BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011770
(478 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 127/290 (43%), Gaps = 43/290 (14%)
Query: 14 FLVTGGLGHVGSALCLELVRRGAY------QVRAFDLRT----NSPWSHLLINHGVHCIQ 63
LVTGG G +GS +L+ GAY +V D T + + + + + +
Sbjct: 3 LLVTGGAGFIGSHFVRQLLA-GAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVH 61
Query: 64 GDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQR 123
GD+ + + RGVD + H A+ + + E N+ GT +++ ++ G+ R
Sbjct: 62 GDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGR 121
Query: 124 LVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRK 183
+V+VST N V+G + + ES P P Y SK+ LV ++ R + + R
Sbjct: 122 VVHVST-NQVYGSIDSGSWTESSPLEP----NSPYAASKA-GSDLVARAYHRTYGLDVR- 174
Query: 184 CLYTCAVRPAAIYGPGE--ERHLPRIVS-LAKLGLVPFKIGEPSVKTDWIYVDNLV--LA 238
R YGP + E+ +P V+ L G +P G+ + +W++ D+ +A
Sbjct: 175 -----ITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPL-YGDGANVREWVHTDDHCRGIA 228
Query: 239 LILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYD 288
L+LA GR +G+ Y + G + E G LL +L D
Sbjct: 229 LVLAG-----------GR---AGEIYHIGGGLELTNRELTGILLDSLGAD 264
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 127/290 (43%), Gaps = 43/290 (14%)
Query: 14 FLVTGGLGHVGSALCLELVRRGAY------QVRAFDLRT----NSPWSHLLINHGVHCIQ 63
LVTGG G +GS +L+ GAY +V D T + + + + + +
Sbjct: 3 LLVTGGAGFIGSHFVRQLLA-GAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVH 61
Query: 64 GDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQR 123
GD+ + + RGVD + H A+ + + E N+ GT +++ ++ G+ R
Sbjct: 62 GDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGR 121
Query: 124 LVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRK 183
+V+VST + V+G + + ES P P Y SK+ LV ++ R + + R
Sbjct: 122 VVHVST-DEVYGSIDSGSWTESSPLEP----NSPYAASKA-GSDLVARAYHRTYGLDVR- 174
Query: 184 CLYTCAVRPAAIYGPGE--ERHLPRIVS-LAKLGLVPFKIGEPSVKTDWIYVDNLV--LA 238
R YGP + E+ +P V+ L G +P G+ + +W++ D+ +A
Sbjct: 175 -----ITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPL-YGDGANVREWVHTDDHCRGIA 228
Query: 239 LILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYD 288
L+LA GR +G+ Y + G + E G LL +L D
Sbjct: 229 LVLAG-----------GR---AGEIYHIGGGLELTNRELTGILLDSLGAD 264
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 18/165 (10%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINH---GVH--CIQGDVVSK 69
LVTGG G++GS C++L++ G + V D NS S L + G H ++GD+ ++
Sbjct: 4 LVTGGSGYIGSHTCVQLLQNG-HDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 70 IDVEK--AARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYV 127
+ + +D V H A G+ + + + N+NGT +I A ++ ++
Sbjct: 63 ALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFS 122
Query: 128 STYNVVFGGKEIVNGNESLPY---FPIDEHVDSYGRSKSVAEQLV 169
ST V+G N +PY FP YG+SK + EQ++
Sbjct: 123 STA-TVYG------DNPKIPYVESFPTGTPQSPYGKSKLMVEQIL 160
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 18/165 (10%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINH---GVH--CIQGDVVSK 69
LVTGG G++GS C++L++ G + V D NS S L + G H ++GD+ ++
Sbjct: 4 LVTGGSGYIGSHTCVQLLQNG-HDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 70 IDVEK--AARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYV 127
+ + +D V H A G+ + + + N+NGT +I A ++ ++
Sbjct: 63 ALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFS 122
Query: 128 STYNVVFGGKEIVNGNESLPY---FPIDEHVDSYGRSKSVAEQLV 169
S+ V+G N +PY FP YG+SK + EQ++
Sbjct: 123 SSA-TVYG------DNPKIPYVESFPTGTPQSPYGKSKLMVEQIL 160
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 18/165 (10%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINH---GVH--CIQGDVVSK 69
LVTGG G++GS C++L++ G + V D NS S L + G H ++GD+ ++
Sbjct: 4 LVTGGSGYIGSHTCVQLLQNG-HDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 70 IDVEK--AARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYV 127
+ + +D V H A G+ + + + N+NGT +I A ++ ++
Sbjct: 63 ALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFS 122
Query: 128 STYNVVFGGKEIVNGNESLPY---FPIDEHVDSYGRSKSVAEQLV 169
S+ V+G N +PY FP YG+SK + EQ++
Sbjct: 123 SSA-TVYG------DNPKIPYVESFPTGTPQSPYGKSKLMVEQIL 160
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 18/165 (10%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINH---GVH--CIQGDVVSK 69
LVTGG G++GS C++L++ G + V D NS S L + G H ++GD+ ++
Sbjct: 4 LVTGGSGYIGSHTCVQLLQNG-HDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 70 IDVEK--AARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYV 127
+ + +D V H A G+ + + + N+NGT +I A ++ ++
Sbjct: 63 ALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF- 121
Query: 128 STYNVVFGGKEIVNGNESLPY---FPIDEHVDSYGRSKSVAEQLV 169
S+ V+G N +PY FP YG+SK + EQ++
Sbjct: 122 SSVATVYG------DNPKIPYVESFPTGTPQSPYGKSKLMVEQIL 160
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 18/165 (10%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINH---GVH--CIQGDVVSK 69
LVTGG G++GS C++L++ G + V D NS S L + G H ++GD+ ++
Sbjct: 4 LVTGGSGYIGSHTCVQLLQNG-HDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 70 IDVEK--AARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYV 127
+ + +D V H A G+ + + + N+NGT +I A ++ ++
Sbjct: 63 ALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF- 121
Query: 128 STYNVVFGGKEIVNGNESLPY---FPIDEHVDSYGRSKSVAEQLV 169
S+ V+G N +PY FP YG+SK + EQ++
Sbjct: 122 SSAATVYG------DNPKIPYVESFPTGTPQSPYGKSKLMVEQIL 160
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 12/162 (7%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINH---GVH--CIQGDVVSK 69
LVTGG G++GS C++L++ G + V D NS S L + G H ++GD+ ++
Sbjct: 4 LVTGGSGYIGSHTCVQLLQNG-HDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 70 IDVEK--AARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYV 127
+ + +D V H A G+ + + + N+NGT +I A ++ ++
Sbjct: 63 ALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFS 122
Query: 128 STYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLV 169
S+ V+G + + ES FP YG+SK + EQ++
Sbjct: 123 SSA-TVYGDQPKIPYVES---FPTGTPQSPYGKSKLMVEQIL 160
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 12/162 (7%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINH---GVH--CIQGDVVSK 69
LVTGG G++GS C++L++ G + V D NS S L + G H ++GD+ ++
Sbjct: 4 LVTGGSGYIGSHTCVQLLQNG-HDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 70 IDVEK--AARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYV 127
+ + +D V H A G+ + + + N+NGT +I A ++ ++
Sbjct: 63 ALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF- 121
Query: 128 STYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLV 169
S+ V+G + + ES FP YG+SK + EQ++
Sbjct: 122 SSAATVYGDQPKIPYVES---FPTGTPQSPYGKSKLMVEQIL 160
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 18/165 (10%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINH---GVH--CIQGDVVSK 69
LVTGG G++GS C++L++ G + V D NS S L + G H ++GD+ ++
Sbjct: 4 LVTGGSGYIGSHTCVQLLQNG-HDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 70 IDVEK--AARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYV 127
+ + +D V H A G+ + + + N+NGT +I A ++ ++
Sbjct: 63 ALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF- 121
Query: 128 STYNVVFGGKEIVNGNESLPY---FPIDEHVDSYGRSKSVAEQLV 169
S+ V+G N +PY FP +G+SK + EQ++
Sbjct: 122 SSAATVYG------DNPKIPYVESFPTGTPQSPFGKSKLMVEQIL 160
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 79/162 (48%), Gaps = 12/162 (7%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINH---GVH--CIQGDVVSK 69
LVTGG G++GS C++L++ G + V D NS S L + G H ++GD+ ++
Sbjct: 4 LVTGGSGYIGSHTCVQLLQNG-HDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 70 IDVEK--AARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYV 127
+ + +D V H A G+ + + + N+NGT +I A ++ ++
Sbjct: 63 ALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFS 122
Query: 128 STYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLV 169
S+ V+G + + ES FP +G+SK + EQ++
Sbjct: 123 SSA-TVYGDQPKIPYVES---FPTGTPQSPFGKSKLMVEQIL 160
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 79/162 (48%), Gaps = 12/162 (7%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINH---GVH--CIQGDVVSK 69
LVTGG G++GS C++L++ G + V D NS S L + G H ++GD+ ++
Sbjct: 4 LVTGGSGYIGSHTCVQLLQNG-HDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 70 IDVEK--AARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYV 127
+ + +D V H A G+ + + + N+NGT +I A ++ ++
Sbjct: 63 ALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF- 121
Query: 128 STYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLV 169
S+ V+G + + ES FP +G+SK + EQ++
Sbjct: 122 SSAATVYGDQPKIPYVES---FPTGTPQSPFGKSKLMVEQIL 160
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 15/158 (9%)
Query: 14 FLVTGGLGHVGSALCLELVRR-GAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDV 72
LVTG G +G+ L L + G V A D+ G+ I DV ++ ++
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRD-------TGGIKFITLDVSNRDEI 54
Query: 73 EKAAR--GVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTY 130
++A +D +FH+A +S K +VN+NGT +++EA + ++++V ST
Sbjct: 55 DRAVEKYSIDAIFHLAGI-LSAKGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPSTI 113
Query: 131 NVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQL 168
VFG + N +P I YG +K AE L
Sbjct: 114 G-VFGPETPKN---KVPSITITRPRTMYGVTKIAAELL 147
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
Length = 317
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 15/158 (9%)
Query: 14 FLVTGGLGHVGSALCLELVRR-GAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDV 72
LVTG G +G+ L L + G V A D+ G+ I DV ++ ++
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRD-------TGGIKFITLDVSNRDEI 54
Query: 73 EKAAR--GVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTY 130
++A +D +FH+A +S K +VN+NGT +++EA + ++++V ST
Sbjct: 55 DRAVEKYSIDAIFHLAGI-LSAKGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPSTI 113
Query: 131 NVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQL 168
VFG + N +P I +G +K AE L
Sbjct: 114 G-VFGPETPKN---KVPSITITRPRTMFGVTKIAAELL 147
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 8/128 (6%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS-----HLLINHGVHCIQGDV 66
K LVTGG G++GS +EL+ G Y D +NS + +L H + + D+
Sbjct: 12 KIVLVTGGAGYIGSHTVVELIENG-YDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDL 70
Query: 67 VSKIDVEKAAR--GVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRL 124
+ +EK + +D V H A G+ R NI GT ++E ++ + +
Sbjct: 71 CDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKF 130
Query: 125 VYVSTYNV 132
V+ S+ V
Sbjct: 131 VFSSSATV 138
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 74/159 (46%), Gaps = 16/159 (10%)
Query: 14 FLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVE 73
+VTGG G +GS + +L V + S + +N ++ D+ + D++
Sbjct: 4 IVVTGGAGFIGSHVVDKLSESNEIVV----IDNLSSGNEEFVNEAARLVKADLAAD-DIK 58
Query: 74 KAARGVDCVFHVASYGMSGKEMLQFGRVDEV---NINGTCHVIEACLEFGIQRLVYVSTY 130
+G + V+H+A+ + + DE+ N+ T ++EA + G+ R+V+ ST
Sbjct: 59 DYLKGAEEVWHIAA---NPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTST- 114
Query: 131 NVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLV 169
+ V+G +++ E P PI YG SK E L+
Sbjct: 115 STVYGEAKVIPTPEDYPTHPI----SLYGASKLACEALI 149
>pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4ID9|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4IDG|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
pdb|4IDG|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
Length = 347
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 70/156 (44%), Gaps = 16/156 (10%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEK 74
LVTG G VG A+ L +G VR FDLR + G + G + +
Sbjct: 23 LVTGSAGRVGRAVVAALRTQG-RTVRGFDLRPSGT--------GGEEVVGSLEDGQALSD 73
Query: 75 AARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVF 134
A GV V H+ ++ MS + R+ VN+ GT +++A G++R V+ S+ V
Sbjct: 74 AIMGVSAVLHLGAF-MSWAPADR-DRMFAVNVEGTRRLLDAASAAGVRRFVFASSGEVYP 131
Query: 135 GGK-EIVNGNESLPYFPIDEHVDSYGRSKSVAEQLV 169
+ E + E P P YG +K + E+LV
Sbjct: 132 ENRPEFLPVTEDHPLCP----NSPYGLTKLLGEELV 163
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 99/248 (39%), Gaps = 44/248 (17%)
Query: 14 FLVTGGLGHVGSALCLELVRR--------------GAYQVRAFDLRTNSPWSHLLINHGV 59
LVTGG+G +GS ++ + G+ DL + ++
Sbjct: 6 LLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYT-------- 57
Query: 60 HCIQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEF 119
++GDV V++ R VD V H+A+ + + N+ GT ++E+
Sbjct: 58 -FVKGDVADYELVKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRE 116
Query: 120 GIQ-RLVYVST---YNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGR 175
+ R V+VST Y + G + +P P Y +K+ ++ LVL R
Sbjct: 117 NPEVRFVHVSTDEVYGDILKGS-FTENDRLMPSSP-------YSATKAASDMLVLGWT-R 167
Query: 176 PFKKNNRKCLYTCAVRPAAIYGPGE--ERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVD 233
+ N R YGP + E+ +P+ + A LGL G DW+YV+
Sbjct: 168 TYNLN------ASITRCTNNYGPYQFPEKLIPKTIIRASLGLKIPIYGTGKNVRDWLYVE 221
Query: 234 NLVLALIL 241
+ V A+ L
Sbjct: 222 DHVRAIEL 229
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 111/240 (46%), Gaps = 37/240 (15%)
Query: 14 FLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVE 73
+VTGG G +GS L +LV G Y+V D ++ + + +H D++
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELG-YEVVVVDNLSSGRREFVNPSAELHV--------RDLK 53
Query: 74 KAARGV----DCVFHVAS---YGMSGKE-MLQFGRVDEVNINGTCHVIEACLEFGIQRLV 125
+ G D VFH A+ +S E ++ F N+ T +V+E + G++ +V
Sbjct: 54 DYSWGAGIKGDVVFHFAANPEVRLSTTEPIVHFNE----NVVATFNVLEWARQTGVRTVV 109
Query: 126 YVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCL 185
+ S+ + V+G +++ E PY PI YG +K+ E ++ + R F +CL
Sbjct: 110 FASS-STVYGDADVIPTPEEEPYKPI----SVYGAAKAAGE-VMCATYARLF---GVRCL 160
Query: 186 YTCAVRPAAIYGPGEERH---LPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILA 242
AVR A + GP RH I+ L + V +G+ + + ++YV + V A + A
Sbjct: 161 ---AVRYANVVGP-RLRHGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAA 216
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 110/242 (45%), Gaps = 45/242 (18%)
Query: 14 FLVTGGLGHVGSALCLELVRRGAYQVRAFDL--RTNSPWSHLLINHGVHCIQGDVVSKID 71
+VTGG G +GS L +LV G Y+V D+ R + L + D
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELG-YEVVVVDIVQRDTGGSAELHVR--------------D 47
Query: 72 VEKAARGV----DCVFHVAS---YGMSGKE-MLQFGRVDEVNINGTCHVIEACLEFGIQR 123
++ + G D VFH A+ +S E ++ F N+ T +V+E + G++
Sbjct: 48 LKDYSWGAGIKGDVVFHFAANPEVRLSTTEPIVHFNE----NVVATFNVLEWARQTGVRT 103
Query: 124 LVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRK 183
+V+ S+ + V+G +++ E PY PI YG +K+ E ++ + R F +
Sbjct: 104 VVFASS-STVYGDADVIPTPEEEPYKPI----SVYGAAKAAGE-VMCATYARLF---GVR 154
Query: 184 CLYTCAVRPAAIYGPGEERH---LPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALI 240
CL AVR A + GP RH I+ L + V +G+ + + ++YV + V A +
Sbjct: 155 CL---AVRYANVVGP-RLRHGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATL 210
Query: 241 LA 242
A
Sbjct: 211 AA 212
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 111/245 (45%), Gaps = 27/245 (11%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEK 74
LVTGG G +GS + +L+ RG +L T + + GV + D+ K VE+
Sbjct: 4 LVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKREN---VPKGVPFFRVDLRDKEGVER 60
Query: 75 AARGV--DCVFHVASYGMSGKEMLQFGRVD-EVNINGTCHVIEACLEFGIQRLVYVSTYN 131
A R V H A+ S K ++ +D EVN+ G +++EAC ++G+++LV+ ST
Sbjct: 61 AFREFRPTHVSHQAAQ-ASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTGG 119
Query: 132 VVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVR 191
++G E+ G + +P Y SK+ E L G+ + L ++R
Sbjct: 120 AIYG--EVPEGERAEETWPPRPK-SPYAASKAAFEHY-LSVYGQSY------GLKWVSLR 169
Query: 192 PAAIYGPGEERH---------LPRIVSLAKLGLVPFKI-GEPSVKTDWIYVDNLVLALIL 241
+YGP ++ H R++ + L K G+ D++YV ++ A L
Sbjct: 170 YGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEAHAL 229
Query: 242 ASMGL 246
A L
Sbjct: 230 ALFSL 234
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 105/261 (40%), Gaps = 46/261 (17%)
Query: 12 KTFLVTGGLGHVGSALCLELVR----------------RGAYQVRAFDLRTNSPWSHLLI 55
K +L+TG G +GS L L++ R +VR+ L + WS+
Sbjct: 28 KVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRS--LVSEKQWSNFKF 85
Query: 56 NHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEA 115
IQGD+ + D A GVD V H A+ G + + + NI+G +++ A
Sbjct: 86 ------IQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIA 139
Query: 116 CLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGR 175
+ +Q Y ++ + +G P P E D+ G K ++ V K
Sbjct: 140 ARDAKVQSFTYAAS-SSTYGDH---------PGLPKVE--DTIG--KPLSPYAVTKYVNE 185
Query: 176 PFKKNNRKC--LYTCAVRPAAIYGPGEERH------LPRIVSLAKLGLVPFKIGEPSVKT 227
+ +C T +R ++G ++ + +P+ S G + G+
Sbjct: 186 LYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSR 245
Query: 228 DWIYVDNLVLALILASMGLLD 248
D+ Y++N V A +LA+ LD
Sbjct: 246 DFCYIENTVQANLLAATAGLD 266
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 98/236 (41%), Gaps = 21/236 (8%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRG-AYQVRAFDLRT---NSPWSHLLINHGVHCIQGDVV 67
K +VTGG G +GS + V D T N ++ V + GD+
Sbjct: 5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIA 64
Query: 68 SKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYV 127
V+K A D + H A+ + + N GT ++EA ++ I R +V
Sbjct: 65 DAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI-RFHHV 123
Query: 128 STYNVVFGG---KEIVNGNESLP--YFPIDEHVD--SYGRSKSVAEQLVLKSNGRPFKKN 180
ST + V+G +E + G+ P F + + + S S A L++K+ R F
Sbjct: 124 ST-DEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSFGV- 181
Query: 181 NRKCLYTCAVRPAAIYGPGE--ERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDN 234
+ + C+ YGP + E+ +PR ++ G+ P GE DWI+ ++
Sbjct: 182 -KATISNCSNN----YGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTND 232
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 7/148 (4%)
Query: 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN--SPW--SHLLINHGVHCIQG 64
+ GK L+TG G G+ L L+ +G Y+V D R+ + W L I + V I
Sbjct: 1 MSGKRALITGIRGQDGAYLAKLLLEKG-YEVYGADRRSGEFASWRLKELGIENDVKIIHM 59
Query: 65 DVVSKIDVEKAARGV--DCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQ 122
D++ ++ + V D V+++A+ G Q EV+ G ++EA
Sbjct: 60 DLLEFSNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPD 119
Query: 123 RLVYVSTYNVVFGGKEIVNGNESLPYFP 150
Y ++ + +FG + + E P++P
Sbjct: 120 TKFYQASTSEMFGKVQEIPQTEKTPFYP 147
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 111/261 (42%), Gaps = 47/261 (18%)
Query: 6 NEGIEGKTFLVTGGLGHVGSALCLELVRR--GAYQVRAFDLRTNSPWSH----------L 53
++ +E +T L+TGG G VGS L A V R+N+ +S+
Sbjct: 5 DDELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKN 64
Query: 54 LINHGVHCIQGDVVSKIDVEKAAR-GVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHV 112
LI I D+ + +D+ + + D +FH A+ +S ML V + N ++
Sbjct: 65 LIGFKGEVIAADINNPLDLRRLEKLHFDYLFHQAA--VSDTTMLNQELVMKTNYQAFLNL 122
Query: 113 IEACLEFGIQRLVYVSTYNVVFGGK--EIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVL 170
+E +++Y S+ V K +V NES E+V YG SK ++ VL
Sbjct: 123 LEIARS-KKAKVIYASSAGVYGNTKAPNVVGKNES------PENV--YGFSKLCMDEFVL 173
Query: 171 KSNGRPFKKNNRKCLYTCAVRPAAIYGPGE---ERHLPRIVSLAKLGLVPFK------IG 221
+ + +R +YGP E E+ ++ LA LG + FK G
Sbjct: 174 SHSNDNVQ---------VGLRYFNVYGPREFYKEKTASMVLQLA-LGAMAFKEVKLFEFG 223
Query: 222 EPSVKTDWIYVDNLVLALILA 242
E D++Y+++++ A + A
Sbjct: 224 EQL--RDFVYIEDVIQANVKA 242
>pdb|2HRZ|A Chain A, The Crystal Structure Of The Nucleoside-diphosphate-sugar
Epimerase From Agrobacterium Tumefaciens
Length = 342
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 84/202 (41%), Gaps = 22/202 (10%)
Query: 5 ENEGIEGKTFLVTGGLGHVGSALCLELVRRGAY---QVRAFDL-RTNSPWSHLLINHGVH 60
EN +G + G G VG L LV+ G+ V F L P + + V
Sbjct: 8 ENLYFQGXHIAIIGAAGXVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFSGAVD 67
Query: 61 CIQGDVVSKIDVEKAARGV-DCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACL-- 117
D+ + + EK D +FH+A+ +SG+ L F + +N++GT ++ +A
Sbjct: 68 ARAADLSAPGEAEKLVEARPDVIFHLAAI-VSGEAELDFDKGYRINLDGTRYLFDAIRIA 126
Query: 118 --EFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEH----VDSYGRSKSVAEQLVLK 171
+ G + V ++ VFG LPY DE + SYG K++ E L+
Sbjct: 127 NGKDGYKPRVVFTSSIAVFGA--------PLPYPIPDEFHTTPLTSYGTQKAICELLLSD 178
Query: 172 SNGRPFKKNNRKCLYTCAVRPA 193
+ R F L T +RP
Sbjct: 179 YSRRGFFDGIGIRLPTICIRPG 200
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 9/133 (6%)
Query: 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAF--DLRTNSPWSHLLI--NHGVHCI- 62
G + +T VTG G +GS L + L+ RG Y VRA D HLL H
Sbjct: 2 GSQSETVCVTGASGFIGSWLVMRLLERG-YTVRATVRDPTNVKKVKHLLDLPKAETHLTL 60
Query: 63 -QGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEF-G 120
+ D+ + ++A +G VFHVA+ M + V + I G ++++C
Sbjct: 61 WKADLADEGSFDEAIKGCTGVFHVAT-PMDFESKDPENEVIKPTIEGMLGIMKSCAAAKT 119
Query: 121 IQRLVYVSTYNVV 133
++RLV+ S+ V
Sbjct: 120 VRRLVFTSSAGTV 132
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/292 (20%), Positives = 113/292 (38%), Gaps = 30/292 (10%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71
+ L+ GG G++GS +LV G V +L+T + I G GD+ K
Sbjct: 2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDA---ITEGAKFYNGDLRDKAF 58
Query: 72 VEK--AARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129
+ ++ V H A+ + G M + + N+ G ++E EF + + ++ ST
Sbjct: 59 LRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSST 118
Query: 130 YNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVL-KSNGRPFKKNNRKCLYTC 188
+G ++ E P ++YG +K E+++ S + +
Sbjct: 119 A-ATYGEVDVDLITEETMTNP----TNTYGETKLAIEKMLHWYSQASNLRYKIFRYFNVA 173
Query: 189 AVRPAAIYGPGE--ERHLPRIVSLAKLGLVP--------FKIGEPSVKTDWIYVDNLVLA 238
P I G E HL +V LG + + + D+I+V++LV A
Sbjct: 174 GATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVEDLVAA 233
Query: 239 LILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLP 290
L GL D G Y + +G + E + + + ++++P
Sbjct: 234 HFL---GLKDLQNG------GESDFYNLGNGNGFSVKEIVDAVREVTNHEIP 276
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 28/176 (15%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQV------RAFDLRTNSPWS----HLLINHGVHC 61
+ LVTGG G++GS LEL+ G V AF + P S L V
Sbjct: 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEF 62
Query: 62 IQGDVVSKIDVEKAARGVD--CVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEF 119
+ D++ + +++ + V H A G+ + + VN+ GT ++E
Sbjct: 63 EEMDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLEIMKAH 122
Query: 120 GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEH------VDSYGRSKSVAEQLV 169
G++ LV+ S+ V+G + Y P+DE + YG+SK E+++
Sbjct: 123 GVKNLVFSSS-ATVYGNPQ---------YLPLDEAHPTGGCTNPYGKSKFFIEEMI 168
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 28/176 (15%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQV------RAFDLRTNSPWS----HLLINHGVHC 61
+ LVTGG G++GS LEL+ G V AF + P S L V
Sbjct: 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEF 62
Query: 62 IQGDVVSKIDVEKAARGVD--CVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEF 119
+ D++ + +++ + V H A G+ + + VN+ GT ++E
Sbjct: 63 EEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH 122
Query: 120 GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEH------VDSYGRSKSVAEQLV 169
G++ LV+ S+ V+G + Y P+DE + YG+SK E+++
Sbjct: 123 GVKNLVFSSS-ATVYGNPQ---------YLPLDEAHPTGGCTNPYGKSKFFIEEMI 168
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 28/176 (15%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQV------RAFDLRTNSPWS----HLLINHGVHC 61
+ LVTGG G++GS LEL+ G V AF + P S L V
Sbjct: 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEF 62
Query: 62 IQGDVVSKIDVEKAARGVD--CVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEF 119
+ D++ + +++ + V H A G+ + + VN+ GT ++E
Sbjct: 63 EEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH 122
Query: 120 GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEH------VDSYGRSKSVAEQLV 169
G++ LV+ S+ V+G + Y P+DE + YG+SK E+++
Sbjct: 123 GVKNLVFSSS-ATVYGNPQ---------YLPLDEAHPTGGCTNPYGKSKFFIEEMI 168
>pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|B Chain B, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|C Chain C, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|D Chain D, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
Length = 335
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 66/145 (45%), Gaps = 7/145 (4%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLR--TNSPWS--HLLINHGVHCIQGDVV 67
++ LVTG G G+ L L+ +G Y+V R +++ W L I + GD+
Sbjct: 15 RSALVTGITGQDGAYLAKLLLEKG-YRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMA 73
Query: 68 SKIDVEKAARGVD--CVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLV 125
V++A V+++A+ G Q V+ G H++EA +F +
Sbjct: 74 DACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRF 133
Query: 126 YVSTYNVVFGGKEIVNGNESLPYFP 150
Y ++ + +FG + +E+ P++P
Sbjct: 134 YQASTSEMFGLIQAERQDENTPFYP 158
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 85/212 (40%), Gaps = 20/212 (9%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSK 69
+GK VTG G GS L L L GA V+ + L + S I ++ +
Sbjct: 8 QGKRVFVTGHTGFKGSWLSLWLTEMGAI-VKGYALDAPTVPSLFEIVRLNDLMESHIGDI 66
Query: 70 IDVEKAARGV-----DCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRL 124
D EK + + VFH+A+ + Q + N+ GT H++E + G +
Sbjct: 67 RDFEKLRSSIAEFKPEIVFHMAAQPLVRLSYEQPIKTYSTNVMGTVHLLETVKQVGNIKA 126
Query: 125 VYVSTYNVVFGGKEIVNG---NESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNN 181
V T + + +E V G NE + + D Y SK AE + F N
Sbjct: 127 VVNITSDKCYDNREWVWGYRENEPMGGY------DPYSNSKGCAELVASAFRNSFFNPAN 180
Query: 182 --RKCLYTCAVRPAAIYGPGE---ERHLPRIV 208
+ + +VR + G G+ +R +P I+
Sbjct: 181 YEQHGVGLASVRAGNVIGGGDWAKDRLIPDIL 212
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 56/136 (41%), Gaps = 18/136 (13%)
Query: 9 IEGKTFLVTGGLGHVGSALCLELVRRG-AYQVRAFDLRTNSPWSHLLINH---GVHCIQG 64
I KT V GG G V S L L+++G A D SHLL + +
Sbjct: 7 IGKKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRA 66
Query: 65 DVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVN------INGTCHVIEACLE 118
D+ ++ E G D VFHVA+ + F D N I G +V++AC
Sbjct: 67 DLTDELSFEAPIAGCDFVFHVAT-------PVHFASEDPENDMIKPAIQGVVNVMKACTR 119
Query: 119 F-GIQRLVYVSTYNVV 133
++R++ S+ V
Sbjct: 120 AKSVKRVILTSSAAAV 135
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 81/204 (39%), Gaps = 30/204 (14%)
Query: 14 FLVTGGLGHVGSALCLELVRRGAYQVRAFD------LRTNSPWSHLLINHGVHCIQGDVV 67
L+TGG G +GS L + +G + FD N W L N + GD+
Sbjct: 4 LLITGGCGFLGSNLASFALSQGI-DLIVFDNLSRKGATDNLHWLSSLGN--FEFVHGDIR 60
Query: 68 SKIDVEKAARGV--DCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLV 125
+K DV + D FH+A + E+N+ GT +++EA ++ +
Sbjct: 61 NKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNI 120
Query: 126 YVSTYNVVFGGKEIVNGNESLPYFPI-------DEHVD-----SYGRSKSVAEQLVLKSN 173
S+ N V+G E NE+ + DE YG SK A+Q +L
Sbjct: 121 IYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDY- 179
Query: 174 GRPFKKNNRKCLYTCAVRPAAIYG 197
R F N T R +++YG
Sbjct: 180 ARIFGLN------TVVFRHSSMYG 197
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 99/252 (39%), Gaps = 41/252 (16%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71
+ L+TGG G +GSAL ++ + V D T + +L+ V + K+D
Sbjct: 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYA--GNLMSLAPVAQSERFAFEKVD 59
Query: 72 VEKAARGV--------DCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEF---- 119
+ A DCV H+A+ + + E NI GT ++EA +
Sbjct: 60 ICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNAL 119
Query: 120 -----GIQRLVYVSTYNVVFGGKEIVNG--NESLPYFPIDEHVDSYGRSKSVAEQLV--- 169
R ++ST + V+G + E+ PY P Y SK+ ++ LV
Sbjct: 120 TEDKKSAFRFHHIST-DEVYGDLHSTDDFFTETTPYAP----SSPYSASKASSDHLVRAW 174
Query: 170 LKSNGRPFKKNNRKCLYTCAVRPAAIYGPGE--ERHLPRIVSLAKLGLVPFKIGEPSVKT 227
L++ G P T + YGP E+ +P ++ A G G
Sbjct: 175 LRTYGLP----------TLITNCSNNYGPYHFPEKLIPLMILNALAGKSLPVYGNGQQIR 224
Query: 228 DWIYVDNLVLAL 239
DW+YV++ AL
Sbjct: 225 DWLYVEDHARAL 236
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 55/263 (20%), Positives = 108/263 (41%), Gaps = 56/263 (21%)
Query: 12 KTFLVTGGLGHVGS------------ALCLELVRRGAYQVRAFDLRT---NSPWSHLLIN 56
KT+L+TG G +GS + L+ G +Q +++T WS
Sbjct: 26 KTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTG-HQYNLDEVKTLVSTEQWSRFCF- 83
Query: 57 HGVHCIQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEAC 116
I+GD+ E+ +GVD V H A+ G + ++ + NI G +++ A
Sbjct: 84 -----IEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAA 138
Query: 117 LEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFP-IDEHVDS----YGRSKSVAE---QL 168
+Q Y ++ + +G P P ++E++ + Y +K V E Q+
Sbjct: 139 KNAQVQSFTYAAS-SSTYGDH---------PALPKVEENIGNPLSPYAVTKYVNEIYAQV 188
Query: 169 VLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH------LPRIVSLAKLGLVPFKIGE 222
++ G FK T +R ++G ++ + +P+ + G + G+
Sbjct: 189 YARTYG--FK--------TIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGD 238
Query: 223 PSVKTDWIYVDNLVLALILASMG 245
D+ Y+DN++ IL+++
Sbjct: 239 GETSRDFCYIDNVIQMNILSALA 261
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 55/263 (20%), Positives = 108/263 (41%), Gaps = 56/263 (21%)
Query: 12 KTFLVTGGLGHVGS------------ALCLELVRRGAYQVRAFDLRT---NSPWSHLLIN 56
KT+L+TG G +GS + L+ G +Q +++T WS
Sbjct: 26 KTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTG-HQYNLDEVKTLVSTEQWSRFCF- 83
Query: 57 HGVHCIQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEAC 116
I+GD+ E+ +GVD V H A+ G + ++ + NI G +++ A
Sbjct: 84 -----IEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAA 138
Query: 117 LEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFP-IDEHVDS----YGRSKSVAE---QL 168
+Q Y ++ + +G P P ++E++ + Y +K V E Q+
Sbjct: 139 KNAQVQSFTYAAS-SSTYGDH---------PALPKVEENIGNPLSPYAVTKYVNEIYAQV 188
Query: 169 VLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH------LPRIVSLAKLGLVPFKIGE 222
++ G FK T +R ++G ++ + +P+ + G + G+
Sbjct: 189 YARTYG--FK--------TIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGD 238
Query: 223 PSVKTDWIYVDNLVLALILASMG 245
D+ Y+DN++ IL+++
Sbjct: 239 GETSRDFCYIDNVIQMNILSALA 261
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 55/263 (20%), Positives = 108/263 (41%), Gaps = 56/263 (21%)
Query: 12 KTFLVTGGLGHVGS------------ALCLELVRRGAYQVRAFDLRT---NSPWSHLLIN 56
KT+L+TG G +GS + L+ G +Q +++T WS
Sbjct: 20 KTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTG-HQYNLDEVKTLVSTEQWSRFCF- 77
Query: 57 HGVHCIQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEAC 116
I+GD+ E+ +GVD V H A+ G + ++ + NI G +++ A
Sbjct: 78 -----IEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAA 132
Query: 117 LEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFP-IDEHVDS----YGRSKSVAE---QL 168
+Q Y ++ + +G P P ++E++ + Y +K V E Q+
Sbjct: 133 KNAQVQSFTYAAS-SSTYGDH---------PALPKVEENIGNPLSPYAVTKYVNEIYAQV 182
Query: 169 VLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH------LPRIVSLAKLGLVPFKIGE 222
++ G FK T +R ++G ++ + +P+ + G + G+
Sbjct: 183 YARTYG--FK--------TIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGD 232
Query: 223 PSVKTDWIYVDNLVLALILASMG 245
D+ Y+DN++ IL+++
Sbjct: 233 GETSRDFCYIDNVIQMNILSALA 255
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 98/253 (38%), Gaps = 21/253 (8%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRT---NSPWSHLLINHGVHCIQGDV 66
+GK VTG G G L L L GA V+ + L S + + G+ GD+
Sbjct: 8 QGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTAPTVPSLFETARVADGMQSEIGDI 66
Query: 67 VSKIDVEKAARGV--DCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRL 124
+ + ++ R + VFH+A+ + + N+ GT +++EA G +
Sbjct: 67 RDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKA 126
Query: 125 VYVSTYNVVFGGKEIVNG---NESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNN 181
V T + + KE + G NE++ + D Y SK AE + F N
Sbjct: 127 VVNITSDKCYDNKEWIWGYRENEAMGGY------DPYSNSKGCAELVTSSYRNSFFNPAN 180
Query: 182 --RKCLYTCAVRPAAIYGPGE---ERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLV 236
+ VR + G G+ +R +P I+ + P I P W +V +
Sbjct: 181 YGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQ-PVIIRNPHAIRPWQHVLEPL 239
Query: 237 LALILASMGLLDD 249
+L + L D
Sbjct: 240 SGYLLLAQKLYTD 252
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 55/263 (20%), Positives = 108/263 (41%), Gaps = 56/263 (21%)
Query: 12 KTFLVTGGLGHVGS------------ALCLELVRRGAYQVRAFDLRT---NSPWSHLLIN 56
KT+L+TG G +GS + L+ G +Q +++T WS
Sbjct: 39 KTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTG-HQYNLDEVKTLVSTEQWSRFCF- 96
Query: 57 HGVHCIQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEAC 116
I+GD+ E+ +GVD V H A+ G + ++ + NI G +++ A
Sbjct: 97 -----IEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAA 151
Query: 117 LEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFP-IDEHVDS----YGRSKSVAE---QL 168
+Q Y ++ + +G P P ++E++ + Y +K V E Q+
Sbjct: 152 KNAQVQSFTYAAS-SSTYGDH---------PALPKVEENIGNPLSPYAVTKYVNEIYAQV 201
Query: 169 VLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH------LPRIVSLAKLGLVPFKIGE 222
++ G FK T +R ++G ++ + +P+ + G + G+
Sbjct: 202 YARTYG--FK--------TIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGD 251
Query: 223 PSVKTDWIYVDNLVLALILASMG 245
D+ Y+DN++ IL+++
Sbjct: 252 GETSRDFCYIDNVIQMNILSALA 274
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 23/134 (17%)
Query: 9 IEGKTFLVTGGLGHVGSALCLELV-----------RRGAYQVRAFDLRTNSPWSHLLINH 57
++ +T L+TGG G G +++ R + + N P I
Sbjct: 19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFI-- 76
Query: 58 GVHCIQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVD--EVNINGTCHVIEA 115
GDV + A GVD H A+ + + ++ ++ + NI G +VI A
Sbjct: 77 ------GDVRDLERLNYALEGVDICIHAAA--LKHVPIAEYNPLECIKTNIMGASNVINA 128
Query: 116 CLEFGIQRLVYVST 129
CL+ I +++ +ST
Sbjct: 129 CLKNAISQVIALST 142
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 91/356 (25%), Positives = 130/356 (36%), Gaps = 53/356 (14%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFD---LRTNSPWSHLLINHGVHCIQGDVVS 68
K L+TGG G VGS L +L+ G ++V D H + + I DVV
Sbjct: 6 KRILITGGAGFVGSHLTDKLMMDG-HEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVE 64
Query: 69 KIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVS 128
+ +E VD ++H+AS M + + N GT +++ G RL+ S
Sbjct: 65 PLYIE-----VDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLAS 118
Query: 129 TYNVVFGGKEIVNGNESL--PYFPIDEHVDSYGRSKSVAEQLV---LKSNGRPFKKNNRK 183
T + V+G E+ +E PI Y K VAE + +K G
Sbjct: 119 T-SEVYGDPEVHPQSEDYWGHVNPIGPRA-CYDEGKRVAETMCYAYMKQEG--------- 167
Query: 184 CLYTCAVRPAAI---YGPGEERHLPRIVS---LAKLGLVPFKI-GEPSVKTDWIYVDNLV 236
VR A I +GP + R+VS L L P + G S + YV +LV
Sbjct: 168 ----VEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLV 223
Query: 237 LALILASMGLLDDIPGQKGRP-------IASGQPYFVSDGFPINTFEFIGPLLKTLDYDL 289
L+ A M P G P A V G I + D+
Sbjct: 224 NGLV-ALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDI 282
Query: 290 PKSWL------AVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTH 339
K+ L VP L K +F L N ++P+P PA + K H
Sbjct: 283 KKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANNQYIPKP--KPARIKKGRTRH 336
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 97/231 (41%), Gaps = 23/231 (9%)
Query: 14 FLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVE 73
L+TGG G +G L LV G DLR ++ G V +++ E
Sbjct: 10 ILITGGAGFIGGHLARALVASGEEVTVLDDLRV----PPMIPPEGTGKFLEKPVLELE-E 64
Query: 74 KAARGVDCVFHVASYGMSGKEMLQ-FGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNV 132
+ V V+H+AS+ + Q +D N++ H++ C G+ ++V ST
Sbjct: 65 RDLSDVRLVYHLASHKSVPRSFKQPLDYLD--NVDSGRHLLALCTSVGVPKVVVGSTCE- 121
Query: 133 VFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRP 192
V+G + + E P P Y SK V ++V ++ R VR
Sbjct: 122 VYGQADTLPTPEDSPLSP----RSPYAASK-VGLEMVAGAHQR-----ASVAPEVGIVRF 171
Query: 193 AAIYGPGEERH--LPRI-VSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALI 240
+YGPGE +PR+ +L +P + G+ + D+ Y+ ++V L+
Sbjct: 172 FNVYGPGERPDALVPRLCANLLTRNELPVE-GDGEQRRDFTYITDVVDKLV 221
>pdb|3TJR|A Chain A, Crystal Structure Of A Rv0851c Ortholog Short Chain
Dehydrogenase From Mycobacterium Paratuberculosis
pdb|3TJR|B Chain B, Crystal Structure Of A Rv0851c Ortholog Short Chain
Dehydrogenase From Mycobacterium Paratuberculosis
Length = 301
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 24/129 (18%)
Query: 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVR------AFDLRTNSPWSHLLINHGVHC 61
G +G+ +VTGG +G A E RRGA V A + N HGV C
Sbjct: 28 GFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVC 87
Query: 62 IQGDVVSKID-----VEKAAR---GVDCVFHVASYGMSGKEMLQFGRVD-----EVNING 108
V +D ++A R GVD VF A ++G + Q D ++++ G
Sbjct: 88 D----VRHLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGP-LAQMNHDDWRWVIDIDLWG 142
Query: 109 TCHVIEACL 117
+ H +EA L
Sbjct: 143 SIHAVEAFL 151
>pdb|3PVZ|A Chain A, Udp-N-Acetylglucosamine 4,6-Dehydratase From Vibrio
Fischeri
pdb|3PVZ|B Chain B, Udp-N-Acetylglucosamine 4,6-Dehydratase From Vibrio
Fischeri
pdb|3PVZ|C Chain C, Udp-N-Acetylglucosamine 4,6-Dehydratase From Vibrio
Fischeri
pdb|3PVZ|D Chain D, Udp-N-Acetylglucosamine 4,6-Dehydratase From Vibrio
Fischeri
Length = 399
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 12/128 (9%)
Query: 14 FLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLL-INHGVHCIQGDV------ 66
FLV GG G +G A+ E+ +R ++ D+ N+ + I I GD
Sbjct: 38 FLVLGGAGSIGQAVTKEIFKRNPQKLHVVDISENNXVELVRDIRSSFGYINGDFQTFALD 97
Query: 67 VSKIDVE---KAARGVDCVFHVAS--YGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGI 121
+ I+ + KA D V ++++ + S K+ R +VN+ T I+ ++ G
Sbjct: 98 IGSIEYDAFIKADGQYDYVLNLSALKHVRSEKDPFTLXRXIDVNVFNTDKTIQQSIDAGA 157
Query: 122 QRLVYVST 129
++ VST
Sbjct: 158 KKYFCVST 165
>pdb|1U7T|A Chain A, Crystal Structure Of AbadHSD10 WITH A BOUND INHIBITOR
pdb|1U7T|B Chain B, Crystal Structure Of AbadHSD10 WITH A BOUND INHIBITOR
pdb|1U7T|C Chain C, Crystal Structure Of AbadHSD10 WITH A BOUND INHIBITOR
pdb|1U7T|D Chain D, Crystal Structure Of AbadHSD10 WITH A BOUND INHIBITOR
Length = 261
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 66/151 (43%), Gaps = 29/151 (19%)
Query: 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCI--QGDV 66
++G ++TGG +G A LV +GA V DL NS G +C+ DV
Sbjct: 8 VKGLVAVITGGASGLGLATAERLVGQGASAV-LLDL-PNSGGEAQAKKLGNNCVFAPADV 65
Query: 67 VSKIDVEKA---ARG----VDCVFHVASYGMSGK----------EMLQFGRVDEVNINGT 109
S+ DV+ A A+G VD + A ++ K + F RV +VN+ GT
Sbjct: 66 TSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGT 125
Query: 110 CHVIEACL--------EFGIQRLVYVSTYNV 132
+VI + G QR V ++T +V
Sbjct: 126 FNVIRLVAGEMGQNEPDQGGQRGVIINTASV 156
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 32/178 (17%)
Query: 16 VTGGLGHVGSALCLELVRRGAYQV-----------RAFDLRTNSPWSHLLINHGVHCIQG 64
VTGG G +GS + L+ G Y V R TN P + + +H
Sbjct: 6 VTGGTGFLGSWIIKSLLENG-YSVNTTIRADPERKRDVSFLTNLPGA----SEKLHFFNA 60
Query: 65 DVVSKIDVEKAARGVDCVFHVAS---YGMSGKEMLQFGRVDEVNINGTCHVIEACLEF-G 120
D+ + A G +FH AS + +S E + R ++G +++AC+
Sbjct: 61 DLSNPDSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRT----VDGALGILKACVNSKT 116
Query: 121 IQRLVYVSTYNVV-FGGKEIVNGNESLPYFPID--EHVD----SYGRSKSVAEQLVLK 171
++R +Y S+ + V F GK+ +ES + +D V +Y SK++AE+ VL+
Sbjct: 117 VKRFIYTSSGSAVSFNGKDKDVLDES-DWSDVDLLRSVKPFGWNYAVSKTLAEKAVLE 173
>pdb|1BDB|A Chain A, Cis-Biphenyl-2,3-Dihydrodiol-2,3-Dehydrogenase From
Pseudomonas Sp. Lb400
Length = 277
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 25/144 (17%)
Query: 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHG--VHCIQGDV 66
++G+ L+TGG +G AL V GA +V D ++ + L +HG V I GDV
Sbjct: 3 LKGEAVLITGGASGLGRALVDRFVAEGA-KVAVLD-KSAERLAELETDHGDNVLGIVGDV 60
Query: 67 VSKIDVEKAAR-------GVDCVFHVA---SYGMSGKEMLQ------FGRVDEVNINGTC 110
S D ++AA +D + A Y + ++ + F V +N+ G
Sbjct: 61 RSLEDQKQAASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYI 120
Query: 111 HVIEACLEFGIQRLVYVSTYNVVF 134
H ++ACL + S NV+F
Sbjct: 121 HAVKACLP-----ALVASRGNVIF 139
>pdb|1SO8|A Chain A, Abeta-bound Human Abad Structure [also Known As
3-hydroxyacyl-coa Dehydrogenase Type Ii (type Ii Hadh),
Endoplasmic Reticulum- Associated Amyloid Beta-peptide
Binding Protein (erab)]
Length = 261
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 66/151 (43%), Gaps = 29/151 (19%)
Query: 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCI--QGDV 66
++G ++TGG +G A LV +GA V DL NS G +C+ DV
Sbjct: 8 VKGLVAVITGGASGLGLATAERLVGQGASAVL-LDL-PNSGGEAQAKKLGNNCVFAPADV 65
Query: 67 VSKIDVEKA---ARG----VDCVFHVASYGMSGK----------EMLQFGRVDEVNINGT 109
S+ DV+ A A+G VD + A ++ K + F RV +VN+ GT
Sbjct: 66 TSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGT 125
Query: 110 CHVIEACL--------EFGIQRLVYVSTYNV 132
+VI + G QR V ++T +V
Sbjct: 126 FNVIRLVAGEMGQNEPDQGGQRGVIINTASV 156
>pdb|2O23|A Chain A, The Structure Of Wild-Type Human Hadh2
(17beta-Hydroxysteroid Dehydrogenase Type 10) Bound To
Nad+ At 1.2 A
pdb|2O23|B Chain B, The Structure Of Wild-Type Human Hadh2
(17beta-Hydroxysteroid Dehydrogenase Type 10) Bound To
Nad+ At 1.2 A
Length = 265
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 66/151 (43%), Gaps = 29/151 (19%)
Query: 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCI--QGDV 66
++G ++TGG +G A LV +GA V DL NS G +C+ DV
Sbjct: 10 VKGLVAVITGGASGLGLATAERLVGQGASAVL-LDL-PNSGGEAQAKKLGNNCVFAPADV 67
Query: 67 VSKIDVEKA---ARG----VDCVFHVASYGMSGK----------EMLQFGRVDEVNINGT 109
S+ DV+ A A+G VD + A ++ K + F RV +VN+ GT
Sbjct: 68 TSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGT 127
Query: 110 CHVIEACL--------EFGIQRLVYVSTYNV 132
+VI + G QR V ++T +V
Sbjct: 128 FNVIRLVAGEMGQNEPDQGGQRGVIINTASV 158
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 13/65 (20%)
Query: 82 VFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVN 141
V H+ G+ G++ML+ G+++ V++ G+ +V +A E GI+ +E VN
Sbjct: 243 VVHIRENGIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIR-------------VRETVN 289
Query: 142 GNESL 146
N+SL
Sbjct: 290 INQSL 294
>pdb|3I3O|A Chain A, 2.06 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad-acetone
pdb|3I3O|B Chain B, 2.06 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad-acetone
pdb|3I3O|C Chain C, 2.06 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad-acetone
pdb|3I3O|D Chain D, 2.06 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad-acetone
pdb|3I3O|E Chain E, 2.06 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad-acetone
pdb|3I3O|F Chain F, 2.06 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad-acetone
pdb|3I3O|G Chain G, 2.06 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad-acetone
pdb|3I3O|H Chain H, 2.06 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad-acetone
Length = 291
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 21/157 (13%)
Query: 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAF-DLRTNSPWSHLLIN-HGVHCI- 62
+E ++GK L+TGG +G A+ + + GA A+ D ++ + + GV C+
Sbjct: 42 SEKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVL 101
Query: 63 -QGDVVS----KIDVEKAARGVDC----VFHVA-SYGMSGKEML---QFGRVDEVNINGT 109
GD+ K V++ R + V +VA Y G E + Q + +NI
Sbjct: 102 LPGDLSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSY 161
Query: 110 CHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESL 146
HV +A L Q V ++T ++V GNE+L
Sbjct: 162 FHVTKAALSHLKQGDVIINTASIV-----AYEGNETL 193
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 25/170 (14%)
Query: 13 TFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDV----VS 68
T LVTGG G++GS +EL+ G Y V D NS + + I G +
Sbjct: 7 TILVTGGAGYIGSHTAVELLAHG-YDVVIADNLVNSKREAIA---RIEKITGKTPAFHET 62
Query: 69 KIDVEKA------ARGVDCVFHVASYGMSGKEM---LQFGRVDEVNINGTCHVIEACLEF 119
+ E+A A + H A+ G+ + +++ R + ++ V+ E
Sbjct: 63 DVSDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMR---ER 119
Query: 120 GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLV 169
++R+V+ S+ V+G E +E+ P + YG++K +AEQ++
Sbjct: 120 AVKRIVF-SSSATVYGVPERSPIDETFPL----SATNPYGQTKLMAEQIL 164
>pdb|3TAC|B Chain B, Crystal Structure Of The Liprin-AlphaCASK COMPLEX
Length = 334
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 18/82 (21%)
Query: 370 QDRKRKSL-----DGPTIYAWLFCLIGLPALF---------ATAYLPDIGPVPILRTIGL 415
++ +RK L DGPT+ AWL +G+PA + + A + + I R IG+
Sbjct: 27 EEARRKGLPFAQWDGPTVVAWLELWLGMPAWYVAACRANVKSGAIMSALSDTEIQREIGI 86
Query: 416 FIFKSMWMMRLAFAIAVSAHVS 437
S + RL +A+ VS
Sbjct: 87 ----SNPLHRLKLRLAIQEMVS 104
>pdb|3IJR|A Chain A, 2.05 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad+
pdb|3IJR|B Chain B, 2.05 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad+
pdb|3IJR|C Chain C, 2.05 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad+
pdb|3IJR|D Chain D, 2.05 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad+
pdb|3IJR|E Chain E, 2.05 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad+
pdb|3IJR|F Chain F, 2.05 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad+
pdb|3IJR|G Chain G, 2.05 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad+
pdb|3IJR|H Chain H, 2.05 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad+
Length = 291
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 21/157 (13%)
Query: 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAF-DLRTNSPWSHLLIN-HGVHCI- 62
+E ++GK L+TGG +G A+ + + GA A+ D ++ + + GV C+
Sbjct: 42 SEKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVL 101
Query: 63 -QGDVVS----KIDVEKAARGVDC----VFHVA-SYGMSGKEML---QFGRVDEVNINGT 109
GD+ K V++ R + V +VA Y G E + Q + +NI
Sbjct: 102 LPGDLSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSY 161
Query: 110 CHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESL 146
HV +A L Q V ++T ++V GNE+L
Sbjct: 162 FHVTKAALSHLKQGDVIINTASIV-----AYEGNETL 193
>pdb|3TAD|A Chain A, Crystal Structure Of The Liprin-AlphaLIPRIN-Beta Complex
pdb|3TAD|B Chain B, Crystal Structure Of The Liprin-AlphaLIPRIN-Beta Complex
Length = 297
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 18/82 (21%)
Query: 370 QDRKRKSL-----DGPTIYAWLFCLIGLPALF---------ATAYLPDIGPVPILRTIGL 415
++ +RK L DGPT+ AWL +G+PA + + A + + I R IG+
Sbjct: 27 EEARRKGLPFAQWDGPTVVAWLELWLGMPAWYVAACRANVKSGAIMSALSDTEIQREIGI 86
Query: 416 FIFKSMWMMRLAFAIAVSAHVS 437
S + RL +A+ VS
Sbjct: 87 ----SNPLHRLKLRLAIQEMVS 104
>pdb|2Y93|A Chain A, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb)from Pandoraea Pnomenusa Strain
B-356.
pdb|2Y93|B Chain B, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb)from Pandoraea Pnomenusa Strain
B-356.
pdb|2Y99|A Chain A, Crystal Structure Of
Cis-Biphenyl-2,3-Dihydrodiol-2,3-Dehydrogenase
(Bphb)from Pandoraea Pnomenusa Strain B-356 Complex With
Co-Enzyme Nad
pdb|2Y99|B Chain B, Crystal Structure Of
Cis-Biphenyl-2,3-Dihydrodiol-2,3-Dehydrogenase
(Bphb)from Pandoraea Pnomenusa Strain B-356 Complex With
Co-Enzyme Nad
pdb|3ZV3|A Chain A, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb)from Pandoraea Pnomenusa Strain B-
356 In Intermediate State Of Substrate Binding Loop
pdb|3ZV3|B Chain B, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb)from Pandoraea Pnomenusa Strain B-
356 In Intermediate State Of Substrate Binding Loop
pdb|3ZV4|A Chain A, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 In Apo Form At 1.8 Angstrom
pdb|3ZV4|B Chain B, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 In Apo Form At 1.8 Angstrom
pdb|3ZV5|A Chain A, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 Complex With Co-Enzyme Nad And Product 2,3-
Dihydroxybiphenyl
pdb|3ZV5|B Chain B, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 Complex With Co-Enzyme Nad And Product 2,3-
Dihydroxybiphenyl
pdb|3ZV6|A Chain A, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 Complex With Co-Enzyme Nad And Product Analog 4,4'-
Dihydroxybiphenyl
pdb|3ZV6|B Chain B, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 Complex With Co-Enzyme Nad And Product Analog 4,4'-
Dihydroxybiphenyl
Length = 281
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 20/127 (15%)
Query: 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQ--GDV 66
+ G+ L+TGG +G AL V GA +V D ++ L + HG + + GDV
Sbjct: 3 LTGEVALITGGASGLGRALVDRFVAEGA-RVAVLD-KSAERLRELEVAHGGNAVGVVGDV 60
Query: 67 VSKIDVEKAAR-------GVDCVFHVA---SYGMSGKEMLQ------FGRVDEVNINGTC 110
S D ++AA +D + A Y + ++ + F + VN+ G
Sbjct: 61 RSLQDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYI 120
Query: 111 HVIEACL 117
H ++ACL
Sbjct: 121 HAVKACL 127
>pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|B Chain B, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|C Chain C, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|D Chain D, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
Length = 267
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 66/168 (39%), Gaps = 38/168 (22%)
Query: 14 FLVTGGLGHVGSALCLELVRRGAYQVRAFDL-RTNSPWSHLLINHGVHCIQGDVVSKIDV 72
LVTG G VGSA+ L A++VR D+ + +H I V C D+ V
Sbjct: 5 LLVTGAAGGVGSAIRPHLGTL-AHEVRLSDIVDLGAAEAHEEI---VAC---DLADAQAV 57
Query: 73 EKAARGVDCVFHVASYGMSG--KEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTY 130
+ D + H+ + ++LQ NI G ++ EA G R+V+ S+
Sbjct: 58 HDLVKDCDGIIHLGGVSVERPWNDILQ------ANIIGAYNLYEAARNLGKPRIVFASS- 110
Query: 131 NVVFGGKEIVNGNESLPYFPIDEHVDS---------YGRSKSVAEQLV 169
N ++ Y+P +D+ YG SK E L
Sbjct: 111 ------------NHTIGYYPRTTRIDTEVPRRPDSLYGLSKCFGEDLA 146
>pdb|3RIH|A Chain A, Crystal Structure Of A Putative Short Chain Dehydrogenase
Or Reductase From Mycobacterium Abscessus
pdb|3RIH|B Chain B, Crystal Structure Of A Putative Short Chain Dehydrogenase
Or Reductase From Mycobacterium Abscessus
pdb|3RIH|C Chain C, Crystal Structure Of A Putative Short Chain Dehydrogenase
Or Reductase From Mycobacterium Abscessus
pdb|3RIH|D Chain D, Crystal Structure Of A Putative Short Chain Dehydrogenase
Or Reductase From Mycobacterium Abscessus
Length = 293
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 50/124 (40%), Gaps = 15/124 (12%)
Query: 9 IEGKTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWSHLLINHGVHCIQG--- 64
+ ++ LVTGG +G + R GA V A R S + L G + G
Sbjct: 39 LSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRL 98
Query: 65 DVVSKIDVEKAARGVDCVFHV-----ASYGMSGKEML------QFGRVDEVNINGTCHVI 113
DV AAR V F A+ G+ + L Q V +VN+ GT + +
Sbjct: 99 DVSDPGSCADAARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTV 158
Query: 114 EACL 117
+ACL
Sbjct: 159 QACL 162
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 99/256 (38%), Gaps = 45/256 (17%)
Query: 14 FLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNS----PWSHLLINHGVHCIQGDVVSK 69
L+TGG G +GSA+ +++ V D T + S + ++ + D+
Sbjct: 3 ILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDS 62
Query: 70 IDVEKAARGV--DCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEF-------- 119
++ + D V H+A+ + + E NI GT ++E ++
Sbjct: 63 AEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDK 122
Query: 120 -GIQRLVYVSTYNVVFGG----KEIVNG------NESLPYFPIDEHVDSYGRSKSVAEQL 168
R ++ST + V+G E+ N E+ Y P Y SK+ ++ L
Sbjct: 123 KNNFRFHHIST-DEVYGDLPHPDEVENSVTLPLFTETTAYAP----SSPYSASKASSDHL 177
Query: 169 VLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPR----IVSLAKLGLVPFKI-GEP 223
V R +++ L T + YGP H P +V L L P I G+
Sbjct: 178 V-----RAWRRT--YGLPTIVTNCSNNYGP---YHFPEKLIPLVILNALEGKPLPIYGKG 227
Query: 224 SVKTDWIYVDNLVLAL 239
DW+YV++ AL
Sbjct: 228 DQIRDWLYVEDHARAL 243
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFD---LRTNSPWSHLLINHGVHCIQGDVVS 68
K L+TGG G VGS L +L G ++V D H + + I DVV
Sbjct: 28 KRILITGGAGFVGSHLTDKLXXDG-HEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVE 86
Query: 69 KIDVEKAARGVDCVFHVAS 87
+ +E VD ++H+AS
Sbjct: 87 PLYIE-----VDQIYHLAS 100
>pdb|3RGW|L Chain L, Crystal Structure At 1.5 A Resolution Of An H2-Reduced,
O2-Tolerant Hydrogenase From Ralstonia Eutropha Unmasks
A Novel Iron-Sulfur Cluster
Length = 603
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 313 LYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDE 349
L P++N +W + +LP E + VTHY L + E
Sbjct: 179 LGPFMNGYWGSKAYVLPPEANLMAVTHYLEALDLQKE 215
>pdb|3KGY|A Chain A, Crystal Structure Of Putative Dihydrofolate Reductase
(Yp_001636057.1) From Chloroflexus Aurantiacus J-10-Fl
At 1.50 A Resolution
pdb|3KGY|B Chain B, Crystal Structure Of Putative Dihydrofolate Reductase
(Yp_001636057.1) From Chloroflexus Aurantiacus J-10-Fl
At 1.50 A Resolution
Length = 231
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 103 EVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGG--KEIVNGNESLPYFPID 152
++ I+G +VI+ L G+ + ++ V+FGG + N +E LP F ID
Sbjct: 164 DIRISGGANVIQQYLNLGLVDELEIALIPVIFGGGRRLFENLHEPLPQFRID 215
>pdb|2Z1N|A Chain A, Crystal Structure Of Ape0912 From Aeropyrum Pernix K1
pdb|2Z1N|B Chain B, Crystal Structure Of Ape0912 From Aeropyrum Pernix K1
Length = 260
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAY-----QVRAFDLRTNSPWSHLLINHGVHCI 62
GI+GK +VT G +G A LEL R GA + R S + L+ V +
Sbjct: 4 GIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIV 63
Query: 63 QGDVVSKIDVEK 74
GD+ D+++
Sbjct: 64 AGDIREPGDIDR 75
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 12/101 (11%)
Query: 212 KLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIAS---GQPY---F 265
+LG++ G P+ + W+ ++ V LA GLLD + + GRP + G+P+
Sbjct: 93 RLGML-LADGHPAQQRAWLDLNGAVSHADLAFTGLLDVV--RTGRPAYAGRYGRPFWEDL 149
Query: 266 VSDGFPINTFEFIGPLLKTLDYDLPK---SWLAVPHALFLG 303
+D ++F+ + + L Y+ P W AV H L +G
Sbjct: 150 SADVALADSFDALMSCDEDLAYEAPADAYDWSAVRHVLDVG 190
>pdb|3T4X|A Chain A, Short Chain DehydrogenaseREDUCTASE FAMILY OXIDOREDUCTASE
FROM Bacillus Anthracis Str. Ames Ancestor
pdb|3T4X|B Chain B, Short Chain DehydrogenaseREDUCTASE FAMILY OXIDOREDUCTASE
FROM Bacillus Anthracis Str. Ames Ancestor
Length = 267
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 9 IEGKTFLVTGGLGHVGSALCLELVRRGA 36
++GKT LVTG +G A+ LV GA
Sbjct: 8 LKGKTALVTGSTAGIGKAIATSLVAEGA 35
>pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn
From Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr310
Length = 227
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 10/123 (8%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71
K ++ G G VGSAL E + RG ++V A P + N + + DV S +
Sbjct: 5 KKIVLIGASGFVGSALLNEALNRG-FEVTAV---VRHPEKIKIENEHLKVKKADVSSLDE 60
Query: 72 VEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131
V + +G D V + G + ++ DE I +I+ + G+ R + V
Sbjct: 61 VCEVCKGADAVISAFNPGWNNPDIY-----DET-IKVYLTIIDGVKKAGVNRFLXVGGAG 114
Query: 132 VVF 134
+F
Sbjct: 115 SLF 117
>pdb|2X4G|A Chain A, Crystal Structure Of Pa4631, A
Nucleoside-Diphosphate-Sugar Epimerase From Pseudomonas
Aeruginosa
Length = 342
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Query: 60 HCIQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEV--NINGTCHVIEACL 117
C +++ +E+A RG+D V A Y S Q +EV + T ACL
Sbjct: 59 ECRVAEMLDHAGLERALRGLDGVIFSAGYYPSRPRRWQ----EEVASALGQTNPFYAACL 114
Query: 118 EFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSY 158
+ + R++YV + + + + G+E L Y + SY
Sbjct: 115 QARVPRILYVGSAYAMPRHPQGLPGHEGLFYDSLPSGKSSY 155
>pdb|1DOH|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4-nitro-inden-1-one
pdb|1DOH|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4-nitro-inden-1-one
pdb|1G0N|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4,5,6,7-Tetrachloro-Phthalide
pdb|1G0N|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4,5,6,7-Tetrachloro-Phthalide
pdb|1G0O|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
pdb|1G0O|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
pdb|1G0O|C Chain C, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
pdb|1G0O|D Chain D, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
Length = 283
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 5 ENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNS 48
++ +EGK LVTG +G + +EL RRG + + T S
Sbjct: 23 QSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTES 66
>pdb|1YBV|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And An Active Site Inhibitor
pdb|1YBV|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And An Active Site Inhibitor
Length = 283
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 5 ENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNS 48
++ +EGK LVTG +G + +EL RRG + + T S
Sbjct: 23 QSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTES 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.142 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,992,762
Number of Sequences: 62578
Number of extensions: 654873
Number of successful extensions: 1938
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 1856
Number of HSP's gapped (non-prelim): 93
length of query: 478
length of database: 14,973,337
effective HSP length: 103
effective length of query: 375
effective length of database: 8,527,803
effective search space: 3197926125
effective search space used: 3197926125
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)