Query 011769
Match_columns 478
No_of_seqs 266 out of 2272
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 14:56:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011769.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011769hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 1.8E-37 6.1E-42 320.9 31.1 352 97-474 7-369 (460)
2 3mkt_A Multi antimicrobial ext 99.9 1.8E-22 6.1E-27 208.3 20.4 255 10-331 188-448 (460)
3 4hkr_A Calcium release-activat 32.4 2.5E+02 0.0086 24.4 11.7 101 374-475 56-165 (214)
4 1pw4_A Glycerol-3-phosphate tr 31.1 3.4E+02 0.012 25.6 17.2 30 102-131 252-281 (451)
5 3o7q_A L-fucose-proton symport 25.4 4.3E+02 0.015 24.8 24.8 33 101-133 25-57 (438)
6 2k1k_A Ephrin type-A receptor 23.9 88 0.003 19.3 3.4 19 304-322 13-31 (38)
7 1lgh_B LH II, B800/850, light 18.8 78 0.0027 20.4 2.4 40 188-227 4-43 (45)
8 2ks1_B Epidermal growth factor 14.7 2.5E+02 0.0087 17.9 4.5 11 318-328 27-37 (44)
9 2jwa_A Receptor tyrosine-prote 11.9 3.2E+02 0.011 17.5 4.3 31 304-335 14-44 (44)
10 1nkz_B Light-harvesting protei 9.0 2.5E+02 0.0087 17.6 2.6 40 190-229 1-40 (41)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=1.8e-37 Score=320.93 Aligned_cols=352 Identities=19% Similarity=0.235 Sum_probs=319.0
Q ss_pred ccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccCcchhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCC
Q 011769 97 VQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSK 176 (478)
Q Consensus 97 ~~~~~~~i~~~~~P~~~~~~~~~~~~~v~~~~ig~lG~~~laa~~~~~~l~~~~~~i~~~gl~~~~~~~vs~~~g~~~~~ 176 (478)
.++..|++++.++|.++++++..+.+.+|+.+++|+|++++|+++++.++.++...+. .|++.+..+.++|++|++|
T Consensus 7 ~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~~~~~-~g~~~~~~~~is~~~g~~~-- 83 (460)
T 3mkt_A 7 YKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFG-VGLLMALVPVVAQLNGAGR-- 83 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHHHHHH-HHHHHHHGGGCTTTTSSSS--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCC--
Confidence 4567899999999999999999999999999999999999999999999988777766 6799999999999988877
Q ss_pred CCCCCCCCCCCCCCCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCccchHHHHHHHHHHHhhH
Q 011769 177 DSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGA 256 (478)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~ 256 (478)
.++.++.+++++.+..+++++.+++ ..+.++++.+++.+++ +.+.+..|+++.+++.
T Consensus 84 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~--~~~~~~~~l~i~~~~~ 140 (460)
T 3mkt_A 84 --------------------QHKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEA--MATKTVGYMHAVIFAV 140 (460)
T ss_dssp --------------------TTTHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTH--HHHHHHHHHTTGGGHH
T ss_pred --------------------hhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHH--HHHHHHHHHHHHHHHH
Confidence 5556688999999999999998765 6788999898887776 8899999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhHHHHHhc-c---CCchhHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 011769 257 PAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYY-F---KLGVTGAAISTVGSQYMVTLLMIWYLNKRTIL 332 (478)
Q Consensus 257 ~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~v~i~l~~~li~~-~---~~Gi~Gaa~a~~i~~~~~~~~~~~~l~~~~~~ 332 (478)
++..+....++++|+.||++.+++.++++.++|+++++++++. + ++|+.|+++++++++++..++.+++++|+++.
T Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~ 220 (460)
T 3mkt_A 141 PAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRL 220 (460)
T ss_dssp HHHHHHHHHTTTTCTTSCCTTTHHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcch
Confidence 9999999999999999999999999999999999999999986 3 79999999999999999999998888776543
Q ss_pred ccc-------cccccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011769 333 SIP-------NMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQAL 405 (478)
Q Consensus 333 ~~~-------~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~aa~~i~~~i~~l~~~~~~ai~~a~~~~ 405 (478)
.+. +.++..+|++++++.|.+++.+..++.+.+++.+++++|++++++|++++++..+..++..+++++.+|.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~ 300 (460)
T 3mkt_A 221 AHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIR 300 (460)
T ss_dssp CCCCCSCCCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 2334457999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHHHHHHHHHHHHH
Q 011769 406 IASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLVRVYLLLV 474 (478)
Q Consensus 406 v~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~~~~~~~~~~~ 474 (478)
+++++|++|.+++|+..+++++++..++++.++++.++++++.++|++|+++.+.....+++.....++
T Consensus 301 i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~ 369 (460)
T 3mkt_A 301 VGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCM 369 (460)
T ss_dssp HHHHHHSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998888888777776665544
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.89 E-value=1.8e-22 Score=208.28 Aligned_cols=255 Identities=14% Similarity=0.076 Sum_probs=215.9
Q ss_pred ccccccchhHHHHHHhhhcccCceEEEeecCCCCccccccccccCCCCcccccCCCCCcCCcccccCCCCCCCCcccchh
Q 011769 10 RSCGITGTSFQRRAINKMGKAFPIYSMVIAPPNCSFGVINRAKNGFNPAIMCCGSVSDQHASDYITINPSGVGESESRKS 89 (478)
Q Consensus 10 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (478)
+++|+.|.+++ +.+++.......+.++.+.+... .... ..+...+
T Consensus 188 p~~g~~g~a~a-~~i~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~-------------------------------- 232 (460)
T 3mkt_A 188 PELGGVGCGVA-TAIVYWIMLLLLLFYIVTSKRLA-HVKV-FETFHKP-------------------------------- 232 (460)
T ss_dssp CCCHHHHHHHH-HHHHHHHHHHHHHHHHHTCSSCC-CCCC-SCCCCSS--------------------------------
T ss_pred cccchhhHHHH-HHHHHHHHHHHHHHHHHhCcchh-hhhh-hhccccc--------------------------------
Confidence 47999999999 88888887776555554432210 0000 0000001
Q ss_pred hhcccccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccCcchhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 011769 90 AATSQSCVQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAED 169 (478)
Q Consensus 90 ~~~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~~~v~~~~ig~lG~~~laa~~~~~~l~~~~~~i~~~gl~~~~~~~vs~~ 169 (478)
+++..|+++++++|..++++.+.+...+|+.+++++|++++|+|++++++.++...+. .+++.+..|.++++
T Consensus 233 -------~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~~~~-~~~~~a~~p~i~~~ 304 (460)
T 3mkt_A 233 -------QPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFP-MSIGAAVSIRVGHK 304 (460)
T ss_dssp -------TTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 2344778999999999999999999999999999999999999999999999999888 56999999999999
Q ss_pred hhcCCCCCCCCCCCCCCCCCCCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCccchHHHHHHH
Q 011769 170 ISRSSSKDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFL 249 (478)
Q Consensus 170 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l 249 (478)
+|++| .++.++..++++.+...++++.+++++++++++..++..|++ +.+.+..++
T Consensus 305 ~g~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~--~~~~~~~~l 360 (460)
T 3mkt_A 305 LGEQD----------------------TKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQV--VVALAMQLL 360 (460)
T ss_dssp HHSSC----------------------CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCST--THHHHHHHH
T ss_pred HcCCC----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHHHH
Confidence 99988 445567899999999999999999999999999999987766 899999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH-HHHHHhHHHHHhc----cC-CchhHHHHHHHHHHHHHHHHHH
Q 011769 250 SLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGN-FSAVFMFPMLMYY----FK-LGVTGAAISTVGSQYMVTLLMI 323 (478)
Q Consensus 250 ~i~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~-~v~i~l~~~li~~----~~-~Gi~Gaa~a~~i~~~~~~~~~~ 323 (478)
++.+++.++.+++.+..+++++.||+|.+++.++++. ++++++++++... ++ +|+.|+|+++.+++.+..++..
T Consensus 361 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~ 440 (460)
T 3mkt_A 361 LFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLG 440 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 9999999999886 66 9999999999999999988887
Q ss_pred HHHHhcCc
Q 011769 324 WYLNKRTI 331 (478)
Q Consensus 324 ~~l~~~~~ 331 (478)
++++|+.+
T Consensus 441 ~~~~~~~~ 448 (460)
T 3mkt_A 441 QRLYWLQK 448 (460)
T ss_dssp SSSSSSCC
T ss_pred HHHHHHHH
Confidence 77665443
No 3
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=32.37 E-value=2.5e+02 Score=24.43 Aligned_cols=101 Identities=14% Similarity=0.107 Sum_probs=56.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 011769 374 GALAMAAHQICLQVWLSVSMLADAQAASGQALIASSF--------AKGDYNTVKEITHFALKTGLFTGVTLAVILGASFN 445 (478)
Q Consensus 374 g~~~~aa~~i~~~i~~l~~~~~~ai~~a~~~~v~~~~--------g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 445 (478)
.+.-+.+|+++..+.-.+.+++.=+++-..|-+-..- ...-.++.++.....-.++.++|.++..+-....-
T Consensus 56 p~~LLi~fav~Ttllv~vml~AlMIsTcILPnIeav~~~h~~~~v~esPH~r~~~yIE~AW~fST~lGi~LFL~evall~ 135 (214)
T 4hkr_A 56 PPGMLIAFAICTTLLVAVHMLALMISTCILPNIETVSNLHSISLVHESPHERLHWYIETAWAFSTLLGLILFLLEIAILC 135 (214)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHTTTC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455888999988888888887777777666654332 23334566666666656665555554444443332
Q ss_pred HHhhcc-CCcHHHHHHHHHHHHHHHHHHHHh
Q 011769 446 YLATLF-TSDTQVLGIVRSGLLVRVYLLLVC 475 (478)
Q Consensus 446 ~i~~lf-~~d~~v~~~~~~~~~~~~~~~~~~ 475 (478)
++ +.+ .+.+........++|..+.++.|.
T Consensus 136 WV-KF~~~~~~aa~~~t~vliPv~i~F~~Fa 165 (214)
T 4hkr_A 136 WV-KFYDLSRRAAWSATVVLIPVMIIFMAFA 165 (214)
T ss_dssp HH-HHTTTCHHHHHHHHHHTHHHHHHHHHHH
T ss_pred eE-EeecCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 22 333 344555555666677777776664
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=31.12 E-value=3.4e+02 Score=25.61 Aligned_cols=30 Identities=7% Similarity=-0.029 Sum_probs=13.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 011769 102 LDLIMLSLPAIAGQAIEPMAQLMETAYIGR 131 (478)
Q Consensus 102 ~~i~~~~~P~~~~~~~~~~~~~v~~~~ig~ 131 (478)
+.++...+-.++...........-..++..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKE 281 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555444444433344433
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=25.45 E-value=4.3e+02 Score=24.83 Aligned_cols=33 Identities=3% Similarity=0.054 Sum_probs=15.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccC
Q 011769 101 QLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLG 133 (478)
Q Consensus 101 ~~~i~~~~~P~~~~~~~~~~~~~v~~~~ig~lG 133 (478)
.+.++....-.++..............+..++|
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 57 (438)
T 3o7q_A 25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFT 57 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcC
Confidence 344444444444444444444444444444454
No 6
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=23.89 E-value=88 Score=19.30 Aligned_cols=19 Identities=0% Similarity=0.053 Sum_probs=8.4
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 011769 304 VTGAAISTVGSQYMVTLLM 322 (478)
Q Consensus 304 i~Gaa~a~~i~~~~~~~~~ 322 (478)
+.|+.++.+.+-.+...+.
T Consensus 13 IAGiVvG~v~gv~li~~l~ 31 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGIL 31 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHHHHHH
Confidence 3444555444444443333
No 7
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=18.76 E-value=78 Score=20.41 Aligned_cols=40 Identities=10% Similarity=0.132 Sum_probs=28.1
Q ss_pred CCCCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 011769 188 SYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSG 227 (478)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (478)
+..+.-.++.++..+++.++++.-..+.++.=++.+...|
T Consensus 4 s~tGLT~~EA~EfH~~~~~~~~~F~~iA~vAH~L~~~wrP 43 (45)
T 1lgh_B 4 SLSGLTEEEAIAVHDQFKTTFSAFIILAAVAHVLVWVWKP 43 (45)
T ss_dssp CSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455556667788888888888888777777666665443
No 8
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=14.67 E-value=2.5e+02 Score=17.86 Aligned_cols=11 Identities=18% Similarity=0.359 Sum_probs=4.2
Q ss_pred HHHHHHHHHHh
Q 011769 318 VTLLMIWYLNK 328 (478)
Q Consensus 318 ~~~~~~~~l~~ 328 (478)
..+..+++++|
T Consensus 27 i~~~~~~~~RR 37 (44)
T 2ks1_B 27 VALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhhh
Confidence 33333344443
No 9
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=11.92 E-value=3.2e+02 Score=17.46 Aligned_cols=31 Identities=6% Similarity=0.070 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Q 011769 304 VTGAAISTVGSQYMVTLLMIWYLNKRTILSIP 335 (478)
Q Consensus 304 i~Gaa~a~~i~~~~~~~~~~~~l~~~~~~~~~ 335 (478)
+.+..++ ++-.++..+....+++|++...+.
T Consensus 14 Ia~~vVG-vll~vi~~l~~~~~~RRR~~~~kK 44 (44)
T 2jwa_A 14 IISAVVG-ILLVVVLGVVFGILIKRRQQKIRK 44 (44)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHCSCCCC
T ss_pred hHHHHHH-HHHHHHHHHHHHhheehhhhhccC
No 10
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=9.04 E-value=2.5e+02 Score=17.60 Aligned_cols=40 Identities=8% Similarity=0.097 Sum_probs=0.0
Q ss_pred CCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 011769 190 NGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLF 229 (478)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 229 (478)
.+.-.++.++..+.+.+++..-..+.++.=++.+...|++
T Consensus 1 ~gLT~~EA~EfH~~~~~~~~~F~~iA~vAH~l~w~wrPWl 40 (41)
T 1nkz_B 1 ATLTAEQSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Done!