc-cccCCCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRN-IDRLPRLP 53 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~-~~~~~~~g 53 (478)
+|||+++-.++.|- .+|..|. .||+|+++..... .+.+.+.|
T Consensus 2 ~mkI~IiGaGa~G~-----~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G 44 (307)
T 3ego_A 2 SLKIGIIGGGSVGL-----LCAYYLS-LYHDVTVVTRRQEQAAAIQSEG 44 (307)
T ss_dssp CCEEEEECCSHHHH-----HHHHHHH-TTSEEEEECSCHHHHHHHHHHC
T ss_pred CCEEEEECCCHHHH-----HHHHHHh-cCCceEEEECCHHHHHHHHhCC
Confidence 48999998888875 5688888 9999999987653 34444444
No 292
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=30.15 E-value=78 Score=17.85 Aligned_cols=29 Identities=7% Similarity=0.035 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHhc
Q 011765 416 NSVAESLRLVLVEEKGQIYRDKAKEMKGLFG 446 (478)
Q Consensus 416 ~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~ 446 (478)
.+|++.|++++.. +......+.++++.+.
T Consensus 3 nQLEdKVEell~~--~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 3 KQLEDKIEENTSK--IYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHh--hHHHHHHHHHHHHHhc
Confidence 4688899999874 5677888888887764
No 293
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=30.09 E-value=51 Score=33.13 Aligned_cols=43 Identities=7% Similarity=-0.085 Sum_probs=38.0
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccc
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNID 47 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 47 (478)
++.+|++.+.++..|-....-++..|..+|++|++++.....+
T Consensus 97 ~~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e 139 (579)
T 3bul_A 97 TNGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAE 139 (579)
T ss_dssp CSCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHH
Confidence 4679999999999999999999999999999999987764443
No 294
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=30.08 E-value=38 Score=29.26 Aligned_cols=41 Identities=10% Similarity=-0.013 Sum_probs=32.5
Q ss_pred CccEEEEe--cCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCCc
Q 011765 5 SKLQIAMF--PWLAFGHMIPWLELAKLIAQK-GHKIFFISTPRN 45 (478)
Q Consensus 5 ~~~~il~~--~~~~~gH~~p~l~La~~L~~r-Gh~Vt~~~~~~~ 45 (478)
++||++.+ +-++.|-..-..+||..|+++ |++|.++-.+..
T Consensus 2 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 2 NAKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp -CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred CCCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence 45666554 446779999999999999999 999999877654
No 295
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=29.99 E-value=68 Score=31.06 Aligned_cols=42 Identities=14% Similarity=0.123 Sum_probs=36.3
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccc
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNID 47 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 47 (478)
+..|+++..++.|-..-+..||..|+++|++|.++..+.++.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~ 141 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP 141 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence 456677788899999999999999999999999999877654
No 296
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}
Probab=29.97 E-value=31 Score=31.51 Aligned_cols=33 Identities=12% Similarity=0.322 Sum_probs=26.0
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFIST 42 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~ 42 (478)
.+|||.|+-.+..| ..+|+.|+++||+|+++..
T Consensus 8 ~~~~IgiIG~G~mG-----~~~A~~l~~~G~~V~~~dr 40 (306)
T 3l6d_A 8 FEFDVSVIGLGAMG-----TIMAQVLLKQGKRVAIWNR 40 (306)
T ss_dssp CSCSEEEECCSHHH-----HHHHHHHHHTTCCEEEECS
T ss_pred CCCeEEEECCCHHH-----HHHHHHHHHCCCEEEEEeC
Confidence 36899999776555 4689999999999988643
No 297
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=29.67 E-value=85 Score=23.71 Aligned_cols=40 Identities=25% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCEEEEcCCcc---cHHHHHHHh----CCCeEEEec
Q 011765 100 EPMAKLLQSLAPDWLLFDFAAY---WLPARAREL----GIPSGFFSI 139 (478)
Q Consensus 100 ~~l~~ll~~~~pD~vI~D~~~~---~~~~~A~~l----gIP~i~~~~ 139 (478)
....+.+++.+||+||.|...+ .+..+.+.+ ++|+|.+..
T Consensus 44 ~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~ii~ls~ 90 (140)
T 3cg0_A 44 EEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAGCNLPIIFITS 90 (140)
T ss_dssp HHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHHSCCCEEEEEC
T ss_pred HHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhCCCCCEEEEec
No 298
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=29.42 E-value=43 Score=33.22 Aligned_cols=34 Identities=15% Similarity=0.241 Sum_probs=26.5
Q ss_pred HHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEE
Q 011765 101 PMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFF 137 (478)
Q Consensus 101 ~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~ 137 (478)
.+.+++++.+||++|.+. ....+|+++|||++.+
T Consensus 363 el~~~i~~~~pDl~ig~~---~~r~~a~k~gip~~~i 396 (511)
T 2xdq_B 363 VVGDAIARVEPAAIFGTQ---MERHVGKRLNIPCGVI 396 (511)
T ss_dssp HHHHHHHHHCCSEEEECH---HHHHHHHHHTCCEEEC
T ss_pred HHHHHHHhcCCCEEEecc---chHHHHHhcCCCeEec
Confidence 455666677899999873 4667889999999976
No 299
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=29.39 E-value=40 Score=30.43 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=25.5
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRN 45 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~ 45 (478)
++|+|++..- .|.+ -..|++.|.++||+|+.++....
T Consensus 6 ~~~~vlVtGa--tG~i--G~~l~~~L~~~g~~V~~~~r~~~ 42 (321)
T 3vps_A 6 LKHRILITGG--AGFI--GGHLARALVASGEEVTVLDDLRV 42 (321)
T ss_dssp -CCEEEEETT--TSHH--HHHHHHHHHHTTCCEEEECCCSS
T ss_pred CCCeEEEECC--CChH--HHHHHHHHHHCCCEEEEEecCCc
Confidence 3577777643 3333 24789999999999999875543
No 300
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=29.38 E-value=47 Score=26.07 Aligned_cols=37 Identities=11% Similarity=-0.026 Sum_probs=25.4
Q ss_pred cEEEEecCCCccCHHHHH-HHHHHHHhCCCeEEEEeCC
Q 011765 7 LQIAMFPWLAFGHMIPWL-ELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l-~La~~L~~rGh~Vt~~~~~ 43 (478)
|||+++-...+|+..-+. .|++.|.++|++|.++.-.
T Consensus 1 mki~iiy~S~~Gnt~~~a~~i~~~l~~~g~~v~~~~~~ 38 (147)
T 1f4p_A 1 PKALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAA 38 (147)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHHHTCEEEEEEGG
T ss_pred CeEEEEEECCcCHHHHHHHHHHHHHHhcCCeeEEEehh
Confidence 678777666678766544 3566677789999876543
No 301
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0
Probab=29.37 E-value=57 Score=28.59 Aligned_cols=40 Identities=13% Similarity=0.079 Sum_probs=26.4
Q ss_pred CCCCCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 1 MADNSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 1 ~~~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
|.-+.+||.++++..+.| + -.++|++|.++|++|+++...
T Consensus 1 M~~~~~~k~vlVTGas~g-I--G~~~a~~l~~~G~~v~~~~~~ 40 (264)
T 3i4f_A 1 MSLGRFVRHALITAGTKG-L--GKQVTEKLLAKGYSVTVTYHS 40 (264)
T ss_dssp -----CCCEEEETTTTSH-H--HHHHHHHHHHTTCEEEEEESS
T ss_pred CCcccccCEEEEeCCCch-h--HHHHHHHHHHCCCEEEEEcCC
Confidence 444556787777766542 2 368999999999999987544
No 302
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=29.27 E-value=87 Score=22.94 Aligned_cols=40 Identities=15% Similarity=0.075 Sum_probs=25.4
Q ss_pred HHHHHHhhcCCCEEEEcCCcc--cHHHHHHHh----CCCeEEEecc
Q 011765 101 PMAKLLQSLAPDWLLFDFAAY--WLPARAREL----GIPSGFFSIF 140 (478)
Q Consensus 101 ~l~~ll~~~~pD~vI~D~~~~--~~~~~A~~l----gIP~i~~~~~ 140 (478)
...++++..+||+||.|...+ .+..+++.+ ++|++.+...
T Consensus 37 ~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s~~ 82 (122)
T 1zgz_A 37 GLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILVTGR 82 (122)
T ss_dssp HHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEESS
T ss_pred HHHHHHhcCCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEECC
Confidence 344555667899999997554 355444443 5777776553
No 303
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Probab=29.26 E-value=47 Score=28.03 Aligned_cols=31 Identities=29% Similarity=0.337 Sum_probs=23.2
Q ss_pred cEEEEec-CCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011765 7 LQIAMFP-WLAFGHMIPWLELAKLIAQKGHKIFFIST 42 (478)
Q Consensus 7 ~~il~~~-~~~~gH~~p~l~La~~L~~rGh~Vt~~~~ 42 (478)
|||+++- .+..| ..+++.|.++||+|+++..
T Consensus 1 m~i~iiGa~G~~G-----~~ia~~l~~~g~~V~~~~r 32 (212)
T 1jay_A 1 MRVALLGGTGNLG-----KGLALRLATLGHEIVVGSR 32 (212)
T ss_dssp CEEEEETTTSHHH-----HHHHHHHHTTTCEEEEEES
T ss_pred CeEEEEcCCCHHH-----HHHHHHHHHCCCEEEEEeC
Confidence 6888875 44444 4678999999999998754
No 304
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=29.26 E-value=56 Score=26.65 Aligned_cols=38 Identities=13% Similarity=0.302 Sum_probs=28.9
Q ss_pred EEEEecCCCc---cCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 011765 8 QIAMFPWLAF---GHMIPWLELAKLIAQKGHKIFFISTPRN 45 (478)
Q Consensus 8 ~il~~~~~~~---gH~~p~l~La~~L~~rGh~Vt~~~~~~~ 45 (478)
+|+++|.-+. ---++...|++.|.++|.+|.|..++-.
T Consensus 25 ~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVA 65 (180)
T 1pno_A 25 KVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVA 65 (180)
T ss_dssp EEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTC
T ss_pred eEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEecccc
Confidence 6777664322 2356899999999999999999887753
No 305
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=29.25 E-value=45 Score=33.16 Aligned_cols=34 Identities=24% Similarity=0.394 Sum_probs=27.1
Q ss_pred HHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEE
Q 011765 101 PMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFF 137 (478)
Q Consensus 101 ~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~ 137 (478)
.+.+++++.+||++|.+. ....+|+++|||++.+
T Consensus 340 el~~~i~~~~pDL~ig~~---~~~~~a~~~giP~~~i 373 (525)
T 3aek_B 340 EVEKAIEAAAPELILGTQ---MERNIAKKLGLPCAVI 373 (525)
T ss_dssp HHHHHHHHHCCSEEEECH---HHHHHHHHHTCCEEEC
T ss_pred HHHHHHhhcCCCEEEecc---hhHHHHHHcCCCEEEe
Confidence 455667777999999883 4677889999999975
No 306
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=29.08 E-value=48 Score=28.97 Aligned_cols=35 Identities=14% Similarity=0.082 Sum_probs=23.8
Q ss_pred HHHhhcCCCEEEEcCCccc--HHHHHHHhCCCeEEEe
Q 011765 104 KLLQSLAPDWLLFDFAAYW--LPARARELGIPSGFFS 138 (478)
Q Consensus 104 ~ll~~~~pD~vI~D~~~~~--~~~~A~~lgIP~i~~~ 138 (478)
+.+.+.+||+||....... ...--+..|||++.+.
T Consensus 53 E~i~~l~PDlIi~~~~~~~~~~~~~L~~~gipvv~~~ 89 (255)
T 3md9_A 53 EGILAMKPTMLLVSELAQPSLVLTQIASSGVNVVTVP 89 (255)
T ss_dssp HHHHTTCCSEEEEETTCSCHHHHHHHHHTTCEEEEEC
T ss_pred HHHHccCCCEEEEcCCcCchhHHHHHHHcCCcEEEeC
Confidence 3445779999998865432 2334467799999873
No 307
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}
Probab=29.03 E-value=46 Score=29.85 Aligned_cols=33 Identities=12% Similarity=0.191 Sum_probs=25.5
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
.|||.|+-.+..| ..+|+.|+++||+|+++...
T Consensus 1 s~~i~iIG~G~mG-----~~~a~~l~~~G~~V~~~dr~ 33 (287)
T 3pef_A 1 SQKFGFIGLGIMG-----SAMAKNLVKAGCSVTIWNRS 33 (287)
T ss_dssp CCEEEEECCSHHH-----HHHHHHHHHTTCEEEEECSS
T ss_pred CCEEEEEeecHHH-----HHHHHHHHHCCCeEEEEcCC
Confidence 3788888766555 56789999999999987543
No 308
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=28.99 E-value=1.2e+02 Score=21.83 Aligned_cols=39 Identities=15% Similarity=0.032 Sum_probs=24.5
Q ss_pred HHHHHhhcCCCEEEEcCCcc--cHHHHHHHh-----CCCeEEEecc
Q 011765 102 MAKLLQSLAPDWLLFDFAAY--WLPARAREL-----GIPSGFFSIF 140 (478)
Q Consensus 102 l~~ll~~~~pD~vI~D~~~~--~~~~~A~~l-----gIP~i~~~~~ 140 (478)
..+.++..+||+||.|...+ .+..+.+.+ ++|++.+...
T Consensus 37 a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 82 (116)
T 3a10_A 37 ALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAY 82 (116)
T ss_dssp HHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECC
Confidence 34455667899999997554 344443332 5788877553
No 309
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=28.79 E-value=77 Score=23.31 Aligned_cols=46 Identities=9% Similarity=0.205 Sum_probs=34.4
Q ss_pred hCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhc
Q 011765 375 FGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLV 427 (478)
Q Consensus 375 ~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~ 427 (478)
..+|+|++ ..++........+.|+--.+.+- ++.++|...|+.++.
T Consensus 79 ~~~~ii~~--~~~~~~~~~~~~~~g~~~~l~kp-----~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 79 KNVPIVII--GNPDGFAQHRKLKAHADEYVAKP-----VDADQLVERAGALIG 124 (127)
T ss_dssp TTSCEEEE--ECGGGHHHHHHSTTCCSEEEESS-----CCHHHHHHHHHHHHC
T ss_pred cCCCEEEE--ecCCchhHHHHHHhCcchheeCC-----CCHHHHHHHHHHHHc
Confidence 46899998 44555566667777875566554 699999999999886
No 310
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=28.78 E-value=89 Score=23.32 Aligned_cols=37 Identities=5% Similarity=0.069 Sum_probs=22.5
Q ss_pred CCCCCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 011765 1 MADNSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFIS 41 (478)
Q Consensus 1 ~~~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~ 41 (478)
|...++++|+++- .+-.-...+.+.|.+.|++|..+.
T Consensus 1 M~~~~~~~ilivd----d~~~~~~~l~~~L~~~g~~v~~~~ 37 (132)
T 3lte_A 1 MSLKQSKRILVVD----DDQAMAAAIERVLKRDHWQVEIAH 37 (132)
T ss_dssp ------CEEEEEC----SCHHHHHHHHHHHHHTTCEEEEES
T ss_pred CCCCCCccEEEEE----CCHHHHHHHHHHHHHCCcEEEEeC
Confidence 5666678998884 455556677888888888877543
No 311
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=28.74 E-value=41 Score=26.61 Aligned_cols=37 Identities=11% Similarity=0.027 Sum_probs=28.9
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCcc
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNI 46 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (478)
-+++++.-+. =+.|++++++.|.++|.+|+++ .....
T Consensus 19 ~~~llIaGG~--GiaPl~sm~~~l~~~~~~v~l~-g~R~~ 55 (142)
T 3lyu_A 19 GKILAIGAYT--GIVEVYPIAKAWQEIGNDVTTL-HVTFE 55 (142)
T ss_dssp SEEEEEEETT--HHHHHHHHHHHHHHTTCEEEEE-EEEEG
T ss_pred CeEEEEECcC--cHHHHHHHHHHHHhcCCcEEEE-EeCCH
Confidence 4677766554 5899999999999999999998 54433
No 312
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Probab=28.74 E-value=45 Score=34.21 Aligned_cols=40 Identities=8% Similarity=-0.098 Sum_probs=25.4
Q ss_pred HHHHHHhhcCCCEEEEcCCc-ccHHHHHHHhCCCeEEEecc
Q 011765 101 PMAKLLQSLAPDWLLFDFAA-YWLPARARELGIPSGFFSIF 140 (478)
Q Consensus 101 ~l~~ll~~~~pD~vI~D~~~-~~~~~~A~~lgIP~i~~~~~ 140 (478)
.+.+.+++.+||+||.=.+. .....+-......++-++++
T Consensus 66 ~~~~~l~~~~~d~iv~~~~~~il~~~~l~~~~~~~iNiH~s 106 (660)
T 1z7e_A 66 LWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGS 106 (660)
T ss_dssp HHHHHHHHHCCSEEEEESCCSCCCHHHHTTCTTCEEEEESS
T ss_pred HHHHHHHhcCCCEEEEcCcccccCHHHHhcCCCCeEEecCC
Confidence 34566777899999976543 22333444455667777776
No 313
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=28.65 E-value=91 Score=24.20 Aligned_cols=41 Identities=10% Similarity=0.010 Sum_probs=25.7
Q ss_pred HHHHHhhcCCCEEEEcCCcc--cHHHHHHHh-----CCCeEEEecchH
Q 011765 102 MAKLLQSLAPDWLLFDFAAY--WLPARAREL-----GIPSGFFSIFTA 142 (478)
Q Consensus 102 l~~ll~~~~pD~vI~D~~~~--~~~~~A~~l-----gIP~i~~~~~~~ 142 (478)
..+.+....||+||.|...+ .+..+.+.+ ++|+|.+.....
T Consensus 43 a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~ 90 (154)
T 2rjn_A 43 ALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVISGYAD 90 (154)
T ss_dssp HHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEEECGGG
T ss_pred HHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 34455667899999997544 344333332 688888766543
No 314
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=28.61 E-value=58 Score=26.67 Aligned_cols=38 Identities=24% Similarity=0.411 Sum_probs=28.8
Q ss_pred EEEEecCCCc---cCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 011765 8 QIAMFPWLAF---GHMIPWLELAKLIAQKGHKIFFISTPRN 45 (478)
Q Consensus 8 ~il~~~~~~~---gH~~p~l~La~~L~~rGh~Vt~~~~~~~ 45 (478)
+|+++|.-+. ---++...|++.|.++|.+|.|..++-.
T Consensus 24 ~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVA 64 (184)
T 1d4o_A 24 SIIITPGYGLCAAKAQYPIADLVKMLSEQGKKVRFGIHPVA 64 (184)
T ss_dssp EEEEEECHHHHHTTTHHHHHHHHHHHHHTTCEEEEEECTTC
T ss_pred eEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEecccc
Confidence 6777664322 2346899999999999999999887753
No 315
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=28.61 E-value=57 Score=28.42 Aligned_cols=38 Identities=24% Similarity=0.181 Sum_probs=30.6
Q ss_pred cEEEEe--cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 7 LQIAMF--PWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 7 ~~il~~--~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
+|++.+ +-++.|-..-..+||..|+++|++|.++-...
T Consensus 2 ~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (260)
T 3q9l_A 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAI 41 (260)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 355444 44567999999999999999999999987665
No 316
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=28.57 E-value=49 Score=30.69 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=22.9
Q ss_pred HHHhhcCCCEEEEcCCccc-HHHHHHHhCCCeEEE
Q 011765 104 KLLQSLAPDWLLFDFAAYW-LPARARELGIPSGFF 137 (478)
Q Consensus 104 ~ll~~~~pD~vI~D~~~~~-~~~~A~~lgIP~i~~ 137 (478)
+.+.+.+||+||....... .....+.+|||++.+
T Consensus 90 E~Ilal~PDLIi~~~~~~~~~~~~~~~~GiPvv~~ 124 (346)
T 2etv_A 90 ESLITLQPDVVFITYVDRXTAXDIQEXTGIPVVVL 124 (346)
T ss_dssp HHHHHHCCSEEEEESCCHHHHHHHHHHHTSCEEEE
T ss_pred HHHhcCCCCEEEEeCCccchHHHHHHhcCCcEEEE
Confidence 3344679999998754321 223457789999987
No 317
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=28.24 E-value=16 Score=19.01 Aligned_cols=17 Identities=29% Similarity=0.712 Sum_probs=14.4
Q ss_pred ChhhHHHHHHhCCcEec
Q 011765 365 GWSSVVEALQFGMPLIV 381 (478)
Q Consensus 365 G~~s~~eal~~GvP~l~ 381 (478)
|.|++...|..|.|.++
T Consensus 1 giGa~LKVLa~~LP~li 17 (26)
T 3qrx_B 1 GIGAVLKVLTTGLPALI 17 (26)
T ss_pred CchHHHHHHHccchHHH
Confidence 67888999999998776
No 318
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=28.22 E-value=56 Score=32.46 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=25.7
Q ss_pred HHHHHHhhcCCCEEEEcCCcccHHHHHHHh-------CCCeEEE
Q 011765 101 PMAKLLQSLAPDWLLFDFAAYWLPARAREL-------GIPSGFF 137 (478)
Q Consensus 101 ~l~~ll~~~~pD~vI~D~~~~~~~~~A~~l-------gIP~i~~ 137 (478)
.+.+++++.+||++|.... +..+|+++ |||++.+
T Consensus 429 ~l~~~i~~~~pDLlig~s~---~k~~a~~~~~~~~~~giP~iri 469 (523)
T 3u7q_B 429 HLRSLVFTDKPDFMIGNSY---GKFIQRDTLHKGKEFEVPLIRI 469 (523)
T ss_dssp HHHHHHHHTCCSEEEECTT---HHHHHHHHHHHCGGGCCCEEEC
T ss_pred HHHHHHHhcCCCEEEECcc---HHHHHHHhhcccccCCCceEEe
Confidence 4556667779999999953 44567777 9999976
No 319
>1t1j_A Hypothetical protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.14.2
Probab=28.22 E-value=80 Score=24.46 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=23.2
Q ss_pred CccEEEEecCCCccCHH--------HHHHHHHHHHhCCCeEE
Q 011765 5 SKLQIAMFPWLAFGHMI--------PWLELAKLIAQKGHKIF 38 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~--------p~l~La~~L~~rGh~Vt 38 (478)
..||.++++.|-.|.-. .+-..|..|.++||.+.
T Consensus 6 ~~M~~IYIagPysg~~~n~~~~n~~~~~r~A~~l~~~G~ip~ 47 (125)
T 1t1j_A 6 GHMRKIFLACPYSHADAEVVEQRFRACNEVAATIVRAGHVVF 47 (125)
T ss_dssp -CCCEEEEECCCCCSSHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hhhhheeEECCCCCCcchHHHHHHHHHHHHHHHHHHCCCeee
Confidence 35777888888777622 34456667889999665
No 320
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=28.20 E-value=17 Score=30.53 Aligned_cols=31 Identities=23% Similarity=0.194 Sum_probs=17.8
Q ss_pred CCCCCccEEEEecCCCccCHHHHHHH-HHHHH
Q 011765 1 MADNSKLQIAMFPWLAFGHMIPWLEL-AKLIA 31 (478)
Q Consensus 1 ~~~~~~~~il~~~~~~~gH~~p~l~L-a~~L~ 31 (478)
|..+++|||+++-+..+||..-+... ++.|.
T Consensus 1 ~~~~~~~kiliiy~S~~GnT~~lA~~ia~~l~ 32 (193)
T 3d7n_A 1 MTTNSSSNTVVVYHSGYGHTHRMAEAVAEGAE 32 (193)
T ss_dssp -----CCCEEEEECCSSSHHHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEEEECCChHHHHHHHHHHHHhh
Confidence 77788899999888888886654432 44443
No 321
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=28.14 E-value=38 Score=31.75 Aligned_cols=33 Identities=33% Similarity=0.398 Sum_probs=28.0
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
+|||.++-.+..| ..+|..|++.||+|++....
T Consensus 29 ~mkI~VIGaG~mG-----~alA~~La~~G~~V~l~~r~ 61 (356)
T 3k96_A 29 KHPIAILGAGSWG-----TALALVLARKGQKVRLWSYE 61 (356)
T ss_dssp CSCEEEECCSHHH-----HHHHHHHHTTTCCEEEECSC
T ss_pred CCeEEEECccHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 6899999887776 46899999999999998865
No 322
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=27.91 E-value=1e+02 Score=23.28 Aligned_cols=38 Identities=11% Similarity=0.015 Sum_probs=0.0
Q ss_pred CCCCCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011765 1 MADNSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFIST 42 (478)
Q Consensus 1 ~~~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~ 42 (478)
|...+++||+++ ..+-.-...|.+.|.+.|++|..+.+
T Consensus 1 M~~~~~~~iLiv----dd~~~~~~~l~~~l~~~g~~v~~~~~ 38 (140)
T 3grc_A 1 MSLAPRPRILIC----EDDPDIARLLNLMLEKGGFDSDMVHS 38 (140)
T ss_dssp ----CCSEEEEE----CSCHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCCCCEEEE----cCCHHHHHHHHHHHHHCCCeEEEECC
No 323
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=27.89 E-value=1e+02 Score=23.23 Aligned_cols=37 Identities=19% Similarity=0.014 Sum_probs=29.4
Q ss_pred CccEEEEecCCCccCHHH-HHHHHHHHHhCCCeEEEEe
Q 011765 5 SKLQIAMFPWLAFGHMIP-WLELAKLIAQKGHKIFFIS 41 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p-~l~La~~L~~rGh~Vt~~~ 41 (478)
.++||+++|..|.|.-.- ...|-+.+.+.|.++.+-.
T Consensus 20 ~~kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~ 57 (113)
T 1tvm_A 20 SKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQ 57 (113)
T ss_dssp SSEEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cccEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 367899999999998774 6777888888998865443
No 324
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=27.87 E-value=3.1e+02 Score=24.50 Aligned_cols=106 Identities=12% Similarity=0.063 Sum_probs=0.0
Q ss_pred CCCccEEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEe--CCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCcc
Q 011765 3 DNSKLQIAMFPWLAFGHMIPWLELAKLIAQK--GHKIFFIS--TPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAE 78 (478)
Q Consensus 3 ~~~~~~il~~~~~~~gH~~p~l~La~~L~~r--Gh~Vt~~~--~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~ 78 (478)
...|+||+++..+. || -+.+|..+-... ..+|..+. .+......++.| +.+..+|....+.
T Consensus 87 ~~~~~ri~vl~Sg~-g~--~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~A~~~g------Ip~~~~~~~~~~r------ 151 (286)
T 3n0v_A 87 PNHRPKVVIMVSKA-DH--CLNDLLYRQRIGQLGMDVVAVVSNHPDLEPLAHWHK------IPYYHFALDPKDK------ 151 (286)
T ss_dssp TTCCCEEEEEESSC-CH--HHHHHHHHHHTTSSCCEEEEEEESSSTTHHHHHHTT------CCEEECCCBTTBH------
T ss_pred CCCCcEEEEEEeCC-CC--CHHHHHHHHHCCCCCcEEEEEEeCcHHHHHHHHHcC------CCEEEeCCCcCCH------
Q ss_pred ccCCCChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcc-cHHHHHHHhCCCeEEEecc
Q 011765 79 ATIDLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAY-WLPARARELGIPSGFFSIF 140 (478)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~-~~~~~A~~lgIP~i~~~~~ 140 (478)
....+.+.+++++.+||+||.=.+.. -...+-+...-.++-++++
T Consensus 152 -----------------~~~~~~~~~~l~~~~~Dlivla~y~~il~~~~l~~~~~~~iNiHpS 197 (286)
T 3n0v_A 152 -----------------PGQERKVLQVIEETGAELVILARYMQVLSPELCRRLDGWAINIHHS 197 (286)
T ss_dssp -----------------HHHHHHHHHHHHHHTCSEEEESSCCSCCCHHHHHHTTTSEEEEEEC
T ss_pred -----------------HHHHHHHHHHHHhcCCCEEEecccccccCHHHHhhhcCCeEEeccc
No 325
>2wm1_A 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; neurological disorders, metal-dependent amidohydrolase, kynurenine pathway; HET: 13P; 2.01A {Homo sapiens}
Probab=27.87 E-value=62 Score=29.68 Aligned_cols=71 Identities=15% Similarity=0.149 Sum_probs=38.2
Q ss_pred HHHHhhcCCCeeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCccc---CCCHHHHHHHHHHHHhCCCC
Q 011765 232 KLLEQLHRKPVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEA---KPSQEELTEIALGLELSKLP 308 (478)
Q Consensus 232 ~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~---~~~~~~~~~~~~al~~~~~~ 308 (478)
.......|.++..+|-+..... ....+++.++++..+-+.+ -+|+.. ......+..+.+.+++.+..
T Consensus 101 ~~~~~~~p~r~~~~~~l~~~~~-------~~a~~el~~~~~~~g~~Gv---~l~~~~~~~~l~d~~~~~~~~~~~e~~lp 170 (336)
T 2wm1_A 101 ASTVVSYPRRFVGLGTLPMQAP-------ELAVKEMERCVKELGFPGV---QIGTHVNEWDLNAQELFPVYAAAERLKCS 170 (336)
T ss_dssp HHHHHHSTTTEEEEECCCTTSH-------HHHHHHHHHHHHTSCCSEE---EEESEETTEETTCGGGHHHHHHHHHHTCE
T ss_pred HHHHHhccCceeEEEeCCCcCH-------HHHHHHHHHHHHccCCeEE---EECCcCCCCCCCCccHHHHHHHHHHcCCE
Confidence 3344455666766665543211 1123567777754332323 233332 13446678888888888877
Q ss_pred EEEE
Q 011765 309 FFWV 312 (478)
Q Consensus 309 ~i~~ 312 (478)
+++=
T Consensus 171 v~iH 174 (336)
T 2wm1_A 171 LFVH 174 (336)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 5543
No 326
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=27.81 E-value=30 Score=29.77 Aligned_cols=32 Identities=16% Similarity=0.067 Sum_probs=24.7
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFIST 42 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~ 42 (478)
+|||.|+-.+..| ..+|+.|.+.||+|+++..
T Consensus 23 mmkI~IIG~G~mG-----~~la~~l~~~g~~V~~v~~ 54 (220)
T 4huj_A 23 MTTYAIIGAGAIG-----SALAERFTAAQIPAIIANS 54 (220)
T ss_dssp SCCEEEEECHHHH-----HHHHHHHHHTTCCEEEECT
T ss_pred CCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEEC
Confidence 5799998765555 4689999999999988443
No 327
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=27.77 E-value=48 Score=28.44 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=24.9
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
.|+|++.. +.|.+ -..|+++|.++||+|+.++-..
T Consensus 21 ~~~ilVtG--atG~i--G~~l~~~L~~~G~~V~~~~R~~ 55 (236)
T 3e8x_A 21 GMRVLVVG--ANGKV--ARYLLSELKNKGHEPVAMVRNE 55 (236)
T ss_dssp CCEEEEET--TTSHH--HHHHHHHHHHTTCEEEEEESSG
T ss_pred CCeEEEEC--CCChH--HHHHHHHHHhCCCeEEEEECCh
Confidence 46777764 33333 2478999999999999988553
No 328
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=27.72 E-value=88 Score=27.37 Aligned_cols=39 Identities=13% Similarity=0.115 Sum_probs=27.5
Q ss_pred ccEEEEecCCCc----------cC-HHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 6 KLQIAMFPWLAF----------GH-MIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 6 ~~~il~~~~~~~----------gH-~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
++|||++..... |- ..=+....+.|.+.|++|+++++..
T Consensus 3 m~kvlivlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~iaS~~g 52 (244)
T 3kkl_A 3 PKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETG 52 (244)
T ss_dssp CCEEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCEEEEEECCCCcccCCCCCcCcccHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 458888765431 21 2346677888999999999999753
No 329
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=27.62 E-value=35 Score=26.80 Aligned_cols=47 Identities=15% Similarity=0.183 Sum_probs=31.7
Q ss_pred hCCcEeccccccchhhHHHHHhhcC-eEEEeeccCCCCcccHHHHHHHHHHHhc
Q 011765 375 FGMPLIVLTCYADQGLNAKLLEEKQ-IVELIPRDEGDGFFTRNSVAESLRLVLV 427 (478)
Q Consensus 375 ~GvP~l~~P~~~DQ~~na~~v~~~g-~G~~l~~~~~~~~~~~~~l~~~i~~ll~ 427 (478)
..+|+|++--..+ ........+.| +--.+.+- ++.++|..+|+.++.
T Consensus 78 ~~~~ii~ls~~~~-~~~~~~~~~~g~~~~~l~kP-----~~~~~L~~~i~~~~~ 125 (154)
T 2rjn_A 78 PDIERVVISGYAD-AQATIDAVNRGKISRFLLKP-----WEDEDVFKVVEKGLQ 125 (154)
T ss_dssp TTSEEEEEECGGG-HHHHHHHHHTTCCSEEEESS-----CCHHHHHHHHHHHHH
T ss_pred CCCcEEEEecCCC-HHHHHHHHhccchheeeeCC-----CCHHHHHHHHHHHHH
Confidence 3678887765444 33444555555 64455443 699999999999998
No 330
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=27.57 E-value=96 Score=28.58 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=22.7
Q ss_pred eeeeeccChhhHHHHHH------hCCcEecccc
Q 011765 358 GGFLTHAGWSSVVEALQ------FGMPLIVLTC 384 (478)
Q Consensus 358 ~~~ItHgG~~s~~eal~------~GvP~l~~P~ 384 (478)
+++|.-||=||+.|++. .++|+.++|.
T Consensus 82 d~vvv~GGDGTv~~v~~~l~~~~~~~pl~iIP~ 114 (337)
T 2qv7_A 82 DVLIAAGGDGTLNEVVNGIAEKPNRPKLGVIPM 114 (337)
T ss_dssp SEEEEEECHHHHHHHHHHHTTCSSCCEEEEEEC
T ss_pred CEEEEEcCchHHHHHHHHHHhCCCCCcEEEecC
Confidence 44999999999999864 4679999996
No 331
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=27.42 E-value=65 Score=27.57 Aligned_cols=37 Identities=14% Similarity=0.168 Sum_probs=29.5
Q ss_pred EEE-Ee-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 8 QIA-MF-PWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 8 ~il-~~-~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
|++ ++ +-++.|-..-..+||..|+++|++|.++-...
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 444 43 34577999999999999999999999986554
No 332
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=27.40 E-value=1.2e+02 Score=23.44 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=35.5
Q ss_pred hCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhc
Q 011765 375 FGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLV 427 (478)
Q Consensus 375 ~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~ 427 (478)
..+|+|++--..+ .....+..+.|+--++.+- ++.++|.++|+++++
T Consensus 86 ~~ipvI~lTa~~~-~~~~~~~~~~Ga~~yl~KP-----~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 86 KHLPVLMITAEAK-REQIIEAAQAGVNGYIVKP-----FTAATLKEKLDKIFE 132 (134)
T ss_dssp TTCCEEEEESSCC-HHHHHHHHHTTCCEEEESS-----CCHHHHHHHHHHHCC
T ss_pred CCCeEEEEECCCC-HHHHHHHHHCCCCEEEECC-----CCHHHHHHHHHHHHh
Confidence 4689888875544 4456667788887777664 799999999999886
No 333
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*
Probab=27.35 E-value=43 Score=28.58 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=24.3
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
.+|||+++..+..| ..+|+.|.+.||+|+++...
T Consensus 27 ~~~~I~iiG~G~~G-----~~la~~l~~~g~~V~~~~r~ 60 (215)
T 2vns_A 27 EAPKVGILGSGDFA-----RSLATRLVGSGFKVVVGSRN 60 (215)
T ss_dssp --CCEEEECCSHHH-----HHHHHHHHHTTCCEEEEESS
T ss_pred CCCEEEEEccCHHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 35899998654444 45788999999999887643
No 334
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=27.07 E-value=2.1e+02 Score=26.44 Aligned_cols=41 Identities=5% Similarity=-0.032 Sum_probs=28.9
Q ss_pred ccEEEEecCCCccCH----HHHHHHHHHHHhCCCeEEEEeCCCcc
Q 011765 6 KLQIAMFPWLAFGHM----IPWLELAKLIAQKGHKIFFISTPRNI 46 (478)
Q Consensus 6 ~~~il~~~~~~~gH~----~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (478)
...++++++++.+-. .-+..++++|.+.+..|.+.......
T Consensus 236 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~ 280 (400)
T 4amg_A 236 GRRRIAVTLGSIDALSGGIAKLAPLFSEVADVDAEFVLTLGGGDL 280 (400)
T ss_dssp TCCEEEECCCSCC--CCSSSTTHHHHHHGGGSSSEEEEECCTTCC
T ss_pred CCcEEEEeCCcccccCccHHHHHHHHHHhhccCceEEEEecCccc
Confidence 345788888876443 34677889999999999988766543
No 335
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6
Probab=27.03 E-value=89 Score=25.31 Aligned_cols=46 Identities=9% Similarity=0.165 Sum_probs=31.7
Q ss_pred HHhhhhHHHHHHHhhcCCCEEEEcCCcc--------------c-HHHHHHHhCCCeEEEec
Q 011765 94 SFDCLEEPMAKLLQSLAPDWLLFDFAAY--------------W-LPARARELGIPSGFFSI 139 (478)
Q Consensus 94 ~~~~~~~~l~~ll~~~~pD~vI~D~~~~--------------~-~~~~A~~lgIP~i~~~~ 139 (478)
....+...+.+++++.+||.+..+..++ + ...++...|||+.-+.+
T Consensus 43 Rl~~i~~~l~~~i~~~~Pd~vaiE~vf~~~n~~s~~~lgqarGv~~~a~~~~~ipv~eytp 103 (158)
T 1hjr_A 43 RLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAA 103 (158)
T ss_dssp HHHHHHHHHHHHHHHHCCSEEEEEECCCCCCTTTHHHHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEeecccccChHHHHHHHHHHHHHHHHHHHcCCCEEEECH
Confidence 3345566788888889999997663221 1 23567788999998755
No 336
>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.80A {Homo sapiens}
Probab=27.02 E-value=59 Score=29.69 Aligned_cols=34 Identities=6% Similarity=0.087 Sum_probs=27.6
Q ss_pred cEEEEecCCCc--cCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 7 LQIAMFPWLAF--GHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 7 ~~il~~~~~~~--gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
.+|++++.++- |+ -+.+|+.|+.+|++|+++...
T Consensus 133 ~~vlVlcG~GNNGGD---Glv~AR~L~~~G~~V~V~~~~ 168 (306)
T 3d3j_A 133 PTVALLCGPHVKGAQ---GISCGRHLANHDVQVILFLPN 168 (306)
T ss_dssp CEEEEEECSSHHHHH---HHHHHHHHHHTTCEEEEECCC
T ss_pred CeEEEEECCCCCHHH---HHHHHHHHHHCCCcEEEEEec
Confidence 48999988765 44 378999999999999998654
No 337
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=26.93 E-value=1.8e+02 Score=22.32 Aligned_cols=47 Identities=9% Similarity=0.081 Sum_probs=30.8
Q ss_pred hCCcEeccccccchhhHHHHHhhcC-eEEEeeccCCCCcccHHHHHHHHHHHhc
Q 011765 375 FGMPLIVLTCYADQGLNAKLLEEKQ-IVELIPRDEGDGFFTRNSVAESLRLVLV 427 (478)
Q Consensus 375 ~GvP~l~~P~~~DQ~~na~~v~~~g-~G~~l~~~~~~~~~~~~~l~~~i~~ll~ 427 (478)
..+|+|++--..|. .......+.| +--.+.+- ++.++|..+|+.++.
T Consensus 75 ~~~~ii~~s~~~~~-~~~~~~~~~g~~~~~l~KP-----~~~~~L~~~i~~~l~ 122 (151)
T 3kcn_A 75 PNSVYLMLTGNQDL-TTAMEAVNEGQVFRFLNKP-----CQMSDIKAAINAGIK 122 (151)
T ss_dssp SSCEEEEEECGGGH-HHHHHHHHHTCCSEEEESS-----CCHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCH-HHHHHHHHcCCeeEEEcCC-----CCHHHHHHHHHHHHH
Confidence 35677776554443 3344455566 53444443 699999999999998
No 338
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=26.92 E-value=70 Score=28.88 Aligned_cols=39 Identities=13% Similarity=0.177 Sum_probs=31.3
Q ss_pred ccEE-EEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 6 KLQI-AMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 6 ~~~i-l~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
++++ .+..-++.|=..-..+||..|+++|++|.++-.+.
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 79 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 79 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4454 55555677999999999999999999999987664
No 339
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=26.92 E-value=99 Score=22.99 Aligned_cols=39 Identities=21% Similarity=0.141 Sum_probs=22.9
Q ss_pred HHHHhhcCCCEEEEcCCccc--HHHHHHH-----hCCCeEEEecch
Q 011765 103 AKLLQSLAPDWLLFDFAAYW--LPARARE-----LGIPSGFFSIFT 141 (478)
Q Consensus 103 ~~ll~~~~pD~vI~D~~~~~--~~~~A~~-----lgIP~i~~~~~~ 141 (478)
.+.+++.+||+||.|...+. +..+.+. -.+|+|.+....
T Consensus 44 ~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~t~~~ 89 (130)
T 3eod_A 44 LELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATE 89 (130)
T ss_dssp HHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEEECCC
T ss_pred HHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEcCC
Confidence 34456778999999975442 3333322 258888776543
No 340
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=26.89 E-value=61 Score=28.50 Aligned_cols=37 Identities=16% Similarity=0.218 Sum_probs=30.0
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
.|.+..-++.|-..-..+||..|+++|++|.++-.+.
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~ 39 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDP 39 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCC
Confidence 3455555677999999999999999999999876554
No 341
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=26.85 E-value=1.2e+02 Score=22.43 Aligned_cols=36 Identities=8% Similarity=0.062 Sum_probs=27.1
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFIS 41 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~ 41 (478)
++||+++|..+.|==.-.-.+=+.+.++|.++.+..
T Consensus 3 mkkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a 38 (106)
T 1e2b_A 3 KKHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEA 38 (106)
T ss_dssp CEEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEE
T ss_pred CcEEEEECCCchhHHHHHHHHHHHHHHCCCCeEEEE
Confidence 468999988877544556688888899998876544
No 342
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=26.82 E-value=1e+02 Score=25.80 Aligned_cols=39 Identities=13% Similarity=0.085 Sum_probs=27.2
Q ss_pred CccEEEEecCCC-c--cCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 5 SKLQIAMFPWLA-F--GHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 5 ~~~~il~~~~~~-~--gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
.+|+|.+++... . -+..-...|++.|+++|+.|++-..+
T Consensus 12 ~~~~I~Vfg~s~~~~~~~~~~A~~lg~~la~~g~~lv~GGG~ 53 (189)
T 3sbx_A 12 GRWTVAVYCAAAPTHPELLELAGAVGAAIAARGWTLVWGGGH 53 (189)
T ss_dssp -CCEEEEECCSSCCCHHHHHHHHHHHHHHHHTTCEEEECCBC
T ss_pred CCeEEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEECCCc
Confidence 358998887655 1 22345778889999999988775433
No 343
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=26.81 E-value=3.8e+02 Score=24.71 Aligned_cols=38 Identities=11% Similarity=0.035 Sum_probs=26.8
Q ss_pred EEEEecCCCc--cCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 011765 8 QIAMFPWLAF--GHMIPWLELAKLIAQKGHKIFFISTPRN 45 (478)
Q Consensus 8 ~il~~~~~~~--gH~~p~l~La~~L~~rGh~Vt~~~~~~~ 45 (478)
++++++.++. ....-+..+++.|.+.+.++.+++.+..
T Consensus 243 ~~vlv~~G~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~ 282 (412)
T 3otg_A 243 PLVYLTLGTSSGGTVEVLRAAIDGLAGLDADVLVASGPSL 282 (412)
T ss_dssp CEEEEECTTTTCSCHHHHHHHHHHHHTSSSEEEEECCSSC
T ss_pred CEEEEEcCCCCcCcHHHHHHHHHHHHcCCCEEEEEECCCC
Confidence 4555655555 4455677888889888988888877654
No 344
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=26.81 E-value=1.1e+02 Score=22.08 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=24.7
Q ss_pred HHHHhhcCCCEEEEcCCcc--cHHHHHH----HhCCCeEEEecch
Q 011765 103 AKLLQSLAPDWLLFDFAAY--WLPARAR----ELGIPSGFFSIFT 141 (478)
Q Consensus 103 ~~ll~~~~pD~vI~D~~~~--~~~~~A~----~lgIP~i~~~~~~ 141 (478)
.+.+...+||+||.|...+ .+..+++ .-.+|++.+....
T Consensus 38 ~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 82 (120)
T 2a9o_A 38 LEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSAKD 82 (120)
T ss_dssp HHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEESCC
T ss_pred HHHHHhCCCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEecCC
Confidence 3445566899999997554 3443333 3468888876543
No 345
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}
Probab=26.79 E-value=70 Score=28.73 Aligned_cols=33 Identities=15% Similarity=0.313 Sum_probs=25.6
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFIST 42 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~ 42 (478)
++|||.|+-.+..|. .+|+.|.+.||+|+++..
T Consensus 3 ~~~~i~iiG~G~~G~-----~~a~~l~~~g~~V~~~~~ 35 (301)
T 3cky_A 3 KSIKIGFIGLGAMGK-----PMAINLLKEGVTVYAFDL 35 (301)
T ss_dssp -CCEEEEECCCTTHH-----HHHHHHHHTTCEEEEECS
T ss_pred CCCEEEEECccHHHH-----HHHHHHHHCCCeEEEEeC
Confidence 368999998776664 468889999999987654
No 346
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=26.66 E-value=2.8e+02 Score=23.10 Aligned_cols=101 Identities=15% Similarity=0.039 Sum_probs=52.7
Q ss_pred hhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEec
Q 011765 265 RSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTS 344 (478)
Q Consensus 265 ~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~ 344 (478)
.++-++|-+++ ..+|+-|.. .-.+....++....+-+++=++..... ....+... -...++++
T Consensus 34 ~~lg~~la~~g---~~lv~GGG~----~GlM~a~~~ga~~~GG~viGv~p~~l~-----~~e~~~~~-----~~~~i~~~ 96 (189)
T 3sbx_A 34 GAVGAAIAARG---WTLVWGGGH----VSAMGAVSSAARAHGGWTVGVIPKMLV-----HRELADHD-----ADELVVTE 96 (189)
T ss_dssp HHHHHHHHHTT---CEEEECCBC----SHHHHHHHHHHHTTTCCEEEEEETTTT-----TTTTBCTT-----CSEEEEES
T ss_pred HHHHHHHHHCC---CEEEECCCc----cCHHHHHHHHHHHcCCcEEEEcCchhh-----hcccCCCC-----CCeeEEcC
Confidence 34555665543 455555432 134555666666666666665543210 11112100 01334445
Q ss_pred cCCh-hhh-hcCCCceeeeeccChhhHHHHHH---------hCCcEeccc
Q 011765 345 WAPQ-LAI-LAHDSVGGFLTHAGWSSVVEALQ---------FGMPLIVLT 383 (478)
Q Consensus 345 ~vpq-~~v-L~~~~~~~~ItHgG~~s~~eal~---------~GvP~l~~P 383 (478)
+... ... +.+++. .++-=||.||+-|... +++|++.+-
T Consensus 97 ~~~~Rk~~m~~~sda-~IalPGG~GTLdElfe~lt~~qlg~~~kPvvlln 145 (189)
T 3sbx_A 97 TMWERKQVMEDRANA-FITLPGGVGTLDELLDVWTEGYLGMHDKSIVVLD 145 (189)
T ss_dssp SHHHHHHHHHHHCSE-EEECSCCHHHHHHHHHHHHHHHTTSCCCCEEEEC
T ss_pred CHHHHHHHHHHHCCE-EEEeCCCcchHHHHHHHHHHHHhcccCCCEEEec
Confidence 4444 333 334553 4667788999988752 589999885
No 347
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=26.44 E-value=65 Score=26.93 Aligned_cols=38 Identities=13% Similarity=0.302 Sum_probs=28.6
Q ss_pred EEEEecCCCc---cCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 011765 8 QIAMFPWLAF---GHMIPWLELAKLIAQKGHKIFFISTPRN 45 (478)
Q Consensus 8 ~il~~~~~~~---gH~~p~l~La~~L~~rGh~Vt~~~~~~~ 45 (478)
+|+|+|.-+. --.++...|++.|.++|.+|.|..++-.
T Consensus 48 ~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVA 88 (203)
T 2fsv_C 48 KVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVA 88 (203)
T ss_dssp EEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTC
T ss_pred cEEEEcCchHhHHHHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 6777664322 2346789999999999999999887753
No 348
>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A*
Probab=26.41 E-value=52 Score=28.81 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=22.0
Q ss_pred HhhcCCCEEEEcCCcc-cHHHHHHHhCCCeEEEe
Q 011765 106 LQSLAPDWLLFDFAAY-WLPARARELGIPSGFFS 138 (478)
Q Consensus 106 l~~~~pD~vI~D~~~~-~~~~~A~~lgIP~i~~~ 138 (478)
+.+.+||+||...... .....-+..|||++.+.
T Consensus 56 i~~l~PDLIi~~~~~~~~~~~~L~~~gipvv~~~ 89 (260)
T 2q8p_A 56 VKKLKPTHVLSVSTIKDEMQPFYKQLNMKGYFYD 89 (260)
T ss_dssp HHHTCCSEEEEEGGGHHHHHHHHHHHTSCCEEEC
T ss_pred HHhcCCCEEEecCccCHHHHHHHHHcCCcEEEec
Confidence 4467999999864322 12334567899999874
No 349
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=26.38 E-value=26 Score=30.41 Aligned_cols=123 Identities=11% Similarity=0.028 Sum_probs=65.9
Q ss_pred EEEEecCCCccCHHHHHHHHHH-HHhCCCeEEEEeCCCccccCC----CCCCC-----CCCCeEEEEecCCCCCCCCCCc
Q 011765 8 QIAMFPWLAFGHMIPWLELAKL-IAQKGHKIFFISTPRNIDRLP----RLPQN-----LASMIQFVKISLPHVDNLRENA 77 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~-L~~rGh~Vt~~~~~~~~~~~~----~~g~~-----~~~~i~~~~i~~~~~~~l~~~~ 77 (478)
=+++...|+.|-..-++.+|.. +.+.|..|.|++.+...+.+. ..+.. ....+.+.... ....
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-------~~~~ 104 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGV-------SSVV 104 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------------
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCChHHHHhcCcchhhhhH-------HHHh
Confidence 4677888899999999998765 455688999999886654332 11100 00112222111 0000
Q ss_pred cccCCCChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCccc----------------HHHHHHHhCCCeEEEec
Q 011765 78 EATIDLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYW----------------LPARARELGIPSGFFSI 139 (478)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~----------------~~~~A~~lgIP~i~~~~ 139 (478)
.. ................+...+.+.++..+++.+|.|..... -...|+.+|+|++.++.
T Consensus 105 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q 180 (251)
T 2zts_A 105 GL--PSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTE 180 (251)
T ss_dssp ---------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEEC
T ss_pred hc--ccchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 00 00000000001112234456667777889999999974321 12467889999998754
No 350
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=26.25 E-value=60 Score=29.57 Aligned_cols=36 Identities=22% Similarity=0.165 Sum_probs=24.6
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
..|+||+.- +.|.+ -..|++.|.++||+|+.++...
T Consensus 13 ~~~~vlVTG--atG~i--G~~l~~~L~~~g~~V~~~~r~~ 48 (335)
T 1rpn_A 13 MTRSALVTG--ITGQD--GAYLAKLLLEKGYRVHGLVARR 48 (335)
T ss_dssp --CEEEEET--TTSHH--HHHHHHHHHHTTCEEEEEECCC
T ss_pred cCCeEEEEC--CCChH--HHHHHHHHHHCCCeEEEEeCCC
Confidence 467887763 33333 3578999999999999887543
No 351
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=26.20 E-value=69 Score=27.12 Aligned_cols=33 Identities=9% Similarity=-0.051 Sum_probs=27.6
Q ss_pred EEEEec-CCCccCHHHHHHHHHHHHhCCCeEEEE
Q 011765 8 QIAMFP-WLAFGHMIPWLELAKLIAQKGHKIFFI 40 (478)
Q Consensus 8 ~il~~~-~~~~gH~~p~l~La~~L~~rGh~Vt~~ 40 (478)
.|++.+ -++.|-..-..+||..|+++|++|.++
T Consensus 3 ~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 345554 367899999999999999999999986
No 352
>3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp}
Probab=26.19 E-value=84 Score=26.40 Aligned_cols=37 Identities=22% Similarity=0.160 Sum_probs=29.7
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFIST 42 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~ 42 (478)
+..++++.++..|+-.-+..+++.|+++|+.|..+-.
T Consensus 31 ~~p~vv~~HG~~g~~~~~~~~~~~l~~~G~~v~~~d~ 67 (241)
T 3f67_A 31 PLPIVIVVQEIFGVHEHIRDLCRRLAQEGYLAIAPEL 67 (241)
T ss_dssp CEEEEEEECCTTCSCHHHHHHHHHHHHTTCEEEEECT
T ss_pred CCCEEEEEcCcCccCHHHHHHHHHHHHCCcEEEEecc
Confidence 3456777777778878899999999999999887654
No 353
>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6
Probab=26.05 E-value=38 Score=31.08 Aligned_cols=31 Identities=16% Similarity=0.273 Sum_probs=25.0
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFIST 42 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~ 42 (478)
|||.|+-.+..| ..+|..|.++||+|+++..
T Consensus 1 m~I~iiG~G~mG-----~~~a~~L~~~g~~V~~~~r 31 (335)
T 1txg_A 1 MIVSILGAGAMG-----SALSVPLVDNGNEVRIWGT 31 (335)
T ss_dssp CEEEEESCCHHH-----HHHHHHHHHHCCEEEEECC
T ss_pred CEEEEECcCHHH-----HHHHHHHHhCCCeEEEEEc
Confidence 688888776656 4568899999999999876
No 354
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=26.04 E-value=93 Score=22.89 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=23.4
Q ss_pred HHHhhcCCCEEEEcCCcc--cHHHHHHHh-----CCCeEEEecc
Q 011765 104 KLLQSLAPDWLLFDFAAY--WLPARAREL-----GIPSGFFSIF 140 (478)
Q Consensus 104 ~ll~~~~pD~vI~D~~~~--~~~~~A~~l-----gIP~i~~~~~ 140 (478)
+.++..+||+||.|...+ .+..+++.+ .+|+|.++..
T Consensus 41 ~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 84 (124)
T 1srr_A 41 DIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAY 84 (124)
T ss_dssp HHHHHHCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEESS
T ss_pred HHHhccCCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEEEcc
Confidence 344556899999997554 344443332 5788877554
No 355
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=26.03 E-value=99 Score=22.65 Aligned_cols=37 Identities=19% Similarity=0.141 Sum_probs=22.9
Q ss_pred HHHHhhcCCCEEEEcCCcc--cHHHHHHHh-------CCCeEEEec
Q 011765 103 AKLLQSLAPDWLLFDFAAY--WLPARAREL-------GIPSGFFSI 139 (478)
Q Consensus 103 ~~ll~~~~pD~vI~D~~~~--~~~~~A~~l-------gIP~i~~~~ 139 (478)
.+.++..+||+||.|...+ .+..+++.+ .+|++.+..
T Consensus 38 ~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~ 83 (124)
T 1mb3_A 38 LSIARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVTA 83 (124)
T ss_dssp HHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC-
T ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEEEEEC
Confidence 3445566899999997554 344444332 578887754
No 356
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*
Probab=26.01 E-value=37 Score=31.32 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=27.3
Q ss_pred CCCCCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 1 MADNSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 1 ~~~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
|+++..-||.++--+..|+ .+|..++.+|++|+++-..
T Consensus 1 Ma~p~~~~VaViGaG~MG~-----giA~~~a~~G~~V~l~D~~ 38 (319)
T 3ado_A 1 MASPAAGDVLIVGSGLVGR-----SWAMLFASGGFRVKLYDIE 38 (319)
T ss_dssp ------CEEEEECCSHHHH-----HHHHHHHHTTCCEEEECSC
T ss_pred CCCCCCCeEEEECCcHHHH-----HHHHHHHhCCCeEEEEECC
Confidence 8888788999998887775 6899999999999998654
No 357
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=26.01 E-value=1.1e+02 Score=23.23 Aligned_cols=39 Identities=8% Similarity=0.016 Sum_probs=25.2
Q ss_pred HHHHHhhcCCCEEEEcCCcc--cHHHHHHHh----CCCeEEEecc
Q 011765 102 MAKLLQSLAPDWLLFDFAAY--WLPARAREL----GIPSGFFSIF 140 (478)
Q Consensus 102 l~~ll~~~~pD~vI~D~~~~--~~~~~A~~l----gIP~i~~~~~ 140 (478)
..+.++..+||+||.|...+ .+..+.+.+ .+|+|.+...
T Consensus 40 al~~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ls~~ 84 (136)
T 2qzj_A 40 AIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYMTYI 84 (136)
T ss_dssp HHHHHHHCCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESC
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEEEcC
Confidence 34455667899999997554 355444433 5888877554
No 358
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=26.00 E-value=47 Score=29.81 Aligned_cols=33 Identities=9% Similarity=0.086 Sum_probs=25.7
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
+|||.|+-.+..| ..+|+.|+++||+|+++...
T Consensus 1 M~~I~iiG~G~mG-----~~~a~~l~~~G~~V~~~dr~ 33 (287)
T 3pdu_A 1 MTTYGFLGLGIMG-----GPMAANLVRAGFDVTVWNRN 33 (287)
T ss_dssp CCCEEEECCSTTH-----HHHHHHHHHHTCCEEEECSS
T ss_pred CCeEEEEccCHHH-----HHHHHHHHHCCCeEEEEcCC
Confidence 3689999777766 45789999999999987543
No 359
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=25.86 E-value=54 Score=28.01 Aligned_cols=33 Identities=21% Similarity=0.163 Sum_probs=24.7
Q ss_pred CCCEEE-EcCCc-ccHHHHHHHhCCCeEEEecchH
Q 011765 110 APDWLL-FDFAA-YWLPARARELGIPSGFFSIFTA 142 (478)
Q Consensus 110 ~pD~vI-~D~~~-~~~~~~A~~lgIP~i~~~~~~~ 142 (478)
.||+|| .|+.. .-++.=|.++|||+|.+..+++
T Consensus 115 ~PdlliV~Dp~~e~~ai~EA~~l~IPvIalvDTn~ 149 (208)
T 1vi6_A 115 EPEVVFVNDPAIDKQAVSEATAVGIPVVALCDSNN 149 (208)
T ss_dssp CCSEEEESCTTTTHHHHHHHHHTTCCEEEEECTTC
T ss_pred CCCEEEEECCCcchhHHHHHHHhCCCEEEEeCCCC
Confidence 699886 56533 2467779999999999977554
No 360
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=25.83 E-value=84 Score=29.57 Aligned_cols=35 Identities=11% Similarity=-0.002 Sum_probs=24.5
Q ss_pred ceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEe
Q 011765 278 SVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLK 314 (478)
Q Consensus 278 ~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~ 314 (478)
.+++++.|+.+ ....+..++++|.+.|+++.++..
T Consensus 22 rIl~~~~~~~G--Hv~p~l~La~~L~~~Gh~V~v~~~ 56 (415)
T 3rsc_A 22 HLLIVNVASHG--LILPTLTVVTELVRRGHRVSYVTA 56 (415)
T ss_dssp EEEEECCSCHH--HHGGGHHHHHHHHHTTCEEEEEEC
T ss_pred EEEEEeCCCcc--ccccHHHHHHHHHHCCCEEEEEeC
Confidence 48888877544 233455688888888998887764
No 361
>3d3k_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.20A {Homo sapiens}
Probab=25.81 E-value=65 Score=28.61 Aligned_cols=34 Identities=6% Similarity=0.087 Sum_probs=27.3
Q ss_pred cEEEEecCCCc--cCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 7 LQIAMFPWLAF--GHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 7 ~~il~~~~~~~--gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
.+|++++.++- |+ -+.+|+.|+++|++|+++...
T Consensus 86 ~~vlVlcG~GNNGGD---Glv~AR~L~~~G~~V~v~~~~ 121 (259)
T 3d3k_A 86 PTVALLCGPHVKGAQ---GISCGRHLANHDVQVILFLPN 121 (259)
T ss_dssp CEEEEEECSSHHHHH---HHHHHHHHHHTTCEEEEECCB
T ss_pred CeEEEEECCCCCHHH---HHHHHHHHHHCCCeEEEEEec
Confidence 48999888765 44 378999999999999998654
No 362
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=25.78 E-value=67 Score=26.91 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=28.7
Q ss_pred EEEEecCCCc---cCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 011765 8 QIAMFPWLAF---GHMIPWLELAKLIAQKGHKIFFISTPRN 45 (478)
Q Consensus 8 ~il~~~~~~~---gH~~p~l~La~~L~~rGh~Vt~~~~~~~ 45 (478)
+|+|+|.-+. ---++...|++.|.++|.+|.|..+|-.
T Consensus 47 ~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVA 87 (207)
T 1djl_A 47 SIIITPGYGLCAAKAQYPIADLVKMLTEQGKKVRFGIHPVA 87 (207)
T ss_dssp EEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTC
T ss_pred eEEEECCchHHHHHHhHHHHHHHHHHHHCCCeEEEEeCccC
Confidence 6777664322 2356789999999999999999887753
No 363
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}
Probab=25.54 E-value=63 Score=31.89 Aligned_cols=35 Identities=14% Similarity=0.195 Sum_probs=25.7
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
+|+||+..-.+. +- ..|++.|.++||+|+.++-..
T Consensus 147 ~m~VLVTGatG~--IG--~~l~~~L~~~G~~V~~l~R~~ 181 (516)
T 3oh8_A 147 PLTVAITGSRGL--VG--RALTAQLQTGGHEVIQLVRKE 181 (516)
T ss_dssp CCEEEEESTTSH--HH--HHHHHHHHHTTCEEEEEESSS
T ss_pred CCEEEEECCCCH--HH--HHHHHHHHHCCCEEEEEECCC
Confidence 689887753332 22 468999999999999987654
No 364
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A
Probab=25.52 E-value=61 Score=28.30 Aligned_cols=33 Identities=18% Similarity=0.018 Sum_probs=22.1
Q ss_pred HHhhcCCCEEEEcCCcc--cHHHHHHHhCCCeEEE
Q 011765 105 LLQSLAPDWLLFDFAAY--WLPARARELGIPSGFF 137 (478)
Q Consensus 105 ll~~~~pD~vI~D~~~~--~~~~~A~~lgIP~i~~ 137 (478)
.+.+.+||+||...... ....--+..|||++.+
T Consensus 54 ~i~~l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~ 88 (256)
T 2r7a_A 54 GILSLRPDSVITWQDAGPQIVLDQLRAQKVNVVTL 88 (256)
T ss_dssp HHHTTCCSEEEEETTCSCHHHHHHHHHTTCEEEEE
T ss_pred HHHccCCCEEEEcCCCCCHHHHHHHHHcCCcEEEe
Confidence 34467999999875432 1233346789999877
No 365
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=25.43 E-value=1.1e+02 Score=23.55 Aligned_cols=40 Identities=13% Similarity=0.008 Sum_probs=25.9
Q ss_pred HHHHHHhhcCCCEEEEcCCcc--cHHHHHHHh-----CCCeEEEecc
Q 011765 101 PMAKLLQSLAPDWLLFDFAAY--WLPARAREL-----GIPSGFFSIF 140 (478)
Q Consensus 101 ~l~~ll~~~~pD~vI~D~~~~--~~~~~A~~l-----gIP~i~~~~~ 140 (478)
...+.+++.+||+||.|...+ .+..+.+.+ ++|+|.+...
T Consensus 57 ~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~ 103 (150)
T 4e7p_A 57 EAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTF 103 (150)
T ss_dssp HHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESC
T ss_pred HHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCC
Confidence 445566778899999997544 344444332 5788877654
No 366
>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Probab=25.42 E-value=63 Score=28.16 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=26.8
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
+|||.|+-.+..| ..+|+.|++.||+|++.....
T Consensus 19 ~~kIgiIG~G~mG-----~alA~~L~~~G~~V~~~~r~~ 52 (245)
T 3dtt_A 19 GMKIAVLGTGTVG-----RTMAGALADLGHEVTIGTRDP 52 (245)
T ss_dssp CCEEEEECCSHHH-----HHHHHHHHHTTCEEEEEESCH
T ss_pred CCeEEEECCCHHH-----HHHHHHHHHCCCEEEEEeCCh
Confidence 6899999666555 467999999999999876543
No 367
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=25.42 E-value=3.4e+02 Score=23.62 Aligned_cols=103 Identities=17% Similarity=0.132 Sum_probs=65.1
Q ss_pred ccCCCCc-eEEEEeCcccCCCHHHHHHHHHHH----HhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccC
Q 011765 272 DEQEKGS-VVYVAFGSEAKPSQEELTEIALGL----ELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWA 346 (478)
Q Consensus 272 ~~~~~~~-~v~vs~Gs~~~~~~~~~~~~~~al----~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~v 346 (478)
|++-+|. +-...+||..++.++........+ +..+.+|+++++.+ ..+|.
T Consensus 25 DErAdRedI~vrv~gsGaKm~pe~~~~~~~~~~~~~~~~~pDfvI~isPN--------~a~PG----------------- 79 (283)
T 1qv9_A 25 DERADREDVEFRVVGTSVKMDPECVEAAVEMALDIAEDFEPDFIVYGGPN--------PAAPG----------------- 79 (283)
T ss_dssp STTSCCSSEEEEEEECTTCCSHHHHHHHHHHHHHHHHHHCCSEEEEECSC--------TTSHH-----------------
T ss_pred HhhhccCCceEEEeccCCCCCHHHHHHHHHHhhhhhhhcCCCEEEEECCC--------CCCCC-----------------
Confidence 4443342 566678888899998888866665 56788888888653 22232
Q ss_pred ChhhhhcCCCceeeeeccChhhHHHHH-HhCCcEeccccccchhhHHHHHhhcCeEEEeeccC-----CCCcccHHHHH
Q 011765 347 PQLAILAHDSVGGFLTHAGWSSVVEAL-QFGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDE-----GDGFFTRNSVA 419 (478)
Q Consensus 347 pq~~vL~~~~~~~~ItHgG~~s~~eal-~~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~-----~~~~~~~~~l~ 419 (478)
-...-|.+ ..|+|.|++.-..--. --..+++.|.|..+-+.+ ++.++++.+.+
T Consensus 80 -------------------P~~ARE~l~~~~iP~IvI~D~p~~K-~kd~l~~~g~GYIivk~DpMIGArREFLDP~EMa 138 (283)
T 1qv9_A 80 -------------------PSKAREMLADSEYPAVIIGDAPGLK-VKDEMEEQGLGYILVKPDAMLGARREFLDPVEMA 138 (283)
T ss_dssp -------------------HHHHHHHHHTSSSCEEEEEEGGGGG-GHHHHHHTTCEEEEETTSCCCCCCTTTCCHHHHH
T ss_pred -------------------chHHHHHHHhCCCCEEEEcCCcchh-hHHHHHhcCCcEEEEecCccccchhhccCHHHHH
Confidence 12233333 4688998876544333 125688889999987654 25567776654
No 368
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=25.40 E-value=35 Score=30.36 Aligned_cols=34 Identities=21% Similarity=0.202 Sum_probs=25.4
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
+|||++.. + |.+- ..|+++|.++||+|+.++-..
T Consensus 5 ~~~ilVtG--a-G~iG--~~l~~~L~~~g~~V~~~~r~~ 38 (286)
T 3ius_A 5 TGTLLSFG--H-GYTA--RVLSRALAPQGWRIIGTSRNP 38 (286)
T ss_dssp CCEEEEET--C-CHHH--HHHHHHHGGGTCEEEEEESCG
T ss_pred cCcEEEEC--C-cHHH--HHHHHHHHHCCCEEEEEEcCh
Confidence 46888775 4 5443 468999999999999987654
No 369
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=25.33 E-value=1.2e+02 Score=22.11 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=24.7
Q ss_pred HHHHHhhcCCCEEEEcCCcc--cHHHHHHH----hCCCeEEEecc
Q 011765 102 MAKLLQSLAPDWLLFDFAAY--WLPARARE----LGIPSGFFSIF 140 (478)
Q Consensus 102 l~~ll~~~~pD~vI~D~~~~--~~~~~A~~----lgIP~i~~~~~ 140 (478)
..+.+...+||+||.|...+ .+..+++. -.+|++.+...
T Consensus 39 a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~ 83 (123)
T 1xhf_A 39 MHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALMFLTGR 83 (123)
T ss_dssp HHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEESC
T ss_pred HHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEECC
Confidence 34455667899999997554 34444333 36788777554
No 370
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=25.30 E-value=57 Score=30.94 Aligned_cols=28 Identities=7% Similarity=0.234 Sum_probs=19.8
Q ss_pred ceeeeeccChhhHHHH-----HHhCCcEeccccc
Q 011765 357 VGGFLTHAGWSSVVEA-----LQFGMPLIVLTCY 385 (478)
Q Consensus 357 ~~~~ItHgG~~s~~ea-----l~~GvP~l~~P~~ 385 (478)
++++|.=|| ||++.+ +..|+|+|.+|..
T Consensus 107 ~d~IIavGG-Gs~~D~AK~iA~~~~~p~i~IPTT 139 (387)
T 3uhj_A 107 SDILVGVGG-GKTADTAKIVAIDTGARIVIAPTI 139 (387)
T ss_dssp CSEEEEESS-HHHHHHHHHHHHHTTCEEEECCSS
T ss_pred CCEEEEeCC-cHHHHHHHHHHHhcCCCEEEecCc
Confidence 344777776 555544 5579999999975
No 371
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=25.24 E-value=1e+02 Score=27.42 Aligned_cols=41 Identities=22% Similarity=0.127 Sum_probs=33.0
Q ss_pred CccEEEEec--CCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 011765 5 SKLQIAMFP--WLAFGHMIPWLELAKLIAQKGHKIFFISTPRN 45 (478)
Q Consensus 5 ~~~~il~~~--~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~ 45 (478)
+++|+++++ -++.|-..-..+||..|+++|.+|.++-.+..
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~ 122 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMR 122 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 456665553 46789999999999999999999999876644
No 372
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=25.20 E-value=65 Score=30.30 Aligned_cols=39 Identities=15% Similarity=0.056 Sum_probs=28.7
Q ss_pred CccEEEEecCCCcc-C---HHHHHHHHHHH-HhCCCeEEEEeCC
Q 011765 5 SKLQIAMFPWLAFG-H---MIPWLELAKLI-AQKGHKIFFISTP 43 (478)
Q Consensus 5 ~~~~il~~~~~~~g-H---~~p~l~La~~L-~~rGh~Vt~~~~~ 43 (478)
+||||+++..+-.+ | +.-...++++| .++||+|+.+...
T Consensus 2 ~k~~v~vl~gG~s~E~~vSl~s~~~v~~al~~~~g~~v~~i~~~ 45 (377)
T 1ehi_A 2 TKKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIA 45 (377)
T ss_dssp -CEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHSSEEEEEEEEC
T ss_pred CCcEEEEEeCCCCCCcceeHHHHHHHHHHhCcccCcEEEEEEEc
Confidence 37899988655333 3 33578889999 9999999988644
No 373
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=25.12 E-value=1.9e+02 Score=27.70 Aligned_cols=33 Identities=15% Similarity=0.074 Sum_probs=24.0
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
.|||++.-+ . -.+.+++++++.|++|+++.+..
T Consensus 7 ~kiLI~g~g---~--~a~~i~~aa~~~G~~~v~v~~~~ 39 (446)
T 3ouz_A 7 KSILIANRG---E--IALRALRTIKEMGKKAICVYSEA 39 (446)
T ss_dssp CEEEECCCH---H--HHHHHHHHHHHTTCEEEEEEEGG
T ss_pred ceEEEECCC---H--HHHHHHHHHHHcCCEEEEEEcCc
Confidence 377775432 2 45789999999999999886543
No 374
>2o8n_A APOA-I binding protein; rossmann fold, protein binding; 2.00A {Mus musculus} PDB: 2dg2_A
Probab=25.00 E-value=73 Score=28.39 Aligned_cols=34 Identities=12% Similarity=-0.061 Sum_probs=27.4
Q ss_pred cEEEEecCCCc--cCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 7 LQIAMFPWLAF--GHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 7 ~~il~~~~~~~--gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
.+|++++.++- |+ -+.+|+.|.++|++|+++...
T Consensus 80 ~~VlVlcG~GNNGGD---Glv~AR~L~~~G~~V~V~~~~ 115 (265)
T 2o8n_A 80 PTVLVICGPGNNGGD---GLVCARHLKLFGYQPTIYYPK 115 (265)
T ss_dssp CEEEEEECSSHHHHH---HHHHHHHHHHTTCEEEEECCS
T ss_pred CeEEEEECCCCCHHH---HHHHHHHHHHCCCcEEEEEeC
Confidence 48999888765 43 378999999999999997654
No 375
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Probab=24.97 E-value=67 Score=29.42 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=24.2
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
++|+||+.. +.|.+ -..|++.|.++||+|+.+...
T Consensus 26 ~~~~vlVtG--atG~i--G~~l~~~L~~~g~~V~~~~r~ 60 (343)
T 2b69_A 26 DRKRILITG--GAGFV--GSHLTDKLMMDGHEVTVVDNF 60 (343)
T ss_dssp -CCEEEEET--TTSHH--HHHHHHHHHHTTCEEEEEECC
T ss_pred CCCEEEEEc--CccHH--HHHHHHHHHHCCCEEEEEeCC
Confidence 356777663 33333 257889999999999988753
No 376
>1jzt_A Hypothetical 27.5 kDa protein in SPX19-GCR2 inter region; yeast hypothetical protein, structural genomics, selenomethi PSI; 1.94A {Saccharomyces cerevisiae} SCOP: c.104.1.1
Probab=24.77 E-value=58 Score=28.64 Aligned_cols=34 Identities=12% Similarity=-0.002 Sum_probs=27.1
Q ss_pred cEEEEecCCCc--cCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 7 LQIAMFPWLAF--GHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 7 ~~il~~~~~~~--gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
.+|++++.++- |+ -+.+|+.|+++|++|+++...
T Consensus 59 ~~v~VlcG~GNNGGD---Glv~AR~L~~~G~~V~v~~~~ 94 (246)
T 1jzt_A 59 KHVFVIAGPGNNGGD---GLVCARHLKLFGYNPVVFYPK 94 (246)
T ss_dssp CEEEEEECSSHHHHH---HHHHHHHHHHTTCCEEEECCC
T ss_pred CeEEEEECCCCCHHH---HHHHHHHHHHCCCeEEEEEcC
Confidence 48999888765 33 378999999999999997643
No 377
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}
Probab=24.76 E-value=66 Score=29.17 Aligned_cols=33 Identities=12% Similarity=0.102 Sum_probs=23.1
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
|+|++..- .|.+ -..|++.|.++||+|+.+...
T Consensus 2 ~~ilVtGa--tG~i--G~~l~~~L~~~g~~V~~~~r~ 34 (330)
T 2c20_A 2 NSILICGG--AGYI--GSHAVKKLVDEGLSVVVVDNL 34 (330)
T ss_dssp CEEEEETT--TSHH--HHHHHHHHHHTTCEEEEEECC
T ss_pred CEEEEECC--CcHH--HHHHHHHHHhCCCEEEEEeCC
Confidence 67776633 2322 267899999999999988643
No 378
>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}
Probab=24.74 E-value=52 Score=30.13 Aligned_cols=33 Identities=9% Similarity=0.038 Sum_probs=27.1
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCC-CeEEEEeCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKG-HKIFFISTP 43 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rG-h~Vt~~~~~ 43 (478)
+|||.|+-.+..| ..+|+.|++.| |+|+++...
T Consensus 24 ~m~IgvIG~G~mG-----~~lA~~L~~~G~~~V~~~dr~ 57 (317)
T 4ezb_A 24 MTTIAFIGFGEAA-----QSIAGGLGGRNAARLAAYDLR 57 (317)
T ss_dssp CCEEEEECCSHHH-----HHHHHHHHTTTCSEEEEECGG
T ss_pred CCeEEEECccHHH-----HHHHHHHHHcCCCeEEEEeCC
Confidence 4789999877666 77899999999 999987654
No 379
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=24.70 E-value=75 Score=27.33 Aligned_cols=39 Identities=15% Similarity=0.289 Sum_probs=23.0
Q ss_pred CCccEEEEec-CCCc----cCHHH-HH-HHHHHHHhCCCeEEEEeC
Q 011765 4 NSKLQIAMFP-WLAF----GHMIP-WL-ELAKLIAQKGHKIFFIST 42 (478)
Q Consensus 4 ~~~~~il~~~-~~~~----gH~~p-~l-~La~~L~~rGh~Vt~~~~ 42 (478)
+.+||||++. .|-. +-++. ++ .+++.|.+.||+|.++--
T Consensus 23 ~~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL 68 (218)
T 3rpe_A 23 NAMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTV 68 (218)
T ss_dssp -CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred ccCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEEC
Confidence 3467898864 4432 33443 22 355666778999987553
No 380
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=24.70 E-value=56 Score=29.35 Aligned_cols=33 Identities=15% Similarity=0.051 Sum_probs=26.6
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
+++|+++--+.-| +..|..|+++|++|+++...
T Consensus 15 ~~~vvIIG~G~aG-----l~aA~~l~~~g~~v~lie~~ 47 (323)
T 3f8d_A 15 KFDVIIVGLGPAA-----YGAALYSARYMLKTLVIGET 47 (323)
T ss_dssp EEEEEEECCSHHH-----HHHHHHHHHTTCCEEEEESS
T ss_pred ccCEEEECccHHH-----HHHHHHHHHCCCcEEEEecc
Confidence 3588888777655 67889999999999999765
No 381
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=24.66 E-value=66 Score=29.34 Aligned_cols=36 Identities=22% Similarity=0.249 Sum_probs=23.6
Q ss_pred HHHhhcCCCEEEEcCCccc-HHHHHHHhCCCeEEEec
Q 011765 104 KLLQSLAPDWLLFDFAAYW-LPARARELGIPSGFFSI 139 (478)
Q Consensus 104 ~ll~~~~pD~vI~D~~~~~-~~~~A~~lgIP~i~~~~ 139 (478)
+.+.+.+||+||....... ...--+..|||++.+..
T Consensus 78 E~i~~l~PDlIi~~~~~~~~~~~~L~~~Gipvv~~~~ 114 (326)
T 3psh_A 78 ESLLALKPDVVFVTNYAPSEMIKQISDVNIPVVAISL 114 (326)
T ss_dssp HHHHHTCCSEEEEETTCCHHHHHHHHTTTCCEEEECS
T ss_pred HHHHccCCCEEEEeCCCChHHHHHHHHcCCCEEEEec
Confidence 3344679999998754321 23344677999998743
No 382
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Probab=24.62 E-value=51 Score=30.46 Aligned_cols=36 Identities=14% Similarity=0.190 Sum_probs=26.7
Q ss_pred CCccEEEEecCCCccCHHHHHHHHHHHHhCCC-eEEEEeCCC
Q 011765 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGH-KIFFISTPR 44 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh-~Vt~~~~~~ 44 (478)
+++|||.++--+..|.. +|..|+..|| +|+++....
T Consensus 7 ~~~~kI~VIGaG~vG~~-----lA~~la~~g~~~V~L~D~~~ 43 (331)
T 1pzg_A 7 QRRKKVAMIGSGMIGGT-----MGYLCALRELADVVLYDVVK 43 (331)
T ss_dssp SCCCEEEEECCSHHHHH-----HHHHHHHHTCCEEEEECSSS
T ss_pred CCCCEEEEECCCHHHHH-----HHHHHHhCCCCeEEEEECCh
Confidence 45689999865444433 8899999999 988876553
No 383
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=24.60 E-value=2e+02 Score=24.72 Aligned_cols=45 Identities=18% Similarity=0.143 Sum_probs=30.9
Q ss_pred hhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEE
Q 011765 264 WRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFF 310 (478)
Q Consensus 264 ~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i 310 (478)
.+.+.+|+.. .+.+++|..|+........+..+.+++++++..+.
T Consensus 21 ~~~l~~~~~~--~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~ 65 (229)
T 1fy2_A 21 LPLIANQLNG--RRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVT 65 (229)
T ss_dssp HHHHHHHHTT--CCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEE
T ss_pred HHHHHHHhcC--CCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 4447777753 34599999887543334667778999999887544
No 384
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=24.55 E-value=79 Score=28.24 Aligned_cols=39 Identities=13% Similarity=0.074 Sum_probs=31.0
Q ss_pred ccEEEEe--cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 6 KLQIAMF--PWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 6 ~~~il~~--~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
++|++.+ +-++.|-..-..+||..|+++|++|.++-.+.
T Consensus 3 M~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 43 (286)
T 2xj4_A 3 ETRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43 (286)
T ss_dssp -CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4555554 34577999999999999999999999987665
No 385
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=24.54 E-value=72 Score=29.09 Aligned_cols=35 Identities=14% Similarity=0.016 Sum_probs=24.3
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
++|+|++.-- .|.+ -..|++.|.++||+|+.+...
T Consensus 4 ~~~~vlVTGa--tG~i--G~~l~~~L~~~G~~V~~~~r~ 38 (341)
T 3enk_A 4 TKGTILVTGG--AGYI--GSHTAVELLAHGYDVVIADNL 38 (341)
T ss_dssp SSCEEEEETT--TSHH--HHHHHHHHHHTTCEEEEECCC
T ss_pred CCcEEEEecC--CcHH--HHHHHHHHHHCCCcEEEEecC
Confidence 3567776643 3322 257899999999999987643
No 386
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=24.52 E-value=3.8e+02 Score=23.95 Aligned_cols=104 Identities=8% Similarity=-0.050 Sum_probs=58.8
Q ss_pred CCccEEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCC---ccccCCCCCCCCCCCeEEEEecCCCCCCCCCCcc
Q 011765 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQK--GHKIFFISTPR---NIDRLPRLPQNLASMIQFVKISLPHVDNLRENAE 78 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~La~~L~~r--Gh~Vt~~~~~~---~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~ 78 (478)
..|+||+++..+. || -+.+|.++-... ..+|..+.+.. ..+..++.| +.+..+| .. ..
T Consensus 86 ~~~~ri~vl~Sg~-g~--nl~~ll~~~~~g~l~~~i~~Visn~~~a~~~~A~~~g------Ip~~~~~----~~----~~ 148 (287)
T 3nrb_A 86 TDRKKVVIMVSKF-DH--CLGDLLYRHRLGELDMEVVGIISNHPREALSVSLVGD------IPFHYLP----VT----PA 148 (287)
T ss_dssp TCCCEEEEEECSC-CH--HHHHHHHHHHHTSSCCEEEEEEESSCGGGCCCCCCTT------SCEEECC----CC----GG
T ss_pred CCCcEEEEEEeCC-Cc--CHHHHHHHHHCCCCCeEEEEEEeCChHHHHHHHHHcC------CCEEEEe----cc----Cc
Confidence 3578998776554 54 445666665543 35777655433 334444544 7777665 11 00
Q ss_pred ccCCCChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCc-ccHHHHHHHhCCCeEEEec
Q 011765 79 ATIDLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAA-YWLPARARELGIPSGFFSI 139 (478)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~-~~~~~~A~~lgIP~i~~~~ 139 (478)
.-....+.+.+++++.+||+||.=.+. .-...+-+.+.-.+|-+++
T Consensus 149 ---------------~r~~~~~~~~~~l~~~~~Dlivlagym~il~~~~l~~~~~~~iNiHp 195 (287)
T 3nrb_A 149 ---------------TKAAQESQIKNIVTQSQADLIVLARYMQILSDDLSAFLSGRCINIHH 195 (287)
T ss_dssp ---------------GHHHHHHHHHHHHHHHTCSEEEESSCCSCCCHHHHHHHTTSEEEEES
T ss_pred ---------------chhhHHHHHHHHHHHhCCCEEEhhhhhhhcCHHHHhhccCCeEEECc
Confidence 001123466777888899999987654 2334444555556666644
No 387
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=24.46 E-value=1.2e+02 Score=25.73 Aligned_cols=38 Identities=11% Similarity=-0.059 Sum_probs=27.1
Q ss_pred cEEEEecCC---------CccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 7 LQIAMFPWL---------AFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 7 ~~il~~~~~---------~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
+||+++... -.-...=+....+.|.+.|++|++++...
T Consensus 6 ~kv~ill~~~~~~~~~~~~G~~~~e~~~p~~~l~~ag~~v~~vs~~~ 52 (224)
T 1u9c_A 6 KRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQG 52 (224)
T ss_dssp CEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred ceEEEEECCcccccCCCCCceeHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 388887662 12234556677888889999999999764
No 388
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=24.43 E-value=1e+02 Score=28.86 Aligned_cols=89 Identities=9% Similarity=0.070 Sum_probs=45.4
Q ss_pred EEEEecCCCcc----------CHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCc
Q 011765 8 QIAMFPWLAFG----------HMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENA 77 (478)
Q Consensus 8 ~il~~~~~~~g----------H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~ 77 (478)
+++++++++.+ ....+..++++|.+.+.+|++.+.....+.+... .+++.+...
T Consensus 228 ~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~l~~~----~~~v~~~~~------------ 291 (398)
T 4fzr_A 228 PRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKLGFEVVVAVSDKLAQTLQPL----PEGVLAAGQ------------ 291 (398)
T ss_dssp CEEECC----------------CCSHHHHHHHGGGGTCEEEECCCC--------C----CTTEEEESC------------
T ss_pred CEEEEEccCcccccccccccchHHHHHHHHHHHHhCCCEEEEEeCCcchhhhccC----CCcEEEeCc------------
Confidence 56677777664 2334677788888778888887765432222211 122322210
Q ss_pred cccCCCChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEE
Q 011765 78 EATIDLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFF 137 (478)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~ 137 (478)
. .+.+++.. .|++|+..- .....-|-.+|+|.|.+
T Consensus 292 -----~-----------------~~~~ll~~--ad~~v~~gG-~~t~~Ea~~~G~P~v~~ 326 (398)
T 4fzr_A 292 -----F-----------------PLSAIMPA--CDVVVHHGG-HGTTLTCLSEGVPQVSV 326 (398)
T ss_dssp -----C-----------------CHHHHGGG--CSEEEECCC-HHHHHHHHHTTCCEEEC
T ss_pred -----C-----------------CHHHHHhh--CCEEEecCC-HHHHHHHHHhCCCEEec
Confidence 0 11223332 799998743 23456677899999986
No 389
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=24.38 E-value=80 Score=29.81 Aligned_cols=44 Identities=9% Similarity=-0.075 Sum_probs=25.4
Q ss_pred hhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEE
Q 011765 265 RSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFF 310 (478)
Q Consensus 265 ~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i 310 (478)
+++.+++...+.+++++|+-+++. .......+.+.|++.+..+.
T Consensus 20 ~~l~~~~~~~g~~~~liVtd~~~~--~~g~~~~v~~~L~~~gi~~~ 63 (383)
T 3ox4_A 20 EKAIKDLNGSGFKNALIVSDAFMN--KSGVVKQVADLLKAQGINSA 63 (383)
T ss_dssp HHHHHTTTTSCCCEEEEEEEHHHH--HTTHHHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHHcCCCEEEEEECCchh--hCchHHHHHHHHHHcCCeEE
Confidence 345556655554556777655432 11246667788887777654
No 390
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=24.25 E-value=44 Score=30.20 Aligned_cols=33 Identities=9% Similarity=0.109 Sum_probs=26.6
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
+|||.|+-.+..|. .+|+.|+++||+|+++...
T Consensus 15 ~~~I~vIG~G~mG~-----~~A~~l~~~G~~V~~~dr~ 47 (296)
T 3qha_A 15 QLKLGYIGLGNMGA-----PMATRMTEWPGGVTVYDIR 47 (296)
T ss_dssp CCCEEEECCSTTHH-----HHHHHHTTSTTCEEEECSS
T ss_pred CCeEEEECcCHHHH-----HHHHHHHHCCCeEEEEeCC
Confidence 46899998777764 6899999999999987543
No 391
>3fet_A Electron transfer flavoprotein subunit alpha RELA protein; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: MSE; 2.05A {Thermoplasma acidophilum}
Probab=24.25 E-value=1.2e+02 Score=24.66 Aligned_cols=40 Identities=10% Similarity=0.022 Sum_probs=29.4
Q ss_pred hhHHHHHHHhhcCCCEEEEcCCcc---cHHHHHHHhCCCeEEEec
Q 011765 98 LEEPMAKLLQSLAPDWLLFDFAAY---WLPARARELGIPSGFFSI 139 (478)
Q Consensus 98 ~~~~l~~ll~~~~pD~vI~D~~~~---~~~~~A~~lgIP~i~~~~ 139 (478)
..+.+.++++ +||+|++..... .+..+|.+|++|++.-.+
T Consensus 59 ~a~~l~~~~~--~p~~Vl~g~t~~g~~vaprlAa~L~~~~~sdv~ 101 (166)
T 3fet_A 59 VSEGILKIAG--NYDYIAIGSTEVGREIAGYLSFKTGFYTATEIF 101 (166)
T ss_dssp HHHHHHHHHT--TCSEEEEECSHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred HHHHHHHHHc--CCCEEEEcCCCccccHHHHHHHHhCCCceeeEE
Confidence 4445666666 899999886433 245789999999998755
No 392
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=24.15 E-value=60 Score=30.59 Aligned_cols=39 Identities=26% Similarity=0.266 Sum_probs=28.6
Q ss_pred CCCCCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 1 MADNSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 1 ~~~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
|...++.+|+++--+--| +.+|..|+++|++|+++-...
T Consensus 21 M~~~~~~dV~IVGaG~aG-----l~~A~~L~~~G~~v~v~E~~~ 59 (398)
T 2xdo_A 21 MNLLSDKNVAIIGGGPVG-----LTMAKLLQQNGIDVSVYERDN 59 (398)
T ss_dssp --CCTTCEEEEECCSHHH-----HHHHHHHHTTTCEEEEEECSS
T ss_pred ccccCCCCEEEECCCHHH-----HHHHHHHHHCCCCEEEEeCCC
Confidence 444445689888777555 778999999999999987543
No 393
>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*
Probab=24.14 E-value=54 Score=29.42 Aligned_cols=31 Identities=13% Similarity=0.310 Sum_probs=24.8
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFIST 42 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~ 42 (478)
|||.|+-.+..|. .+|+.|.+.||+|+++..
T Consensus 1 m~i~iiG~G~mG~-----~~a~~l~~~g~~V~~~~~ 31 (296)
T 2gf2_A 1 MPVGFIGLGNMGN-----PMAKNLMKHGYPLIIYDV 31 (296)
T ss_dssp CCEEEECCSTTHH-----HHHHHHHHTTCCEEEECS
T ss_pred CeEEEEeccHHHH-----HHHHHHHHCCCEEEEEeC
Confidence 6788887777764 578899999999988754
No 394
>3ga2_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Bacillus subtilis}
Probab=24.11 E-value=84 Score=27.52 Aligned_cols=30 Identities=33% Similarity=0.325 Sum_probs=22.6
Q ss_pred cCCCEEEEcCCcc-------cHHHHHHHhCCCeEEEe
Q 011765 109 LAPDWLLFDFAAY-------WLPARARELGIPSGFFS 138 (478)
Q Consensus 109 ~~pD~vI~D~~~~-------~~~~~A~~lgIP~i~~~ 138 (478)
.+||++++|.... -|..+.-.+++|.|.+.
T Consensus 108 ~~PdlllvDG~GiaHPRr~GlAsHlGv~l~~PtIGVA 144 (246)
T 3ga2_A 108 TEPDVFLFDGNGYLHYNHMGVATHAAFFLGKPTIGIA 144 (246)
T ss_dssp SCCSCEEEEBCSSSSTTSCCHHHHHHHHHTSCEEEEE
T ss_pred CCCCEEEEcCcEEecCCCcchhheeeeecCCCEEeee
Confidence 4799999996332 35567778899999883
No 395
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=24.06 E-value=1.5e+02 Score=21.43 Aligned_cols=39 Identities=15% Similarity=0.100 Sum_probs=24.8
Q ss_pred HHHHHhhcCCCEEEEcCCcc--cHHHHHHH-----hCCCeEEEecc
Q 011765 102 MAKLLQSLAPDWLLFDFAAY--WLPARARE-----LGIPSGFFSIF 140 (478)
Q Consensus 102 l~~ll~~~~pD~vI~D~~~~--~~~~~A~~-----lgIP~i~~~~~ 140 (478)
..+.++...||+||.|...+ .+..+.+. -.+|++.+...
T Consensus 36 a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 81 (121)
T 2pl1_A 36 ADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTAR 81 (121)
T ss_dssp HHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEESC
T ss_pred HHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEecC
Confidence 34455667899999997554 34433333 25788877654
No 396
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=24.04 E-value=59 Score=30.20 Aligned_cols=35 Identities=14% Similarity=0.210 Sum_probs=24.8
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQK-GHKIFFISTPR 44 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~r-Gh~Vt~~~~~~ 44 (478)
+|+|++.. +.|.+- ..|+++|.++ ||+|+.++...
T Consensus 24 ~~~vlVtG--atG~iG--~~l~~~L~~~~g~~V~~~~r~~ 59 (372)
T 3slg_A 24 AKKVLILG--VNGFIG--HHLSKRILETTDWEVFGMDMQT 59 (372)
T ss_dssp CCEEEEES--CSSHHH--HHHHHHHHHHSSCEEEEEESCC
T ss_pred CCEEEEEC--CCChHH--HHHHHHHHhCCCCEEEEEeCCh
Confidence 56777764 333332 5788999998 99999987543
No 397
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=23.98 E-value=1.1e+02 Score=23.30 Aligned_cols=37 Identities=16% Similarity=0.020 Sum_probs=23.3
Q ss_pred HHHHhhcCCCEEEEcCCcc--cHHHHHHHh-----CCCeEEEec
Q 011765 103 AKLLQSLAPDWLLFDFAAY--WLPARAREL-----GIPSGFFSI 139 (478)
Q Consensus 103 ~~ll~~~~pD~vI~D~~~~--~~~~~A~~l-----gIP~i~~~~ 139 (478)
.+.++..+||+||.|...+ .+..+++.+ ++|+|.+..
T Consensus 42 l~~~~~~~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii~ls~ 85 (141)
T 3cu5_A 42 IQIALKHPPNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFMSG 85 (141)
T ss_dssp HHHHTTSCCSEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEECC
T ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeC
Confidence 3455667899999997554 344444332 577777644
No 398
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=23.94 E-value=76 Score=31.39 Aligned_cols=42 Identities=10% Similarity=0.084 Sum_probs=35.4
Q ss_pred ccEEEEecCC---CccCHHHHHHHHHHHHhCCCeEEEEeCCCccc
Q 011765 6 KLQIAMFPWL---AFGHMIPWLELAKLIAQKGHKIFFISTPRNID 47 (478)
Q Consensus 6 ~~~il~~~~~---~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 47 (478)
+||.+|++.+ +.|--.-..+|+.-|..||++||..=-+++..
T Consensus 2 ~~k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~~~k~dpyln 46 (535)
T 3nva_A 2 PNKYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTAVKIDPYIN 46 (535)
T ss_dssp CCEEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEEEEEEECSSS
T ss_pred CceEEEEeCccccCcchHHHHHHHHHHHHHCCceEEEEecCccee
Confidence 4689998876 55778889999999999999999988777755
No 399
>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}
Probab=23.93 E-value=72 Score=28.89 Aligned_cols=29 Identities=17% Similarity=0.370 Sum_probs=24.6
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 011765 8 QIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFIS 41 (478)
Q Consensus 8 ~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~ 41 (478)
||.|+-.+..|. ++|+.|.++||+|+++-
T Consensus 7 kIgfIGLG~MG~-----~mA~~L~~~G~~V~v~d 35 (297)
T 4gbj_A 7 KIAFLGLGNLGT-----PIAEILLEAGYELVVWN 35 (297)
T ss_dssp EEEEECCSTTHH-----HHHHHHHHTTCEEEEC-
T ss_pred cEEEEecHHHHH-----HHHHHHHHCCCeEEEEe
Confidence 899998887774 68999999999999764
No 400
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=23.90 E-value=1.1e+02 Score=22.66 Aligned_cols=39 Identities=10% Similarity=-0.142 Sum_probs=24.1
Q ss_pred HHHHHHhhcCCCEEEEcCCcc--cHHHHHHH-------hCCCeEEEec
Q 011765 101 PMAKLLQSLAPDWLLFDFAAY--WLPARARE-------LGIPSGFFSI 139 (478)
Q Consensus 101 ~l~~ll~~~~pD~vI~D~~~~--~~~~~A~~-------lgIP~i~~~~ 139 (478)
...+.+++.+||+||.|...+ .+..+.+. .++|+|.+..
T Consensus 38 ~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~ 85 (127)
T 3i42_A 38 DALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSG 85 (127)
T ss_dssp HHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEEC
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEEC
Confidence 344455677899999997543 34443332 3477777654
No 401
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=23.88 E-value=56 Score=30.91 Aligned_cols=35 Identities=14% Similarity=0.035 Sum_probs=26.7
Q ss_pred CCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
.++++|+++--+--| +.+|..|+++|++|+++-..
T Consensus 21 ~~~~dV~IVGaG~aG-----l~~A~~La~~G~~V~v~E~~ 55 (407)
T 3rp8_A 21 QGHMKAIVIGAGIGG-----LSAAVALKQSGIDCDVYEAV 55 (407)
T ss_dssp --CCEEEEECCSHHH-----HHHHHHHHHTTCEEEEEESS
T ss_pred CCCCEEEEECCCHHH-----HHHHHHHHhCCCCEEEEeCC
Confidence 336899998766444 78899999999999998654
No 402
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=23.87 E-value=26 Score=31.73 Aligned_cols=33 Identities=21% Similarity=0.144 Sum_probs=27.1
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
+|||+++-.++.|- .+|..|.+.||+|+++...
T Consensus 2 ~mkI~iiGaGa~G~-----~~a~~L~~~g~~V~~~~r~ 34 (294)
T 3g17_A 2 SLSVAIIGPGAVGT-----TIAYELQQSLPHTTLIGRH 34 (294)
T ss_dssp -CCEEEECCSHHHH-----HHHHHHHHHCTTCEEEESS
T ss_pred CcEEEEECCCHHHH-----HHHHHHHHCCCeEEEEEec
Confidence 47999998888774 5788899999999998765
No 403
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=23.81 E-value=62 Score=26.50 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=29.5
Q ss_pred EEEEecCCCc---cCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 011765 8 QIAMFPWLAF---GHMIPWLELAKLIAQKGHKIFFISTPRN 45 (478)
Q Consensus 8 ~il~~~~~~~---gH~~p~l~La~~L~~rGh~Vt~~~~~~~ 45 (478)
+|+|+|.-+. ---++...|++.|.++|.+|.|..++-.
T Consensus 32 ~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVA 72 (186)
T 2bru_C 32 SVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVA 72 (186)
T ss_dssp EEEEECSBHHHHTTTHHHHHHHHHHHHHHCCEEEEEECSSS
T ss_pred eEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEecccc
Confidence 6777765432 2356899999999999999999988764
No 404
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=23.77 E-value=88 Score=25.45 Aligned_cols=39 Identities=5% Similarity=-0.145 Sum_probs=25.2
Q ss_pred HHHHHhhcCCCEEEEcCCcc--cHHHHHHH-----hCCCeEEEecc
Q 011765 102 MAKLLQSLAPDWLLFDFAAY--WLPARARE-----LGIPSGFFSIF 140 (478)
Q Consensus 102 l~~ll~~~~pD~vI~D~~~~--~~~~~A~~-----lgIP~i~~~~~ 140 (478)
..+.++..+||+||.|...+ .|..+++. -++|+|.++..
T Consensus 43 al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~lt~~ 88 (184)
T 3rqi_A 43 ALKLAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQPDARILVLTGY 88 (184)
T ss_dssp HHHHHTTSCCSEEEECSEETTEESHHHHHHHHHHCTTCEEEEEESS
T ss_pred HHHHHhhCCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEEEeCC
Confidence 34456677899999997654 24444332 35888877654
No 405
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}
Probab=23.74 E-value=66 Score=28.80 Aligned_cols=35 Identities=9% Similarity=0.125 Sum_probs=24.4
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
+|+|++.. +.|.+ -..|+++|.++||+|+.++-..
T Consensus 2 ~~~vlVtG--atG~i--G~~l~~~L~~~g~~V~~~~R~~ 36 (307)
T 2gas_A 2 ENKILILG--PTGAI--GRHIVWASIKAGNPTYALVRKT 36 (307)
T ss_dssp CCCEEEES--TTSTT--HHHHHHHHHHHTCCEEEEECCS
T ss_pred CcEEEEEC--CCchH--HHHHHHHHHhCCCcEEEEECCC
Confidence 45776663 34444 2467899999999999887653
No 406
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=23.66 E-value=1.6e+02 Score=21.15 Aligned_cols=32 Identities=6% Similarity=-0.041 Sum_probs=24.2
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFIST 42 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~ 42 (478)
.+|+++|..+ ......+..|.+.|++|..+..
T Consensus 57 ~~ivvyC~~g----~rs~~a~~~L~~~G~~v~~l~G 88 (100)
T 3foj_A 57 ETYYIICKAG----GRSAQVVQYLEQNGVNAVNVEG 88 (100)
T ss_dssp SEEEEECSSS----HHHHHHHHHHHTTTCEEEEETT
T ss_pred CcEEEEcCCC----chHHHHHHHHHHCCCCEEEecc
Confidence 5788888543 4677889999999998876643
No 407
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=23.65 E-value=1.4e+02 Score=22.04 Aligned_cols=38 Identities=24% Similarity=0.058 Sum_probs=23.6
Q ss_pred HHHHHhhc-CCCEEEEcCCcc---cHHHHHHHh-----CCCeEEEec
Q 011765 102 MAKLLQSL-APDWLLFDFAAY---WLPARAREL-----GIPSGFFSI 139 (478)
Q Consensus 102 l~~ll~~~-~pD~vI~D~~~~---~~~~~A~~l-----gIP~i~~~~ 139 (478)
..+.++.. +||+||.|...+ .+..+.+.+ ++|+|.+..
T Consensus 41 a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s~ 87 (132)
T 2rdm_A 41 AIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVYISG 87 (132)
T ss_dssp HHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEeC
Confidence 33445555 899999996543 244333332 588888755
No 408
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=23.60 E-value=80 Score=26.98 Aligned_cols=34 Identities=15% Similarity=0.194 Sum_probs=24.8
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
||.++++..+.| =-..+|+.|.++|++|++....
T Consensus 2 ~k~vlITGas~g---IG~~ia~~l~~~G~~V~~~~r~ 35 (235)
T 3l77_A 2 MKVAVITGASRG---IGEAIARALARDGYALALGARS 35 (235)
T ss_dssp CCEEEEESCSSH---HHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECCCcH---HHHHHHHHHHHCCCEEEEEeCC
Confidence 566666655543 2468899999999999887654
No 409
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=23.55 E-value=62 Score=29.26 Aligned_cols=33 Identities=15% Similarity=0.312 Sum_probs=26.3
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
.+||.++-.+..|+ .+|..|+++||+|+++...
T Consensus 15 ~~~I~VIG~G~mG~-----~iA~~la~~G~~V~~~d~~ 47 (302)
T 1f0y_A 15 VKHVTVIGGGLMGA-----GIAQVAAATGHTVVLVDQT 47 (302)
T ss_dssp CCEEEEECCSHHHH-----HHHHHHHHTTCEEEEECSC
T ss_pred CCEEEEECCCHHHH-----HHHHHHHhCCCeEEEEECC
Confidence 46899998777665 5889999999999987543
No 410
>3zzm_A Bifunctional purine biosynthesis protein PURH; transferase, hydrolase; HET: JLN; 2.20A {Mycobacterium tuberculosis} PDB: 4a1o_A*
Probab=23.25 E-value=83 Score=30.82 Aligned_cols=50 Identities=16% Similarity=0.218 Sum_probs=35.2
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCccccCCCCCCCCCCCeEEEEe
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNIDRLPRLPQNLASMIQFVKI 65 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i 65 (478)
.+||-+|++.. +=.-++.+|+.|.+.|.++. ++.-....+++.| +.+..+
T Consensus 8 ~~i~~aLISVs---DK~glvelAk~L~~lGfeI~--ATgGTak~L~e~G------I~v~~V 57 (523)
T 3zzm_A 8 RPIRRALISVY---DKTGLVDLAQGLSAAGVEII--STGSTAKTIADTG------IPVTPV 57 (523)
T ss_dssp CCCCEEEEEES---SCTTHHHHHHHHHHTTCEEE--ECHHHHHHHHTTT------CCCEEH
T ss_pred ccccEEEEEEe---ccccHHHHHHHHHHCCCEEE--EcchHHHHHHHcC------Cceeec
Confidence 35666666663 33447889999999998875 5666666777777 776655
No 411
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=23.20 E-value=46 Score=27.33 Aligned_cols=34 Identities=12% Similarity=0.087 Sum_probs=25.6
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQK-GHKIFFISTPR 44 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~r-Gh~Vt~~~~~~ 44 (478)
++||+++..+..| ..+|+.|.++ ||+|+++....
T Consensus 39 ~~~v~IiG~G~~G-----~~~a~~L~~~~g~~V~vid~~~ 73 (183)
T 3c85_A 39 HAQVLILGMGRIG-----TGAYDELRARYGKISLGIEIRE 73 (183)
T ss_dssp TCSEEEECCSHHH-----HHHHHHHHHHHCSCEEEEESCH
T ss_pred CCcEEEECCCHHH-----HHHHHHHHhccCCeEEEEECCH
Confidence 4689988554334 5678999999 99999987653
No 412
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=23.18 E-value=72 Score=31.64 Aligned_cols=35 Identities=17% Similarity=0.027 Sum_probs=30.2
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
.+||.|+..++.| |..+|+.|.++|++|+..-...
T Consensus 19 ~~~i~~iGiGg~G----ms~lA~~l~~~G~~V~~sD~~~ 53 (524)
T 3hn7_A 19 GMHIHILGICGTF----MGSLALLARALGHTVTGSDANI 53 (524)
T ss_dssp CCEEEEETTTSHH----HHHHHHHHHHTTCEEEEEESCC
T ss_pred CCEEEEEEecHhh----HHHHHHHHHhCCCEEEEECCCC
Confidence 5799999999887 7789999999999999876543
No 413
>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A
Probab=23.14 E-value=1.8e+02 Score=23.77 Aligned_cols=47 Identities=13% Similarity=0.237 Sum_probs=32.4
Q ss_pred HHHhhhhHHHHHHHhhcCCCEEEEcCCcc-------------c--HHHHHHHhCCCeEEEec
Q 011765 93 QSFDCLEEPMAKLLQSLAPDWLLFDFAAY-------------W--LPARARELGIPSGFFSI 139 (478)
Q Consensus 93 ~~~~~~~~~l~~ll~~~~pD~vI~D~~~~-------------~--~~~~A~~lgIP~i~~~~ 139 (478)
.....+...+.+++++.+||.+..+..++ . ++.++...|||+.-+.+
T Consensus 46 ~RL~~I~~~l~~~i~~~~Pd~vaiE~~F~~~n~~sal~lgqarGv~~la~~~~glpv~eytP 107 (166)
T 4ep4_A 46 ERVGRIHARVLEVLHRFRPEAVAVEEQFFYRQNELAYKVGWALGAVLVAAFEAGVPVYAYGP 107 (166)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEEECCCCSSCSHHHHHHHHHHHHHHHHHHHHTCCEEEECH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeehhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECH
Confidence 44455667888888999999997664221 1 23456788999988754
No 414
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=23.14 E-value=63 Score=28.47 Aligned_cols=33 Identities=18% Similarity=0.091 Sum_probs=24.9
Q ss_pred CCCEEE-EcCCcc-cHHHHHHHhCCCeEEEecchH
Q 011765 110 APDWLL-FDFAAY-WLPARARELGIPSGFFSIFTA 142 (478)
Q Consensus 110 ~pD~vI-~D~~~~-~~~~~A~~lgIP~i~~~~~~~ 142 (478)
.||+|| .|+..- -++.=|.++|||+|.+..+++
T Consensus 151 ~PdlliV~Dp~~e~~AI~EA~~lgIPvIalvDTn~ 185 (253)
T 3bch_A 151 EPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDS 185 (253)
T ss_dssp SCSEEEESCTTTTHHHHHHHHHTTCCEEEEECTTC
T ss_pred CCCEEEEECCCccchHHHHHHHhCCCEEEEEcCCC
Confidence 699986 565332 467779999999999977554
No 415
>2wam_A RV2714, conserved hypothetical alanine and leucine rich protein; unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=23.07 E-value=4.5e+02 Score=24.31 Aligned_cols=169 Identities=14% Similarity=0.124 Sum_probs=80.5
Q ss_pred CceEEEEeCcccCCC-HHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCC
Q 011765 277 GSVVYVAFGSEAKPS-QEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHD 355 (478)
Q Consensus 277 ~~~v~vs~Gs~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~ 355 (478)
++++++ .|-..... ..+...+++-+++.+++.++.+++- ....|- .++-.+.. .....+++...
T Consensus 142 ~~~LlL-~G~eP~~~w~~fa~~vl~~a~~~gV~~vvtLggl-------p~~vph-----tRp~~V~~--~at~~el~~~~ 206 (351)
T 2wam_A 142 TPFLLL-AGLEPDLKWERFITAVRLLAERLGVRQTIGLGTV-------PMAVPH-----TRPITMTA--HSNNRELISDF 206 (351)
T ss_dssp CEEEEE-EEECCSBCHHHHHHHHHHHHHHTTCCEEEEEEEE-------EESCCT-----TSCCCEEE--EESSGGGGTTS
T ss_pred CcEEEE-ECCCChhHHHHHHHHHHHHHHHhCCCEEEEEecc-------cCCCCC-----ccCcceEE--EECCHHHHHhc
Confidence 334444 45544333 3555557777789999988777642 112221 01112222 12233333222
Q ss_pred Cc--eeeeeccChhhHH--HHHHhCCcEecc----ccccch---hhHHHHH-hhc--CeEEEeeccCCCCcc--cHHHHH
Q 011765 356 SV--GGFLTHAGWSSVV--EALQFGMPLIVL----TCYADQ---GLNAKLL-EEK--QIVELIPRDEGDGFF--TRNSVA 419 (478)
Q Consensus 356 ~~--~~~ItHgG~~s~~--eal~~GvP~l~~----P~~~DQ---~~na~~v-~~~--g~G~~l~~~~~~~~~--~~~~l~ 419 (478)
.+ .-+-.=+|.+++. ++-..|+|.+++ |.+.=| |.=|..+ +.+ =+|+.++..+ + .+++++
T Consensus 207 ~~~~~~~~gp~GisglL~~~~~~~Gi~a~~l~~~vP~Yla~~pdP~AA~alL~~L~~llgl~ip~~~----L~e~Ae~ie 282 (351)
T 2wam_A 207 QPSISEIQVPGSASNLLEYRMAQHGHEVVGFTVHVPHYLTQTDYPAAAQALLEQVAKTGSLQLPLAV----LAEAAAEVQ 282 (351)
T ss_dssp CCCCCSEEEECCHHHHHHHHHHHTTCCEEEEEEEEEGGGTTSCCHHHHHHHHHHHHHHHTCCCCCHH----HHHHHHHHH
T ss_pred CCccCcccccccHHHHHHHHHHHcCCCEEEEEEeCCccccCCCCHHHHHHHHHHHHHHHCCCCCHHH----HHHHHHHHH
Confidence 21 0022234544444 567889999887 554322 3333333 222 1244454433 2 457788
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHHh---c-------------ccCChHHHHHHHHHHHHhcc
Q 011765 420 ESLRLVLVEEKGQIYRDKAKEMKGLF---G-------------DKGRHDRYVDNFLNYLKNHR 466 (478)
Q Consensus 420 ~~i~~ll~~~~~~~~~~~a~~~~~~~---~-------------~~~~~~~~~~~i~~~~~~~~ 466 (478)
+.|+++.++ +++..+-++.+-+.. . +.++.+..+.+|++++.+..
T Consensus 283 ~~i~el~~~--~~e~~~~V~~LE~qyD~~~~~~~~~~l~~~~~~~ps~dei~~efErfL~~~~ 343 (351)
T 2wam_A 283 AKIDEQVQA--SAEVAQVVAALERQYDAFIDAQENRSLLTRDEDLPSGDELGAEFERFLAQQA 343 (351)
T ss_dssp HHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHTTC-------------CHHHHHHHHHHH
T ss_pred HHHHHHHHh--CHHHHHHHHHHHhhhchhhhhcccccccccccCCCCHHHHHHHHHHHHHhcC
Confidence 888888874 555444333332221 0 12445666678888887553
No 416
>3m3h_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine ribonucleotide biosynthesis, structural genomics, infectious diseases; 1.75A {Bacillus anthracis} PDB: 3osc_A*
Probab=23.05 E-value=1.3e+02 Score=26.04 Aligned_cols=28 Identities=4% Similarity=-0.002 Sum_probs=20.8
Q ss_pred CCCEEEEcCC--cccHHHHHHHhCCCeEEE
Q 011765 110 APDWLLFDFA--AYWLPARARELGIPSGFF 137 (478)
Q Consensus 110 ~pD~vI~D~~--~~~~~~~A~~lgIP~i~~ 137 (478)
++|+|+.=.. .+.+..+|..+++|++.+
T Consensus 88 ~~D~Ivg~~~gGi~~a~~lA~~L~~p~~~v 117 (234)
T 3m3h_A 88 TVEVIAGTATAGIAHAAWVSDRMDLPMCYV 117 (234)
T ss_dssp TCCEEEEC---CHHHHHHHHHHHTCCEEEE
T ss_pred CCCEEEEeccchHHHHHHHHHHcCCCEEEE
Confidence 7899986543 345778899999998765
No 417
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=23.02 E-value=86 Score=27.96 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=30.4
Q ss_pred cE-EEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 7 LQ-IAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 7 ~~-il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
|| |.+..-++.|-..-..+||..|+++|++|.++-.+.
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~ 40 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP 40 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 45 445555677999999999999999999999886554
No 418
>3dez_A OPRT, oprtase, orotate phosphoribosyltransferase; glycosyltransferase, MAGN pyrimidine biosynthesis; 2.40A {Streptococcus mutans}
Probab=22.88 E-value=1.4e+02 Score=26.09 Aligned_cols=28 Identities=7% Similarity=0.031 Sum_probs=21.4
Q ss_pred CCCEEEEcCC--cccHHHHHHHhCCCeEEE
Q 011765 110 APDWLLFDFA--AYWLPARARELGIPSGFF 137 (478)
Q Consensus 110 ~pD~vI~D~~--~~~~~~~A~~lgIP~i~~ 137 (478)
++|+|+.=.. .+.+..+|+.+++|++.+
T Consensus 100 ~~DvIvg~~~gGi~~A~~lA~~L~~p~~~v 129 (243)
T 3dez_A 100 EVEVIAGTATAGIPHGAIIADKMNLPLAYI 129 (243)
T ss_dssp TCCEEEEETTTTHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEecCchHHHHHHHHHHcCCCEEEE
Confidence 7899986543 235778899999998765
No 419
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=22.88 E-value=65 Score=27.39 Aligned_cols=37 Identities=0% Similarity=-0.054 Sum_probs=20.7
Q ss_pred CccEEEEecCCCc----cCHHHHH-HHHHHHHhC--CCeEEEEe
Q 011765 5 SKLQIAMFPWLAF----GHMIPWL-ELAKLIAQK--GHKIFFIS 41 (478)
Q Consensus 5 ~~~~il~~~~~~~----gH~~p~l-~La~~L~~r--Gh~Vt~~~ 41 (478)
.+||||++...-. |.-.-+. .+++.|.++ ||+|+++-
T Consensus 3 mM~kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~d 46 (211)
T 3p0r_A 3 AMTKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELD 46 (211)
T ss_dssp -CCEEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred ccCEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 3679988744433 3333332 345556555 88887744
No 420
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Probab=22.70 E-value=68 Score=28.42 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=24.0
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFIST 42 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~ 42 (478)
|||.|+..+..| ..+|+.|.+.||+|+++..
T Consensus 1 m~i~iiG~G~~G-----~~~a~~l~~~g~~V~~~~~ 31 (279)
T 2f1k_A 1 MKIGVVGLGLIG-----ASLAGDLRRRGHYLIGVSR 31 (279)
T ss_dssp CEEEEECCSHHH-----HHHHHHHHHTTCEEEEECS
T ss_pred CEEEEEcCcHHH-----HHHHHHHHHCCCEEEEEEC
Confidence 688888765555 4678899999999988754
No 421
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Probab=22.64 E-value=68 Score=29.26 Aligned_cols=37 Identities=14% Similarity=0.081 Sum_probs=21.4
Q ss_pred CCCCCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011765 1 MADNSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFIST 42 (478)
Q Consensus 1 ~~~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~ 42 (478)
|+. ++++||+.. +.|.+- ..|+++|.++||+|+.++-
T Consensus 1 ~~~-~~~~vlVTG--atGfIG--~~l~~~L~~~G~~V~~~~r 37 (337)
T 2c29_D 1 MGS-QSETVCVTG--ASGFIG--SWLVMRLLERGYTVRATVR 37 (337)
T ss_dssp ------CEEEETT--TTSHHH--HHHHHHHHHTTCEEEEEES
T ss_pred CCC-CCCEEEEEC--CchHHH--HHHHHHHHHCCCEEEEEEC
Confidence 554 234555543 333332 5688999999999987654
No 422
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=22.63 E-value=1.1e+02 Score=27.70 Aligned_cols=40 Identities=28% Similarity=0.290 Sum_probs=31.8
Q ss_pred ccEEEEec--CCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 011765 6 KLQIAMFP--WLAFGHMIPWLELAKLIAQKGHKIFFISTPRN 45 (478)
Q Consensus 6 ~~~il~~~--~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~ 45 (478)
++|+++++ -++.|-..-..+||..|+++|.+|.++-.+..
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r 144 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLR 144 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 45555443 46789999999999999999999999876653
No 423
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=22.63 E-value=51 Score=30.87 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=26.2
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
+|||.|+-.+..| ..+|+.|+++||+|+++...
T Consensus 22 ~mkIgiIGlG~mG-----~~~A~~L~~~G~~V~v~dr~ 54 (358)
T 4e21_A 22 SMQIGMIGLGRMG-----ADMVRRLRKGGHECVVYDLN 54 (358)
T ss_dssp CCEEEEECCSHHH-----HHHHHHHHHTTCEEEEECSC
T ss_pred CCEEEEECchHHH-----HHHHHHHHhCCCEEEEEeCC
Confidence 4799999766555 47899999999999987644
No 424
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A
Probab=22.60 E-value=77 Score=28.85 Aligned_cols=32 Identities=22% Similarity=0.181 Sum_probs=21.6
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFIST 42 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~ 42 (478)
++||+.. +.|.+- ..|+++|.++||+|+.+..
T Consensus 10 ~~vlVTG--atGfIG--~~l~~~Ll~~G~~V~~~~r 41 (338)
T 2rh8_A 10 KTACVVG--GTGFVA--SLLVKLLLQKGYAVNTTVR 41 (338)
T ss_dssp CEEEEEC--TTSHHH--HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEEC--CchHHH--HHHHHHHHHCCCEEEEEEc
Confidence 5666553 333222 4688999999999997654
No 425
>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A {Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 4dbl_E 1n4a_A* 1n4d_A
Probab=22.59 E-value=79 Score=27.35 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=22.1
Q ss_pred HHHhhcCCCEEEEcCCcc--cHHHHHHHhCCCeEEEe
Q 011765 104 KLLQSLAPDWLLFDFAAY--WLPARARELGIPSGFFS 138 (478)
Q Consensus 104 ~ll~~~~pD~vI~D~~~~--~~~~~A~~lgIP~i~~~ 138 (478)
+.+.+.+||+||...... ....--+..|||++.+.
T Consensus 51 E~i~~l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~~ 87 (245)
T 1n2z_A 51 ERIVALKPDLVIAWRGGNAERQVDQLASLGIKVMWVD 87 (245)
T ss_dssp HHHHHTCCSEEEECTTTSCHHHHHHHHHHTCCEEECC
T ss_pred HHHhccCCCEEEEeCCCCcHHHHHHHHHCCCcEEEeC
Confidence 334467999999853221 12334467899998764
No 426
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=22.55 E-value=71 Score=27.50 Aligned_cols=39 Identities=10% Similarity=-0.019 Sum_probs=21.5
Q ss_pred CCCccEEEEecCCCc-----cCHHHHH-HHHHHHHhC--CC-eEEEEe
Q 011765 3 DNSKLQIAMFPWLAF-----GHMIPWL-ELAKLIAQK--GH-KIFFIS 41 (478)
Q Consensus 3 ~~~~~~il~~~~~~~-----gH~~p~l-~La~~L~~r--Gh-~Vt~~~ 41 (478)
+|.+||||++...-. |.-.-+. .+++.|.++ || +|+++-
T Consensus 1 ~~~MmkIL~I~gSpr~~~~~S~s~~L~~~~~~~l~~~~~~~~ev~~id 48 (223)
T 3u7i_A 1 SNAMNKTLIINAHPKVDDTSSVSIKVFKHFLESYKELISNNETIEQIN 48 (223)
T ss_dssp --CCCEEEEEECCTTTTCTTSHHHHHHHHHHHHHHHHCCSSCEEEEEE
T ss_pred CCccCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence 356789988744432 3333333 345556554 58 887754
No 427
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=22.55 E-value=68 Score=29.39 Aligned_cols=35 Identities=9% Similarity=-0.005 Sum_probs=23.5
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
+|+||+..- .|.+ -..|++.|.++||+|+.+....
T Consensus 19 ~~~vlVtGa--tG~i--G~~l~~~L~~~G~~V~~~~r~~ 53 (347)
T 4id9_A 19 SHMILVTGS--AGRV--GRAVVAALRTQGRTVRGFDLRP 53 (347)
T ss_dssp --CEEEETT--TSHH--HHHHHHHHHHTTCCEEEEESSC
T ss_pred CCEEEEECC--CChH--HHHHHHHHHhCCCEEEEEeCCC
Confidence 577777643 3333 2468899999999999887554
No 428
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=22.50 E-value=1.9e+02 Score=26.29 Aligned_cols=78 Identities=15% Similarity=0.109 Sum_probs=51.9
Q ss_pred CCeEEEEeCCCccccCCCCCCCCCCCeEEEEecCCCCCCCCCCccccCCCChhHHHHHHHHHhhhhHHHHHHHhhcCCCE
Q 011765 34 GHKIFFISTPRNIDRLPRLPQNLASMIQFVKISLPHVDNLRENAEATIDLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDW 113 (478)
Q Consensus 34 Gh~Vt~~~~~~~~~~~~~~g~~~~~~i~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~ 113 (478)
..+..+++++.+..+....| ++...+- +...+.+ + .......+.+.+++.+..+
T Consensus 189 ~~~~~v~~H~af~Yfa~~yG------l~~~~~~-----~~~~~~e-----p----------s~~~l~~l~~~ik~~~v~~ 242 (312)
T 2o1e_A 189 EKKEFITQHTAFGYLAKEYG------LKQVPIA-----GLSPDQE-----P----------SAASLAKLKTYAKEHNVKV 242 (312)
T ss_dssp SCCEEEESSCTTHHHHHHTT------CEEEECS-----SCCSSSC-----C----------CHHHHHHHHHHTTSSCCCE
T ss_pred CCCEEEEECCchHHHHHHCC------CeEEEee-----ccCCCCC-----C----------CHHHHHHHHHHHHHcCCCE
Confidence 44556777888888888888 7766552 2211111 1 0122336677778889999
Q ss_pred EEEcCCccc--HHHHHHHhCCCeEEE
Q 011765 114 LLFDFAAYW--LPARARELGIPSGFF 137 (478)
Q Consensus 114 vI~D~~~~~--~~~~A~~lgIP~i~~ 137 (478)
|+++..... +-.+|+..|++++.+
T Consensus 243 If~e~~~~~~~~~~ia~e~g~~v~~l 268 (312)
T 2o1e_A 243 IYFEEIASSKVADTLASEIGAKTEVL 268 (312)
T ss_dssp EECSSCCCHHHHHHHHHHTCCEEECC
T ss_pred EEEeCCCChHHHHHHHHHhCCcEEEe
Confidence 999987764 457899999998765
No 429
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=22.48 E-value=1.6e+02 Score=24.12 Aligned_cols=38 Identities=18% Similarity=0.060 Sum_probs=29.0
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
++||+++.+++.. ..-+....+.|...|++|++++...
T Consensus 9 ~~~v~il~~~g~~-~~e~~~~~~~l~~ag~~v~~vs~~~ 46 (190)
T 2vrn_A 9 GKKIAILAADGVE-EIELTSPRAAIEAAGGTTELISLEP 46 (190)
T ss_dssp TCEEEEECCTTCB-HHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCEEEEEeCCCCC-HHHHHHHHHHHHHCCCEEEEEecCC
Confidence 4789998776554 3456667788889999999998764
No 430
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=22.46 E-value=61 Score=32.27 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=28.7
Q ss_pred HHHHHHHhhcCCCEEEEcCCcccHHHHHHHhCCCeEEE
Q 011765 100 EPMAKLLQSLAPDWLLFDFAAYWLPARARELGIPSGFF 137 (478)
Q Consensus 100 ~~l~~ll~~~~pD~vI~D~~~~~~~~~A~~lgIP~i~~ 137 (478)
..+.+++++.+||++|... ....+|+++|||++.+
T Consensus 446 ~el~~~i~~~~pDl~ig~~---~~~~~a~k~gIP~~~~ 480 (533)
T 1mio_A 446 HDMEVVLEKLKPDMFFAGI---KEKFVIQKGGVLSKQL 480 (533)
T ss_dssp HHHHHHHHHHCCSEEEECH---HHHHHHHHTTCEEEET
T ss_pred HHHHHHHHhcCCCEEEccc---chhHHHHhcCCCEEEe
Confidence 3577888889999999873 3578899999999865
No 431
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}
Probab=22.36 E-value=81 Score=28.73 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=23.9
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
+|+|++..- .|-+ -..|++.|.++||+|+.+...
T Consensus 21 ~~~vlVTGa--tG~i--G~~l~~~L~~~g~~V~~~~r~ 54 (333)
T 2q1w_A 21 MKKVFITGI--CGQI--GSHIAELLLERGDKVVGIDNF 54 (333)
T ss_dssp CCEEEEETT--TSHH--HHHHHHHHHHTTCEEEEEECC
T ss_pred CCEEEEeCC--ccHH--HHHHHHHHHHCCCEEEEEECC
Confidence 567776632 2322 357889999999999998754
No 432
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=22.35 E-value=1.4e+02 Score=24.42 Aligned_cols=40 Identities=5% Similarity=0.058 Sum_probs=31.3
Q ss_pred ccE-EEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 011765 6 KLQ-IAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRN 45 (478)
Q Consensus 6 ~~~-il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~ 45 (478)
+|+ |.++...+.|-..-+..|++.|..+|+.|.++.....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 455 4566666789999999999999999999998886653
No 433
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=22.32 E-value=85 Score=27.52 Aligned_cols=41 Identities=15% Similarity=-0.078 Sum_probs=31.5
Q ss_pred ccEEEE-e-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCcc
Q 011765 6 KLQIAM-F-PWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNI 46 (478)
Q Consensus 6 ~~~il~-~-~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (478)
+++++. + .-++.|=..-..+||..|+++|++|.++-.....
T Consensus 17 ~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~ 59 (262)
T 2ph1_A 17 IKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLG 59 (262)
T ss_dssp CSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 344544 3 4456799999999999999999999998766543
No 434
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}
Probab=22.28 E-value=4.2e+02 Score=23.64 Aligned_cols=106 Identities=8% Similarity=0.001 Sum_probs=56.6
Q ss_pred ceEEEEeCcccCCCHHHHHHHHHHHHhC-CCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCC
Q 011765 278 SVVYVAFGSEAKPSQEELTEIALGLELS-KLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDS 356 (478)
Q Consensus 278 ~~v~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~ 356 (478)
.+.+|.+|.++. .++.++.+. +.+++.+..... ...++.... +. .+-...++|..++
T Consensus 12 ~igiIG~G~~g~-------~~~~~l~~~~~~~~v~v~d~~~------------~~~~~~~~~-~~--~~~~~~~~l~~~~ 69 (315)
T 3c1a_A 12 RLALIGAGRWGK-------NYIRTIAGLPGAALVRLASSNP------------DNLALVPPG-CV--IESDWRSVVSAPE 69 (315)
T ss_dssp EEEEEECTTTTT-------THHHHHHHCTTEEEEEEEESCH------------HHHTTCCTT-CE--EESSTHHHHTCTT
T ss_pred eEEEECCcHHHH-------HHHHHHHhCCCcEEEEEEeCCH------------HHHHHHHhh-Cc--ccCCHHHHhhCCC
Confidence 488899998873 234455443 455555554321 111111111 21 2345567776545
Q ss_pred ceeeeeccCh----hhHHHHHHhCCcEecc-ccccc--h-hhHHHHHhhcCeEEEee
Q 011765 357 VGGFLTHAGW----SSVVEALQFGMPLIVL-TCYAD--Q-GLNAKLLEEKQIVELIP 405 (478)
Q Consensus 357 ~~~~ItHgG~----~s~~eal~~GvP~l~~-P~~~D--Q-~~na~~v~~~g~G~~l~ 405 (478)
+++++.--.. --+.+++.+|+++++= |+..+ + ......+++.|+-+...
T Consensus 70 ~D~V~i~tp~~~h~~~~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~~ 126 (315)
T 3c1a_A 70 VEAVIIATPPATHAEITLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGVMVWVE 126 (315)
T ss_dssp CCEEEEESCGGGHHHHHHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCEEEEeCChHHHHHHHHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCEEEEe
Confidence 5546643332 3466789999999875 76432 2 33444455667655553
No 435
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=22.27 E-value=1.3e+02 Score=28.91 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=35.0
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCCccc
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQK-GHKIFFISTPRNID 47 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~ 47 (478)
..|+++..++.|-..-...||..|+++ |++|.++..+.++.
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~ 142 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRP 142 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSST
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 355667777889999999999999999 99999999887654
No 436
>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*
Probab=22.27 E-value=79 Score=30.42 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=25.3
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
|||.++-.+..| ..+|..|++.||+|+++...
T Consensus 1 mkI~VIG~G~vG-----~~~A~~la~~G~~V~~~d~~ 32 (436)
T 1mv8_A 1 MRISIFGLGYVG-----AVCAGCLSARGHEVIGVDVS 32 (436)
T ss_dssp CEEEEECCSTTH-----HHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEECCCHHH-----HHHHHHHHHCCCEEEEEECC
Confidence 688888766555 46888999999999988653
No 437
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=22.22 E-value=63 Score=31.37 Aligned_cols=32 Identities=31% Similarity=0.269 Sum_probs=26.2
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
|||.++-.+..| +.+|..|+++||+|+++...
T Consensus 3 mkI~VIG~G~vG-----~~lA~~La~~G~~V~~~D~~ 34 (450)
T 3gg2_A 3 LDIAVVGIGYVG-----LVSATCFAELGANVRCIDTD 34 (450)
T ss_dssp CEEEEECCSHHH-----HHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEECcCHHH-----HHHHHHHHhcCCEEEEEECC
Confidence 899998665544 57899999999999988754
No 438
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=22.22 E-value=1.5e+02 Score=24.96 Aligned_cols=38 Identities=5% Similarity=0.005 Sum_probs=29.0
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
++||+++-+++.- ..-+....+.|...|++|++++...
T Consensus 9 ~~~v~ill~~g~~-~~e~~~~~~~l~~ag~~v~~vs~~g 46 (208)
T 3ot1_A 9 SKRILVPVAHGSE-EMETVIIVDTLVRAGFQVTMAAVGD 46 (208)
T ss_dssp CCEEEEEECTTCC-HHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCeEEEEECCCCc-HHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 4589888777654 4455666788889999999999853
No 439
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=22.12 E-value=1.2e+02 Score=22.46 Aligned_cols=38 Identities=8% Similarity=-0.057 Sum_probs=23.7
Q ss_pred HHHHHhhcCCCEEEEcCCcc--cHHHHHHHh-------CCCeEEEec
Q 011765 102 MAKLLQSLAPDWLLFDFAAY--WLPARAREL-------GIPSGFFSI 139 (478)
Q Consensus 102 l~~ll~~~~pD~vI~D~~~~--~~~~~A~~l-------gIP~i~~~~ 139 (478)
..+.++..+||+||.|...+ .+..+.+.+ ++|++.+..
T Consensus 43 a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~ 89 (129)
T 1p6q_A 43 GMKIMAQNPHHLVISDFNMPKMDGLGLLQAVRANPATKKAAFIILTA 89 (129)
T ss_dssp HHHHHHTSCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCEEEECCS
T ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHhcCccccCCCEEEEeC
Confidence 34455667899999997654 355444443 456666544
No 440
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*
Probab=22.10 E-value=68 Score=27.82 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCC
Q 011765 22 PWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 22 p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
--.++|++|.++|++|+++..+.
T Consensus 36 iG~aiA~~~~~~Ga~V~l~~~~~ 58 (226)
T 1u7z_A 36 MGFAIAAAAARRGANVTLVSGPV 58 (226)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSC
T ss_pred HHHHHHHHHHHCCCEEEEEECCc
Confidence 34688999999999999987654
No 441
>4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A
Probab=22.07 E-value=74 Score=27.76 Aligned_cols=39 Identities=18% Similarity=0.178 Sum_probs=25.1
Q ss_pred ccEEEEecCCCccCH--HHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 6 KLQIAMFPWLAFGHM--IPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 6 ~~~il~~~~~~~gH~--~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
+.-++++.+++.+|- ..+..+|+.|+++|+.|..+-..-
T Consensus 55 ~~p~Vl~~HG~g~~~~~~~~~~~a~~la~~Gy~Vl~~D~rG 95 (259)
T 4ao6_A 55 SDRLVLLGHGGTTHKKVEYIEQVAKLLVGRGISAMAIDGPG 95 (259)
T ss_dssp CSEEEEEEC--------CHHHHHHHHHHHTTEEEEEECCCC
T ss_pred CCCEEEEeCCCcccccchHHHHHHHHHHHCCCeEEeeccCC
Confidence 445777777777763 357889999999999988775443
No 442
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=22.05 E-value=85 Score=27.92 Aligned_cols=33 Identities=15% Similarity=0.037 Sum_probs=22.2
Q ss_pred HHhhcCCCEEEEcCCcc--cHHHHHHHhCCCeEEE
Q 011765 105 LLQSLAPDWLLFDFAAY--WLPARARELGIPSGFF 137 (478)
Q Consensus 105 ll~~~~pD~vI~D~~~~--~~~~~A~~lgIP~i~~ 137 (478)
.+.+.+||+||...... .....-+..|||++.+
T Consensus 54 ~i~~l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~ 88 (283)
T 2r79_A 54 GVLALRPDILIGTEEMGPPPVLKQLEGAGVRVETL 88 (283)
T ss_dssp HHHTTCCSEEEECTTCCCHHHHHHHHHTTCCEEEC
T ss_pred HHHhcCCCEEEEeCccCcHHHHHHHHHcCCcEEEe
Confidence 34577999999875332 2233446689999876
No 443
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=22.04 E-value=77 Score=27.81 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=30.9
Q ss_pred ccEEEEe--cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 011765 6 KLQIAMF--PWLAFGHMIPWLELAKLIAQKGHKIFFISTPRN 45 (478)
Q Consensus 6 ~~~il~~--~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~ 45 (478)
+++++.+ +-++.|=..-..+||..|+ +|++|.++-.+..
T Consensus 26 ~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~ 66 (267)
T 3k9g_A 26 KPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQ 66 (267)
T ss_dssp CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTT
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence 5666554 4456799999999999999 9999999876543
No 444
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=22.04 E-value=86 Score=25.96 Aligned_cols=37 Identities=5% Similarity=-0.024 Sum_probs=24.2
Q ss_pred ccEEEEecCCCc---cCHHHHHH-HHHHHHhCC--CeEEEEeC
Q 011765 6 KLQIAMFPWLAF---GHMIPWLE-LAKLIAQKG--HKIFFIST 42 (478)
Q Consensus 6 ~~~il~~~~~~~---gH~~p~l~-La~~L~~rG--h~Vt~~~~ 42 (478)
+||||++..... |+..-+.. +++.|.++| ++|.++--
T Consensus 1 Mmkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl 43 (201)
T 1t5b_A 1 MSKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDL 43 (201)
T ss_dssp CCEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEET
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 478888755544 66666554 566777766 88887653
No 445
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=21.93 E-value=1.9e+02 Score=23.09 Aligned_cols=39 Identities=15% Similarity=0.342 Sum_probs=29.4
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
++|||+++.+++... .=+....+.|...|++|.+++...
T Consensus 1 ~~~ki~il~~~g~~~-~e~~~~~~~l~~ag~~v~~vs~~~ 39 (168)
T 3l18_A 1 ASMKVLFLSADGFED-LELIYPLHRIKEEGHEVYVASFQR 39 (168)
T ss_dssp CCCEEEEECCTTBCH-HHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCcEEEEEeCCCccH-HHHHHHHHHHHHCCCEEEEEECCC
Confidence 368999988876533 335566788888999999998754
No 446
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=21.86 E-value=87 Score=27.93 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=25.1
Q ss_pred ccEEEEecC-CCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011765 6 KLQIAMFPW-LAFGHMIPWLELAKLIAQKGHKIFFIST 42 (478)
Q Consensus 6 ~~~il~~~~-~~~gH~~p~l~La~~L~~rGh~Vt~~~~ 42 (478)
+|||.|+-. +..| ..+|+.|.++||+|+++..
T Consensus 11 mm~I~iIG~tG~mG-----~~la~~l~~~g~~V~~~~r 43 (286)
T 3c24_A 11 PKTVAILGAGGKMG-----ARITRKIHDSAHHLAAIEI 43 (286)
T ss_dssp CCEEEEETTTSHHH-----HHHHHHHHHSSSEEEEECC
T ss_pred CCEEEEECCCCHHH-----HHHHHHHHhCCCEEEEEEC
Confidence 469999877 6555 4678999999999997654
No 447
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=21.70 E-value=57 Score=31.27 Aligned_cols=37 Identities=14% Similarity=0.313 Sum_probs=28.1
Q ss_pred CCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 011765 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRN 45 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~ 45 (478)
+.++||+++.++-.| ..+|+.|.++||+|+++.....
T Consensus 2 ~~~~~viIiG~Gr~G-----~~va~~L~~~g~~vvvId~d~~ 38 (413)
T 3l9w_A 2 SHGMRVIIAGFGRFG-----QITGRLLLSSGVKMVVLDHDPD 38 (413)
T ss_dssp --CCSEEEECCSHHH-----HHHHHHHHHTTCCEEEEECCHH
T ss_pred CCCCeEEEECCCHHH-----HHHHHHHHHCCCCEEEEECCHH
Confidence 346899999775444 5789999999999999886643
No 448
>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6
Probab=21.70 E-value=97 Score=27.71 Aligned_cols=31 Identities=10% Similarity=0.261 Sum_probs=24.6
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFIST 42 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~ 42 (478)
|||.|+-.+..|. .+|+.|.+.||+|+++..
T Consensus 6 m~i~iiG~G~~G~-----~~a~~l~~~g~~V~~~~~ 36 (299)
T 1vpd_A 6 MKVGFIGLGIMGK-----PMSKNLLKAGYSLVVSDR 36 (299)
T ss_dssp CEEEEECCSTTHH-----HHHHHHHHTTCEEEEECS
T ss_pred ceEEEECchHHHH-----HHHHHHHhCCCEEEEEeC
Confidence 6999998776664 468889999999987654
No 449
>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A
Probab=21.65 E-value=60 Score=31.85 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=27.5
Q ss_pred CCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 4 NSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
+++|+|.|+-.+..| .++|..|+++||+|+++...
T Consensus 2 ~~~~kIgiIGlG~MG-----~~lA~~L~~~G~~V~v~dr~ 36 (484)
T 4gwg_A 2 NAQADIALIGLAVMG-----QNLILNMNDHGFVVCAFNRT 36 (484)
T ss_dssp -CCBSEEEECCSHHH-----HHHHHHHHHTTCCEEEECSS
T ss_pred CCCCEEEEEChhHHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 357899999877665 56899999999999987543
No 450
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=21.62 E-value=2e+02 Score=26.30 Aligned_cols=82 Identities=11% Similarity=-0.066 Sum_probs=0.0
Q ss_pred CceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCCChhhhhhcCCCcEEEeccCChhhhhcCCC
Q 011765 277 GSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIELPDGFEERTRGRGVVYTSWAPQLAILAHDS 356 (478)
Q Consensus 277 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~~~~~vpq~~vL~~~~ 356 (478)
+++.+|.--..... +.+..+.+.|++.+..+.+.. ....-.. .-+-...+...++
T Consensus 30 ~~~~vi~Np~sg~~--~~~~~i~~~l~~~g~~~~~~~---------t~~~~~~--------------~~~~~~~~~~~~d 84 (332)
T 2bon_A 30 PASLLILNGKSTDN--LPLREAIMLLREEGMTIHVRV---------TWEKGDA--------------ARYVEEARKFGVA 84 (332)
T ss_dssp CCEEEEECSSSTTC--HHHHHHHHHHHTTTCCEEEEE---------CCSTTHH--------------HHHHHHHHHHTCS
T ss_pred ceEEEEECCCCCCC--chHHHHHHHHHHcCCcEEEEE---------ecCcchH--------------HHHHHHHHhcCCC
Q ss_pred ceeeeeccChhhHHHHH--------HhCCcEeccccc
Q 011765 357 VGGFLTHAGWSSVVEAL--------QFGMPLIVLTCY 385 (478)
Q Consensus 357 ~~~~ItHgG~~s~~eal--------~~GvP~l~~P~~ 385 (478)
+ +|.-||=||+.|++ ..++|+.++|..
T Consensus 85 ~--vvv~GGDGTl~~v~~~l~~~~~~~~~plgiiP~G 119 (332)
T 2bon_A 85 T--VIAGGGDGTINEVSTALIQCEGDDIPALGILPLG 119 (332)
T ss_dssp E--EEEEESHHHHHHHHHHHHHCCSSCCCEEEEEECS
T ss_pred E--EEEEccchHHHHHHHHHhhcccCCCCeEEEecCc
No 451
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=21.60 E-value=60 Score=26.13 Aligned_cols=37 Identities=11% Similarity=0.027 Sum_probs=28.7
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCcc
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPRNI 46 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (478)
.+++++.-+. =+.|++++++.|.++|.+|+++ .....
T Consensus 24 ~~~llIaGG~--GItPl~sm~~~l~~~~~~v~l~-g~r~~ 60 (158)
T 3lrx_A 24 GKILAIGAYT--GIVEVYPIAKAWQEIGNDVTTL-HVTFE 60 (158)
T ss_dssp SEEEEEEETT--HHHHHHHHHHHHHHHTCEEEEE-EECBG
T ss_pred CeEEEEEccC--cHHHHHHHHHHHHhcCCcEEEE-EeCCH
Confidence 4677665554 3899999999999999999998 55443
No 452
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=21.46 E-value=1e+02 Score=26.86 Aligned_cols=36 Identities=19% Similarity=0.148 Sum_probs=29.3
Q ss_pred EEEe-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 9 IAMF-PWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 9 il~~-~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
|.++ +-++.|-..-..+||..|+++|++|.++-.+.
T Consensus 5 I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (263)
T 1hyq_A 5 ITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI 41 (263)
T ss_dssp EEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 3443 45577999999999999999999999987654
No 453
>1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A*
Probab=21.37 E-value=1.2e+02 Score=25.25 Aligned_cols=37 Identities=11% Similarity=0.012 Sum_probs=28.5
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
..++++.++..|...-+..+++.|.++|+.|..+...
T Consensus 28 ~p~vv~~hG~~~~~~~~~~~~~~l~~~g~~v~~~d~~ 64 (236)
T 1zi8_A 28 APVIVIAQDIFGVNAFMRETVSWLVDQGYAAVCPDLY 64 (236)
T ss_dssp EEEEEEECCTTBSCHHHHHHHHHHHHTTCEEEEECGG
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHhCCcEEEecccc
Confidence 4456666666777778899999999999998876543
No 454
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=21.27 E-value=1.1e+02 Score=27.68 Aligned_cols=45 Identities=9% Similarity=0.091 Sum_probs=29.8
Q ss_pred CCCCCccEEEEecCCC--ccCH-HHHHHHHHHHHhCCCeEEEEeCCCc
Q 011765 1 MADNSKLQIAMFPWLA--FGHM-IPWLELAKLIAQKGHKIFFISTPRN 45 (478)
Q Consensus 1 ~~~~~~~~il~~~~~~--~gH~-~p~l~La~~L~~rGh~Vt~~~~~~~ 45 (478)
|...+++|++++..|. .|.. .-...+.+.|.++|+++.+..+...
T Consensus 3 m~~~~m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~ 50 (304)
T 3s40_A 3 MTKTKFEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQ 50 (304)
T ss_dssp --CCSCSSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECCST
T ss_pred CccCCCCEEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEccCc
Confidence 5555577888776664 4443 3345778888999999998866543
No 455
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=21.24 E-value=1.3e+02 Score=17.33 Aligned_cols=29 Identities=3% Similarity=-0.015 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHhc
Q 011765 416 NSVAESLRLVLVEEKGQIYRDKAKEMKGLFG 446 (478)
Q Consensus 416 ~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~ 446 (478)
.+|.+.|.+++.. +......+.+++..+.
T Consensus 4 nQLE~kVEeLl~~--~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 4 KQLEAEVEEIESE--VWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh--hHHHHHHHHHHHHHhc
Confidence 4688899999974 6778888888888764
No 456
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=21.17 E-value=1.4e+02 Score=21.54 Aligned_cols=33 Identities=3% Similarity=-0.059 Sum_probs=24.2
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFIST 42 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~ 42 (478)
..+|+++|..+ ......+..|.+.|++|.++..
T Consensus 56 ~~~iv~yC~~g----~rs~~a~~~L~~~G~~v~~l~G 88 (103)
T 3eme_A 56 NEIYYIVCAGG----VRSAKVVEYLEANGIDAVNVEG 88 (103)
T ss_dssp TSEEEEECSSS----SHHHHHHHHHHTTTCEEEEETT
T ss_pred CCeEEEECCCC----hHHHHHHHHHHHCCCCeEEeCC
Confidence 34788888554 3567789999999998876643
No 457
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=21.15 E-value=1.9e+02 Score=23.70 Aligned_cols=36 Identities=22% Similarity=0.183 Sum_probs=23.2
Q ss_pred EEE-EecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 8 QIA-MFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 8 ~il-~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
|++ ++...+.=.. =+..-.+.|.+.|++|++++...
T Consensus 9 ~~v~il~~~gFe~~-E~~~p~~~l~~ag~~V~~~s~~~ 45 (177)
T 4hcj_A 9 NILYVMSGQNFQDE-EYFESKKIFESAGYKTKVSSTFI 45 (177)
T ss_dssp EEEEECCSEEECHH-HHHHHHHHHHHTTCEEEEEESSS
T ss_pred CEEEEECCCCccHH-HHHHHHHHHHHCCCEEEEEECCC
Confidence 444 4443333222 25566788889999999998754
No 458
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2
Probab=21.14 E-value=85 Score=28.58 Aligned_cols=32 Identities=13% Similarity=0.245 Sum_probs=22.4
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFIST 42 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~ 42 (478)
|+||+.. +.|-+ -..|++.|.++||+|+.+..
T Consensus 2 ~~vlVTG--atG~i--G~~l~~~L~~~g~~V~~~~r 33 (347)
T 1orr_A 2 AKLLITG--GCGFL--GSNLASFALSQGIDLIVFDN 33 (347)
T ss_dssp CEEEEET--TTSHH--HHHHHHHHHHTTCEEEEEEC
T ss_pred cEEEEeC--CCchh--HHHHHHHHHhCCCEEEEEeC
Confidence 5666653 33332 25789999999999998864
No 459
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=21.12 E-value=87 Score=31.02 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=26.3
Q ss_pred HHHHHHhhcCCCEEEEcCCcccHHHHHHHh-------CCCeEEE
Q 011765 101 PMAKLLQSLAPDWLLFDFAAYWLPARAREL-------GIPSGFF 137 (478)
Q Consensus 101 ~l~~ll~~~~pD~vI~D~~~~~~~~~A~~l-------gIP~i~~ 137 (478)
.+.+++++.+||++|.+. .+..+|+++ |||++.+
T Consensus 425 ~l~~~i~~~~pDLiig~~---~~~~~a~~~~~~g~~~gip~v~i 465 (519)
T 1qgu_B 425 HFRSLMFTRQPDFMIGNS---YGKFIQRDTLAKGKAFEVPLIRL 465 (519)
T ss_dssp HHHHHHHHHCCSEEEECG---GGHHHHHHHHHHCGGGCCCEEEC
T ss_pred HHHHHHhhcCCCEEEECc---chHHHHHHhhcccccCCCCeEEe
Confidence 355666677999999985 357778888 9999865
No 460
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=21.06 E-value=94 Score=25.88 Aligned_cols=36 Identities=11% Similarity=-0.039 Sum_probs=24.6
Q ss_pred ccEEEEecCCC--ccCHHHHHH-HHHH-HHhCCCeEEEEe
Q 011765 6 KLQIAMFPWLA--FGHMIPWLE-LAKL-IAQKGHKIFFIS 41 (478)
Q Consensus 6 ~~~il~~~~~~--~gH~~p~l~-La~~-L~~rGh~Vt~~~ 41 (478)
+|||+++.... .|+..-+.. +++. |.++|++|.++-
T Consensus 2 Mmkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~d 41 (197)
T 2vzf_A 2 TYSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIH 41 (197)
T ss_dssp CEEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEE
T ss_pred CceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 47898876654 476666555 4566 777798887754
No 461
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.04 E-value=75 Score=26.96 Aligned_cols=34 Identities=29% Similarity=0.216 Sum_probs=24.9
Q ss_pred cCCCEEE-EcCCcc-cHHHHHHHhCCCeEEEecchH
Q 011765 109 LAPDWLL-FDFAAY-WLPARARELGIPSGFFSIFTA 142 (478)
Q Consensus 109 ~~pD~vI-~D~~~~-~~~~~A~~lgIP~i~~~~~~~ 142 (478)
..||++| .|+..- -++.=|.++|||+|.+..+.+
T Consensus 110 ~~Pdllvv~Dp~~d~~ai~EA~~l~IP~Ial~DTn~ 145 (202)
T 3j20_B 110 FEPDVLIVTDPRADHQAMREAVEIGIPIVALVDTEN 145 (202)
T ss_dssp CCCSEEEESCTTTSHHHHHHHHHHTCCEEEEECTTC
T ss_pred cCCCeEEEeCCccchHHHHHHHHcCCCEEEEEcCCC
Confidence 3899986 555332 466779999999999977554
No 462
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=21.02 E-value=1.8e+02 Score=21.93 Aligned_cols=37 Identities=11% Similarity=-0.060 Sum_probs=22.4
Q ss_pred HHHHhhcCCCEEEEcCCcc--cHHHHHHHh----------CCCeEEEec
Q 011765 103 AKLLQSLAPDWLLFDFAAY--WLPARAREL----------GIPSGFFSI 139 (478)
Q Consensus 103 ~~ll~~~~pD~vI~D~~~~--~~~~~A~~l----------gIP~i~~~~ 139 (478)
.+.+...+||+||.|...+ .+..+++.+ .+|++.+..
T Consensus 47 l~~l~~~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~ii~~s~ 95 (140)
T 3c97_A 47 LQAYQNRQFDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKRASIIAITA 95 (140)
T ss_dssp HHHHHHSCCSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCCCCCEEEES
T ss_pred HHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCceEEEEEeC
Confidence 3445567899999997554 344444332 456666543
No 463
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=21.01 E-value=2.8e+02 Score=27.79 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=23.0
Q ss_pred ceeeeeccC------hhhHHHHHHhCCcEeccc
Q 011765 357 VGGFLTHAG------WSSVVEALQFGMPLIVLT 383 (478)
Q Consensus 357 ~~~~ItHgG------~~s~~eal~~GvP~l~~P 383 (478)
..++++|.| .+.+.+|.+.++|+|++-
T Consensus 69 ~~v~~~tsGpG~~N~~~gl~~A~~~~vPll~It 101 (590)
T 1v5e_A 69 LGVTVGSGGPGASHLINGLYDAAMDNIPVVAIL 101 (590)
T ss_dssp CCEEEECTTHHHHTTHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEeCcChHHHHHHHHHHHHHhcCCCEEEEc
Confidence 344899988 568999999999999985
No 464
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=21.00 E-value=3.5e+02 Score=22.24 Aligned_cols=136 Identities=10% Similarity=0.020 Sum_probs=70.2
Q ss_pred ceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCCCC-ChhhhhhcCCCcEEEecc----CChhhhh
Q 011765 278 SVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWVLKKRLGQADTEPIEL-PDGFEERTRGRGVVYTSW----APQLAIL 352 (478)
Q Consensus 278 ~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~-p~~~~~~~~~~n~~~~~~----vpq~~vL 352 (478)
.+++.-.|++... ....+++.|.+.+..+-.++..... .-+ |..+. .. ..+ ...-| +.+.++.
T Consensus 4 ~IllgvTGs~aa~---k~~~l~~~L~~~g~~V~vv~T~~A~------~fi~~~~l~-~l-~~~-~~d~~~~~~~~hi~l~ 71 (181)
T 1g63_A 4 KLLICATASINVI---NINHYIVELKQHFDEVNILFSPSSK------NFINTDVLK-LF-CDN-LYDEIKDPLLNHINIV 71 (181)
T ss_dssp CEEEEECSCGGGG---GHHHHHHHHTTTSSCEEEEECGGGG------GTSCGGGGG-GT-SSC-EECTTTCTTCCHHHHH
T ss_pred EEEEEEECHHHHH---HHHHHHHHHHHCCCEEEEEEchhHH------HHHHHHHHH-HH-hCC-cccccCCCCCcccccc
Confidence 3666666766643 3455666777777777666654311 111 11111 11 122 22222 2344444
Q ss_pred cCCCceeeeeccChhhHHH-------------HHHhCCcEecccccc----ch---hhHHHHHhhcCeEEEeeccC----
Q 011765 353 AHDSVGGFLTHAGWSSVVE-------------ALQFGMPLIVLTCYA----DQ---GLNAKLLEEKQIVELIPRDE---- 408 (478)
Q Consensus 353 ~~~~~~~~ItHgG~~s~~e-------------al~~GvP~l~~P~~~----DQ---~~na~~v~~~g~G~~l~~~~---- 408 (478)
..+++ .+|.=|-.||+.. ++..++|+++.|-.. .. ..|-.++.+.|+-+.-+...
T Consensus 72 ~~aD~-~vIaPaTantlAKiA~GiaDnllt~~~la~~~pvvlaPamn~~m~~~p~~~~Nl~~L~~~G~~iv~p~~g~~f~ 150 (181)
T 1g63_A 72 ENHEY-ILVLPASANTINKIANGICDNLLTTVCLTGYQKLFIFPNMNIRMWGNPFLQKNIDLLKNNDVKVYSPDMNKSFE 150 (181)
T ss_dssp HTCSE-EEEEEECHHHHHHHHTTCCCSHHHHHHHHTGGGEEEEECCCHHHHTCHHHHHHHHHHHTTTCEECCCEECC---
T ss_pred ccCCE-EEEecCCHHHHHHHHccccCcHHHHHHHHcCCCEEEEeCCChhhcCCHHHHHHHHHHHHCCCEEECCCCCcccc
Confidence 44554 3666666665533 377899999999543 21 45677777777643322211
Q ss_pred -------C-CCcccHHHHHHHHHHHh
Q 011765 409 -------G-DGFFTRNSVAESLRLVL 426 (478)
Q Consensus 409 -------~-~~~~~~~~l~~~i~~ll 426 (478)
+ ....+.++|.+.+.+.|
T Consensus 151 lacg~~~g~g~~~~~~~iv~~v~~~l 176 (181)
T 1g63_A 151 ISSGRYKNNITMPNIENVLNFVLNNE 176 (181)
T ss_dssp -------CCEECCCHHHHHHHHHC--
T ss_pred cccCCccCCcCCCCHHHHHHHHHHHh
Confidence 0 01246677777666554
No 465
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Probab=20.97 E-value=1.2e+02 Score=28.29 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=24.6
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
+|+|++.. +.|.+ -..|++.|.++||+|+.+....
T Consensus 29 ~~~vlVtG--atG~i--G~~l~~~L~~~g~~V~~~~r~~ 63 (379)
T 2c5a_A 29 NLKISITG--AGGFI--ASHIARRLKHEGHYVIASDWKK 63 (379)
T ss_dssp CCEEEEET--TTSHH--HHHHHHHHHHTTCEEEEEESSC
T ss_pred CCeEEEEC--CccHH--HHHHHHHHHHCCCeEEEEECCC
Confidence 56777663 33333 3568899999999999887543
No 466
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=20.87 E-value=1.2e+02 Score=22.93 Aligned_cols=39 Identities=18% Similarity=0.123 Sum_probs=24.0
Q ss_pred CCCCCccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 1 MADNSKLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 1 ~~~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
|.-.++++|+++- .|-.-...|.+.|.+.|++|+.+.+.
T Consensus 1 M~~~~~~~ilivd----d~~~~~~~l~~~L~~~g~~v~~~~~~ 39 (136)
T 3kto_A 1 MSLNHHPIIYLVD----HQKDARAALSKLLSPLDVTIQCFASA 39 (136)
T ss_dssp ------CEEEEEC----SCHHHHHHHHHHHTTSSSEEEEESSH
T ss_pred CCCCCCCeEEEEc----CCHHHHHHHHHHHHHCCcEEEEeCCH
Confidence 5545578998884 45556667778888889998865543
No 467
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=20.84 E-value=3.4e+02 Score=23.90 Aligned_cols=52 Identities=15% Similarity=0.036 Sum_probs=32.8
Q ss_pred hCCcEeccccccchh-----hHHHHHhhcCe-EEEeeccC------CCC--cccHHHHHHHHHHHh
Q 011765 375 FGMPLIVLTCYADQG-----LNAKLLEEKQI-VELIPRDE------GDG--FFTRNSVAESLRLVL 426 (478)
Q Consensus 375 ~GvP~l~~P~~~DQ~-----~na~~v~~~g~-G~~l~~~~------~~~--~~~~~~l~~~i~~ll 426 (478)
+|+|+++.|-+..-. ..++....+|+ |+.+...- .|+ .++++++.+.++++-
T Consensus 191 ~~~pVi~d~sH~~g~~~~v~~~~~aAva~Ga~Gl~iE~H~~~d~al~D~~~sl~p~~~~~l~~~i~ 256 (262)
T 1zco_A 191 SHLPIIVDPSHPAGRRSLVIPLAKAAYAIGADGIMVEVHPEPEKALSDSQQQLTFDDFLQLLKELE 256 (262)
T ss_dssp BSSCEEECSSTTTCSGGGHHHHHHHHHHTTCSEEEEEBCSSGGGCSSCTTTCBCHHHHHHHHHHHH
T ss_pred hCCCEEEEcCCCCCccchHHHHHHHHHHcCCCEEEEEecCCccccCChhhcCCCHHHHHHHHHHHH
Confidence 489998888764332 44555666766 77776651 022 267777777776654
No 468
>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6
Probab=20.82 E-value=54 Score=28.83 Aligned_cols=29 Identities=14% Similarity=0.293 Sum_probs=22.9
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFI 40 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~ 40 (478)
|||.|+-.+..|. .+|+.|.+.||+|++.
T Consensus 1 M~I~iIG~G~mG~-----~la~~l~~~g~~V~~~ 29 (264)
T 1i36_A 1 LRVGFIGFGEVAQ-----TLASRLRSRGVEVVTS 29 (264)
T ss_dssp CEEEEESCSHHHH-----HHHHHHHHTTCEEEEC
T ss_pred CeEEEEechHHHH-----HHHHHHHHCCCeEEEe
Confidence 6888886665553 5799999999999884
No 469
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=20.69 E-value=75 Score=27.14 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=23.4
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
||.++++..+.| =-.++|+.|.++|++|+++...
T Consensus 1 Mk~vlVTGas~g---IG~~~a~~l~~~G~~V~~~~r~ 34 (230)
T 3guy_A 1 MSLIVITGASSG---LGAELAKLYDAEGKATYLTGRS 34 (230)
T ss_dssp --CEEEESTTSH---HHHHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEEecCCch---HHHHHHHHHHHCCCEEEEEeCC
Confidence 566666665532 2368899999999999987654
No 470
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}
Probab=20.65 E-value=1.1e+02 Score=29.84 Aligned_cols=36 Identities=17% Similarity=0.138 Sum_probs=29.7
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHHhC-CC-eEEEEeCCCc
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIAQK-GH-KIFFISTPRN 45 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~~r-Gh-~Vt~~~~~~~ 45 (478)
+.|||.++-.+..| +.+|..|++. || +|+++.....
T Consensus 17 ~~mkIaVIGlG~mG-----~~lA~~la~~~G~~~V~~~D~~~~ 54 (478)
T 3g79_A 17 PIKKIGVLGMGYVG-----IPAAVLFADAPCFEKVLGFQRNSK 54 (478)
T ss_dssp SCCEEEEECCSTTH-----HHHHHHHHHSTTCCEEEEECCCCT
T ss_pred CCCEEEEECcCHHH-----HHHHHHHHHhCCCCeEEEEECChh
Confidence 36899999888777 5789999999 99 9999876543
No 471
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=20.55 E-value=89 Score=26.81 Aligned_cols=108 Identities=7% Similarity=-0.023 Sum_probs=61.3
Q ss_pred ccEEEEecCCCccCHHH----HHHHHHHHHhC-CCeEEEEeCCCc-cccC---CCCCCCCCCCeEEEEecCCCCCCCCCC
Q 011765 6 KLQIAMFPWLAFGHMIP----WLELAKLIAQK-GHKIFFISTPRN-IDRL---PRLPQNLASMIQFVKISLPHVDNLREN 76 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p----~l~La~~L~~r-Gh~Vt~~~~~~~-~~~~---~~~g~~~~~~i~~~~i~~~~~~~l~~~ 76 (478)
+..|+++.-...|.++| ++.-|++|++. |-+|+.++-... .+.. ...| .. +.+.+. +. .
T Consensus 3 m~~ilV~~E~~~g~l~~~s~ell~~A~~La~~~g~~v~av~~G~~~~~~~~~~~~~G---ad--~v~~v~----~~---~ 70 (217)
T 3ih5_A 3 ANNLFVYCEIEEGIVADVSLELLTKGRSLANELNCQLEAVVAGTGLKEIEKQILPYG---VD--KLHVFD----AE---G 70 (217)
T ss_dssp CCCEEEECCEETTEECHHHHHHHHHHHHHHHHHTCCEEEEEEESCCTTTHHHHGGGT---CS--EEEEEE----CG---G
T ss_pred cccEEEEEECcCCEECHHHHHHHHHHHHHHHhcCCeEEEEEECCCHHHHHHHHHhcC---CC--EEEEec----Cc---c
Confidence 44688877766676655 57778888774 767776554432 1111 1223 01 122221 10 0
Q ss_pred ccccCCCChhHHHHHHHHHhhhhHHHHHHHhhcCCCEEEEcCCcc---cHHHHHHHhCCCeEEEe
Q 011765 77 AEATIDLPYDEVKYLKQSFDCLEEPMAKLLQSLAPDWLLFDFAAY---WLPARARELGIPSGFFS 138 (478)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pD~vI~D~~~~---~~~~~A~~lgIP~i~~~ 138 (478)
.. .. ........+.+++++.+||+|+.-.... .+..+|.+|++|.+.-.
T Consensus 71 ~~---~~----------~~~~~a~~l~~~i~~~~p~~Vl~g~t~~G~~laprlAa~L~~~~~sdv 122 (217)
T 3ih5_A 71 LY---PY----------TSLPHTSILVNLFKEEQPQICLMGATVIGRDLGPRVSSALTSGLTADC 122 (217)
T ss_dssp GS---SC----------CHHHHHHHHHHHHHHHCCSEEEEECSHHHHHHHHHHHHHTTCCCBCSC
T ss_pred cc---cC----------CHHHHHHHHHHHHHhcCCCEEEEeCCcchhhHHHHHHHHhCCCccceE
Confidence 00 00 0123445666777778999999886544 24578999999998653
No 472
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=20.54 E-value=2.9e+02 Score=22.27 Aligned_cols=53 Identities=15% Similarity=0.092 Sum_probs=35.9
Q ss_pred HHHHHH---hCCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhc
Q 011765 369 VVEALQ---FGMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLV 427 (478)
Q Consensus 369 ~~eal~---~GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~ 427 (478)
+.+.+. ..+|+|++--..| ...+..+.+.|+--.+.+- ++.++|..+|+.++.
T Consensus 69 l~~~~~~~~~~~~ii~lt~~~~-~~~~~~a~~~ga~~~l~KP-----~~~~~L~~~l~~~~~ 124 (196)
T 1qo0_D 69 IAALLAAGTPRTTLVALVEYES-PAVLSQIIELECHGVITQP-----LDAHRVLPVLVSARR 124 (196)
T ss_dssp HHHHHHHSCTTCEEEEEECCCS-HHHHHHHHHHTCSEEEESS-----CCGGGHHHHHHHHHH
T ss_pred HHHHHhccCCCCCEEEEEcCCC-hHHHHHHHHcCCCeeEecC-----cCHHHHHHHHHHHHH
Confidence 444454 4578887765544 3456666677876566553 688999999988887
No 473
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A
Probab=20.51 E-value=4e+02 Score=24.16 Aligned_cols=28 Identities=21% Similarity=0.144 Sum_probs=21.0
Q ss_pred CceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEE
Q 011765 277 GSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFW 311 (478)
Q Consensus 277 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~ 311 (478)
+.+-+|.+|.++ ..+++.+...|.+++.
T Consensus 140 ~tvGIiG~G~IG-------~~vA~~l~~~G~~V~~ 167 (315)
T 3pp8_A 140 FSVGIMGAGVLG-------AKVAESLQAWGFPLRC 167 (315)
T ss_dssp CCEEEECCSHHH-------HHHHHHHHTTTCCEEE
T ss_pred CEEEEEeeCHHH-------HHHHHHHHHCCCEEEE
Confidence 459999999988 4566677778888653
No 474
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*
Probab=20.50 E-value=88 Score=28.02 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=22.9
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
||||+.-- .|.+ -..|++.|.++||+|+.+...
T Consensus 1 m~vlVtGa--tG~i--G~~l~~~L~~~g~~V~~~~r~ 33 (312)
T 3ko8_A 1 MRIVVTGG--AGFI--GSHLVDKLVELGYEVVVVDNL 33 (312)
T ss_dssp CEEEEETT--TSHH--HHHHHHHHHHTTCEEEEECCC
T ss_pred CEEEEECC--CChH--HHHHHHHHHhCCCEEEEEeCC
Confidence 56666533 3333 246899999999999988643
No 475
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=20.49 E-value=92 Score=23.27 Aligned_cols=45 Identities=13% Similarity=0.195 Sum_probs=30.9
Q ss_pred CCcEeccccccchhhHHHHHhhcCeEEEeeccCCCCcccHHHHHHHHHHHhc
Q 011765 376 GMPLIVLTCYADQGLNAKLLEEKQIVELIPRDEGDGFFTRNSVAESLRLVLV 427 (478)
Q Consensus 376 GvP~l~~P~~~DQ~~na~~v~~~g~G~~l~~~~~~~~~~~~~l~~~i~~ll~ 427 (478)
.+|+|++--..+... ....+.|+--.+.+- ++.++|.++|++++.
T Consensus 77 ~~pii~~s~~~~~~~--~~~~~~g~~~~l~KP-----~~~~~l~~~i~~~l~ 121 (133)
T 3nhm_A 77 HIPVIFVSGYAPRTE--GPADQPVPDAYLVKP-----VKPPVLIAQLHALLA 121 (133)
T ss_dssp TCCEEEEESCCC-------TTSCCCSEEEESS-----CCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHhH--HHHhhcCCceEEecc-----CCHHHHHHHHHHHHh
Confidence 688888876555443 556666765556554 799999999999998
No 476
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=20.48 E-value=1.4e+02 Score=27.56 Aligned_cols=29 Identities=0% Similarity=-0.028 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEEecCCC
Q 011765 290 PSQEELTEIALGLELSKLPFFWVLKKRLG 318 (478)
Q Consensus 290 ~~~~~~~~~~~al~~~~~~~i~~~~~~~~ 318 (478)
.+.+....+.+++....++.||...++.+
T Consensus 62 ~d~~Ra~dL~~a~~Dp~i~aI~~~rGG~g 90 (331)
T 4e5s_A 62 SISSRVQDLHEAFRDPNVKAILTTLGGYN 90 (331)
T ss_dssp CHHHHHHHHHHHHHCTTEEEEEESCCCSC
T ss_pred CHHHHHHHHHHHhhCCCCCEEEEcccccc
Confidence 45678888999999889999999887643
No 477
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=20.37 E-value=1.1e+02 Score=23.23 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=22.5
Q ss_pred HHHHHHhhcCCCEEEEcCCccc--HHHHHHH-------hCCCeEEEec
Q 011765 101 PMAKLLQSLAPDWLLFDFAAYW--LPARARE-------LGIPSGFFSI 139 (478)
Q Consensus 101 ~l~~ll~~~~pD~vI~D~~~~~--~~~~A~~-------lgIP~i~~~~ 139 (478)
...+.+++.+||+||.|...+. +..+.+. -++|+|.+..
T Consensus 37 ~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~ 84 (140)
T 3n53_A 37 EALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFS 84 (140)
T ss_dssp HHHHHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEEC
T ss_pred HHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEec
Confidence 3344556678999999975442 2222222 4678887755
No 478
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=20.33 E-value=1.6e+02 Score=20.93 Aligned_cols=38 Identities=16% Similarity=0.024 Sum_probs=23.3
Q ss_pred HHHHHhhcCCCEEEEcCCcc--cHHHHHHH-------hCCCeEEEec
Q 011765 102 MAKLLQSLAPDWLLFDFAAY--WLPARARE-------LGIPSGFFSI 139 (478)
Q Consensus 102 l~~ll~~~~pD~vI~D~~~~--~~~~~A~~-------lgIP~i~~~~ 139 (478)
..+.+...+||+||.|.... .+..+.+. -++|+|.+..
T Consensus 37 ~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~ 83 (119)
T 2j48_A 37 ALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLG 83 (119)
T ss_dssp HHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEES
T ss_pred HHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeC
Confidence 34455566899999996543 23333222 3688887755
No 479
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=20.33 E-value=78 Score=28.80 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=24.4
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
.|+||+.. +.|.+ -..|++.|.++||+|+.+...
T Consensus 20 ~~~vlVTG--asG~i--G~~l~~~L~~~g~~V~~~~r~ 53 (330)
T 2pzm_A 20 HMRILITG--GAGCL--GSNLIEHWLPQGHEILVIDNF 53 (330)
T ss_dssp CCEEEEET--TTSHH--HHHHHHHHGGGTCEEEEEECC
T ss_pred CCEEEEEC--CCCHH--HHHHHHHHHHCCCEEEEEECC
Confidence 47777763 33333 257899999999999988753
No 480
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Probab=20.32 E-value=98 Score=28.93 Aligned_cols=35 Identities=9% Similarity=0.262 Sum_probs=24.7
Q ss_pred CccEEEEecCCCccCHHHHHHHHHHHH-hCCCeEEEEeCC
Q 011765 5 SKLQIAMFPWLAFGHMIPWLELAKLIA-QKGHKIFFISTP 43 (478)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~La~~L~-~rGh~Vt~~~~~ 43 (478)
+.|+||+.- +.|.+ -..|++.|. ++||+|+.+...
T Consensus 1 s~m~vlVTG--atG~i--G~~l~~~L~~~~g~~V~~~~r~ 36 (397)
T 1gy8_A 1 SHMRVLVCG--GAGYI--GSHFVRALLRDTNHSVVIVDSL 36 (397)
T ss_dssp CCCEEEEET--TTSHH--HHHHHHHHHHHCCCEEEEEECC
T ss_pred CCCEEEEEC--CCCHH--HHHHHHHHHHhCCCEEEEEecC
Confidence 357877763 34433 356889999 999999988643
No 481
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Probab=20.30 E-value=97 Score=28.41 Aligned_cols=34 Identities=9% Similarity=-0.004 Sum_probs=24.1
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
+|+||+.. +.|-+ -..|++.|.++||+|+.++..
T Consensus 27 ~~~vlVtG--atG~i--G~~l~~~L~~~g~~V~~~~r~ 60 (352)
T 1sb8_A 27 PKVWLITG--VAGFI--GSNLLETLLKLDQKVVGLDNF 60 (352)
T ss_dssp CCEEEEET--TTSHH--HHHHHHHHHHTTCEEEEEECC
T ss_pred CCeEEEEC--CCcHH--HHHHHHHHHHCCCEEEEEeCC
Confidence 46777663 33333 356899999999999988754
No 482
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=20.29 E-value=1.2e+02 Score=27.30 Aligned_cols=39 Identities=13% Similarity=0.298 Sum_probs=29.5
Q ss_pred CCccEEEEecCCCccCHHH--HHHHHHHHHhCC-CeEEEEeCC
Q 011765 4 NSKLQIAMFPWLAFGHMIP--WLELAKLIAQKG-HKIFFISTP 43 (478)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p--~l~La~~L~~rG-h~Vt~~~~~ 43 (478)
.++.|||+++- ..+|-.+ ...|++.|.+.| .+|++...+
T Consensus 2 ~~~~kvLiv~G-~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~ 43 (281)
T 4e5v_A 2 RKPIKTLLITG-QNNHNWQVSHVVLKQILENSGRFDVDFVISP 43 (281)
T ss_dssp CCCEEEEEEES-CCSSCHHHHHHHHHHHHHHTTSEEEEEEECC
T ss_pred CCceEEEEEcC-CCCCChHHHHHHHHHHHHhcCCEEEEEEeCC
Confidence 46899999944 3388644 357788888888 999998765
No 483
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=20.27 E-value=2e+02 Score=23.80 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=29.4
Q ss_pred ccEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 6 KLQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
++||+++-+++..- .-+....+.|.+.|++|++++...
T Consensus 23 ~~kV~ill~~g~~~-~e~~~~~~~l~~ag~~v~~vs~~~ 60 (193)
T 1oi4_A 23 SKKIAVLITDEFED-SEFTSPADEFRKAGHEVITIEKQA 60 (193)
T ss_dssp CCEEEEECCTTBCT-HHHHHHHHHHHHTTCEEEEEESST
T ss_pred CCEEEEEECCCCCH-HHHHHHHHHHHHCCCEEEEEECCC
Confidence 57899988876543 345567788888999999998765
No 484
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=20.27 E-value=1.4e+02 Score=22.43 Aligned_cols=38 Identities=5% Similarity=-0.126 Sum_probs=25.3
Q ss_pred HHHHHHhh-cCCCEEEEcCCcc--cHHHHHHHh-----CCCeEEEe
Q 011765 101 PMAKLLQS-LAPDWLLFDFAAY--WLPARAREL-----GIPSGFFS 138 (478)
Q Consensus 101 ~l~~ll~~-~~pD~vI~D~~~~--~~~~~A~~l-----gIP~i~~~ 138 (478)
...+.++. ..||+||.|...+ .+..+.+.+ ++|+|.+.
T Consensus 50 ~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ls 95 (138)
T 2b4a_A 50 AFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLILT 95 (138)
T ss_dssp HHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEEE
T ss_pred HHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEE
Confidence 34455667 7899999997554 355555444 47777775
No 485
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=20.20 E-value=1e+02 Score=23.10 Aligned_cols=39 Identities=18% Similarity=0.003 Sum_probs=28.1
Q ss_pred ccEEEEe--cCCCccCHHHHH-HHHHHHHhCCCeEEEEeCCC
Q 011765 6 KLQIAMF--PWLAFGHMIPWL-ELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 6 ~~~il~~--~~~~~gH~~p~l-~La~~L~~rGh~Vt~~~~~~ 44 (478)
+|||+.+ |..+..|.+-.. .|=++-.++||++.+=+...
T Consensus 2 ~mkivaVtaCptGiAhTymAAeaLekaA~~~G~~ikVEtqgs 43 (106)
T 2m1z_A 2 KRKIIAVTACATGVAHTYMAAQALKKGAKKMGNLIKVETQGA 43 (106)
T ss_dssp CCEEEEEEECSSCHHHHHHHHHHHHHHHHHHTCEEEEEEEET
T ss_pred CccEEEEEECCCcHHHHHHHHHHHHHHHHHCCCEEEEEEecC
Confidence 4788887 677779988844 44444456799999877554
No 486
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*
Probab=20.09 E-value=1.3e+02 Score=25.99 Aligned_cols=33 Identities=21% Similarity=0.173 Sum_probs=22.6
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011765 7 LQIAMFPWLAFGHMIPWLELAKLIAQKGHKIFFIST 42 (478)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~ 42 (478)
||.++++..+. - =-..+|+.|+++|++|+++..
T Consensus 1 mk~vlVTGas~-g--IG~~~a~~l~~~G~~V~~~~r 33 (257)
T 1fjh_A 1 MSIIVISGCAT-G--IGAATRKVLEAAGHQIVGIDI 33 (257)
T ss_dssp CCEEEEETTTS-H--HHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEeCCCC-H--HHHHHHHHHHHCCCEEEEEeC
Confidence 45555554443 2 245789999999999998754
No 487
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=20.03 E-value=1e+02 Score=28.80 Aligned_cols=39 Identities=23% Similarity=0.346 Sum_probs=32.0
Q ss_pred CccEEEEe--cCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011765 5 SKLQIAMF--PWLAFGHMIPWLELAKLIAQKGHKIFFISTP 43 (478)
Q Consensus 5 ~~~~il~~--~~~~~gH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (478)
+++|++.+ +-++.|-..-..+||..|+++|++|.++-.+
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 35666544 3567899999999999999999999999866
No 488
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=20.03 E-value=1.9e+02 Score=25.03 Aligned_cols=39 Identities=13% Similarity=0.131 Sum_probs=27.8
Q ss_pred ccEEEEecCCCc----------c-CHHHHHHHHHHHHhCCCeEEEEeCCC
Q 011765 6 KLQIAMFPWLAF----------G-HMIPWLELAKLIAQKGHKIFFISTPR 44 (478)
Q Consensus 6 ~~~il~~~~~~~----------g-H~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (478)
++|||++..... | ...=+....+.|.+.|++|++++...
T Consensus 3 m~kvLivls~~~~~~~~~~~~~G~~~~E~~~p~~vl~~ag~~v~~~s~~g 52 (243)
T 1rw7_A 3 PKKVLLALTSYNDVFYSDGAKTGVFVVEALHPFNTFRKEGFEVDFVSETG 52 (243)
T ss_dssp CCEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CceEEEEECCCCcccCCCCCCCccCHHHHHHHHHHHHHCCCEEEEECCCC
Confidence 458888765321 1 34556777888999999999998764
No 489
>2hbv_A 2-amino-3-carboxymuconate 6-semialdehyde decarbox; ACMSD, TIM-barrel, decarboxylase, metaloenzyme, lyase; 1.65A {Pseudomonas fluorescens} SCOP: c.1.9.15 PDB: 2hbx_A
Probab=20.02 E-value=2.7e+02 Score=25.16 Aligned_cols=73 Identities=5% Similarity=-0.013 Sum_probs=37.3
Q ss_pred HHHhhcCCCeeeeccCCCCCCCCCCCCCCCChhhHhhhcccCCCCceEEEEeCcccCCCHHHHHHHHHHHHhCCCCEEEE
Q 011765 233 LLEQLHRKPVIPVGQLPTTTGDGDSDAETDTWRSIKEWLDEQEKGSVVYVAFGSEAKPSQEELTEIALGLELSKLPFFWV 312 (478)
Q Consensus 233 ~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~ 312 (478)
......|.++..++.+..... ....+++.+++ ..+-+.+-+-..+.-...+...+..+.+.+++.+..+++=
T Consensus 106 ~~~~~~p~r~~~~~~l~~~~~-------~~a~~el~~~~-~~g~~Gv~l~~~~~~~~l~d~~~~p~~~~~~e~~lpv~iH 177 (334)
T 2hbv_A 106 EFAAHNPQRIKVLAQVPLQDL-------DLACKEASRAV-AAGHLGIQIGNHLGDKDLDDATLEAFLTHCANEDIPILVH 177 (334)
T ss_dssp HHHTTCTTTEEECBCCCTTSH-------HHHHHHHHHHH-HHTCCCEEEESCBTTBCTTSHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHhhCCCeEEEEEecCccCH-------HHHHHHHHHHH-HcCCeEEEECCCCCCCCCCcHHHHHHHHHHHHCCCEEEEC
Confidence 334445555655554543211 11235677776 3332333221111111245577888999999999886554
Q ss_pred E
Q 011765 313 L 313 (478)
Q Consensus 313 ~ 313 (478)
.
T Consensus 178 ~ 178 (334)
T 2hbv_A 178 P 178 (334)
T ss_dssp C
T ss_pred C
Confidence 3
Done!