BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011773
(477 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q97QZ1|PEZT_STRPN Toxin PezT OS=Streptococcus pneumoniae serotype 4 (strain ATCC
BAA-334 / TIGR4) GN=pezT PE=1 SV=1
Length = 253
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 17/119 (14%)
Query: 169 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKG 228
S + P+ +L+GG GAGK+T+ + +K+ + G N V+++ D+F+ Y L +
Sbjct: 28 SSKQPIAILLGGQSGAGKTTIHR--IKQKEFQG---NIVIIDGDSFRSQHPHYLELQQEY 82
Query: 229 HHDDMLQTAELVHQSSTDAASSL---LVTALNEGR-DVIMDGTLSWVPFVEQTIAMARN 283
D + + + D A + LVT L+ R +++++GTL V ++T + +N
Sbjct: 83 GKDSV--------EYTKDFAGKMVESLVTKLSSLRYNLLIEGTLRTVDVPKKTAQLLKN 133
>sp|P0A4M2|ZTOX_STRAG Toxin zeta OS=Streptococcus agalactiae PE=3 SV=1
Length = 287
Score = 41.2 bits (95), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 12/142 (8%)
Query: 168 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK 227
L+ SP L+GG G+GK+++ I +E+ N V+++ D FK+ + L K
Sbjct: 28 LAVESPTAFLLGGQPGSGKTSLRSAISEET-----QGNVVIIDNDTFKQQHPNFDEL-VK 81
Query: 228 GHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGT--LSWVPFVEQTIAMARNVH 285
+ D+++ T+A S L ++G +++++GT + VP T+ A++
Sbjct: 82 LYEKDVVKYVTPYSNRMTEAIISRL---RDKGYNLVIEGTGRTTDVPIQTATMLQAKDYE 138
Query: 286 KSRYRMGVGYKVNEDGTVIENY 307
Y M V K+N IE Y
Sbjct: 139 TKMYVMAVP-KINSYLGTIERY 159
>sp|P0A4M1|ZTOX_ENTFL Toxin zeta OS=Enterococcus faecalis PE=3 SV=1
Length = 287
Score = 41.2 bits (95), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 12/142 (8%)
Query: 168 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK 227
L+ SP L+GG G+GK+++ I +E+ N V+++ D FK+ + L K
Sbjct: 28 LAVESPTAFLLGGQPGSGKTSLRSAISEET-----QGNVVIIDNDTFKQQHPNFDEL-VK 81
Query: 228 GHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGT--LSWVPFVEQTIAMARNVH 285
+ D+++ T+A S L ++G +++++GT + VP T+ A++
Sbjct: 82 LYEKDVVKYVTPYSNRMTEAIISRL---RDKGYNLVIEGTGRTTDVPIQTATMLQAKDYE 138
Query: 286 KSRYRMGVGYKVNEDGTVIENY 307
Y M V K+N IE Y
Sbjct: 139 TKMYVMAVP-KINSYLGTIERY 159
>sp|Q54944|ZTOX_STRPY Toxin zeta OS=Streptococcus pyogenes PE=1 SV=3
Length = 287
Score = 41.2 bits (95), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 12/138 (8%)
Query: 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHD 231
SP L+GG G+GK+++ I +E+ N +V++ D FK+ + L K +
Sbjct: 32 SPTAFLLGGQPGSGKTSLRSAIFEET-----QGNVIVIDNDTFKQQHPNFDEL-VKLYEK 85
Query: 232 DMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGT--LSWVPFVEQTIAMARNVHKSRY 289
D+++ T+A S L ++G +++++GT + VP T+ A+ Y
Sbjct: 86 DVVKHVTPYSNRMTEAIISRLS---DQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMY 142
Query: 290 RMGVGYKVNEDGTVIENY 307
M V K+N IE Y
Sbjct: 143 VMAVP-KINSYLGTIERY 159
>sp|Q93CM1|ZTOX_ENTHR Toxin zeta OS=Enterococcus hirae PE=3 SV=1
Length = 286
Score = 40.8 bits (94), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 12/138 (8%)
Query: 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHD 231
SP L+GG G+GK+++ I +E+ N +V++ D FK+ + L K +
Sbjct: 31 SPTAFLLGGQPGSGKTSLRSAIFEET-----QGNVIVIDNDTFKQQHPNFDEL-VKLYEK 84
Query: 232 DMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGT--LSWVPFVEQTIAMARNVHKSRY 289
D+++ T+A S L ++G +++++GT + VP T+ A+ Y
Sbjct: 85 DVVKHVTPYSNRMTEAIISRLS---DKGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMY 141
Query: 290 RMGVGYKVNEDGTVIENY 307
M V K+N IE Y
Sbjct: 142 VMAVP-KINSYLGTIERY 158
>sp|Q9KDD8|URK_BACHD Uridine kinase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM
18197 / FERM 7344 / JCM 9153 / C-125) GN=udk PE=3 SV=1
Length = 211
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 4/44 (9%)
Query: 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214
+ P+++ + GG G+GK+TV K+I F+ + V++E DA+
Sbjct: 3 KRPIIIGVAGGTGSGKTTVAKEI----FYQFNEKSIVLIEQDAY 42
>sp|Q182S8|KGUA_CLOD6 Guanylate kinase OS=Clostridium difficile (strain 630) GN=gmk PE=3
SV=1
Length = 205
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHH 230
+ +LL++ G GAGK T+ K+++KE+ + +A + E D + SK
Sbjct: 4 KKGLLLVVSGPSGAGKGTICKELLKENDTIKLSVSATTRKPRT-GEVDGVNYFFISKEKF 62
Query: 231 DDMLQTAEL-----VHQSSTDAASSLLVTALNEGRDVIMD 265
++M++ E ++ + + ++ L +G+DV+++
Sbjct: 63 EEMIEKGEFLEYAQIYDNFYGTPKAAIMECLEKGQDVLLE 102
>sp|P74214|SRP54_SYNY3 Signal recognition particle protein OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=ffh PE=3 SV=1
Length = 482
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 35/137 (25%)
Query: 52 KKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEK 111
KK +G +D I E KEA ++E R +L+ + +L + + + E+
Sbjct: 14 KKLRG-QDKISESNIKEA---------LQEVRRALLA------ADVNLQVVKGFIKDVEQ 57
Query: 112 KTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSER 171
K D I Q+F K+ V+ LV M GES+ VP A +E+
Sbjct: 58 KALGADVISGVNPGQQFIKI--------VYDELVNLM------GESN-----VPLAQAEQ 98
Query: 172 SPVLLLMGGGMGAGKST 188
+P ++LM G G GK+T
Sbjct: 99 APTVILMAGLQGTGKTT 115
>sp|Q55311|SRP54_SYNE7 Signal recognition particle protein OS=Synechococcus elongatus
(strain PCC 7942) GN=ffh PE=3 SV=1
Length = 485
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 16/79 (20%)
Query: 115 LKDFIMAATRKQRFEKVTKDLK-----MKRVFSTLVEEMKAIRREGESHCTDVMVPAALS 169
+K+FI K +V ++ +K V+ LV+ M GE+H VP A +
Sbjct: 48 VKEFIAQVQEKAVGTQVISGIRPDQQFIKVVYDELVQVM------GETH-----VPLAQA 96
Query: 170 ERSPVLLLMGGGMGAGKST 188
++P ++LM G GAGK+T
Sbjct: 97 AKAPTVILMAGLQGAGKTT 115
>sp|P35494|PMGI_TOBAC 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
OS=Nicotiana tabacum PE=2 SV=1
Length = 559
Score = 33.5 bits (75), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 21/119 (17%)
Query: 224 LSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN 283
LS G H + Q L+ ++ A + V AL +GRDV+ ++ ++ +E ++A R
Sbjct: 134 LSDGGVHSRLDQVQLLLKGAAKHGAKRIRVHALTDGRDVLDGSSVGFMETLENSLAQLR- 192
Query: 284 VHKSRYRMGVGYKVNEDGTVI-------ENYWEQVKEGEEDYQQKENRQVFSRKPYRIE 335
G+ +V G + EN W+ VK G + QV P++ +
Sbjct: 193 ------EKGIDAQVASGGGRMYVTMDRYENDWDVVKRGWD-------AQVLGEAPHKFK 238
>sp|Q245F2|IF6_TETTS Eukaryotic translation initiation factor 6 OS=Tetrahymena
thermophila (strain SB210) GN=EIF6 PE=1 SV=1
Length = 245
Score = 33.5 bits (75), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 28 VARQMGFDDTNECPQLCKLAYEYLKKSKGCEDNIYEYFSKEAEP 71
+AR+ F+++N+ CKL Y S G +N Y F E P
Sbjct: 1 MARRCQFENSNDIGVFCKLTSAYCLVSVGASENFYSVFESELVP 44
>sp|Q6G053|KGUA_BARQU Guanylate kinase OS=Bartonella quintana (strain Toulouse) GN=gmk
PE=3 SV=1
Length = 221
Score = 33.5 bits (75), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 170 ERSPVLLLMGGGMGAGKST----VLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALS 225
+R L ++ GAGKST +LKD E S E D F V +
Sbjct: 15 QRRGFLFILSSPSGAGKSTLSRLLLKDAQLERSVSVTTRQRRPSEVDGFHYHFVSKQEFE 74
Query: 226 SKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMD 265
K D+ ++ AE VH + + AL+ GRD++ D
Sbjct: 75 CKRDGDEFIEWAE-VHGNYYGTLRKSVENALSAGRDILFD 113
>sp|P0CJ79|ZN888_HUMAN Zinc finger protein 888 OS=Homo sapiens GN=ZNF888 PE=3 SV=1
Length = 500
Score = 33.5 bits (75), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 284 VHKSRYRMGVGYKVNEDGTVIENY-----WEQVKEGEEDYQQKENRQVFSRKPY 332
VHK+ + YK NE G V +V GE+ YQ KE +VFSRK Y
Sbjct: 182 VHKTIHTGEKPYKCNECGKVFNQQSNLARHHRVHTGEKPYQCKECDKVFSRKSY 235
>sp|O04499|PMG1_ARATH 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1
OS=Arabidopsis thaliana GN=PGM1 PE=2 SV=3
Length = 557
Score = 32.3 bits (72), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 29/149 (19%)
Query: 202 AATNAVVVEADAFK------ETDVIYRA--LSSKGHHDDMLQTAELVHQSSTDAASSLLV 253
A + + E + FK ET+ ++ LS G H + Q L+ S+ A + V
Sbjct: 103 ALASGKIFEGEGFKYVSESFETNTLHLVGLLSDGGVHSRLDQLQLLIKGSAERGAKRIRV 162
Query: 254 TALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVI-------EN 306
L +GRDV+ ++ +V +E + R GV ++ G + EN
Sbjct: 163 HILTDGRDVLDGSSVGFVETLEADLVALR-------ENGVDAQIASGGGRMYVTLDRYEN 215
Query: 307 YWEQVKEGEEDYQQKENRQVFSRKPYRIE 335
WE VK G + QV P++ +
Sbjct: 216 DWEVVKRGWD-------AQVLGEAPHKFK 237
>sp|Q42908|PMGI_MESCR 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
OS=Mesembryanthemum crystallinum GN=PGM1 PE=2 SV=1
Length = 559
Score = 32.3 bits (72), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 21/119 (17%)
Query: 224 LSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN 283
LS G H + Q L+ S+ A + V L +GRDV+ ++ +V +E +A R
Sbjct: 134 LSDGGVHSRLDQLQLLLKGSAERGAKRIRVHILTDGRDVLDGSSVGFVETLENDLAQLR- 192
Query: 284 VHKSRYRMGVGYKVNEDGTVI-------ENYWEQVKEGEEDYQQKENRQVFSRKPYRIE 335
GV ++ G + EN W VK G + QV PY+ +
Sbjct: 193 ------AKGVDAQIASGGGRMYVTMDRYENDWSVVKRGWD-------AQVLGEAPYKFK 238
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,418,481
Number of Sequences: 539616
Number of extensions: 7194250
Number of successful extensions: 24103
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 24100
Number of HSP's gapped (non-prelim): 29
length of query: 477
length of database: 191,569,459
effective HSP length: 121
effective length of query: 356
effective length of database: 126,275,923
effective search space: 44954228588
effective search space used: 44954228588
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)