Query 011768
Match_columns 478
No_of_seqs 133 out of 513
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 05:01:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011768.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011768hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05341 homogentisate 1,2-dio 100.0 3E-177 7E-182 1361.4 37.0 431 19-457 7-437 (438)
2 PLN02658 homogentisate 1,2-dio 100.0 2E-176 4E-181 1355.2 36.5 428 26-457 1-433 (435)
3 TIGR01015 hmgA homogentisate 1 100.0 8E-176 2E-180 1348.3 36.2 425 24-453 2-429 (429)
4 KOG1417 Homogentisate 1,2-diox 100.0 1E-168 2E-173 1241.4 28.3 431 21-456 4-438 (446)
5 PF04209 HgmA: homogentisate 1 100.0 6E-169 1E-173 1301.8 24.9 423 25-453 1-424 (424)
6 COG3508 HmgA Homogentisate 1,2 100.0 4E-158 9E-163 1184.1 30.6 422 24-455 3-424 (427)
7 TIGR03404 bicupin_oxalic bicup 97.5 0.0025 5.5E-08 66.8 14.6 199 169-392 85-309 (367)
8 TIGR03037 anthran_nbaC 3-hydro 97.4 0.00027 5.9E-09 66.5 6.4 57 167-224 44-104 (159)
9 COG0662 {ManC} Mannose-6-phosp 97.4 0.00062 1.3E-08 60.7 7.4 76 148-226 36-111 (127)
10 PF07883 Cupin_2: Cupin domain 97.3 0.00075 1.6E-08 52.4 6.4 56 165-220 13-69 (71)
11 PRK13264 3-hydroxyanthranilate 97.0 0.0028 6E-08 60.7 7.9 56 168-224 51-110 (177)
12 smart00835 Cupin_1 Cupin. This 96.9 0.019 4.1E-07 51.9 12.1 59 165-223 45-110 (146)
13 PRK11171 hypothetical protein; 96.4 0.034 7.4E-07 55.7 11.6 103 112-223 31-136 (266)
14 PF02311 AraC_binding: AraC-li 96.4 0.02 4.3E-07 48.1 8.2 58 167-224 19-77 (136)
15 COG1917 Uncharacterized conser 96.3 0.015 3.3E-07 51.3 7.3 46 167-212 59-105 (131)
16 PF05899 Cupin_3: Protein of u 96.2 0.01 2.3E-07 48.5 5.5 59 150-211 7-66 (74)
17 PF06249 EutQ: Ethanolamine ut 96.1 0.0075 1.6E-07 56.5 4.9 49 165-213 89-137 (152)
18 PRK09943 DNA-binding transcrip 96.1 0.045 9.7E-07 51.4 10.1 58 166-223 123-181 (185)
19 PF03079 ARD: ARD/ARD' family; 95.7 0.023 5.1E-07 53.3 6.2 46 169-214 90-140 (157)
20 COG4766 EutQ Ethanolamine util 95.6 0.03 6.4E-07 52.9 6.4 49 170-219 117-165 (176)
21 PF00190 Cupin_1: Cupin; Inte 95.4 0.1 2.2E-06 47.1 9.0 80 148-229 32-126 (144)
22 TIGR03214 ura-cupin putative a 95.4 0.21 4.6E-06 50.0 12.0 57 167-223 76-133 (260)
23 TIGR03404 bicupin_oxalic bicup 95.0 0.29 6.3E-06 51.6 12.1 72 149-221 244-322 (367)
24 PRK10296 DNA-binding transcrip 94.9 0.12 2.7E-06 50.6 8.6 58 166-223 38-95 (278)
25 PRK15457 ethanolamine utilizat 94.8 0.29 6.2E-06 49.0 10.9 53 166-219 170-222 (233)
26 PF01050 MannoseP_isomer: Mann 94.4 0.39 8.6E-06 44.8 10.1 59 165-224 78-136 (151)
27 PRK04190 glucose-6-phosphate i 94.1 0.16 3.4E-06 49.2 7.2 69 170-241 96-170 (191)
28 TIGR01479 GMP_PMI mannose-1-ph 93.6 0.56 1.2E-05 50.6 11.0 57 166-222 392-449 (468)
29 PRK13290 ectC L-ectoine syntha 92.7 1.1 2.4E-05 40.5 9.9 79 135-221 24-106 (125)
30 COG3450 Predicted enzyme of th 92.4 1.1 2.5E-05 40.4 9.4 69 150-221 45-114 (116)
31 PLN00212 glutelin; Provisional 91.1 1.4 3.1E-05 48.5 10.2 47 343-390 355-411 (493)
32 PRK11171 hypothetical protein; 91.0 1.9 4.1E-05 43.4 10.3 62 167-228 201-263 (266)
33 TIGR02297 HpaA 4-hydroxyphenyl 90.9 0.44 9.5E-06 46.6 5.7 51 171-222 44-94 (287)
34 PRK00924 5-keto-4-deoxyuronate 90.9 1.1 2.4E-05 46.0 8.6 66 165-231 68-136 (276)
35 PF12973 Cupin_7: ChrR Cupin-l 90.8 0.68 1.5E-05 38.7 5.9 48 168-220 41-88 (91)
36 PRK15460 cpsB mannose-1-phosph 90.6 1.7 3.7E-05 47.5 10.2 59 165-224 400-458 (478)
37 PF14525 AraC_binding_2: AraC- 90.5 1.4 3E-05 39.1 8.0 54 170-224 54-107 (172)
38 PF12852 Cupin_6: Cupin 90.1 0.48 1E-05 44.1 4.9 40 171-210 35-76 (186)
39 COG2140 Thermophilic glucose-6 89.5 1.2 2.6E-05 44.0 7.3 57 167-224 99-160 (209)
40 PRK13502 transcriptional activ 89.4 0.84 1.8E-05 44.7 6.3 46 168-213 35-80 (282)
41 PRK10572 DNA-binding transcrip 89.2 1.4 2.9E-05 43.5 7.6 67 130-211 23-89 (290)
42 PF11699 CENP-C_C: Mif2/CENP-C 89.1 3.8 8.3E-05 35.0 9.2 57 165-221 27-84 (85)
43 PRK13500 transcriptional activ 87.6 1.3 2.8E-05 44.8 6.4 45 167-211 64-108 (312)
44 PRK13501 transcriptional activ 87.6 1.2 2.5E-05 44.2 5.9 45 167-211 34-78 (290)
45 COG1791 Uncharacterized conser 87.5 0.99 2.1E-05 43.5 5.0 42 170-215 103-144 (181)
46 COG3837 Uncharacterized conser 86.9 2.2 4.9E-05 40.6 7.0 75 147-223 41-117 (161)
47 PRK13503 transcriptional activ 85.8 1.1 2.5E-05 43.4 4.7 47 167-213 31-77 (278)
48 PRK10371 DNA-binding transcrip 85.7 2.8 6E-05 42.4 7.6 62 149-213 27-88 (302)
49 PF06052 3-HAO: 3-hydroxyanthr 84.4 3.4 7.4E-05 39.1 6.9 56 163-224 54-109 (151)
50 PF04962 KduI: KduI/IolB famil 83.1 2.9 6.2E-05 42.4 6.3 56 168-224 44-108 (261)
51 KOG2107 Uncharacterized conser 82.9 2.4 5.2E-05 40.8 5.3 54 169-222 91-153 (179)
52 PRK09685 DNA-binding transcrip 82.8 3.2 6.8E-05 41.1 6.4 42 172-213 72-113 (302)
53 COG4101 Predicted mannose-6-ph 82.7 6.4 0.00014 36.3 7.7 87 148-236 44-140 (142)
54 TIGR03214 ura-cupin putative a 82.3 14 0.0003 37.1 10.8 77 149-227 178-257 (260)
55 TIGR02451 anti_sig_ChrR anti-s 80.3 3.9 8.5E-05 40.0 5.9 72 150-230 129-201 (215)
56 TIGR02272 gentisate_1_2 gentis 75.2 12 0.00025 39.6 8.0 46 166-211 265-310 (335)
57 KOG2757 Mannose-6-phosphate is 74.6 6.2 0.00013 42.3 5.8 55 165-219 347-402 (411)
58 COG4297 Uncharacterized protei 74.3 4.6 0.0001 38.0 4.3 43 167-209 60-105 (163)
59 TIGR00218 manA mannose-6-phosp 74.2 15 0.00033 37.5 8.4 60 148-210 233-293 (302)
60 PF02041 Auxin_BP: Auxin bindi 73.5 28 0.0006 33.4 9.2 91 132-223 25-127 (167)
61 PF12219 End_tail_spike: Catal 71.9 4.8 0.0001 37.7 3.8 45 129-173 80-125 (160)
62 PRK15186 AraC family transcrip 71.8 7.2 0.00016 40.0 5.5 40 173-212 40-80 (291)
63 COG3257 GlxB Uncharacterized p 70.6 15 0.00033 37.1 7.2 77 129-223 59-136 (264)
64 TIGR03037 anthran_nbaC 3-hydro 68.7 6.9 0.00015 37.3 4.2 63 348-428 39-109 (159)
65 PRK13264 3-hydroxyanthranilate 66.9 8.2 0.00018 37.4 4.4 62 349-428 46-115 (177)
66 PF06560 GPI: Glucose-6-phosph 66.7 20 0.00044 34.8 7.0 45 167-211 79-132 (182)
67 PF09313 DUF1971: Domain of un 66.3 28 0.0006 29.6 7.0 47 174-220 28-81 (82)
68 PLN00212 glutelin; Provisional 66.1 17 0.00037 40.3 7.1 47 165-211 363-415 (493)
69 PRK15185 transcriptional regul 59.8 13 0.00029 38.8 4.7 40 173-212 51-90 (309)
70 PRK04190 glucose-6-phosphate i 54.5 34 0.00074 33.3 6.3 80 311-390 48-138 (191)
71 PF06719 AraC_N: AraC-type tra 52.7 1.1E+02 0.0024 28.1 9.1 69 153-224 7-80 (155)
72 PF02373 JmjC: JmjC domain, hy 52.5 14 0.00029 31.1 2.8 21 190-210 82-102 (114)
73 PLN02288 mannose-6-phosphate i 51.0 34 0.00073 36.9 6.1 59 148-207 332-392 (394)
74 PRK15131 mannose-6-phosphate i 49.6 48 0.001 35.5 7.0 58 149-209 320-378 (389)
75 PF05726 Pirin_C: Pirin C-term 47.8 50 0.0011 28.4 5.7 54 168-223 17-70 (104)
76 PF08007 Cupin_4: Cupin superf 47.6 25 0.00053 36.3 4.3 24 190-213 177-200 (319)
77 COG1482 ManA Phosphomannose is 37.5 30 0.00066 36.3 3.2 35 186-226 155-189 (312)
78 COG1482 ManA Phosphomannose is 35.9 1.4E+02 0.0029 31.6 7.6 60 148-210 240-300 (312)
79 PF04773 FecR: FecR protein; 35.3 2.1E+02 0.0045 23.2 7.3 49 174-222 41-94 (98)
80 PF07385 DUF1498: Protein of u 35.1 2E+02 0.0044 29.1 8.3 68 150-224 120-187 (225)
81 PF05962 HutD: HutD; InterPro 32.6 78 0.0017 30.4 4.9 56 165-223 129-184 (184)
82 PF13621 Cupin_8: Cupin-like d 31.8 44 0.00095 31.5 3.1 22 191-212 211-232 (251)
83 COG3718 IolB Uncharacterized e 30.2 2E+02 0.0043 29.6 7.4 56 169-225 47-112 (270)
84 PF09092 Lyase_N: Lyase, N ter 30.0 20 0.00044 34.7 0.5 53 282-340 111-164 (178)
85 cd00214 Calpain_III Calpain, s 29.8 74 0.0016 29.1 4.1 20 183-202 105-124 (150)
86 KOG3995 3-hydroxyanthranilate 29.2 1E+02 0.0022 31.3 5.1 74 136-223 34-108 (279)
87 PF06865 DUF1255: Protein of u 28.9 2.2E+02 0.0049 25.1 6.6 56 165-222 35-92 (94)
88 KOG4600 Mitochondrial ribosoma 26.5 37 0.00081 31.9 1.5 21 188-208 53-73 (144)
89 KOG4046 RNase MRP and P, subun 26.1 68 0.0015 32.3 3.3 50 178-230 153-204 (224)
90 COG3822 ABC-type sugar transpo 25.9 1.7E+02 0.0037 29.3 5.9 50 173-224 137-186 (225)
91 PRK13855 type IV secretion sys 24.1 1E+02 0.0022 33.3 4.4 49 195-246 216-278 (376)
92 TIGR00062 L27 ribosomal protei 24.0 60 0.0013 28.1 2.2 21 188-208 26-46 (83)
93 PF02237 BPL_C: Biotin protein 23.4 82 0.0018 23.7 2.6 25 176-200 22-47 (48)
94 smart00538 POP4 A domain found 23.0 2.9E+02 0.0063 23.9 6.3 30 197-230 49-79 (92)
95 TIGR00218 manA mannose-6-phosp 23.0 55 0.0012 33.4 2.2 34 186-225 148-181 (302)
96 PF00190 Cupin_1: Cupin; Inte 21.9 19 0.00041 32.4 -1.3 68 343-426 41-124 (144)
97 PRK05435 rpmA 50S ribosomal pr 21.8 69 0.0015 27.7 2.1 21 188-208 26-46 (82)
98 COG0622 Predicted phosphoester 21.7 1.7E+02 0.0037 27.9 5.0 66 129-205 76-143 (172)
99 CHL00121 rpl27 ribosomal prote 21.1 74 0.0016 27.7 2.2 21 188-208 26-46 (86)
100 PRK13017 dihydroxy-acid dehydr 20.8 1.7E+02 0.0038 33.4 5.5 75 115-201 370-453 (596)
No 1
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=100.00 E-value=3.3e-177 Score=1361.41 Aligned_cols=431 Identities=58% Similarity=1.067 Sum_probs=413.2
Q ss_pred CCCCCCcccccCCCcccccccCCCCCCCCCCCCCCCCCceeccccCccccCCCCCCCceeecccCCCCCcCCCccCCCCC
Q 011768 19 EDFSDLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAH 98 (478)
Q Consensus 19 ~~~~~~~Y~~Gfgn~~~sEa~pGaLP~~qnspq~~~~gLYaEqlsGtaFt~pr~~n~~swlYRirPs~~h~~~~~~~~~~ 98 (478)
...+++.||+||||+|+|||||||||+||||||||+|||||||||||||||||++|+|||||||||||+|++|++++.
T Consensus 7 ~~~~~~~Y~~Gfgn~~~sEa~pgalP~gqnsPq~~~~gLyaEqlsgtaFtapr~~n~rswlYRirPs~~h~~f~~~~~-- 84 (438)
T PRK05341 7 SAANTLGYQSGFGNEFATEALPGALPVGQNSPQRAPYGLYAEQLSGTAFTAPRAENRRSWLYRIRPSVVHGPFEPVDS-- 84 (438)
T ss_pred CCCCCcccccccCCcccccccCCCCCCCCCCcccCCcccchhhccCccccCcCccccceeEEeechhhcCCCcccccc--
Confidence 445679999999999999999999999999999999999999999999999999999999999999999999998763
Q ss_pred CCccccCCCCCCCCCCCccccCCCCCCCCCCCcccceeeeeecCCcccccccEEEEEEeCCCCCCcceecCCCCEEEEEE
Q 011768 99 GKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQ 178 (478)
Q Consensus 99 ~~~~~~~~~~~~~~~P~~lrW~p~~~p~~~~Dfv~gl~tl~g~gD~~~~~G~ai~~y~~~~sM~~~~f~NaDGD~Li~pq 178 (478)
..+... ... +.+||||||+|+++|++++|||+||+||+||||+++|+|++||+|+||+||.+++|||+|||+|||||
T Consensus 85 ~~~~~~-~~~--~~~p~q~rW~P~~~p~~~~Dfv~gl~tl~gngD~~~~~G~ai~~y~~n~sM~~~~f~NaDGD~Livpq 161 (438)
T PRK05341 85 RLWRTF-DEV--PTPPNQLRWDPLPLPAEPTDFVDGLVTMAGNGDAEAQAGMAIHLYAANRSMQDRYFYNADGELLIVPQ 161 (438)
T ss_pred cccccc-ccc--CCCccccccCCCCCCCCCCCchhhhhhhhcCCCcccccccEEEEEeCCCCcccceeecCCCCEEEEEE
Confidence 222121 234 68999999999999988999999999999999999999999999999999988899999999999999
Q ss_pred eCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEEcCCeeeeCCCCCCCCCCCCCCCCccCCcccccccc
Q 011768 179 KGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWFEEGS 258 (478)
Q Consensus 179 ~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~~~~~~LPelGpiG~nglan~RDf~~P~a~~e~~~ 258 (478)
+|+|+|+||||+|+|+|||||||||||+|||+++++++||||||++|+||+||||||||+|||||+|||++|+|+|||.
T Consensus 162 ~G~l~i~TEfG~L~v~pgei~VIPRG~~frv~l~~gp~rgyi~E~~g~~f~LPdlGpiG~nglanpRDF~~P~a~~ed~- 240 (438)
T PRK05341 162 QGRLRLATELGVLDVEPGEIAVIPRGVKFRVELPDGPARGYVCENYGAPFRLPDLGPIGANGLANPRDFLTPVAAFEDR- 240 (438)
T ss_pred eCCEEEEEeccceEecCCCEEEEcCccEEEEecCCCCeeEEEEEecCCcccCCCCCcccccCCCChhHcCCCcchhccc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred cccEEEEEEECCceEEEEcCCCCCeEeeecCCccceeeccCCcccccccccccCCCCcceEEeecCCCCCceEEEeeeeC
Q 011768 259 RLGYTIVQKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFP 338 (478)
Q Consensus 259 ~~~~~vv~K~~g~l~~~~~~hsPfDVVaWhGn~~Pykydl~~F~pi~svs~dH~dPSi~tvlta~s~~pG~av~dFviF~ 338 (478)
+++|+|++|++|+||+++|+||||||||||||||||||||+||+|||||++||+||||||||||||++||+|+||||||+
T Consensus 241 ~~~~~vv~K~~G~l~~~~~~hsPfDVVaWhGn~~Pykydl~~F~pi~svs~dH~dPSI~tvltaps~~pg~a~~dFVIF~ 320 (438)
T PRK05341 241 EGPFELVAKFGGRLWRAEIDHSPLDVVAWHGNYAPYKYDLRRFNTIGSISFDHPDPSIFTVLTSPSDTPGTANIDFVIFP 320 (438)
T ss_pred CCCEEEEEEeCCeeEEEecCCCCceEeeecCcccceEeehhheeeccccccccCCCCceEEEeccCCCCCccccceEEEC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCCCCCCCCcccccceeeecccccccCCcCCCeeeeecCCCCCCCChHHHHHHHhcCCCCCCceeccceeE
Q 011768 339 PRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAF 418 (478)
Q Consensus 339 PRw~~~e~TfRpPYyHrNv~sE~mg~i~G~y~ar~~gf~pG~~SLHp~g~pHGP~~~~~e~a~~~~~~l~P~~~~~~lAf 418 (478)
|||+++|+||||||||||+||||||||+|+|+||++||+|||+||||+|+|||||++++|+|+++ +|+|+|+++||||
T Consensus 321 PRw~v~e~TfrpPyyHrNv~sEfmgli~G~y~ak~~gf~pGg~SLH~~~~pHGPd~~a~e~a~~~--~l~p~k~~~~lAf 398 (438)
T PRK05341 321 PRWLVAENTFRPPWFHRNVMSEFMGLIHGVYDAKAEGFVPGGASLHNCMSPHGPDAETFEKASNA--DLKPHKIDNTMAF 398 (438)
T ss_pred CcccCCCCccCCCCCccchhhhhhhhccccccccccCcCCCeeeecCCCCCCCCCHHHHHHhhcc--ccCCccccceEEE
Confidence 99999999999999999999999999999999998899999999999999999999999999999 9999999999999
Q ss_pred EeeeccCcccchhhhcCCCCChhhhhchhhhhcCCCCCc
Q 011768 419 MFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYEE 457 (478)
Q Consensus 419 MfET~~~l~~T~~A~~~~~~d~~Y~~~W~~l~~~f~~~~ 457 (478)
||||+++|++|+||++++.+|++|++||++|+++|+++.
T Consensus 399 MfET~~~l~~t~~A~~~~~~d~~Y~~~W~~l~~~f~~~~ 437 (438)
T PRK05341 399 MFETRYPIRPTRFALETPQLQADYDDCWQGLKKHFDPER 437 (438)
T ss_pred EEEccccccccHHHHhCccccccHHHHHHhHhhcCCCCC
Confidence 999999999999999987789999999999999997643
No 2
>PLN02658 homogentisate 1,2-dioxygenase
Probab=100.00 E-value=1.7e-176 Score=1355.17 Aligned_cols=428 Identities=84% Similarity=1.493 Sum_probs=408.2
Q ss_pred ccccCCCcccccccCCCCCCCCCCCCCCCCCceeccccCccccCCCCCCCceeecccCCCCCcCCCccCCCCCCCccccC
Q 011768 26 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEF 105 (478)
Q Consensus 26 Y~~Gfgn~~~sEa~pGaLP~~qnspq~~~~gLYaEqlsGtaFt~pr~~n~~swlYRirPs~~h~~~~~~~~~~~~~~~~~ 105 (478)
||+||||+|+|||+|||||+||||||||+|||||||||||||||||++|+|||||||||||+|++|++++.+.......+
T Consensus 1 Y~~Gfgn~~~sEa~pgalP~gqnsPq~~~~gLyaEqlsgtaFtapR~~n~rsWlYRirPs~~h~~f~~~~~~~~~~~~~~ 80 (435)
T PLN02658 1 YQSGFGNHFSSEALPGALPRGQNNPLLCPYGLYAEQLSGTAFTAPRKLNRRSWLYRIKPSVTHEPFKPRVPAHEKLVGEF 80 (435)
T ss_pred CCCccCCcccccccCCCCCCCCCCcccCCcccchhhccCccccCccccccceeEEeecccccCCCcccCCcccccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998763211111222
Q ss_pred C---CCCCCCCCCccccCCCCCCCCCCCcccceeeeeecCCcccccccEEEEEEeCCCCCCcceecCCCCEEEEEEeCcE
Q 011768 106 D---KSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRL 182 (478)
Q Consensus 106 ~---~~~~~~~P~~lrW~p~~~p~~~~Dfv~gl~tl~g~gD~~~~~G~ai~~y~~~~sM~~~~f~NaDGD~Li~pq~G~l 182 (478)
. .. +.+||||||+|+++|++++|||+||+||+||||+++|+|++||+|+||+||.+++|+|+|||+|||||+|+|
T Consensus 81 ~~~~~~--~~~p~qlrW~P~~~p~~~~Dfv~gl~tl~gngD~~~~~G~ai~iy~~n~sM~~~~f~NaDGD~Livpq~G~l 158 (435)
T PLN02658 81 DPSNSC--ETTPTQLRWRPFPVPDSPVDFVDGLFTVCGAGSPFLRHGYAIHMYVANKSMDDCAFCNADGDFLIVPQQGRL 158 (435)
T ss_pred cccccc--CCCccccccCCCCCCcCCCCchhhhhhhhcCCCcccccCcEEEEEeCCCCCccceeecCCCCEEEEEEeCCE
Confidence 1 12 478999999999999888999999999999999999999999999999999888999999999999999999
Q ss_pred EEEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEEcCCeeeeCCCCCCCCCCCCCCCCccCCcccccccccccE
Q 011768 183 WIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWFEEGSRLGY 262 (478)
Q Consensus 183 ~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~~~~~~LPelGpiG~nglan~RDf~~P~a~~e~~~~~~~ 262 (478)
+|+||||+|+|+|||||||||||+|||++++|++||||||++|+||+||||||||+|||||+|||++|+|+||+.++++|
T Consensus 159 ~i~TEfG~L~v~pgei~VIPRG~~frv~l~~gp~rgyv~E~~g~~f~LPdlGpiG~nglanpRDF~~P~a~~ed~~~~~~ 238 (435)
T PLN02658 159 WIKTELGKLQVSPGEIVVIPRGFRFAVDLPDGPSRGYVLEIFGGHFQLPDLGPIGANGLANPRDFLHPVAWFEDGSRPGY 238 (435)
T ss_pred EEEEeccceEecCCCEEEecCccEEEEecCCCCeeEEEEeecCCcccCCCCCcccccCCCCHhHccCCccccccccCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998756679
Q ss_pred EEEEEECCceEEEEcCCCCCeEeeecCCccceeeccCCcccccccccccCCCCcceEEeecCCCCCceEEEeeeeCCccc
Q 011768 263 TIVQKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWL 342 (478)
Q Consensus 263 ~vv~K~~g~l~~~~~~hsPfDVVaWhGn~~Pykydl~~F~pi~svs~dH~dPSi~tvlta~s~~pG~av~dFviF~PRw~ 342 (478)
+||+|++|+||+++|+||||||||||||||||||||+||+||||+++||+||||||||||||++||+|+||||||+|||+
T Consensus 239 ~vv~K~~g~l~~~~~~hsPfDVVaWhGn~~Pykydl~~F~pi~svs~dH~dPSI~tvltaps~~pg~a~~dFVIF~PRw~ 318 (435)
T PLN02658 239 TIVQKFGGELFTAKQDFSPFNVVAWHGNYVPYKYDLSKFCPVNTVLFDHADPSINTVLTAPTDKPGVALADFVIFPPRWL 318 (435)
T ss_pred EEEEEeCCeeEEEecCCCCceEeeecCcccceEechHHceeccccccccCCCCceEEEeccCCCCCccccceEEECCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCcccccceeeecccccccCCcCCCeeeeecCCCCCCCChHHHHHHHhcCCCC--CCceeccceeEEe
Q 011768 343 VAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEA--GPYKITDTMAFMF 420 (478)
Q Consensus 343 ~~e~TfRpPYyHrNv~sE~mg~i~G~y~ar~~gf~pG~~SLHp~g~pHGP~~~~~e~a~~~~~~l--~P~~~~~~lAfMf 420 (478)
++++||||||||||+||||||||+|+|+||++||+|||+||||+|+|||||++++|+|+++ ++ +|+|+++||||||
T Consensus 319 vae~TfrpPyyHrN~~sEfmgli~G~y~ak~~gf~pGg~SLH~~~~pHGPd~~~~e~a~~~--~~~~~p~k~~~~lAfMf 396 (435)
T PLN02658 319 VAEHTFRPPYYHRNCMSEFMGLIYGSYEAKADGFLPGGASLHSCMTPHGPDTATYEATIAR--PCADAPSKLTGTLAFMF 396 (435)
T ss_pred cccCccCCCCCccchhhhhhhhcccccccccCCccCCeeeecCCCCCCCCCHHHHHhhhcc--cccCCCeeccceEEEEE
Confidence 9999999999999999999999999999998889999999999999999999999999998 77 9999999999999
Q ss_pred eeccCcccchhhhcCCCCChhhhhchhhhhcCCCCCc
Q 011768 421 ESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYEE 457 (478)
Q Consensus 421 ET~~~l~~T~~A~~~~~~d~~Y~~~W~~l~~~f~~~~ 457 (478)
||+++|++|+||++++.+|++|++||++|+++|+++.
T Consensus 397 Et~~~l~~T~~A~~~~~~d~~Y~~~W~~l~~~f~~~~ 433 (435)
T PLN02658 397 ESSLIPRVCPWALESPFRDRDYYQCWIGLKSHFSRED 433 (435)
T ss_pred EccccccccHHHHhCccccchHHHHHHHHhhcCCccc
Confidence 9999999999999987789999999999999997654
No 3
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=100.00 E-value=8.2e-176 Score=1348.31 Aligned_cols=425 Identities=61% Similarity=1.122 Sum_probs=404.3
Q ss_pred CcccccCCCcccccccCCCCCCCCCCCCCCCCCceeccccCccccCCCCCCCceeecccCCCCCcCCCccCCCCCCCccc
Q 011768 24 LNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVS 103 (478)
Q Consensus 24 ~~Y~~Gfgn~~~sEa~pGaLP~~qnspq~~~~gLYaEqlsGtaFt~pr~~n~~swlYRirPs~~h~~~~~~~~~~~~~~~ 103 (478)
+.||+||||+|+|||||||||+||||||||+|||||||||||||||||++|+|||||||||||+|++|++++.+......
T Consensus 2 ~~Y~~Gfgn~~~sEa~pgalP~gqnsPq~~~~gLyaEqlsgtaFtapR~~n~rsWlYRirPs~~h~~f~~~~~~~~~~~~ 81 (429)
T TIGR01015 2 LKYLSGFGNEFESERVPGALPVGQNSPQKCPYGLYAEQLSGSAFTAPRHENKRSWLYRIRPSAAHEPFEPRDGNPGHVTA 81 (429)
T ss_pred CccccccCCcccccccCCCCCCCCCCcccCCCccchhhccCccccCCcccCccceeeeechhhcCCCccccccccccccC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999887621112223
Q ss_pred cCCCCCCCCCCCccccCCCCCCC-CCCCcccceeeeeecCCcccccccEEEEEEeCCCCCCcceecCCCCEEEEEEeCcE
Q 011768 104 EFDKSNSYTTPTQLRWKPVDIPD-SPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRL 182 (478)
Q Consensus 104 ~~~~~~~~~~P~~lrW~p~~~p~-~~~Dfv~gl~tl~g~gD~~~~~G~ai~~y~~~~sM~~~~f~NaDGD~Li~pq~G~l 182 (478)
.+... +.+||||||+|+++|+ +++|||+||+||+||||+++|+|++||+|+||+||.+++|||+|||+|||||+|+|
T Consensus 82 ~~~~~--~~~p~qlrW~P~~~p~~~~~Dfv~gl~tl~gngD~~~~~G~ai~iy~~~~sM~~~~f~NaDGD~Livpq~G~l 159 (429)
T TIGR01015 82 NFDEQ--APDPNQLRWSPFPIPSDEAVDFVDGLHTLCGAGDATSRTGLAIHIYLCNASMENRAFYNADGDFLIVPQQGAL 159 (429)
T ss_pred Ccccc--CCCccccccCCCCCCCccCCCchhhhhhhhcCCChhhccCceEEEEeCCCCcccceeeccCCCEEEEEEeCcE
Confidence 33334 6789999999999986 78999999999999999999999999999999999888999999999999999999
Q ss_pred EEEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEEcCCeeeeCCCCCCCCCCCCCCCCccCCcccccccc-ccc
Q 011768 183 WIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWFEEGS-RLG 261 (478)
Q Consensus 183 ~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~~~~~~LPelGpiG~nglan~RDf~~P~a~~e~~~-~~~ 261 (478)
+|+||||+|+|+|||||||||||+|||+++ +++||||||++|+||+||||||||+|||||+|||++|+|+|||++ .++
T Consensus 160 ~i~TEfG~L~v~pgei~VIPRG~~frv~l~-gp~rgyi~E~~g~~f~LPdlGpiG~nglan~RDF~~P~a~fed~~~~~~ 238 (429)
T TIGR01015 160 LITTEFGRLLVEPNEICVIPRGVRFRVTVL-EPARGYICEVYGAHFQLPDLGPIGANGLANPRDFEAPVAAFEDREVPGP 238 (429)
T ss_pred EEEEeccceEecCCCEEEecCccEEEEeeC-CCceEEEEeccCCcccCCCCCcccccCCCCHHHcCCCccchhccccCCC
Confidence 999999999999999999999999999996 799999999999999999999999999999999999999998752 248
Q ss_pred EEEEEEECCceEEEEcCCCCCeEeeecCCccceeeccCCcccccccccccCCCCcceEEeecCCCCCceEEEeeeeCCcc
Q 011768 262 YTIVQKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRW 341 (478)
Q Consensus 262 ~~vv~K~~g~l~~~~~~hsPfDVVaWhGn~~Pykydl~~F~pi~svs~dH~dPSi~tvlta~s~~pG~av~dFviF~PRw 341 (478)
|+||+|++|+||+++|+||||||||||||||||||||+||+|||||++||+||||||||||||++|||||||||||+|||
T Consensus 239 ~~vv~K~~G~l~~~~~~hsPfDVVaWhGn~~Pykydl~~F~pi~svs~dH~dPSI~tvltaps~~pg~av~dFviFpPRw 318 (429)
T TIGR01015 239 YTVINKFQGSLFAAKQDHSPFDVVAWHGNYVPYKYDLKRFNVINSVSFDHPDPSIFTVLTAPSDRPGTAIADFVIFPPRW 318 (429)
T ss_pred eEEEEEeCCeeEEEecCCCCcceeeecCcccceEeehhheeeccccccccCCCCceEEEeccCCCCCceEEEEEeeCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCcccccceeeecccccccCCcCCCeeeeecCCCCCCCChHHHHHHHhcCCCCCCceec-cceeEEe
Q 011768 342 LVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKIT-DTMAFMF 420 (478)
Q Consensus 342 ~~~e~TfRpPYyHrNv~sE~mg~i~G~y~ar~~gf~pG~~SLHp~g~pHGP~~~~~e~a~~~~~~l~P~~~~-~~lAfMf 420 (478)
+++|+||||||||||+||||||||+|+|+||++||+|||+||||+|+|||||++++|+|+++ +++|++++ ++|||||
T Consensus 319 ~vae~TfrpPyyHrN~~sEfmgli~G~y~ak~~gf~pGg~SlH~~~~pHGPd~~~~e~a~~~--~l~p~~~~e~tlAfMf 396 (429)
T TIGR01015 319 LVAEKTFRPPYYHRNCMSEFMGLITGAYDAKEGGFVPGGGSLHNMMTPHGPDFDCFEKASNA--KLKPERIADGTMAFMF 396 (429)
T ss_pred cCCCCccCCCCCccchhhhhhhhcccccccccCCcCCCeeeecCCCCCCCCCHHHHHHhhcc--ccCceEecCceEEEEE
Confidence 99999999999999999999999999999998889999999999999999999999999999 99999994 7899999
Q ss_pred eeccCcccchhhhcCCCCChhhhhchhhhhcCC
Q 011768 421 ESCLIPRICPWALESPFMDHDYYRCWIGLRSHF 453 (478)
Q Consensus 421 ET~~~l~~T~~A~~~~~~d~~Y~~~W~~l~~~f 453 (478)
||+++|++|+||++++.+|++|++||++|+++|
T Consensus 397 Et~~~l~~t~~A~~~~~~~~~Y~~~W~~l~~~f 429 (429)
T TIGR01015 397 ESSLSLAVTKWGATCQKLQEDYYKCWQPLKRHF 429 (429)
T ss_pred EccccccccHHHhhCccccccHHHHhhhhccCC
Confidence 999999999999998778999999999999987
No 4
>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-168 Score=1241.40 Aligned_cols=431 Identities=71% Similarity=1.242 Sum_probs=416.7
Q ss_pred CCCCcccccCCCcccc--cccCCCCCCCCCCCCCCCCCceeccccCccccCCCCCCCceeecccCCCCCcCCCccCCCCC
Q 011768 21 FSDLNYESGFGNSFSS--EAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAH 98 (478)
Q Consensus 21 ~~~~~Y~~Gfgn~~~s--Ea~pGaLP~~qnspq~~~~gLYaEqlsGtaFt~pr~~n~~swlYRirPs~~h~~~~~~~~~~ 98 (478)
.++++|++||||+|+| |++||+||.|||+||.|+|||||||||||+||+||..|+|||||||+|||+|.||++...++
T Consensus 4 ~~ElKY~sGFGn~~ssed~r~p~aLP~gQNsPq~Cpy~LYAEQlSGtaFT~PRs~N~RsWLYRi~PSv~H~PF~~~~~~~ 83 (446)
T KOG1417|consen 4 MEELKYLSGFGNHFSSEDERIPGALPVGQNSPQVCPYGLYAEQLSGTAFTAPRSLNQRSWLYRILPSVTHEPFEPRKPAH 83 (446)
T ss_pred HhhhhhhhcccccccccCccCCCCCcCCCCCCccCCchhhHhhccCceecCCccccchhheeeeccccccCCCccCCchh
Confidence 4679999999999999 78999999999999999999999999999999999999999999999999999999987544
Q ss_pred CCccccCCCCCCCCCCCccccCCCCCC-CCCCCcccceeeeeecCCcccccccEEEEEEeCCCCCCcceecCCCCEEEEE
Q 011768 99 GKLVSEFDKSNSYTTPTQLRWKPVDIP-DSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVP 177 (478)
Q Consensus 99 ~~~~~~~~~~~~~~~P~~lrW~p~~~p-~~~~Dfv~gl~tl~g~gD~~~~~G~ai~~y~~~~sM~~~~f~NaDGD~Li~p 177 (478)
..+...++.. +..||||||+|+++| ++.+|||+||.||||+||+.+++|+|||+|.||.||++++|+|+|||+||||
T Consensus 84 ~~~t~n~d~~--~pnPnQlRW~Pf~iP~~~~v~FVdgL~TvCGaGd~~sr~GlAIH~~~cN~sM~~safyNsDGDFLiVP 161 (446)
T KOG1417|consen 84 KHLTSNFDES--PPNPNQLRWKPFDIPTDKEVDFVDGLHTVCGAGDSFSRHGLAIHIYSCNTSMENSAFYNSDGDFLIVP 161 (446)
T ss_pred hhhhcccccC--CCCccccccCCCCCCCcCccchhcccceeccCCCcccccceEEEEEeecCCcccceeecCCCCEEEec
Confidence 5555556666 789999999999999 7889999999999999999999999999999999999999999999999999
Q ss_pred EeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEEcCCeeeeCCCCCCCCCCCCCCCCccCCccccccc
Q 011768 178 QKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWFEEG 257 (478)
Q Consensus 178 q~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~~~~~~LPelGpiG~nglan~RDf~~P~a~~e~~ 257 (478)
|+|.|.|+||||+|.|.|+||||||+|++|+|+++ |++||||+|+||.||+||||||||+|||||+|||++|+|||||+
T Consensus 162 Q~G~L~I~TEfGrllV~P~EI~VIpqG~RFsi~v~-~~sRGYilEvYg~HF~LPDLGPIGANGLAnpRDF~~PvAWfeD~ 240 (446)
T KOG1417|consen 162 QQGRLWITTEFGRLLVTPNEIAVIPQGIRFSIDVP-GPSRGYILEVYGAHFQLPDLGPIGANGLANPRDFLAPVAWFEDR 240 (446)
T ss_pred ccCcEEEEeeccceeecccceEEeecccEEEEecC-CCCcceEEEEecceeecCCCCcccccccCCchhcccchhhhhcc
Confidence 99999999999999999999999999999999995 89999999999999999999999999999999999999999997
Q ss_pred ccccEEEEEEECCceEEEEcCCCCCeEeeecCCccceeeccCCcccccccccccCCCCcceEEeecCCCCCceEEEeeee
Q 011768 258 SRLGYTIVQKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIF 337 (478)
Q Consensus 258 ~~~~~~vv~K~~g~l~~~~~~hsPfDVVaWhGn~~Pykydl~~F~pi~svs~dH~dPSi~tvlta~s~~pG~av~dFviF 337 (478)
..-+|+||.|++|++|.++|+|||||||||||||+||||||.+||+||+|++||.||||||||||||..||+|++|||||
T Consensus 241 ~vpeytii~K~qG~lF~AKQ~~spF~VVaWHGNYvPyKYdLkkFmviNtV~fDH~DPSIfTVLTaps~k~G~AiaDFVIF 320 (446)
T KOG1417|consen 241 LVPEYTIINKFQGELFTAKQDHSPFNVVAWHGNYVPYKYDLKKFMVINTVSFDHCDPSIFTVLTAPSVKPGVAIADFVIF 320 (446)
T ss_pred CCccceeeecccceeEEeccCCCcceEEEecCcccccccchhheeEEeeEecccCCCcceeEEecCCCCCCcEEeeeEEe
Confidence 55689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCCCCCCCCcccccceeeecccccccCCcCCCeeeeecCCCCCCCChHHHHHHHhcCCCCCCcee-ccce
Q 011768 338 PPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKI-TDTM 416 (478)
Q Consensus 338 ~PRw~~~e~TfRpPYyHrNv~sE~mg~i~G~y~ar~~gf~pG~~SLHp~g~pHGP~~~~~e~a~~~~~~l~P~~~-~~~l 416 (478)
||||.++++|||||||||||||||||+|+|.|+||.+||.|||+|||++|+|||||..+||+|+++ .|.|+++ +++|
T Consensus 321 PPRW~vae~TFRPPYYHRNCMSEfMGLI~G~YEAK~~GF~pGG~sLHS~MTPHGPD~~cfE~as~~--~l~p~rva~GTm 398 (446)
T KOG1417|consen 321 PPRWGVAEHTFRPPYYHRNCMSEFMGLIYGAYEAKEDGFLPGGASLHSMMTPHGPDTTCFEAASNV--KLMPERVAEGTM 398 (446)
T ss_pred CCcccccccccCCchhhhhHHHHHHHHhhhhhhhcccCcCCCCcchhhcccCCCCCchHHHHhhhc--ccCchhhcccee
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999999 9999
Q ss_pred eEEeeeccCcccchhhhcCCCCChhhhhchhhhhcCCCCC
Q 011768 417 AFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYE 456 (478)
Q Consensus 417 AfMfET~~~l~~T~~A~~~~~~d~~Y~~~W~~l~~~f~~~ 456 (478)
||||||+..|++|+|+++++.+|+||++||+.||+||...
T Consensus 399 aFMFESsL~~avt~Wg~~~~~lD~~Yy~cW~~LK~hFt~~ 438 (446)
T KOG1417|consen 399 AFMFESSLSLAVTKWGLESQFLDHDYYKCWQPLKSHFTRI 438 (446)
T ss_pred eeeehhhhhHHHhhhhhhcccccHHHHHHHHHHHhhCccc
Confidence 9999999999999999999999999999999999999864
No 5
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=100.00 E-value=6e-169 Score=1301.84 Aligned_cols=423 Identities=60% Similarity=1.088 Sum_probs=276.8
Q ss_pred cccccCCCcccccccCCCCCCCCCCCCCCCCCceeccccCccccCCCCCCCceeecccCCCCCcCCCccCCCCCCCcccc
Q 011768 25 NYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSE 104 (478)
Q Consensus 25 ~Y~~Gfgn~~~sEa~pGaLP~~qnspq~~~~gLYaEqlsGtaFt~pr~~n~~swlYRirPs~~h~~~~~~~~~~~~~~~~ 104 (478)
+||+||||+|+|||+|||||+|||+||||+|||||||||||+||+||++|+||||||||||++|.+|++...+.......
T Consensus 1 ~y~~gfgn~~~sea~pgalP~~~n~pq~~~~gLYaEqLsGt~Ftapr~~n~~swlYri~Ps~~~~~~~~~~~~~~~~~~~ 80 (424)
T PF04209_consen 1 EYQSGFGNEFESEALPGALPKGQNSPQKCPYGLYAEQLSGTAFTAPRAENRRSWLYRIRPSVAHGPFRPWEDNPQWFTAP 80 (424)
T ss_dssp -EEE-TT--EEETTSTT-S-SS-S--SS-GGG-EEEEEESS-TTS-GGG--EEEEEESS-TT-S---EE-----TB----
T ss_pred CccccCCCCccccccCCCCCCCCCCCCcCCCccchheeccccccCCCccccceeeecccCceeeccccccccccccccCC
Confidence 59999999999999999999999999999999999999999999999999999999999999999998876322222334
Q ss_pred CCCCCCCCCCCccccCCCCCC-CCCCCcccceeeeeecCCcccccccEEEEEEeCCCCCCcceecCCCCEEEEEEeCcEE
Q 011768 105 FDKSNSYTTPTQLRWKPVDIP-DSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLW 183 (478)
Q Consensus 105 ~~~~~~~~~P~~lrW~p~~~p-~~~~Dfv~gl~tl~g~gD~~~~~G~ai~~y~~~~sM~~~~f~NaDGD~Li~pq~G~l~ 183 (478)
+.+. +.+|+||||+|+++| +.++|||+||+||+||||+.+|+|++||+|+||+||.+++|||+|||||||||+|+|+
T Consensus 81 ~~~~--~~~p~~lrw~p~~~p~~~~~dfvdgl~ti~g~gd~~~~~g~ai~~y~~~~sM~~~~f~NaDGD~Li~~q~G~l~ 158 (424)
T PF04209_consen 81 FSEW--HPTPNQLRWDPFPIPSDEPTDFVDGLRTIAGAGDPLSNNGVAIHVYAANASMDDRAFRNADGDELIFPQQGSLR 158 (424)
T ss_dssp CCCS------S-EEE-S----TT----TTTTEEEEEEECECCCTEEEEEEEEEE-S---SEEEEESSEEEEEEEEES-EE
T ss_pred cccc--CCCccccccCCCCCCCcCCCCccccccccccCccccccCCcEEEEEEcCCCCCCcceEcCCCCEEEEEEECCEE
Confidence 4444 678999999999998 7889999999999999999999999999999999998889999999999999999999
Q ss_pred EEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEEcCCeeeeCCCCCCCCCCCCCCCCccCCcccccccccccEE
Q 011768 184 IATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWFEEGSRLGYT 263 (478)
Q Consensus 184 l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~~~~~~LPelGpiG~nglan~RDf~~P~a~~e~~~~~~~~ 263 (478)
|+||||+|+|+|||||||||||+|||+++ +++||||||++++||+|||+||||+|||||+|||++|+|+|+|+ +++|+
T Consensus 159 l~Te~G~L~v~pGd~~VIPRG~~~rv~l~-~p~rgyi~E~~~~~~~lPe~G~iG~ngla~~RDf~~P~a~~~d~-~~~~~ 236 (424)
T PF04209_consen 159 LETEFGRLDVRPGDYVVIPRGTRFRVELP-GPARGYIIENFGSHFRLPELGPIGANGLANPRDFRTPVAAFEDD-EGEWE 236 (424)
T ss_dssp EEETTEEEEE-TTEEEEE-TT--EEEE-S-SSEEEEEEEEES--EE----GGGTTS-BS-GGGEEEE--------EEEEE
T ss_pred EEecCeeEEEcCCeEEEECCeeEEEEEeC-CCceEEEEEcCCCeEEecCcCccccCCCCChhhhcCCCcccccC-CCCEE
Confidence 99999999999999999999999999997 89999999999999999999999999999999999999999986 67999
Q ss_pred EEEEECCceEEEEcCCCCCeEeeecCCccceeeccCCcccccccccccCCCCcceEEeecCCCCCceEEEeeeeCCcccc
Q 011768 264 IVQKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLV 343 (478)
Q Consensus 264 vv~K~~g~l~~~~~~hsPfDVVaWhGn~~Pykydl~~F~pi~svs~dH~dPSi~tvlta~s~~pG~av~dFviF~PRw~~ 343 (478)
|++|++|++|+++|+||||||||||||||||||||+||+||||++|||+||||||||||||+.||+||||||||+|||++
T Consensus 237 v~~K~~G~l~~~~~~hsPfDVVgW~Gn~~Pykynl~~F~pi~s~~~dH~dPsi~tvlT~ps~~~g~~v~dFviF~PRw~v 316 (424)
T PF04209_consen 237 VVVKFRGGLFSATYPHSPFDVVGWHGNYYPYKYNLRDFEPINSVSYDHPDPSIHTVLTAPSEAPGFAVCDFVIFPPRWLV 316 (424)
T ss_dssp EEEEETTEEEEEEEEE-S--EEEEEES---EEEEGGG-B----SSSS---GGGGEEEEEE-SSTT-EEEEEEEE-SEEE-
T ss_pred EEEEECCeeEEEEeCCCchheeeecCccccEEEehHHhhhhcceecccCCCceeEEEeccCCCCCceEEEEEeeCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcccccceeeecccccccCCcCCCeeeeecCCCCCCCChHHHHHHHhcCCCCCCceeccceeEEeeec
Q 011768 344 AEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESC 423 (478)
Q Consensus 344 ~e~TfRpPYyHrNv~sE~mg~i~G~y~ar~~gf~pG~~SLHp~g~pHGP~~~~~e~a~~~~~~l~P~~~~~~lAfMfET~ 423 (478)
+++||||||||||+|||+||||+|+|++|++||+|||+||||+|+|||||++++|+|+++ +++|++++++|||||||+
T Consensus 317 ~e~tfrpPyyHrNv~sE~mg~i~G~y~a~~~gf~pGg~SLH~~~~pHGP~~~~~e~A~~~--~l~p~~~~e~lAfM~eT~ 394 (424)
T PF04209_consen 317 AEHTFRPPYYHRNVMSEFMGLIRGNYDASRDGFEPGGISLHPCGTPHGPDPGAFEKASEA--ELKPEKTDETLAFMFETR 394 (424)
T ss_dssp -TTS--S---B--SSEEEEEEEE-----------TT-EEEE-TT--B---HHHHHHHHHS------EEEST-EEEEEEES
T ss_pred cCCCccCCCCCcceeeeeeeeeccccccccCCcCCCceeccCCCCCCCCChHHhhhhhhc--cCCceEeccceEEEEecc
Confidence 999999999999999999999999999988999999999999999999999999999999 999999866799999999
Q ss_pred cCcccchhhhcCCCCChhhhhchhhhhcCC
Q 011768 424 LIPRICPWALESPFMDHDYYRCWIGLRSHF 453 (478)
Q Consensus 424 ~~l~~T~~A~~~~~~d~~Y~~~W~~l~~~f 453 (478)
+||++|+||++++.+|++|++||++|+++|
T Consensus 395 ~pl~~t~~A~~~~~~d~~Y~~~W~~l~~~F 424 (424)
T PF04209_consen 395 RPLRVTEWALECEKLDPDYADSWQGLKKHF 424 (424)
T ss_dssp S--EE-HHHHH-------------------
T ss_pred ccccccHHHHhCccccccHHHHHhhHhccC
Confidence 999999999999888999999999999998
No 6
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.4e-158 Score=1184.10 Aligned_cols=422 Identities=56% Similarity=1.000 Sum_probs=407.3
Q ss_pred CcccccCCCcccccccCCCCCCCCCCCCCCCCCceeccccCccccCCCCCCCceeecccCCCCCcCCCccCCCCCCCccc
Q 011768 24 LNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVS 103 (478)
Q Consensus 24 ~~Y~~Gfgn~~~sEa~pGaLP~~qnspq~~~~gLYaEqlsGtaFt~pr~~n~~swlYRirPs~~h~~~~~~~~~~~~~~~ 103 (478)
.+||+||||.|++|++||+||++||+||+++|||||||||||+|||||++|+||||||||||+.|..|+++. ...|.+
T Consensus 3 ~~y~~gfg~~F~te~~pgalp~g~nspq~~~yglyaEqlsGs~ftapr~~n~rswlYri~ps~~h~~fr~~~--~~~w~s 80 (427)
T COG3508 3 ARYQSGFGNVFETEALPGALPVGQNSPQKAPYGLYAEQLSGSAFTAPRGENRRSWLYRIRPSANHPTFRPMK--LGEWKS 80 (427)
T ss_pred ccccccCCccccccccCCccccccCCcccccchhhHHHhcCCcccccccccccceeeeeccccCCCccCccc--hhhhcc
Confidence 359999999999999999999999999999999999999999999999999999999999999999999987 445544
Q ss_pred cCCCCCCCCCCCccccCCCCCCCCCCCcccceeeeeecCCcccccccEEEEEEeCCCCCCcceecCCCCEEEEEEeCcEE
Q 011768 104 EFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLW 183 (478)
Q Consensus 104 ~~~~~~~~~~P~~lrW~p~~~p~~~~Dfv~gl~tl~g~gD~~~~~G~ai~~y~~~~sM~~~~f~NaDGD~Li~pq~G~l~ 183 (478)
..... ..+|||+||+|+++|++.+||++||.+|++|||+..++||+||+|.+|++|.+++|||||||+|||||+|+++
T Consensus 81 ~~~~~--~a~~~~~rwspl~~p~a~tdFldgi~~~~~~~~~~~~~g~~i~~y~~n~sm~~~~f~NADge~Livpq~G~l~ 158 (427)
T COG3508 81 ALIGP--WATPNQLRWSPLPLPKAPTDFLDGILLIANNGDADTQDGVAIHVYKVNESMTKRFFRNADGELLIVPQQGELR 158 (427)
T ss_pred cCCCc--cccccccccCccccccCccHHHHHHHHhhcCCCccccCceEEEEEEccccchhhhhhcCCCCEEEEeecceEE
Confidence 43222 4689999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred EEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEEcCCeeeeCCCCCCCCCCCCCCCCccCCcccccccccccEE
Q 011768 184 IATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWFEEGSRLGYT 263 (478)
Q Consensus 184 l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~~~~~~LPelGpiG~nglan~RDf~~P~a~~e~~~~~~~~ 263 (478)
|.||+|.|+|+||||+|||||++|||++.++.+|||+||++|..|+|||+||||+|||||||||++|+|+|+|. ++.++
T Consensus 159 l~te~G~l~v~pgeiavIPRG~~frve~~~~~~rgy~~En~ga~~~lpe~G~ig~n~lanpRDf~tPvar~ed~-e~~~q 237 (427)
T COG3508 159 LKTELGVLEVEPGEIAVIPRGTTFRVELKDGEARGYGCENYGAKFRLPELGPIGANGLANPRDFKTPVARYEDS-EGPTQ 237 (427)
T ss_pred EEEeeceEEecCCcEEEeeCCceEEEEecCCceEEEEEeecccccccccccccccccccChhhccCceeeeccc-CCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999985 78999
Q ss_pred EEEEECCceEEEEcCCCCCeEeeecCCccceeeccCCcccccccccccCCCCcceEEeecCCCCCceEEEeeeeCCcccc
Q 011768 264 IVQKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLV 343 (478)
Q Consensus 264 vv~K~~g~l~~~~~~hsPfDVVaWhGn~~Pykydl~~F~pi~svs~dH~dPSi~tvlta~s~~pG~av~dFviF~PRw~~ 343 (478)
||+|+.|+||.++.+|||||||||||||+||||||++|+|||+++|||+|||||||||+||++||||+||||||||||++
T Consensus 238 lvvK~~g~l~~~e~~hsPlDVVaWhGnl~Pykydl~~f~pi~t~~~dhPdPSifTvltapsd~~g~~~cdFVifpprw~~ 317 (427)
T COG3508 238 LVVKTHGGLWAVELDHSPLDVVAWHGNLAPYKYDLRDFNPIGTISYDHPDPSIFTVLTAPSDTPGFANCDFVIFPPRWLV 317 (427)
T ss_pred EEEEecCcEEEEecCCCCceeEeecCcccceEeeeeccccccceeccCCCCceEEEEecCCCCCCeeEEEEEecCchhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcccccceeeecccccccCCcCCCeeeeecCCCCCCCChHHHHHHHhcCCCCCCceeccceeEEeeec
Q 011768 344 AEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESC 423 (478)
Q Consensus 344 ~e~TfRpPYyHrNv~sE~mg~i~G~y~ar~~gf~pG~~SLHp~g~pHGP~~~~~e~a~~~~~~l~P~~~~~~lAfMfET~ 423 (478)
+|+||||||||||+||||||||+|+||||.+||+|||+||||||+.||||+++||||+++ +|||+|+++|||||||||
T Consensus 318 ~e~tfrppwyHrN~~sEfmgli~G~ydak~~GfvpGg~sLH~~m~~HGPd~~afeka~~~--~l~p~k~d~tmAfMfETr 395 (427)
T COG3508 318 AEQTFRPPWYHRNDMSEFMGLISGQYDAKAEGFVPGGASLHNCMSAHGPDPSAFEKALNA--RLKPHKIDDTMAFMFETR 395 (427)
T ss_pred cccccCCCceecchHHHHHhHhhchhhhhccCcCcCcceecccccccCCChHHHHHhhhc--ccCcccccceEEEEEEec
Confidence 999999999999999999999999999998999999999999999999999999999999 999999999999999999
Q ss_pred cCcccchhhhcCCCCChhhhhchhhhhcCCCC
Q 011768 424 LIPRICPWALESPFMDHDYYRCWIGLRSHFSY 455 (478)
Q Consensus 424 ~~l~~T~~A~~~~~~d~~Y~~~W~~l~~~f~~ 455 (478)
.++++|.+|++.+.+|.||..||+++ |++
T Consensus 396 ~~~~~s~~A~E~~~~Q~~Y~~cW~~l---f~~ 424 (427)
T COG3508 396 KVLRPSRYAAEIDALQDDYDACWQGL---FNK 424 (427)
T ss_pred cccchhHHhhhhcccccchhhhhhhc---ccc
Confidence 99999999999988999999999998 654
No 7
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=97.47 E-value=0.0025 Score=66.78 Aligned_cols=199 Identities=19% Similarity=0.220 Sum_probs=110.7
Q ss_pred CCCCEEEEEEeCcEEEEee--ceeee---ecCCcEEEEcceeEEEEECCCCCeeEEEEEEcC-CeeeeCCCCCCCCCCCC
Q 011768 169 ADGDFLVVPQKGRLWIATE--CGKLE---VSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG-THFQLPDLGPIGANGLA 242 (478)
Q Consensus 169 aDGD~Li~pq~G~l~l~TE--fG~L~---v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~~-~~~~LPelGpiG~ngla 242 (478)
..++|++++.+|++++.-. -|+.. +++||+++||+|+.+++...+..++.++ ++. +.|.-++. ++....++
T Consensus 85 H~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~fP~g~~H~~~n~~~~~~~l~--vf~~~~f~~~~~-~~~~~~l~ 161 (367)
T TIGR03404 85 HKEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWYFPPGIPHSLQGLDEGCEFLL--VFDDGNFSEDGT-FLVTDWLA 161 (367)
T ss_pred CCCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEECCCCeEEEEECCCCeEEEE--EeCCcccCCcce-eeHHHHHH
Confidence 3678999999999998875 46665 9999999999999999876555555333 332 22333321 11122222
Q ss_pred -CCCCc-----cCCccccccc-ccccEEEEEEECCceEEEEcCCCCCeEeeecCC-ccceeeccCCcccccccccccCCC
Q 011768 243 -APRDF-----LVPTAWFEEG-SRLGYTIVQKFGGELFTARQDFSPFNVVAWHGN-YVPYKYDLSKFCPFNTVLVDHGDP 314 (478)
Q Consensus 243 -n~RDf-----~~P~a~~e~~-~~~~~~vv~K~~g~l~~~~~~hsPfDVVaWhGn-~~Pykydl~~F~pi~svs~dH~dP 314 (478)
.|.|+ ..+...++.. .++.|.+.-+.-|.+- ....++| -|. -.||||++.+-.|... . +=
T Consensus 162 ~~p~~Vla~~f~l~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~p~~~--~---gG 229 (367)
T TIGR03404 162 HTPKDVLAKNFGVPESAFDNLPLKELYIFPGTVPGPLD-QEAVTGP------AGEVPGPFTYHLSEQKPKQV--P---GG 229 (367)
T ss_pred hCCHHHHHHHhCCCHHHHHhccccCceEEecCCCCccc-cccCcCC------CCCCCccEEEEhhhCCceec--C---Cc
Confidence 22222 2222222111 1122332111111110 0111122 233 2368999999888643 1 12
Q ss_pred CcceEEeecCCCC---CceEEEeeeeCCccccCCCCCCCCCCCCCcccccceeeecccccc---------cCCcCCCeee
Q 011768 315 SINTVLTAPTDKP---GVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAK---------ADGFLPGGAS 382 (478)
Q Consensus 315 Si~tvlta~s~~p---G~av~dFviF~PRw~~~e~TfRpPYyHrNv~sE~mg~i~G~y~ar---------~~gf~pG~~S 382 (478)
++ ..++++ ..| +++++-+ -..++..|+|=.|.| .+|+++++.|.-... ...+.+|.+.
T Consensus 230 ~~-~~~~~~-~~p~~~~~s~~~~-------~l~PG~~~~~H~H~~-~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~ 299 (367)
T TIGR03404 230 TV-RIADST-NFPVSKTIAAAIV-------TVEPGAMRELHWHPN-ADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVG 299 (367)
T ss_pred eE-EEEChh-hccCcceEEEEEE-------EECCCCccCCeeCcC-CCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEE
Confidence 22 222222 123 2222221 257899999966666 369999999985332 1248999999
Q ss_pred eecCCCCCCC
Q 011768 383 LHSCMTPHGP 392 (478)
Q Consensus 383 LHp~g~pHGP 392 (478)
+-|.+.+|.=
T Consensus 300 ~iP~g~~H~i 309 (367)
T TIGR03404 300 YVPRNMGHYV 309 (367)
T ss_pred EECCCCeEEE
Confidence 9999999943
No 8
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=97.44 E-value=0.00027 Score=66.47 Aligned_cols=57 Identities=18% Similarity=0.284 Sum_probs=50.0
Q ss_pred ecCCCCEEEEEEeCcEEEEeece----eeeecCCcEEEEcceeEEEEECCCCCeeEEEEEEc
Q 011768 167 CNADGDFLVVPQKGRLWIATECG----KLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIF 224 (478)
Q Consensus 167 ~NaDGD~Li~pq~G~l~l~TEfG----~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~ 224 (478)
-..++||+++..+|++.|+..-+ .+.+++||+++||+|+.++... .+.+.++++|--
T Consensus 44 H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~flvP~gvpHsP~r-~~~t~~LvIE~~ 104 (159)
T TIGR03037 44 HDDPGEEFFYQLKGEMYLKVTEEGKREDVPIREGDIFLLPPHVPHSPQR-PAGSIGLVIERK 104 (159)
T ss_pred ccCCCceEEEEEcceEEEEEEcCCcEEEEEECCCCEEEeCCCCCccccc-CCCcEEEEEEeC
Confidence 34569999999999999977664 8999999999999999999976 567999999975
No 9
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=97.36 E-value=0.00062 Score=60.68 Aligned_cols=76 Identities=14% Similarity=0.110 Sum_probs=60.5
Q ss_pred cccEEEEEEeCCCCCCcceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEEcCC
Q 011768 148 HGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGT 226 (478)
Q Consensus 148 ~G~ai~~y~~~~sM~~~~f~NaDGD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~~~ 226 (478)
..++..+....... ..=.+.+-||.+++.+|++.+.-.-...+|++||.++||.|+.+|+.- .|.....++|+...
T Consensus 36 ~~~~~~~v~pg~~~--~~~~H~~~dE~~~Vl~G~g~v~~~~~~~~v~~gd~~~iP~g~~H~~~N-~G~~~L~liei~~p 111 (127)
T COG0662 36 YSIARILVKPGEEI--SLHHHHHRDEHWYVLEGTGKVTIGGEEVEVKAGDSVYIPAGTPHRVRN-TGKIPLVLIEVQSP 111 (127)
T ss_pred EEEEEEEECCCccc--CcccccCcceEEEEEeeEEEEEECCEEEEecCCCEEEECCCCcEEEEc-CCCcceEEEEEecC
Confidence 34555555555543 133555679999999999999999999999999999999999999986 45678999998744
No 10
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=97.30 E-value=0.00075 Score=52.42 Aligned_cols=56 Identities=21% Similarity=0.374 Sum_probs=46.5
Q ss_pred ceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECC-CCCeeEEE
Q 011768 165 AFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLP-DGPSRGYI 220 (478)
Q Consensus 165 ~f~NaDGD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~-~g~~rgyi 220 (478)
.-++.+.++++++.+|++.+..+-....+++||.++||.|+.+++.-. +++++.++
T Consensus 13 ~h~H~~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~ 69 (71)
T PF07883_consen 13 PHRHPGEDEFFYVLSGEGTLTVDGERVELKPGDAIYIPPGVPHQVRNPGDEPARFLV 69 (71)
T ss_dssp EEEESSEEEEEEEEESEEEEEETTEEEEEETTEEEEEETTSEEEEEEESSSEEEEEE
T ss_pred CEECCCCCEEEEEEECCEEEEEccEEeEccCCEEEEECCCCeEEEEECCCCCEEEEE
Confidence 445666669999999999999999999999999999999999999653 34555554
No 11
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=96.97 E-value=0.0028 Score=60.75 Aligned_cols=56 Identities=16% Similarity=0.285 Sum_probs=49.1
Q ss_pred cCCCCEEEEEEeCcEEEEeec----eeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEEc
Q 011768 168 NADGDFLVVPQKGRLWIATEC----GKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIF 224 (478)
Q Consensus 168 NaDGD~Li~pq~G~l~l~TEf----G~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~ 224 (478)
...+||+++..+|++.|+.+- ..+.+++||+.+||+|+.++..- ...+.++++|--
T Consensus 51 ~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fllP~gvpHsP~r-~~~tv~LviE~~ 110 (177)
T PRK13264 51 YDPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMFLLPPHVPHSPQR-EAGSIGLVIERK 110 (177)
T ss_pred cCCCceEEEEECCeEEEEEEcCCceeeEEECCCCEEEeCCCCCcCCcc-CCCeEEEEEEeC
Confidence 467899999999999988843 48999999999999999999976 567999999975
No 12
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=96.86 E-value=0.019 Score=51.88 Aligned_cols=59 Identities=14% Similarity=0.094 Sum_probs=46.4
Q ss_pred ceecCCCCEEEEEEeCcEEEEeece------eeeecCCcEEEEcceeEEEEECC-CCCeeEEEEEE
Q 011768 165 AFCNADGDFLVVPQKGRLWIATECG------KLEVSPGEIAVLPQGFRFAVSLP-DGPSRGYIAEI 223 (478)
Q Consensus 165 ~f~NaDGD~Li~pq~G~l~l~TEfG------~L~v~pGd~vVIPRGi~frv~l~-~g~~rgyi~E~ 223 (478)
.-.+.++++++++.+|++.+...-. ...+++||+++||+|+.+.+.-. +.+++.+++.+
T Consensus 45 ~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~~~~ 110 (146)
T smart00835 45 PHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQGHPHFQVNSGDENLEFVAFNT 110 (146)
T ss_pred CeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEECCCCEEEEEcCCCCCEEEEEEec
Confidence 4455668899999999999987544 88999999999999999988653 34666665443
No 13
>PRK11171 hypothetical protein; Provisional
Probab=96.42 E-value=0.034 Score=55.74 Aligned_cols=103 Identities=12% Similarity=0.110 Sum_probs=69.4
Q ss_pred CCCCccccCCCCCCCCCCCcccceeeeeecCCcccccccEEEEEEeCC--CCCCcceecCCCCEEEEEEeCcEEEEeece
Q 011768 112 TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANK--SMDNCAFCNADGDFLVVPQKGRLWIATECG 189 (478)
Q Consensus 112 ~~P~~lrW~p~~~p~~~~Dfv~gl~tl~g~gD~~~~~G~ai~~y~~~~--sM~~~~f~NaDGD~Li~pq~G~l~l~TEfG 189 (478)
++|+-+.+.. +| +|......+....... .++.+.+..... +... .+....+++++++.+|++.++.+-.
T Consensus 31 ~~p~~~v~~~--lp----~~~~~~~~~L~~~~~~--~~~~~~~~~l~PG~~~~~-~~h~~~~eE~~~VlsG~l~v~~~g~ 101 (266)
T PRK11171 31 IPPDDIVTSV--LP----GWENTRAWVLARPGLG--ATFSQYLVEVEPGGGSDQ-PEPDEGAETFLFVVEGEITLTLEGK 101 (266)
T ss_pred ECCcCEEeec--CC----CCCCeEEEEEeCCCCC--CcEEEEEEEECCCCcCCC-CCCCCCceEEEEEEeCEEEEEECCE
Confidence 4455445333 34 4555566666655332 334444444332 2221 2334467999999999999999999
Q ss_pred eeeecCCcEEEEcceeEEEEE-CCCCCeeEEEEEE
Q 011768 190 KLEVSPGEIAVLPQGFRFAVS-LPDGPSRGYIAEI 223 (478)
Q Consensus 190 ~L~v~pGd~vVIPRGi~frv~-l~~g~~rgyi~E~ 223 (478)
...+++||.+.+|.++.+++. ..+.+++.+++.-
T Consensus 102 ~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l~v~~ 136 (266)
T PRK11171 102 THALSEGGYAYLPPGSDWTLRNAGAEDARFHWIRK 136 (266)
T ss_pred EEEECCCCEEEECCCCCEEEEECCCCCEEEEEEEc
Confidence 999999999999999999996 4456888888753
No 14
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=96.36 E-value=0.02 Score=48.12 Aligned_cols=58 Identities=14% Similarity=0.124 Sum_probs=44.0
Q ss_pred ecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCC-CeeEEEEEEc
Q 011768 167 CNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDG-PSRGYIAEIF 224 (478)
Q Consensus 167 ~NaDGD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g-~~rgyi~E~~ 224 (478)
.-.|.=+|+++.+|++.+..+.....++|||+++||.|..+++...++ +.+.+++-..
T Consensus 19 h~h~~~~i~~v~~G~~~~~~~~~~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~~~ 77 (136)
T PF02311_consen 19 HWHDFYEIIYVLSGEGTLHIDGQEYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIYFS 77 (136)
T ss_dssp ETT-SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE-
T ss_pred EECCCEEEEEEeCCEEEEEECCEEEEEECCEEEEecCCccEEEecCCCCCEEEEEEEEC
Confidence 557788999999999999999999999999999999999999987554 6777777654
No 15
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=96.27 E-value=0.015 Score=51.27 Aligned_cols=46 Identities=17% Similarity=0.293 Sum_probs=41.2
Q ss_pred ecCC-CCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECC
Q 011768 167 CNAD-GDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLP 212 (478)
Q Consensus 167 ~NaD-GD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~ 212 (478)
-+++ ++..+++.+|++.++.+--...+++||+++||+|+.+.+.-.
T Consensus 59 H~hp~~~~~~~Vl~G~~~~~~~g~~~~l~~Gd~i~ip~g~~H~~~a~ 105 (131)
T COG1917 59 HTHPLGEQTIYVLEGEGTVQLEGEKKELKAGDVIIIPPGVVHGLKAV 105 (131)
T ss_pred ccCCCcceEEEEEecEEEEEecCCceEecCCCEEEECCCCeeeeccC
Confidence 4554 999999999999999997778899999999999999999653
No 16
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=96.22 E-value=0.01 Score=48.48 Aligned_cols=59 Identities=15% Similarity=0.229 Sum_probs=46.0
Q ss_pred cEEEEEEeCCCCCCcceecCCCCEEEEEEeCcEEEEeece-eeeecCCcEEEEcceeEEEEEC
Q 011768 150 YAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECG-KLEVSPGEIAVLPQGFRFAVSL 211 (478)
Q Consensus 150 ~ai~~y~~~~sM~~~~f~NaDGD~Li~pq~G~l~l~TEfG-~L~v~pGd~vVIPRGi~frv~l 211 (478)
+...++.++..- +=...+.||++++.+|+..|.-+-| ...++|||+++||+|.+=+++.
T Consensus 7 ~~~g~w~~~pg~---~~~~~~~~E~~~vleG~v~it~~~G~~~~~~aGD~~~~p~G~~~~w~v 66 (74)
T PF05899_consen 7 FSAGVWECTPGK---FPWPYPEDEFFYVLEGEVTITDEDGETVTFKAGDAFFLPKGWTGTWEV 66 (74)
T ss_dssp EEEEEEEEECEE---EEEEESSEEEEEEEEEEEEEEETTTEEEEEETTEEEEE-TTEEEEEEE
T ss_pred EEEEEEEECCce---eEeeCCCCEEEEEEEeEEEEEECCCCEEEEcCCcEEEECCCCEEEEEE
Confidence 345777887642 1123345999999999999999888 7889999999999999888765
No 17
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=96.15 E-value=0.0075 Score=56.54 Aligned_cols=49 Identities=22% Similarity=0.333 Sum_probs=40.6
Q ss_pred ceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCC
Q 011768 165 AFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPD 213 (478)
Q Consensus 165 ~f~NaDGD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~ 213 (478)
+-+--+=||+.++.+|+|.|..+-.++..+|||++.||+|.+-++.-++
T Consensus 89 f~wtl~YDEi~~VlEG~L~i~~~G~~~~A~~GDvi~iPkGs~I~fst~~ 137 (152)
T PF06249_consen 89 FPWTLTYDEIKYVLEGTLEISIDGQTVTAKPGDVIFIPKGSTITFSTPD 137 (152)
T ss_dssp EEEE-SSEEEEEEEEEEEEEEETTEEEEEETT-EEEE-TT-EEEEEEEE
T ss_pred ccEEeecceEEEEEEeEEEEEECCEEEEEcCCcEEEECCCCEEEEecCC
Confidence 5577788999999999999999988999999999999999998887654
No 18
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=96.13 E-value=0.045 Score=51.37 Aligned_cols=58 Identities=14% Similarity=0.153 Sum_probs=50.9
Q ss_pred eecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECC-CCCeeEEEEEE
Q 011768 166 FCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLP-DGPSRGYIAEI 223 (478)
Q Consensus 166 f~NaDGD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~-~g~~rgyi~E~ 223 (478)
.....|+|++++.+|++.++.+-....+++||.++||.++.+++.-+ +.+++.+++..
T Consensus 123 ~~~h~~~E~~~Vl~G~~~~~~~~~~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~~~ 181 (185)
T PRK09943 123 RIKHQGEEIGTVLEGEIVLTINGQDYHLVAGQSYAINTGIPHSFSNTSAGICRIISAHT 181 (185)
T ss_pred ccccCCcEEEEEEEeEEEEEECCEEEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEEeC
Confidence 35678999999999999999999999999999999999999999865 34788887753
No 19
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=95.73 E-value=0.023 Score=53.34 Aligned_cols=46 Identities=15% Similarity=0.304 Sum_probs=34.1
Q ss_pred CCCCEEEEEEeCcEEEEeece-----eeeecCCcEEEEcceeEEEEECCCC
Q 011768 169 ADGDFLVVPQKGRLWIATECG-----KLEVSPGEIAVLPQGFRFAVSLPDG 214 (478)
Q Consensus 169 aDGD~Li~pq~G~l~l~TEfG-----~L~v~pGd~vVIPRGi~frv~l~~g 214 (478)
.+.||+.++.+|++.+-=..+ +|.+++||+++||+||.+|+.+...
T Consensus 90 H~deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~~ 140 (157)
T PF03079_consen 90 HEDEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGES 140 (157)
T ss_dssp ESS-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEESTT
T ss_pred cChheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCCC
Confidence 456999999999987765544 5889999999999999999998543
No 20
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=95.63 E-value=0.03 Score=52.93 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=40.5
Q ss_pred CCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEE
Q 011768 170 DGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGY 219 (478)
Q Consensus 170 DGD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgy 219 (478)
+=|++-++.+|+|.+.++-+.+..+|||++.||+|-.-.+..+. .+|.+
T Consensus 117 ~yDe~d~VlEGrL~V~~~g~tv~a~aGDvifiPKgssIefst~g-ea~fl 165 (176)
T COG4766 117 NYDEIDYVLEGRLHVRIDGRTVIAGAGDVIFIPKGSSIEFSTTG-EAKFL 165 (176)
T ss_pred cccceeEEEeeeEEEEEcCCeEecCCCcEEEecCCCeEEEeccc-eEEEE
Confidence 34788999999999999999999999999999999766665533 45544
No 21
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=95.39 E-value=0.1 Score=47.05 Aligned_cols=80 Identities=18% Similarity=0.210 Sum_probs=50.7
Q ss_pred cccEEEEEE-eCCCCCCcceecCCCCEEEEEEeCcEEEEeec--e------ee----eecCCcEEEEcceeEEEEECC--
Q 011768 148 HGYAIHMYT-ANKSMDNCAFCNADGDFLVVPQKGRLWIATEC--G------KL----EVSPGEIAVLPQGFRFAVSLP-- 212 (478)
Q Consensus 148 ~G~ai~~y~-~~~sM~~~~f~NaDGD~Li~pq~G~l~l~TEf--G------~L----~v~pGd~vVIPRGi~frv~l~-- 212 (478)
.++++.+.. --.+|-. -.++ ++++|+++.+|++++..-. + .. ++++||+++||+|..+-+.-.
T Consensus 32 ~~~~~~~~~i~pg~~~~-Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~ 109 (144)
T PF00190_consen 32 NGVAVRRVLIEPGGLRA-PHYH-NADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVVPAGHPHWIINDGD 109 (144)
T ss_dssp TTEEEEEEEEETTEEEE-EEEE-SSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEEE-TT-EEEEEECSS
T ss_pred cceEEEeeehhcCCccc-eeEe-eeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccceeeccceeEEEEcCCC
Confidence 344445444 2235522 3466 9999999999999965332 2 22 399999999999999988764
Q ss_pred CCCeeEEEEEEcCCeee
Q 011768 213 DGPSRGYIAEIFGTHFQ 229 (478)
Q Consensus 213 ~g~~rgyi~E~~~~~~~ 229 (478)
++....+++.+.....+
T Consensus 110 ~~~~~~~~f~~~~~~~~ 126 (144)
T PF00190_consen 110 DEALVLIIFDTNNPPNQ 126 (144)
T ss_dssp SSEEEEEEEEESSTTGE
T ss_pred CCCEEEEEEECCCCccc
Confidence 33456666666544343
No 22
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=95.38 E-value=0.21 Score=49.98 Aligned_cols=57 Identities=16% Similarity=0.245 Sum_probs=48.4
Q ss_pred ecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEE-CCCCCeeEEEEEE
Q 011768 167 CNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVS-LPDGPSRGYIAEI 223 (478)
Q Consensus 167 ~NaDGD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~-l~~g~~rgyi~E~ 223 (478)
.....++.+++.+|++.|+-+-....+++||++.||.|..+++. ..+.+++.++++-
T Consensus 76 ~~~g~ee~iyVl~G~l~v~~~g~~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l~v~k 133 (260)
T TIGR03214 76 GGEGIETFLFVISGEVNVTAEGETHELREGGYAYLPPGSKWTLANAQAEDARFFLYKK 133 (260)
T ss_pred CCCceEEEEEEEeCEEEEEECCEEEEECCCCEEEECCCCCEEEEECCCCCEEEEEEEe
Confidence 33344899999999999998877789999999999999999994 4456899998884
No 23
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=94.98 E-value=0.29 Score=51.58 Aligned_cols=72 Identities=13% Similarity=0.104 Sum_probs=49.4
Q ss_pred ccEEEEEEeC-CCCCCcceecCCCCEEEEEEeCcEEEEee--c--e-eeeecCCcEEEEcceeEEEEECC-CCCeeEEEE
Q 011768 149 GYAIHMYTAN-KSMDNCAFCNADGDFLVVPQKGRLWIATE--C--G-KLEVSPGEIAVLPQGFRFAVSLP-DGPSRGYIA 221 (478)
Q Consensus 149 G~ai~~y~~~-~sM~~~~f~NaDGD~Li~pq~G~l~l~TE--f--G-~L~v~pGd~vVIPRGi~frv~l~-~g~~rgyi~ 221 (478)
++++...... ..| ...=.+...||++|+.+|++++.-. - + ...+++||+++||+|..+++.-. +++++.+++
T Consensus 244 ~~s~~~~~l~PG~~-~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~i 322 (367)
T TIGR03404 244 TIAAAIVTVEPGAM-RELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEV 322 (367)
T ss_pred eEEEEEEEECCCCc-cCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEE
Confidence 4544443332 234 2233577899999999999988742 1 2 45799999999999999999753 345554444
No 24
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=94.91 E-value=0.12 Score=50.57 Aligned_cols=58 Identities=16% Similarity=0.188 Sum_probs=48.9
Q ss_pred eecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEE
Q 011768 166 FCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEI 223 (478)
Q Consensus 166 f~NaDGD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~ 223 (478)
....|.-+|+++.+|++.+..+.....+.+||+++||.|..++.....+..+++.+..
T Consensus 38 ~H~H~~~ei~~v~~G~~~~~i~~~~~~l~~g~l~~i~p~~~H~~~~~~~~~~~~~l~~ 95 (278)
T PRK10296 38 LHQHDYYEFTLVLTGRYYQEINGKRVLLERGDFVFIPLGSHHQSFYEFGATRILNVGI 95 (278)
T ss_pred CcccccEEEEEEEeceEEEEECCEEEEECCCcEEEeCCCCccceeeeCCCcEEEEEEe
Confidence 4566889999999999999999999999999999999999997754344567776664
No 25
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=94.80 E-value=0.29 Score=48.99 Aligned_cols=53 Identities=17% Similarity=0.261 Sum_probs=43.9
Q ss_pred eecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEE
Q 011768 166 FCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGY 219 (478)
Q Consensus 166 f~NaDGD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgy 219 (478)
=.--+=||++++.+|+++++.+--...++|||.++||+|....+..++ .+|.+
T Consensus 170 ~wtl~~dEi~YVLEGe~~l~IdG~t~~l~pGDvlfIPkGs~~hf~tp~-~aRfl 222 (233)
T PRK15457 170 PWTLNYDEIDMVLEGELHVRHEGETMIAKAGDVMFIPKGSSIEFGTPS-SVRFL 222 (233)
T ss_pred ceeccceEEEEEEEeEEEEEECCEEEEeCCCcEEEECCCCeEEecCCC-CeeEE
Confidence 356677899999999999999988899999999999999996664443 55553
No 26
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=94.37 E-value=0.39 Score=44.80 Aligned_cols=59 Identities=12% Similarity=0.137 Sum_probs=50.9
Q ss_pred ceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEEc
Q 011768 165 AFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIF 224 (478)
Q Consensus 165 ~f~NaDGD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~ 224 (478)
+=+..--+|.+++.+|++.+..+--...+.+||.+.||+|..+|+.-++ ..-..++|+-
T Consensus 78 lq~H~~R~E~W~Vv~G~a~v~~~~~~~~~~~g~sv~Ip~g~~H~i~n~g-~~~L~~IEVq 136 (151)
T PF01050_consen 78 LQYHHHRSEHWTVVSGTAEVTLDDEEFTLKEGDSVYIPRGAKHRIENPG-KTPLEIIEVQ 136 (151)
T ss_pred eeeecccccEEEEEeCeEEEEECCEEEEEcCCCEEEECCCCEEEEECCC-CcCcEEEEEe
Confidence 5577778999999999999999999999999999999999999997533 3347788874
No 27
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=94.12 E-value=0.16 Score=49.21 Aligned_cols=69 Identities=20% Similarity=0.278 Sum_probs=48.0
Q ss_pred CCCEEEEEEeCcEEEEeec--e---eeeecCCcEEEEcceeEEEEECC-CCCeeEEEEEEcCCeeeeCCCCCCCCCCC
Q 011768 170 DGDFLVVPQKGRLWIATEC--G---KLEVSPGEIAVLPQGFRFAVSLP-DGPSRGYIAEIFGTHFQLPDLGPIGANGL 241 (478)
Q Consensus 170 DGD~Li~pq~G~l~l~TEf--G---~L~v~pGd~vVIPRGi~frv~l~-~g~~rgyi~E~~~~~~~LPelGpiG~ngl 241 (478)
+-+|++++.+|++.+..+- | ...++|||+++||+|+.+++.-. +.+.+.+. ++-.. .=.+.|+|.++|-
T Consensus 96 ~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~iN~G~epl~fl~--v~p~~-~~~dY~~i~~~g~ 170 (191)
T PRK04190 96 DRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAHRSVNTGDEPLVFLA--CYPAD-AGHDYGTIAEKGF 170 (191)
T ss_pred CCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcEEeEECCCCCEEEEE--EEcCC-cccccHHHHhcCC
Confidence 5679999999999887653 3 47899999999999999998643 33544443 43222 2235667665543
No 28
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=93.60 E-value=0.56 Score=50.64 Aligned_cols=57 Identities=12% Similarity=0.061 Sum_probs=46.6
Q ss_pred eecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECC-CCCeeEEEEE
Q 011768 166 FCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLP-DGPSRGYIAE 222 (478)
Q Consensus 166 f~NaDGD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~-~g~~rgyi~E 222 (478)
-+....+|.+++.+|++.++.+--...+++||.+.||+|+.+++.-. +.+++.+.+.
T Consensus 392 h~H~~~~E~~~Vl~G~~~v~~dg~~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~ 449 (468)
T TIGR01479 392 QMHHHRAEHWIVVSGTARVTIGDETLLLTENESTYIPLGVIHRLENPGKIPLELIEVQ 449 (468)
T ss_pred cccCCCceEEEEEeeEEEEEECCEEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEE
Confidence 34555678889999999999999999999999999999999999753 3455554443
No 29
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=92.74 E-value=1.1 Score=40.49 Aligned_cols=79 Identities=14% Similarity=0.045 Sum_probs=54.4
Q ss_pred eeeeeecCCcccccccEEE--EEEeCCCCCCcceecCCCCEEEEEEeCcEEEE-ee-ceeeeecCCcEEEEcceeEEEEE
Q 011768 135 LYTICGAGSSFLRHGYAIH--MYTANKSMDNCAFCNADGDFLVVPQKGRLWIA-TE-CGKLEVSPGEIAVLPQGFRFAVS 210 (478)
Q Consensus 135 l~tl~g~gD~~~~~G~ai~--~y~~~~sM~~~~f~NaDGD~Li~pq~G~l~l~-TE-fG~L~v~pGd~vVIPRGi~frv~ 210 (478)
.+++..+.. .++.+. .+...++... .+.+. ++.+++.+|++.++ .+ --...+.+||.++||.+..+++.
T Consensus 24 krll~~~~~----~~~~~~~~~l~pG~~~~~-h~h~~--~E~~yVL~G~~~~~~i~~g~~~~L~aGD~i~~~~~~~H~~~ 96 (125)
T PRK13290 24 RRLLLKDDG----MGFSFHETTIYAGTETHL-HYKNH--LEAVYCIEGEGEVEDLATGEVHPIRPGTMYALDKHDRHYLR 96 (125)
T ss_pred EEEEEecCC----CCEEEEEEEECCCCcccc-eeCCC--EEEEEEEeCEEEEEEcCCCEEEEeCCCeEEEECCCCcEEEE
Confidence 555554332 234444 4445544432 33333 48999999999999 75 77889999999999999999998
Q ss_pred CCCCCeeEEEE
Q 011768 211 LPDGPSRGYIA 221 (478)
Q Consensus 211 l~~g~~rgyi~ 221 (478)
-. .+++.+.+
T Consensus 97 N~-e~~~~l~v 106 (125)
T PRK13290 97 AG-EDMRLVCV 106 (125)
T ss_pred cC-CCEEEEEE
Confidence 65 56665444
No 30
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=92.36 E-value=1.1 Score=40.42 Aligned_cols=69 Identities=19% Similarity=0.316 Sum_probs=54.9
Q ss_pred cEEEEEEeCCCCCCcceecCCCCEEEEEEeCcEEEEeecee-eeecCCcEEEEcceeEEEEECCCCCeeEEEE
Q 011768 150 YAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGK-LEVSPGEIAVLPQGFRFAVSLPDGPSRGYIA 221 (478)
Q Consensus 150 ~ai~~y~~~~sM~~~~f~NaDGD~Li~pq~G~l~l~TEfG~-L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~ 221 (478)
+...+|.|+..- +=.+-+.+|.-.+.+|...|..|-|. +++++||-+|+|.|.+=.++..+.--+-|++
T Consensus 45 ~~~GiWe~TpG~---~r~~y~~~E~chil~G~v~~T~d~Ge~v~~~aGD~~~~~~G~~g~W~V~EtvrK~Yv~ 114 (116)
T COG3450 45 VETGIWECTPGK---FRVTYDEDEFCHILEGRVEVTPDGGEPVEVRAGDSFVFPAGFKGTWEVLETVRKHYVI 114 (116)
T ss_pred eeEeEEEecCcc---ceEEcccceEEEEEeeEEEEECCCCeEEEEcCCCEEEECCCCeEEEEEeeeeEEEEEE
Confidence 344788888653 44566779999999999999999996 6799999999999998777765655566665
No 31
>PLN00212 glutelin; Provisional
Probab=91.07 E-value=1.4 Score=48.49 Aligned_cols=47 Identities=13% Similarity=0.227 Sum_probs=37.0
Q ss_pred cCCCCCCCCCCCCCcccccceeeeccccc-------cc---CCcCCCeeeeecCCCCC
Q 011768 343 VAEHTFRPPYYHRNCMSEFMGLIRGGYEA-------KA---DGFLPGGASLHSCMTPH 390 (478)
Q Consensus 343 ~~e~TfRpPYyHrNv~sE~mg~i~G~y~a-------r~---~gf~pG~~SLHp~g~pH 390 (478)
-.++++-+|.+|.| ..|+++.+.|.-.. ++ ..+.+|-+-.-|.+.+|
T Consensus 355 L~~gam~~PHwn~n-A~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~GdvfVVPqg~~v 411 (493)
T PLN00212 355 LYQNALLSPFWNVN-AHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQLLIIPQHYAV 411 (493)
T ss_pred EcCCcccCCeecCC-CCEEEEEeecceEEEEEcCCCCEEEEEEEcCCCEEEECCCCeE
Confidence 35899999999999 67999999987321 11 24789999999999988
No 32
>PRK11171 hypothetical protein; Provisional
Probab=90.98 E-value=1.9 Score=43.41 Aligned_cols=62 Identities=15% Similarity=0.011 Sum_probs=53.1
Q ss_pred ecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEEC-CCCCeeEEEEEEcCCee
Q 011768 167 CNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSL-PDGPSRGYIAEIFGTHF 228 (478)
Q Consensus 167 ~NaDGD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l-~~g~~rgyi~E~~~~~~ 228 (478)
.....++.|++++|+|.+.-+--...|++||.+.+|-+....+.- .+.++|-++.-..+.+.
T Consensus 201 ~~~~~ee~i~Vl~G~~~~~~~~~~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~~k~~nr~~ 263 (266)
T PRK11171 201 ETHVMEHGLYVLEGKGVYRLNNDWVEVEAGDFIWMRAYCPQACYAGGPGPFRYLLYKDVNRHP 263 (266)
T ss_pred cCCCceEEEEEEeCEEEEEECCEEEEeCCCCEEEECCCCCEEEECCCCCcEEEEEEcccccCc
Confidence 468888999999999999999889999999999999999999974 34588888877665543
No 33
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=90.92 E-value=0.44 Score=46.64 Aligned_cols=51 Identities=8% Similarity=-0.031 Sum_probs=42.7
Q ss_pred CCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEE
Q 011768 171 GDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAE 222 (478)
Q Consensus 171 GD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E 222 (478)
.-+|+++.+|.+.+..+--...+++||+++||.|+.+++.... ...++++-
T Consensus 44 ~~~l~~~~~G~~~~~~~~~~~~l~~g~~~ii~~~~~H~~~~~~-~~~~~~i~ 94 (287)
T TIGR02297 44 YYQLHYLTEGSIALQLDEHEYSEYAPCFFLTPPSVPHGFVTDL-DADGHVLT 94 (287)
T ss_pred ceeEEEEeeCceEEEECCEEEEecCCeEEEeCCCCccccccCC-CcceEEEE
Confidence 4689999999999999999999999999999999999987533 33455444
No 34
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=90.87 E-value=1.1 Score=45.96 Aligned_cols=66 Identities=11% Similarity=0.210 Sum_probs=51.9
Q ss_pred ceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeE-EEEECC--CCCeeEEEEEEcCCeeeeC
Q 011768 165 AFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFR-FAVSLP--DGPSRGYIAEIFGTHFQLP 231 (478)
Q Consensus 165 ~f~NaDGD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~-frv~l~--~g~~rgyi~E~~~~~~~LP 231 (478)
.|.-.+=|..|++..|.+.|+.+--.-.+.+.|-+.||+|.+ +.+.-. ..+++.|||-+. +|=.+|
T Consensus 68 ~~fl~rrE~giV~lgG~~~V~vdG~~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~sAP-A~~~~P 136 (276)
T PRK00924 68 SYFLERRELGIINIGGAGTVTVDGETYELGHRDALYVGKGAKEVVFASADAANPAKFYLNSAP-AHTTYP 136 (276)
T ss_pred eeecCCcEEEEEEccceEEEEECCEEEecCCCcEEEECCCCcEEEEEecCCCCCcEEEEEccc-cCCCCC
Confidence 456666778999999999999877777888999999999977 566432 347999999987 344444
No 35
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=90.80 E-value=0.68 Score=38.75 Aligned_cols=48 Identities=17% Similarity=0.145 Sum_probs=36.2
Q ss_pred cCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEE
Q 011768 168 NADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYI 220 (478)
Q Consensus 168 NaDGD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi 220 (478)
..+|.+.+|+.+|++.. +-| .+.+|||+..|.|..+++.-.+ .+..||
T Consensus 41 ~H~g~ee~~VLeG~~~d--~~~--~~~~G~~~~~p~g~~h~~~s~~-gc~~~v 88 (91)
T PF12973_consen 41 RHPGGEEILVLEGELSD--GDG--RYGAGDWLRLPPGSSHTPRSDE-GCLILV 88 (91)
T ss_dssp EESS-EEEEEEECEEEE--TTC--EEETTEEEEE-TTEEEEEEESS-CEEEEE
T ss_pred CCCCcEEEEEEEEEEEE--CCc--cCCCCeEEEeCCCCccccCcCC-CEEEEE
Confidence 36788888999999985 335 5799999999999999998643 466665
No 36
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=90.57 E-value=1.7 Score=47.55 Aligned_cols=59 Identities=12% Similarity=0.019 Sum_probs=48.4
Q ss_pred ceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEEc
Q 011768 165 AFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIF 224 (478)
Q Consensus 165 ~f~NaDGD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~ 224 (478)
.-+...++|.+++.+|++.++-+-=...+.+||.+.||.|+.+|+.-++ ....-++|+.
T Consensus 400 ~~~H~~~~E~~~VlsG~~~v~idg~~~~L~~GDSi~ip~g~~H~~~N~g-~~~l~iI~V~ 458 (478)
T PRK15460 400 VQMHHHRAEHWVVVAGTAKVTIDGDIKLLGENESIYIPLGATHCLENPG-KIPLDLIEVR 458 (478)
T ss_pred cCCCCCCceEEEEEeeEEEEEECCEEEEecCCCEEEECCCCcEEEEcCC-CCCEEEEEEE
Confidence 3466688899999999999999888899999999999999999997532 3345566664
No 37
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=90.51 E-value=1.4 Score=39.05 Aligned_cols=54 Identities=24% Similarity=0.424 Sum_probs=44.0
Q ss_pred CCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEEc
Q 011768 170 DGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIF 224 (478)
Q Consensus 170 DGD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~ 224 (478)
|.=.|+++.+|+..++..-..+.+.|||+++++-+-.|++.. .+..+.+++-+.
T Consensus 54 ~~~~l~~~~~G~~~~~~~g~~~~~~pg~~~l~d~~~~~~~~~-~~~~~~~~l~ip 107 (172)
T PF14525_consen 54 DHYLLVLPLSGSARIEQGGREVELAPGDVVLLDPGQPYRLEF-SAGCRQLSLRIP 107 (172)
T ss_pred CEEEEEEEccCCEEEEECCEEEEEcCCeEEEEcCCCCEEEEE-CCCccEEEEEEC
Confidence 344678889999999999889999999999999999999987 335566655554
No 38
>PF12852 Cupin_6: Cupin
Probab=90.07 E-value=0.48 Score=44.10 Aligned_cols=40 Identities=28% Similarity=0.605 Sum_probs=35.5
Q ss_pred CCEEEEEEeCcEEEEeec-e-eeeecCCcEEEEcceeEEEEE
Q 011768 171 GDFLVVPQKGRLWIATEC-G-KLEVSPGEIAVLPQGFRFAVS 210 (478)
Q Consensus 171 GD~Li~pq~G~l~l~TEf-G-~L~v~pGd~vVIPRGi~frv~ 210 (478)
+=.++++.+|+..|+.+- + .+.+++||+|++|+|..|++.
T Consensus 35 ~~~fh~V~~G~~~l~~~~~~~~~~L~~GDivllp~g~~H~l~ 76 (186)
T PF12852_consen 35 GASFHVVLRGSCWLRVPGGGEPIRLEAGDIVLLPRGTAHVLS 76 (186)
T ss_pred ceEEEEEECCeEEEEEcCCCCeEEecCCCEEEEcCCCCeEeC
Confidence 467899999999999665 3 699999999999999999995
No 39
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=89.55 E-value=1.2 Score=44.02 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=41.0
Q ss_pred ecCCCCEEEEEEeCcEEE--Eeecee---eeecCCcEEEEcceeEEEEECCCCCeeEEEEEEc
Q 011768 167 CNADGDFLVVPQKGRLWI--ATECGK---LEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIF 224 (478)
Q Consensus 167 ~NaDGD~Li~pq~G~l~l--~TEfG~---L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~ 224 (478)
-|+|.+|+++.+.|+++. +..-|. +.+++||.|+||+|--+++.= .|..-..++++|
T Consensus 99 p~ade~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~iyVPp~~gH~t~N-~Gd~pLvf~~v~ 160 (209)
T COG2140 99 PNADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVIYVPPGYGHYTIN-TGDEPLVFLNVY 160 (209)
T ss_pred CCCCcccEEEEEeccEEEEEEcCCCcEEEEEecCCcEEEeCCCcceEeec-CCCCCEEEEEEE
Confidence 567777899999997764 455554 458999999999999997753 333335555555
No 40
>PRK13502 transcriptional activator RhaR; Provisional
Probab=89.43 E-value=0.84 Score=44.72 Aligned_cols=46 Identities=9% Similarity=0.028 Sum_probs=41.2
Q ss_pred cCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCC
Q 011768 168 NADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPD 213 (478)
Q Consensus 168 NaDGD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~ 213 (478)
..|-=+|+++.+|++.++.+--...+.|||+++||.|..+++...+
T Consensus 35 ~h~~~~l~~v~~G~~~~~i~~~~~~l~~g~l~li~~~~~H~~~~~~ 80 (282)
T PRK13502 35 THEFCELVMVWRGNGLHVLNERPYRITRGDLFYIRAEDKHSYTSVN 80 (282)
T ss_pred ccceEEEEEEecCcEEEEECCEEEeecCCcEEEECCCCcccccccC
Confidence 3466799999999999999999999999999999999999987533
No 41
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=89.23 E-value=1.4 Score=43.55 Aligned_cols=67 Identities=19% Similarity=0.255 Sum_probs=52.7
Q ss_pred CcccceeeeeecCCcccccccEEEEEEeCCCCCCcceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEE
Q 011768 130 DFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAV 209 (478)
Q Consensus 130 Dfv~gl~tl~g~gD~~~~~G~ai~~y~~~~sM~~~~f~NaDGD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv 209 (478)
..|.|+.++.-.|.... +++++.. | +|-+|.++.+|++.+.+.-+...+++||+++||.|+.+++
T Consensus 23 ~~~~~~~~~~~~~~~d~------~~~r~~~-~--------~~~~i~~~~~G~~~~~~~~~~~~~~~g~~i~i~p~~~h~~ 87 (290)
T PRK10572 23 HLVAGLTPIEAGGYLDF------FIDRPLG-M--------KGYILNLTIRGQGVIFNGGRAFVCRPGDLLLFPPGEIHHY 87 (290)
T ss_pred eeeecccccccCCccce------eeecCCC-c--------cceEEEEEEeccEEEecCCeeEecCCCCEEEECCCCceee
Confidence 45677777765554444 6665543 3 3457889999999999999999999999999999999987
Q ss_pred EC
Q 011768 210 SL 211 (478)
Q Consensus 210 ~l 211 (478)
..
T Consensus 88 ~~ 89 (290)
T PRK10572 88 GR 89 (290)
T ss_pred cc
Confidence 65
No 42
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=89.10 E-value=3.8 Score=35.00 Aligned_cols=57 Identities=12% Similarity=0.254 Sum_probs=41.4
Q ss_pred ceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEE-CCCCCeeEEEE
Q 011768 165 AFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVS-LPDGPSRGYIA 221 (478)
Q Consensus 165 ~f~NaDGD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~-l~~g~~rgyi~ 221 (478)
.-.+.+--+.+++++|.+.+.=.-=...+.+|+...||||=.|.+. +-+.+++.+.+
T Consensus 27 ~k~s~~~~~vF~V~~G~v~Vti~~~~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~LfF~ 84 (85)
T PF11699_consen 27 PKNSRDNTMVFYVIKGKVEVTIHETSFVVTKGGSFQVPRGNYYSIKNIGNEEAKLFFV 84 (85)
T ss_dssp EEE--SEEEEEEEEESEEEEEETTEEEEEETT-EEEE-TT-EEEEEE-SSS-EEEEEE
T ss_pred CcccCCcEEEEEEEeCEEEEEEcCcEEEEeCCCEEEECCCCEEEEEECCCCcEEEEEe
Confidence 3345556688899999999997777888999999999999999995 45668887754
No 43
>PRK13500 transcriptional activator RhaR; Provisional
Probab=87.56 E-value=1.3 Score=44.78 Aligned_cols=45 Identities=11% Similarity=0.043 Sum_probs=41.8
Q ss_pred ecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEEC
Q 011768 167 CNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSL 211 (478)
Q Consensus 167 ~NaDGD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l 211 (478)
-..|.-+|+++.+|++.+..+.....+.+||+++||.|..+++..
T Consensus 64 H~H~~~el~~v~~G~g~~~v~~~~~~l~~Gdl~~I~~~~~H~~~~ 108 (312)
T PRK13500 64 HTHDFCELVIVWRGNGLHVLNDRPYRITRGDLFYIHADDKHSYAS 108 (312)
T ss_pred cccceEEEEEEEcCeEEEEECCEEEeecCCeEEEECCCCeecccc
Confidence 456788999999999999999999999999999999999999875
No 44
>PRK13501 transcriptional activator RhaR; Provisional
Probab=87.55 E-value=1.2 Score=44.21 Aligned_cols=45 Identities=7% Similarity=-0.023 Sum_probs=41.6
Q ss_pred ecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEEC
Q 011768 167 CNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSL 211 (478)
Q Consensus 167 ~NaDGD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l 211 (478)
--.|-=+|+++.+|++.+..+.....+.+||+++||.|..+.+..
T Consensus 34 H~H~~~ei~~i~~G~~~~~i~~~~~~l~~g~~~~I~p~~~H~~~~ 78 (290)
T PRK13501 34 HTHQFCEIVIVWRGNGLHVLNDHPYRITCGDVFYIQAADHHSYES 78 (290)
T ss_pred ccccceeEEEEecCceEEEECCeeeeecCCeEEEEcCCCcccccc
Confidence 345888999999999999999999999999999999999999875
No 45
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=87.47 E-value=0.99 Score=43.54 Aligned_cols=42 Identities=14% Similarity=0.293 Sum_probs=30.4
Q ss_pred CCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCCC
Q 011768 170 DGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGP 215 (478)
Q Consensus 170 DGD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~ 215 (478)
+|+.++.+|.+.+.+. .|++.+||++.||.||.+++.+...+
T Consensus 103 aG~GiF~v~~~d~~~~----~i~c~~gDLI~vP~gi~HwFtlt~~~ 144 (181)
T COG1791 103 AGEGIFDVHSPDGKVY----QIRCEKGDLISVPPGIYHWFTLTESP 144 (181)
T ss_pred ecceEEEEECCCCcEE----EEEEccCCEEecCCCceEEEEccCCC
Confidence 4444555555444333 68899999999999999999996653
No 46
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=86.88 E-value=2.2 Score=40.59 Aligned_cols=75 Identities=16% Similarity=0.185 Sum_probs=52.6
Q ss_pred ccccEEEEEEeCCCCCCcceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcce--eEEEEECCCCCeeEEEEEE
Q 011768 147 RHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQG--FRFAVSLPDGPSRGYIAEI 223 (478)
Q Consensus 147 ~~G~ai~~y~~~~sM~~~~f~NaDGD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRG--i~frv~l~~g~~rgyi~E~ 223 (478)
+-|+-+-.......- ...=...-.||++++.+|++.+...-|.-.|+|||.+=-|.| +-+.+.= .+..-.-.+|+
T Consensus 41 ~fGvn~~~v~PG~~S-s~~H~Hs~edEfv~ILeGE~~l~~d~~e~~lrpGD~~gFpAG~~~aHhliN-~s~~~~~yL~v 117 (161)
T COG3837 41 RFGVNLEIVEPGGES-SLRHWHSAEDEFVYILEGEGTLREDGGETRLRPGDSAGFPAGVGNAHHLIN-RSDVILRYLEV 117 (161)
T ss_pred hcccceEEeCCCCcc-ccccccccCceEEEEEcCceEEEECCeeEEecCCceeeccCCCcceeEEee-cCCceEEEEEe
Confidence 345555555555431 223356678999999999999999999999999999999999 6665542 22333444444
No 47
>PRK13503 transcriptional activator RhaS; Provisional
Probab=85.85 E-value=1.1 Score=43.42 Aligned_cols=47 Identities=15% Similarity=0.087 Sum_probs=42.2
Q ss_pred ecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCC
Q 011768 167 CNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPD 213 (478)
Q Consensus 167 ~NaDGD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~ 213 (478)
...|.-+|+++.+|++.+..+-....+.+||+++||.|..+.+...+
T Consensus 31 H~H~~~ei~~v~~G~~~~~i~~~~~~l~~g~~~~i~~~~~h~~~~~~ 77 (278)
T PRK13503 31 HHHDFHEIVIVEHGTGIHVFNGQPYTLSGGTVCFVRDHDRHLYEHTD 77 (278)
T ss_pred cccCceeEEEEecCceeeEecCCcccccCCcEEEECCCccchhhhcc
Confidence 45688899999999999999999999999999999999998876533
No 48
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=85.67 E-value=2.8 Score=42.43 Aligned_cols=62 Identities=15% Similarity=0.117 Sum_probs=48.7
Q ss_pred ccEEEEEEeCCCCCCcceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCC
Q 011768 149 GYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPD 213 (478)
Q Consensus 149 G~ai~~y~~~~sM~~~~f~NaDGD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~ 213 (478)
|++|-....+ +|. .+--.+-=||+++.+|++.+...-....+.|||+++|+-|+.|++...+
T Consensus 27 ~~~~~~~~~~-~m~--~~HwH~e~Ei~yv~~G~~~~~i~g~~~~l~~Gd~ili~s~~~H~~~~~~ 88 (302)
T PRK10371 27 RLEIEFRPPH-IMP--TSHWHGQVEVNVPFDGDVEYLINNEKVQINQGHITLFWACTPHQLTDPG 88 (302)
T ss_pred eeEEEeeCCC-CCC--CCCccccEEEEEecCCcEEEEECCEEEEEcCCcEEEEecCCcccccccC
Confidence 4555555554 563 3344566678899999999999999999999999999999999987633
No 49
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=84.42 E-value=3.4 Score=39.08 Aligned_cols=56 Identities=18% Similarity=0.244 Sum_probs=34.1
Q ss_pred CcceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEEc
Q 011768 163 NCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIF 224 (478)
Q Consensus 163 ~~~f~NaDGD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~ 224 (478)
.++|+--.||+++=+++. +. +=.+.+++||+-++|.++.++=.-. ..+.|+|||-.
T Consensus 54 eE~FyQ~kG~m~Lkv~e~-g~----~kdi~I~EGe~fLLP~~vpHsP~R~-~~tiGLViEr~ 109 (151)
T PF06052_consen 54 EEFFYQLKGDMCLKVVED-GK----FKDIPIREGEMFLLPANVPHSPQRP-ADTIGLVIERK 109 (151)
T ss_dssp -EEEEEEES-EEEEEEET-TE----EEEEEE-TTEEEEE-TT--EEEEE--TT-EEEEEEE-
T ss_pred ceEEEEEeCcEEEEEEeC-Cc----eEEEEeCCCcEEecCCCCCCCCcCC-CCcEEEEEEec
Confidence 346666666666655552 12 2278899999999999999987654 36899999964
No 50
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=83.12 E-value=2.9 Score=42.37 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=39.4
Q ss_pred cCCCCEEEEEEeCcEEEEee---ceeeeec------CCcEEEEcceeEEEEECCCCCeeEEEEEEc
Q 011768 168 NADGDFLVVPQKGRLWIATE---CGKLEVS------PGEIAVLPQGFRFAVSLPDGPSRGYIAEIF 224 (478)
Q Consensus 168 NaDGD~Li~pq~G~l~l~TE---fG~L~v~------pGd~vVIPRGi~frv~l~~g~~rgyi~E~~ 224 (478)
-.+-|..+++..|.++|+.+ +-.|--| +.|.+.||+|.+++|... +.++.||+-+.
T Consensus 44 ~~~~E~~vv~l~G~~~v~~~g~~~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~-~~ae~~~~sap 108 (261)
T PF04962_consen 44 LERRELGVVNLGGKATVTVDGEEFYELGGRESVFDGPPDALYVPRGTKVVIFAS-TDAEFAVCSAP 108 (261)
T ss_dssp CCSEEEEEEEESSSEEEEETTEEEEEE-TTSSGGGS--EEEEE-TT--EEEEES-STEEEEEEEEE
T ss_pred CCCcEEEEEEeCCEEEEEeCCceEEEecccccccCCCCcEEEeCCCCeEEEEEc-CCCEEEEEccc
Confidence 34457788999999999984 4444443 449999999999999874 45999999886
No 51
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=82.88 E-value=2.4 Score=40.80 Aligned_cols=54 Identities=17% Similarity=0.307 Sum_probs=40.0
Q ss_pred CCCCEEEEEEeCcEEE--Eeece---eeeecCCcEEEEcceeEEEEECCCC----CeeEEEEE
Q 011768 169 ADGDFLVVPQKGRLWI--ATECG---KLEVSPGEIAVLPQGFRFAVSLPDG----PSRGYIAE 222 (478)
Q Consensus 169 aDGD~Li~pq~G~l~l--~TEfG---~L~v~pGd~vVIPRGi~frv~l~~g----~~rgyi~E 222 (478)
.+-|++-++.+|++-+ ++.-+ ++-|+.||.+|||.||-+|+++... ..|.|+=|
T Consensus 91 h~deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~~n~vkamRlF~~~ 153 (179)
T KOG2107|consen 91 HEDEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTPSNYVKAMRLFVGE 153 (179)
T ss_pred CchhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCchHHHHHHHHhcCC
Confidence 5678899999998754 44333 5679999999999999999987433 34555444
No 52
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=82.78 E-value=3.2 Score=41.06 Aligned_cols=42 Identities=14% Similarity=0.247 Sum_probs=37.3
Q ss_pred CEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCC
Q 011768 172 DFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPD 213 (478)
Q Consensus 172 D~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~ 213 (478)
-+|+++..|.+.++.+-....+.|||+++|+.+..|++...+
T Consensus 72 ~~l~~~~~G~~~~~~~g~~~~l~~G~~~l~~~~~p~~~~~~~ 113 (302)
T PRK09685 72 FFTVFQLSGHAIIEQDDRQVQLAAGDITLIDASRPCSIYPQG 113 (302)
T ss_pred EEEEEEecceEEEEECCeEEEEcCCCEEEEECCCCcEeecCC
Confidence 347788999999999999999999999999999999987633
No 53
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=82.74 E-value=6.4 Score=36.35 Aligned_cols=87 Identities=24% Similarity=0.363 Sum_probs=61.4
Q ss_pred cccEEEEEEeCCCCCCcceecCCCCEEEEEEeCcEEEEeece-----eeeecCCcEEEEcceeEEE-EECCCCCeeEEEE
Q 011768 148 HGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECG-----KLEVSPGEIAVLPQGFRFA-VSLPDGPSRGYIA 221 (478)
Q Consensus 148 ~G~ai~~y~~~~sM~~~~f~NaDGD~Li~pq~G~l~l~TEfG-----~L~v~pGd~vVIPRGi~fr-v~l~~g~~rgyi~ 221 (478)
+|+-.|+.+....-.-++--...=+-.|++..|+.+ |-+| ..+++|||+++||.|+-++ .++.+.++...|.
T Consensus 44 s~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah--~w~G~rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vIa 121 (142)
T COG4101 44 SGICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAH--TWYGNRLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVIA 121 (142)
T ss_pred ceeeEEEEeeCCCccccccccccccEEEEEEeceee--eeeccceeeeEEecCCCeEEcCCCCCCcccccCCCCeEEEEE
Confidence 466677777665544446667777889999998765 4555 3569999999999999885 4666777777766
Q ss_pred EEc----CCeeeeCCCCCC
Q 011768 222 EIF----GTHFQLPDLGPI 236 (478)
Q Consensus 222 E~~----~~~~~LPelGpi 236 (478)
-+- .+..-||+|.+|
T Consensus 122 RsDp~~~Esv~~lpelD~l 140 (142)
T COG4101 122 RSDPNPQESVQLLPELDPL 140 (142)
T ss_pred ccCCCCCcCcEEecccccc
Confidence 431 134667777665
No 54
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=82.33 E-value=14 Score=37.15 Aligned_cols=77 Identities=12% Similarity=0.026 Sum_probs=52.2
Q ss_pred ccEEEEE--EeCCCCCCcceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECC-CCCeeEEEEEEcC
Q 011768 149 GYAIHMY--TANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLP-DGPSRGYIAEIFG 225 (478)
Q Consensus 149 G~ai~~y--~~~~sM~~~~f~NaDGD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~-~g~~rgyi~E~~~ 225 (478)
++.+++. ....+++ +--...=++.+++.+|.+.+.=.--..+|.+||++.||.++...+.-. +++.|-++-=-.+
T Consensus 178 ~~~~~~~~~~PG~~~~--~~~~H~~eh~~yiL~G~G~~~~~g~~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~ykd~n 255 (260)
T TIGR03214 178 DMNVHILSFEPGASHP--YIETHVMEHGLYVLEGKGVYNLDNNWVPVEAGDYIWMGAYCPQACYAGGRGEFRYLLYKDMN 255 (260)
T ss_pred CcEEEEEEECCCcccC--CcccccceeEEEEEeceEEEEECCEEEEecCCCEEEECCCCCEEEEecCCCcEEEEEEcccc
Confidence 4444444 4444542 113333456779999999998887788899999999999999988653 3466666544433
Q ss_pred Ce
Q 011768 226 TH 227 (478)
Q Consensus 226 ~~ 227 (478)
.+
T Consensus 256 r~ 257 (260)
T TIGR03214 256 RH 257 (260)
T ss_pred CC
Confidence 33
No 55
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=80.29 E-value=3.9 Score=40.04 Aligned_cols=72 Identities=13% Similarity=0.152 Sum_probs=50.2
Q ss_pred cEEEEEEeCCCCCCcceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCC-CeeEEEEEEcCCee
Q 011768 150 YAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDG-PSRGYIAEIFGTHF 228 (478)
Q Consensus 150 ~ai~~y~~~~sM~~~~f~NaDGD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g-~~rgyi~E~~~~~~ 228 (478)
+.+.-+.++..++. -...|.|++++.+|++ .-|.| .+.+||++.+|-|..++....++ .+..|++ ..+++
T Consensus 129 v~Ll~i~pG~~~p~---H~H~G~E~tlVLeG~f--~de~g--~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v--~dapl 199 (215)
T TIGR02451 129 VRLLYIEAGQSIPQ---HTHKGFELTLVLHGAF--SDETG--VYGVGDFEEADGSVQHQPRTVSGGDCLCLAV--LDAPL 199 (215)
T ss_pred EEEEEECCCCccCC---CcCCCcEEEEEEEEEE--EcCCC--ccCCCeEEECCCCCCcCcccCCCCCeEEEEE--ecCCc
Confidence 45555566666643 4458999999999995 45555 58999999999999999876443 4554443 33444
Q ss_pred ee
Q 011768 229 QL 230 (478)
Q Consensus 229 ~L 230 (478)
++
T Consensus 200 ~f 201 (215)
T TIGR02451 200 RF 201 (215)
T ss_pred cc
Confidence 44
No 56
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=75.20 E-value=12 Score=39.56 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=39.4
Q ss_pred eecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEEC
Q 011768 166 FCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSL 211 (478)
Q Consensus 166 f~NaDGD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l 211 (478)
-.++-+-.++++.+|+|..+..-..++.++||++|||--..++...
T Consensus 265 ~~r~T~s~Vf~VieG~G~s~ig~~~~~W~~gD~f~vPsW~~~~h~a 310 (335)
T TIGR02272 265 TYRSTDATVFCVVEGRGQVRIGDAVFRFSPKDVFVVPSWHPVRFEA 310 (335)
T ss_pred CccccccEEEEEEeCeEEEEECCEEEEecCCCEEEECCCCcEeccc
Confidence 3555677899999999999999999999999999999886666544
No 57
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=74.59 E-value=6.2 Score=42.28 Aligned_cols=55 Identities=25% Similarity=0.429 Sum_probs=48.2
Q ss_pred ceecCCCCEEEEEEeCcEEEEee-ceeeeecCCcEEEEcceeEEEEECCCCCeeEE
Q 011768 165 AFCNADGDFLVVPQKGRLWIATE-CGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGY 219 (478)
Q Consensus 165 ~f~NaDGD~Li~pq~G~l~l~TE-fG~L~v~pGd~vVIPRGi~frv~l~~g~~rgy 219 (478)
.|.-.||--++++.+|++.++|+ -+.+.|.+||++.||.-.--++...+++-.+|
T Consensus 347 ~~~~~~~~SIllv~~G~g~l~~~t~~~~~v~rG~V~fI~a~~~i~~~~~sd~~~~y 402 (411)
T KOG2757|consen 347 KFPGVDGPSILLVLKGSGILKTDTDSKILVNRGDVLFIPANHPIHLSSSSDPFLGY 402 (411)
T ss_pred EeecCCCceEEEEEecceEEecCCCCceeeccCcEEEEcCCCCceeeccCcceeee
Confidence 78889999999999999999999 99999999999999998877777766664444
No 58
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=74.34 E-value=4.6 Score=38.03 Aligned_cols=43 Identities=19% Similarity=0.359 Sum_probs=35.3
Q ss_pred ecCCCCEEEEEEeCcEEEEe--ece-eeeecCCcEEEEcceeEEEE
Q 011768 167 CNADGDFLVVPQKGRLWIAT--ECG-KLEVSPGEIAVLPQGFRFAV 209 (478)
Q Consensus 167 ~NaDGD~Li~pq~G~l~l~T--EfG-~L~v~pGd~vVIPRGi~frv 209 (478)
|.+...|++.+.+|...|+- +-| .|+|..||.++||.|+-++=
T Consensus 60 YHs~aHEVl~vlrgqA~l~iGG~~G~el~v~~GDvlliPAGvGH~r 105 (163)
T COG4297 60 YHSGAHEVLGVLRGQAGLQIGGADGQELEVGEGDVLLIPAGVGHCR 105 (163)
T ss_pred ccCCcceEEEEecceeEEEecCCCCceeeecCCCEEEEecCccccc
Confidence 66778899999999887762 333 68999999999999998854
No 59
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=74.15 E-value=15 Score=37.46 Aligned_cols=60 Identities=13% Similarity=0.273 Sum_probs=46.0
Q ss_pred cccEEEEEEeCCCCCCcceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEccee-EEEEE
Q 011768 148 HGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGF-RFAVS 210 (478)
Q Consensus 148 ~G~ai~~y~~~~sM~~~~f~NaDGD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi-~frv~ 210 (478)
.-+++..+..+..+ .+.+.++=.++++.+|++.|...-+.+.+++||.++||.+. .+.++
T Consensus 233 ~~F~~~~~~~~~~~---~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~ipa~~~~~~i~ 293 (302)
T TIGR00218 233 EYFSVYKWDISGKA---EFIQQQSALILSVLEGSGRIKSGGKTLPLKKGESFFIPAHLGPFTIE 293 (302)
T ss_pred CCeEEEEEEeCCce---eeccCCCcEEEEEEcceEEEEECCEEEEEecccEEEEccCCccEEEE
Confidence 34566666665442 23455677788899999999988888999999999999998 57773
No 60
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=73.47 E-value=28 Score=33.39 Aligned_cols=91 Identities=13% Similarity=0.036 Sum_probs=49.3
Q ss_pred ccceeeeeecCCc-ccccccEEEEEEeCCCCCCcceecCCCCEEEEEEeCcEEEEeece---------eeeecCCcEEEE
Q 011768 132 IDGLYTICGAGSS-FLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECG---------KLEVSPGEIAVL 201 (478)
Q Consensus 132 v~gl~tl~g~gD~-~~~~G~ai~~y~~~~sM~~~~f~NaDGD~Li~pq~G~l~l~TEfG---------~L~v~pGd~vVI 201 (478)
..||.-+..||.. .-..-+.|.+.+....- ..----...+|++|+++|+|.+.=..- .+.+.|++...|
T Consensus 25 r~GLsH~TvAGa~~hGmkevEVwlQTfAPG~-~TPiHRHsCEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~I 103 (167)
T PF02041_consen 25 RPGLSHITVAGALLHGMKEVEVWLQTFAPGS-ATPIHRHSCEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHI 103 (167)
T ss_dssp -TTEEEEEEE-HHHH--SSEEEEEEEE-TT--B--EEEESS-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE
T ss_pred CCCcceEEeehhhhcCceeeeEEeeeecCCC-CCCCccccccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEe
Confidence 4688888888864 22334455555544322 123345678999999999999886533 267789999999
Q ss_pred cceeEEEEECCC--CCeeEEEEEE
Q 011768 202 PQGFRFAVSLPD--GPSRGYIAEI 223 (478)
Q Consensus 202 PRGi~frv~l~~--g~~rgyi~E~ 223 (478)
|-+..+++-=.+ ...+.+|+=+
T Consensus 104 Pvn~~HQv~NT~e~eDlqvlViiS 127 (167)
T PF02041_consen 104 PVNDAHQVWNTNEHEDLQVLVIIS 127 (167)
T ss_dssp -TT--EEEE---SSS-EEEEEEEE
T ss_pred CCCCcceeecCCCCcceEEEEEec
Confidence 999999986544 2556666544
No 61
>PF12219 End_tail_spike: Catalytic domain of bacteriophage endosialidase; InterPro: IPR024430 This entry represents the C-terminal domain of endosialidases which is approximately 160 amino acids in length. There are two conserved sequence motifs: VSR and YGA. The endosialidase protein forms homotrimeric molecules and this domain complexes into a tail-spike stalk. The stalk region folds in a triple beta-helix that is interrupted by a small triple beta-prism domain. The tail-spike is a multifunctional protein device used by the phage to fulfil the following functions: (i) to adsorb to the bacterial polySia capsule (ii) to de-polymerise the capsule to gain access to the outer bacterial membrane, and finally (iii) to mediate tight adhesion to the membrane, a prerequisite for the initiation of the infection cycle [].; PDB: 3JU4_A 3GW6_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=71.88 E-value=4.8 Score=37.74 Aligned_cols=45 Identities=29% Similarity=0.265 Sum_probs=33.5
Q ss_pred CCcccceeeeeecCCc-ccccccEEEEEEeCCCCCCcceecCCCCE
Q 011768 129 TDFIDGLYTICGAGSS-FLRHGYAIHMYTANKSMDNCAFCNADGDF 173 (478)
Q Consensus 129 ~Dfv~gl~tl~g~gD~-~~~~G~ai~~y~~~~sM~~~~f~NaDGD~ 173 (478)
.|=..|.|+|-.-|+- ..-+|..|-+|.+|.+|.+|+.+|+++.+
T Consensus 80 ~d~ptgQRlIvsGGegtss~~GA~itL~Gan~s~~rRavyna~ehl 125 (160)
T PF12219_consen 80 TDNPTGQRLIVSGGEGTSSSDGAQITLHGANSSTPRRAVYNANEHL 125 (160)
T ss_dssp SS-GGG-EEEEESSSSSSGGGB-EEEEEBTTSSSTTEEEEE-SEEE
T ss_pred CCCCcccEEEEeCCCCcccCCCcEEEEecCCCCCccceeeeccccc
Confidence 4666788887666654 45789999999999999999999998754
No 62
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=71.82 E-value=7.2 Score=39.95 Aligned_cols=40 Identities=18% Similarity=0.330 Sum_probs=37.2
Q ss_pred EEEEEEeCcEEEEeecee-eeecCCcEEEEcceeEEEEECC
Q 011768 173 FLVVPQKGRLWIATECGK-LEVSPGEIAVLPQGFRFAVSLP 212 (478)
Q Consensus 173 ~Li~pq~G~l~l~TEfG~-L~v~pGd~vVIPRGi~frv~l~ 212 (478)
.||.+..|.+.|.++-|. |.+.++.++++||+..+++...
T Consensus 40 ~li~v~~G~~~i~~~~g~~l~i~~p~~~~~p~~~~~~~~~~ 80 (291)
T PRK15186 40 VLIKLTTGKISITTSSGEYITASGPMLIFLAKDQTIHITME 80 (291)
T ss_pred EEEEeccceEEEEeCCCceEEeCCCeEEEEeCCcEEEEEec
Confidence 589999999999999987 9999999999999999998764
No 63
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=70.65 E-value=15 Score=37.05 Aligned_cols=77 Identities=16% Similarity=0.185 Sum_probs=58.6
Q ss_pred CCcccceeeeeecCCcccccccEEEEEEeCCCCCCcceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEE
Q 011768 129 TDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFA 208 (478)
Q Consensus 129 ~Dfv~gl~tl~g~gD~~~~~G~ai~~y~~~~sM~~~~f~NaDGD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~fr 208 (478)
..|++=+.+|.-||-. ++-+-+.-.+-.+|+.+|.+.+.-+-=.-..++|+|+.||.|..|+
T Consensus 59 ~tF~qyive~~p~GGs------------------~~~e~d~~ae~~lfVv~Ge~tv~~~G~th~l~eggyaylPpgs~~~ 120 (264)
T COG3257 59 ATFVQYIVELHPNGGS------------------QRPEGDEGAETFLFVVSGEITVKAEGKTHALREGGYAYLPPGSGWT 120 (264)
T ss_pred hhhhhheEEECCCCCC------------------CCCCCCCcceEEEEEEeeeEEEEEcCeEEEeccCCeEEeCCCCcce
Confidence 4677777777555521 2244555667789999999999988888889999999999999999
Q ss_pred EECC-CCCeeEEEEEE
Q 011768 209 VSLP-DGPSRGYIAEI 223 (478)
Q Consensus 209 v~l~-~g~~rgyi~E~ 223 (478)
+.-. ..++|...++-
T Consensus 121 ~~N~~~~~~rfhw~rk 136 (264)
T COG3257 121 LRNAQKEDSRFHWIRK 136 (264)
T ss_pred EeeccCCceEEEEEee
Confidence 9742 33788888773
No 64
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=68.71 E-value=6.9 Score=37.25 Aligned_cols=63 Identities=19% Similarity=0.234 Sum_probs=46.0
Q ss_pred CCCCCCCCCcccccceeeeccccccc--------CCcCCCeeeeecCCCCCCCChHHHHHHHhcCCCCCCceeccceeEE
Q 011768 348 FRPPYYHRNCMSEFMGLIRGGYEAKA--------DGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFM 419 (478)
Q Consensus 348 fRpPYyHrNv~sE~mg~i~G~y~ar~--------~gf~pG~~SLHp~g~pHGP~~~~~e~a~~~~~~l~P~~~~~~lAfM 419 (478)
-|.. ||.|-..|+.+-+.|+-.-+- --+.+|-+-|.|.+++|-|.+. .++...+
T Consensus 39 ~R~d-~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~flvP~gvpHsP~r~-----------------~~t~~Lv 100 (159)
T TIGR03037 39 ARTD-FHDDPGEEFFYQLKGEMYLKVTEEGKREDVPIREGDIFLLPPHVPHSPQRP-----------------AGSIGLV 100 (159)
T ss_pred CCcc-cccCCCceEEEEEcceEEEEEEcCCcEEEEEECCCCEEEeCCCCCcccccC-----------------CCcEEEE
Confidence 3555 688876688888888843311 2378999999999999988643 4677888
Q ss_pred eeeccCccc
Q 011768 420 FESCLIPRI 428 (478)
Q Consensus 420 fET~~~l~~ 428 (478)
||-.++..-
T Consensus 101 IE~~r~~~~ 109 (159)
T TIGR03037 101 IERKRPQGE 109 (159)
T ss_pred EEeCCCCCC
Confidence 888777643
No 65
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=66.91 E-value=8.2 Score=37.40 Aligned_cols=62 Identities=19% Similarity=0.238 Sum_probs=44.8
Q ss_pred CCCCCCCCcccccceeeeccccccc--------CCcCCCeeeeecCCCCCCCChHHHHHHHhcCCCCCCceeccceeEEe
Q 011768 349 RPPYYHRNCMSEFMGLIRGGYEAKA--------DGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMF 420 (478)
Q Consensus 349 RpPYyHrNv~sE~mg~i~G~y~ar~--------~gf~pG~~SLHp~g~pHGP~~~~~e~a~~~~~~l~P~~~~~~lAfMf 420 (478)
|-. ||.|-..|+.+.+.|+-.-+- --+.+|-+-|.|.+++|-|... .++..++|
T Consensus 46 r~d-~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fllP~gvpHsP~r~-----------------~~tv~Lvi 107 (177)
T PRK13264 46 RTD-FHYDPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMFLLPPHVPHSPQRE-----------------AGSIGLVI 107 (177)
T ss_pred ccc-cccCCCceEEEEECCeEEEEEEcCCceeeEEECCCCEEEeCCCCCcCCccC-----------------CCeEEEEE
Confidence 344 688776788888999842211 2388999999999999998642 36777777
Q ss_pred eeccCccc
Q 011768 421 ESCLIPRI 428 (478)
Q Consensus 421 ET~~~l~~ 428 (478)
|-.++..-
T Consensus 108 E~~r~~~~ 115 (177)
T PRK13264 108 ERKRPEGE 115 (177)
T ss_pred EeCCCCCC
Confidence 77776643
No 66
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=66.72 E-value=20 Score=34.79 Aligned_cols=45 Identities=22% Similarity=0.380 Sum_probs=29.7
Q ss_pred ecCCCCEEEEEEeCcEEE--Eeece-------eeeecCCcEEEEcceeEEEEEC
Q 011768 167 CNADGDFLVVPQKGRLWI--ATECG-------KLEVSPGEIAVLPQGFRFAVSL 211 (478)
Q Consensus 167 ~NaDGD~Li~pq~G~l~l--~TEfG-------~L~v~pGd~vVIPRGi~frv~l 211 (478)
++.+--|++.+.+|++.+ +++-| .+.+.|||+|+||.|..+|..=
T Consensus 79 ~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~yaH~tIN 132 (182)
T PF06560_consen 79 CGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPGYAHRTIN 132 (182)
T ss_dssp --TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT-EEEEEE
T ss_pred cCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCCceEEEEE
Confidence 345677999999997654 56666 5779999999999999997643
No 67
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=66.31 E-value=28 Score=29.64 Aligned_cols=47 Identities=13% Similarity=0.001 Sum_probs=32.5
Q ss_pred EEEEEeCcEEEEeece-------eeeecCCcEEEEcceeEEEEECCCCCeeEEE
Q 011768 174 LVVPQKGRLWIATECG-------KLEVSPGEIAVLPQGFRFAVSLPDGPSRGYI 220 (478)
Q Consensus 174 Li~pq~G~l~l~TEfG-------~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi 220 (478)
.|-+.+|+|++.-.-+ .+...+|+..+|+-..-|||++.+...+.+|
T Consensus 28 ~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~D~~f~l 81 (82)
T PF09313_consen 28 KLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSDDLRFQL 81 (82)
T ss_dssp EEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESSTT-EEEE
T ss_pred EEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCCCEEEEe
Confidence 4556677776665443 3568899999999999999998666677664
No 68
>PLN00212 glutelin; Provisional
Probab=66.07 E-value=17 Score=40.29 Aligned_cols=47 Identities=21% Similarity=0.445 Sum_probs=37.6
Q ss_pred ceecCCCCEEEEEEeCcEEEEeec--e--ee--eecCCcEEEEcceeEEEEEC
Q 011768 165 AFCNADGDFLVVPQKGRLWIATEC--G--KL--EVSPGEIAVLPQGFRFAVSL 211 (478)
Q Consensus 165 ~f~NaDGD~Li~pq~G~l~l~TEf--G--~L--~v~pGd~vVIPRGi~frv~l 211 (478)
=..|..+.+++++.+|+++++=.. | .+ +|++||++|||+|..+-...
T Consensus 363 PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~GdvfVVPqg~~v~~~A 415 (493)
T PLN00212 363 PFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQLLIIPQHYAVLKKA 415 (493)
T ss_pred CeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCCEEEECCCCeEEEee
Confidence 348889999999999999988432 1 22 59999999999999886544
No 69
>PRK15185 transcriptional regulator HilD; Provisional
Probab=59.84 E-value=13 Score=38.77 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=37.4
Q ss_pred EEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECC
Q 011768 173 FLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLP 212 (478)
Q Consensus 173 ~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~ 212 (478)
.|+....|.+.|+++.|.+..-++.+|+|+|++..-|.+.
T Consensus 51 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~k~~~i~~~~~ 90 (309)
T PRK15185 51 TLVCFRSGKLTISNNHDTIYCDEPGMLVLKKEQVVNVTLE 90 (309)
T ss_pred EEEEEccceEEEEcCCceEEeCCCceEEEeCCcEEEEEhh
Confidence 5889999999999999999999999999999999988764
No 70
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=54.52 E-value=34 Score=33.29 Aligned_cols=80 Identities=14% Similarity=0.076 Sum_probs=59.9
Q ss_pred cCCCCcceEEeec-CCCCCceEEEeeeeCCccccCCCCCCCCCCCCCcc-cccceeeecccc---ccc------CCcCCC
Q 011768 311 HGDPSINTVLTAP-TDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCM-SEFMGLIRGGYE---AKA------DGFLPG 379 (478)
Q Consensus 311 H~dPSi~tvlta~-s~~pG~av~dFviF~PRw~~~e~TfRpPYyHrNv~-sE~mg~i~G~y~---ar~------~gf~pG 379 (478)
|.|+.+|.|.... +...|-...+.++.+|.-...|-...++=||.+.+ .|+++.+.|.-. ... ..+.||
T Consensus 48 ~~d~~~Y~v~~~~~~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pG 127 (191)
T PRK04190 48 TEDTVVYEVYAIEPEETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPG 127 (191)
T ss_pred cCCceEEEEEEecCCCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCC
Confidence 4567788886544 34556677788888888877787788888999887 499999998821 111 247899
Q ss_pred eeeeecCCCCC
Q 011768 380 GASLHSCMTPH 390 (478)
Q Consensus 380 ~~SLHp~g~pH 390 (478)
.+-+=|.+..|
T Consensus 128 d~v~IPpg~~H 138 (191)
T PRK04190 128 TVVYVPPYWAH 138 (191)
T ss_pred CEEEECCCCcE
Confidence 99999999999
No 71
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=52.70 E-value=1.1e+02 Score=28.14 Aligned_cols=69 Identities=10% Similarity=0.143 Sum_probs=51.0
Q ss_pred EEEEeCCCCC-CcceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEEC----CCCCeeEEEEEEc
Q 011768 153 HMYTANKSMD-NCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSL----PDGPSRGYIAEIF 224 (478)
Q Consensus 153 ~~y~~~~sM~-~~~f~NaDGD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l----~~g~~rgyi~E~~ 224 (478)
++|+.+++.. ...++ -=.|.++.||+=++...--..++.+|+++|.+-.+-...+. ++.|-.++.++.-
T Consensus 7 ~i~r~~~~~~~~~~~y---~p~i~~vlQG~K~~~~g~~~~~Y~~g~~lv~~~~lPv~~~v~~AS~~~P~l~l~l~ld 80 (155)
T PF06719_consen 7 SIFRSSRPTPPMPCVY---EPSICIVLQGSKRVHLGDQVFEYDAGQYLVSSVDLPVESEVVEASPEEPYLALSLELD 80 (155)
T ss_pred EEEEECCCCCCcceec---CCeEEEEEeeeEEEEECCceEEecCCcEEEecCCCcEEEEEeeccCCCCEEEEEEEcC
Confidence 5666766652 22333 34689999999999999999999999999998887766554 3457777777753
No 72
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=52.53 E-value=14 Score=31.11 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=15.3
Q ss_pred eeeecCCcEEEEcceeEEEEE
Q 011768 190 KLEVSPGEIAVLPQGFRFAVS 210 (478)
Q Consensus 190 ~L~v~pGd~vVIPRGi~frv~ 210 (478)
++.-+|||+||||.|.-+.|.
T Consensus 82 ~~~Q~~Ge~V~i~pg~~H~v~ 102 (114)
T PF02373_consen 82 RFVQKPGEFVFIPPGAYHQVF 102 (114)
T ss_dssp EEEEETT-EEEE-TT-EEEEE
T ss_pred cceECCCCEEEECCCceEEEE
Confidence 456789999999999999884
No 73
>PLN02288 mannose-6-phosphate isomerase
Probab=51.00 E-value=34 Score=36.89 Aligned_cols=59 Identities=12% Similarity=0.245 Sum_probs=44.1
Q ss_pred cccEEEEEEeCCCCCCcceecCCCCEEEEEEeCcEEEEeecee--eeecCCcEEEEcceeEE
Q 011768 148 HGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGK--LEVSPGEIAVLPQGFRF 207 (478)
Q Consensus 148 ~G~ai~~y~~~~sM~~~~f~NaDGD~Li~pq~G~l~l~TEfG~--L~v~pGd~vVIPRGi~f 207 (478)
..+++..+....... ..+...+|=.++++.+|++.|...-+. +.+++|+.++||.+.+.
T Consensus 332 ~eF~v~~~~l~~~~~-~~~~~~~gp~Illv~~G~~~i~~~~~~~~~~l~~G~~~fv~a~~~~ 392 (394)
T PLN02288 332 DEFEVDHCDVPPGAS-VVFPAVPGPSVFLVIEGEGVLSTGSSEDGTAAKRGDVFFVPAGTEI 392 (394)
T ss_pred cceEEEEEEeCCCCe-EeecCCCCCEEEEEEcCEEEEecCCccceEEEeceeEEEEeCCCcc
Confidence 446666666554421 134457898999999999999887777 77999999999987654
No 74
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=49.60 E-value=48 Score=35.54 Aligned_cols=58 Identities=14% Similarity=0.178 Sum_probs=44.3
Q ss_pred ccEEEEEEeCCCCCCcceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeE-EEE
Q 011768 149 GYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFR-FAV 209 (478)
Q Consensus 149 G~ai~~y~~~~sM~~~~f~NaDGD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~-frv 209 (478)
-+++..+..... ....+.+|=.++++.+|++.|.+.-+.+.+++|+.++||.+.. +.+
T Consensus 320 ~F~~~~~~l~~~---~~~~~~~~~~Illv~~G~~~i~~~~~~~~l~~G~~~fipa~~~~~~~ 378 (389)
T PRK15131 320 DFAFSLHDLSDQ---PTTLSQQSAAILFCVEGEAVLWKGEQQLTLKPGESAFIAANESPVTV 378 (389)
T ss_pred CcEEEEEEECCc---eEEecCCCcEEEEEEcceEEEEeCCeEEEECCCCEEEEeCCCccEEE
Confidence 366666665432 2344557778999999999999887889999999999998764 444
No 75
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=47.84 E-value=50 Score=28.41 Aligned_cols=54 Identities=13% Similarity=0.155 Sum_probs=42.1
Q ss_pred cCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEE
Q 011768 168 NADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEI 223 (478)
Q Consensus 168 NaDGD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~ 223 (478)
..+-.-++++.+|++.|..+- ..+.+|+.+++-.|...++...+..+|.+++--
T Consensus 17 ~~~~~~~iyv~~G~~~v~~~~--~~~~~~~~~~l~~g~~i~~~a~~~~a~~lll~G 70 (104)
T PF05726_consen 17 PPGHNAFIYVLEGSVEVGGEE--DPLEAGQLVVLEDGDEIELTAGEEGARFLLLGG 70 (104)
T ss_dssp ETT-EEEEEEEESEEEETTTT--EEEETTEEEEE-SECEEEEEESSSSEEEEEEEE
T ss_pred CCCCEEEEEEEECcEEECCCc--ceECCCcEEEECCCceEEEEECCCCcEEEEEEc
Confidence 345567899999998775544 679999999999999999988657889988863
No 76
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=47.56 E-value=25 Score=36.27 Aligned_cols=24 Identities=25% Similarity=0.623 Sum_probs=17.1
Q ss_pred eeeecCCcEEEEcceeEEEEECCC
Q 011768 190 KLEVSPGEIAVLPQGFRFAVSLPD 213 (478)
Q Consensus 190 ~L~v~pGd~vVIPRGi~frv~l~~ 213 (478)
...++|||+++||||+.+.....+
T Consensus 177 ~~~L~pGD~LYlPrG~~H~~~~~~ 200 (319)
T PF08007_consen 177 EVVLEPGDVLYLPRGWWHQAVTTD 200 (319)
T ss_dssp EEEE-TT-EEEE-TT-EEEEEESS
T ss_pred EEEECCCCEEEECCCccCCCCCCC
Confidence 467999999999999999998744
No 77
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=37.49 E-value=30 Score=36.28 Aligned_cols=35 Identities=26% Similarity=0.479 Sum_probs=29.3
Q ss_pred eeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEEcCC
Q 011768 186 TECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGT 226 (478)
Q Consensus 186 TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~~~ 226 (478)
.-+=++.++|||.++||.|+.+-+ .+|.++|+-..
T Consensus 155 ~lLn~v~lkpGe~~fl~Agt~HA~------~~G~~lEvmqn 189 (312)
T COG1482 155 LLLNRVKLKPGEAFFLPAGTPHAY------LKGLVLEVMQN 189 (312)
T ss_pred hhhcEEecCCCCEEEecCCCceee------ccceEEEEEec
Confidence 456678899999999999998887 45799998754
No 78
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=35.94 E-value=1.4e+02 Score=31.61 Aligned_cols=60 Identities=12% Similarity=0.226 Sum_probs=48.5
Q ss_pred cccEEEEEEeCCCCCCcceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcce-eEEEEE
Q 011768 148 HGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQG-FRFAVS 210 (478)
Q Consensus 148 ~G~ai~~y~~~~sM~~~~f~NaDGD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRG-i~frv~ 210 (478)
+-+++..+..+. ...+.+.++=.|+.+.+|.+.|.-....+.+++|+-++||.. -.|.++
T Consensus 240 ~~F~l~~~~i~~---~~~~~~~~~~~il~v~eG~~~l~~~~~~~~l~~G~s~~ipa~~~~~~i~ 300 (312)
T COG1482 240 EDFALYKWDISG---TAEFIKQESFSILLVLEGEGTLIGGGQTLKLKKGESFFIPANDGPYTIE 300 (312)
T ss_pred cceEEEEEeccC---hhhhccCCCcEEEEEEcCeEEEecCCEEEEEcCCcEEEEEcCCCcEEEE
Confidence 345566666664 225677889999999999999999999999999999999988 566664
No 79
>PF04773 FecR: FecR protein; InterPro: IPR006860 FecR is involved in regulation of iron dicitrate transport. In the absence of citrate FecR inactivates FecI. FecR is probably a sensor that recognises iron dicitrate in the periplasm.
Probab=35.28 E-value=2.1e+02 Score=23.23 Aligned_cols=49 Identities=27% Similarity=0.379 Sum_probs=32.3
Q ss_pred EEEEEeCcEEEEeecee---eeecCCcEEEEcceeEEEEEC--CCCCeeEEEEE
Q 011768 174 LVVPQKGRLWIATECGK---LEVSPGEIAVLPQGFRFAVSL--PDGPSRGYIAE 222 (478)
Q Consensus 174 Li~pq~G~l~l~TEfG~---L~v~pGd~vVIPRGi~frv~l--~~g~~rgyi~E 222 (478)
-+...+|.+.+.+.-+. +.|+-+...+..||+.|++.+ .++..+.-++|
T Consensus 41 ~~~L~~G~~~~~~~~~~~~~~~V~T~~~~i~v~GT~f~v~v~~~~~~~~v~v~~ 94 (98)
T PF04773_consen 41 RLRLLSGEILFDVSPGKKRPFEVRTPTATIGVRGTRFSVRVDAEDGSTRVAVLE 94 (98)
T ss_pred EEEEcCCCEEEEEcccCCCCEEEEeCCEEEEEecCEEEEEEECCCCcEEEEEEe
Confidence 45556777777655443 778888888899999996654 34444444444
No 80
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=35.06 E-value=2e+02 Score=29.11 Aligned_cols=68 Identities=25% Similarity=0.341 Sum_probs=40.6
Q ss_pred cEEEEEEeCCCCCCcceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEEc
Q 011768 150 YAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIF 224 (478)
Q Consensus 150 ~ai~~y~~~~sM~~~~f~NaDGD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~ 224 (478)
+.|.+|.++..=. ..++. -+-|+-.|.-+-.+-.+.|.+.|||-|.|+.|+-+++-...|. .+|=|+-
T Consensus 120 L~i~l~~s~~~~~----~~~~~-~v~V~~DG~~~t~~aG~~l~L~PGESiTL~Pg~yH~Fw~e~g~--vLigEVS 187 (225)
T PF07385_consen 120 LVIELYNSDPDGE----LDADT-DVTVPVDGIRRTVPAGTQLRLNPGESITLPPGIYHWFWGEGGD--VLIGEVS 187 (225)
T ss_dssp EEEEEEEB--TTS----SB-SS--EEEEETTEEEEE-TT-EEEE-TT-EEEE-TTEEEEEEE-TTS--EEEEEEE
T ss_pred EEEEEEeccCCCc----cccCC-CeEEecCCcEEEecCCceEEeCCCCeEeeCCCCeeeEEecCCC--EEEEeee
Confidence 3457777764210 11122 3556677888888889999999999999999999999764444 6677763
No 81
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=32.64 E-value=78 Score=30.35 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=37.6
Q ss_pred ceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEE
Q 011768 165 AFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEI 223 (478)
Q Consensus 165 ~f~NaDGD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~ 223 (478)
....++.-.|+|..+|+..|...-+...+.+||-++|-......+ ++..+.+++|+
T Consensus 129 ~~~~~~~~~l~~~~~G~~~i~~~~~~~~L~~~d~l~~~~~~~~~l---~~~g~ll~v~i 184 (184)
T PF05962_consen 129 LKLPAASTVLVYVLEGAWSITEGGNCISLSAGDLLLIDDEEDLPL---TGDGQLLWVSI 184 (184)
T ss_dssp E-EE--SEEEEEESSS-EEECCCEEEEEE-TT-EEEEESEECEEE---EEECCEEEEE-
T ss_pred EeeCCCCEEEEEEeeCcEEEecCCCceEcCCCCEEEEeCCCceEe---cCCeeEEEEeC
Confidence 445677888899999998887777899999999999877544433 44667777764
No 82
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=31.75 E-value=44 Score=31.53 Aligned_cols=22 Identities=23% Similarity=0.570 Sum_probs=16.6
Q ss_pred eeecCCcEEEEcceeEEEEECC
Q 011768 191 LEVSPGEIAVLPQGFRFAVSLP 212 (478)
Q Consensus 191 L~v~pGd~vVIPRGi~frv~l~ 212 (478)
..++|||++.||+|--++|+-.
T Consensus 211 ~~l~pGD~LfiP~gWwH~V~~~ 232 (251)
T PF13621_consen 211 VVLEPGDVLFIPPGWWHQVENL 232 (251)
T ss_dssp EEEETT-EEEE-TT-EEEEEES
T ss_pred EEECCCeEEEECCCCeEEEEEc
Confidence 4689999999999999999864
No 83
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=30.23 E-value=2e+02 Score=29.63 Aligned_cols=56 Identities=20% Similarity=0.328 Sum_probs=42.8
Q ss_pred CCCCEEEEEEeCcEEEEe---ece----eeee---cCCcEEEEcceeEEEEECCCCCeeEEEEEEcC
Q 011768 169 ADGDFLVVPQKGRLWIAT---ECG----KLEV---SPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG 225 (478)
Q Consensus 169 aDGD~Li~pq~G~l~l~T---EfG----~L~v---~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~~ 225 (478)
.|=+.+||+.+|..+|.. .|| ++.| .|=|-|.||.|.+|++.. ...++.-+|++.+
T Consensus 47 ~~~E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYvp~g~~~~vtA-~t~~~vAvC~AP~ 112 (270)
T COG3718 47 GDRERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYVPAGSAFSVTA-TTDLEVAVCSAPG 112 (270)
T ss_pred CCceEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEecCCceEEEEe-ecceEEEEEeCCC
Confidence 444667888999999873 333 3333 355999999999999987 4577999999985
No 84
>PF09092 Lyase_N: Lyase, N terminal; InterPro: IPR015176 This entry represents a domain predominantly found in chondroitin ABC lyase I, adopting a jelly-roll fold topology consisting of a two-layered bent beta-sheet sandwich with one short alpha-helix. The convex beta sheet is composed of five antiparallel strands, whilst the concave beta-sheet contains five antiparallel beta-strands with a loop between two consecutive strands folding back onto the concave surface. This domain is required for binding of the protein to long glycosaminoglycan chains []. ; PDB: 2Q1F_A 1HN0_A.
Probab=29.95 E-value=20 Score=34.71 Aligned_cols=53 Identities=26% Similarity=0.518 Sum_probs=32.0
Q ss_pred CeEeeecCCccceeeccCCcccccccccccCCCCcceEEeec-CCCCCceEEEeeeeCCc
Q 011768 282 FNVVAWHGNYVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAP-TDKPGVALLDFVIFPPR 340 (478)
Q Consensus 282 fDVVaWhGn~~Pykydl~~F~pi~svs~dH~dPSi~tvlta~-s~~pG~av~dFviF~PR 340 (478)
+|--||.|.++.|++|+.- .+..+ ..+=.--++++| +...|....|.++|...
T Consensus 111 LNFtGWR~~WV~y~~Dm~g-~~~~g-----~~~md~l~i~AP~~~~~G~lf~D~l~~~~~ 164 (178)
T PF09092_consen 111 LNFTGWRAAWVSYERDMQG-RPEEG-----SKDMDSLRITAPANDPSGTLFFDRLIFSVK 164 (178)
T ss_dssp ---SEEEEEEEETTTTSEE----TT----------EEEEE--TTSSEEEEEEEEEEEEEE
T ss_pred eecccceeeeeeehhhccC-CcccC-----cceeeEEEEEccccCCCccEEEEEEeeccc
Confidence 4667999999999999764 22221 011223577887 45689999999998754
No 85
>cd00214 Calpain_III Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are separated by C2-like domain III. Domain III plays an important role in calcium-induced activation of calpain involving electrostatic interactions with subdomain II. Proposed to mediate calpain's interaction with phospholipids and translocation to cytoplasmic/nuclear membranes. CD includes subdomain III of typical and atypical calpains.
Probab=29.77 E-value=74 Score=29.07 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=15.3
Q ss_pred EEEeeceeeeecCCcEEEEc
Q 011768 183 WIATECGKLEVSPGEIAVLP 202 (478)
Q Consensus 183 ~l~TEfG~L~v~pGd~vVIP 202 (478)
.-....-.+.+.||+|+|||
T Consensus 105 ~~rev~~~~~L~pG~YvIIP 124 (150)
T cd00214 105 NTREVSLRFRLPPGEYVIVP 124 (150)
T ss_pred cccEEEEEEEcCCCCEEEEe
Confidence 33445556789999999999
No 86
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=29.17 E-value=1e+02 Score=31.29 Aligned_cols=74 Identities=22% Similarity=0.359 Sum_probs=48.2
Q ss_pred eeeeecCCcccccccEEEEEEeCCCCCCcceecCCCCEEE-EEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCC
Q 011768 136 YTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLV-VPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDG 214 (478)
Q Consensus 136 ~tl~g~gD~~~~~G~ai~~y~~~~sM~~~~f~NaDGD~Li-~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g 214 (478)
-++.--|-|..|.|.-| +.- .++|+---||||+ |+.+|..+ .|-+++||+-.+|.-+-++-.- -.
T Consensus 34 lkVm~VGGPN~RkdyHi-----eeg--eE~FyQ~KGdMvLKVie~g~~r------DivI~qGe~flLParVpHSPqR-Fa 99 (279)
T KOG3995|consen 34 LKVMFVGGPNTRKDYHI-----EEG--EEVFYQLKGDMVLKVLEQGKHR------DVVIRQGEIFLLPARVPHSPQR-FA 99 (279)
T ss_pred eEEEEecCCCccccccc-----CCc--chhheeecCceEEeeeccCcce------eeEEecCcEEEeccCCCCChhh-hc
Confidence 34444566777777544 222 4588999999876 55666666 8889999999999766543210 01
Q ss_pred CeeEEEEEE
Q 011768 215 PSRGYIAEI 223 (478)
Q Consensus 215 ~~rgyi~E~ 223 (478)
.+-|+|+|-
T Consensus 100 ntvGlVVEr 108 (279)
T KOG3995|consen 100 NTVGLVVER 108 (279)
T ss_pred cceeEEEEe
Confidence 245777774
No 87
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=28.94 E-value=2.2e+02 Score=25.10 Aligned_cols=56 Identities=18% Similarity=0.165 Sum_probs=42.7
Q ss_pred ceecCCCCEEEEEEeCcEEEEe--eceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEE
Q 011768 165 AFCNADGDFLVVPQKGRLWIAT--ECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAE 222 (478)
Q Consensus 165 ~f~NaDGD~Li~pq~G~l~l~T--EfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E 222 (478)
+-.|...-|+.-+..|.+.++= +-....++.||--.||....|++...+ .--|+|+
T Consensus 35 Y~F~T~~~E~M~vvsG~l~V~lpg~~ew~~~~aGesF~VpanssF~v~v~~--~~~Y~C~ 92 (94)
T PF06865_consen 35 YTFGTSAPERMEVVSGELEVKLPGEDEWQTYSAGESFEVPANSSFDVKVKE--PTAYLCS 92 (94)
T ss_dssp EEEEESS-EEEEEEESEEEEEETT-SS-EEEETT-EEEE-TTEEEEEEESS---EEEEEE
T ss_pred EEEcCCCCEEEEEEEeEEEEEcCCCcccEEeCCCCeEEECCCCeEEEEECc--ceeeEEE
Confidence 6678888899999999998874 345778999999999999999998754 5688886
No 88
>KOG4600 consensus Mitochondrial ribosomal protein MRP7 (L2) [Translation, ribosomal structure and biogenesis]
Probab=26.50 E-value=37 Score=31.88 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=17.2
Q ss_pred ceeeeecCCcEEEEcceeEEE
Q 011768 188 CGKLEVSPGEIAVLPQGFRFA 208 (478)
Q Consensus 188 fG~L~v~pGd~vVIPRGi~fr 208 (478)
+|--.|.||+|+|=+||++|-
T Consensus 53 ~egq~V~~G~IIvrQRgtkfH 73 (144)
T KOG4600|consen 53 YEGQSVIPGNIIVRQRGTKFH 73 (144)
T ss_pred cCCeeeecccEEEEecccccC
Confidence 444568999999999999884
No 89
>KOG4046 consensus RNase MRP and P, subunit POP4/p29 [RNA processing and modification]
Probab=26.10 E-value=68 Score=32.28 Aligned_cols=50 Identities=30% Similarity=0.430 Sum_probs=36.0
Q ss_pred EeCcEEEEe-eceeeeecCCcEEEEcc-eeEEEEECCCCCeeEEEEEEcCCeeee
Q 011768 178 QKGRLWIAT-ECGKLEVSPGEIAVLPQ-GFRFAVSLPDGPSRGYIAEIFGTHFQL 230 (478)
Q Consensus 178 q~G~l~l~T-EfG~L~v~pGd~vVIPR-Gi~frv~l~~g~~rgyi~E~~~~~~~L 230 (478)
.+|-..++| -|=.|-+....++|||. |..|++.+ +++ +++.+.||.||.+
T Consensus 153 l~GI~l~etkh~fklitke~ri~~IPK~~cVf~~~~-g~~--~~~f~i~g~~f~~ 204 (224)
T KOG4046|consen 153 LLGIVLLETKHFFKLITKENRIVVIPKKECVFAFIT-GVQ--GLMFSIFGDHFGI 204 (224)
T ss_pred eeeEEeeecchhhhhhccCCeEEEEeccCcEEEEEe-CCc--cEEEEEecccccc
Confidence 344444444 34456677779999995 89999987 323 5999999999866
No 90
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=25.87 E-value=1.7e+02 Score=29.26 Aligned_cols=50 Identities=28% Similarity=0.391 Sum_probs=40.9
Q ss_pred EEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEEc
Q 011768 173 FLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIF 224 (478)
Q Consensus 173 ~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~ 224 (478)
.+-||-+|...=.|--|.|++.||+-+.||.|+.+++-.-+|. -+|-|+-
T Consensus 137 ~vtv~~dg~r~~~~ag~~lkL~PGesitL~Pg~~HsFwae~g~--vlvgEvS 186 (225)
T COG3822 137 DVTVPVDGCRQTHTAGSQLKLSPGESITLPPGLYHSFWAEEGG--VLVGEVS 186 (225)
T ss_pred CeEecCCCcEEEeccceeEEECCCCcEecCCCceeeeeecCCc--EEEEEEe
Confidence 3678888999999999999999999999999999998654433 5566653
No 91
>PRK13855 type IV secretion system protein VirB10; Provisional
Probab=24.14 E-value=1e+02 Score=33.31 Aligned_cols=49 Identities=22% Similarity=0.403 Sum_probs=26.8
Q ss_pred CCcEEEEcceeEE----EEECCCCCeeEEEEEEcCCeeeeCC----------CCCCCCCCCCCCCC
Q 011768 195 PGEIAVLPQGFRF----AVSLPDGPSRGYIAEIFGTHFQLPD----------LGPIGANGLAAPRD 246 (478)
Q Consensus 195 pGd~vVIPRGi~f----rv~l~~g~~rgyi~E~~~~~~~LPe----------lGpiG~nglan~RD 246 (478)
-|..++||||.+. +-.+..|..|.+|+-+ .+.+|+ -+++|..|+-..-|
T Consensus 216 ~G~~lLIPkGS~liG~Y~s~v~~GQ~Rv~V~W~---Ri~~P~G~~I~L~spgaD~lG~aG~~G~Vd 278 (376)
T PRK13855 216 TNNVVLLDRGTTVVGEIQRGLQQGDARVFVLWD---RAETPDHAMISLSSPGADELGRSGLPGTVD 278 (376)
T ss_pred CCCEEEecccCEEEEEeCCCCccccceeeeeee---eEeCCCCcEEeCCCCCcccccCCCCCcccc
Confidence 3456666666653 3333445666666643 244443 45677777765443
No 92
>TIGR00062 L27 ribosomal protein L27. Eubacterial, chloroplast, and mitochondrial. Mitochondrial members have an additional C-terminal domain.
Probab=23.98 E-value=60 Score=28.10 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=17.8
Q ss_pred ceeeeecCCcEEEEcceeEEE
Q 011768 188 CGKLEVSPGEIAVLPQGFRFA 208 (478)
Q Consensus 188 fG~L~v~pGd~vVIPRGi~fr 208 (478)
+|--.|.||.|+|=+||++|-
T Consensus 26 ~~gq~V~~G~IivRQRGtk~h 46 (83)
T TIGR00062 26 AGGQFVRAGSIIVRQRGTKFH 46 (83)
T ss_pred cCCEEEcCCcEEEEcCCceEC
Confidence 455579999999999999984
No 93
>PF02237 BPL_C: Biotin protein ligase C terminal domain; InterPro: IPR003142 This C-terminal domain has an SH3-like barrel fold, the function of which is unknown. It is found associated with prokaryotic bifunctional transcriptional repressors [] and eukaryotic enzymes involved in biotin utilization [, ]. In Escherichia coli the biotin operon repressor (BirA) is a bifunctional protein. BirA acts both as the acetyl-coA carboxylase biotin holoenzyme synthetase (6.3.4.15 from EC) and as the biotin operon repressor. DNA sequence analysis of mutations indicates that the helix-turn-helix DNA binding region is located at the N terminus while mutations affecting enzyme function, although mapping over a large region, are found mainly in the central part of the protein's primary sequence [].; GO: 0006464 protein modification process; PDB: 3RUX_A 2CGH_A 3L1A_B 3L2Z_A 1HXD_A 1BIB_A 2EWN_B 1BIA_A 2EJ9_A 3FJP_A ....
Probab=23.42 E-value=82 Score=23.68 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=19.9
Q ss_pred EEEeCcEEEEeece-eeeecCCcEEE
Q 011768 176 VPQKGRLWIATECG-KLEVSPGEIAV 200 (478)
Q Consensus 176 ~pq~G~l~l~TEfG-~L~v~pGd~vV 200 (478)
+=.+|.|.|+|+-| ...+..||+.+
T Consensus 22 Id~~G~L~v~~~~g~~~~i~sGdv~~ 47 (48)
T PF02237_consen 22 IDDDGALLVRTEDGSIRTISSGDVSL 47 (48)
T ss_dssp EETTSEEEEEETTEEEEEESSSEEEE
T ss_pred ECCCCEEEEEECCCCEEEEEEEEEEe
Confidence 34568999999999 77799999753
No 94
>smart00538 POP4 A domain found in a protein subunit of human RNase MRP and RNase P ribonucleoprotein complexes and archaeal proteins.
Probab=23.04 E-value=2.9e+02 Score=23.89 Aligned_cols=30 Identities=30% Similarity=0.511 Sum_probs=21.6
Q ss_pred cEEEEc-ceeEEEEECCCCCeeEEEEEEcCCeeee
Q 011768 197 EIAVLP-QGFRFAVSLPDGPSRGYIAEIFGTHFQL 230 (478)
Q Consensus 197 d~vVIP-RGi~frv~l~~g~~rgyi~E~~~~~~~L 230 (478)
...+|| .+..|++.+++| ..++++|.++..
T Consensus 49 ~~~~IpK~~~vF~f~l~~~----~~~~i~G~~l~~ 79 (92)
T smart00538 49 RVKTVPKDGAVFEFELPGG----EIVRIDGDRLVG 79 (92)
T ss_pred cEEEEECCCeEEEEEECCC----eEEEEECceeee
Confidence 345565 578899999764 778888887653
No 95
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=23.03 E-value=55 Score=33.40 Aligned_cols=34 Identities=21% Similarity=0.463 Sum_probs=27.5
Q ss_pred eeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEEcC
Q 011768 186 TECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG 225 (478)
Q Consensus 186 TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~~ 225 (478)
.-+=.+.|+|||.+.||.|+.+.. ..+.++|+-.
T Consensus 148 ~~ln~v~v~~Gd~i~ipaGt~HA~------~g~~~~Eiq~ 181 (302)
T TIGR00218 148 LLLNRIKLKPGDFFYVPSGTPHAY------KGGLVLEVMQ 181 (302)
T ss_pred HHhcccccCCCCEEEeCCCCcccc------cCceEEEEEc
Confidence 556678899999999999998863 4588888864
No 96
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=21.85 E-value=19 Score=32.37 Aligned_cols=68 Identities=18% Similarity=0.249 Sum_probs=44.6
Q ss_pred cCCCCCCCCCCCCCcccccceeeeccccc---ccC-----------C--cCCCeeeeecCCCCCCCChHHHHHHHhcCCC
Q 011768 343 VAEHTFRPPYYHRNCMSEFMGLIRGGYEA---KAD-----------G--FLPGGASLHSCMTPHGPDTKTYEATIARGSE 406 (478)
Q Consensus 343 ~~e~TfRpPYyHrNv~sE~mg~i~G~y~a---r~~-----------g--f~pG~~SLHp~g~pHGP~~~~~e~a~~~~~~ 406 (478)
..++++++|.|| -..|+++.+.|.-.. ..+ . +++|.+..-|.|.+|=-. +.+. +
T Consensus 41 i~pg~~~~Ph~h--~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~vP~G~~h~~~------n~~~--~ 110 (144)
T PF00190_consen 41 IEPGGLRAPHYH--NADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVVPAGHPHWII------NDGD--D 110 (144)
T ss_dssp EETTEEEEEEEE--SSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEEE-TT-EEEEE------ECSS--S
T ss_pred hhcCCccceeEe--eeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccceeeccceeEEEE------cCCC--C
Confidence 368999999888 346999999887431 001 2 889999999999999211 1110 0
Q ss_pred CCCceeccceeEEeeeccCc
Q 011768 407 AGPYKITDTMAFMFESCLIP 426 (478)
Q Consensus 407 l~P~~~~~~lAfMfET~~~l 426 (478)
+....++|+|..+-
T Consensus 111 ------~~~~~~~f~~~~~~ 124 (144)
T PF00190_consen 111 ------EALVLIIFDTNNPP 124 (144)
T ss_dssp ------SEEEEEEEEESSTT
T ss_pred ------CCEEEEEEECCCCc
Confidence 35567788888873
No 97
>PRK05435 rpmA 50S ribosomal protein L27; Validated
Probab=21.75 E-value=69 Score=27.68 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=17.4
Q ss_pred ceeeeecCCcEEEEcceeEEE
Q 011768 188 CGKLEVSPGEIAVLPQGFRFA 208 (478)
Q Consensus 188 fG~L~v~pGd~vVIPRGi~fr 208 (478)
+|--.|.||.|+|=+||++|-
T Consensus 26 ~~g~~V~~G~IivRQRGtk~~ 46 (82)
T PRK05435 26 FGGQFVKAGNIIVRQRGTKFH 46 (82)
T ss_pred cCCEEEcCCcEEEEeCCCeEC
Confidence 445568999999999999884
No 98
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=21.65 E-value=1.7e+02 Score=27.94 Aligned_cols=66 Identities=20% Similarity=0.241 Sum_probs=47.5
Q ss_pred CCcccceeeeeecCCcccccccEEEEEEeCCCC--CCcceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEccee
Q 011768 129 TDFIDGLYTICGAGSSFLRHGYAIHMYTANKSM--DNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGF 205 (478)
Q Consensus 129 ~Dfv~gl~tl~g~gD~~~~~G~ai~~y~~~~sM--~~~~f~NaDGD~Li~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi 205 (478)
.--++|++.+.-.| |.|-.+.+. ....-+..++|.|+|=|.=.-.+++.-|.+-|.||+ +-.||+-
T Consensus 76 ~~~~~g~ki~l~HG----------h~~~~~~~~~~l~~la~~~~~Dvli~GHTH~p~~~~~~~i~~vNPGS-~s~pr~~ 143 (172)
T COG0622 76 VLEVGGVKIFLTHG----------HLYFVKTDLSLLEYLAKELGADVLIFGHTHKPVAEKVGGILLVNPGS-VSGPRGG 143 (172)
T ss_pred eEEECCEEEEEECC----------CccccccCHHHHHHHHHhcCCCEEEECCCCcccEEEECCEEEEcCCC-cCCCCCC
Confidence 34455666666666 333222232 222557889999999999999999999999999999 4578887
No 99
>CHL00121 rpl27 ribosomal protein L27; Reviewed
Probab=21.08 E-value=74 Score=27.71 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=17.4
Q ss_pred ceeeeecCCcEEEEcceeEEE
Q 011768 188 CGKLEVSPGEIAVLPQGFRFA 208 (478)
Q Consensus 188 fG~L~v~pGd~vVIPRGi~fr 208 (478)
+|--.|.||.|+|=+||++|-
T Consensus 26 ~~gq~V~~G~IivRQRGtk~h 46 (86)
T CHL00121 26 FGGEKVSAGNILIRQRGTKFK 46 (86)
T ss_pred cCCEEEcCCcEEEEcCCCeEC
Confidence 344568999999999999884
No 100
>PRK13017 dihydroxy-acid dehydratase; Provisional
Probab=20.77 E-value=1.7e+02 Score=33.45 Aligned_cols=75 Identities=15% Similarity=0.190 Sum_probs=52.4
Q ss_pred CccccCCCCCCCCCCCcccceeeeeecCCcccccccEEEEEEeCCCCCCcceecCCCCEEEEEEeCcEEEEee-------
Q 011768 115 TQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATE------- 187 (478)
Q Consensus 115 ~~lrW~p~~~p~~~~Dfv~gl~tl~g~gD~~~~~G~ai~~y~~~~sM~~~~f~NaDGD~Li~pq~G~l~l~TE------- 187 (478)
.-+| |++-|-.+. .|+..|-||=- +|.-|-+..+..++..+++.|+|++-- ++|..++.-.
T Consensus 370 ~VI~--p~~~P~~~~---ggl~vL~GNLA----~GAViK~sav~~~~~~~~~~~~~~~~~---~~GpA~VF~see~a~~a 437 (596)
T PRK13017 370 DVIR--PYDAPLKER---AGFLVLRGNLF----DSAIMKTSVISEEFRERYLSEPGDENA---FEGRAVVFDGPEDYHAR 437 (596)
T ss_pred CccC--CccccCCCC---CCEEEEEecCc----CCceeEccccCHHHhhhhccccCcCCe---EEEeEEEECCHHHHHHH
Confidence 3455 666662111 48999988862 566666666665554568888888743 8998887743
Q ss_pred --ceeeeecCCcEEEE
Q 011768 188 --CGKLEVSPGEIAVL 201 (478)
Q Consensus 188 --fG~L~v~pGd~vVI 201 (478)
-|.|.+.+||+|||
T Consensus 438 i~~g~i~~~~gdVvVI 453 (596)
T PRK13017 438 IDDPALDIDEHCILVI 453 (596)
T ss_pred HhCCCCCCCCCeEEEE
Confidence 58899999999998
Done!