Query 011769
Match_columns 478
No_of_seqs 266 out of 2272
Neff 8.8
Searched_HMMs 13730
Date Mon Mar 25 14:57:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011769.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011769hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 65.7 44 0.0032 29.6 18.1 27 301-327 406-432 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 60.7 34 0.0025 29.6 11.7 9 302-310 376-384 (417)
3 d1lghb_ f.3.1.1 (B:) Light-har 21.8 29 0.0021 20.6 2.4 39 189-227 3-41 (43)
4 d1iwga8 f.35.1.1 (A:513-566,A: 13.5 2.2E+02 0.016 22.7 7.3 57 307-363 115-172 (222)
5 d3dhwa1 f.58.1.1 (A:6-208) D-m 10.1 3.5E+02 0.025 20.6 9.4 47 405-451 116-162 (203)
6 d1dsqa_ g.40.1.1 (A:) Nucleic 6.9 66 0.0048 16.1 0.6 7 10-16 6-12 (26)
7 d3cuma2 c.2.1.6 (A:1-162) Hydr 6.2 81 0.0059 24.0 1.2 20 7-26 4-23 (162)
8 d1pgja2 c.2.1.6 (A:1-178) 6-ph 5.2 80 0.0058 24.3 0.5 20 7-26 4-23 (178)
9 d2pgda2 c.2.1.6 (A:1-176) 6-ph 4.9 87 0.0063 24.2 0.5 20 7-26 5-24 (176)
10 d1jo5a_ f.3.1.1 (A:) Light-har 4.8 88 0.0064 18.9 0.4 38 190-227 9-46 (48)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=65.68 E-value=44 Score=29.57 Aligned_cols=27 Identities=19% Similarity=0.381 Sum_probs=13.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHH
Q 011769 301 KLGVTGAAISTVGSQYMVTLLMIWYLN 327 (478)
Q Consensus 301 ~~Gi~Gaa~a~~i~~~~~~~~~~~~l~ 327 (478)
..|..+..+.......+..++......
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466665555444444444444444443
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=60.65 E-value=34 Score=29.61 Aligned_cols=9 Identities=33% Similarity=0.671 Sum_probs=4.2
Q ss_pred CchhHHHHH
Q 011769 302 LGVTGAAIS 310 (478)
Q Consensus 302 ~Gi~Gaa~a 310 (478)
.|.....+.
T Consensus 376 ~g~~~~~~~ 384 (417)
T d1pv7a_ 376 IGFQGAYLV 384 (417)
T ss_dssp HCHHHHHHH
T ss_pred HCHHHHHHH
Confidence 455544433
No 3
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=21.83 E-value=29 Score=20.59 Aligned_cols=39 Identities=8% Similarity=0.117 Sum_probs=26.7
Q ss_pred CCCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 011769 189 YNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSG 227 (478)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (478)
..+.-.++.++...++.++++.-..+.++.=++.+...|
T Consensus 3 ~sGLT~~EA~EfH~~~~~g~~~F~~iAvvAHiLvw~wrP 41 (43)
T d1lghb_ 3 LSGLTEEEAIAVHDQFKTTFSAFIILAAVAHVLVWVWKP 41 (43)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344455667777888888888877777777666655433
No 4
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=13.45 E-value=2.2e+02 Score=22.70 Aligned_cols=57 Identities=11% Similarity=-0.022 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc-CccccccccccchHHHHHhhHHHHHHHHHHHHHH
Q 011769 307 AAISTVGSQYMVTLLMIWYLNKR-TILSIPNMKNLHFGDYLRSGGYLLGRTLAAVMTI 363 (478)
Q Consensus 307 aa~a~~i~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~ 363 (478)
..+...++..+...+.+...+++ ++....+.+..-.+..-+.+-|.+...+.....+
T Consensus 115 ~g~i~l~Gi~v~~~i~~~~~~~~~~~~~g~~~~~Ai~~a~~~~~~~i~~t~ltti~gf 172 (222)
T d1iwga8 115 VGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLRPILMTSLAFILGV 172 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCTTHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhhhHHHHHHHHhccccccccCCHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 34444555555555554443332 2222222222112223334446666555554443
No 5
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}
Probab=10.13 E-value=3.5e+02 Score=20.62 Aligned_cols=47 Identities=11% Similarity=0.155 Sum_probs=35.0
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcc
Q 011769 405 LIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLF 451 (478)
Q Consensus 405 ~v~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~lf 451 (478)
..++.+|.++.+..++.......-.++.+........+-...+....
T Consensus 116 Eaa~~lGas~~q~~~~vilP~~~p~i~~~~~~~~~~~i~~~~~~~~i 162 (203)
T d3dhwa1 116 EASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAV 162 (203)
T ss_dssp THHHHHTCCTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCCST
T ss_pred HHHHHcCCchhhhhHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888899999999999888888888888877777655443344333
No 6
>d1dsqa_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]}
Probab=6.94 E-value=66 Score=16.09 Aligned_cols=7 Identities=71% Similarity=1.146 Sum_probs=3.5
Q ss_pred ccccccc
Q 011769 10 RSCGITG 16 (478)
Q Consensus 10 ~~~~~~g 16 (478)
|+||-||
T Consensus 6 fscgktg 12 (26)
T d1dsqa_ 6 FSCGKTG 12 (26)
T ss_dssp TTTCCBS
T ss_pred EecCCcc
Confidence 4555554
No 7
>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=6.19 E-value=81 Score=24.00 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=16.7
Q ss_pred cccccccccchhHHHHHHhh
Q 011769 7 IGGRSCGITGTSFQRRAINK 26 (478)
Q Consensus 7 ~~~~~~~~~g~~~~~~~~~~ 26 (478)
||..++|.+|.+.+++..++
T Consensus 4 Ig~IGlG~MG~~iA~~L~~~ 23 (162)
T d3cuma2 4 IAFIGLGHMGAPMATNLLKA 23 (162)
T ss_dssp EEEECCSTTHHHHHHHHHHT
T ss_pred EEEEEEHHHHHHHHHHHHHC
Confidence 77889999999999777664
No 8
>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}
Probab=5.20 E-value=80 Score=24.33 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=16.9
Q ss_pred cccccccccchhHHHHHHhh
Q 011769 7 IGGRSCGITGTSFQRRAINK 26 (478)
Q Consensus 7 ~~~~~~~~~g~~~~~~~~~~ 26 (478)
||..++|.+|.+.+++.+.+
T Consensus 4 IGvIGlG~MG~~ma~~L~~~ 23 (178)
T d1pgja2 4 VGVVGLGVMGANLALNIAEK 23 (178)
T ss_dssp EEEECCSHHHHHHHHHHHHT
T ss_pred EEEEeehHHHHHHHHHHHHC
Confidence 78889999999999776654
No 9
>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}
Probab=4.90 E-value=87 Score=24.18 Aligned_cols=20 Identities=10% Similarity=0.079 Sum_probs=16.4
Q ss_pred cccccccccchhHHHHHHhh
Q 011769 7 IGGRSCGITGTSFQRRAINK 26 (478)
Q Consensus 7 ~~~~~~~~~g~~~~~~~~~~ 26 (478)
||..++|.+|++.+++.+.+
T Consensus 5 Ig~IGlG~MG~~mA~~L~~~ 24 (176)
T d2pgda2 5 IALIGLAVMGQNLILNMNDH 24 (176)
T ss_dssp EEEECCSHHHHHHHHHHHHT
T ss_pred EEEEeEhHHHHHHHHHHHHC
Confidence 67889999999999666554
No 10
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.84 E-value=88 Score=18.87 Aligned_cols=38 Identities=21% Similarity=0.292 Sum_probs=24.8
Q ss_pred CCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 011769 190 NGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSG 227 (478)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (478)
.+.-.++.++..+++..+++.-..++++.=++.+...|
T Consensus 9 tGLT~~EA~E~H~~~~~g~~~F~~iAvvAH~L~w~wrP 46 (48)
T d1jo5a_ 9 TGLTDEQAQELHSVYMSGLWLFSAVAIVAHLAVYIWRP 46 (48)
T ss_dssp GGGHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444556777778888887777777776666665443
Done!