BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011766
(478 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HPA|A Chain A, Crystal Structure Of An Amidohydrolase Gi:44264246 From An
Evironmental Sample Of Sargasso Sea
pdb|3HPA|B Chain B, Crystal Structure Of An Amidohydrolase Gi:44264246 From An
Evironmental Sample Of Sargasso Sea
Length = 479
Score = 182 bits (463), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 132/457 (28%), Positives = 227/457 (49%), Gaps = 45/457 (9%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
++ H V+VTMD R R+ G+++ +RI A+G SA++ + AD+++DL+ +++P
Sbjct: 32 LVKHADVLVTMDDTRRELRDAGLYIEDNRIVAVGPSAEL----PETADEVLDLRGHLVIP 87
Query: 81 GFVNTHVHTSQQLAKGI--ADDVDLMTWLHD--RIWPYESNMTEEDSYISTLLCGIELIH 136
G VNTH H Q L + + A + +L WL + +IW +++T E +STL EL+
Sbjct: 88 GLVNTHHHMYQSLTRAVPAAQNAELFGWLTNLYKIW---AHLTPEMIEVSTLTAMAELLQ 144
Query: 137 SGVTCFAE-----AGGQHVSEMAKAVELLGLRACLVQSTMDCGE---GLPASWAVRTTDD 188
SG T ++ G + + A + +G+R + M G+ GLP V D
Sbjct: 145 SGCTTSSDHLYIYPNGSRLDDSIGAAQRIGMRFHASRGAMSVGQRDGGLPPDSVVEREPD 204
Query: 189 CIQPDXXXXXXXXXXXQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFK 248
++ Q+ + H +R+ + + L+ + +ARE+
Sbjct: 205 ILR-----------DTQRLIETYHDEGRYAMLRVVVAPCSPFSVSRDLMRDAAVLAREYG 253
Query: 249 TGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRA 308
+H H+AE N + K + + + ++ +++ AH V ++ IGL +R
Sbjct: 254 VSLHTHLAE--NVNDIAYSREKFGMTPAEYAEDLGWVGHDVWHAHCVQLDDAGIGLFART 311
Query: 309 GVKVSHCPASAMRML-GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGR 367
G V+HCP S MR+ G AP+K+M A + V LG DG+ SN+ +V E+ A L+ R
Sbjct: 312 GTGVAHCPCSNMRLASGIAPVKKMRLAGVPVGLGVDGSASNDGAQMVAEVRQALLLQ--R 369
Query: 368 EVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMV-- 425
F P A+ A L +AT+ GAK VL +DIG+L+ G AD D P+
Sbjct: 370 VGFG-----PDAMTAREALEIATLGGAK-VLNRDDIGALKPGMAADFAAFD-LRQPLFAG 422
Query: 426 PVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLL 462
+HD + +LV+C ++ +V+ NG+ V++ ++ L
Sbjct: 423 ALHDPVAALVFCAPSQTAYTVV-NGKVVVREGRLATL 458
>pdb|3LNP|A Chain A, Crystal Structure Of Amidohydrolase Family Protein
Olei01672_1_465 From Oleispira Antarctica
Length = 468
Score = 177 bits (450), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 124/416 (29%), Positives = 201/416 (48%), Gaps = 39/416 (9%)
Query: 67 ADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYIS 126
A + +DL Q+L PG+VN H H + L +G+ADD+ L TWL + +WP E+ +E ++
Sbjct: 73 ATETLDLGQQVLXPGWVNAHGHAAXSLFRGLADDLPLXTWLQEHVWPAEAQHVDE-HFVK 131
Query: 127 --TLLCGIELIHSGVTCFAEA--GGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWA 182
T L E I SG T FA+ Q E A A G+RA +D P ++A
Sbjct: 132 QGTELAIAEXIQSGTTTFADXYFYPQQSGEAALAA---GIRAVCFAPVLD----FPTNYA 184
Query: 183 VRTTDDCIQPDXXXXXXXXXXXQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRD 242
+ D+ I+ + + H G ++I FG +D L E
Sbjct: 185 -QNADEYIR---------KAIECNDRFNNHPXNEQGLVQIGFGPHAPYTVSDEPLKEITX 234
Query: 243 MAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEI 302
++ + + +H+ E +E ++T + L I FL + H V+ +I
Sbjct: 235 LSDQLDXPVQIHLHETDFEVSESLET--FNKRPTQRLADIGFLNERVSCVHXTQVDDGDI 292
Query: 303 GLLSRAGVKVSHCPASAMRML-GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLAS 361
+L + G + HCP S +++ GF PI ++ A+I +++GTDGA SNN + E A+
Sbjct: 293 KILQKTGASIIHCPESNLKLASGFCPIAKLSAANIPLAIGTDGAASNNDLDXFSETKTAA 352
Query: 362 LINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFS 421
L+ KG + D +A+PA L AT+ GA+++ D+ GSL+ GK AD+ +D +
Sbjct: 353 LLAKGV------SQDASAIPAIEALTXATLGGARALGIDDITGSLKPGKAADIQAIDLNT 406
Query: 422 WPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKLLMN 477
PV D ++ VYC ++ V V NG+ ++KN G L L ++ L+N
Sbjct: 407 LSSQPVFDPVSHXVYCTKSTQVSHVWVNGRCLLKN--------GELTTLNEETLIN 454
>pdb|4DYK|A Chain A, Crystal Structure Of An Adenosine Deaminase From
Pseudomonas Aeruginosa Pao1 (Target Nysgrc-200449) With
Bound Zn
pdb|4DYK|B Chain B, Crystal Structure Of An Adenosine Deaminase From
Pseudomonas Aeruginosa Pao1 (Target Nysgrc-200449) With
Bound Zn
Length = 451
Score = 175 bits (443), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 130/436 (29%), Positives = 207/436 (47%), Gaps = 35/436 (8%)
Query: 28 IVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHV 87
IV ++ V R+ + + +I + Q A +I +L +L PG VN H
Sbjct: 17 IVPVEPAGVVLRDHALGIRDGQIALVAPRE---QAMRHGATEIRELPGMLLAPGLVNAHG 73
Query: 88 HTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYI--STLLCGIELIHSGVTCFAEA 145
H++ L +G+ADD+ LMTWL D IWP E ED +I T L E + G+TCF++
Sbjct: 74 HSAMSLFRGLADDLPLMTWLQDHIWPAEGQWVSED-FIRDGTELAIAEQVKGGITCFSDM 132
Query: 146 GGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDXXXXXXXXXXXQ 205
+ + V G+RA + +D P A R + + I+
Sbjct: 133 Y-FYPQAICGVVHDSGVRAQVAIPVLD----FPIPGA-RDSAEAIRQGMALFDDL----- 181
Query: 206 KELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVV 265
KHH RIRI FG +D L + + E I MHV E +E +
Sbjct: 182 -----KHHP----RIRIAFGPHAPYTVSDDKLEQILVLTEELDASIQMHVHETAFEVEQA 232
Query: 266 MDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRML-G 324
M+ + + L ++ L + H V++ ++ +L V HCP S +++ G
Sbjct: 233 ME--RNGERPLARLHRLGLLGPRFQAVHMTQVDNDDLAMLVETNSSVIHCPESNLKLASG 290
Query: 325 FAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAET 384
F P++++ A + V++GTDGA SNN + ++ E A+L+ K V+ T AL A
Sbjct: 291 FCPVEKLWQAGVNVAIGTDGAASNNDLDLLGETRTAALLAKA--VYGQAT----ALDAHR 344
Query: 385 VLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVV 444
LRMAT+NGA+++ + IGSLEAGK AD+V D PV+D ++ L+Y + V
Sbjct: 345 ALRMATLNGARALGLERLIGSLEAGKAADLVAFDLSGLAQQPVYDPVSQLIYASGRDCVR 404
Query: 445 SVMCNGQWVMKNKKIL 460
V G+ ++ + ++L
Sbjct: 405 HVWVGGRQLLDDGRLL 420
>pdb|4F0R|A Chain A, Crystal Structure Of An Adenosine Deaminase Homolog From
Chromobacterium Violaceum (Target Nysgrc-019589) Bound
Zn And 5'- Methylthioadenosine (Unproductive Complex)
pdb|4F0S|A Chain A, Crystal Structure Of An Adenosine Deaminase Homolog From
Chromobacterium Violaceum (Target Nysgrc-019589) With
Bound Inosine
Length = 447
Score = 155 bits (393), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 110/400 (27%), Positives = 189/400 (47%), Gaps = 34/400 (8%)
Query: 67 ADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEED-SYI 125
AD+ ++L +L PG +N H H++ L +G+ADD L WL + IWP E +D +
Sbjct: 51 ADERLELPDHVLXPGLINLHGHSAXSLLRGLADDKALXDWLTNYIWPTEGKHVHDDFVFD 110
Query: 126 STLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRT 185
+LL E I G T + + + +A+A G R + S ++ P ++A
Sbjct: 111 GSLLAXGEXIRGGTTTINDXYFYNAA-VARAGLASGXRTFVGCSILE----FPTNYA-SN 164
Query: 186 TDDCIQPDXXXXXXXXXXXQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAR 245
DD I K + + + +D + +A
Sbjct: 165 ADDYIA--------------KGXAERSQFLGEDLLTFTLAPHAPYTVSDDTFRKVVTLAE 210
Query: 246 EFKTGIHMHVAEIPYENQVVMDTRKVDHG--TVTFLDKIEFLQNNLLSAHTVWVNHTEIG 303
+ IH H+ E E ++ +HG + L ++ L L++AH V +N E+
Sbjct: 211 QEDXLIHCHIHETADE----VNNSVKEHGQRPLARLQRLGLLSPRLVAAHXVHLNDAEVE 266
Query: 304 LLSRAGVKVSHCPASAMRML-GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASL 362
L +R G+ +H PAS ++ G +P+ ++ A + V +GTDGA SNN++ + E LA+L
Sbjct: 267 LAARHGLSTAHNPASNXKLASGISPVSKLXDAGVAVGIGTDGAASNNKLDXLAETRLAAL 326
Query: 363 INKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSW 422
+ K GT DP ++PA +R AT+NGA+++ + +GS++ GK+AD++ +D
Sbjct: 327 LAK------VGTLDPTSVPAAAAIRXATLNGARALGIADKVGSVKVGKQADLIALDLAQL 380
Query: 423 PMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLL 462
P D I+ +VY E V V G+ + + +K+ L
Sbjct: 381 ETAPAFDPISHVVYAAGREQVSHVWVKGRALXRERKLTTL 420
>pdb|4DZH|A Chain A, Crystal Structure Of An Adenosine Deaminase From
Xanthomonas Campestris (Target Nysgrc-200456) With Bound
Zn
Length = 472
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 120/443 (27%), Positives = 200/443 (45%), Gaps = 34/443 (7%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+++ +V ++ + V + V V I A+ +AD +F+ + + L+P
Sbjct: 16 LLIEAGYVVPIEPHAVVLEDHAVAVSNGVIVAVLPTADARVRFAPA--RTVSRPDAALMP 73
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMT-EEDSYISTLLCGIELIHSGV 139
G VN H H L +G+ADD+ LM WL IWP E+ + E T L E++ G
Sbjct: 74 GLVNAHTHNPMTLLRGVADDLPLMVWLQQHIWPVEAAVIGPEFVADGTTLAIAEMLRGGT 133
Query: 140 TCFAEAGGQHVSEMAKAV-ELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDXXXXX 198
TC E +++ AV + G RA + +D P +WA ++DD
Sbjct: 134 TCVNE--NYFFADVQAAVYKQHGFRALVGAVIID----FPTAWA--SSDD---------- 175
Query: 199 XXXXXXQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEI 258
EL+ + D I F D R +A + +H+H E
Sbjct: 176 -EYFARAGELHDQWRD--DPLISTAFAPHAPYTVNDANFERVRMLADQLDMPVHLHTHET 232
Query: 259 PYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPAS 318
E V + + LD++ + + L++ H + EI L + GV V HCP S
Sbjct: 233 AQE--VADSVAQYGQRPLARLDRLGLVNDRLIAVHMTQLTEAEIHLCAERGVSVVHCPES 290
Query: 319 AMRML-GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDP 377
+++ GF P + A + +++GTDG SNN + + E A+++ K AN T
Sbjct: 291 NLKLASGFCPACALQRASVNLAIGTDGCASNNDLDMFSENRTAAILAKA---VANDAT-- 345
Query: 378 AALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYC 437
AL A T LR AT+ GA+++ + + IGS+E GK+AD+V VD + P+H ++ L+Y
Sbjct: 346 -ALDAATTLRAATLGGARALGFGDRIGSIEVGKQADLVCVDLSALETQPLHHVLSQLIYA 404
Query: 438 MRTENVVSVMCNGQWVMKNKKIL 460
V V G+ + ++++
Sbjct: 405 AGRHQVTDVWIAGKPKLVQRELI 427
>pdb|1P1M|A Chain A, Structure Of Thermotoga Maritima Amidohydrolase Tm0936
Bound To Ni And Methionine
pdb|2PLM|A Chain A, Crystal Structure Of The Protein Tm0936 From Thermotoga
Maritima Complexed With Zn And S-Inosylhomocysteine
Length = 406
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 108/384 (28%), Positives = 178/384 (46%), Gaps = 46/384 (11%)
Query: 71 IDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLC 130
+DL ++++P NTH H L +G+A+D+ WL ++ P E +TE+ +Y T+L
Sbjct: 40 LDLSGKLVMPALFNTHTHAPMTLLRGVAEDLSFEEWLFSKVLPIEDRLTEKMAYYGTILA 99
Query: 131 GIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCI 190
+E+ G+ F + H +AKAV G+RA L + +D DD
Sbjct: 100 QMEMARHGIAGFVDMY-FHEEWIAKAVRDFGMRALLTRGLVDS-----------NGDDGG 147
Query: 191 QPDXXXXXXXXXXXQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTG 250
+ + +LY + +GRI + FG ++ L D A+
Sbjct: 148 RLEENL----------KLY-NEWNGFEGRIFVGFGPHSPYLCSEEYLKRVFDTAKSLNAP 196
Query: 251 IHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGV 310
+ +H+ E E + D + V ++AH V + G+L
Sbjct: 197 VTIHLYETSKEEYDLEDILNIGLKEV-----------KTIAAHCVHLPERYFGVLKDIPF 245
Query: 311 KVSHCPASAMRML-GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREV 369
VSH PAS +++ G AP++ M+ + V+LGTDGA SNN +++ EM LASL+ K +
Sbjct: 246 FVSHNPASNLKLGNGIAPVQRMIEHGMKVTLGTDGAASNNSLNLFFEMRLASLLQKAQ-- 303
Query: 370 FANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHD 429
+P L T L+M T +GA+++ + + G +E G AD+VV+D M PV +
Sbjct: 304 ------NPRNLDVNTCLKMVTYDGAQAMGFKS--GKIEEGWNADLVVIDLDLPEMFPVQN 355
Query: 430 RITSLVYCMRTENVVSVMCNGQWV 453
LV+ E V + M G+W+
Sbjct: 356 IKNHLVHAFSGE-VFATMVAGKWI 378
>pdb|1J6P|A Chain A, Crystal Structure Of Metal-Dependent Hydrolase Of
CytosinedemaniaseCHLOROHYDROLASE FAMILY (TM0936) FROM
THERMOTOGA Maritima At 1.9 A Resolution
Length = 418
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 103/385 (26%), Positives = 167/385 (43%), Gaps = 46/385 (11%)
Query: 71 IDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLC 130
+DL +++ P NTH H L +G+A+D+ WL ++ P E +TE+ +Y T+L
Sbjct: 52 LDLSGKLVXPALFNTHTHAPXTLLRGVAEDLSFEEWLFSKVLPIEDRLTEKXAYYGTILA 111
Query: 131 GIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCI 190
E G+ F + H +AKAV G RA L + +D DD
Sbjct: 112 QXEXARHGIAGFVDXY-FHEEWIAKAVRDFGXRALLTRGLVDS-----------NGDDGG 159
Query: 191 QPDXXXXXXXXXXXQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTG 250
+ + +LY + +GRI + FG ++ L D A+
Sbjct: 160 RLEENL----------KLY-NEWNGFEGRIFVGFGPHSPYLCSEEYLKRVFDTAKSLNAP 208
Query: 251 IHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGV 310
+ +H+ E E + D + V ++AH V + G+L
Sbjct: 209 VTIHLYETSKEEYDLEDILNIGLKEV-----------KTIAAHCVHLPERYFGVLKDIPF 257
Query: 311 KVSHCPASAMRML-GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREV 369
VSH PAS +++ G AP++ + V+LGTDGA SNN +++ E LASL+ K +
Sbjct: 258 FVSHNPASNLKLGNGIAPVQRXIEHGXKVTLGTDGAASNNSLNLFFEXRLASLLQKAQ-- 315
Query: 370 FANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHD 429
+P L T L+ T +GA++ + + G +E G AD+VV+D PV +
Sbjct: 316 ------NPRNLDVNTCLKXVTYDGAQAXGFKS--GKIEEGWNADLVVIDLDLPEXFPVQN 367
Query: 430 RITSLVYCMRTENVVSVMCNGQWVM 454
LV+ E V + G+W+
Sbjct: 368 IKNHLVHAFSGE-VFATXVAGKWIY 391
>pdb|2PAJ|A Chain A, Crystal Structure Of An Amidohydrolase From An
Environmental Sample Of Sargasso Sea
Length = 492
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 122/474 (25%), Positives = 205/474 (43%), Gaps = 60/474 (12%)
Query: 20 TMILHNAVIVT-----MDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQ 74
T+I + A I+T D SRV + +V D I AIG A + + I+D
Sbjct: 12 TLIRNAAAIMTGGRGTADDPSRV-PGPDIRIVGDTIDAIGALA------PRPGETIVDAT 64
Query: 75 SQILLPGFVNTHVHTSQQLAKGIADDVD--LMTWLHDRIWPYESNMTEEDSYISTLLCGI 132
++ P +VNTH H Q L KG +D L WL + + + E ++ + I
Sbjct: 65 DCVIYPAWVNTHHHLFQSLLKGEPAGLDATLTPWLAATPYRFRALFDERRFRLAARIGLI 124
Query: 133 ELIHSGVTCFAEAGGQHVSEMA--------KAVELLGLRACLVQS----TMDCGEGLPAS 180
EL SG A+ + M + E LGLR L++ T LP +
Sbjct: 125 ELARSGCATVADHNYVYYPGMPFDSSAILFEEAEKLGLRFVLLRGGATQTRQLEADLPTA 184
Query: 181 WAVRTTDDCIQPDXXXXXXXXXXXQKELYAKHHHAADGRIR--IWFGIRQIMNATDRLLL 238
T D + + L A++H A+ +R + + + + R +
Sbjct: 185 LRPETLDAYV------------ADIERLAARYHDASPRAMRRVVMAPTTVLYSISPREMR 232
Query: 239 ETRDMAREFKTGIHMHVAE-IPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV 297
ET +AR +H H++E + Y++ K V F + ++L +++ AH V V
Sbjct: 233 ETAAVARRLGLRMHSHLSETVGYQDSAYSMYGK---SPVAFCGEHDWLGSDVWYAHLVKV 289
Query: 298 NHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDE 356
+ EI LL++ G V+HCP S R+ G P++EM A + VS+G DGA SN ++ E
Sbjct: 290 DADEIALLAQTGTGVAHCPQSNGRLGSGICPVREMADAGVPVSIGVDGAASNEAADMISE 349
Query: 357 MYLASLINKGR------EVFANGTTDPAALPAE--TVLRMATINGAKSVLWDNDIGSLEA 408
+++ L + R + G+ + A A V+ T GA+ V+ +++G +
Sbjct: 350 VHMTWLAQRARLGMLAQPAYRGGSFEGGAGAASIAEVIHWGTAGGAR-VMGLDEVGKVAV 408
Query: 409 GKKADMVVV---DPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKI 459
G AD+ V DP + + HD V +V+++ G+ V+ + I
Sbjct: 409 GYAADIAVYRLDDPRYFGL---HDPAIGPVASGGRPSVMALFSAGKRVVVDDLI 459
>pdb|3LS9|A Chain A, Crystal Structure Of Atrazine Chlorohydrolase Trzn From
Arthrobacter Aurescens Tc1 Complexed With Zinc
pdb|3LS9|B Chain B, Crystal Structure Of Atrazine Chlorohydrolase Trzn From
Arthrobacter Aurescens Tc1 Complexed With Zinc
Length = 456
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 113/458 (24%), Positives = 190/458 (41%), Gaps = 53/458 (11%)
Query: 28 IVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHV 87
++T D + R + + + +I A+G+ + + ID + I LPG +N+H
Sbjct: 10 VITFDDQERELEDADILIDGPKIVAVGKDLS-----DRSVSRTIDGRGMIALPGLINSHQ 64
Query: 88 HTSQQLAKGIA--DDVDLMTWLHD---------RIWPYESNMTEEDS---YISTLLCGIE 133
H + + I + V + +WL R + ++ E + + +LL GI
Sbjct: 65 HLYEGAMRAIPQLERVTMASWLEGVLTRSAGWWRDGKFGPDVIREVARAVLLESLLGGIT 124
Query: 134 LIHSGVTCFAEA-GGQHVSEMAKAVELLGLRACLVQSTMDCGE---GLPASWAVRTTDDC 189
+ F A ++ +A LG+R +S+M G+ G V D
Sbjct: 125 TVADQHLFFPGATADSYIDATIEAATDLGIRFHAARSSMTLGKSEGGFCDDLFVEPVDRV 184
Query: 190 IQPDXXXXXXXXXXXQKELYAKHHHAAD-GRIRIWFGIRQIMNATDRLLLETRDMAREFK 248
+Q L ++H G +RI G + L MA ++
Sbjct: 185 VQ------------HCLGLIDQYHEPEPFGMVRIALGPCGVPYDKPELFEAFAQMAADYD 232
Query: 249 TGIHMHVAEIPYENQVVMDTRKVDH----GTVTFLDKIEFLQNNLLSAHTVWVNHTEIGL 304
+H H E +D DH FL+K + + + AH V EI
Sbjct: 233 VRLHTHFYE-------PLDAGMSDHLYGMTPWRFLEKHGWASDRVWLAHAVVPPREEIPE 285
Query: 305 LSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLI 363
+ AGV ++H A +RM G API+E L A I V GT G+ SN+ +++ ++ LA+L
Sbjct: 286 FADAGVAIAHLIAPDLRMGWGLAPIREYLDAGITVGFGTTGSASNDGGNLLGDLRLAALA 345
Query: 364 NKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWP 423
++ A+ L A +LRMAT G+ L D+G LE G+ AD+
Sbjct: 346 HRP----ADPNEPEKWLSARELLRMAT-RGSAECLGRPDLGVLEEGRAADIACWRLDGVD 400
Query: 424 MVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILL 461
V VHD L+ ++ V+ NGQ +++N++ +L
Sbjct: 401 RVGVHDPAIGLIMTGLSDRASLVVVNGQVLVENERPVL 438
>pdb|2UZ9|A Chain A, Human Guanine Deaminase (Guad) In Complex With Zinc And
Its Product Xanthine.
pdb|4AQL|A Chain A, Human Guanine Deaminase In Complex With Valacyclovir
Length = 476
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/364 (23%), Positives = 157/364 (43%), Gaps = 53/364 (14%)
Query: 76 QILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTE----EDSYI------ 125
+ +PG V+TH+H SQ G + D+ L+ WL +P E E+ Y
Sbjct: 94 EFFMPGLVDTHIHASQYSFAGSSIDLPLLEWLTKYTFPAEHRFQNIDFAEEVYTRVVRRT 153
Query: 126 ----STLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASW 181
+T C IH+ + +A + G RA + + MD + P
Sbjct: 154 LKNGTTTACYFATIHTDSSLL----------LADITDKFGQRAFVGKVCMDLNDTFPE-- 201
Query: 182 AVRTTDDCIQPDXXXXXXXXXXXQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETR 241
TT++ I+ E+ K++ R++ R ++ ++ L+ E
Sbjct: 202 YKETTEESIKETERFV--------SEMLQKNY----SRVKPIVTPRFSLSCSETLMGELG 249
Query: 242 DMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTE 301
++A+ I H++E E + V + + DK L N + AH +++ E
Sbjct: 250 NIAKTRDLHIQSHISENRDEVEAVKNLYPSYKNYTSVYDKNNLLTNKTVMAHGCYLSAEE 309
Query: 302 IGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTD--GAPSNNRMSIVDEMY 358
+ + G ++HCP S + + GF + E+L ++ + LGTD G S + + +
Sbjct: 310 LNVFHERGASIAHCPNSNLSLSSGFLNVLEVLKHEVKIGLGTDVAGGYSYSMLDAIRRAV 369
Query: 359 LAS---LINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMV 415
+ S LINK E +L + V R+AT+ G++++ D +IG+ E GK+ D +
Sbjct: 370 MVSNILLINKVNE---------KSLTLKEVFRLATLGGSQALGLDGEIGNFEVGKEFDAI 420
Query: 416 VVDP 419
+++P
Sbjct: 421 LINP 424
>pdb|3LSB|A Chain A, Crystal Structure Of The Mutant E241q Of Atrazine
Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1
Complexed With Zinc And Ametrin
pdb|3LSB|B Chain B, Crystal Structure Of The Mutant E241q Of Atrazine
Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1
Complexed With Zinc And Ametrin
pdb|3LSC|A Chain A, Crystal Structure Of The Mutant E241q Of Atrazine
Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1
Complexed With Zinc And Atraton
pdb|3LSC|B Chain B, Crystal Structure Of The Mutant E241q Of Atrazine
Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1
Complexed With Zinc And Atraton
Length = 456
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 112/458 (24%), Positives = 190/458 (41%), Gaps = 53/458 (11%)
Query: 28 IVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHV 87
++T D + R + + + +I A+G+ + + ID + I LPG +N+H
Sbjct: 10 VITFDDQERELEDADILIDGPKIVAVGKDLS-----DRSVSRTIDGRGMIALPGLINSHQ 64
Query: 88 HTSQQLAKGIA--DDVDLMTWLHD---------RIWPYESNMTEEDS---YISTLLCGIE 133
H + + I + V + +WL R + ++ E + + +LL GI
Sbjct: 65 HLYEGAMRAIPQLERVTMASWLEGVLTRSAGWWRDGKFGPDVIREVARAVLLESLLGGIT 124
Query: 134 LIHSGVTCFAEA-GGQHVSEMAKAVELLGLRACLVQSTMDCGE---GLPASWAVRTTDDC 189
+ F A ++ +A LG+R +S+M G+ G V D
Sbjct: 125 TVADQHLFFPGATADSYIDATIEAATDLGIRFHAARSSMTLGKSEGGFCDDLFVEPVDRV 184
Query: 190 IQPDXXXXXXXXXXXQKELYAKHHHAAD-GRIRIWFGIRQIMNATDRLLLETRDMAREFK 248
+Q L ++H G +RI G + L MA ++
Sbjct: 185 VQ------------HCLGLIDQYHEPEPFGMVRIALGPCGVPYDKPELFEAFAQMAADYD 232
Query: 249 TGIHMHVAEIPYENQVVMDTRKVDH----GTVTFLDKIEFLQNNLLSAHTVWVNHTEIGL 304
+H H + +D DH FL+K + + + AH V EI
Sbjct: 233 VRLHTHFYQ-------PLDAGMSDHLYGMTPWRFLEKHGWASDRVWLAHAVVPPREEIPE 285
Query: 305 LSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLI 363
+ AGV ++H A +RM G API+E L A I V GT G+ SN+ +++ ++ LA+L
Sbjct: 286 FADAGVAIAHLIAPDLRMGWGLAPIREYLDAGITVGFGTTGSASNDGGNLLGDLRLAALA 345
Query: 364 NKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWP 423
++ A+ L A +LRMAT G+ L D+G LE G+ AD+
Sbjct: 346 HRP----ADPNEPEKWLSARELLRMAT-RGSAECLGRPDLGVLEEGRAADIACWRLDGVD 400
Query: 424 MVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILL 461
V VHD L+ ++ V+ NGQ +++N++ +L
Sbjct: 401 RVGVHDPAIGLIMTGLSDRASLVVVNGQVLVENERPVL 438
>pdb|3E0L|A Chain A, Computationally Designed Ammelide Deaminase
pdb|3E0L|B Chain B, Computationally Designed Ammelide Deaminase
Length = 455
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 84/364 (23%), Positives = 153/364 (42%), Gaps = 55/364 (15%)
Query: 76 QILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTE----EDSYI------ 125
+ +PG V+TH+H SQ G + D+ L+ WL +P E E+ Y
Sbjct: 75 EFFMPGLVDTHIHASQYSFAGSSIDLPLLEWLTKYTFPAEHRFQNIDFAEEVYTRVVRRT 134
Query: 126 ----STLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASW 181
+T C IH+ + +A + G RA + + MD + P
Sbjct: 135 LKNGTTTACYFATIHTDSSLL----------LADITDKFGQRAFVGKVCMDLNDTFPE-- 182
Query: 182 AVRTTDDCIQPDXXXXXXXXXXXQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETR 241
TT++ I+ E+ K++ + G+ + + + +TR
Sbjct: 183 YKETTEESIKETERFV--------SEMLQKNYSRVKPIVTPGNGVSETLMGELGNIAKTR 234
Query: 242 DMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTE 301
D+ I H++E E + V + + DK L N + AH +++ E
Sbjct: 235 DLH------IQSHISENRDEVEAVKNLYPSYKNYTSVYDKNNLLTNKTVMAHGCYLSAEE 288
Query: 302 IGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTD--GAPSNNRMSIVDEMY 358
+ + G ++HCP S + + GF + E+L ++ + LGTD G S + + +
Sbjct: 289 LNVFHERGASIAHCPNSNLSLSSGFLNVLEVLKHEVKIGLGTDVAGGYSYSMLDAIRRAV 348
Query: 359 LAS---LINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMV 415
+ S LINK E +L + V R+AT+ G++++ D +IG+ E GK+ D +
Sbjct: 349 MVSNILLINKVNE---------KSLTLKEVFRLATLGGSQALGLDGEIGNFEVGKEFDAI 399
Query: 416 VVDP 419
+++P
Sbjct: 400 LINP 403
>pdb|2I9U|A Chain A, Crystal Structure Of Guanine Deaminase From C.
Acetobutylicum With Bound Guanine In The Active Site
pdb|2I9U|B Chain B, Crystal Structure Of Guanine Deaminase From C.
Acetobutylicum With Bound Guanine In The Active Site
Length = 439
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 93/443 (20%), Positives = 179/443 (40%), Gaps = 38/443 (8%)
Query: 25 NAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVN 84
N + + + ++ + V+ +I ++ S+++ ++ + IID ++ I++PG +
Sbjct: 16 NLIFTKTSDKFTIMKDSYIVVIDGKIASV--SSNLPDKYK--GNPIIDFRNNIIIPGMND 71
Query: 85 THVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGI-ELIHSGVTCFA 143
H H SQ GI D +L+ WL++ +P E+ D T I +LI +G T A
Sbjct: 72 LHAHASQYKNLGIGMDKELLPWLNNYTFPEEAKFLNVDYAKKTYGRLIKDLIKNGTTRVA 131
Query: 144 EAGGQHVSEMAKAVELL---GLRACLVQSTMD--CGEGLPASWAVRTTDDCIQPDXXXXX 198
H + +L G+ A + + MD C + L ++ D
Sbjct: 132 LFATLHKDSTIELFNMLIKSGIGAYVGKVNMDYNCPDYLTENYITSLND----------- 180
Query: 199 XXXXXXQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEI 258
+E+ K+ ++ ++ R + + ++ L+ ++ +++ + H++E
Sbjct: 181 ------TEEIILKYKDKSN-IVKPIITPRFVPSCSNELMDGLGKLSYKYRLPVQSHLSEN 233
Query: 259 PYENQVVMDTRKVDHGTVTFLDKIEFLQNN-LLSAHTVWVNHTEIGLLSRAGVKVSHCPA 317
E VV K + DK N L AH + + EI L+ R V + HCP
Sbjct: 234 LDEIAVVKSLHKKSNFYGEVYDKFGLFGNTPTLMAHCIHSSKEEINLIKRNNVTIVHCPT 293
Query: 318 SAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTD 376
S + G P+++ L+ I V LG+D + + S+ +A I + +
Sbjct: 294 SNFNLGSGMMPVRKYLNLGINVVLGSD-ISAGHTCSLFK--VIAYAIQNSKIKWQESGKK 350
Query: 377 PAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVV-DPFSWPM-VPVHDRITSL 434
L MAT G + +GS E G D +V+ D +P + +R+
Sbjct: 351 DMFLSTSEAFYMATKKGGS---FFGKVGSFEEGYDFDALVINDSNLYPEDYDLTERLERF 407
Query: 435 VYCMRTENVVSVMCNGQWVMKNK 457
+Y N++ G + K
Sbjct: 408 IYLGDDRNIMKRYVCGNEIFGPK 430
>pdb|2OOD|A Chain A, Crystal Structure Of Guanine Deaminase From Bradyrhizobium
Japonicum
Length = 475
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 90/404 (22%), Positives = 159/404 (39%), Gaps = 46/404 (11%)
Query: 38 FRNGGVFVVQDR-IKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96
F G+ VV D IKA G I + +I ++ +I++PGF++ H+H Q G
Sbjct: 32 FHQDGLXVVTDGVIKAFGPYEKIAAAHPGV--EITHIKDRIIVPGFIDGHIHLPQTRVLG 89
Query: 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIE-LIHSGVT---CFAEAGGQHVSE 152
+ L+ WL I+P E + + + ++ L+ +G T F + E
Sbjct: 90 AYGE-QLLPWLQKSIYPEEIKYKDRNYAREGVKRFLDALLAAGTTTCQAFTSSSPVATEE 148
Query: 153 MAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDXXXXXXXXXXXQKELYAKH 212
+ + R + +D PA + + T ++ + K L A++
Sbjct: 149 LFEEASRRNXRVIAGLTGID--RNAPAEF-IDTPENFYR------------DSKRLIAQY 193
Query: 213 HHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTG-IHMHVAEIPYENQVVMDTRKV 271
H GR R A+ LL + + E ++ H++E P E V+
Sbjct: 194 HDK--GRNLYAITPRFAFGASPELLKACQRLKHEHPDCWVNTHISENPAECSGVLVEHPD 251
Query: 272 DHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRMLGFAPIKEM 331
+ +K + + H V++++ E S+ G V CP S + LG +
Sbjct: 252 CQDYLGVYEKFDLVGPKFSGGHGVYLSNNEFRRXSKKGAAVVFCPCSNL-FLGSGLFRLG 310
Query: 332 LHAD----ICVSLGTD--GAPSNNRMSIVDEMYLASLINKGREVFANGTTDPA------- 378
D + S GTD G + +S++D+ Y N +G+ DP+
Sbjct: 311 RATDPEHRVKXSFGTDVGGGNRFSXISVLDDAYKVGXCNN---TLLDGSIDPSRKDLAEA 367
Query: 379 ---ALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDP 419
L T+ GA+ + D+ +G+ E GK+AD V +DP
Sbjct: 368 ERNKLSPYRGFWSVTLGGAEGLYIDDKLGNFEPGKEADFVALDP 411
>pdb|3V7P|A Chain A, Crystal Structure Of Amidohydrolase Nis_0429 (Target
Efi-500396) From Nitratiruptor Sp. Sb155-2
Length = 427
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 80/385 (20%), Positives = 153/385 (39%), Gaps = 55/385 (14%)
Query: 49 RIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLH 108
+I+AI ++++++ A + ++ +LLPGF N H+H K D + WL+
Sbjct: 26 KIEAIDTVENLIKKYPNAA--VEHDENSLLLPGFANPHLHLEFSANKATLQYGDFIPWLY 83
Query: 109 DRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQ 168
I E + LC + ++ + G + ++ E L+AC+
Sbjct: 84 SVIRHREDLLP---------LCDGACLEQTLSSIIQTGTTAIGAISSYGE--DLQACI-- 130
Query: 169 STMDCGEGLPASWAVRTTDDCIQPDXXXXXXXXXXXQKELYAKHHHAADGRIRIWFGIRQ 228
++ V ++ I + + + H + R + I
Sbjct: 131 ---------DSALKVVYFNEVIGSNAATADVMYASFLERFHQSKKHENE-RFKAAVAIHS 180
Query: 229 IMNATDRLLLETRDMAREFKTGIHMHVAEIPYE---------------NQVVMDTRKVDH 273
+ L D+A+++ + + +H E E + + TR V+
Sbjct: 181 PYSVHYILAKRALDIAKKYGSLVSVHFMESRAEREWLDKGSGEFAKFFKEFLNQTRPVN- 239
Query: 274 GTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRMLGFAPIKEMLH 333
T +FL+ F + + L H VW N EI ++ + HCP S R+LG +
Sbjct: 240 DTKSFLEL--FKELHTLFVHMVWANEEEIQTIASYNAHIIHCPISN-RLLGNGVLDLEKI 296
Query: 334 ADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATING 393
I ++ TDG SN +++ +E+ A ++ +E TT E ++R AT G
Sbjct: 297 KSIPYAIATDGLSSNYSLNMYEELKAALFVHPNKE----ATT----FAKELIIR-ATKAG 347
Query: 394 AKSVLWDNDIGSLEAGKKADMVVVD 418
++ ++ G + GK ADM ++D
Sbjct: 348 YDALGFEG--GEIAVGKDADMQLID 370
>pdb|2BB0|A Chain A, Structure Of Imidazolonepropionase From Bacillus Subtilis
pdb|2BB0|B Chain B, Structure Of Imidazolonepropionase From Bacillus Subtilis
pdb|2G3F|A Chain A, Crystal Structure Of Imidazolonepropionase Complexed With
Imidazole-4- Acetic Acid Sodium Salt, A Substrate
Homologue
pdb|2G3F|B Chain B, Crystal Structure Of Imidazolonepropionase Complexed With
Imidazole-4- Acetic Acid Sodium Salt, A Substrate
Homologue
Length = 421
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 19/156 (12%)
Query: 293 HTVWVNHTEIGLLSRAGVKVSHCPASAMRMLG---FAPIKEMLHADICVSLGTDGAP-SN 348
H V + I L+ AG P + LG +A + M+ +CVSL TD P S+
Sbjct: 272 HLVGTSDEGIKKLAEAGTIAVLLPGTTF-YLGKSTYARARAMIDEGVCVSLATDFNPGSS 330
Query: 349 NRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEA 408
+I M +A+L K + AE + T+N A ++ + G L+A
Sbjct: 331 PTENIQLIMSIAALHLK--------------MTAEEIWHAVTVNAAYAIGKGEEAGQLKA 376
Query: 409 GKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVV 444
G+ AD+V+ ++ +P H + + M+ +V
Sbjct: 377 GRSADLVIWQAPNYMYIPYHYGVNHVHQVMKNGTIV 412
>pdb|2GOK|A Chain A, Crystal Structure Of The Imidazolonepropionase From
Agrobacterium Tumefaciens At 1.87 A Resolution
pdb|2GOK|B Chain B, Crystal Structure Of The Imidazolonepropionase From
Agrobacterium Tumefaciens At 1.87 A Resolution
Length = 429
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 23/154 (14%)
Query: 288 NLLSA-HTVWVNHTEIGLLSRAGVKVSHCPAS--AMRMLGFAPIKEMLHADICVSLGTDG 344
N LSA H +++ T L++AG P + A+R P++ + A ++L TD
Sbjct: 273 NALSADHLEYLDETGAKALAKAGTVAVLLPGAFYALREKQLPPVQALRDAGAEIALATDC 332
Query: 345 APSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIG 404
P + ++ L +N G +F + E L T N AK++ + G
Sbjct: 333 NPGTSPLT-----SLLLTMNMGATLFR--------MTVEECLTATTRNAAKALGLLAETG 379
Query: 405 SLEAGKKADMVVVD---P----FSWPMVPVHDRI 431
+LEAGK AD + D P + P+H RI
Sbjct: 380 TLEAGKSADFAIWDIERPAELVYRIGFNPLHARI 413
>pdb|2PUZ|A Chain A, Crystal Structure Of Imidazolonepropionase From
Agrobacterium Tumefaciens With Bound Product
N-Formimino-L-Glutamate
pdb|2PUZ|B Chain B, Crystal Structure Of Imidazolonepropionase From
Agrobacterium Tumefaciens With Bound Product
N-Formimino-L-Glutamate
Length = 419
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 23/154 (14%)
Query: 288 NLLSA-HTVWVNHTEIGLLSRAGVKVSHCPAS--AMRMLGFAPIKEMLHADICVSLGTDG 344
N LSA H +++ T L++AG P + A+R P++ + A ++L TD
Sbjct: 271 NALSADHLEYLDETGAKALAKAGTVAVLLPGAFYALREKQLPPVQALRDAGAEIALATDC 330
Query: 345 APSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIG 404
P + ++ L +N G +F + E L T N AK++ + G
Sbjct: 331 NPGTSPLT-----SLLLTMNMGATLFR--------MTVEECLTATTRNAAKALGLLAETG 377
Query: 405 SLEAGKKADMVVVD---P----FSWPMVPVHDRI 431
+LEAGK AD + D P + P+H RI
Sbjct: 378 TLEAGKSADFAIWDIERPAELVYRIGFNPLHARI 411
>pdb|2IMR|A Chain A, Crystal Structure Of Amidohydrolase Dr_0824 From
Deinococcus Radiodurans
Length = 420
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 1/105 (0%)
Query: 263 QVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM 322
+V+ D V +LD++ L H V V +I ++RAG V CP S +
Sbjct: 273 EVIGREPGPDLTPVRYLDELGVLAARPTLVHMVNVTPDDIARVARAGCAVVTCPRSNHHL 332
Query: 323 -LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKG 366
G A + V+LGTD S +++ +E+ A + G
Sbjct: 333 ECGTFDWPAFAAAGVEVALGTDSVASGETLNVREEVTFARQLYPG 377
>pdb|2P9B|A Chain A, Crystal Structure Of Putative Prolidase From
Bifidobacterium Longum
Length = 458
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 23 LHNAVIVTMDKESRVFRNGGVFVVQD-RIKAIGQSADILQQFSQMADQIIDLQSQILLPG 81
L +A IVT DK + RN + V D RI+ Q A ++ +D +I+ PG
Sbjct: 16 LAHATIVTGDKAGTILRNXTIVVGADGRIE---QVAPSIETSIPAEYHYLDGTGKIVXPG 72
Query: 82 FVNTHVHTSQQ 92
+N H H Q
Sbjct: 73 LINAHTHLFSQ 83
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 381 PAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVD 418
PAE L AT A + D + GSLE GK AD++V++
Sbjct: 371 PAE-ALHAATAVNASILGVDAETGSLEVGKSADLLVLN 407
>pdb|3ICJ|A Chain A, Crystal Structure Of An Uncharacterized Metal-Dependent
Hydrolase From Pyrococcus Furiosus
Length = 534
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%)
Query: 35 SRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQ 91
S V + G+ + +R+ G S+ L+ +IIDL+ + ++P F ++H+H +
Sbjct: 50 SPVKKVSGLVISNERVLYAGDSSTALRIAELAGGEIIDLKGKFVMPAFFDSHLHLDE 106
>pdb|3OOQ|A Chain A, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|B Chain B, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|C Chain C, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|D Chain D, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|E Chain E, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|F Chain F, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|G Chain G, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|H Chain H, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|I Chain I, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|J Chain J, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
Length = 396
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 383 ETVLRMATINGAKSVLWDNDIGSLEAGKKADMVV 416
E +L++ T+N AK + ++ IGS+E GK AD+VV
Sbjct: 330 EDLLKILTVNPAKILGLEDRIGSIEPGKDADLVV 363
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
++ NA + + SR F+ G V V +++ +G++ + +I+DL + L P
Sbjct: 7 ILFKNATVFPIT--SRPFK-GDVLVSNGKVEKVGENIE------DPDAEIVDLTGKFLFP 57
Query: 81 GFVNTHVH 88
GFV+ H H
Sbjct: 58 GFVDAHSH 65
>pdb|3MPG|A Chain A, Dihydroorotase From Bacillus Anthracis
pdb|3MPG|B Chain B, Dihydroorotase From Bacillus Anthracis
Length = 428
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 33 KESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVH 88
K R G V D + G+ A + + + ++ID+ +++ PG V+ HVH
Sbjct: 6 KNGRYMNEEGKIVATDLLVQDGKIAKVAENITADNAEVIDVNGKLIAPGLVDVHVH 61
>pdb|1RJP|A Chain A, Crystal Structure Of D-Aminoacylase In Complex With 100mm
Cucl2
pdb|1RK6|A Chain A, The Enzyme In Complex With 50mm Cdcl2
pdb|1V51|A Chain A, The Functional Role Of The Binuclear Metal Center In D-
Aminoacylase. One-Metal Activation And Second-Metal
Attenuation
Length = 496
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 57/149 (38%), Gaps = 25/149 (16%)
Query: 321 RMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAAL 380
R+L F P +G+DG P DE L V + + D
Sbjct: 367 RILAFGPTM----------IGSDGLPH-------DERPHPRLWGTFPRVLGHYSRDLGLF 409
Query: 381 PAET-VLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMR 439
P ET V +M + AK L + G ++ G AD+VV DP + V D T R
Sbjct: 410 PLETAVWKMTGLTAAKFGLAER--GQVQPGYYADLVVFDPAT-----VADSATFEHPTER 462
Query: 440 TENVVSVMCNGQWVMKNKKILLLMRGRLF 468
+ SV NG V +++ GR+
Sbjct: 463 AAGIHSVYVNGAAVWEDQSFTGQHAGRVL 491
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 43 VFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAK 95
V V DRI A+G + + A + ID+ +++ PGF+++H H L K
Sbjct: 43 VGVRGDRIAAVGDLS------ASSARRRIDVAGKVVSPGFIDSHTHDDNYLLK 89
>pdb|1M7J|A Chain A, Crystal Structure Of D-Aminoacylase Defines A Novel Subset
Of Amidohydrolases
Length = 484
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 57/149 (38%), Gaps = 25/149 (16%)
Query: 321 RMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAAL 380
R+L F P +G+DG P DE L V + + D
Sbjct: 355 RILAFGPTM----------IGSDGLPH-------DERPHPRLWGTFPRVLGHYSRDLGLF 397
Query: 381 PAET-VLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMR 439
P ET V +M + AK L + G ++ G AD+VV DP + V D T R
Sbjct: 398 PLETAVWKMTGLTAAKFGLAER--GQVQPGYYADLVVFDPAT-----VADSATFEHPTER 450
Query: 440 TENVVSVMCNGQWVMKNKKILLLMRGRLF 468
+ SV NG V +++ GR+
Sbjct: 451 AAGIHSVYVNGAAVWEDQSFTGQHAGRVL 479
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 43 VFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAK 95
V V DRI A+G + + A + ID+ +++ PGF+++H H L K
Sbjct: 31 VGVRGDRIAAVGDLS------ASSARRRIDVAGKVVSPGFIDSHTHDDNYLLK 77
>pdb|1GKP|A Chain A, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|B Chain B, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|C Chain C, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|D Chain D, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|E Chain E, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|F Chain F, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKQ|A Chain A, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|B Chain B, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|C Chain C, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|D Chain D, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
Length = 458
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+++ N I+T D + ++ + I IGQ+ + + ++ID + + P
Sbjct: 2 LLIKNGEIITADSRYKA----DIYAEGETITRIGQNLE-----APPGTEVIDATGKYVFP 52
Query: 81 GFVNTHVHTSQQLAKGIADDV 101
GF++ HVH A D
Sbjct: 53 GFIDPHVHIYLPFMATFAKDT 73
>pdb|1V4Y|A Chain A, The Functional Role Of The Binuclear Metal Center In D-
Aminoacylase. One-Metal Activation And Second-Metal
Attenuation
Length = 496
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 57/149 (38%), Gaps = 25/149 (16%)
Query: 321 RMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAAL 380
R+L F P +G+DG P DE L V + + D
Sbjct: 367 RILAFGPTM----------IGSDGLPH-------DERPHPRLWGTFPRVLGHYSRDLGLF 409
Query: 381 PAET-VLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMR 439
P ET V +M + AK L + G ++ G AD+VV DP + V D T R
Sbjct: 410 PLETAVWKMTGLTAAKFGLAER--GQVQPGYYADLVVFDPAT-----VADSATFEHPTER 462
Query: 440 TENVVSVMCNGQWVMKNKKILLLMRGRLF 468
+ SV NG V +++ GR+
Sbjct: 463 AAGIHSVYVNGAAVWEDQSFTGQHAGRVL 491
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 43 VFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAK 95
V V DRI A+G + + A + ID+ +++ PGF+++H H L K
Sbjct: 43 VGVRGDRIAAVGDLS------ASSARRRIDVAGKVVSPGFIDSHTHDDNYLLK 89
>pdb|1YBQ|A Chain A, Crystal Structure Of Escherichia Coli Isoaspartyl
Dipeptidase Mutant D285n Complexed With
Beta-Aspartylhistidine
Length = 390
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
Query: 43 VFVVQDRIKAIGQS--ADILQQFSQMADQIIDLQSQILLPGFVNTHVH 88
V V +I A+ + +DI+ + ++DL QIL PGF++ HVH
Sbjct: 28 VLVANGKIIAVASNIPSDIVPNCT-----VVDLSGQILCPGFIDQHVH 70
>pdb|1YBQ|B Chain B, Crystal Structure Of Escherichia Coli Isoaspartyl
Dipeptidase Mutant D285n Complexed With
Beta-Aspartylhistidine
Length = 390
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
Query: 43 VFVVQDRIKAIGQS--ADILQQFSQMADQIIDLQSQILLPGFVNTHVH 88
V V +I A+ + +DI+ + ++DL QIL PGF++ HVH
Sbjct: 28 VLVANGKIIAVASNIPSDIVPNCT-----VVDLSGQILCPGFIDQHVH 70
>pdb|1ONW|A Chain A, Crystal Structure Of Isoaspartyl Dipeptidase From E.
Coli
pdb|1ONW|B Chain B, Crystal Structure Of Isoaspartyl Dipeptidase From E.
Coli
pdb|1ONX|A Chain A, Crystal Structure Of Isoaspartyl Dipeptidase From
Escherichia Coli Complexed With Aspartate
pdb|1ONX|B Chain B, Crystal Structure Of Isoaspartyl Dipeptidase From
Escherichia Coli Complexed With Aspartate
pdb|1PO9|A Chain A, Crytsal Structure Of Isoaspartyl Dipeptidase
pdb|1PO9|B Chain B, Crytsal Structure Of Isoaspartyl Dipeptidase
pdb|1POJ|A Chain A, Isoaspartyl Dipeptidase With Bound Inhibitor
pdb|1POJ|B Chain B, Isoaspartyl Dipeptidase With Bound Inhibitor
pdb|1POK|B Chain B, Crystal Structure Of Isoaspartyl Dipeptidase
pdb|1POK|A Chain A, Crystal Structure Of Isoaspartyl Dipeptidase
Length = 390
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
Query: 43 VFVVQDRIKAIGQS--ADILQQFSQMADQIIDLQSQILLPGFVNTHVH 88
V V +I A+ + +DI+ + ++DL QIL PGF++ HVH
Sbjct: 28 VLVANGKIIAVASNIPSDIVPNCT-----VVDLSGQILCPGFIDQHVH 70
>pdb|2AQV|A Chain A, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant Y137f
pdb|2AQV|B Chain B, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant Y137f
Length = 390
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
Query: 43 VFVVQDRIKAIGQS--ADILQQFSQMADQIIDLQSQILLPGFVNTHVH 88
V V +I A+ + +DI+ + ++DL QIL PGF++ HVH
Sbjct: 28 VLVANGKIIAVASNIPSDIVPNCT-----VVDLSGQILCPGFIDQHVH 70
>pdb|2AQO|A Chain A, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant E77q
pdb|2AQO|B Chain B, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant E77q
Length = 390
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
Query: 43 VFVVQDRIKAIGQS--ADILQQFSQMADQIIDLQSQILLPGFVNTHVH 88
V V +I A+ + +DI+ + ++DL QIL PGF++ HVH
Sbjct: 28 VLVANGKIIAVASNIPSDIVPNCT-----VVDLSGQILCPGFIDQHVH 70
>pdb|1RJQ|A Chain A, The Crystal Structure Of The D-Aminoacylase Mutant D366a
pdb|1RJR|A Chain A, The Crystal Structure Of The D-Aminoacylase D366a Mutant
In Complex With 100mm Zncl2
pdb|1RK5|A Chain A, The D-Aminoacylase Mutant D366a In Complex With 100mm
Cucl2
Length = 496
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 43 VFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAK 95
V V DRI A+G + + A + ID+ +++ PGF+++H H L K
Sbjct: 43 VGVRGDRIAAVGDLS------ASSARRRIDVAGKVVSPGFIDSHTHDDNYLLK 89
>pdb|3MTW|A Chain A, Crystal Structure Of L-Lysine, L-Arginine
Carboxypeptidase Cc2672 From Caulobacter Crescentus
Cb15 Complexed With N-Methyl Phosphonate Derivative Of
L-Arginine
Length = 403
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 43 VFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVH 88
V V RI +IG+ D + + +DL LLPG ++ HVH
Sbjct: 25 VIVTDGRITSIGKKGDAVPAGATA----VDLPGVTLLPGLIDMHVH 66
>pdb|2FTY|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FVK|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVM|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
Length = 559
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+I+ N +I T S ++ + V +++ I S D + ++ID + + P
Sbjct: 5 LIIKNGIICTA---SDIYA-AEIAVNNGKVQLIAASID-----PSLGSEVIDAEGAFITP 55
Query: 81 GFVNTHVHTSQQLAKGIADDVDLM 104
G ++ HVH + L K + D VD M
Sbjct: 56 GGIDAHVHVDEPL-KLLGDVVDTM 78
>pdb|2VUN|A Chain A, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
pdb|2VUN|B Chain B, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
pdb|2VUN|C Chain C, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
pdb|2VUN|D Chain D, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
Length = 386
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 50/130 (38%), Gaps = 30/130 (23%)
Query: 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILL 79
T+I + IV+ D +S V + + V I AIG ++++ IID +
Sbjct: 4 TIIKNIGKIVSGDIKSPVLQADTIVVEDGLIAAIGGE-ELMKDAGDA--TIIDAAGSTVT 60
Query: 80 PGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGV 139
PG ++THVH S P + M +IS+ L H GV
Sbjct: 61 PGLLDTHVHVSGG-----------------DYAPRQKTM----DFISSAL------HGGV 93
Query: 140 TCFAEAGGQH 149
T AG H
Sbjct: 94 TTMISAGSPH 103
>pdb|1K1D|A Chain A, Crystal Structure Of D-Hydantoinase
pdb|1K1D|B Chain B, Crystal Structure Of D-Hydantoinase
pdb|1K1D|C Chain C, Crystal Structure Of D-Hydantoinase
pdb|1K1D|D Chain D, Crystal Structure Of D-Hydantoinase
pdb|1K1D|E Chain E, Crystal Structure Of D-Hydantoinase
pdb|1K1D|F Chain F, Crystal Structure Of D-Hydantoinase
pdb|1K1D|G Chain G, Crystal Structure Of D-Hydantoinase
pdb|1K1D|H Chain H, Crystal Structure Of D-Hydantoinase
Length = 460
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 35 SRVFRNGGVFVVQDRIKA-----IGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHT 89
+++ +NG + D +A G+ A I Q + ++ID + + PG ++ H H
Sbjct: 2 TKIIKNGTIVTATDTYEAHLLIKDGKIAMIGQNLEEKGAEVIDAKGCYVFPGGIDPHTHL 61
Query: 90 SQQLAKGIADD 100
L + D
Sbjct: 62 DMPLGGTVTKD 72
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 404 GSLEAGKKADMVVVDPFSWPMVPVHDRITSLVY----CMR-TENVVSVMCNGQWVMKNKK 458
G++ G AD+V+ DP ++ ++ Y M+ T VSV+C G++V+++K+
Sbjct: 383 GTIVVGSDADLVIFDPNIERVISAETHHMAVDYNAFEGMKVTGEPVSVLCRGEFVVRDKQ 442
Query: 459 IL 460
+
Sbjct: 443 FV 444
>pdb|2P53|A Chain A, Crystal Structure Of N-acetyl-d-glucosamine-6-phosphate
Deacetylase D273n Mutant Complexed With N-acetyl
Phosphonamidate-d-glucosamine-6- Phosphate
pdb|2P53|B Chain B, Crystal Structure Of N-acetyl-d-glucosamine-6-phosphate
Deacetylase D273n Mutant Complexed With N-acetyl
Phosphonamidate-d-glucosamine-6- Phosphate
Length = 382
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 383 ETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDP 419
+ VLRMAT+ A+++ + +G+L AGK A++ P
Sbjct: 329 DEVLRMATLYPARAIGVEKRLGTLAAGKVANLTAFTP 365
>pdb|1YMY|A Chain A, Crystal Structure Of The N-Acetylglucosamine-6-Phosphate
Deacetylase From Escherichia Coli K12
pdb|1YMY|B Chain B, Crystal Structure Of The N-Acetylglucosamine-6-Phosphate
Deacetylase From Escherichia Coli K12
pdb|1YRR|A Chain A, Crystal Structure Of The N-Acetylglucosamine-6-Phosphate
Deacetylase From Escherichia Coli K12 At 2.0 A
Resolution
pdb|1YRR|B Chain B, Crystal Structure Of The N-Acetylglucosamine-6-Phosphate
Deacetylase From Escherichia Coli K12 At 2.0 A
Resolution
pdb|2P50|A Chain A, Crystal Structure Of N-Acetyl-D-Glucosamine-6-Phosphate
Deacetylase Liganded With Zn
pdb|2P50|B Chain B, Crystal Structure Of N-Acetyl-D-Glucosamine-6-Phosphate
Deacetylase Liganded With Zn
pdb|2P50|C Chain C, Crystal Structure Of N-Acetyl-D-Glucosamine-6-Phosphate
Deacetylase Liganded With Zn
pdb|2P50|D Chain D, Crystal Structure Of N-Acetyl-D-Glucosamine-6-Phosphate
Deacetylase Liganded With Zn
Length = 382
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 383 ETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDP 419
+ VLRMAT+ A+++ + +G+L AGK A++ P
Sbjct: 329 DEVLRMATLYPARAIGVEKRLGTLAAGKVANLTAFTP 365
>pdb|2FTW|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Dictyostelium Discoideum
Length = 521
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILL 79
T+++ N +V D R F++ V V IK I ++ + + +++D ++LL
Sbjct: 9 TILIKNGTVVNDD---RYFKSD-VLVENGIIKEISKNIEPKEGI-----KVVDATDKLLL 59
Query: 80 PGFVNTHVHTSQQLAKGIA-DDVDLMT 105
PG ++TH H ++ DD D+ T
Sbjct: 60 PGGIDTHTHFQLPFMGTVSVDDFDIGT 86
>pdb|3NQB|A Chain A, Crystal Structure Of Adenine Deaminase From Agrobacterium
Tumefaciens (Str. C 58)
pdb|3NQB|B Chain B, Crystal Structure Of Adenine Deaminase From Agrobacterium
Tumefaciens (Str. C 58)
pdb|3T81|A Chain A, Crystal Structure Of Diiron Adenine Deaminase
pdb|3T81|B Chain B, Crystal Structure Of Diiron Adenine Deaminase
pdb|3T8L|A Chain A, Crystal Structure Of Adenine Deaminase With MnFE
pdb|3T8L|B Chain B, Crystal Structure Of Adenine Deaminase With MnFE
Length = 608
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 379 ALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVD 418
L E LR AT+N A+ L +D+G + AG++AD+VV +
Sbjct: 316 GLKPEWALRAATLNAAQR-LGRSDLGLIAAGRRADIVVFE 354
>pdb|2QS8|A Chain A, Crystal Structure Of A Xaa-Pro Dipeptidase With Bound
Methionine In The Active Site
pdb|2QS8|B Chain B, Crystal Structure Of A Xaa-Pro Dipeptidase With Bound
Methionine In The Active Site
Length = 418
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 381 PAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVV 417
PA ++ AT AK + ++ +GS+E+GK AD++ V
Sbjct: 350 PAXKAIQSATXETAKLLRIEDKLGSIESGKLADLIAV 386
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 57 ADILQQF--SQMADQIIDLQSQILLPGFVNTHVHTSQQ 92
+DI + F S + IDL+ +LPG + HVH Q+
Sbjct: 38 SDIKKGFISSNDFEDYIDLRDHTVLPGLXDXHVHFGQE 75
>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1R|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
Length = 431
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 83 VNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYES--NMTEEDSYISTLLCG 131
+N H+ TS L + D + L+DR ES N E+ I+ +LCG
Sbjct: 268 INEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCG 318
>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
pdb|3LB8|B Chain B, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
Length = 436
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 83 VNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYES--NMTEEDSYISTLLCG 131
+N H+ TS L + D + L+DR ES N E+ I+ +LCG
Sbjct: 267 INEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCG 317
>pdb|3MDU|A Chain A, The Structure Of N-Formimino-L-Glutamate Iminohydrolase
From Pseudomonas Aeruginosa Complexed With
N-Guanidino-L-Glutamate
pdb|3MDW|A Chain A, The Structure Of N-Formimino-L-Glutamate Iminohydrolase
From Pseudomonas Aeruginosa Complexed With
N-Formimino-L-Aspartate
pdb|3MDW|B Chain B, The Structure Of N-Formimino-L-Glutamate Iminohydrolase
From Pseudomonas Aeruginosa Complexed With
N-Formimino-L-Aspartate
pdb|3MDW|C Chain C, The Structure Of N-Formimino-L-Glutamate Iminohydrolase
From Pseudomonas Aeruginosa Complexed With
N-Formimino-L-Aspartate
pdb|3MDW|D Chain D, The Structure Of N-Formimino-L-Glutamate Iminohydrolase
From Pseudomonas Aeruginosa Complexed With
N-Formimino-L-Aspartate
Length = 453
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 74/170 (43%), Gaps = 9/170 (5%)
Query: 293 HTVWVNHTEIGLLSRAGVKVSHCPASAMRML-GFAPIKEMLHADICVSLGTDGAPSNNRM 351
H + E+ ++R+G C ++ + G P + L + +G+D S+ +
Sbjct: 269 HATHADPAEVAAMARSGAVAGLCLSTEANLGDGIFPATDFLAQGGRLGIGSD---SHVSL 325
Query: 352 SIVDEMYLASLINKGREVFANG-TTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGK 410
S+V+E+ + R+ N D + T+ A GA+++ IGSL G+
Sbjct: 326 SVVEELRWLEYGQRLRDRKRNRLYRDDQPMIGRTLYDAALAGGAQALG--QPIGSLAVGR 383
Query: 411 KADMVVVDPFSWPMVPVHDR--ITSLVYCMRTENVVSVMCNGQWVMKNKK 458
+AD++V+D + + ++ V VM G+WV+++ +
Sbjct: 384 RADLLVLDGNDPYLASAEGDALLNRWLFAGGDRQVRDVMVAGRWVVRDGR 433
>pdb|3GGM|A Chain A, Crystal Structure Of Bt9727_2919 From Bacillus
Thuringiensis Subsp. Northeast Structural Genomics
Target Bur228b
pdb|3GGM|B Chain B, Crystal Structure Of Bt9727_2919 From Bacillus
Thuringiensis Subsp. Northeast Structural Genomics
Target Bur228b
pdb|3GGM|C Chain C, Crystal Structure Of Bt9727_2919 From Bacillus
Thuringiensis Subsp. Northeast Structural Genomics
Target Bur228b
pdb|3GGM|D Chain D, Crystal Structure Of Bt9727_2919 From Bacillus
Thuringiensis Subsp. Northeast Structural Genomics
Target Bur228b
Length = 81
Score = 28.9 bits (63), Expect = 6.5, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
MIL+N I T+D + + I A+G D L + + IDL+ + +P
Sbjct: 6 MILYNGKITTLDPSQP--EVSAIAITDGLITAVG--GDELLNSATEKTKKIDLKRKRAIP 61
Query: 81 GFVNTHVHTSQQL 93
G ++H+H + L
Sbjct: 62 GLNDSHIHVIRGL 74
>pdb|3EGJ|A Chain A, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae.
pdb|3EGJ|B Chain B, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae.
pdb|3IV8|A Chain A, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae Complexed With Fructose 6-Phosphate
pdb|3IV8|B Chain B, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae Complexed With Fructose 6-Phosphate
pdb|3IV8|C Chain C, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae Complexed With Fructose 6-Phosphate
pdb|3IV8|D Chain D, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae Complexed With Fructose 6-Phosphate
Length = 381
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 20/79 (25%)
Query: 374 TTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITS 433
T + + + LRMAT+ AK++ D +G ++ G A++ V D
Sbjct: 320 TVEHVGIALDEALRMATLYPAKAIGVDEKLGRIKKGMIANLTVFD--------------- 364
Query: 434 LVYCMRTENVVSVMCNGQW 452
R NV + + NGQ+
Sbjct: 365 -----RDFNVKATVVNGQY 378
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,872,425
Number of Sequences: 62578
Number of extensions: 491457
Number of successful extensions: 1487
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1375
Number of HSP's gapped (non-prelim): 88
length of query: 478
length of database: 14,973,337
effective HSP length: 103
effective length of query: 375
effective length of database: 8,527,803
effective search space: 3197926125
effective search space used: 3197926125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)