Query 011771
Match_columns 477
No_of_seqs 206 out of 420
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 14:59:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011771.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011771hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 99.9 2.2E-28 7.5E-33 194.7 7.3 61 255-316 2-62 (64)
2 2yus_A SWI/SNF-related matrix- 92.9 0.25 8.5E-06 40.1 6.7 49 257-311 15-63 (79)
3 2yum_A ZZZ3 protein, zinc fing 91.8 0.35 1.2E-05 37.9 6.1 56 257-315 5-63 (75)
4 2cu7_A KIAA1915 protein; nucle 91.2 0.64 2.2E-05 36.4 7.0 54 257-316 6-59 (72)
5 1x41_A Transcriptional adaptor 85.1 1.2 4.1E-05 33.7 4.7 51 257-312 5-55 (60)
6 2iw5_B Protein corest, REST co 83.9 1.6 5.5E-05 42.5 6.1 51 257-313 130-180 (235)
7 2cqq_A RSGI RUH-037, DNAJ homo 83.6 3.4 0.00011 33.0 6.9 48 261-314 9-59 (72)
8 2hzd_A Transcriptional enhance 81.4 1.1 3.6E-05 37.4 3.3 58 257-316 3-77 (82)
9 2xag_B REST corepressor 1; ami 81.1 2.5 8.4E-05 44.8 6.7 53 256-314 376-428 (482)
10 2elk_A SPCC24B10.08C protein; 78.3 3.2 0.00011 31.3 4.8 48 260-312 9-57 (58)
11 1ity_A TRF1; helix-turn-helix, 77.9 9.1 0.00031 29.4 7.5 54 256-312 6-59 (69)
12 2cqr_A RSGI RUH-043, DNAJ homo 77.2 7.5 0.00026 31.1 7.0 51 259-312 17-68 (73)
13 2d9a_A B-MYB, MYB-related prot 71.0 15 0.0005 27.4 6.9 50 256-310 4-53 (60)
14 1guu_A C-MYB, MYB proto-oncoge 69.4 14 0.00046 26.7 6.2 46 260-310 3-48 (52)
15 3sjm_A Telomeric repeat-bindin 69.3 14 0.00046 28.6 6.5 49 257-308 8-56 (64)
16 2eqr_A N-COR1, N-COR, nuclear 66.1 13 0.00044 28.2 5.7 47 255-307 7-53 (61)
17 2yqk_A Arginine-glutamic acid 65.5 13 0.00046 28.5 5.8 48 256-308 5-52 (63)
18 2dim_A Cell division cycle 5-l 65.0 23 0.00079 27.2 7.1 51 256-311 5-55 (70)
19 1gvd_A MYB proto-oncogene prot 60.6 23 0.00079 25.5 6.0 47 260-311 3-49 (52)
20 2cjj_A Radialis; plant develop 58.9 13 0.00045 31.1 5.0 49 262-313 10-59 (93)
21 2ba2_A D12_ORF131, hypothetica 57.8 23 0.00079 29.7 6.2 41 344-387 33-73 (85)
22 2kes_A Synphilin-1; synphillin 54.9 10 0.00035 28.5 3.2 23 354-376 15-41 (48)
23 1wgx_A KIAA1903 protein; MYB D 54.2 19 0.00066 29.1 5.0 46 262-310 10-56 (73)
24 1w0t_A Telomeric repeat bindin 50.3 56 0.0019 23.6 6.7 48 260-310 2-49 (53)
25 4eef_G F-HB80.4, designed hema 44.8 6.4 0.00022 32.3 0.9 44 262-308 22-66 (74)
26 2din_A Cell division cycle 5-l 44.3 60 0.002 24.5 6.3 55 257-318 6-60 (66)
27 2aje_A Telomere repeat-binding 40.9 73 0.0025 27.2 6.9 51 255-308 8-60 (105)
28 2da3_A Alpha-fetoprotein enhan 40.3 67 0.0023 24.7 6.1 61 255-318 16-76 (80)
29 2k9n_A MYB24; R2R3 domain, DNA 37.8 86 0.003 25.7 6.7 48 260-313 53-100 (107)
30 3osg_A MYB21; transcription-DN 36.3 82 0.0028 26.6 6.5 50 256-311 7-56 (126)
31 3ghg_A Fibrinogen alpha chain; 34.4 48 0.0016 35.8 5.6 43 344-387 110-153 (562)
32 1gv2_A C-MYB, MYB proto-oncoge 32.0 1.2E+02 0.0041 24.5 6.6 45 260-310 56-100 (105)
33 1x58_A Hypothetical protein 49 31.0 1.9E+02 0.0064 22.8 7.2 54 257-317 5-59 (62)
34 1gv2_A C-MYB, MYB proto-oncoge 30.1 1.1E+02 0.0037 24.8 6.0 46 260-310 4-49 (105)
35 1deq_A Fibrinogen (alpha chain 29.6 77 0.0026 32.9 6.1 39 344-382 113-152 (390)
36 2ltp_A Nuclear receptor corepr 35.7 11 0.00039 30.7 0.0 51 257-313 13-63 (89)
37 2crg_A Metastasis associated p 28.3 54 0.0018 25.7 3.7 49 256-309 4-52 (70)
38 3osg_A MYB21; transcription-DN 26.6 1.7E+02 0.0057 24.7 6.8 51 262-318 64-114 (126)
39 3zqc_A MYB3; transcription-DNA 25.9 1.4E+02 0.0048 25.3 6.3 47 262-314 56-102 (131)
40 2k9n_A MYB24; R2R3 domain, DNA 24.7 1.6E+02 0.0055 24.0 6.2 45 261-310 2-46 (107)
41 2roh_A RTBP1, telomere binding 22.4 2.4E+02 0.0083 24.6 7.1 54 255-314 26-81 (122)
42 2e1o_A Homeobox protein PRH; D 21.9 2.1E+02 0.0073 21.4 6.0 60 255-317 6-65 (70)
43 2li6_A SWI/SNF chromatin-remod 21.3 19 0.00066 30.5 -0.1 45 265-312 49-97 (116)
44 1h8a_C AMV V-MYB, MYB transfor 21.1 2.2E+02 0.0076 23.8 6.5 45 260-310 79-123 (128)
45 3ok8_A Brain-specific angiogen 20.9 1.5E+02 0.0051 28.5 5.9 41 343-383 71-120 (222)
46 2ckx_A NGTRF1, telomere bindin 20.4 2.3E+02 0.0078 23.0 6.2 46 262-310 2-49 (83)
47 1h8a_C AMV V-MYB, MYB transfor 20.3 2.5E+02 0.0087 23.4 6.7 48 258-310 25-72 (128)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.95 E-value=2.2e-28 Score=194.70 Aligned_cols=61 Identities=54% Similarity=0.822 Sum_probs=58.2
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhhhhcccC
Q 011771 255 APAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYR 316 (477)
Q Consensus 255 ~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl~~~r 316 (477)
+.+|+||+||+|||++||+||++|| .++||||+||++|+|+|||++||||||||||+...|
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 4689999999999999999999999 699999999999999999999999999999998765
No 2
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=92.93 E-value=0.25 Score=40.12 Aligned_cols=49 Identities=16% Similarity=0.125 Sum_probs=40.2
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhhh
Q 011771 257 AKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYR 311 (477)
Q Consensus 257 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYR 311 (477)
...+-.||+|=+.+|++||..+|+ .=+.|-++|+ +-|..+++.|.++|-
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v~--~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKD----DWNKVSEHVG--SRTQDECILHFLRLP 63 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHHS--SCCHHHHHHHHTTSC
T ss_pred cccCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHcC--CCCHHHHHHHHHHhc
Confidence 344678999999999999999994 2367777764 799999999999883
No 3
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.79 E-value=0.35 Score=37.95 Aligned_cols=56 Identities=18% Similarity=0.182 Sum_probs=41.9
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCCh---HHHHhhcCCCCCCHHHHHHHHhhhhhccc
Q 011771 257 AKPRMRWTPELHEAFVEAVNQLGGSERATP---KGVLKLMKVEGLTIYHVKSHLQKYRTARY 315 (477)
Q Consensus 257 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtP---K~IL~lM~v~gLT~~hVKSHLQKYRl~~~ 315 (477)
...+-.||+|=+++|++||..+|. +...| +.|-+. |+|-|..+|+.|.++|-....
T Consensus 5 ~~~~~~WT~eEd~~L~~~v~~~g~-~~~~~~~W~~IA~~--~~~Rt~~qcr~r~~~~l~~~~ 63 (75)
T 2yum_A 5 SSGNQLWTVEEQKKLEQLLIKYPP-EEVESRRWQKIADE--LGNRTAKQVASQVQKYFIKLT 63 (75)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHSCC-CSCHHHHHHHHHHH--HSSSCHHHHHHHHHHHHGGGS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CCCCcccHHHHHHH--hCCCCHHHHHHHHHHHHHHHH
Confidence 344558999999999999999992 32222 334444 478999999999999976544
No 4
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=91.16 E-value=0.64 Score=36.39 Aligned_cols=54 Identities=24% Similarity=0.391 Sum_probs=42.9
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhhhhcccC
Q 011771 257 AKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYR 316 (477)
Q Consensus 257 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl~~~r 316 (477)
...+-.||+|=++.|+++|.++|- .=+.|-++ ++|-|-.+||.|.++|-..+.+
T Consensus 6 ~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~--~~~Rt~~q~k~r~~~~l~~~~~ 59 (72)
T 2cu7_A 6 SGYSVKWTIEEKELFEQGLAKFGR----RWTKISKL--IGSRTVLQVKSYARQYFKNKVK 59 (72)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHH--HSSSCHHHHHHHHHHHHHHHSC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHHHHh
Confidence 455668999999999999999993 34566555 4789999999999998655433
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=85.15 E-value=1.2 Score=33.75 Aligned_cols=51 Identities=25% Similarity=0.244 Sum_probs=40.2
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhhhh
Q 011771 257 AKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 312 (477)
Q Consensus 257 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl 312 (477)
.-.|-.||+|=.+++++||.++| .. .=+.|-+.| +|-|-.+++.|-++|-.
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G-~~--~W~~Ia~~~--~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCG-FG--NWQDVANQM--CTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTC-TT--CHHHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC-cC--cHHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence 45566899999999999999999 11 235666666 68999999999988754
No 6
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=83.90 E-value=1.6 Score=42.48 Aligned_cols=51 Identities=24% Similarity=0.406 Sum_probs=42.9
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhhhhc
Q 011771 257 AKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTA 313 (477)
Q Consensus 257 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl~ 313 (477)
.+..-+||+|=++.|++|+...|- .=..|-++ |++=|..+||.|.++||..
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYGK----DW~~IAk~--VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYGR----DFQAISDV--IGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHSS----CHHHHHHH--HSSCCHHHHHHHHHHTTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 467789999999999999999992 25667666 5789999999999999853
No 7
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=83.60 E-value=3.4 Score=33.04 Aligned_cols=48 Identities=17% Similarity=0.355 Sum_probs=38.1
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCChHH---HHhhcCCCCCCHHHHHHHHhhhhhcc
Q 011771 261 MRWTPELHEAFVEAVNQLGGSERATPKG---VLKLMKVEGLTIYHVKSHLQKYRTAR 314 (477)
Q Consensus 261 lrWT~ELH~rFV~AV~qLGG~~kAtPK~---IL~lM~v~gLT~~hVKSHLQKYRl~~ 314 (477)
-.||.|=+.+|+.|+..+++ -||.+ |-+.| |-|..+|+.|-+++....
T Consensus 9 ~~WT~eE~k~fe~al~~~p~---~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 9 PEWTEEDLSQLTRSMVKFPG---GTPGRWEKIAHEL---GRSVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHH---TSCHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHHCCC---CCCcHHHHHHHHh---CCCHHHHHHHHHHHHHhc
Confidence 36999999999999999984 24554 44555 689999999988886553
No 8
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=81.39 E-value=1.1 Score=37.42 Aligned_cols=58 Identities=24% Similarity=0.330 Sum_probs=37.8
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHh---hc-C-------------CCCCCHHHHHHHHhhhhhcccC
Q 011771 257 AKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLK---LM-K-------------VEGLTIYHVKSHLQKYRTARYR 316 (477)
Q Consensus 257 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~---lM-~-------------v~gLT~~hVKSHLQKYRl~~~r 316 (477)
++..-+|.++|-..|++|+...-=....+ -+|. .| | -.--|..+|.||||.-|..+.+
T Consensus 3 ~~~e~vW~~~lE~aF~eaL~~yp~~g~~k--~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~~ 77 (82)
T 2hzd_A 3 NDAEGVWSPDIEQSFQEALSIYPPCGRRK--IILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSR 77 (82)
T ss_dssp GGGSCCSCHHHHHHHHHHHHHSCSSSCCC--CCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHTT
T ss_pred CCcCCcCCHHHHHHHHHHHHHcCCCCccc--eeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHhh
Confidence 45566899999999999998876211222 2221 11 1 1446888999999987765443
No 9
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=81.07 E-value=2.5 Score=44.83 Aligned_cols=53 Identities=23% Similarity=0.332 Sum_probs=43.8
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhhhhcc
Q 011771 256 PAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTAR 314 (477)
Q Consensus 256 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl~~ 314 (477)
..+..-+||+|=|..|++||.+.|- .=+.|-++++- =|..+|++|.++||...
T Consensus 376 ~~~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgT--KT~~Qvk~fy~~~kkr~ 428 (482)
T 2xag_B 376 IQKCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGN--KSVVQVKNFFVNYRRRF 428 (482)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSS--CCHHHHHHHHHHTTTTT
T ss_pred ccccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCC--CCHHHHHHHHHHHHHHh
Confidence 3466789999999999999999992 35677777654 69999999999999754
No 10
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=78.32 E-value=3.2 Score=31.30 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=37.0
Q ss_pred CccCCHHHHHHHHHHHHHhC-CCCCCChHHHHhhcCCCCCCHHHHHHHHhhhhh
Q 011771 260 RMRWTPELHEAFVEAVNQLG-GSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 312 (477)
Q Consensus 260 RlrWT~ELH~rFV~AV~qLG-G~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl 312 (477)
+-.||+|=++++++||.++| +- =+.|-+.|+. |-|..+++.|-++|-+
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~----W~~IA~~~~~-~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGN----WADIADYVGN-ARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTC----HHHHHHHHCS-SCCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCC----HHHHHHHHCC-CCCHHHHHHHHHHHcc
Confidence 44699999999999999999 32 3455555531 7899999999888743
No 11
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=77.86 E-value=9.1 Score=29.44 Aligned_cols=54 Identities=19% Similarity=0.220 Sum_probs=43.5
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhhhh
Q 011771 256 PAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 312 (477)
Q Consensus 256 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl 312 (477)
.++.|-.||+|=.++.+++|.++|. . .=+.|.+.|+..|-|-.+++.+-..|-.
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~G~-~--~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKYGE-G--NWSKILLHYKFNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHCS-S--CHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCC-C--cHHHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence 5788889999999999999999992 1 2367778886658999999988776643
No 12
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=77.17 E-value=7.5 Score=31.12 Aligned_cols=51 Identities=12% Similarity=0.108 Sum_probs=40.2
Q ss_pred CCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcC-CCCCCHHHHHHHHhhhhh
Q 011771 259 PRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMK-VEGLTIYHVKSHLQKYRT 312 (477)
Q Consensus 259 ~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~-v~gLT~~hVKSHLQKYRl 312 (477)
.+-.||.+=..+|++||..+|. -+|..--++-. |+|-|-.+|+.|.+.+..
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~---~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPR---GSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCS---SSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHcCC---CCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3446999999999999999992 27776544332 689999999999887754
No 13
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=70.96 E-value=15 Score=27.37 Aligned_cols=50 Identities=18% Similarity=0.192 Sum_probs=38.9
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhh
Q 011771 256 PAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKY 310 (477)
Q Consensus 256 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKY 310 (477)
+...|-.||+|=.++++++|.++|- . .=+.|-+.| +|-|-.+++.|-.+|
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~G~-~--~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQFGQ-Q--DWKFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHTCT-T--CHHHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-C--CHHHHHHHc--cCCCHHHHHHHHHHH
Confidence 4566779999999999999999992 1 225565554 689999999887766
No 14
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=69.44 E-value=14 Score=26.73 Aligned_cols=46 Identities=26% Similarity=0.287 Sum_probs=36.8
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhh
Q 011771 260 RMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKY 310 (477)
Q Consensus 260 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKY 310 (477)
|-.||+|=.++++++|.++|. ..=+.|-+.| +|-|-.+++.|-.+|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999993 2345666665 689999999887776
No 15
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=69.31 E-value=14 Score=28.60 Aligned_cols=49 Identities=18% Similarity=0.192 Sum_probs=38.0
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHh
Q 011771 257 AKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQ 308 (477)
Q Consensus 257 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQ 308 (477)
.+.|-.||+|=-++.+++|.++|. . .=+.|.+.+++.|-|-.+++-+-.
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~-~--~W~~Ia~~~~~~~Rt~~qcr~Rw~ 56 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGE-G--NWAAISKNYPFVNRTAVMIKDRWR 56 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCT-T--CHHHHHHHSCCSSCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHccCC-C--chHHHHhhcCCCCCCHHHHHHHHH
Confidence 345678999999999999999992 1 245788888888999999886543
No 16
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.15 E-value=13 Score=28.25 Aligned_cols=47 Identities=13% Similarity=0.020 Sum_probs=36.4
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHH
Q 011771 255 APAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHL 307 (477)
Q Consensus 255 ~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHL 307 (477)
..++..-.||+|=|+.|++|+.+.|- -=..|-++ +++-|..+|.-|-
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~gk----~w~~Ia~~--l~~rt~~~~v~~Y 53 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQHPK----NFGLIASY--LERKSVPDCVLYY 53 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHSTT----CHHHHHHH--CTTSCHHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCC----CHHHHHHH--cCCCCHHHHHHHH
Confidence 35677789999999999999999982 23556544 5789999987653
No 17
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.49 E-value=13 Score=28.48 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=34.8
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHh
Q 011771 256 PAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQ 308 (477)
Q Consensus 256 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQ 308 (477)
+...+-.||+|=|+.|.+|+.+.|= + =..|-+.| |+.-|..+|..+--
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGK-d---f~~I~~~~-v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGK-N---FFRIRKEL-LPNKETGELITFYY 52 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCS-C---HHHHHHHS-CTTSCHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCc-c---HHHHHHHH-cCCCcHHHHHHHHh
Confidence 4566679999999999999999992 2 34444321 56788888876553
No 18
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.03 E-value=23 Score=27.15 Aligned_cols=51 Identities=14% Similarity=0.153 Sum_probs=40.1
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhhh
Q 011771 256 PAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYR 311 (477)
Q Consensus 256 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYR 311 (477)
+...|=.||+|=.++++++|.++|- ..=+.|-+.|+ |-|-.+++-|-..|-
T Consensus 5 ~~~k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~--~Rt~~qcr~Rw~~~L 55 (70)
T 2dim_A 5 SSGKGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLH--RKSAKQCKARWYEWL 55 (70)
T ss_dssp SCSTTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHST--TCCHHHHHHHHHHTS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhc--CCCHHHHHHHHHHHc
Confidence 3566778999999999999999992 12366767764 899999998877763
No 19
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=60.64 E-value=23 Score=25.52 Aligned_cols=47 Identities=15% Similarity=0.223 Sum_probs=36.2
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhhh
Q 011771 260 RMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYR 311 (477)
Q Consensus 260 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYR 311 (477)
|-.||+|=.++++++|.++|. . .=..|-+.| +|-|-.+++.|-.+|-
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~-~--~W~~Ia~~~--~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGP-K--RWSVIAKHL--KGRIGKQCRERWHNHL 49 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCT-T--CHHHHHTTS--TTCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCc-C--hHHHHHHHc--CCCCHHHHHHHHHHHc
Confidence 447999999999999999992 1 124555554 6899999998887763
No 20
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=58.85 E-value=13 Score=31.06 Aligned_cols=49 Identities=27% Similarity=0.369 Sum_probs=37.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCChHHHHhhc-CCCCCCHHHHHHHHhhhhhc
Q 011771 262 RWTPELHEAFVEAVNQLGGSERATPKGVLKLM-KVEGLTIYHVKSHLQKYRTA 313 (477)
Q Consensus 262 rWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM-~v~gLT~~hVKSHLQKYRl~ 313 (477)
.||.|=...|++|+..+|. + +|.+--++- -|+|-|-.+|+.|.+++...
T Consensus 10 ~WT~eEd~~L~~al~~~~~-~--~~~rW~~IA~~vpGRT~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 10 PWSAKENKAFERALAVYDK-D--TPDRWANVARAVEGRTPEEVKKHYEILVED 59 (93)
T ss_dssp SCCHHHHHHHHHHHHHSCT-T--CTTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCC-C--CCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 5999999999999999982 2 554432222 25799999999999887543
No 21
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=57.85 E-value=23 Score=29.72 Aligned_cols=41 Identities=29% Similarity=0.348 Sum_probs=29.8
Q ss_pred ChHHHHHHHHHHhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 011771 344 EITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGKYLQMMFEKQ 387 (477)
Q Consensus 344 ~i~eALr~QmEvQkrLhEQLEvQR~LQlRIEaqgKyLq~mlek~ 387 (477)
.|.+.+..|=|-=+. |-|--+.||+-+.|||+-|+.||+.-
T Consensus 33 kie~~~~~QgEqI~~---qGeqIkeLq~eqkaQg~tl~lil~tL 73 (85)
T 2ba2_A 33 VVMESFAVQNQNIDA---QGEQIKELQVEQKAQGKTLQLILEAL 73 (85)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777766653333 44444899999999999999998865
No 22
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=54.91 E-value=10 Score=28.50 Aligned_cols=23 Identities=39% Similarity=0.549 Sum_probs=17.0
Q ss_pred HHhHhHHHH----HHHHHHHHHhHHHH
Q 011771 354 EVQKRLHEQ----LEIQRNLQLRIEEQ 376 (477)
Q Consensus 354 EvQkrLhEQ----LEvQR~LQlRIEaq 376 (477)
.+-|+|+|| +.+|.+||.-+|+|
T Consensus 15 kltkql~eqt~~rv~lq~qlq~lle~~ 41 (48)
T 2kes_A 15 KLTKQLKEQTVERVTLQNQLQQFLEAQ 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 566788888 45777777777776
No 23
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=54.16 E-value=19 Score=29.07 Aligned_cols=46 Identities=11% Similarity=0.095 Sum_probs=37.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCChHHHHhhc-CCCCCCHHHHHHHHhhh
Q 011771 262 RWTPELHEAFVEAVNQLGGSERATPKGVLKLM-KVEGLTIYHVKSHLQKY 310 (477)
Q Consensus 262 rWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM-~v~gLT~~hVKSHLQKY 310 (477)
.||.+=+.+|..|+..++ +.+|.+--++- -|+|-|.++|+.|-+..
T Consensus 10 ~WT~eE~k~fe~ALa~~~---~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLP---KHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp CCCHHHHHHHHHHHHHSC---SSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHCC---CCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 499999999999999987 34787665443 37899999999876655
No 24
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=50.30 E-value=56 Score=23.65 Aligned_cols=48 Identities=19% Similarity=0.203 Sum_probs=37.4
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhh
Q 011771 260 RMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKY 310 (477)
Q Consensus 260 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKY 310 (477)
|-.||+|=.+..+++|..+|. . .=+.|.+.|+..|-|-.+++.+-..|
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~-~--~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGE-G--NWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCT-T--CHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc-C--CHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 457999999999999999992 1 23677777765588999998766555
No 25
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=44.77 E-value=6.4 Score=32.27 Aligned_cols=44 Identities=30% Similarity=0.350 Sum_probs=35.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcC-CCCCCHHHHHHHHh
Q 011771 262 RWTPELHEAFVEAVNQLGGSERATPKGVLKLMK-VEGLTIYHVKSHLQ 308 (477)
Q Consensus 262 rWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~-v~gLT~~hVKSHLQ 308 (477)
.||.+=.+.|..|+..++ +-||.+--++-. |+|-|...|+.|-|
T Consensus 22 ~WT~eE~K~FE~ALa~yp---~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 22 PWKFSENIAFEIALSFTN---KDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp CCCTTHHHHHHHHTSSSC---SSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCHHHHHHHHHHHHHCC---CCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 499999999999998875 456776654433 78999999999865
No 26
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.31 E-value=60 Score=24.50 Aligned_cols=55 Identities=13% Similarity=0.209 Sum_probs=41.3
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhhhhcccCCC
Q 011771 257 AKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPD 318 (477)
Q Consensus 257 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl~~~r~~ 318 (477)
...+-.||+|=.++++++|..+|. .=..|-+++ |-|-.+|+.|.+.|-....+.+
T Consensus 6 ~~~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~~~---gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 6 SGKKTEWSREEEEKLLHLAKLMPT----QWRTIAPII---GRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHCTT----CHHHHHHHH---SSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCC----CHHHHhccc---CcCHHHHHHHHHHHhChHhcCC
Confidence 344567999999999999999993 335565644 6999999999998865544443
No 27
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=40.94 E-value=73 Score=27.17 Aligned_cols=51 Identities=22% Similarity=0.189 Sum_probs=40.1
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcC--CCCCCHHHHHHHHh
Q 011771 255 APAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMK--VEGLTIYHVKSHLQ 308 (477)
Q Consensus 255 ~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~--v~gLT~~hVKSHLQ 308 (477)
..++.|-.||+|=-+..+++|+++|. . .=+.|++.+. .+|-|--++|.+..
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~-g--~W~~I~~~~~~~f~~RT~v~lKdrWr 60 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGT-G--RWRDVKLCAFEDADHRTYVDLKDKWK 60 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCS-S--SHHHHHSSSSSSTTCCCHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-C--ChHHHHHHhccccCCCCHHHHHHHHH
Confidence 36889999999999999999999993 1 2347777653 48999999997543
No 28
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=40.28 E-value=67 Score=24.67 Aligned_cols=61 Identities=20% Similarity=0.153 Sum_probs=41.7
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhhhhcccCCC
Q 011771 255 APAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPD 318 (477)
Q Consensus 255 ~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl~~~r~~ 318 (477)
..++.|.++|++-- ..++++.... ...+...+.++...-|||..+|+-=+|.-|...++..
T Consensus 16 ~~rr~Rt~ft~~Ql-~~Le~~f~~~--~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 16 RDKRLRTTITPEQL-EILYQKYLLD--SNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCTTCCSSCCTTTH-HHHHHHHHHC--SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCHHHH-HHHHHHHHhc--CCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 46778888888633 3334444433 4556666666666678999999999998887766554
No 29
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=37.76 E-value=86 Score=25.69 Aligned_cols=48 Identities=10% Similarity=0.179 Sum_probs=37.8
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhhhhc
Q 011771 260 RMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTA 313 (477)
Q Consensus 260 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl~ 313 (477)
+-.||+|=...++++|.++|. .=..|-+.| +|-|-.+|+.|...+...
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYGP----KWNKISKFL--KNRSDNNIRNRWMMIARH 100 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhCc----CHHHHHHHC--CCCCHHHHHHHHHHHHhh
Confidence 347999999999999999993 234566655 799999999987765543
No 30
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=36.33 E-value=82 Score=26.63 Aligned_cols=50 Identities=22% Similarity=0.277 Sum_probs=39.5
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhhh
Q 011771 256 PAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYR 311 (477)
Q Consensus 256 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYR 311 (477)
.+..|-.||+|=.++.+++|.+.|. .=+.|-+.| +|-|..+++.+-..|-
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~--~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQHGS----DWKMIAATF--PNRNARQCRDRWKNYL 56 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTC--TTCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHhhhc
Confidence 4567788999999999999999994 356666655 5789988888776654
No 31
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=34.39 E-value=48 Score=35.82 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=25.0
Q ss_pred ChHHHHHHHH-HHhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 011771 344 EITEALRLQM-EVQKRLHEQLEIQRNLQLRIEEQGKYLQMMFEKQ 387 (477)
Q Consensus 344 ~i~eALr~Qm-EvQkrLhEQLEvQR~LQlRIEaqgKyLq~mlek~ 387 (477)
+|++-||.++ .++.+|..||..-|.||=.|++|-.-||+ ||.+
T Consensus 110 E~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQR-LEvD 153 (562)
T 3ghg_A 110 RVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKR-LEVD 153 (562)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 5555555444 46666666666566666666666665555 4433
No 32
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=32.01 E-value=1.2e+02 Score=24.50 Aligned_cols=45 Identities=29% Similarity=0.412 Sum_probs=35.4
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhh
Q 011771 260 RMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKY 310 (477)
Q Consensus 260 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKY 310 (477)
+-.||+|=...++++|.++|. + =..|-+. ++|-|-.+|+.|...+
T Consensus 56 ~~~Wt~eEd~~L~~~~~~~G~--~--W~~Ia~~--l~gRt~~~~k~rw~~~ 100 (105)
T 1gv2_A 56 KTSWTEEEDRIIYQAHKRLGN--R--WAEIAKL--LPGRTDNAIKNHWNST 100 (105)
T ss_dssp CCCCCHHHHHHHHHHHHHHSS--C--HHHHHTT--CTTCCHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhCC--C--HHHHHHH--cCCCCHHHHHHHHHHH
Confidence 447999999999999999993 1 2455554 5899999999986544
No 33
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=31.03 E-value=1.9e+02 Score=22.84 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=42.9
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcC-CCCCCHHHHHHHHhhhhhcccCC
Q 011771 257 AKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMK-VEGLTIYHVKSHLQKYRTARYRP 317 (477)
Q Consensus 257 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~-v~gLT~~hVKSHLQKYRl~~~r~ 317 (477)
.+.|-.||+|=-+.-++.|.++|- .=+.|+.--. .+|-|--.||. |||.-.+++
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~----~W~~I~~~y~f~~~RT~VdLKd---k~r~L~k~~ 59 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN----HWNSILWSFPFQKGRRAVDLAH---KYHRLISGP 59 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS----CHHHHHHHSCCCTTCCHHHHHH---HHHHHHTCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH----hHHHHHHhCCCccCcccchHHH---HHHHHHhcc
Confidence 467889999999999999999992 4678886434 57899999995 788765554
No 34
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=30.11 E-value=1.1e+02 Score=24.75 Aligned_cols=46 Identities=15% Similarity=0.230 Sum_probs=35.9
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhh
Q 011771 260 RMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKY 310 (477)
Q Consensus 260 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKY 310 (477)
+-.||+|=.++++++|+..|. . .=+.|-+.| +|-|..+++.|-.+|
T Consensus 4 k~~WT~eED~~L~~~v~~~g~-~--~W~~Ia~~l--~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGP-K--RWSVIAKHL--KGRIGKQCRERWHNH 49 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCT-T--CHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCC-C--cHHHHhhhh--cCCCHHHHHHHHHhc
Confidence 447999999999999999994 1 234566665 689999999877665
No 35
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=29.60 E-value=77 Score=32.93 Aligned_cols=39 Identities=23% Similarity=0.309 Sum_probs=31.2
Q ss_pred ChHHHHHHHH-HHhHhHHHHHHHHHHHHHhHHHHHHHHHH
Q 011771 344 EITEALRLQM-EVQKRLHEQLEIQRNLQLRIEEQGKYLQM 382 (477)
Q Consensus 344 ~i~eALr~Qm-EvQkrLhEQLEvQR~LQlRIEaqgKyLq~ 382 (477)
++++.|+.|+ .+|+++.+||.--|.||-.|+.|-.-+|+
T Consensus 113 e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqR 152 (390)
T 1deq_A 113 QINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKR 152 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 5677777776 58888999988888888888888777776
No 36
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=35.68 E-value=11 Score=30.67 Aligned_cols=51 Identities=16% Similarity=0.185 Sum_probs=38.4
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhhhhc
Q 011771 257 AKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTA 313 (477)
Q Consensus 257 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl~ 313 (477)
.-.+=.||+|=++.|+++|..+|- + =..|-+. ++|-|..+|+.|...|...
T Consensus 13 ~~~~~~WT~eEd~~l~~~~~~~G~--~--W~~IA~~--l~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 13 NLYFQGWTEEEMGTAKKGLLEHGR--N--WSAIARM--VGSKTVSQCKNFYFNYKKR 63 (89)
Confidence 445567999999999999999993 2 2344444 4789999999987776543
No 37
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=28.31 E-value=54 Score=25.67 Aligned_cols=49 Identities=10% Similarity=0.085 Sum_probs=35.9
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhh
Q 011771 256 PAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQK 309 (477)
Q Consensus 256 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQK 309 (477)
.++..-.||+|=|..|.+|+...|= + =..|-+. -|++-|..+|..+--.
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~yGK-d---f~~I~~~-~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEKYGK-D---FNDIRQD-FLPWKSLTSIIEYYYM 52 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHTCS-C---HHHHHHT-TCSSSCHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHhCc-c---HHHHHHH-HcCCCCHHHHHHHHHh
Confidence 3566778999999999999999992 2 3445431 1677888888776643
No 38
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=26.60 E-value=1.7e+02 Score=24.68 Aligned_cols=51 Identities=22% Similarity=0.288 Sum_probs=39.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhhhhcccCCC
Q 011771 262 RWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPD 318 (477)
Q Consensus 262 rWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl~~~r~~ 318 (477)
.||+|=.++++++|.++|. .=..|-+. ++|-|-.+|+.|...+......|.
T Consensus 64 ~WT~eEd~~L~~~v~~~G~----~W~~Ia~~--l~gRt~~~~k~rw~~l~~k~~~p~ 114 (126)
T 3osg_A 64 PWTAEEDALLVQKIQEYGR----QWAIIAKF--FPGRTDIHIKNRWVTISNKLGIPQ 114 (126)
T ss_dssp CCCHHHHHHHHHHHHHHCS----CHHHHHTT--STTCCHHHHHHHHHHHHHHTTC--
T ss_pred cCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHhcCCCC
Confidence 6999999999999999994 23556554 579999999999877765554443
No 39
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=25.95 E-value=1.4e+02 Score=25.28 Aligned_cols=47 Identities=28% Similarity=0.374 Sum_probs=37.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhhhhcc
Q 011771 262 RWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTAR 314 (477)
Q Consensus 262 rWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl~~ 314 (477)
.||+|=.+.++++|.++|+- =..|-+. ++|-|-.+|+.|...|-..+
T Consensus 56 ~Wt~eEd~~L~~~~~~~G~~----W~~Ia~~--l~gRt~~~~k~rw~~~l~~~ 102 (131)
T 3zqc_A 56 AWTPEEDETIFRNYLKLGSK----WSVIAKL--IPGRTDNAIKNRWNSSISKR 102 (131)
T ss_dssp CCCHHHHHHHHHHHHHSCSC----HHHHTTT--STTCCHHHHHHHHHHTTGGG
T ss_pred CCCHHHHHHHHHHHHHHCcC----HHHHHHH--cCCCCHHHHHHHHHHHHHHH
Confidence 69999999999999999952 3455554 47999999999877665443
No 40
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=24.66 E-value=1.6e+02 Score=24.02 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=34.1
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhh
Q 011771 261 MRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKY 310 (477)
Q Consensus 261 lrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKY 310 (477)
-.||+|=.++++++|...|. ..=+.|-+.| +|-|..++..+-.+|
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 46 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGA---KDWIRISQLM--ITRNPRQCRERWNNY 46 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCS---SCHHHHHHHT--TTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCC---CCHHHHhhhc--CCCCHHHHHHHHHHH
Confidence 47999999999999999994 1235566666 478888887765544
No 41
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=22.39 E-value=2.4e+02 Score=24.61 Aligned_cols=54 Identities=28% Similarity=0.242 Sum_probs=41.2
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhc--CCCCCCHHHHHHHHhhhhhcc
Q 011771 255 APAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLM--KVEGLTIYHVKSHLQKYRTAR 314 (477)
Q Consensus 255 ~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM--~v~gLT~~hVKSHLQKYRl~~ 314 (477)
..++.|-.||+|=-+..+++|+++|. . .=+.|++.+ ..+|-|--++|. |||...
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~-g--~W~~I~~~~~~~~~~RT~vdlKd---RWrnll 81 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGT-G--RWRDVKFRAFENVHHRTYVDLKD---KWKTLV 81 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSS-S--CHHHHHHHHHSSSCCCCHHHHHH---HHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCC-C--ChHHHHHHhccccCCCCHHHHHH---HHHHHH
Confidence 45788999999999999999999993 1 234677654 358999999996 455443
No 42
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=21.85 E-value=2.1e+02 Score=21.41 Aligned_cols=60 Identities=18% Similarity=0.195 Sum_probs=41.0
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhhhhcccCC
Q 011771 255 APAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRP 317 (477)
Q Consensus 255 ~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl~~~r~ 317 (477)
..++.|.++|.+-... ++.+.+.- ...+...+.++...-|||..+|+-=+|.-|...++.
T Consensus 6 ~~~r~R~~ft~~q~~~-Le~~F~~~--~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIE-LEKKFETQ--KYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRS 65 (70)
T ss_dssp CCCCCCCCCCHHHHHH-HHHHHHHC--SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHH-HHHHHHcC--CCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCC
Confidence 4578899999864433 33333332 456666677777778899999999999877654443
No 43
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=21.31 E-value=19 Score=30.53 Aligned_cols=45 Identities=16% Similarity=0.250 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCh----HHHHhhcCCCCCCHHHHHHHHhhhhh
Q 011771 265 PELHEAFVEAVNQLGGSERATP----KGVLKLMKVEGLTIYHVKSHLQKYRT 312 (477)
Q Consensus 265 ~ELH~rFV~AV~qLGG~~kAtP----K~IL~lM~v~gLT~~hVKSHLQKYRl 312 (477)
-+|+..|.. |..+||.++.+- +.|.+.|+++. ...++.|-.||=.
T Consensus 49 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~--~~~Lr~~Y~k~L~ 97 (116)
T 2li6_A 49 INLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILL 97 (116)
T ss_dssp CSTTHHHHH-HHHHTSHHHHHHTTCHHHHHHHHTSCC--TTHHHHHHHHHHS
T ss_pred ecHHHHHHH-HHHhcCHHHccccCcHHHHHHHhCCCh--HHHHHHHHHHHHH
Confidence 468888875 788999766543 46788999887 5778887777643
No 44
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=21.10 E-value=2.2e+02 Score=23.81 Aligned_cols=45 Identities=29% Similarity=0.378 Sum_probs=35.2
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhh
Q 011771 260 RMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKY 310 (477)
Q Consensus 260 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKY 310 (477)
+-.||+|=.+.++++|.++|. .=..|-+. ++|-|-.+||.|...+
T Consensus 79 ~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~--l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 79 KTSWTEEEDRIIYQAHKRLGN----RWAEIAKL--LPGRTDNAVKNHWNST 123 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHHCS----CHHHHGGG--STTCCHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHHHHHCc----CHHHHHHH--CCCCCHHHHHHHHHHH
Confidence 346999999999999999993 23456555 4799999999986543
No 45
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=20.94 E-value=1.5e+02 Score=28.46 Aligned_cols=41 Identities=15% Similarity=0.238 Sum_probs=32.9
Q ss_pred cChHHHHHHHHHHhHhHHHHHHH---------HHHHHHhHHHHHHHHHHH
Q 011771 343 IEITEALRLQMEVQKRLHEQLEI---------QRNLQLRIEEQGKYLQMM 383 (477)
Q Consensus 343 ~~i~eALr~QmEvQkrLhEQLEv---------QR~LQlRIEaqgKyLq~m 383 (477)
.+|.+||.---|+||+|..+||. -..|+.+||...||++..
T Consensus 71 keLG~vL~qis~~hR~i~~~le~~~k~f~~elI~pLE~k~e~D~k~i~~~ 120 (222)
T 3ok8_A 71 QILGEILVQMSDTQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDS 120 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778886666899999998874 468999999999999843
No 46
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=20.41 E-value=2.3e+02 Score=22.96 Aligned_cols=46 Identities=24% Similarity=0.203 Sum_probs=35.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcC--CCCCCHHHHHHHHhhh
Q 011771 262 RWTPELHEAFVEAVNQLGGSERATPKGVLKLMK--VEGLTIYHVKSHLQKY 310 (477)
Q Consensus 262 rWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~--v~gLT~~hVKSHLQKY 310 (477)
.||+|=.+..+++|+++|. . .=+.|++... ++|-|-.+||.+...+
T Consensus 2 ~WT~eEd~~L~~gv~k~G~-g--~W~~I~~~~~~~~~~RT~~~lKdrWrnl 49 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGT-G--RWRDVKMRAFDNADHRTYVDLKDKWKTL 49 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCS-S--CHHHHHHHHCTTCTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCC-C--CcHHHHHhhccccCCCCHHHHHHHHHHH
Confidence 5999999999999999993 1 2346766533 5899999999865444
No 47
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=20.34 E-value=2.5e+02 Score=23.43 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=36.4
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhh
Q 011771 258 KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKY 310 (477)
Q Consensus 258 K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKY 310 (477)
..+-.||+|=.++++++|..+|. . .=+.|-+.| +|-|..+++.|..+|
T Consensus 25 ~~k~~Wt~eED~~L~~~v~~~g~-~--~W~~Ia~~l--~~Rt~~qcr~Rw~~~ 72 (128)
T 1h8a_C 25 LNKGPWTKEEDQRVIEHVQKYGP-K--RWSDIAKHL--KGRIGKQCRERWHNH 72 (128)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCS-C--CHHHHHHHS--SSCCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCC-C--CHHHHHHHh--cCCcHHHHHHHHHHh
Confidence 34557999999999999999993 1 124565665 689999998876655
Done!