Query 011769
Match_columns 478
No_of_seqs 266 out of 2272
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 05:01:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011769.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011769hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 5.7E-46 1.2E-50 383.9 45.0 353 97-474 12-372 (455)
2 PRK10367 DNA-damage-inducible 100.0 4E-43 8.7E-48 362.3 44.8 348 99-471 6-360 (441)
3 PRK10189 MATE family multidrug 100.0 2.4E-41 5.2E-46 352.4 45.2 352 98-474 25-390 (478)
4 PRK00187 multidrug efflux prot 100.0 1.6E-40 3.5E-45 345.7 44.7 352 97-474 5-372 (464)
5 PRK09575 vmrA multidrug efflux 100.0 3.2E-40 6.9E-45 342.7 44.8 353 97-474 7-367 (453)
6 PRK01766 multidrug efflux prot 100.0 3.9E-39 8.4E-44 335.4 45.0 353 97-474 7-370 (456)
7 TIGR00797 matE putative efflux 100.0 1.3E-34 2.8E-39 289.9 42.2 334 110-468 1-341 (342)
8 KOG1347 Uncharacterized membra 100.0 1.1E-31 2.5E-36 275.8 36.2 352 98-474 24-380 (473)
9 TIGR01695 mviN integral membra 100.0 7.1E-27 1.5E-31 246.2 44.3 340 104-471 2-356 (502)
10 TIGR02900 spore_V_B stage V sp 100.0 1.1E-25 2.4E-30 236.3 40.5 327 105-459 2-352 (488)
11 PRK15099 O-antigen translocase 100.0 2.1E-25 4.5E-30 229.6 38.4 324 104-462 3-335 (416)
12 COG0534 NorM Na+-driven multid 99.9 1.5E-25 3.3E-30 231.9 21.4 258 6-332 186-446 (455)
13 PRK00187 multidrug efflux prot 99.9 8.7E-25 1.9E-29 227.7 22.4 209 98-329 232-444 (464)
14 PRK10189 MATE family multidrug 99.9 1.4E-23 2.9E-28 219.1 23.9 257 10-332 208-465 (478)
15 PRK01766 multidrug efflux prot 99.9 4.6E-23 1E-27 214.7 21.2 254 10-330 189-443 (456)
16 PRK09575 vmrA multidrug efflux 99.9 7E-23 1.5E-27 212.9 21.4 254 6-330 182-437 (453)
17 PF03023 MVIN: MviN-like prote 99.9 3.4E-20 7.3E-25 192.1 40.6 318 132-474 5-334 (451)
18 COG0728 MviN Uncharacterized m 99.9 2.5E-19 5.5E-24 183.6 43.6 329 101-451 6-341 (518)
19 PRK10367 DNA-damage-inducible 99.9 9.1E-21 2E-25 196.0 18.4 250 6-329 179-431 (441)
20 PRK10459 colanic acid exporter 99.9 8.3E-18 1.8E-22 176.9 39.1 313 101-455 4-319 (492)
21 TIGR01695 mviN integral membra 99.8 1.6E-18 3.6E-23 182.6 29.4 232 99-357 220-453 (502)
22 COG2244 RfbX Membrane protein 99.8 3E-16 6.4E-21 164.6 36.6 317 101-456 5-327 (480)
23 TIGR02900 spore_V_B stage V sp 99.8 1.3E-16 2.8E-21 167.5 24.5 204 98-330 221-435 (488)
24 PF01554 MatE: MatE; InterPro 99.8 4.2E-18 9.2E-23 151.5 10.2 161 110-295 1-162 (162)
25 PF01943 Polysacc_synt: Polysa 99.7 1.4E-14 3E-19 139.5 31.4 269 105-409 2-272 (273)
26 PF03023 MVIN: MviN-like prote 99.7 6E-15 1.3E-19 152.9 30.0 210 98-331 194-405 (451)
27 PRK15099 O-antigen translocase 99.7 1.1E-15 2.3E-20 157.4 19.7 241 13-329 171-412 (416)
28 COG0728 MviN Uncharacterized m 99.7 1.4E-13 3.1E-18 141.5 33.9 237 98-360 228-466 (518)
29 PRK10459 colanic acid exporter 99.6 1.6E-12 3.5E-17 136.8 34.4 201 99-329 204-405 (492)
30 PF13440 Polysacc_synt_3: Poly 99.5 1.8E-11 3.8E-16 116.6 30.4 246 120-408 2-250 (251)
31 COG2244 RfbX Membrane protein 99.5 1.1E-11 2.5E-16 129.9 26.5 187 98-314 209-396 (480)
32 TIGR00797 matE putative efflux 99.3 1.7E-11 3.6E-16 122.7 12.2 130 98-252 212-341 (342)
33 PF01554 MatE: MatE; InterPro 99.3 2.8E-12 6E-17 114.0 4.4 125 351-475 1-125 (162)
34 KOG1347 Uncharacterized membra 99.2 2E-11 4.2E-16 126.3 4.1 205 99-328 244-451 (473)
35 PF07260 ANKH: Progressive ank 98.7 2.8E-05 6E-10 74.3 27.5 258 99-391 8-289 (345)
36 PF14667 Polysacc_synt_C: Poly 98.5 8.5E-06 1.8E-10 70.8 17.4 81 249-331 2-82 (146)
37 PF04506 Rft-1: Rft protein; 98.4 4E-05 8.7E-10 80.9 21.9 215 101-331 252-472 (549)
38 KOG2864 Nuclear division RFT1 98.0 0.0014 3E-08 65.7 22.1 213 101-336 238-456 (530)
39 PF04506 Rft-1: Rft protein; 97.1 0.42 9.1E-06 50.9 26.3 192 261-452 151-375 (549)
40 KOG2864 Nuclear division RFT1 96.7 0.92 2E-05 46.1 27.1 322 100-451 6-354 (530)
41 PF01943 Polysacc_synt: Polysa 96.6 0.0093 2E-07 56.8 8.4 71 98-169 201-272 (273)
42 PF13440 Polysacc_synt_3: Poly 94.2 0.21 4.5E-06 47.0 8.3 65 103-168 184-250 (251)
43 COG4267 Predicted membrane pro 93.5 8.8 0.00019 38.3 28.9 274 143-459 65-363 (467)
44 PF07260 ANKH: Progressive ank 93.3 4.8 0.0001 39.3 15.5 125 340-474 8-141 (345)
45 PF04505 Dispanin: Interferon- 59.3 52 0.0011 25.3 6.9 36 398-433 36-71 (82)
46 COG4267 Predicted membrane pro 50.7 2.9E+02 0.0062 28.1 13.4 93 200-298 322-414 (467)
47 PF02028 BCCT: BCCT family tra 40.7 4.6E+02 0.01 27.6 17.6 23 215-237 88-110 (485)
48 PF11085 YqhR: Conserved membr 36.3 3.1E+02 0.0067 24.4 9.4 55 242-296 65-120 (173)
49 PRK13852 type IV secretion sys 28.1 5.8E+02 0.012 24.9 11.4 54 386-440 30-83 (295)
50 PF05975 EcsB: Bacterial ABC t 23.7 7.7E+02 0.017 24.9 15.0 34 198-231 91-124 (386)
51 PF01102 Glycophorin_A: Glycop 22.9 1.3E+02 0.0029 25.1 4.0 27 305-331 67-93 (122)
52 COG3366 Uncharacterized protei 22.8 7.4E+02 0.016 24.4 22.3 92 226-324 208-307 (311)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=5.7e-46 Score=383.94 Aligned_cols=353 Identities=28% Similarity=0.444 Sum_probs=333.5
Q ss_pred ccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccCcchhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCC
Q 011769 97 VQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSK 176 (478)
Q Consensus 97 ~~~~~~~i~~~~~P~~~~~~~~~~~~~v~~~~ig~lG~~~laa~~~~~~l~~~~~~i~~~gl~~~~~~~vs~~~g~~~~~ 176 (478)
.+...|+++++++|++++++.+.+++++|+.++||+|++++||.++++++..+...+. .|++.++++++||++|+||
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~-~gl~~g~~~liaq~~Ga~~-- 88 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIF-IGLGTGTTVLVAQAIGAGD-- 88 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHcCCc--
Confidence 4457899999999999999999999999999999999999999999999999999999 5699999999999999988
Q ss_pred CCCCCCCCCCCCCCCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCccchHHHHHHHHHHHhhH
Q 011769 177 DSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGA 256 (478)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~ 256 (478)
++++++..+++++++++++++..++.+.+.++++.+++.++| +.+.+.+|+++..++.
T Consensus 89 --------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~--v~~~a~~Yl~i~~~~~ 146 (455)
T COG0534 89 --------------------RKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAE--VLELAAEYLRIILLGA 146 (455)
T ss_pred --------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHh--HHHHHHHHHHHHHHHH
Confidence 788889999999999999999999999999999999998887 9999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhHHHHHhc-cC-CchhHHHHHHHHHHHHHHHHHHHHHHhcCc---
Q 011769 257 PAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYY-FK-LGVTGAAISTVGSQYMVTLLMIWYLNKRTI--- 331 (478)
Q Consensus 257 ~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~v~i~l~~~li~~-~~-~Gi~Gaa~a~~i~~~~~~~~~~~~l~~~~~--- 331 (478)
|+..++.+..+++|+.||+|.+++..+++.++|+++||+|+++ ++ +|+.|+++||++++++..++.+++++|+++
T Consensus 147 ~~~~~~~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~ 226 (455)
T COG0534 147 PFALLSFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLS 226 (455)
T ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 9999999999999999999999999999999999999999999 57 999999999999999999999999987763
Q ss_pred cc---cccccccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011769 332 LS---IPNMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIAS 408 (478)
Q Consensus 332 ~~---~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~aa~~i~~~i~~l~~~~~~ai~~a~~~~v~~ 408 (478)
.. ..++++..+|++++.|.|..++.+.+...+.+.+.+++++|++.+|+|++..++.++.++++.|++++.++++++
T Consensus 227 ~~~~~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~ 306 (455)
T COG0534 227 LFKKKLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAVTILVGQ 306 (455)
T ss_pred hhhhhccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 113334457999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHHHHHHHHHHHHH
Q 011769 409 SFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLVRVYLLLV 474 (478)
Q Consensus 409 ~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~~~~~~~~~~~ 474 (478)
++|++|+|++|+..+.+++++++++...++++.++++++.++|++|+++.+.....+++..+..++
T Consensus 307 ~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~ 372 (455)
T COG0534 307 NLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPF 372 (455)
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988877765
No 2
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=4e-43 Score=362.33 Aligned_cols=348 Identities=24% Similarity=0.290 Sum_probs=321.0
Q ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcc-CcchhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCCC
Q 011769 99 NVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRL-GPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKD 177 (478)
Q Consensus 99 ~~~~~i~~~~~P~~~~~~~~~~~~~v~~~~ig~l-G~~~laa~~~~~~l~~~~~~i~~~gl~~~~~~~vs~~~g~~~~~~ 177 (478)
+..|+++++++|.++++++..+++++|+.++||+ |++++|+++++.++.++...+. .|++.+.++++||++|++|
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~~-~~~~~g~~~lvsq~~Ga~~--- 81 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLL-LFLRMSTTGLTAQAFGAKN--- 81 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCC---
Confidence 3488999999999999999999999999999997 6779999999999999988888 5699999999999999988
Q ss_pred CCCCCCCCCCCCCCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCccchHHHHHHHHHHHhhHH
Q 011769 178 STSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAP 257 (478)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~ 257 (478)
++++++..++++.++++++++..++...+.++++.+++.|+| +.+.+.+|+++..++.|
T Consensus 82 -------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~--v~~~a~~Yl~i~~~~~~ 140 (441)
T PRK10367 82 -------------------PQALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEA--VLEQARRFLEIRWLSAP 140 (441)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHH
Confidence 778889999999999999999998888899999999998887 99999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHhcCcccccc-
Q 011769 258 AVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIPN- 336 (478)
Q Consensus 258 ~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~v~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~l~~~~~~~~~~- 336 (478)
+..+..++++++|+.||+|.+++..+++.++|+++++++++++++|+.|+++|+.+++++..++.+++++++.+..+.+
T Consensus 141 ~~~~~~~~~~~lr~~G~~~~~~~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~ 220 (441)
T PRK10367 141 ASLANLVLLGWLLGVQYARAPVILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISL 220 (441)
T ss_pred HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccH
Confidence 9999999999999999999999999999999999999999998999999999999999999988877776543211111
Q ss_pred --cc---ccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011769 337 --MK---NLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFA 411 (478)
Q Consensus 337 --~~---~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~aa~~i~~~i~~l~~~~~~ai~~a~~~~v~~~~g 411 (478)
++ +..+|+++|.+.|..++...+...+.+.+.+++++|++++|+|+++.++.++.++++.|++++.+++++|++|
T Consensus 221 ~~~~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~G 300 (441)
T PRK10367 221 EMLKTAWRGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYG 300 (441)
T ss_pred HHhhhhhHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc
Confidence 11 1246899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHHHHHHHHHH
Q 011769 412 KGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLVRVYL 471 (478)
Q Consensus 412 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~~~~~~~~ 471 (478)
++|++++|+..+++++++++++.+.++++.++++++.++|++|+++++.....+++....
T Consensus 301 a~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~ 360 (441)
T PRK10367 301 ARDGSQLLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVIL 360 (441)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988776543
No 3
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=2.4e-41 Score=352.39 Aligned_cols=352 Identities=17% Similarity=0.230 Sum_probs=321.5
Q ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccCcchhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCCC
Q 011769 98 QNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKD 177 (478)
Q Consensus 98 ~~~~~~i~~~~~P~~~~~~~~~~~~~v~~~~ig~lG~~~laa~~~~~~l~~~~~~i~~~gl~~~~~~~vs~~~g~~~~~~ 177 (478)
-+..|+++++++|.++++++..+.+++|+.++|++|++++|++++++++..+...+. .|++++.+++++|++|++|
T Consensus 25 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~~~~~-~gl~~g~~~lvsq~~Ga~~--- 100 (478)
T PRK10189 25 VLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAFF-AAIDLGTTVVVAFSLGKRD--- 100 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCC---
Confidence 345889999999999999999999999999999999999999999999998888887 6799999999999999998
Q ss_pred CCCCCCCCCCCCCCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcC--CCCCccchHHHHHHHHHHHhh
Q 011769 178 STSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMG--ISSASSMRIPAQRFLSLRAIG 255 (478)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~v~~~a~~~l~i~~~~ 255 (478)
++++++..++++.++++++++.+++.+.++++++.+++ .|+| +.+.+..|+++..++
T Consensus 101 -------------------~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~--v~~~a~~Yl~i~~~~ 159 (478)
T PRK10189 101 -------------------RRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPE--VKALALTYLELTVWS 159 (478)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChH--HHHHHHHHHHHHHHH
Confidence 78888999999999999999999999999999999995 4555 999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhHHHHHhcc----CCchhHHHHHHHHHHHHHHHHHHHHHHhc-C
Q 011769 256 APAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYF----KLGVTGAAISTVGSQYMVTLLMIWYLNKR-T 330 (478)
Q Consensus 256 ~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~v~i~l~~~li~~~----~~Gi~Gaa~a~~i~~~~~~~~~~~~l~~~-~ 330 (478)
.|+..+..+.++++||.||++.+++++++..++|++++++++++. ++|+.|+++|+.+++++..++.++++.++ +
T Consensus 160 ~~~~~~~~~~~~~lr~~G~~~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~ 239 (478)
T PRK10189 160 YPAAAITLIGSGALRGAGNTKIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFN 239 (478)
T ss_pred HHHHHHHHHHHHHHHhcCchHHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999864 79999999999999999988877766543 2
Q ss_pred cccccc-------ccccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011769 331 ILSIPN-------MKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQ 403 (478)
Q Consensus 331 ~~~~~~-------~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~aa~~i~~~i~~l~~~~~~ai~~a~~ 403 (478)
+..+.+ .+...+|++++.|.|..++.+.......+.+.+++++|++++|+|+++.++.++.+++..|++++.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~ 319 (478)
T PRK10189 240 PALRISLKSYFKPLNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGNALGSAST 319 (478)
T ss_pred ccceeeeccccccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111211 1233478999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHHHHHHHHHHHHH
Q 011769 404 ALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLVRVYLLLV 474 (478)
Q Consensus 404 ~~v~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~~~~~~~~~~~ 474 (478)
+++++++|++|++++|+..+.+.+++++++..+++++.++++++.++|++|+++.+.....+++.....++
T Consensus 320 ~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~ 390 (478)
T PRK10189 320 IITGTRLGKGQIAQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPI 390 (478)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888777766554
No 4
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=1.6e-40 Score=345.69 Aligned_cols=352 Identities=18% Similarity=0.222 Sum_probs=316.7
Q ss_pred ccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccCcchhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCC
Q 011769 97 VQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSK 176 (478)
Q Consensus 97 ~~~~~~~i~~~~~P~~~~~~~~~~~~~v~~~~ig~lG~~~laa~~~~~~l~~~~~~i~~~gl~~~~~~~vs~~~g~~~~~ 176 (478)
+++..|+++++++|.+++++++.+.+++|+.+++|+|++++|+++++.++.+++..+. .|++.+.++++||++|++|
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~~~~~-~gl~~~~~~i~aq~~Ga~~-- 81 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFVSIFC-VGVIAAVGTLVAIRHGAGD-- 81 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCC--
Confidence 3456899999999999999999999999999999999999999999999999988887 6799999999999999988
Q ss_pred CCCCCCCCCCCCCCCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCccchHHHHHHHHHHHhhH
Q 011769 177 DSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGA 256 (478)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~ 256 (478)
++++++..++++.+.++++++..++++ +.++++.+++.|+| +.+.+.+|+++..++.
T Consensus 82 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~e--v~~~~~~Yl~i~~~~~ 138 (464)
T PRK00187 82 --------------------IEGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQ--NVDAAMQFLHLLPFAL 138 (464)
T ss_pred --------------------hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHH--HHHHHHHHHHHHHHHH
Confidence 778889999999999999998877766 67899999998877 9999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhHHHHHhcc----CCchhHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 011769 257 PAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYF----KLGVTGAAISTVGSQYMVTLLMIWYLNKRTIL 332 (478)
Q Consensus 257 ~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~v~i~l~~~li~~~----~~Gi~Gaa~a~~i~~~~~~~~~~~~l~~~~~~ 332 (478)
|+..+....++++|+.||++++++.++++.++|+++||+|+++. ++|+.|+++|+++++++..+..+++++++++.
T Consensus 139 ~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~ 218 (464)
T PRK00187 139 PGYLSFMALRGFTSALGRAGPVMVISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAY 218 (464)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 99999999999999999999999999999999999999999863 59999999999999998888777776653321
Q ss_pred --ccc-----cccccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011769 333 --SIP-----NMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQAL 405 (478)
Q Consensus 333 --~~~-----~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~aa~~i~~~i~~l~~~~~~ai~~a~~~~ 405 (478)
.+. +++...+|+++|+++|.+++.+.+...+.+++.+++++|++++|+|++++++..+.++++.|++++.+++
T Consensus 219 ~~~~~~~~~~~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~~~~~~gi~~a~~~l 298 (464)
T PRK00187 219 AAYPLRKGLSRPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVAFMVPVGLSYAVTMR 298 (464)
T ss_pred hhhhhhccccCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 2223346899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCC--cH---HHHHHHHHHHHHHHHHHHH
Q 011769 406 IASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTS--DT---QVLGIVRSGLLVRVYLLLV 474 (478)
Q Consensus 406 v~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~lf~~--d~---~v~~~~~~~~~~~~~~~~~ 474 (478)
++|++|++|+|++++..+.++.++++++++.++++.++++++.++|++ |+ ++.+....++++.....++
T Consensus 299 vgq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~ 372 (464)
T PRK00187 299 VGQHYGAGRLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELF 372 (464)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999974 44 6777777777766654443
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=3.2e-40 Score=342.75 Aligned_cols=353 Identities=17% Similarity=0.244 Sum_probs=324.2
Q ss_pred ccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-cCcchhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCC
Q 011769 97 VQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSS 175 (478)
Q Consensus 97 ~~~~~~~i~~~~~P~~~~~~~~~~~~~v~~~~ig~-lG~~~laa~~~~~~l~~~~~~i~~~gl~~~~~~~vs~~~g~~~~ 175 (478)
+++..|+++++++|.+++++.+.+++++|+.++|| +|++++|++++++++.++...+. .|++.+.+++++|++|++|
T Consensus 7 ~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~~~-~~~~~g~~~lvsq~~Ga~~- 84 (453)
T PRK09575 7 NQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILGIG-LMVGMGTGSLLSIKRGEGD- 84 (453)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH-HHHhccHHHHHHHHhcCCC-
Confidence 45678999999999999999999999999999999 59999999999999999888877 5699999999999999988
Q ss_pred CCCCCCCCCCCCCCCCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCccchHHHHHHHHHHHhh
Q 011769 176 KDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIG 255 (478)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~ 255 (478)
++++++..++++.++++++++..++.+.++++++.+++.|++ +.+.+.+|+++..++
T Consensus 85 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~--~~~~~~~yl~i~~~~ 141 (453)
T PRK09575 85 ---------------------LEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGR--TLELALQYIQVLIWG 141 (453)
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh--hHHHHHHHHHHHHHH
Confidence 777889999999999999999999999999999999988877 899999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Q 011769 256 APAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIP 335 (478)
Q Consensus 256 ~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~v~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~l~~~~~~~~~ 335 (478)
.|+..+....++++|+.||++.+++.++++.++|+++++++++.+++|+.|+++++++++++..++.+++++++++..++
T Consensus 142 ~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~ 221 (453)
T PRK09575 142 CLFTLGAIALPFLLRNDESPNLATGLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRL 221 (453)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEE
Confidence 99999999999999999999999999999999999999999998899999999999999999999988887665443332
Q ss_pred c-----ccccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011769 336 N-----MKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGA-LAMAAHQICLQVWLSVSMLADAQAASGQALIASS 409 (478)
Q Consensus 336 ~-----~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~-~~~aa~~i~~~i~~l~~~~~~ai~~a~~~~v~~~ 409 (478)
+ .++..+|+++++|.|..++.......+.+.+.+++++|+ +++|+|+++.++..+.+++..|++++.++.++++
T Consensus 222 ~~~~~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~ 301 (453)
T PRK09575 222 TLKELRFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYY 301 (453)
T ss_pred eeccCCcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 2 222236899999999999999999999999999999985 6899999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCC-cHHHHHHHHHHHHHHHHHHHH
Q 011769 410 FAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTS-DTQVLGIVRSGLLVRVYLLLV 474 (478)
Q Consensus 410 ~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~lf~~-d~~v~~~~~~~~~~~~~~~~~ 474 (478)
+|+||+|++|+..+.++.+++.++++.++++.++++++.++|++ ||++.+....++++..+..++
T Consensus 302 ~Ga~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~ 367 (453)
T PRK09575 302 FGARQYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFL 367 (453)
T ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999995 899999999888877765544
No 6
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=3.9e-39 Score=335.41 Aligned_cols=353 Identities=20% Similarity=0.234 Sum_probs=322.6
Q ss_pred ccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccCcchhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCC
Q 011769 97 VQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSK 176 (478)
Q Consensus 97 ~~~~~~~i~~~~~P~~~~~~~~~~~~~v~~~~ig~lG~~~laa~~~~~~l~~~~~~i~~~gl~~~~~~~vs~~~g~~~~~ 176 (478)
.++..|+++++++|.++++++..+.+.+|+.+++++|++++++++++.++..+...+. .|++.+.++.++|++|++|
T Consensus 7 ~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~~~~~-~g~~~a~~~~vs~~~g~~~-- 83 (456)
T PRK01766 7 YKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVILFG-HGLLLALTPIVAQLNGAGR-- 83 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCC--
Confidence 4566999999999999999999999999999999999999999999999877776666 6799999999999999988
Q ss_pred CCCCCCCCCCCCCCCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCccchHHHHHHHHHHHhhH
Q 011769 177 DSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGA 256 (478)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~ 256 (478)
.+++++..++++.+.++++++++++++.+++++..+++.+++ +.+.+..|+++.+++.
T Consensus 84 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~--~~~~~~~yl~i~~~~~ 141 (456)
T PRK01766 84 --------------------RERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPE--VADIAVGYLHALLWGI 141 (456)
T ss_pred --------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHH--HHHHHHHHHHHHHHHH
Confidence 677788999999999999999999999999999999988776 8999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhHHHHHhc----cCCchhHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 011769 257 PAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYY----FKLGVTGAAISTVGSQYMVTLLMIWYLNKRTIL 332 (478)
Q Consensus 257 ~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~v~i~l~~~li~~----~~~Gi~Gaa~a~~i~~~~~~~~~~~~l~~~~~~ 332 (478)
|+..+..+.++++|+.||++++++.++++.++|++++++++++ +++|+.|+++++.+++++..++..++++|+++.
T Consensus 142 ~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~ 221 (456)
T PRK01766 142 PAYLLYQVLRSFIDGLGKTKPTMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRF 221 (456)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhh
Confidence 9999999999999999999999999999999999999999874 368999999999999999999988887664331
Q ss_pred c--c-----ccccccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011769 333 S--I-----PNMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQAL 405 (478)
Q Consensus 333 ~--~-----~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~aa~~i~~~i~~l~~~~~~ai~~a~~~~ 405 (478)
. + .+.+...+|+++++++|.+++...+...+.++..+++++|++++|+|+++.++.++..+++.|++.+.++.
T Consensus 222 ~~~~~~~~~~~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~ 301 (456)
T PRK01766 222 RDFRLFKGLYKPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLLFMLPLSLAMALTIR 301 (456)
T ss_pred hHHHhhccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 12233347899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHHHHHHHHHHHHH
Q 011769 406 IASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLVRVYLLLV 474 (478)
Q Consensus 406 v~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~~~~~~~~~~~ 474 (478)
+++++|++|++++|+..+.++.++++++++.++++.++++++.++|++|+++.+....++++..+..++
T Consensus 302 v~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~ 370 (456)
T PRK01766 302 VGFELGAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFS 370 (456)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988877776554
No 7
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=1.3e-34 Score=289.94 Aligned_cols=334 Identities=30% Similarity=0.490 Sum_probs=306.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCcchhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCC
Q 011769 110 PAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDSTSDSSCPNVSY 189 (478)
Q Consensus 110 P~~~~~~~~~~~~~v~~~~ig~lG~~~laa~~~~~~l~~~~~~i~~~gl~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~ 189 (478)
|.++.+++..+...+|+.+++++|++++++++++.++.++...+. .|++++..+.++|++|++|
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~~~~~-~~i~~~~~~~~s~~~g~~~--------------- 64 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLFSIL-MGLGTATTALVAQAVGAGN--------------- 64 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHHHH-HHHHHhHHHHHHHHHCCCC---------------
Confidence 788999999999999999999999999999999999888777777 6799999999999998877
Q ss_pred CCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 011769 190 NGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIF 269 (478)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l 269 (478)
.++.++..++.+.+..+++++.+++++++++++..+++.+++ ..+.+..++++..+..++..+....++++
T Consensus 65 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~l~i~~~~~~~~~~~~~~~~~l 135 (342)
T TIGR00797 65 -------YQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGE--VAELAQDYLRILILGIPAYLLNFVLRGFL 135 (342)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666778999999999999999999999999999999986665 78899999999999999999999999999
Q ss_pred HhCCCCchHHHHHHHHHHHHHHhHHHHHh-ccC-CchhHHHHHHHHHHHHHHHHHHHHHHhcCccc-----cccccccch
Q 011769 270 RGFKDTRTPVFCLGLGNFSAVFMFPMLMY-YFK-LGVTGAAISTVGSQYMVTLLMIWYLNKRTILS-----IPNMKNLHF 342 (478)
Q Consensus 270 ~g~g~~~~~~~~~~~~~~v~i~l~~~li~-~~~-~Gi~Gaa~a~~i~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~ 342 (478)
|+.||++.+++.++++.++++++++++++ .++ +|+.|+++++.+++++..++.+++.+|+.+.. +.++++..+
T Consensus 136 ~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (342)
T TIGR00797 136 RGQGDTKTPMYITLIGNVINIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVL 215 (342)
T ss_pred HhcCCchHHHHHHHHHHHHHHHHhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHH
Confidence 99999999999999999999999999887 567 88999999999999999998888877632211 123344567
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHH
Q 011769 343 GDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKGDYNTVKEIT 422 (478)
Q Consensus 343 ~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~aa~~i~~~i~~l~~~~~~ai~~a~~~~v~~~~g~~~~~~~~~~~ 422 (478)
|++++++.|.+++.+..++...+++.+++.+|++++++|++++++..+..+++.+++++.+|.+++++|++|.+++++..
T Consensus 216 k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 295 (342)
T TIGR00797 216 KRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVA 295 (342)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHHHHHHH
Q 011769 423 HFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLVR 468 (478)
Q Consensus 423 ~~~l~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~~~~~ 468 (478)
++++++..+++.+..+++.++++++.++|++||++.+.+...+++.
T Consensus 296 ~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 296 RVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999888764
No 8
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=1.1e-31 Score=275.82 Aligned_cols=352 Identities=19% Similarity=0.213 Sum_probs=325.6
Q ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccCcchhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCCC
Q 011769 98 QNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKD 177 (478)
Q Consensus 98 ~~~~~~i~~~~~P~~~~~~~~~~~~~v~~~~ig~lG~~~laa~~~~~~l~~~~~~i~~~gl~~~~~~~vs~~~g~~~~~~ 177 (478)
.++.|++++++.|+++..+.+++.+++++.++||+|+.++|+.+++++..+....-...|+..+..++++|++|+++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~--- 100 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKK--- 100 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccc---
Confidence 46689999999999999999999999999999999999999999999999997776668899999999999999988
Q ss_pred CCCCCCCCCCCCCCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCccchHHHHHHHHHHHhhHH
Q 011769 178 STSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAP 257 (478)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~ 257 (478)
++....+.+++..+....+++...+ +.+.++++..+++|++ +...+..|.++..+..+
T Consensus 101 -------------------~~~lg~~lqrs~~~l~~~~~~~~~l-~~~~~~il~~lgq~~~--i~~~a~~y~~~~ip~~~ 158 (473)
T KOG1347|consen 101 -------------------FTALGVYLQRSGIVLLVQGLPISLL-ILNSEPILLLLGQDPD--ISRDAGSYAFMLIPGLF 158 (473)
T ss_pred -------------------cchhhHHHHHHHHHHHHHHHHHHHH-HHccHHHHHHhCCChh--HHHHHhhhHhhhcchhh
Confidence 6667778888888888888888777 5577999999999988 99999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHhcC-cc--cc
Q 011769 258 AVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRT-IL--SI 334 (478)
Q Consensus 258 ~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~v~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~l~~~~-~~--~~ 334 (478)
.+.....++.++|+++++.+..++.....++|+++++++++.+++|..|++++..+++++...++..+..... .. ..
T Consensus 159 a~~~~~~l~~~lq~Q~~~~~~~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~ 238 (473)
T KOG1347|consen 159 SYAVSFPLAKFLQAQSITLPLLVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSG 238 (473)
T ss_pred hhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987644 11 11
Q ss_pred ccccccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011769 335 PNMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQG--ALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAK 412 (478)
Q Consensus 335 ~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g--~~~~aa~~i~~~i~~l~~~~~~ai~~a~~~~v~~~~g~ 412 (478)
++++...++++++++.|..++.+.+++.+.+.....+.++ +.++++.+++.++....++++.+++.+.++++++.+|+
T Consensus 239 ~s~~~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGa 318 (473)
T KOG1347|consen 239 FSGEFDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGA 318 (473)
T ss_pred hhHhhhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcC
Confidence 2223445799999999999999999999999999999997 69999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHHHHHHHHHHHHH
Q 011769 413 GDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLVRVYLLLV 474 (478)
Q Consensus 413 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~~~~~~~~~~~ 474 (478)
++++.+|......+..+++++...++.+...++.+..+|++|+++.+.+.+..|+......+
T Consensus 319 g~p~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~ 380 (473)
T KOG1347|consen 319 GKPKRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILL 380 (473)
T ss_pred CChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999998877654
No 9
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.97 E-value=7.1e-27 Score=246.22 Aligned_cols=340 Identities=13% Similarity=0.115 Sum_probs=278.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhc-cCcchh-hhhhhhHHHHHHHHHHhh-hhhhHHHHHHHHHHhhcCCCCCCCC
Q 011769 104 LIMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLEL-ASAGVSTSIFNILSKVFN-IPLLSVATSFVAEDISRSSSKDSTS 180 (478)
Q Consensus 104 i~~~~~P~~~~~~~~~~~~~v~~~~ig~-lG~~~l-aa~~~~~~l~~~~~~i~~-~gl~~~~~~~vs~~~g~~~~~~~~~ 180 (478)
+.|-+.-..+.++.+.+++++|+.+++| +|++++ ++++++.++.+.+..+.. .|++.+..+.+.++ +++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~---~~~----- 73 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKA---KKK----- 73 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---Hhh-----
Confidence 5677888999999999999999999999 999999 799999999988877654 45666666555544 221
Q ss_pred CCCCCCCCCCCCCcccchhhHhHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHhcC--CCCCccchHHHHHHHHHHHhhHH
Q 011769 181 DSSCPNVSYNGCDESTDRKLLPSVSTALVLAL-TIGILEALAMYFGSGLFLDIMG--ISSASSMRIPAQRFLSLRAIGAP 257 (478)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~--~~~~~~v~~~a~~~l~i~~~~~~ 257 (478)
.++.++...+.+.... +.+++..++.+++++++..+++ .+++ ..+.+..|+++..++.|
T Consensus 74 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~--~~~~~~~~l~i~~~~~~ 135 (502)
T TIGR01695 74 ----------------EKEARRAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADE--TRSLAVSLTRIMFPYLL 135 (502)
T ss_pred ----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc--HHHHHHHHHHHHHHHHH
Confidence 1233344555555444 4445567777888999999884 3444 78899999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhHHHHHhccCCchhHHH--HHHHHHHHHHHHHHHHHHHhcCccccc
Q 011769 258 AVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAA--ISTVGSQYMVTLLMIWYLNKRTILSIP 335 (478)
Q Consensus 258 ~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~v~i~l~~~li~~~~~Gi~Gaa--~a~~i~~~~~~~~~~~~l~~~~~~~~~ 335 (478)
+..+..+.++++|+.||++.+++.+++.++++++..+ ....++|..|++ +++++++.+..++.+++++|++.++++
T Consensus 136 ~~~~~~~~~~~l~~~~~~~~~~~~~i~~~i~~i~~~~--~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 213 (502)
T TIGR01695 136 LISLAAVFGGILNARKRFFIPSFSPILFNIGVILSLL--FFDWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKP 213 (502)
T ss_pred HHHHHHHHHHHHhccCeeHHHHHHHHHHHHHHHHHHH--HHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccC
Confidence 9999999999999999999999999999988766433 334589999998 999999999999888877665433333
Q ss_pred c--ccccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhc
Q 011769 336 N--MKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSM-LADAQAASGQALIASSFAK 412 (478)
Q Consensus 336 ~--~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~aa~~i~~~i~~l~~~-~~~ai~~a~~~~v~~~~g~ 412 (478)
+ ++...+|++++++.|..+......+...+++.+.+.+|++++++|+.+.++..+... +..+++++..|.+++++|+
T Consensus 214 ~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~ 293 (502)
T TIGR01695 214 RFNFRDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASE 293 (502)
T ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3 334567999999999999999999999999999777899999999999999888754 6789999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCC----cHHHHHHHHHHHHHHHHH
Q 011769 413 GDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTS----DTQVLGIVRSGLLVRVYL 471 (478)
Q Consensus 413 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~lf~~----d~~v~~~~~~~~~~~~~~ 471 (478)
+|.+++|+..+++.++...++++.++++.++++++.++|.+ |++........+.+..+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~ 356 (502)
T TIGR01695 294 GNWNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLG 356 (502)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999976 556666666665554443
No 10
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.96 E-value=1.1e-25 Score=236.26 Aligned_cols=327 Identities=15% Similarity=0.209 Sum_probs=275.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhc-cCcchhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCCCCCCCCC
Q 011769 105 IMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDSTSDSS 183 (478)
Q Consensus 105 ~~~~~P~~~~~~~~~~~~~v~~~~ig~-lG~~~laa~~~~~~l~~~~~~i~~~gl~~~~~~~vs~~~g~~~~~~~~~~~~ 183 (478)
.|-+.|.+++++...+.+++|+.+++| +|++++|+++.+.++.++...+...|++.+..+.++|..|++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~--------- 72 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKND--------- 72 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccc---------
Confidence 366899999999999999999999999 8999999999999999999888878999999999999988776
Q ss_pred CCCCCCCCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCccchHHHHHHHHHHHhhHHHHHHHH
Q 011769 184 CPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSL 263 (478)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~ 263 (478)
+++.++.+++.+++.++.+++..++++.+++++...++++++ ...++++..+..|+..+..
T Consensus 73 -------------~~~~~~~~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~------~~~~l~~~~~~~~~~~~~~ 133 (488)
T TIGR02900 73 -------------RKNIKKILKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDER------SLYSLLVICPAMPFIALSS 133 (488)
T ss_pred -------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChh------HHHHHHHHHHHHHHHHHHH
Confidence 566678899999999999999999999999998887765554 2356888889999999999
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHhHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHhcCc-ccccc-
Q 011769 264 AIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYY-----FKLGVTGAAISTVGSQYMVTLLMIWYLNKRTI-LSIPN- 336 (478)
Q Consensus 264 ~~~~~l~g~g~~~~~~~~~~~~~~v~i~l~~~li~~-----~~~Gi~Gaa~a~~i~~~~~~~~~~~~l~~~~~-~~~~~- 336 (478)
+.++++|+.+|++..++.+++..++++.++..+++. .++|+.|+++++.+++++..++.+++++|+++ +.++.
T Consensus 134 ~~~~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (488)
T TIGR02900 134 VLKGYFQGISNMKPPAYIQVIEQIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPF 213 (488)
T ss_pred HHHHHHhhhccchHhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 999999999999999999999999988776655542 24678889999999999999888776654332 11111
Q ss_pred -----ccccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc----C---hh---HHHHH-HHHHHHHHHHHHHHHHHHH
Q 011769 337 -----MKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQ----G---AL---AMAAH-QICLQVWLSVSMLADAQAA 400 (478)
Q Consensus 337 -----~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~----g---~~---~~aa~-~i~~~i~~l~~~~~~ai~~ 400 (478)
.++..+|++++++.|.+++.+...+...+++.++++. | .+ .++.| +++.++..+...+..++++
T Consensus 214 ~~~~~~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~ 293 (488)
T TIGR02900 214 FDYKSEGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLST 293 (488)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHH
Confidence 1123578999999999999999999999999988764 2 12 22223 3556777888888999999
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHH
Q 011769 401 SGQALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLG 459 (478)
Q Consensus 401 a~~~~v~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~ 459 (478)
+..|+++++.|++|.+++++..++.++++..++.++++++.++++++..+|.++++...
T Consensus 294 ~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 352 (488)
T TIGR02900 294 ALVPDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPDAGN 352 (488)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHH
Confidence 99999999999999999999999999999999999999999999999999887665433
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=99.96 E-value=2.1e-25 Score=229.58 Aligned_cols=324 Identities=16% Similarity=0.113 Sum_probs=274.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhc-cCcchhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCCCCCCCC
Q 011769 104 LIMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDSTSDS 182 (478)
Q Consensus 104 i~~~~~P~~~~~~~~~~~~~v~~~~ig~-lG~~~laa~~~~~~l~~~~~~i~~~gl~~~~~~~vs~~~g~~~~~~~~~~~ 182 (478)
++|-+.....+++...+.+++...++.| +|++++|.++....+...+..+...|++.+.++.++|+ ++|
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~-------- 72 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQ-------- 72 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCC--------
Confidence 5677778888999999999999999999 99999999999999999888887788999999999987 333
Q ss_pred CCCCCCCCCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCccchHHHHHHHHHHHhhHHHHHHH
Q 011769 183 SCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLS 262 (478)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~ 262 (478)
+++.++..++++.+.++.+++.+++.+.+.+++...++.+++ ...++.+..+..++..+.
T Consensus 73 --------------~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 132 (416)
T PRK15099 73 --------------PQQLRAVVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTD------YQGVVRAVALIQMGIAWA 132 (416)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh------HHHHHHHHHHHHHHHHHH
Confidence 455568899999999999999999999999999988876554 235666667767777888
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHHhHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHhcCcc----cccccc
Q 011769 263 LAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTIL----SIPNMK 338 (478)
Q Consensus 263 ~~~~~~l~g~g~~~~~~~~~~~~~~v~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~l~~~~~~----~~~~~~ 338 (478)
...++.+|+.||++.++...+++.++|+.+ +++.+. ..|+.|+++++++++.+..+..+++++|+++. .+++++
T Consensus 133 ~~~~~~lr~~~~~~~~~~~~~~~~~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (416)
T PRK15099 133 NLLLAILKGFRDAAGNALSLIVGSLIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPSWD 210 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhccCC
Confidence 999999999999999999999999999877 444442 24999999999999999988877777654331 123334
Q ss_pred ccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-hcChhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCChH
Q 011769 339 NLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAA-RQGALAMAAHQICLQVWL-SVSMLADAQAASGQALIASSFAKGDYN 416 (478)
Q Consensus 339 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~-~~g~~~~aa~~i~~~i~~-l~~~~~~ai~~a~~~~v~~~~g~~~~~ 416 (478)
...+|+++++|.|..++....++...+++.+++ .+|+++++.|+++.++.. +...+..+++++.+|.++++ +|.+
T Consensus 211 ~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~ 287 (416)
T PRK15099 211 NGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKR 287 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChH
Confidence 445799999999999999999999999999996 779999999999999977 45899999999999999995 6789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcH--HHHHHHH
Q 011769 417 TVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDT--QVLGIVR 462 (478)
Q Consensus 417 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~lf~~d~--~v~~~~~ 462 (478)
+.++..++..+....++.+.++++.++++++.++|.+|+ ++.+...
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~~~~~~~~~~ 335 (416)
T PRK15099 288 DITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNKFTAMRDLFA 335 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999999999999999999999999999999999998876 3444433
No 12
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.94 E-value=1.5e-25 Score=231.88 Aligned_cols=258 Identities=19% Similarity=0.272 Sum_probs=231.2
Q ss_pred cccc-cc-ccccchhHHHHHHhhhcccCceEEEeecCCCCccccccccccCCCCcccccCCCCCcCCcccccCCCCCCCC
Q 011769 6 FIGG-RS-CGITGTSFQRRAINKMGKAFPIYSMVIAPPNCSFGVINRAKNGFNPAIMCCGSVSDQHASDYITINPSGVGE 83 (478)
Q Consensus 6 ~~~~-~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (478)
||++ ++ ||+.|+|++ |++++.........++.+.+++ . .....+..++
T Consensus 186 lI~g~~g~lGv~GAA~A-T~ia~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~-------------------------- 235 (455)
T COG0534 186 LIFGLFGGLGVAGAALA-TVIARWIGALLLLIYLLRKKRL-L--SLFKKKLLKP-------------------------- 235 (455)
T ss_pred HHHhccccccchhHHHH-HHHHHHHHHHHHHHHHHhcchh-h--hhhhhhccCC--------------------------
Confidence 5556 56 999999999 9999999999999898888764 1 1111111122
Q ss_pred cccchhhhcccccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccCcchhhhhhhhHHHHHHHHHHhhhhhhHHHH
Q 011769 84 SESRKSAATSQSCVQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVAT 163 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~~~v~~~~ig~lG~~~laa~~~~~~l~~~~~~i~~~gl~~~~~ 163 (478)
+.+..|+++++++|..++++.+.....+.+.+++++|++.+|+++++.++.++.+++. .|++++++
T Consensus 236 -------------~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~-~gi~~a~~ 301 (455)
T COG0534 236 -------------DRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPP-FGIAQAVT 301 (455)
T ss_pred -------------CHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3466999999999999999999999999999999999999999999999999999999 67999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCccchH
Q 011769 164 SFVAEDISRSSSKDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRI 243 (478)
Q Consensus 164 ~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~ 243 (478)
++++|++|+|| .+++++..+.++.++.+++++.+++++++++++.++|.++++ +.+
T Consensus 302 ~lvG~~~Ga~~----------------------~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~--v~~ 357 (455)
T COG0534 302 ILVGQNLGAGN----------------------YKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPE--VIA 357 (455)
T ss_pred HHHHHHhCCCC----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH--HHH
Confidence 99999999999 888899999999999999999999999999999999998855 999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH-HHHHHhHHHHHhccCCchhHHHHHHHHHHHHHHHHH
Q 011769 244 PAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGN-FSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLM 322 (478)
Q Consensus 244 ~a~~~l~i~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~-~v~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~ 322 (478)
.+..++++..+..++.+.+.+..+.+||.||+|.+++.++++. .+.+++.+++.+.+ +|..|+|++...++.+..+..
T Consensus 358 ~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~ 436 (455)
T COG0534 358 LAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILL 436 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 66788888887765 999999999999999999999
Q ss_pred HHHHHhcCcc
Q 011769 323 IWYLNKRTIL 332 (478)
Q Consensus 323 ~~~l~~~~~~ 332 (478)
.++++++++.
T Consensus 437 ~~~~~~~~~~ 446 (455)
T COG0534 437 LLRLRRGRWR 446 (455)
T ss_pred HHHHHHhhhh
Confidence 9999876553
No 13
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.93 E-value=8.7e-25 Score=227.67 Aligned_cols=209 Identities=15% Similarity=0.085 Sum_probs=192.7
Q ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccCcchhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCCC
Q 011769 98 QNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKD 177 (478)
Q Consensus 98 ~~~~~~i~~~~~P~~~~~~~~~~~~~v~~~~ig~lG~~~laa~~~~~~l~~~~~~i~~~gl~~~~~~~vs~~~g~~~~~~ 177 (478)
.+..|+++++++|..++++++.....+|+.+++++|++++|++++++++.++...+. .|++.+.+++++|++|+||
T Consensus 232 ~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~~~~~-~gi~~a~~~lvgq~~Ga~~--- 307 (464)
T PRK00187 232 RAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVAFMVP-VGLSYAVTMRVGQHYGAGR--- 307 (464)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCC---
Confidence 445899999999999999999999999999999999999999999999999988888 6799999999999999998
Q ss_pred CCCCCCCCCCCCCCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCC--CCC-ccchHHHHHHHHHHHh
Q 011769 178 STSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGI--SSA-SSMRIPAQRFLSLRAI 254 (478)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~-~~v~~~a~~~l~i~~~ 254 (478)
.+++++..+.++.++.+++++.+++++.+++++.+++.. +++ +|+.+.+..|+++.++
T Consensus 308 -------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~ 368 (464)
T PRK00187 308 -------------------LLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAW 368 (464)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHH
Confidence 788889999999999999999999999999999999964 221 2488999999999999
Q ss_pred hHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH-HHHHHhHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 011769 255 GAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGN-FSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKR 329 (478)
Q Consensus 255 ~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~-~v~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~l~~~ 329 (478)
+.++..++.+..+++||.||++.+++..+++. ++++++++++.+.+++|+.|+|+++.+++.+..++....++++
T Consensus 369 ~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~ 444 (464)
T PRK00187 369 FELFDGTQTIAMGAIRGLKDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWK 444 (464)
T ss_pred HHHhhHHHHHHHHhHhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998 8999999999998899999999999999999988877766443
No 14
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.92 E-value=1.4e-23 Score=219.10 Aligned_cols=257 Identities=16% Similarity=0.151 Sum_probs=219.0
Q ss_pred ccccccchhHHHHHHhhhcccCceEEEeecCCCCccccccccccCCCCcccccCCCCCcCCcccccCCCCCCCCcccchh
Q 011769 10 RSCGITGTSFQRRAINKMGKAFPIYSMVIAPPNCSFGVINRAKNGFNPAIMCCGSVSDQHASDYITINPSGVGESESRKS 89 (478)
Q Consensus 10 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (478)
+++|+.|++++ +.+++........+++.+.++..... +.++.+.+
T Consensus 208 ~~lGv~Gaa~A-t~is~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------------------------------- 252 (478)
T PRK10189 208 QGLGFVGAGLG-LTISRYIGAVAIIWVLMIGFNPALRI--SLKSYFKP-------------------------------- 252 (478)
T ss_pred CccchHHHHHH-HHHHHHHHHHHHHHHHHhccCcccee--eecccccc--------------------------------
Confidence 58999999999 99999887765544444332211110 10000000
Q ss_pred hhcccccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccCcchhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 011769 90 AATSQSCVQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAED 169 (478)
Q Consensus 90 ~~~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~~~v~~~~ig~lG~~~laa~~~~~~l~~~~~~i~~~gl~~~~~~~vs~~ 169 (478)
.+.+..|+++++++|..+......+...+.+.+++++|++++|+++++.++.++...+. .|++++.+++++|+
T Consensus 253 ------~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~~~~~-~gi~~A~~~lvg~~ 325 (478)
T PRK10189 253 ------LNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALINLPG-NALGSASTIITGTR 325 (478)
T ss_pred ------CCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 02345899999999999999999999999999999999999999999999999988887 67999999999999
Q ss_pred hhcCCCCCCCCCCCCCCCCCCCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCccchHHHHHHH
Q 011769 170 ISRSSSKDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFL 249 (478)
Q Consensus 170 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l 249 (478)
+|+|| .+++++..+.++.++.+.+++++++++++++++..+|.+|+| +.+.+..++
T Consensus 326 ~Ga~~----------------------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~--v~~~~~~~l 381 (478)
T PRK10189 326 LGKGQ----------------------IAQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPD--VKHVVKILI 381 (478)
T ss_pred hCCCC----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHHHH
Confidence 99999 888889999999999999999999999999999999987666 999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH-HHHHHhHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 011769 250 SLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGN-FSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNK 328 (478)
Q Consensus 250 ~i~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~-~v~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~l~~ 328 (478)
++.++..|+.+++.+..+.+||.||++.++++++++. ++.+++.+++.+..++|+.|+|++..+++.+..++..+++++
T Consensus 382 ~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~ 461 (478)
T PRK10189 382 WLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVS 461 (478)
T ss_pred HHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999988 678888888877778999999999999999999988888766
Q ss_pred cCcc
Q 011769 329 RTIL 332 (478)
Q Consensus 329 ~~~~ 332 (478)
.++.
T Consensus 462 ~~W~ 465 (478)
T PRK10189 462 GRWL 465 (478)
T ss_pred Cccc
Confidence 5443
No 15
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.91 E-value=4.6e-23 Score=214.66 Aligned_cols=254 Identities=16% Similarity=0.104 Sum_probs=218.2
Q ss_pred ccccccchhHHHHHHhhhcccCceEEEeecCCCCccccccccccCCCCcccccCCCCCcCCcccccCCCCCCCCcccchh
Q 011769 10 RSCGITGTSFQRRAINKMGKAFPIYSMVIAPPNCSFGVINRAKNGFNPAIMCCGSVSDQHASDYITINPSGVGESESRKS 89 (478)
Q Consensus 10 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (478)
+.+|+.|++++ +.+++........+++.+.+... +. +.....
T Consensus 189 ~~~Gv~Gaa~a-t~is~~~~~~~~~~~~~~~~~~~----~~--~~~~~~------------------------------- 230 (456)
T PRK01766 189 PELGGVGCGVA-TAIVYWVMFLAMLIYIKRARRFR----DF--RLFKGL------------------------------- 230 (456)
T ss_pred cccccccHHHH-HHHHHHHHHHHHHHHHHhChhhh----HH--Hhhccc-------------------------------
Confidence 57999999998 99888887775544433322110 00 000000
Q ss_pred hhcccccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccCcchhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 011769 90 AATSQSCVQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAED 169 (478)
Q Consensus 90 ~~~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~~~v~~~~ig~lG~~~laa~~~~~~l~~~~~~i~~~gl~~~~~~~vs~~ 169 (478)
...+.+..|+++++++|..+++..+.+...+++.+++++|++++|+++++.++.++...+. .|++.+.++.++|+
T Consensus 231 ----~~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~-~gl~~a~~~~v~~~ 305 (456)
T PRK01766 231 ----YKPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLLFMLP-LSLAMALTIRVGFE 305 (456)
T ss_pred ----cCCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 0002345899999999999999999999999999999999999999999999999998887 67999999999999
Q ss_pred hhcCCCCCCCCCCCCCCCCCCCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCccchHHHHHHH
Q 011769 170 ISRSSSKDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFL 249 (478)
Q Consensus 170 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l 249 (478)
+|+|| ++++++..+.++.++..++++.+++++.+++++..+|.+|++ +.+.+..|+
T Consensus 306 ~Ga~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~--v~~~~~~~l 361 (456)
T PRK01766 306 LGAGR----------------------TLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPE--VVALASHLL 361 (456)
T ss_pred hcCCC----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHHHHH
Confidence 99998 788889999999999999999999999999999999987776 999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH-HHHHHhHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 011769 250 SLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGN-FSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNK 328 (478)
Q Consensus 250 ~i~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~-~v~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~l~~ 328 (478)
++..+..++.+++.+.++++||.||++.+++..+++. ++++++.+++.+.+++|+.|+|+++.+++++..++.++++++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~ 441 (456)
T PRK01766 362 LFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRK 441 (456)
T ss_pred HHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988 789999999988888999999999999999999988888766
Q ss_pred cC
Q 011769 329 RT 330 (478)
Q Consensus 329 ~~ 330 (478)
..
T Consensus 442 ~~ 443 (456)
T PRK01766 442 LQ 443 (456)
T ss_pred HH
Confidence 43
No 16
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.91 E-value=7e-23 Score=212.89 Aligned_cols=254 Identities=11% Similarity=0.073 Sum_probs=216.8
Q ss_pred ccccccccccchhHHHHHHhhhcccCceEEEeecCCCCccccccccccCCCCcccccCCCCCcCCcccccCCCCCCCCcc
Q 011769 6 FIGGRSCGITGTSFQRRAINKMGKAFPIYSMVIAPPNCSFGVINRAKNGFNPAIMCCGSVSDQHASDYITINPSGVGESE 85 (478)
Q Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (478)
||+++++|+.|++++ +.+++........+++.+.++. ... .+ +.+.+
T Consensus 182 li~~~~~Gi~Gaa~A-t~is~~~~~~~~~~~~~~~~~~-~~~-~~--~~~~~---------------------------- 228 (453)
T PRK09575 182 FIGWLDWGLTGAAIA-TALAQLVVTVLGLGYFFSSRAN-IRL-TL--KELRF---------------------------- 228 (453)
T ss_pred HHHhCCchhHHHHHH-HHHHHHHHHHHHHHHHHCCCce-eEE-ee--ccCCc----------------------------
Confidence 567788999999999 9999988877655555433221 111 00 01111
Q ss_pred cchhhhcccccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccCc-chhhhhhhhHHHHHHHHHHhhhhhhHHHHH
Q 011769 86 SRKSAATSQSCVQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGP-LELASAGVSTSIFNILSKVFNIPLLSVATS 164 (478)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~~~v~~~~ig~lG~-~~laa~~~~~~l~~~~~~i~~~gl~~~~~~ 164 (478)
+++..|+++++++|..+++....+...+.+.+++++|+ +++|+++++.++.++...+. .|++.+.++
T Consensus 229 -----------~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~~~~~-~gi~~a~~~ 296 (453)
T PRK09575 229 -----------NWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLYYLVA-EGIAEGMQP 296 (453)
T ss_pred -----------CHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH-HHHHHhhHH
Confidence 34458999999999999999999999999999999885 58999999999999988887 679999999
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCCCCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCC-CCCccchH
Q 011769 165 FVAEDISRSSSKDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGI-SSASSMRI 243 (478)
Q Consensus 165 ~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~v~~ 243 (478)
+++|++|+|| .+++++..+.++.+++..+++.+++++.+++++..+|+. |+| +.+
T Consensus 297 lvg~~~Ga~~----------------------~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~--v~~ 352 (453)
T PRK09575 297 PVSYYFGARQ----------------------YDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSE--LIA 352 (453)
T ss_pred HHHHHhcCCC----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChH--HHH
Confidence 9999999999 788889999999999999999999999999999999985 455 899
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhHHHHHhccCCchhHHHHHHHHHHHHHHHHHH
Q 011769 244 PAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMI 323 (478)
Q Consensus 244 ~a~~~l~i~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~v~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~ 323 (478)
.+..|+++..++.++.+++.+..+++||.||++.+++.++...+++++..+++.. .+|+.|+|+++.+++++..++.+
T Consensus 353 ~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~ip~~~ll~~--~~G~~Gvw~a~~~~~~~~~~~~~ 430 (453)
T PRK09575 353 ETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGNMLIQLPFLFILPK--WLGVDGVWLAMPLSNIALSLVVA 430 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHHHHHHHHH--HHCcchHhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888888888877754 38999999999999999988887
Q ss_pred HHHHhcC
Q 011769 324 WYLNKRT 330 (478)
Q Consensus 324 ~~l~~~~ 330 (478)
+.++++.
T Consensus 431 ~~~~~~~ 437 (453)
T PRK09575 431 PMLWRDV 437 (453)
T ss_pred HHHHHHH
Confidence 7776643
No 17
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.90 E-value=3.4e-20 Score=192.10 Aligned_cols=318 Identities=15% Similarity=0.119 Sum_probs=269.0
Q ss_pred cCcch-hhhhhhhHHHHHHHHHHhh-hhhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcccchhhHhHHHHHHH
Q 011769 132 LGPLE-LASAGVSTSIFNILSKVFN-IPLLSVATSFVAEDISRSSSKDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALV 209 (478)
Q Consensus 132 lG~~~-laa~~~~~~l~~~~~~i~~-~gl~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (478)
+|+.+ ..++.++.++.+++..+.. .++..+..|...+.. +++ .++.++..++.+.
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~----------------------~~~~~~f~~~~~~ 61 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKG----------------------EEEARRFISTLLT 61 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccC----------------------HHHHHHHHHHHHH
Confidence 67654 4599999999999987764 347788888888875 333 4455677888888
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhcCCCCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 011769 210 LALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSA 289 (478)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~v~ 289 (478)
+..++.++++++.+++++++...+....+++..+.+.+++++..+..++.++..+..+++|+++|...+....++.++..
T Consensus 62 ~~~~~~~~l~~l~~lfa~~iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~ 141 (451)
T PF03023_consen 62 ILLIISLLLTLLGILFAPPIVRLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSI 141 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH
Confidence 88889999999999999999999865555568999999999999999999999999999999999999999999988775
Q ss_pred HHhHHHHHhccCCc---hhHHHHHHHHHHHHHHHHHHHHHHhcCccccccc--cccchHHHHHhhHHHHHHHHHHHHHHH
Q 011769 290 VFMFPMLMYYFKLG---VTGAAISTVGSQYMVTLLMIWYLNKRTILSIPNM--KNLHFGDYLRSGGYLLGRTLAAVMTIT 364 (478)
Q Consensus 290 i~l~~~li~~~~~G---i~Gaa~a~~i~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~l~~~~p~~~~~~~~~~~~~ 364 (478)
++...+ .....| +.+.++|.+++..+..++.+...+|.+.+.++++ ++.+.|++++...|.++.....++...
T Consensus 142 I~~~~~--~~~~~~~~~i~~la~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~qi~~l 219 (451)
T PF03023_consen 142 ILSLLL--LSNSWGQENIYALAWGVLIGAIIQFLIQLPYLRRFGFRFRPKFDWRDPNLKRFLKLAIPLLLSSSISQINIL 219 (451)
T ss_pred HHHHHH--HHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 553333 333566 8999999999999999999999988776555544 445689999999999999999999999
Q ss_pred HHHHHHHhcChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011769 365 LSTSIAARQGALAMAAHQICLQVWLSVS-MLADAQAASGQALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGAS 443 (478)
Q Consensus 365 ~~~~~~~~~g~~~~aa~~i~~~i~~l~~-~~~~ai~~a~~~~v~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 443 (478)
+++.+++.+++..+++++.+.++..+.. .+..+++++..|.++++..++|.++.++..+++++....+.+|+++++.++
T Consensus 220 v~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~ 299 (451)
T PF03023_consen 220 VDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVL 299 (451)
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999876 667899999999999999999999999999999999999999999999999
Q ss_pred hHHHhhccC----CcHHHHHHHHHHHHHHHHHHHH
Q 011769 444 FNYLATLFT----SDTQVLGIVRSGLLVRVYLLLV 474 (478)
Q Consensus 444 ~~~i~~lf~----~d~~v~~~~~~~~~~~~~~~~~ 474 (478)
++++.+++. -|++..+.+...+.++...+++
T Consensus 300 a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~ 334 (451)
T PF03023_consen 300 AEPIVRLLFERGAFTAEDTQLTASALRIYALGLPF 334 (451)
T ss_pred hHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHH
Confidence 999999874 2556666666666555554443
No 18
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.90 E-value=2.5e-19 Score=183.58 Aligned_cols=329 Identities=14% Similarity=0.090 Sum_probs=273.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-cCcchhh-hhhhhHHHHHHHHHHhhh-hhhHHHHHHHHHHhhcCCCCC
Q 011769 101 QLDLIMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLELA-SAGVSTSIFNILSKVFNI-PLLSVATSFVAEDISRSSSKD 177 (478)
Q Consensus 101 ~~~i~~~~~P~~~~~~~~~~~~~v~~~~ig~-lG~~~la-a~~~~~~l~~~~~~i~~~-gl~~~~~~~vs~~~g~~~~~~ 177 (478)
...++|-++-....++++.+.+++...+++. +|+...+ |+.++.++.|++-.+..- .++++..|...++..++.
T Consensus 6 ~~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~--- 82 (518)
T COG0728 6 KMSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEG--- 82 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcch---
Confidence 3457888888899999999999999999999 9986655 999999999999988753 245666777776643322
Q ss_pred CCCCCCCCCCCCCCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCC-CccchHHHHHHHHHHHhhH
Q 011769 178 STSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISS-ASSMRIPAQRFLSLRAIGA 256 (478)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~v~~~a~~~l~i~~~~~ 256 (478)
.++.++..+........+.+.++++..++++++.+.+..+. +++....+....++..+..
T Consensus 83 -------------------~~~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl 143 (518)
T COG0728 83 -------------------EEAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYL 143 (518)
T ss_pred -------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHH
Confidence 23333445555557777777788888889999995544332 1112336888889999999
Q ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHhcCcccccc
Q 011769 257 PAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIPN 336 (478)
Q Consensus 257 ~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~v~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~l~~~~~~~~~~ 336 (478)
++..+.....+++|..++...+.+..+..++.-+.....+......-..+.++++.++-+++.++.+..++|.+-..+++
T Consensus 144 ~~isL~al~~aiLNs~~~F~~~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~ 223 (518)
T COG0728 144 LFISLSALFGAILNSRNRFFIPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPR 223 (518)
T ss_pred HHHHHHHHHHHHHhccCeechhhhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCC
Confidence 99999999999999999999999999999987664444444332223778899999999999999999999976555554
Q ss_pred c--cccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcC
Q 011769 337 M--KNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVS-MLADAQAASGQALIASSFAKG 413 (478)
Q Consensus 337 ~--~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~aa~~i~~~i~~l~~-~~~~ai~~a~~~~v~~~~g~~ 413 (478)
+ ++...|++++.-.|..+.....++...+++.+++.+++-.++.++.+.+++.+.. .+..++++...|.++++..++
T Consensus 224 ~~~~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~ 303 (518)
T COG0728 224 FGFKDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANG 303 (518)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4 4457899999999999999999999999999999999999999999999999996 888999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcc
Q 011769 414 DYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLF 451 (478)
Q Consensus 414 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~lf 451 (478)
|.++.++..+++++++..+.+|.++++.++++++.+++
T Consensus 304 ~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~L 341 (518)
T COG0728 304 DWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLL 341 (518)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999986
No 19
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.86 E-value=9.1e-21 Score=195.98 Aligned_cols=250 Identities=14% Similarity=0.110 Sum_probs=199.3
Q ss_pred ccccccccccchhHHHHHHhhhcccCceEEEeecCCCCccccccccccCCCCcccccCCCCCcCCcccccCCCCCCCCcc
Q 011769 6 FIGGRSCGITGTSFQRRAINKMGKAFPIYSMVIAPPNCSFGVINRAKNGFNPAIMCCGSVSDQHASDYITINPSGVGESE 85 (478)
Q Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (478)
||+++++|++|++++ |.+++........+++.+.++. .+. +.+.+++
T Consensus 179 lI~~~~lGv~Gaa~A-t~is~~~~~i~~~~~~~~~~~~-~~~---~~~~~~~---------------------------- 225 (441)
T PRK10367 179 LVMGLHMNVQGAALA-TVIAEYATLLIGLLMVRKVLKL-RGI---SLEMLKT---------------------------- 225 (441)
T ss_pred HHHHcCCccHHHHHH-HHHHHHHHHHHHHHHHHHHHhh-ccc---cHHHhhh----------------------------
Confidence 677889999999999 9999988776655555542210 000 0000111
Q ss_pred cchhhhcccccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccCcchhhhhhhhHHHHHHHHHHhhhhhhHHHHHH
Q 011769 86 SRKSAATSQSCVQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSF 165 (478)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~~~v~~~~ig~lG~~~laa~~~~~~l~~~~~~i~~~gl~~~~~~~ 165 (478)
+ .++..|++++++.|..+.+..+.....+-+.+++++|++++|+++++.++.++.+.+. .|++++.+++
T Consensus 226 ----~------~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~~~~~-~gl~~a~~~l 294 (441)
T PRK10367 226 ----A------WRGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTAYAL-DGFAYAVEAH 294 (441)
T ss_pred ----h------hHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHH
Confidence 0 1235899999999999999999999999999999999999999999999999999998 6799999999
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCCCCCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCccchHHH
Q 011769 166 VAEDISRSSSKDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPA 245 (478)
Q Consensus 166 vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a 245 (478)
++|++|+|| .+++++..+.++.++.+++.+.+++++.+++++..+|.+|+| +.+.+
T Consensus 295 vg~~~Ga~~----------------------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~--v~~~~ 350 (441)
T PRK10367 295 SGQAYGARD----------------------GSQLLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQ--IQQLA 350 (441)
T ss_pred HHHHHcCCC----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHH
Confidence 999999998 888889999999999999999999999999999999987666 99999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhCC---CCchHHHHHHHHHHHHHHhHHHHHhccCCchhHHHHHHHHHHHHHHHHH
Q 011769 246 QRFLSLRAIGAPAVVLSLAIQGIFRGFK---DTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLM 322 (478)
Q Consensus 246 ~~~l~i~~~~~~~~~~~~~~~~~l~g~g---~~~~~~~~~~~~~~v~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~ 322 (478)
..++++.++..+......+..++++|.+ |++.++++++++..+- .+.. +++|+.|+|++..+++.+..+++
T Consensus 351 ~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~----~~~~--~~~g~~Gvw~a~~~~~~~~~i~~ 424 (441)
T PRK10367 351 DRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALT----LLTL--PWLGNHGLWLALTVFLALRGLSL 424 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHH----HHHH--HHcCchHHHHHHHHHHHHHHHHH
Confidence 9999998876443324444444444444 5999999999886531 1111 25799999999999999999998
Q ss_pred HHHHHhc
Q 011769 323 IWYLNKR 329 (478)
Q Consensus 323 ~~~l~~~ 329 (478)
.++++++
T Consensus 425 ~~~~~~~ 431 (441)
T PRK10367 425 AAIWRRH 431 (441)
T ss_pred HHHHHHH
Confidence 8877665
No 20
>PRK10459 colanic acid exporter; Provisional
Probab=99.85 E-value=8.3e-18 Score=176.89 Aligned_cols=313 Identities=12% Similarity=0.068 Sum_probs=252.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-cCcchhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCCCCC
Q 011769 101 QLDLIMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDST 179 (478)
Q Consensus 101 ~~~i~~~~~P~~~~~~~~~~~~~v~~~~ig~-lG~~~laa~~~~~~l~~~~~~i~~~gl~~~~~~~vs~~~g~~~~~~~~ 179 (478)
.++..+-+....+.++...+.+++...++.| +|++++|.++.+..+.++...+...|++.+.. | +++++
T Consensus 4 ~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~----~~~~~-- 73 (492)
T PRK10459 4 REKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----Q----RQDIS-- 73 (492)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----h----cccCC--
Confidence 4567788888999999999999999999999 99999999999999999999998888777552 1 11110
Q ss_pred CCCCCCCCCCCCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCccchHHHHHHHHHHHhhHHHH
Q 011769 180 SDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAV 259 (478)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~ 259 (478)
. +...+.+++..+.+++..++++.+++++..+++.+ + ....+++..+..++.
T Consensus 74 -----------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~------~~~~~~~~~~~~~~~ 125 (492)
T PRK10459 74 -----------------H----LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYHNP-E------LAPLIKTLSLAFVII 125 (492)
T ss_pred -----------------H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh-h------hHHHHHHHHHHHHHH
Confidence 1 23456677777888888888888888887776533 3 345677778888888
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHhcCccccccccc
Q 011769 260 VLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIPNMKN 339 (478)
Q Consensus 260 ~~~~~~~~~l~g~g~~~~~~~~~~~~~~v~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~l~~~~~~~~~~~~~ 339 (478)
.+.....+.+|+.++.+......++..++..++...+.+ .++|+.+..++..+++.+..++.....+++ ...+++++.
T Consensus 126 ~~~~~~~~~l~r~~~f~~~a~~~~~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~ 203 (492)
T PRK10459 126 PIGQQFRALLQKELEFNKLAKIEISAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRKI-YRPALHFSL 203 (492)
T ss_pred HHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhccc-CCccceecH
Confidence 888899999999999999999888888877766655544 379999999999999988776554433332 222233444
Q ss_pred cchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-ChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCChHH
Q 011769 340 LHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQ-GALAMAAHQICLQVWLSVS-MLADAQAASGQALIASSFAKGDYNT 417 (478)
Q Consensus 340 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~-g~~~~aa~~i~~~i~~l~~-~~~~ai~~a~~~~v~~~~g~~~~~~ 417 (478)
..+|++++++.|.....+..++...+++.+++++ |+++++.|+.++++..+.. .+...+++...|.+++. ++|.++
T Consensus 204 ~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~ 281 (492)
T PRK10459 204 ASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEK 281 (492)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHH
Confidence 5579999999999999999999999999998877 9999999999999988754 45566788999999885 678899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcH
Q 011769 418 VKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDT 455 (478)
Q Consensus 418 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~lf~~d~ 455 (478)
.++..++..++...+++|+.+++.++++++..++.+++
T Consensus 282 ~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~ 319 (492)
T PRK10459 282 LRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK 319 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh
Confidence 99999999999999999999999999999988876654
No 21
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.84 E-value=1.6e-18 Score=182.61 Aligned_cols=232 Identities=17% Similarity=0.166 Sum_probs=196.5
Q ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccCcchhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCCCC
Q 011769 99 NVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDS 178 (478)
Q Consensus 99 ~~~~~i~~~~~P~~~~~~~~~~~~~v~~~~ig~lG~~~laa~~~~~~l~~~~~~i~~~gl~~~~~~~vs~~~g~~~~~~~ 178 (478)
+..|++++.++|..+++..+.+...+|+.+.+++|++++++++.+.++.++...+...+++.+..|.++|++|++|
T Consensus 220 ~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~---- 295 (502)
T TIGR01695 220 PGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGN---- 295 (502)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----
Confidence 3478999999999999999999999999886669999999999999999988765546799999999999999888
Q ss_pred CCCCCCCCCCCCCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCC--CccchHHHHHHHHHHHhhH
Q 011769 179 TSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISS--ASSMRIPAQRFLSLRAIGA 256 (478)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~v~~~a~~~l~i~~~~~ 256 (478)
.++.++.+++.+.+...++++.++.++.+++++..++.+++ +++..+.+..++++.+++.
T Consensus 296 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~ 357 (502)
T TIGR01695 296 ------------------WNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGL 357 (502)
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHH
Confidence 77788899999999999999999999999999999886543 3346888999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHhcCcccccc
Q 011769 257 PAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIPN 336 (478)
Q Consensus 257 ~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~v~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~l~~~~~~~~~~ 336 (478)
++..++.+..+.+++.||+|.+++..+...++|++++++++. .+|+.|+++++.+++.+..++..++++|+.+..++
T Consensus 358 ~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~- 434 (502)
T TIGR01695 358 IFYSLQKVLLRAFYARKDTRTPFINSVISVVLNALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNRRLKGILP- 434 (502)
T ss_pred HHHHHHHHHHHhhHhccCCccCHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcCCc-
Confidence 999999999999999999999999999999999999988875 58999999999999999999988888776432111
Q ss_pred ccccchHHHHHhhHHHHHHHH
Q 011769 337 MKNLHFGDYLRSGGYLLGRTL 357 (478)
Q Consensus 337 ~~~~~~~~~l~~~~p~~~~~~ 357 (478)
....+++.|......++..
T Consensus 435 --~~~~~~~~~~~~as~~m~~ 453 (502)
T TIGR01695 435 --FGVLKVLAKLVIASAIIGG 453 (502)
T ss_pred --hHHHHHHHHHHHHHHHHHH
Confidence 1123455555444444433
No 22
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.80 E-value=3e-16 Score=164.57 Aligned_cols=317 Identities=19% Similarity=0.192 Sum_probs=241.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-cCcchhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCCCCC
Q 011769 101 QLDLIMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDST 179 (478)
Q Consensus 101 ~~~i~~~~~P~~~~~~~~~~~~~v~~~~ig~-lG~~~laa~~~~~~l~~~~~~i~~~gl~~~~~~~vs~~~g~~~~~~~~ 179 (478)
.+++.|-+.-...+++...+.+++....+.| +|+++.|.++.+..+..++..+...|+..+.+..++++...++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~----- 79 (480)
T COG2244 5 KKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGE----- 79 (480)
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccH-----
Confidence 5668888999999999999999999999999 9999999999999999999999999999999999998843322
Q ss_pred CCCCCCCCCCCCCCcccchhhHhH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCccchHHHHHHHHHHHhhHHH
Q 011769 180 SDSSCPNVSYNGCDESTDRKLLPS-VSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPA 258 (478)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~ 258 (478)
....... ....+......+++.........+. +++ ....+++..+..+.
T Consensus 80 -----------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~------~~~~~~~~~~~~~~ 129 (480)
T COG2244 80 -----------------YLLLILLSVLLLLLLALILLLLLLLIAYLLAPI-------DPV------LALLLRILSLALLL 129 (480)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------Chh------hHHHHHHHHHHHHH
Confidence 1111111 2222222222222222221111111 122 44567788999999
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHH-hcCccccccc
Q 011769 259 VVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLN-KRTILSIPNM 337 (478)
Q Consensus 259 ~~~~~~~~~~l~g~g~~~~~~~~~~~~~~v~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~l~-~~~~~~~~~~ 337 (478)
........+.+|+.++.+......+.. ..-+.....+. +.......++...+..........+.. ++++..++.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (480)
T COG2244 130 LPLSSVLRGLFQGFGRFGPLALSIVSS-IFLLAAVFALL---FAALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPIL 205 (480)
T ss_pred HHHHHHHHHHHHHHhhcccchhHHHHH-HHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc
Confidence 999999999999999999999994444 11111112222 133445555556666665555555553 2332333333
Q ss_pred c--ccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 011769 338 K--NLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQ-GALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKGD 414 (478)
Q Consensus 338 ~--~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~-g~~~~aa~~i~~~i~~l~~~~~~ai~~a~~~~v~~~~g~~~ 414 (478)
+ ...+|++++++.|.........+...+|+.+++.+ |+++++.|+.+.++......+..+++.+..|.+++...++|
T Consensus 206 ~~~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~ 285 (480)
T COG2244 206 RFSLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGD 285 (480)
T ss_pred CchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 3 45679999999999999999999999999999987 99999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHH
Q 011769 415 YNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQ 456 (478)
Q Consensus 415 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~ 456 (478)
.++.++..++..++...++.+..+++.++++++..++.+++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~ 327 (480)
T COG2244 286 RKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY 327 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc
Confidence 999999999999999999999999999999999998876554
No 23
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.76 E-value=1.3e-16 Score=167.51 Aligned_cols=204 Identities=16% Similarity=0.244 Sum_probs=174.2
Q ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-cCcch------hhhh----hhhHHHHHHHHHHhhhhhhHHHHHHH
Q 011769 98 QNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLE------LASA----GVSTSIFNILSKVFNIPLLSVATSFV 166 (478)
Q Consensus 98 ~~~~~~i~~~~~P~~~~~~~~~~~~~v~~~~ig~-lG~~~------laa~----~~~~~l~~~~~~i~~~gl~~~~~~~v 166 (478)
++..|++++.++|..++++...+...+|+.++++ +++.+ .+.+ +++.++.++...+. .+++.+..|.+
T Consensus 221 ~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~-~~l~~~~~p~~ 299 (488)
T TIGR02900 221 KALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVIT-SSLSTALVPDI 299 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHH-HHHHHHHHHHH
Confidence 3468999999999999999999999999999998 53222 1222 34455666665444 56899999999
Q ss_pred HHHhhcCCCCCCCCCCCCCCCCCCCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCccchHHHH
Q 011769 167 AEDISRSSSKDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQ 246 (478)
Q Consensus 167 s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~ 246 (478)
+|++|++| .++.++..++.+.+...++++.++.+..+++++..++.++++ +.
T Consensus 300 s~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~------~~ 351 (488)
T TIGR02900 300 SEAMAKKN----------------------YSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD------AG 351 (488)
T ss_pred HHHHHcCC----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc------hH
Confidence 99998877 677778899999999999999999999999999998875443 57
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHH
Q 011769 247 RFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYL 326 (478)
Q Consensus 247 ~~l~i~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~v~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~l 326 (478)
.++++.++..++..++....+++++.||+|.+++.++++.++|++++++++..+++|+.|+++++++++.+..++..+..
T Consensus 352 ~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~ 431 (488)
T TIGR02900 352 NFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEI 431 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999888755679999999999999999999998888
Q ss_pred HhcC
Q 011769 327 NKRT 330 (478)
Q Consensus 327 ~~~~ 330 (478)
+|..
T Consensus 432 ~~~~ 435 (488)
T TIGR02900 432 KKNI 435 (488)
T ss_pred HHHh
Confidence 7653
No 24
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.75 E-value=4.2e-18 Score=151.55 Aligned_cols=161 Identities=24% Similarity=0.421 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCcchhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCC
Q 011769 110 PAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDSTSDSSCPNVSY 189 (478)
Q Consensus 110 P~~~~~~~~~~~~~v~~~~ig~lG~~~laa~~~~~~l~~~~~~i~~~gl~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~ 189 (478)
|.+++++++.+.+.+|+.+++++|++++++++++.++.++...+. .|++.+.+++++|++|++|
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~~~-~g~~~a~~~~~s~~~G~~~--------------- 64 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFMLI-FGLATALQILISQNIGAGD--------------- 64 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCSSS---------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhhc-ccccccccceeeccccccc---------------
Confidence 899999999999999999999999999999999999999999988 6799999999999999988
Q ss_pred CCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 011769 190 NGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIF 269 (478)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l 269 (478)
++++++..+..+.+..+++++..++...+.+++..+++.|++ +.+.+.+|+++..+..|+..+....++++
T Consensus 65 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 135 (162)
T PF01554_consen 65 -------YKRAKKVVRQGLLLSLIIGLLLSLVLLLFSEFILSLFGNDPE--VIEIARQYLRIMAFSIPFFALFFVFSGIL 135 (162)
T ss_dssp -------TTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHCTSSSTTC--CHHHHHHHHCCHHHHHHHHHHHHHHCCCC
T ss_pred -------ccccccccccccccchhcccchhhhhhhHHHHHHHHhhhhHH--HHHHhhccchhhhhHHHHHHHHHHHHHHH
Confidence 566668899999999999999999999999999999998888 99999999999999999999999999999
Q ss_pred HhCCCCchHHHHHHHHH-HHHHHhHHH
Q 011769 270 RGFKDTRTPVFCLGLGN-FSAVFMFPM 295 (478)
Q Consensus 270 ~g~g~~~~~~~~~~~~~-~v~i~l~~~ 295 (478)
||.||++.+++.++++. +++++++|+
T Consensus 136 ~~~g~~~~~~~~~~~~~~~~~i~l~yl 162 (162)
T PF01554_consen 136 QGIGRTKIAMYISIISFWIINIPLAYL 162 (162)
T ss_dssp GCCSTHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHCCcHHHHHHHHHHHHHHHHHhHHhC
Confidence 99999999999999999 999998874
No 25
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.73 E-value=1.4e-14 Score=139.51 Aligned_cols=269 Identities=17% Similarity=0.211 Sum_probs=205.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhc-cCcchhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCCCCCCCCC
Q 011769 105 IMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDSTSDSS 183 (478)
Q Consensus 105 ~~~~~P~~~~~~~~~~~~~v~~~~ig~-lG~~~laa~~~~~~l~~~~~~i~~~gl~~~~~~~vs~~~g~~~~~~~~~~~~ 183 (478)
+|-+.-....++...+.+++...++.| +|++++|.++....+.+++..+...|+..+....+++...+
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~----------- 70 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK----------- 70 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-----------
Confidence 456677788999999999999999999 99999999999999999999998899999999999887322
Q ss_pred CCCCCCCCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCccchHHHHHHHHHHHhhHHHHHHHH
Q 011769 184 CPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSL 263 (478)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~ 263 (478)
.++.+.+.........+.+++..+ ...+...++.++. ...+........++.....
T Consensus 71 -------------~~~~~~~~~~~~~~~~~~~~i~~~-----~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 126 (273)
T PF01943_consen 71 -------------KELRSAYFSSVLFLLLIFSLIFLL-----ILLIASFFGNPSL------SLILIILALLILILSSLSS 126 (273)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHcCCchH------HHHHHHHHHHHHHHHHHHH
Confidence 111123333333333333332222 2222234443332 1222222222225788889
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHhHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccchH
Q 011769 264 AIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIPNMKNLHFG 343 (478)
Q Consensus 264 ~~~~~l~g~g~~~~~~~~~~~~~~v~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 343 (478)
....++++.++.+.....++...++.+++..++... +.++.+..++..++..+..++..+..+|+.+..+...+....|
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (273)
T PF01943_consen 127 VFSGLLQGLQRFKYIAISNIISSLLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLRPRFSFFSKKFFK 205 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchHHHH
Confidence 999999999999999999999998887766566554 4558999999999999998888888887654223333345579
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011769 344 DYLRSGGYLLGRTLAAVMTITLSTSIAARQ-GALAMAAHQICLQVWLSVSMLADAQAASGQALIASS 409 (478)
Q Consensus 344 ~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~-g~~~~aa~~i~~~i~~l~~~~~~ai~~a~~~~v~~~ 409 (478)
++++.+.|..+..+...+...++..+++.+ |+++++.|+++.++......+..++.++..|.+++.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 206 EILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999988 999999999999999999999999999999999885
No 26
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.72 E-value=6e-15 Score=152.94 Aligned_cols=210 Identities=18% Similarity=0.226 Sum_probs=191.7
Q ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccCcchhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCCC
Q 011769 98 QNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKD 177 (478)
Q Consensus 98 ~~~~~~i~~~~~P~~~~~~~~~~~~~v~~~~ig~lG~~~laa~~~~~~l~~~~~~i~~~gl~~~~~~~vs~~~g~~~~~~ 177 (478)
++..|++++...|..+.....++..++|+.+.+++++.++++++.+.++.++...+...+++++.-|..++...++|
T Consensus 194 ~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d--- 270 (451)
T PF03023_consen 194 DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGD--- 270 (451)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---
Confidence 34588999999999999999999999999999999999999999999999999988878899999999999977776
Q ss_pred CCCCCCCCCCCCCCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcC--CCCCccchHHHHHHHHHHHhh
Q 011769 178 STSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMG--ISSASSMRIPAQRFLSLRAIG 255 (478)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~v~~~a~~~l~i~~~~ 255 (478)
.++.++..++.+...+.+.++.++.+..+++++.+.+. +.-+.+-.+....++++.+++
T Consensus 271 -------------------~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~ 331 (451)
T PF03023_consen 271 -------------------WEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALG 331 (451)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHH
Confidence 77788899999999999999999999999999998764 233333588889999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 011769 256 APAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTI 331 (478)
Q Consensus 256 ~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~v~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~l~~~~~ 331 (478)
+|+..+...+...+.+++|+|.|++.++++.++|++++.++.. .+|..|.++++.++.++.++++++.++|+.+
T Consensus 332 l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~~lni~l~~~l~~--~~g~~Glala~sl~~~i~~~~l~~~l~r~~~ 405 (451)
T PF03023_consen 332 LPFYALNDLLSRVFYALGDTKTPVRISVISVVLNIILSILLVP--FFGVAGLALATSLSAIISALLLYILLRRRLG 405 (451)
T ss_pred hHHHHHHHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999977765 6999999999999999999999999988765
No 27
>PRK15099 O-antigen translocase; Provisional
Probab=99.69 E-value=1.1e-15 Score=157.43 Aligned_cols=241 Identities=12% Similarity=0.002 Sum_probs=191.2
Q ss_pred cccchhHHHHHHhhhcccCceEEEeecCCCCccccccccccCCCCcccccCCCCCcCCcccccCCCCCCCCcccchhhhc
Q 011769 13 GITGTSFQRRAINKMGKAFPIYSMVIAPPNCSFGVINRAKNGFNPAIMCCGSVSDQHASDYITINPSGVGESESRKSAAT 92 (478)
Q Consensus 13 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (478)
|+.|++++ +.+++..+......++.+.++ . +.+ +...++
T Consensus 171 Gv~Ga~ia-t~i~~~i~~~~~~~~~~~~~~--~--~~~-~~~~~~----------------------------------- 209 (416)
T PRK15099 171 GYEGALLG-LALVPALVVLPAGIMLIRRGT--I--PLS-YLKPSW----------------------------------- 209 (416)
T ss_pred cchHHHHH-HHHHHHHHHHHHHHHHHHccc--e--ehH-hhhccC-----------------------------------
Confidence 99999999 999998877665444443222 1 100 001111
Q ss_pred ccccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-cCcchhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 011769 93 SQSCVQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDIS 171 (478)
Q Consensus 93 ~~~~~~~~~~~i~~~~~P~~~~~~~~~~~~~v~~~~ig~-lG~~~laa~~~~~~l~~~~~~i~~~gl~~~~~~~vs~~~g 171 (478)
+++..|+++++++|..++++..++...+|+.++++ +|++++|.|+.+.++.+........+++++..|.++++
T Consensus 210 ----~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~-- 283 (416)
T PRK15099 210 ----DNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL-- 283 (416)
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 34558999999999999999999999999999985 99999999999999988664444467999999999995
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCccchHHHHHHHHH
Q 011769 172 RSSSKDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSL 251 (478)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i 251 (478)
+| .++.++..++.......++++.++++++++++++.++.+++ .+.+..++++
T Consensus 284 -~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~----~~~~~~~~~~ 336 (416)
T PRK15099 284 -TE----------------------KRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK----FTAMRDLFAW 336 (416)
T ss_pred -CC----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH----HHHHHHHHHH
Confidence 22 34455678888888888898888888899999999887654 3447788999
Q ss_pred HHhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 011769 252 RAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKR 329 (478)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~v~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~l~~~ 329 (478)
.+++.++...+......+-..++++......+...+++++++++++. .+|..|+++++.+++.+..++......++
T Consensus 337 l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~i~l~~~li~--~~G~~G~a~a~~is~~~~~~~~~~~~~~~ 412 (416)
T PRK15099 337 QLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQFTLLTGFAHWLIP--LHGALGAAQAYMATYIVYFSLCCGVFLLY 412 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888877777777778888888888888888899999988875 58999999999999999998777665443
No 28
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.68 E-value=1.4e-13 Score=141.45 Aligned_cols=237 Identities=16% Similarity=0.167 Sum_probs=198.4
Q ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccCcchhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCCC
Q 011769 98 QNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKD 177 (478)
Q Consensus 98 ~~~~~~i~~~~~P~~~~~~~~~~~~~v~~~~ig~lG~~~laa~~~~~~l~~~~~~i~~~gl~~~~~~~vs~~~g~~~~~~ 177 (478)
++..|++.+...|+.++....++..++|+.+.+.+.+-..+.++.+..+.++...++...+++..-|..|+....+|
T Consensus 228 ~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~--- 304 (518)
T COG0728 228 DPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGD--- 304 (518)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCC---
Confidence 35689999999999999999999999999999999999999999999999999999988899999999999976666
Q ss_pred CCCCCCCCCCCCCCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCC--CccchHHHHHHHHHHHhh
Q 011769 178 STSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISS--ASSMRIPAQRFLSLRAIG 255 (478)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~v~~~a~~~l~i~~~~ 255 (478)
.++.++..++++.+.++++++.++.+..+++|+.+.+.... +++-.....+.++.++++
T Consensus 305 -------------------~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~g 365 (518)
T COG0728 305 -------------------WPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLG 365 (518)
T ss_pred -------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHh
Confidence 56667889999999999999999999999999999764321 122467788899999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Q 011769 256 APAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIP 335 (478)
Q Consensus 256 ~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~v~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~l~~~~~~~~~ 335 (478)
.++..+..++...+.+++|+|+|+++.+++.++|+.+++.+.. .+|..|.++++.++.++.+.++++.++|+....+
T Consensus 366 L~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~~~n~~l~~~l~~--~~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~- 442 (518)
T COG0728 366 LIPFALVKLLSRVFYAREDTKTPMKIAIISLVVNILLNLLLIP--PLGHVGLALATSLAAWVNALLLYYLLRKRLVYLP- 442 (518)
T ss_pred hHHHHHHHHHHHHHHHccCCCcChHHHHHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-
Confidence 9999999999999999999999999999999999999966665 5788889999999999999999999888765333
Q ss_pred cccccchHHHHHhhHHHHHHHHHHH
Q 011769 336 NMKNLHFGDYLRSGGYLLGRTLAAV 360 (478)
Q Consensus 336 ~~~~~~~~~~l~~~~p~~~~~~~~~ 360 (478)
...+.... ..|..+-..++....+
T Consensus 443 ~~~~~~~~-~~k~~l~~~i~~~~~~ 466 (518)
T COG0728 443 GRGWGLFL-ILKLLLASAIMAAALL 466 (518)
T ss_pred cchhhHHH-HHHHHHHHHHHHHHHH
Confidence 22222122 4444444444444333
No 29
>PRK10459 colanic acid exporter; Provisional
Probab=99.62 E-value=1.6e-12 Score=136.76 Aligned_cols=201 Identities=16% Similarity=0.079 Sum_probs=170.7
Q ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-cCcchhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCCC
Q 011769 99 NVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKD 177 (478)
Q Consensus 99 ~~~~~i~~~~~P~~~~~~~~~~~~~v~~~~ig~-lG~~~laa~~~~~~l~~~~~~i~~~gl~~~~~~~vs~~~g~~~~~~ 177 (478)
+..|++++++.|...+++...+...+|+.++|+ +|++++|.|+.+.++.++........++....|..++. ++|
T Consensus 204 ~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~--- 278 (492)
T PRK10459 204 ASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDD--- 278 (492)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCC---
Confidence 457899999999999999999999999999999 89999999999999998876655444667778888775 222
Q ss_pred CCCCCCCCCCCCCCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCccchHHHHHHHHHHHhhHH
Q 011769 178 STSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAP 257 (478)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~ 257 (478)
.++.++.+.+.+.+...+++++.+.+.+.+++++..+.+++ ...+...+++.++...
T Consensus 279 -------------------~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~----~~~a~~~l~il~~~~~ 335 (492)
T PRK10459 279 -------------------TEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK----WNSAIPILQLLCIVGL 335 (492)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh----HHhHHHHHHHHHHHHH
Confidence 45566788889999999999999999999999988775443 5667899999999999
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 011769 258 AVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKR 329 (478)
Q Consensus 258 ~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~v~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~l~~~ 329 (478)
+..+.......+++.||+|.+++.+++..+++++..+++.. .+|+.|+++++++++.+...+..++.+|+
T Consensus 336 ~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~~~~~~~~~ 405 (492)
T PRK10459 336 LRSVGNPIGSLLLAKGRADLSFKWNVFKTFLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTILSYFLMIKP 405 (492)
T ss_pred HHHHHHHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888876655553 58999999999999999988888877554
No 30
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.54 E-value=1.8e-11 Score=116.64 Aligned_cols=246 Identities=15% Similarity=0.162 Sum_probs=179.2
Q ss_pred HHHHHHHHHhhc-cCcchhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcccch
Q 011769 120 MAQLMETAYIGR-LGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDSTSDSSCPNVSYNGCDESTDR 198 (478)
Q Consensus 120 ~~~~v~~~~ig~-lG~~~laa~~~~~~l~~~~~~i~~~gl~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (478)
..+++...+++| +|++++|.++....+..+...+...|+...... . .+++ .+
T Consensus 2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~----~-~~~~----------------------~~ 54 (251)
T PF13440_consen 2 GINFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR----S-AARD----------------------KQ 54 (251)
T ss_pred hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----h-hccC----------------------HH
Confidence 356777888999 999999999999999999998876666555544 1 1111 22
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCchH
Q 011769 199 KLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTP 278 (478)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~g~g~~~~~ 278 (478)
+.++..........+.+ ++...+...+..+++ +++ ...++.+..+..++.......++.+++.+|.+..
T Consensus 55 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (251)
T PF13440_consen 55 DIRSLLRFSLLVSLLLA----VILAILAILIAYFFG-DPE------LFWLLLLLALAIFFSALSQLFRSILRARGRFRAY 123 (251)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhC-Chh------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 23333444333333333 333333333334443 232 3345667778888999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccchHHHHHhhHHHHHHHHH
Q 011769 279 VFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIPNMKNLHFGDYLRSGGYLLGRTLA 358 (478)
Q Consensus 279 ~~~~~~~~~v~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~ 358 (478)
....+...++.+.+...+.+ .+.+..+..++..++..+..++.+...+++.+ .++ +.+.++.++.+.|..+..+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~ 198 (251)
T PF13440_consen 124 ALIDIVRSLLRLLLLVLLLY-LGLNLWSILLAFIISALLALLISFYLLRRKLR-LSF---KFSWRRLLKYGLPFSLSSLL 198 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHhccccC-CCc---hhhHHHHHHHHHHHHHHHHH
Confidence 99999999887544444443 34588899999999988887776664433222 222 22334589999999999999
Q ss_pred HHHHHHHHHHHHHh-cChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 011769 359 AVMTITLSTSIAAR-QGALAMAAHQICLQVWLSVS-MLADAQAASGQALIAS 408 (478)
Q Consensus 359 ~~~~~~~~~~~~~~-~g~~~~aa~~i~~~i~~l~~-~~~~ai~~a~~~~v~~ 408 (478)
.+....++..+++. +|+++++.|+++.++..... ++..++++...|.++|
T Consensus 199 ~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 199 SWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999 79999999999999999888 9999999999999886
No 31
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.49 E-value=1.1e-11 Score=129.93 Aligned_cols=187 Identities=18% Similarity=0.242 Sum_probs=167.3
Q ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-cCcchhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCC
Q 011769 98 QNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSK 176 (478)
Q Consensus 98 ~~~~~~i~~~~~P~~~~~~~~~~~~~v~~~~ig~-lG~~~laa~~~~~~l~~~~~~i~~~gl~~~~~~~vs~~~g~~~~~ 176 (478)
.+..|++++.++|..+......+.+.+|+.++|+ +|++++|.|+.+..+......+.. .++.+.-|..++.+.+++
T Consensus 209 ~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~~~-~l~~~l~P~~s~~~~~~~-- 285 (480)
T COG2244 209 LALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVAS-ALNRVLFPALSRAYAEGD-- 285 (480)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHHHH-HHHHHHHHHHHHHHHcCc--
Confidence 5679999999999999999999999999999999 999999999988888888888884 499999999999987766
Q ss_pred CCCCCCCCCCCCCCCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCccchHHHHHHHHHHHhhH
Q 011769 177 DSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGA 256 (478)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~ 256 (478)
.++.++..++.+.....++++..+.+..+++++...+.+++. . .+...+++.++..
T Consensus 286 --------------------~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~---~-~~~~~l~il~~~~ 341 (480)
T COG2244 286 --------------------RKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY---A-SAAPILQLLALAG 341 (480)
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc---c-chhHHHHHHHHHH
Confidence 666668899999999999999999999999999887665543 2 2788899999999
Q ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhHHHHHhccCCchhHHHHHHHHH
Q 011769 257 PAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGS 314 (478)
Q Consensus 257 ~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~v~i~l~~~li~~~~~Gi~Gaa~a~~i~ 314 (478)
++..+.......+++.|+++..++...++.++|++++++++. .+|..|++.++ .+
T Consensus 342 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~~~l~~~li~--~~g~~g~~~a~-~~ 396 (480)
T COG2244 342 LFLSLVSLTSSLLQALGKQRLLLLISLISALLNLILNLLLIP--RFGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHhHHHH--hhhhhhHHHHH-HH
Confidence 999999999999999999999999999999999999988876 68999999998 44
No 32
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.30 E-value=1.7e-11 Score=122.67 Aligned_cols=130 Identities=16% Similarity=0.218 Sum_probs=118.1
Q ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccCcchhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCCC
Q 011769 98 QNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKD 177 (478)
Q Consensus 98 ~~~~~~i~~~~~P~~~~~~~~~~~~~v~~~~ig~lG~~~laa~~~~~~l~~~~~~i~~~gl~~~~~~~vs~~~g~~~~~~ 177 (478)
++..|+++++++|.++.++...+...+|+.+++++|++++++|+++.++.++...+. .+++.+..+.++++++++|
T Consensus 212 ~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~--- 287 (342)
T TIGR00797 212 WEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLLFMPA-FGFGIAVSILVGQALGAGD--- 287 (342)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCC---
Confidence 345899999999999999999999999999999999999999999999999887777 5699999999999998877
Q ss_pred CCCCCCCCCCCCCCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCccchHHHHHHHHHH
Q 011769 178 STSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLR 252 (478)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~ 252 (478)
.++.++..++++.+..+++++.+++++++++++.+++.+|++ +.+.+..++++.
T Consensus 288 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~--~~~~~~~~~~~~ 341 (342)
T TIGR00797 288 -------------------PKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPE--VLELAAIYLIFV 341 (342)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHh
Confidence 777889999999999999999999999999999999987776 888888888764
No 33
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.27 E-value=2.8e-12 Score=113.96 Aligned_cols=125 Identities=25% Similarity=0.330 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Q 011769 351 YLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKGDYNTVKEITHFALKTGL 430 (478)
Q Consensus 351 p~~~~~~~~~~~~~~~~~~~~~~g~~~~aa~~i~~~i~~l~~~~~~ai~~a~~~~v~~~~g~~~~~~~~~~~~~~l~~~~ 430 (478)
|..++.+.+...+.+++.+++++|++++++++++.++..+...+..+++++.++.+++++|++|++++++..++++.++.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLSL 80 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhhcccccccccceeecccccccccccccccccccccch
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHHHHHHHHHHHHHh
Q 011769 431 FTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLVRVYLLLVC 475 (478)
Q Consensus 431 ~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~~~~~~~~~~~~ 475 (478)
++++++++++.++.+++.++|++|+++.+...+++++..+..++.
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 125 (162)
T PF01554_consen 81 IIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFF 125 (162)
T ss_dssp HHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHH
T ss_pred hcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHH
Confidence 999999999999999999999999999999998888877666654
No 34
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.15 E-value=2e-11 Score=126.34 Aligned_cols=205 Identities=16% Similarity=0.116 Sum_probs=183.3
Q ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccCc--chhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCC
Q 011769 99 NVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGP--LELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSK 176 (478)
Q Consensus 99 ~~~~~i~~~~~P~~~~~~~~~~~~~v~~~~ig~lG~--~~laa~~~~~~l~~~~~~i~~~gl~~~~~~~vs~~~g~~~~~ 176 (478)
+.+++++++++|..+...++.-...+-....|.++. .++++.++...+....+++. .|++.++++.++..+|+|+
T Consensus 244 ~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~-~~~~~a~strv~neLGag~-- 320 (473)
T KOG1347|consen 244 DSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIP-GAFSAAVSTRVSNELGAGK-- 320 (473)
T ss_pred hhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHh-hhhhhhHHHHHHHHHcCCC--
Confidence 347889999999999999999999999999999884 78899999999999999999 5799999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCccchHHHHHHHHHHHhhH
Q 011769 177 DSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGA 256 (478)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~ 256 (478)
.+.++.....++..+...+...+..+....+.+...|..+++ +.+...+...+.++..
T Consensus 321 --------------------p~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~e--v~~~va~~~pll~~~~ 378 (473)
T KOG1347|consen 321 --------------------PKRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKE--VLDLVADLTPLLALSI 378 (473)
T ss_pred --------------------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHHHHH
Confidence 566667778888888999999999999999999999997777 9999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHH-HHHHHhHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 011769 257 PAVVLSLAIQGIFRGFKDTRTPVFCLGLGN-FSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNK 328 (478)
Q Consensus 257 ~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~-~v~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~l~~ 328 (478)
+.+..+.+..+..+|.|..+...++++... ++.+++...+-+..++|..|.|++...+..+....+.....+
T Consensus 379 ~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~ 451 (473)
T KOG1347|consen 379 LLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTAR 451 (473)
T ss_pred HhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHheee
Confidence 999999999999999999999999999987 778888888887789999999999999966666666555543
No 35
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.72 E-value=2.8e-05 Score=74.33 Aligned_cols=258 Identities=14% Similarity=0.086 Sum_probs=163.4
Q ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccCc---chhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCC
Q 011769 99 NVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGP---LELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSS 175 (478)
Q Consensus 99 ~~~~~i~~~~~P~~~~~~~~~~~~~v~~~~ig~lG~---~~laa~~~~~~l~~~~~~i~~~gl~~~~~~~vs~~~g~~~~ 175 (478)
...+.+.++-+|..+++++..+...+.+..+++-.+ +.+|+|+++..+.-++...... +-.....++-+. +
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~-~~~igl~~V~s~-----r 81 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSM-FHHIGLVFVNSK-----R 81 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhh-hHHHHHHHhcch-----h
Confidence 347889999999999999999999999999987332 3499999999988877777744 555555555432 1
Q ss_pred CCCCCCCCCCCCCCCCCCcccchhhHhHHHHHHHHHHHHHHHHHHH-----HHHhHHHHH-HhcCCCCCccchHHHHHHH
Q 011769 176 KDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALA-----MYFGSGLFL-DIMGISSASSMRIPAQRFL 249 (478)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~-~~~~~~~~~~v~~~a~~~l 249 (478)
|+ + +... ...+.+++.+++ .-.+...++ ..++.+++ +.+.+...+
T Consensus 82 sr--------------------r---~~vl----~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~--va~~tr~a~ 132 (345)
T PF07260_consen 82 SR--------------------R---KAVL----CMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPS--VAEKTRRAF 132 (345)
T ss_pred hh--------------------H---HHHH----HHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHH--HHHHHHHHH
Confidence 11 1 1121 122222222222 122233333 46777777 999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhHHHHHhccCCchhHH---HHHHHHHHHH-HHHHHHHH
Q 011769 250 SLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGA---AISTVGSQYM-VTLLMIWY 325 (478)
Q Consensus 250 ~i~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~v~i~l~~~li~~~~~Gi~Ga---a~a~~i~~~~-~~~~~~~~ 325 (478)
.++.+.-+++++....+|++-=.+++......++...+..+++..+++...--....+ .++...+..+ .+++.+.+
T Consensus 133 l~L~llPfl~alr~~~qGILik~r~s~iV~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~vr~t~v~LGy 212 (345)
T PF07260_consen 133 LYLTLLPFLDALRWIHQGILIKHRHSWIVGSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIAVRFTIVCLGY 212 (345)
T ss_pred HHHHHHHHHHHHHHHHhhHhhhccceeEeehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999997777777777776666655555555553211011111 1222222222 12222222
Q ss_pred H---HhcCcccc-c-cccccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--C----hhHHHHHHHHHHHHHHH
Q 011769 326 L---NKRTILSI-P-NMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQ--G----ALAMAAHQICLQVWLSV 391 (478)
Q Consensus 326 l---~~~~~~~~-~-~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~--g----~~~~aa~~i~~~i~~l~ 391 (478)
+ +...+... . +.+...+++++++.+|++.......++--+.+.++++. | ++++|...+.+.+.-+.
T Consensus 213 ~~~i~~~~p~~~~~~~~~~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvgh~~ 289 (345)
T PF07260_consen 213 YQSIHDIIPQLSGLEKGDSATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVGHMP 289 (345)
T ss_pred HHHHhhhccccCCcccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCCcCc
Confidence 2 22222221 1 22234579999999999999999999999999999984 3 46777766665554333
No 36
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.53 E-value=8.5e-06 Score=70.83 Aligned_cols=81 Identities=25% Similarity=0.409 Sum_probs=75.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 011769 249 LSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNK 328 (478)
Q Consensus 249 l~i~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~v~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~l~~ 328 (478)
+++.+++.++..+....+..+++.||+|..++.++++.++|++++++++. ++|..|+++++.+++.+...+..+..+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~--~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIP--RFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999964 7999999999999999999999999988
Q ss_pred cCc
Q 011769 329 RTI 331 (478)
Q Consensus 329 ~~~ 331 (478)
+.+
T Consensus 80 ~~~ 82 (146)
T PF14667_consen 80 KIG 82 (146)
T ss_pred HhC
Confidence 754
No 37
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.41 E-value=4e-05 Score=80.90 Aligned_cols=215 Identities=12% Similarity=0.075 Sum_probs=176.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc--c-CcchhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCCC
Q 011769 101 QLDLIMLSLPAIAGQAIEPMAQLMETAYIGR--L-GPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKD 177 (478)
Q Consensus 101 ~~~i~~~~~P~~~~~~~~~~~~~v~~~~ig~--l-G~~~laa~~~~~~l~~~~~~i~~~gl~~~~~~~vs~~~g~~~~~~ 177 (478)
.++++++......+.+.-.+.+--|+.++.. + ..++.|.|++++++-+++.-+...++=-..-.+.++....++.+
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~- 330 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSK- 330 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCch-
Confidence 4678999999999999999999999999999 4 56899999999999999988877777778888888886554322
Q ss_pred CCCCCCCCCCCCCCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCccchHHHHHHHHHHHhhHH
Q 011769 178 STSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAP 257 (478)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~ 257 (478)
+.+++++.++..+.+...+.+...+|+++..+....++.++.+++++.- ....+...+++.+..+|
T Consensus 331 ------------~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w--~~~~~~~~l~~yc~yi~ 396 (549)
T PF04506_consen 331 ------------KKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRW--SSTSAPSLLRAYCYYIP 396 (549)
T ss_pred ------------hhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcc--cCCCchHHHHHHHHHHH
Confidence 1223455677788899999999999999999888899999998875543 33445788999999999
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHH---HHHHHHHHHhHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 011769 258 AVVLSLAIQGIFRGFKDTRTPVFCL---GLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTI 331 (478)
Q Consensus 258 ~~~~~~~~~~~l~g~g~~~~~~~~~---~~~~~v~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~l~~~~~ 331 (478)
+.+++.+.-.++++..+.+---..+ ++..++.+..+++++.. ++|..|..+|..+...+..+..+++++|..+
T Consensus 397 ~la~NGi~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~~~ 472 (549)
T PF04506_consen 397 FLAINGITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRYFR 472 (549)
T ss_pred HHHHccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988876554443 44456677788888876 7999999999999999999999999977654
No 38
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.05 E-value=0.0014 Score=65.66 Aligned_cols=213 Identities=13% Similarity=0.070 Sum_probs=165.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc---cCcchhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCCC
Q 011769 101 QLDLIMLSLPAIAGQAIEPMAQLMETAYIGR---LGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKD 177 (478)
Q Consensus 101 ~~~i~~~~~P~~~~~~~~~~~~~v~~~~ig~---lG~~~laa~~~~~~l~~~~~~i~~~gl~~~~~~~vs~~~g~~~~~~ 177 (478)
-+++.+...-..-+.+.-.+.+-=|..++.. +.-.+.|.|.+.++.-++..-+...++=-..-.+.+|...+++
T Consensus 238 d~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~--- 314 (530)
T KOG2864|consen 238 DNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDN--- 314 (530)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccc---
Confidence 3556777777778888888888888888885 5556788888888888887777767777788888888864443
Q ss_pred CCCCCCCCCCCCCCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCccchHHHHHHHHHHHhhHH
Q 011769 178 STSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAP 257 (478)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~ 257 (478)
+|+.+++..+....+.+...+|++...+....+++++.+++++.- ....+...+++.+..+|
T Consensus 315 ----------------qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kw--ss~~~~~lL~~YclYI~ 376 (530)
T KOG2864|consen 315 ----------------QENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKW--SSGGGSLLLSWYCLYIP 376 (530)
T ss_pred ----------------hhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccc--cCCCchHHHHHHHHHHH
Confidence 333667778888999999999988888888888899999887654 33445688999999999
Q ss_pred HHHHHHHHHHHHHhCCCCchHH---HHHHHHHHHHHHhHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 011769 258 AVVLSLAIQGIFRGFKDTRTPV---FCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSI 334 (478)
Q Consensus 258 ~~~~~~~~~~~l~g~g~~~~~~---~~~~~~~~v~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~l~~~~~~~~ 334 (478)
+.+++.+..+++.+..+.+-.- +...+..++.++++++++-. +|..|..+|..+...+.-+..++++++..+...
T Consensus 377 ~lAiNGitEaF~~A~~t~~qi~~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~yr~~~ 454 (530)
T KOG2864|consen 377 FLAINGITEAFAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHYYRDLS 454 (530)
T ss_pred HHHhccHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 9999999999999987766543 34455667778888999875 667999999999999988888888877655444
Q ss_pred cc
Q 011769 335 PN 336 (478)
Q Consensus 335 ~~ 336 (478)
++
T Consensus 455 ld 456 (530)
T KOG2864|consen 455 LD 456 (530)
T ss_pred CC
Confidence 33
No 39
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=97.08 E-value=0.42 Score=50.88 Aligned_cols=192 Identities=9% Similarity=0.002 Sum_probs=121.4
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhHHHHHhcc-CCch-----hH-HHHHHHHHHHHHHHHHHHHHHh-cCcc
Q 011769 261 LSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYF-KLGV-----TG-AAISTVGSQYMVTLLMIWYLNK-RTIL 332 (478)
Q Consensus 261 ~~~~~~~~l~g~g~~~~~~~~~~~~~~v~i~l~~~li~~~-~~Gi-----~G-aa~a~~i~~~~~~~~~~~~l~~-~~~~ 332 (478)
+..+.+..+.-.-+.+.-..+..+.++++..+..+..... +++. .+ +.++...++....+........ ....
T Consensus 151 ~~il~Q~~l~~~~Rv~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~ 230 (549)
T PF04506_consen 151 LYILAQQMLFFKLRVKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFP 230 (549)
T ss_pred HHHHHHHHhhhheeeEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCc
Confidence 3445566666666777777777777777766544442211 1111 11 2345555665555443322211 1111
Q ss_pred ------ccccccc------cchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--c-ChhHHHHHHHHHHHHHHHH-HHHH
Q 011769 333 ------SIPNMKN------LHFGDYLRSGGYLLGRTLAAVMTITLSTSIAAR--Q-GALAMAAHQICLQVWLSVS-MLAD 396 (478)
Q Consensus 333 ------~~~~~~~------~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~--~-g~~~~aa~~i~~~i~~l~~-~~~~ 396 (478)
..++... ..-++.++.........+...+..+.+..++.. + ..++-+.|.+++|..+++. ++..
T Consensus 231 ~~~~s~~lp~i~~~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~ 310 (549)
T PF04506_consen 231 FKSFSDLLPKISSGNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQ 310 (549)
T ss_pred ccchhhccccccccccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhC
Confidence 0111111 113778999999999999999999999998888 4 7899999999999988874 3346
Q ss_pred HHHHHHHHHHHHHhhcCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccC
Q 011769 397 AQAASGQALIASSFAKGDY---------NTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFT 452 (478)
Q Consensus 397 ai~~a~~~~v~~~~g~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~lf~ 452 (478)
.+.-+.....++.+.+++. +++.+.....++....+++++...--...+.+.+++.
T Consensus 311 PiEEs~~~~Fsk~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~ 375 (549)
T PF04506_consen 311 PIEESSRLYFSKLLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLG 375 (549)
T ss_pred cHHHHHHHHHHHHhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHh
Confidence 6888888888888765433 4566677777777777776666665556666666653
No 40
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.66 E-value=0.92 Score=46.10 Aligned_cols=322 Identities=13% Similarity=0.087 Sum_probs=161.9
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-cCcchhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCCCC
Q 011769 100 VQLDLIMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDS 178 (478)
Q Consensus 100 ~~~~i~~~~~P~~~~~~~~~~~~~v~~~~ig~-lG~~~laa~~~~~~l~~~~~~i~~~gl~~~~~~~vs~~~g~~~~~~~ 178 (478)
......+.+.-.+..+++..+..+..+.++-| ++++.+|..++-..+..-.. . + ++-=...+.....|..+.
T Consensus 6 vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTi--L-F-lsREair~A~l~~gs~~~--- 78 (530)
T KOG2864|consen 6 VLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTI--L-F-LSREAIRLAELRIGSEPA--- 78 (530)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHH--H-H-hhHHHHHHHhccCCCCCC---
Confidence 44556667777788888888888887777777 99999887765443332221 1 2 233333333333222221
Q ss_pred CCCCCCCCCCCCCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCccchHHHHHHHHHHHhhHHH
Q 011769 179 TSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPA 258 (478)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~ 258 (478)
++..+..+ ..+....++.+..+.+..+ .+.+....++....+....-..+...+...
T Consensus 79 ----------------d~~te~~n----~~wlS~~L~~~i~~~~i~~---wl~~~~s~d~i~~~p~y~~~I~~~~~S~vv 135 (530)
T KOG2864|consen 79 ----------------DTWTEFIN----LLWLSVPLQTAINVACIYF---WLGFLSSSDEISYSPLYAFAIFIIGLSIVV 135 (530)
T ss_pred ----------------ccHHHHHH----hhhhhhhHHHHHHHHHHHH---HHHHhhccchhhcCchHhHHHHHHHHHHHH
Confidence 12333333 3444444444433322211 122222111100112222223333333333
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHH-HHhHHHHHhcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhcCcccc--
Q 011769 259 VVLSLAIQGIFRGFKDTRTPVFCLGLGNFSA-VFMFPMLMYYF-KLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSI-- 334 (478)
Q Consensus 259 ~~~~~~~~~~l~g~g~~~~~~~~~~~~~~v~-i~l~~~li~~~-~~Gi~Gaa~a~~i~~~~~~~~~~~~l~~~~~~~~-- 334 (478)
-.+....--..|..-+.+.-.+...+...+. +..-.+++.+. .+++.-.++|.........+...+++.+..+..+
T Consensus 136 ELlsEp~~iv~Q~~~~~~~~~i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~ 215 (530)
T KOG2864|consen 136 ELLSEPLYIVSQCGLKVQLRAIAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPET 215 (530)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccc
Confidence 3333333333344444444444444444444 22222222222 4556666666665555555433333333222110
Q ss_pred --------------ccccccc-hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc---ChhHHHHHHHHHHHHHHHH-HHH
Q 011769 335 --------------PNMKNLH-FGDYLRSGGYLLGRTLAAVMTITLSTSIAARQ---GALAMAAHQICLQVWLSVS-MLA 395 (478)
Q Consensus 335 --------------~~~~~~~-~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~---g~~~~aa~~i~~~i~~l~~-~~~ 395 (478)
++.+... -++.++......-..+..++...-+..+++.. .-.+-|.|.+..|..++.. ++.
T Consensus 216 ~~~~r~Sdllpk~~~n~~~~ffd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF 295 (530)
T KOG2864|consen 216 EPFSRFSDLLPKVSENERGIFFDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIF 295 (530)
T ss_pred cchhhhhhhccCCCCCCccccccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHh
Confidence 0100111 24567777777777777777777666666533 3456677888888876663 445
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhHHHhhcc
Q 011769 396 DAQAASGQALIASSFAKGDYNTVKE---ITHFALKTGLFTGVTLAVILGASFNYLATLF 451 (478)
Q Consensus 396 ~ai~~a~~~~v~~~~g~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~i~~lf 451 (478)
..+--......+|.+.+++.|+.|+ ...+.++....+++...+.=....+.+..++
T Consensus 296 ~PIEEss~~~FA~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~ly 354 (530)
T KOG2864|consen 296 RPIEESSYIYFARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLY 354 (530)
T ss_pred ChhHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHH
Confidence 6677888888888887766666555 4455666666666554444444455566665
No 41
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=96.56 E-value=0.0093 Score=56.83 Aligned_cols=71 Identities=14% Similarity=0.217 Sum_probs=65.9
Q ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-cCcchhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 011769 98 QNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAED 169 (478)
Q Consensus 98 ~~~~~~i~~~~~P~~~~~~~~~~~~~v~~~~ig~-lG~~~laa~~~~~~l~~~~~~i~~~gl~~~~~~~vs~~ 169 (478)
.+..|++++.+.|..+.++...+...+|+.++++ .|++++|.|+.+.++......+... +.+...|..++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~~~~~~~-~~~~~~P~~s~l 272 (273)
T PF01943_consen 201 KKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAISFLLSS-ISTVLFPRLSRL 272 (273)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Confidence 5668999999999999999999999999999999 8999999999999999999999855 888999998875
No 42
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=94.20 E-value=0.21 Score=46.95 Aligned_cols=65 Identities=18% Similarity=0.219 Sum_probs=58.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhhc-cCcchhhhhhhhHHHHHHHH-HHhhhhhhHHHHHHHHH
Q 011769 103 DLIMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLELASAGVSTSIFNILS-KVFNIPLLSVATSFVAE 168 (478)
Q Consensus 103 ~i~~~~~P~~~~~~~~~~~~~v~~~~ig~-lG~~~laa~~~~~~l~~~~~-~i~~~gl~~~~~~~vs~ 168 (478)
+.++.+.|..+.++.....+.+|..+++. +|++++|.|+.+.++.+... .+. .+++....|..+|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~~~~-~~i~~~~~p~lar 250 (251)
T PF13440_consen 184 RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLPASLLS-SAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhC
Confidence 47999999999999999999999999999 99999999999999999888 555 5588888888776
No 43
>COG4267 Predicted membrane protein [Function unknown]
Probab=93.55 E-value=8.8 Score=38.33 Aligned_cols=274 Identities=14% Similarity=0.109 Sum_probs=150.4
Q ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcccchhhHhHHHHHHHHHHHHHHHHHHHH
Q 011769 143 STSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAM 222 (478)
Q Consensus 143 ~~~l~~~~~~i~~~gl~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (478)
......++..+...|+....++++|...=+++ .+++...+--...++...+..++.+
T Consensus 65 sv~Y~~ifS~IiTgg~q~iiTRfiSD~lF~k~----------------------~~kIlpsy~Gvi~lv~~~a~~ig~~- 121 (467)
T COG4267 65 SVTYCFIFSQIITGGFQLIITRFISDCLFEKK----------------------QRKILPSYIGVILLVTLVAGVIGLI- 121 (467)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----------------------HHHHhHhHHHHHHHHHHHHHHHHHH-
Confidence 33444566667778889999999998765544 3433333333333333333222211
Q ss_pred HHhHHHHHHhcCCCCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhHHHHHhccCC
Q 011769 223 YFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKL 302 (478)
Q Consensus 223 ~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~v~i~l~~~li~~~~~ 302 (478)
+-...++.+ ..|=..................++.+.+|.+...+.-.++.++.+.+..++- ++
T Consensus 122 -------vf~~~~~~s-------i~yk~l~~~~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~---~~ 184 (467)
T COG4267 122 -------VFFVNNQYS-------IVYKILACALFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFL---KS 184 (467)
T ss_pred -------hhhhcCchh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hh
Confidence 111111111 1122223333445556667788999999999999999999999888776665 57
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCccc-cccccccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cC-----
Q 011769 303 GVTGAAISTVGSQYMVTLLMIWYLNKRTILS-IPNMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAAR--QG----- 374 (478)
Q Consensus 303 Gi~Gaa~a~~i~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~--~g----- 374 (478)
++.|..++..+++.+.......+..|..+.. +-.++... ..+--..+++-.....+..+++..+.=. .|
T Consensus 185 ~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~~~i~FdFL~---~~~~y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag 261 (467)
T COG4267 185 PIEGLLLTLDIGIFIILFLLNFYILRYFKSSRRIGFDFLL---YRRKYPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAG 261 (467)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhcccccccceehhh---hhhcchHHHHHHHHHHhHhhhhheeeEecCCCCEeec
Confidence 9999999999999999888888877654322 22333322 2222223455556666666666654311 11
Q ss_pred ------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hc-------CChHHHHHHHHHHHHHHHHHHHHHH
Q 011769 375 ------ALAMAAHQICLQVWLSVSMLADAQAASGQALIASSF----AK-------GDYNTVKEITHFALKTGLFTGVTLA 437 (478)
Q Consensus 375 ------~~~~aa~~i~~~i~~l~~~~~~ai~~a~~~~v~~~~----g~-------~~~~~~~~~~~~~l~~~~~~~~~~~ 437 (478)
.-++..+-....+.--...+...+.+..++.--+.+ |. ++.++.....++.+.-.+-+-...+
T Consensus 262 ~~~~S~lYDvpiF~ayl~~iPs~vvF~i~lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~ 341 (467)
T COG4267 262 PFFASPLYDVPIFYAYLFIIPSMVVFLISLETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLAS 341 (467)
T ss_pred ceecchhhhHHHHHHHHHhcchhheeeeeeeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222221111111111111223333333221111 11 2233444455555555566667778
Q ss_pred HHHHHhhHHHhhccCCcHHHHH
Q 011769 438 VILGASFNYLATLFTSDTQVLG 459 (478)
Q Consensus 438 ~~~~~~~~~i~~lf~~d~~v~~ 459 (478)
+.++++++.+...|.=|+...+
T Consensus 342 l~~flL~~~Ll~~~~lS~~~l~ 363 (467)
T COG4267 342 LLCFLLADALLLWFGLSEYYLD 363 (467)
T ss_pred HHHHHHHHHHHHHcChHHHHHH
Confidence 8889999999988876654333
No 44
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=93.34 E-value=4.8 Score=39.28 Aligned_cols=125 Identities=18% Similarity=0.121 Sum_probs=83.7
Q ss_pred cchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChH
Q 011769 340 LHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQG---ALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKGDYN 416 (478)
Q Consensus 340 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g---~~~~aa~~i~~~i~~l~~~~~~ai~~a~~~~v~~~~g~~~~~ 416 (478)
..++++.++-.|+.++.....+.-.+.+.-+++-. .+.+|+|+++..+.-++..+...+.+....++.+ +.+
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~rs 82 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----KRS 82 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----hhh
Confidence 35689999999999999999999999888887743 3559999999999999988888888776666533 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHH----hhHH-HhhccCCcHHHHHHHHHHHHHHHHHHHH
Q 011769 417 TVKEITHFALKTGLFTGVTLAVI-LGA----SFNY-LATLFTSDTQVLGIVRSGLLVRVYLLLV 474 (478)
Q Consensus 417 ~~~~~~~~~l~~~~~~~~~~~~~-~~~----~~~~-i~~lf~~d~~v~~~~~~~~~~~~~~~~~ 474 (478)
|+....+. .+.+++++++ ..+ +++. +..++.-||++.+.....+.+..+++++
T Consensus 83 --rr~~vl~~---~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl 141 (345)
T PF07260_consen 83 --RRKAVLCM---AVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFL 141 (345)
T ss_pred --hHHHHHHH---HHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 23322222 2333333322 111 2222 3445666888888888777666665554
No 45
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=59.29 E-value=52 Score=25.30 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHH
Q 011769 398 QAASGQALIASSFAKGDYNTVKEITHFALKTGLFTG 433 (478)
Q Consensus 398 i~~a~~~~v~~~~g~~~~~~~~~~~~~~l~~~~~~~ 433 (478)
++...+..+-+.+.+||+++|++..++..+++.+-.
T Consensus 36 ~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~ 71 (82)
T PF04505_consen 36 VAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAI 71 (82)
T ss_pred HHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHH
Confidence 333444567777789999999999999888775433
No 46
>COG4267 Predicted membrane protein [Function unknown]
Probab=50.65 E-value=2.9e+02 Score=28.08 Aligned_cols=93 Identities=13% Similarity=0.211 Sum_probs=57.6
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCchHH
Q 011769 200 LLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPV 279 (478)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~g~g~~~~~~ 279 (478)
.....++.+.-..-+=...++.++..++.+..+++-++ ...+..++-.++...+.....+-.+.--..+-+..+
T Consensus 322 Miltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~------~~l~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l 395 (467)
T COG4267 322 MILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSE------YYLDLFYVDVLGVSCQIVFMSLLNIFLYFDYRRIAL 395 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 33444555555555666667777889999999998443 344555555555555544444444444455566666
Q ss_pred HHHHHHHHHHHHhHHHHHh
Q 011769 280 FCLGLGNFSAVFMFPMLMY 298 (478)
Q Consensus 280 ~~~~~~~~v~i~l~~~li~ 298 (478)
..+..-.+.|.++.+++.-
T Consensus 396 ~~t~~fli~N~ilT~i~l~ 414 (467)
T COG4267 396 ELTALFLISNGILTFIFLE 414 (467)
T ss_pred hhhhHHHHHhHHHHHHHHH
Confidence 6666667778777776654
No 47
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=40.72 E-value=4.6e+02 Score=27.63 Aligned_cols=23 Identities=9% Similarity=0.015 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhHHHHHHhcCCCC
Q 011769 215 GILEALAMYFGSGLFLDIMGISS 237 (478)
Q Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~~ 237 (478)
++-..++.+-.++|+......|.
T Consensus 88 Gig~GivfwgvaEP~~~~~~pP~ 110 (485)
T PF02028_consen 88 GIGAGIVFWGVAEPLYHYQSPPF 110 (485)
T ss_dssp CSSHHHHHHHHHHHHHHHHS-ST
T ss_pred HhcchhhcchhHhhHHHhcCCCC
Confidence 33456667778899988776443
No 48
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=36.31 E-value=3.1e+02 Score=24.36 Aligned_cols=55 Identities=13% Similarity=0.137 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH-HHHHHhHHHH
Q 011769 242 RIPAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGN-FSAVFMFPML 296 (478)
Q Consensus 242 ~~~a~~~l~i~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~-~v~i~l~~~l 296 (478)
......++-+.+++++-.....+...+|+=.+-+.+.....++-- ++..++++++
T Consensus 65 ~t~~G~~igi~~~gv~Si~aAllY~~~l~k~~g~W~Gi~YG~~~W~ivF~~lnP~f 120 (173)
T PF11085_consen 65 NTWLGNLIGIVFIGVFSIVAALLYYALLKKFKGPWPGILYGLAWWAIVFFVLNPIF 120 (173)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcccc
Confidence 334455566666666666666666666666666665555544432 3334444443
No 49
>PRK13852 type IV secretion system protein VirB6; Provisional
Probab=28.05 E-value=5.8e+02 Score=24.94 Aligned_cols=54 Identities=7% Similarity=-0.007 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011769 386 QVWLSVSMLADAQAASGQALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVIL 440 (478)
Q Consensus 386 ~i~~l~~~~~~ai~~a~~~~v~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 440 (478)
++...+..+....-+-.....+..+-+|+.+ .+...+++++++++.++......
T Consensus 30 ~i~s~Isp~~~t~~TLyIil~Gy~I~rG~vd-~~efi~R~ikiaIIvalAl~ag~ 83 (295)
T PRK13852 30 SIQSAVSAPLVACVTLWIIVQGILVMRGELD-ARGGITRVITVSIVVALIVGQAN 83 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCch-hHHHHHHHHHHHHHHHHHHhHHH
Confidence 3333333443344444444556655555554 56788899999988888877753
No 50
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=23.69 E-value=7.7e+02 Score=24.91 Aligned_cols=34 Identities=15% Similarity=0.140 Sum_probs=28.0
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011769 198 RKLLPSVSTALVLALTIGILEALAMYFGSGLFLD 231 (478)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 231 (478)
++.+++.+.+...+.+...+..++.....-|+..
T Consensus 91 ~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 91 SEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999998888888777777766
No 51
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=22.91 E-value=1.3e+02 Score=25.05 Aligned_cols=27 Identities=11% Similarity=0.233 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 011769 305 TGAAISTVGSQYMVTLLMIWYLNKRTI 331 (478)
Q Consensus 305 ~Gaa~a~~i~~~~~~~~~~~~l~~~~~ 331 (478)
.|+.+|.+++-+...++..++++|+++
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444433333333344444433
No 52
>COG3366 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.78 E-value=7.4e+02 Score=24.37 Aligned_cols=92 Identities=14% Similarity=0.130 Sum_probs=53.5
Q ss_pred HHHHHHhcCCCCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhHHH--------HH
Q 011769 226 SGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPM--------LM 297 (478)
Q Consensus 226 ~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~v~i~l~~~--------li 297 (478)
.+|+.+.++-++| ....+. ..+.-...+......-+=+|.=+.+..+...+++++++....++ -+
T Consensus 208 ~~pl~~~L~lp~e--av~v~~-----~~~~~~~~g~~~a~~li~~GiLs~~eali~LliG~ils~~~~~lk~slP~~vsi 280 (311)
T COG3366 208 LHPLTNYLPLPPE--AVTVVL-----TNLANIIAGIVLAAGLLDSGILSEKEALIALLLGGILSLPIIYLKHSLPTYVSI 280 (311)
T ss_pred hhhHhhhcCCCcc--hHHHHH-----HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhHHHhhHHHHHhhcccceee
Confidence 3455556666665 222211 12222223333334444556667888888888888888754433 23
Q ss_pred hccCCchhHHHHHHHHHHHHHHHHHHH
Q 011769 298 YYFKLGVTGAAISTVGSQYMVTLLMIW 324 (478)
Q Consensus 298 ~~~~~Gi~Gaa~a~~i~~~~~~~~~~~ 324 (478)
++.++|...+++.+.+...+...+...
T Consensus 281 fG~k~Glk~~~vn~~v~i~~~i~~v~~ 307 (311)
T COG3366 281 FGRKLGLKIVAVNTAVSILARILIVLV 307 (311)
T ss_pred eccccchHHHHHHHHHHHHHHHHHHHH
Confidence 344688888888888777766555443
Done!