Query 011773
Match_columns 477
No_of_seqs 298 out of 1620
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 05:04:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011773.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011773hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4185 Uncharacterized protei 99.9 2.1E-26 4.5E-31 212.9 15.6 172 172-411 1-173 (187)
2 PF06414 Zeta_toxin: Zeta toxi 99.9 3.3E-24 7.2E-29 203.0 15.8 172 169-394 11-190 (199)
3 PF13671 AAA_33: AAA domain; P 99.6 9.5E-15 2.1E-19 129.0 13.5 136 175-371 1-138 (143)
4 COG2074 2-phosphoglycerate kin 99.6 1.5E-14 3.3E-19 142.8 12.6 143 114-271 36-198 (299)
5 PHA02530 pseT polynucleotide k 99.6 9.8E-14 2.1E-18 138.2 16.6 144 172-377 1-144 (300)
6 PRK06762 hypothetical protein; 99.5 4.5E-13 9.7E-18 122.4 13.0 133 172-372 1-133 (166)
7 PRK04220 2-phosphoglycerate ki 99.4 1.9E-11 4.1E-16 124.3 18.5 164 98-275 19-206 (301)
8 TIGR01313 therm_gnt_kin carboh 99.4 2.8E-11 6E-16 110.3 16.3 147 176-393 1-147 (163)
9 TIGR01663 PNK-3'Pase polynucle 99.4 8E-12 1.7E-16 135.5 14.3 108 170-358 366-473 (526)
10 COG4639 Predicted kinase [Gene 99.3 2.2E-11 4.8E-16 113.0 12.2 132 172-372 1-132 (168)
11 cd02021 GntK Gluconate kinase 99.3 1E-10 2.2E-15 105.0 15.6 118 175-354 1-119 (150)
12 cd00227 CPT Chloramphenicol (C 99.3 4.8E-11 1E-15 110.7 12.4 127 173-354 2-132 (175)
13 PRK12339 2-phosphoglycerate ki 99.2 2.2E-10 4.8E-15 109.8 15.5 139 172-371 2-158 (197)
14 TIGR01359 UMP_CMP_kin_fam UMP- 99.2 4.4E-10 9.5E-15 104.0 16.8 159 175-393 1-168 (183)
15 TIGR03574 selen_PSTK L-seryl-t 99.2 1.1E-10 2.4E-15 114.3 13.5 133 175-374 1-133 (249)
16 PRK12337 2-phosphoglycerate ki 99.2 6.9E-10 1.5E-14 118.5 20.1 182 124-368 211-419 (475)
17 COG0645 Predicted kinase [Gene 99.2 2.3E-10 4.9E-15 107.4 13.4 123 173-355 1-126 (170)
18 COG0572 Udk Uridine kinase [Nu 99.2 5.5E-11 1.2E-15 115.8 8.8 169 171-384 6-186 (218)
19 PF07931 CPT: Chloramphenicol 99.1 3.8E-10 8.3E-15 106.6 11.1 127 174-355 2-132 (174)
20 PRK14527 adenylate kinase; Pro 99.1 2.9E-09 6.4E-14 100.1 13.7 147 171-377 4-157 (191)
21 PRK06696 uridine kinase; Valid 99.0 3.9E-09 8.5E-14 102.0 14.6 48 171-220 20-67 (223)
22 COG0237 CoaE Dephospho-CoA kin 99.0 9E-10 1.9E-14 106.3 9.6 151 172-372 1-165 (201)
23 PLN02200 adenylate kinase fami 99.0 1.4E-08 3E-13 99.8 17.4 46 162-214 32-77 (234)
24 cd02027 APSK Adenosine 5'-phos 99.0 3.3E-09 7.1E-14 96.8 12.0 115 175-351 1-115 (149)
25 PRK00081 coaE dephospho-CoA ki 99.0 1.4E-09 3.1E-14 103.2 9.5 34 173-214 2-35 (194)
26 PRK14531 adenylate kinase; Pro 99.0 1.9E-08 4.2E-13 94.2 16.8 35 173-214 2-36 (183)
27 KOG3354 Gluconate kinase [Carb 99.0 6.2E-09 1.3E-13 97.0 13.0 137 170-364 9-146 (191)
28 TIGR00455 apsK adenylylsulfate 99.0 6.7E-09 1.5E-13 96.9 13.4 94 170-277 15-108 (184)
29 PRK14532 adenylate kinase; Pro 99.0 2.4E-08 5.2E-13 93.2 16.2 33 175-214 2-34 (188)
30 TIGR01360 aden_kin_iso1 adenyl 99.0 2.3E-08 4.9E-13 92.3 15.6 34 174-214 4-37 (188)
31 PF01583 APS_kinase: Adenylyls 98.9 1.3E-08 2.8E-13 94.8 12.9 92 172-277 1-92 (156)
32 PRK12338 hypothetical protein; 98.9 1.9E-08 4.1E-13 103.3 15.2 132 171-359 2-156 (319)
33 COG1102 Cmk Cytidylate kinase 98.9 8.3E-09 1.8E-13 96.7 11.3 80 175-269 2-83 (179)
34 PRK14733 coaE dephospho-CoA ki 98.9 4.4E-09 9.5E-14 101.7 9.6 37 171-214 4-40 (204)
35 PRK01184 hypothetical protein; 98.9 6.1E-08 1.3E-12 90.2 16.5 33 174-214 2-34 (184)
36 COG4088 Predicted nucleotide k 98.9 1E-08 2.2E-13 99.7 11.3 140 175-378 3-143 (261)
37 PTZ00301 uridine kinase; Provi 98.9 4.8E-09 1E-13 101.7 8.5 146 174-362 4-157 (210)
38 COG3265 GntK Gluconate kinase 98.9 2.3E-08 5E-13 92.5 11.9 119 179-365 1-120 (161)
39 PF08433 KTI12: Chromatin asso 98.9 2.1E-08 4.4E-13 100.8 12.7 138 175-376 3-140 (270)
40 PRK05541 adenylylsulfate kinas 98.9 3E-08 6.4E-13 91.8 12.7 85 170-269 4-88 (176)
41 PRK14730 coaE dephospho-CoA ki 98.9 8.1E-09 1.8E-13 98.5 9.1 34 174-214 2-35 (195)
42 cd02020 CMPK Cytidine monophos 98.9 2.6E-08 5.6E-13 88.0 11.6 123 175-373 1-123 (147)
43 cd01428 ADK Adenylate kinase ( 98.8 1.4E-07 2.9E-12 87.7 16.4 32 176-214 2-33 (194)
44 TIGR02173 cyt_kin_arch cytidyl 98.8 3.3E-08 7.1E-13 89.9 11.8 33 175-214 2-34 (171)
45 PRK00889 adenylylsulfate kinas 98.8 6.2E-08 1.3E-12 89.6 13.3 90 171-274 2-91 (175)
46 PF01121 CoaE: Dephospho-CoA k 98.8 4.3E-09 9.2E-14 99.8 5.4 134 174-361 1-151 (180)
47 PRK06761 hypothetical protein; 98.8 2.4E-08 5.2E-13 101.0 10.9 148 173-397 3-151 (282)
48 cd02022 DPCK Dephospho-coenzym 98.8 2.2E-08 4.7E-13 93.7 9.6 32 175-214 1-32 (179)
49 PRK09270 nucleoside triphospha 98.8 3.8E-07 8.2E-12 88.6 18.5 68 132-216 7-75 (229)
50 PRK09825 idnK D-gluconate kina 98.8 9.8E-08 2.1E-12 89.7 13.7 37 173-216 3-39 (176)
51 PRK14732 coaE dephospho-CoA ki 98.8 1.8E-08 4E-13 96.4 8.8 33 175-215 1-33 (196)
52 PRK03846 adenylylsulfate kinas 98.8 7.7E-08 1.7E-12 91.3 12.9 95 170-279 21-116 (198)
53 PRK04182 cytidylate kinase; Pr 98.8 1.5E-07 3.3E-12 86.0 14.2 33 175-214 2-34 (180)
54 TIGR01351 adk adenylate kinase 98.8 1.6E-07 3.4E-12 89.9 14.4 32 176-214 2-33 (210)
55 COG0529 CysC Adenylylsulfate k 98.8 1.2E-07 2.5E-12 90.3 13.0 83 170-267 20-103 (197)
56 PRK14734 coaE dephospho-CoA ki 98.8 5.6E-08 1.2E-12 93.1 11.1 33 174-214 2-34 (200)
57 KOG3220 Similar to bacterial d 98.8 3E-08 6.4E-13 95.8 9.1 34 174-215 2-35 (225)
58 PRK06547 hypothetical protein; 98.7 1.5E-07 3.3E-12 88.4 13.1 38 170-214 12-49 (172)
59 PTZ00451 dephospho-CoA kinase; 98.7 5E-08 1.1E-12 96.8 10.3 34 174-214 2-35 (244)
60 PRK00279 adk adenylate kinase; 98.7 4.8E-07 1E-11 86.8 16.3 33 175-214 2-34 (215)
61 PLN02348 phosphoribulokinase 98.7 2.5E-07 5.4E-12 97.4 14.9 150 170-362 46-213 (395)
62 PRK04040 adenylate kinase; Pro 98.7 2.6E-07 5.5E-12 88.0 13.3 38 172-214 1-38 (188)
63 PRK07261 topology modulation p 98.7 1.1E-07 2.4E-12 88.7 10.6 105 175-360 2-107 (171)
64 PRK11545 gntK gluconate kinase 98.7 1.8E-07 4E-12 86.6 11.9 111 179-354 1-112 (163)
65 cd00464 SK Shikimate kinase (S 98.7 7.3E-07 1.6E-11 79.6 15.3 33 176-215 2-34 (154)
66 PF00485 PRK: Phosphoribulokin 98.7 2.8E-07 6.1E-12 87.1 13.2 147 175-362 1-157 (194)
67 PRK14731 coaE dephospho-CoA ki 98.7 4.5E-07 9.7E-12 87.2 14.5 36 171-214 3-38 (208)
68 PRK06217 hypothetical protein; 98.7 7.7E-08 1.7E-12 90.1 9.0 34 175-215 3-36 (183)
69 KOG3079 Uridylate kinase/adeny 98.7 2E-07 4.4E-12 88.9 11.6 150 170-374 5-155 (195)
70 PRK05506 bifunctional sulfate 98.7 1.7E-07 3.6E-12 104.0 12.7 94 170-277 457-550 (632)
71 PRK14530 adenylate kinase; Pro 98.7 7E-07 1.5E-11 85.7 15.1 33 175-214 5-37 (215)
72 PLN02422 dephospho-CoA kinase 98.7 1.4E-07 2.9E-12 93.1 10.4 33 174-214 2-34 (232)
73 TIGR00152 dephospho-CoA kinase 98.6 3.5E-07 7.6E-12 85.9 12.6 34 175-215 1-34 (188)
74 PRK05480 uridine/cytidine kina 98.6 2.8E-07 6.1E-12 87.7 11.9 40 171-214 4-43 (209)
75 PRK00131 aroK shikimate kinase 98.6 1.1E-06 2.3E-11 79.8 14.9 38 171-215 2-39 (175)
76 PRK14737 gmk guanylate kinase; 98.6 1.4E-07 2.9E-12 89.7 9.4 86 171-267 2-102 (186)
77 PRK05537 bifunctional sulfate 98.6 3.2E-07 6.9E-12 101.0 13.1 100 168-280 387-486 (568)
78 TIGR03575 selen_PSTK_euk L-ser 98.6 7.1E-07 1.5E-11 92.6 14.8 40 175-215 1-40 (340)
79 PRK15453 phosphoribulokinase; 98.6 1.2E-07 2.6E-12 96.1 8.9 44 171-216 3-46 (290)
80 PRK02496 adk adenylate kinase; 98.6 1.6E-06 3.4E-11 80.9 15.7 33 175-214 3-35 (184)
81 PRK08118 topology modulation p 98.6 2E-07 4.4E-12 86.8 9.6 33 175-214 3-35 (167)
82 PRK13946 shikimate kinase; Pro 98.6 1.1E-06 2.4E-11 82.5 14.7 37 171-214 8-44 (184)
83 PRK13947 shikimate kinase; Pro 98.6 2.1E-06 4.6E-11 78.6 16.1 33 176-215 4-36 (171)
84 PRK14528 adenylate kinase; Pro 98.6 6.3E-07 1.4E-11 84.7 12.9 42 336-377 111-153 (186)
85 PRK00625 shikimate kinase; Pro 98.6 1.6E-06 3.4E-11 81.7 14.8 34 175-215 2-35 (173)
86 PRK03839 putative kinase; Prov 98.6 2.9E-07 6.4E-12 85.4 9.7 33 175-214 2-34 (180)
87 COG0194 Gmk Guanylate kinase [ 98.6 2.1E-07 4.6E-12 88.9 8.7 86 172-268 3-102 (191)
88 PRK10078 ribose 1,5-bisphospho 98.5 7E-07 1.5E-11 83.8 11.7 25 173-197 2-26 (186)
89 cd02029 PRK_like Phosphoribulo 98.5 1.9E-07 4.2E-12 94.0 8.1 40 175-216 1-40 (277)
90 PTZ00322 6-phosphofructo-2-kin 98.5 1.8E-06 3.9E-11 96.5 16.4 162 171-382 213-375 (664)
91 PRK08233 hypothetical protein; 98.5 1.3E-06 2.7E-11 80.2 12.6 27 172-198 2-28 (182)
92 PRK07667 uridine kinase; Provi 98.5 8.3E-07 1.8E-11 84.2 11.5 42 171-214 15-56 (193)
93 PRK03731 aroL shikimate kinase 98.5 4.9E-06 1.1E-10 76.4 15.8 35 174-215 3-37 (171)
94 PRK08356 hypothetical protein; 98.5 5.1E-06 1.1E-10 78.7 16.1 32 174-213 6-37 (195)
95 PRK13948 shikimate kinase; Pro 98.5 2.6E-06 5.7E-11 81.0 13.7 39 170-215 7-45 (182)
96 cd02028 UMPK_like Uridine mono 98.5 5.6E-07 1.2E-11 84.7 8.9 144 175-362 1-149 (179)
97 PLN02318 phosphoribulokinase/u 98.5 6.1E-07 1.3E-11 98.7 10.4 141 171-362 63-207 (656)
98 TIGR03263 guanyl_kin guanylate 98.5 5.9E-07 1.3E-11 82.9 8.6 24 174-197 2-25 (180)
99 PLN02674 adenylate kinase 98.5 4.3E-06 9.3E-11 83.2 14.9 37 171-214 29-65 (244)
100 TIGR00017 cmk cytidylate kinas 98.4 3.3E-06 7.1E-11 82.2 13.8 36 172-214 1-36 (217)
101 cd01673 dNK Deoxyribonucleosid 98.4 5.2E-06 1.1E-10 77.7 14.3 24 175-198 1-24 (193)
102 PRK14738 gmk guanylate kinase; 98.4 8.9E-07 1.9E-11 84.9 9.4 88 170-268 10-112 (206)
103 cd02024 NRK1 Nicotinamide ribo 98.4 2.7E-07 5.8E-12 88.2 5.7 35 175-215 1-35 (187)
104 cd01672 TMPK Thymidine monopho 98.4 2.7E-05 5.8E-10 71.8 18.7 24 174-197 1-24 (200)
105 PRK07429 phosphoribulokinase; 98.4 3.1E-06 6.6E-11 87.4 13.3 42 170-215 5-46 (327)
106 TIGR00235 udk uridine kinase. 98.4 4.5E-06 9.8E-11 79.6 13.4 40 171-214 4-43 (207)
107 PF01591 6PF2K: 6-phosphofruct 98.4 1E-05 2.2E-10 79.6 16.0 104 170-281 9-118 (222)
108 PRK00698 tmk thymidylate kinas 98.4 3.2E-05 7E-10 72.4 18.9 26 172-197 2-27 (205)
109 PRK03333 coaE dephospho-CoA ki 98.4 1E-06 2.2E-11 92.9 9.4 33 174-214 2-34 (395)
110 PRK13973 thymidylate kinase; P 98.4 3.7E-05 8.1E-10 74.1 19.3 92 172-267 2-97 (213)
111 cd02025 PanK Pantothenate kina 98.4 3E-06 6.4E-11 82.5 11.1 41 175-215 1-41 (220)
112 TIGR00041 DTMP_kinase thymidyl 98.4 2.7E-05 5.9E-10 72.7 17.1 26 173-198 3-28 (195)
113 PRK05439 pantothenate kinase; 98.4 1.3E-05 2.8E-10 82.4 16.2 46 170-215 83-128 (311)
114 TIGR02322 phosphon_PhnN phosph 98.3 3.8E-06 8.2E-11 77.7 11.0 25 174-198 2-26 (179)
115 PRK00300 gmk guanylate kinase; 98.3 3E-06 6.4E-11 79.9 10.3 27 171-197 3-29 (205)
116 PRK13808 adenylate kinase; Pro 98.3 1.3E-05 2.8E-10 83.1 15.5 32 176-214 3-34 (333)
117 cd02023 UMPK Uridine monophosp 98.3 4E-06 8.8E-11 79.0 10.7 37 175-215 1-37 (198)
118 COG0703 AroK Shikimate kinase 98.3 1.4E-05 3E-10 75.8 14.0 35 175-216 4-38 (172)
119 PRK05057 aroK shikimate kinase 98.3 1.4E-05 2.9E-10 74.8 13.6 35 173-214 4-38 (172)
120 PTZ00088 adenylate kinase 1; P 98.3 8.9E-06 1.9E-10 80.0 12.7 36 172-214 5-40 (229)
121 cd02026 PRK Phosphoribulokinas 98.3 1.6E-05 3.4E-10 80.1 14.7 169 175-393 1-179 (273)
122 TIGR00554 panK_bact pantothena 98.3 1E-05 2.2E-10 82.3 13.0 47 170-216 59-105 (290)
123 cd02030 NDUO42 NADH:Ubiquinone 98.2 6.2E-05 1.3E-09 72.8 17.2 58 335-393 145-203 (219)
124 PF13207 AAA_17: AAA domain; P 98.2 7.8E-07 1.7E-11 76.6 3.4 33 175-214 1-33 (121)
125 smart00072 GuKc Guanylate kina 98.2 6.2E-06 1.3E-10 77.4 9.0 25 173-197 2-26 (184)
126 PRK00023 cmk cytidylate kinase 98.2 4.4E-05 9.6E-10 74.6 15.0 36 172-214 3-38 (225)
127 PRK13949 shikimate kinase; Pro 98.2 9.1E-05 2E-09 69.2 16.4 33 175-214 3-35 (169)
128 PRK14526 adenylate kinase; Pro 98.2 7.2E-05 1.6E-09 72.7 15.8 32 176-214 3-34 (211)
129 PF13238 AAA_18: AAA domain; P 98.2 2.6E-06 5.7E-11 73.1 5.0 22 176-197 1-22 (129)
130 PRK11860 bifunctional 3-phosph 98.1 4E-05 8.6E-10 85.9 15.4 64 130-214 413-476 (661)
131 PRK13477 bifunctional pantoate 98.1 5.9E-05 1.3E-09 82.3 16.2 37 171-214 282-318 (512)
132 PF00406 ADK: Adenylate kinase 98.1 4.1E-05 8.9E-10 69.2 12.6 30 178-214 1-30 (151)
133 PRK08154 anaerobic benzoate ca 98.1 5.3E-05 1.1E-09 77.3 14.7 37 171-214 131-167 (309)
134 PF00625 Guanylate_kin: Guanyl 98.0 1E-05 2.2E-10 75.7 6.8 85 172-267 1-101 (183)
135 PLN02459 probable adenylate ki 98.0 0.00018 3.9E-09 72.4 16.0 36 172-214 28-63 (261)
136 PRK13975 thymidylate kinase; P 98.0 0.00033 7.2E-09 65.4 16.0 27 172-198 1-27 (196)
137 PRK05416 glmZ(sRNA)-inactivati 98.0 0.00027 5.8E-09 72.0 16.0 25 172-196 5-29 (288)
138 PF02223 Thymidylate_kin: Thym 97.9 0.001 2.3E-08 61.9 18.0 56 336-394 122-177 (186)
139 COG0563 Adk Adenylate kinase a 97.9 4.6E-05 9.9E-10 72.3 8.9 32 176-214 3-34 (178)
140 COG1428 Deoxynucleoside kinase 97.9 0.0004 8.6E-09 68.0 15.5 26 173-198 4-29 (216)
141 COG1072 CoaA Panthothenate kin 97.9 0.00026 5.6E-09 71.7 14.4 155 170-361 79-239 (283)
142 PRK13951 bifunctional shikimat 97.9 0.00031 6.7E-09 76.4 16.1 34 175-215 2-35 (488)
143 PRK00091 miaA tRNA delta(2)-is 97.9 3.6E-05 7.8E-10 79.0 8.5 84 171-265 2-99 (307)
144 COG0283 Cmk Cytidylate kinase 97.9 0.00016 3.5E-09 70.9 12.5 35 173-214 4-38 (222)
145 COG3896 Chloramphenicol 3-O-ph 97.9 8.4E-05 1.8E-09 70.1 10.1 132 170-355 20-162 (205)
146 PF01202 SKI: Shikimate kinase 97.9 0.00038 8.2E-09 63.9 14.4 27 182-215 1-27 (158)
147 PRK14529 adenylate kinase; Pro 97.9 0.00014 3.1E-09 71.4 12.2 32 176-214 3-34 (223)
148 PRK09518 bifunctional cytidyla 97.9 0.00022 4.7E-09 80.6 14.7 33 175-214 3-35 (712)
149 PLN02772 guanylate kinase 97.9 0.0002 4.3E-09 75.9 13.3 85 172-267 134-234 (398)
150 COG0125 Tmk Thymidylate kinase 97.8 0.0014 3E-08 63.9 16.7 91 172-265 2-94 (208)
151 PRK14021 bifunctional shikimat 97.7 0.00089 1.9E-08 73.6 16.7 35 174-215 7-41 (542)
152 PRK07933 thymidylate kinase; V 97.7 0.0019 4.1E-08 62.6 17.0 25 174-198 1-25 (213)
153 PRK13974 thymidylate kinase; P 97.7 0.0037 8E-08 60.2 19.0 26 173-198 3-28 (212)
154 PLN02199 shikimate kinase 97.7 0.0011 2.3E-08 68.1 15.8 36 173-215 102-137 (303)
155 PLN02924 thymidylate kinase 97.7 0.0016 3.5E-08 63.7 16.2 29 170-198 13-41 (220)
156 TIGR00064 ftsY signal recognit 97.7 0.00044 9.5E-09 69.7 12.3 45 170-216 69-113 (272)
157 PLN02842 nucleotide kinase 97.5 0.0019 4.1E-08 70.5 14.8 31 177-214 1-31 (505)
158 KOG0635 Adenosine 5'-phosphosu 97.5 0.00062 1.3E-08 64.0 9.5 44 170-215 28-71 (207)
159 PLN02840 tRNA dimethylallyltra 97.5 0.00029 6.2E-09 75.3 7.7 46 162-214 10-55 (421)
160 PLN02165 adenylate isopentenyl 97.5 0.00027 5.8E-09 73.4 7.2 37 171-214 41-77 (334)
161 PF00004 AAA: ATPase family as 97.4 0.00055 1.2E-08 58.9 7.9 34 176-214 1-34 (132)
162 PF03668 ATP_bind_2: P-loop AT 97.4 0.0043 9.3E-08 63.3 15.0 62 328-395 77-141 (284)
163 smart00382 AAA ATPases associa 97.4 0.00022 4.8E-09 59.8 4.5 42 173-216 2-43 (148)
164 cd00071 GMPK Guanosine monopho 97.4 9.2E-05 2E-09 66.8 2.1 23 175-197 1-23 (137)
165 PRK10867 signal recognition pa 97.4 0.00094 2E-08 71.7 10.0 46 170-217 97-143 (433)
166 TIGR01425 SRP54_euk signal rec 97.3 0.0029 6.2E-08 68.0 13.2 45 170-216 97-141 (429)
167 cd03115 SRP The signal recogni 97.3 0.001 2.2E-08 61.3 8.3 40 175-216 2-41 (173)
168 TIGR00959 ffh signal recogniti 97.3 0.0025 5.5E-08 68.4 12.5 46 170-216 96-141 (428)
169 cd02019 NK Nucleoside/nucleoti 97.3 0.00031 6.7E-09 56.2 4.3 23 175-197 1-23 (69)
170 PRK13976 thymidylate kinase; P 97.2 0.018 3.8E-07 56.0 16.0 91 174-267 1-94 (209)
171 TIGR00174 miaA tRNA isopenteny 97.2 0.00053 1.1E-08 69.9 5.7 82 175-267 1-97 (287)
172 PRK10416 signal recognition pa 97.2 0.004 8.7E-08 64.3 12.1 44 170-215 111-154 (318)
173 PLN02748 tRNA dimethylallyltra 97.2 0.00087 1.9E-08 72.6 7.5 38 170-214 19-56 (468)
174 PF08303 tRNA_lig_kinase: tRNA 97.2 0.004 8.7E-08 58.9 10.8 78 176-284 2-80 (168)
175 PF00448 SRP54: SRP54-type pro 97.2 0.00049 1.1E-08 66.1 4.8 42 173-216 1-42 (196)
176 PRK09435 membrane ATPase/prote 97.1 0.00044 9.4E-09 71.8 4.3 53 160-214 43-95 (332)
177 cd01130 VirB11-like_ATPase Typ 97.1 0.003 6.6E-08 59.4 9.4 131 171-363 23-157 (186)
178 COG0541 Ffh Signal recognition 97.1 0.002 4.4E-08 68.8 8.7 92 170-267 97-191 (451)
179 PRK14974 cell division protein 97.1 0.002 4.3E-08 67.1 8.4 45 170-216 137-181 (336)
180 KOG3347 Predicted nucleotide k 97.0 0.0027 5.9E-08 59.6 8.2 34 175-215 9-42 (176)
181 COG2019 AdkA Archaeal adenylat 97.0 0.021 4.6E-07 54.5 13.9 36 173-214 4-39 (189)
182 PHA03132 thymidine kinase; Pro 97.0 0.024 5.1E-07 63.1 16.3 25 173-197 257-281 (580)
183 PRK12724 flagellar biosynthesi 96.9 0.0046 9.9E-08 66.4 10.0 45 171-216 221-265 (432)
184 KOG1384 tRNA delta(2)-isopente 96.9 0.0084 1.8E-07 62.2 11.5 140 172-355 6-160 (348)
185 PF03308 ArgK: ArgK protein; 96.9 0.00067 1.4E-08 68.3 3.4 128 161-296 17-155 (266)
186 COG1936 Predicted nucleotide k 96.9 0.0011 2.4E-08 63.1 4.6 23 175-198 2-24 (180)
187 smart00763 AAA_PrkA PrkA AAA d 96.9 0.0017 3.7E-08 68.2 6.3 45 140-198 59-103 (361)
188 TIGR00750 lao LAO/AO transport 96.9 0.0011 2.4E-08 67.4 4.6 53 160-214 21-73 (300)
189 PLN03046 D-glycerate 3-kinase; 96.9 0.0015 3.2E-08 70.1 5.6 44 170-215 209-252 (460)
190 PRK00771 signal recognition pa 96.8 0.0019 4.1E-08 69.5 6.3 44 171-216 93-136 (437)
191 PLN02796 D-glycerate 3-kinase 96.8 0.0016 3.4E-08 68.1 5.4 43 171-215 98-140 (347)
192 COG0324 MiaA tRNA delta(2)-iso 96.8 0.0027 5.8E-08 65.4 6.6 85 172-267 2-101 (308)
193 COG1703 ArgK Putative periplas 96.8 0.0011 2.4E-08 68.0 3.8 128 160-296 38-177 (323)
194 PF01745 IPT: Isopentenyl tran 96.7 0.013 2.8E-07 57.9 10.6 35 174-215 2-36 (233)
195 COG3709 Uncharacterized compon 96.7 0.012 2.5E-07 56.1 9.7 26 172-197 4-29 (192)
196 TIGR03499 FlhF flagellar biosy 96.7 0.0022 4.9E-08 64.7 5.0 45 171-215 192-236 (282)
197 PRK13768 GTPase; Provisional 96.6 0.0024 5.1E-08 63.5 5.0 41 172-214 1-41 (253)
198 cd01120 RecA-like_NTPases RecA 96.6 0.002 4.2E-08 56.7 4.0 38 175-214 1-38 (165)
199 TIGR00150 HI0065_YjeE ATPase, 96.6 0.0023 4.9E-08 58.4 4.4 28 172-199 21-48 (133)
200 cd01131 PilT Pilus retraction 96.6 0.0068 1.5E-07 57.9 7.9 23 175-197 3-25 (198)
201 cd00009 AAA The AAA+ (ATPases 96.6 0.0027 5.8E-08 54.0 4.6 41 172-214 18-58 (151)
202 PRK06995 flhF flagellar biosyn 96.6 0.0054 1.2E-07 66.8 7.8 45 171-215 254-298 (484)
203 COG0552 FtsY Signal recognitio 96.6 0.019 4E-07 59.9 11.2 90 170-265 136-227 (340)
204 PRK12723 flagellar biosynthesi 96.6 0.0063 1.4E-07 64.6 8.0 46 171-216 172-219 (388)
205 PRK11889 flhF flagellar biosyn 96.6 0.0027 5.7E-08 67.9 4.9 43 171-215 239-281 (436)
206 PRK14729 miaA tRNA delta(2)-is 96.5 0.002 4.3E-08 66.2 3.7 36 171-214 2-37 (300)
207 PF13555 AAA_29: P-loop contai 96.5 0.0022 4.8E-08 51.3 3.2 24 174-197 24-47 (62)
208 COG1126 GlnQ ABC-type polar am 96.5 0.0028 6.2E-08 62.6 4.5 51 161-214 16-66 (240)
209 TIGR00101 ureG urease accessor 96.5 0.0039 8.4E-08 59.9 5.4 40 173-215 1-40 (199)
210 PRK14723 flhF flagellar biosyn 96.5 0.033 7.1E-07 63.8 13.3 44 172-215 184-227 (767)
211 cd01394 radB RadB. The archaea 96.5 0.004 8.7E-08 59.5 5.2 42 171-214 17-58 (218)
212 PHA02544 44 clamp loader, smal 96.5 0.0053 1.1E-07 61.8 6.3 38 171-213 41-78 (316)
213 PRK05800 cobU adenosylcobinami 96.5 0.0028 6E-08 59.7 4.0 34 175-213 3-36 (170)
214 COG1120 FepC ABC-type cobalami 96.5 0.0035 7.6E-08 63.2 4.8 44 170-216 25-68 (258)
215 PF03029 ATP_bind_1: Conserved 96.4 0.0029 6.2E-08 62.7 3.9 35 178-214 1-35 (238)
216 PRK12269 bifunctional cytidyla 96.4 0.0024 5.2E-08 73.8 3.9 35 173-214 34-68 (863)
217 TIGR02237 recomb_radB DNA repa 96.4 0.0045 9.7E-08 58.6 5.1 42 171-214 10-51 (209)
218 KOG3877 NADH:ubiquinone oxidor 96.4 0.13 2.7E-06 53.0 15.4 41 170-214 68-108 (393)
219 cd03225 ABC_cobalt_CbiO_domain 96.3 0.0045 9.6E-08 58.8 4.7 41 171-214 25-65 (211)
220 cd01124 KaiC KaiC is a circadi 96.3 0.004 8.6E-08 57.3 4.2 38 175-214 1-38 (187)
221 TIGR01166 cbiO cobalt transpor 96.3 0.0044 9.5E-08 58.0 4.3 41 171-214 16-56 (190)
222 TIGR01618 phage_P_loop phage n 96.3 0.0029 6.2E-08 62.3 3.0 36 170-214 9-44 (220)
223 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.3 0.0045 9.8E-08 59.0 4.3 41 171-214 28-68 (218)
224 KOG3062 RNA polymerase II elon 96.3 0.014 3E-07 58.1 7.6 80 175-269 3-84 (281)
225 TIGR02673 FtsE cell division A 96.3 0.0049 1.1E-07 58.6 4.4 41 171-214 26-66 (214)
226 cd01918 HprK_C HprK/P, the bif 96.3 0.0046 9.9E-08 57.5 4.1 34 173-214 14-47 (149)
227 KOG3308 Uncharacterized protei 96.3 0.0047 1E-07 60.3 4.3 38 172-215 3-40 (225)
228 COG3839 MalK ABC-type sugar tr 96.3 0.0042 9.2E-08 64.8 4.2 45 170-217 26-70 (338)
229 cd03226 ABC_cobalt_CbiO_domain 96.3 0.0048 1E-07 58.5 4.3 41 171-214 24-64 (205)
230 cd03301 ABC_MalK_N The N-termi 96.3 0.005 1.1E-07 58.5 4.4 41 171-214 24-64 (213)
231 KOG0744 AAA+-type ATPase [Post 96.2 0.017 3.8E-07 60.2 8.5 26 173-198 177-202 (423)
232 cd03259 ABC_Carb_Solutes_like 96.2 0.0052 1.1E-07 58.5 4.5 41 171-214 24-64 (213)
233 PRK08099 bifunctional DNA-bind 96.2 0.014 3.1E-07 62.0 8.2 28 171-198 217-244 (399)
234 cd03263 ABC_subfamily_A The AB 96.2 0.0054 1.2E-07 58.5 4.6 41 171-214 26-66 (220)
235 cd03292 ABC_FtsE_transporter F 96.2 0.0051 1.1E-07 58.4 4.3 41 171-214 25-65 (214)
236 KOG2134 Polynucleotide kinase 96.2 0.011 2.5E-07 62.3 7.1 80 170-284 266-345 (422)
237 PRK10751 molybdopterin-guanine 96.2 0.0047 1E-07 58.7 4.0 27 171-197 4-30 (173)
238 PF13401 AAA_22: AAA domain; P 96.2 0.0036 7.9E-08 54.1 3.0 26 172-197 3-28 (131)
239 PF00005 ABC_tran: ABC transpo 96.2 0.0032 7E-08 55.2 2.7 41 172-215 10-50 (137)
240 TIGR03864 PQQ_ABC_ATP ABC tran 96.2 0.0052 1.1E-07 59.6 4.4 41 171-214 25-65 (236)
241 cd03261 ABC_Org_Solvent_Resist 96.2 0.0052 1.1E-07 59.5 4.4 41 171-214 24-64 (235)
242 cd03219 ABC_Mj1267_LivG_branch 96.2 0.0052 1.1E-07 59.3 4.3 41 171-214 24-64 (236)
243 TIGR03420 DnaA_homol_Hda DnaA 96.2 0.0044 9.5E-08 59.0 3.8 41 172-214 37-77 (226)
244 PF13173 AAA_14: AAA domain 96.2 0.0064 1.4E-07 53.7 4.5 40 173-215 2-41 (128)
245 PF13191 AAA_16: AAA ATPase do 96.2 0.0037 8.1E-08 56.9 3.1 28 170-197 21-48 (185)
246 cd03269 ABC_putative_ATPase Th 96.2 0.0058 1.3E-07 58.0 4.6 41 171-214 24-64 (210)
247 COG0396 sufC Cysteine desulfur 96.2 0.0046 1E-07 61.5 3.8 47 170-217 27-73 (251)
248 cd03224 ABC_TM1139_LivF_branch 96.2 0.0062 1.3E-07 58.1 4.6 41 171-214 24-64 (222)
249 TIGR02211 LolD_lipo_ex lipopro 96.2 0.0059 1.3E-07 58.3 4.5 41 171-214 29-69 (221)
250 cd03258 ABC_MetN_methionine_tr 96.2 0.0059 1.3E-07 58.9 4.5 41 171-214 29-69 (233)
251 TIGR02315 ABC_phnC phosphonate 96.2 0.0056 1.2E-07 59.3 4.4 41 171-214 26-66 (243)
252 PRK04296 thymidine kinase; Pro 96.2 0.0065 1.4E-07 57.7 4.7 37 173-211 2-38 (190)
253 PHA00729 NTP-binding motif con 96.2 0.004 8.7E-08 61.6 3.3 25 173-197 17-41 (226)
254 cd03262 ABC_HisP_GlnQ_permease 96.2 0.0062 1.3E-07 57.8 4.5 41 171-214 24-64 (213)
255 PF07728 AAA_5: AAA domain (dy 96.2 0.0059 1.3E-07 54.0 4.1 33 176-213 2-34 (139)
256 PRK10584 putative ABC transpor 96.2 0.006 1.3E-07 58.6 4.5 41 171-214 34-74 (228)
257 COG1660 Predicted P-loop-conta 96.2 0.059 1.3E-06 54.7 11.5 23 174-196 2-24 (286)
258 cd03260 ABC_PstB_phosphate_tra 96.2 0.0065 1.4E-07 58.4 4.7 44 171-214 24-69 (227)
259 cd03256 ABC_PhnC_transporter A 96.1 0.0061 1.3E-07 58.9 4.5 41 171-214 25-65 (241)
260 TIGR03410 urea_trans_UrtE urea 96.1 0.0062 1.3E-07 58.6 4.5 41 171-214 24-64 (230)
261 cd03257 ABC_NikE_OppD_transpor 96.1 0.0061 1.3E-07 58.3 4.4 41 171-214 29-69 (228)
262 cd00820 PEPCK_HprK Phosphoenol 96.1 0.0068 1.5E-07 53.4 4.3 34 172-214 14-47 (107)
263 cd03293 ABC_NrtD_SsuB_transpor 96.1 0.006 1.3E-07 58.4 4.3 40 171-213 28-67 (220)
264 cd03296 ABC_CysA_sulfate_impor 96.1 0.0061 1.3E-07 59.2 4.4 41 171-214 26-66 (239)
265 cd03218 ABC_YhbG The ABC trans 96.1 0.0066 1.4E-07 58.5 4.6 41 171-214 24-64 (232)
266 TIGR00960 3a0501s02 Type II (G 96.1 0.0061 1.3E-07 58.1 4.3 41 171-214 27-67 (216)
267 COG2805 PilT Tfp pilus assembl 96.1 0.039 8.5E-07 57.1 10.3 98 174-285 126-224 (353)
268 cd03235 ABC_Metallic_Cations A 96.1 0.006 1.3E-07 58.1 4.2 40 171-213 23-62 (213)
269 PF02367 UPF0079: Uncharacteri 96.1 0.006 1.3E-07 55.0 4.0 29 171-199 13-41 (123)
270 PRK14250 phosphate ABC transpo 96.1 0.0063 1.4E-07 59.4 4.4 41 171-214 27-67 (241)
271 PF05729 NACHT: NACHT domain 96.1 0.0044 9.5E-08 55.1 3.1 24 174-197 1-24 (166)
272 cd03229 ABC_Class3 This class 96.1 0.007 1.5E-07 56.4 4.5 41 171-214 24-64 (178)
273 cd00544 CobU Adenosylcobinamid 96.1 0.0062 1.3E-07 57.3 4.1 34 175-213 1-34 (169)
274 cd03265 ABC_DrrA DrrA is the A 96.1 0.0069 1.5E-07 58.0 4.5 41 171-214 24-64 (220)
275 PRK09361 radB DNA repair and r 96.1 0.0082 1.8E-07 57.7 5.1 42 171-214 21-62 (225)
276 PRK13538 cytochrome c biogenes 96.1 0.0071 1.5E-07 57.4 4.6 41 171-214 25-65 (204)
277 cd03251 ABCC_MsbA MsbA is an e 96.1 0.0068 1.5E-07 58.4 4.5 41 171-214 26-66 (234)
278 cd03264 ABC_drug_resistance_li 96.1 0.007 1.5E-07 57.5 4.5 39 172-214 25-63 (211)
279 PRK13541 cytochrome c biogenes 96.1 0.0078 1.7E-07 56.8 4.8 41 171-214 24-64 (195)
280 cd03295 ABC_OpuCA_Osmoprotecti 96.1 0.0069 1.5E-07 58.9 4.6 41 171-214 25-65 (242)
281 PF05496 RuvB_N: Holliday junc 96.1 0.011 2.3E-07 58.8 5.9 38 173-215 50-87 (233)
282 PRK14961 DNA polymerase III su 96.1 0.0088 1.9E-07 62.4 5.6 28 171-198 36-63 (363)
283 PRK04195 replication factor C 96.1 0.0081 1.8E-07 65.0 5.5 40 173-217 39-78 (482)
284 KOG1532 GTPase XAB1, interacts 96.1 0.028 6E-07 57.6 8.8 41 170-212 16-56 (366)
285 PF13521 AAA_28: AAA domain; P 96.1 0.0044 9.5E-08 56.6 2.9 21 176-196 2-22 (163)
286 PRK11629 lolD lipoprotein tran 96.1 0.0068 1.5E-07 58.7 4.4 41 171-214 33-73 (233)
287 cd03298 ABC_ThiQ_thiamine_tran 96.1 0.0071 1.5E-07 57.5 4.4 41 171-214 22-62 (211)
288 TIGR01189 ccmA heme ABC export 96.1 0.0076 1.6E-07 56.9 4.6 41 171-214 24-64 (198)
289 cd03247 ABCC_cytochrome_bd The 96.1 0.0074 1.6E-07 56.1 4.4 41 171-214 26-66 (178)
290 cd03268 ABC_BcrA_bacitracin_re 96.1 0.0079 1.7E-07 57.0 4.7 41 171-214 24-64 (208)
291 TIGR03015 pepcterm_ATPase puta 96.0 0.0051 1.1E-07 60.1 3.5 25 173-197 43-67 (269)
292 PF13476 AAA_23: AAA domain; P 96.0 0.0057 1.2E-07 56.1 3.6 27 172-198 18-44 (202)
293 TIGR01277 thiQ thiamine ABC tr 96.0 0.0072 1.6E-07 57.7 4.4 41 171-214 22-62 (213)
294 cd03238 ABC_UvrA The excision 96.0 0.0052 1.1E-07 58.2 3.3 26 170-195 18-43 (176)
295 cd03246 ABCC_Protease_Secretio 96.0 0.0088 1.9E-07 55.4 4.8 41 171-214 26-66 (173)
296 cd03252 ABCC_Hemolysin The ABC 96.0 0.0075 1.6E-07 58.3 4.5 41 171-214 26-66 (237)
297 cd03254 ABCC_Glucan_exporter_l 96.0 0.0075 1.6E-07 57.9 4.4 41 171-214 27-67 (229)
298 PRK10247 putative ABC transpor 96.0 0.0081 1.8E-07 58.0 4.7 41 171-214 31-71 (225)
299 PF13189 Cytidylate_kin2: Cyti 96.0 0.022 4.9E-07 53.5 7.5 34 175-215 1-34 (179)
300 cd03214 ABC_Iron-Siderophores_ 96.0 0.0085 1.8E-07 55.9 4.6 41 171-214 23-63 (180)
301 PRK13540 cytochrome c biogenes 96.0 0.0089 1.9E-07 56.6 4.7 41 171-214 25-65 (200)
302 COG1121 ZnuC ABC-type Mn/Zn tr 96.0 0.005 1.1E-07 61.9 3.1 50 162-214 19-68 (254)
303 TIGR03608 L_ocin_972_ABC putat 96.0 0.008 1.7E-07 56.7 4.4 40 171-213 22-61 (206)
304 PRK10771 thiQ thiamine transpo 96.0 0.0079 1.7E-07 58.2 4.5 41 171-214 23-63 (232)
305 TIGR01184 ntrCD nitrate transp 96.0 0.008 1.7E-07 58.3 4.5 41 171-214 9-49 (230)
306 PF13245 AAA_19: Part of AAA d 96.0 0.011 2.4E-07 48.6 4.6 25 173-197 10-34 (76)
307 cd03215 ABC_Carb_Monos_II This 96.0 0.0083 1.8E-07 56.0 4.4 41 171-214 24-64 (182)
308 PRK11264 putative amino-acid A 96.0 0.0082 1.8E-07 58.5 4.5 41 171-214 27-67 (250)
309 PRK12323 DNA polymerase III su 96.0 0.079 1.7E-06 59.9 12.6 54 124-199 11-64 (700)
310 PRK11300 livG leucine/isoleuci 96.0 0.0084 1.8E-07 58.6 4.5 41 171-214 29-69 (255)
311 cd03244 ABCC_MRP_domain2 Domai 96.0 0.0087 1.9E-07 57.2 4.6 41 171-214 28-68 (221)
312 PRK10895 lipopolysaccharide AB 96.0 0.0084 1.8E-07 58.2 4.5 41 171-214 27-67 (241)
313 cd03230 ABC_DR_subfamily_A Thi 96.0 0.0088 1.9E-07 55.4 4.4 41 171-214 24-64 (173)
314 PRK14722 flhF flagellar biosyn 96.0 0.0087 1.9E-07 63.3 4.9 44 171-215 135-179 (374)
315 cd03228 ABCC_MRP_Like The MRP 95.9 0.0095 2.1E-07 55.1 4.6 41 171-214 26-66 (171)
316 cd03283 ABC_MutS-like MutS-lik 95.9 0.0055 1.2E-07 58.8 3.1 23 173-195 25-47 (199)
317 cd03266 ABC_NatA_sodium_export 95.9 0.0086 1.9E-07 57.1 4.4 41 171-214 29-69 (218)
318 cd03297 ABC_ModC_molybdenum_tr 95.9 0.0089 1.9E-07 57.0 4.5 39 171-213 22-60 (214)
319 cd03248 ABCC_TAP TAP, the Tran 95.9 0.0093 2E-07 57.3 4.6 41 171-214 38-78 (226)
320 PRK05201 hslU ATP-dependent pr 95.9 0.017 3.6E-07 62.2 6.9 39 172-215 49-87 (443)
321 TIGR01420 pilT_fam pilus retra 95.9 0.02 4.4E-07 59.4 7.4 99 173-284 122-220 (343)
322 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.9 0.009 2E-07 57.8 4.5 41 171-214 27-67 (238)
323 COG2884 FtsE Predicted ATPase 95.9 0.011 2.4E-07 57.6 5.0 41 171-214 26-66 (223)
324 TIGR02655 circ_KaiC circadian 95.9 0.017 3.8E-07 62.6 7.1 43 171-215 261-303 (484)
325 PRK12726 flagellar biosynthesi 95.9 0.0097 2.1E-07 63.3 5.0 44 171-216 204-247 (407)
326 TIGR00635 ruvB Holliday juncti 95.9 0.025 5.3E-07 56.7 7.7 27 172-198 29-55 (305)
327 cd03253 ABCC_ATM1_transporter 95.9 0.0089 1.9E-07 57.7 4.4 41 171-214 25-65 (236)
328 PRK09493 glnQ glutamine ABC tr 95.9 0.0089 1.9E-07 58.0 4.4 41 171-214 25-65 (240)
329 cd03222 ABC_RNaseL_inhibitor T 95.9 0.0096 2.1E-07 56.4 4.5 38 171-211 23-60 (177)
330 PRK15177 Vi polysaccharide exp 95.9 0.0064 1.4E-07 58.6 3.3 27 171-197 11-37 (213)
331 PRK11124 artP arginine transpo 95.9 0.0095 2.1E-07 57.9 4.5 41 171-214 26-66 (242)
332 TIGR03005 ectoine_ehuA ectoine 95.9 0.0092 2E-07 58.4 4.4 41 171-214 24-64 (252)
333 PRK10575 iron-hydroxamate tran 95.9 0.0085 1.8E-07 59.4 4.2 41 171-214 35-75 (265)
334 cd03272 ABC_SMC3_euk Eukaryoti 95.9 0.0057 1.2E-07 59.3 2.9 23 173-195 23-45 (243)
335 cd03216 ABC_Carb_Monos_I This 95.9 0.0098 2.1E-07 54.8 4.3 41 171-214 24-64 (163)
336 PRK11701 phnK phosphonate C-P 95.9 0.01 2.2E-07 58.4 4.7 40 171-213 30-69 (258)
337 TIGR02770 nickel_nikD nickel i 95.9 0.0096 2.1E-07 57.6 4.4 41 171-214 10-54 (230)
338 COG3840 ThiQ ABC-type thiamine 95.8 0.0088 1.9E-07 58.1 4.0 46 171-219 23-68 (231)
339 PRK11248 tauB taurine transpor 95.8 0.0099 2.1E-07 58.8 4.6 40 171-213 25-64 (255)
340 cd01129 PulE-GspE PulE/GspE Th 95.8 0.016 3.6E-07 58.1 6.1 94 174-285 81-175 (264)
341 TIGR03878 thermo_KaiC_2 KaiC d 95.8 0.01 2.3E-07 59.1 4.7 41 171-213 34-74 (259)
342 cd03245 ABCC_bacteriocin_expor 95.8 0.01 2.2E-07 56.7 4.5 41 171-214 28-68 (220)
343 PRK10908 cell division protein 95.8 0.0099 2.1E-07 57.0 4.4 41 171-214 26-66 (222)
344 cd02034 CooC The accessory pro 95.8 0.011 2.4E-07 52.2 4.4 36 176-213 2-37 (116)
345 COG4619 ABC-type uncharacteriz 95.8 0.013 2.9E-07 56.3 5.1 49 163-214 19-67 (223)
346 PRK13539 cytochrome c biogenes 95.8 0.011 2.4E-07 56.4 4.6 41 171-214 26-66 (207)
347 TIGR03771 anch_rpt_ABC anchore 95.8 0.011 2.5E-07 57.0 4.7 40 172-214 5-44 (223)
348 cd03250 ABCC_MRP_domain1 Domai 95.8 0.011 2.4E-07 56.0 4.5 37 171-210 29-65 (204)
349 PRK13638 cbiO cobalt transport 95.8 0.0096 2.1E-07 59.2 4.3 41 171-214 25-65 (271)
350 KOG0781 Signal recognition par 95.8 0.16 3.5E-06 55.4 13.5 212 15-267 244-474 (587)
351 TIGR02324 CP_lyasePhnL phospho 95.8 0.011 2.5E-07 56.6 4.6 37 171-210 32-68 (224)
352 TIGR03411 urea_trans_UrtD urea 95.8 0.012 2.5E-07 57.2 4.7 41 171-214 26-66 (242)
353 cd03114 ArgK-like The function 95.8 0.0088 1.9E-07 54.9 3.6 36 176-213 2-37 (148)
354 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.8 0.011 2.3E-07 53.7 4.1 38 171-211 24-61 (144)
355 PRK13900 type IV secretion sys 95.8 0.046 1E-06 56.8 9.2 89 172-272 159-248 (332)
356 TIGR01978 sufC FeS assembly AT 95.8 0.0077 1.7E-07 58.3 3.3 43 171-214 24-66 (243)
357 PRK14242 phosphate transporter 95.7 0.0076 1.6E-07 59.0 3.3 44 171-214 30-75 (253)
358 cd03234 ABCG_White The White s 95.7 0.0085 1.8E-07 57.7 3.6 44 171-214 31-74 (226)
359 PF06745 KaiC: KaiC; InterPro 95.7 0.0078 1.7E-07 57.9 3.2 42 171-214 17-59 (226)
360 PRK06067 flagellar accessory p 95.7 0.013 2.9E-07 56.7 4.8 42 171-214 23-64 (234)
361 cd03243 ABC_MutS_homologs The 95.7 0.0085 1.8E-07 57.0 3.4 24 172-195 28-51 (202)
362 PRK11831 putative ABC transpor 95.7 0.011 2.4E-07 58.7 4.4 41 171-214 31-71 (269)
363 cd03294 ABC_Pro_Gly_Bertaine T 95.7 0.011 2.5E-07 58.7 4.5 41 171-214 48-88 (269)
364 PRK08533 flagellar accessory p 95.7 0.014 3.1E-07 57.2 5.0 41 172-214 23-63 (230)
365 cd03232 ABC_PDR_domain2 The pl 95.7 0.0084 1.8E-07 56.6 3.3 43 171-214 31-73 (192)
366 PRK13548 hmuV hemin importer A 95.7 0.012 2.5E-07 58.3 4.4 41 171-214 26-66 (258)
367 KOG0780 Signal recognition par 95.7 0.041 8.9E-07 58.5 8.5 94 168-269 96-194 (483)
368 PRK10463 hydrogenase nickel in 95.7 0.033 7.2E-07 57.1 7.7 42 170-214 101-142 (290)
369 cd03290 ABCC_SUR1_N The SUR do 95.7 0.014 3E-07 55.9 4.7 41 171-214 25-65 (218)
370 cd03223 ABCD_peroxisomal_ALDP 95.7 0.0089 1.9E-07 55.3 3.3 37 171-210 25-61 (166)
371 COG4240 Predicted kinase [Gene 95.7 0.011 2.4E-07 59.1 4.1 44 170-214 47-90 (300)
372 COG1124 DppF ABC-type dipeptid 95.7 0.015 3.2E-07 58.3 5.0 41 171-214 31-71 (252)
373 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.7 0.012 2.5E-07 57.1 4.2 38 171-211 46-83 (224)
374 COG3911 Predicted ATPase [Gene 95.7 0.013 2.8E-07 55.1 4.3 26 172-197 8-33 (183)
375 TIGR01188 drrA daunorubicin re 95.7 0.012 2.5E-07 59.7 4.4 41 171-214 17-57 (302)
376 COG1855 ATPase (PilT family) [ 95.7 0.0071 1.5E-07 65.2 2.9 25 173-197 263-287 (604)
377 PRK11614 livF leucine/isoleuci 95.7 0.012 2.6E-07 57.0 4.3 41 171-214 29-69 (237)
378 TIGR02323 CP_lyasePhnK phospho 95.7 0.013 2.7E-07 57.4 4.5 39 171-212 27-65 (253)
379 PRK14247 phosphate ABC transpo 95.7 0.0087 1.9E-07 58.4 3.3 44 171-214 27-72 (250)
380 cd03300 ABC_PotA_N PotA is an 95.7 0.013 2.8E-07 56.8 4.5 41 171-214 24-64 (232)
381 PRK13649 cbiO cobalt transport 95.7 0.011 2.5E-07 58.8 4.2 41 171-214 31-71 (280)
382 TIGR03877 thermo_KaiC_1 KaiC d 95.7 0.015 3.2E-07 57.0 4.9 42 171-214 19-60 (237)
383 PRK13648 cbiO cobalt transport 95.7 0.013 2.7E-07 58.3 4.5 41 171-214 33-73 (269)
384 PRK13632 cbiO cobalt transport 95.7 0.013 2.8E-07 58.3 4.6 41 171-214 33-73 (271)
385 PRK15112 antimicrobial peptide 95.7 0.013 2.8E-07 58.2 4.6 41 171-214 37-77 (267)
386 PTZ00202 tuzin; Provisional 95.7 0.055 1.2E-06 58.9 9.4 97 172-282 285-387 (550)
387 PRK15056 manganese/iron transp 95.6 0.012 2.6E-07 58.6 4.2 41 171-214 31-71 (272)
388 TIGR00972 3a0107s01c2 phosphat 95.6 0.013 2.8E-07 57.2 4.4 41 171-214 25-70 (247)
389 PRK10646 ADP-binding protein; 95.6 0.014 3.1E-07 54.5 4.4 29 171-199 26-54 (153)
390 PF03266 NTPase_1: NTPase; In 95.6 0.0086 1.9E-07 56.3 3.0 22 176-197 2-23 (168)
391 TIGR03881 KaiC_arch_4 KaiC dom 95.6 0.016 3.5E-07 55.7 5.0 42 171-214 18-59 (229)
392 PF13479 AAA_24: AAA domain 95.6 0.012 2.6E-07 56.8 4.1 34 171-214 1-34 (213)
393 PRK13543 cytochrome c biogenes 95.6 0.014 2.9E-07 56.0 4.4 41 171-214 35-75 (214)
394 PRK11247 ssuB aliphatic sulfon 95.6 0.012 2.7E-07 58.5 4.2 40 171-213 36-75 (257)
395 cd03280 ABC_MutS2 MutS2 homolo 95.6 0.0094 2E-07 56.7 3.3 21 174-194 29-49 (200)
396 KOG3078 Adenylate kinase [Nucl 95.6 0.036 7.9E-07 55.2 7.5 36 172-214 14-49 (235)
397 PRK10619 histidine/lysine/argi 95.6 0.013 2.8E-07 57.6 4.4 41 171-214 29-69 (257)
398 cd01123 Rad51_DMC1_radA Rad51_ 95.6 0.019 4E-07 55.2 5.4 43 171-213 17-63 (235)
399 PRK05703 flhF flagellar biosyn 95.6 0.013 2.9E-07 62.7 4.7 43 173-215 221-263 (424)
400 cd00984 DnaB_C DnaB helicase C 95.6 0.017 3.7E-07 55.8 5.0 43 171-214 11-53 (242)
401 PRK10744 pstB phosphate transp 95.6 0.0096 2.1E-07 58.7 3.3 44 171-214 37-82 (260)
402 PRK14262 phosphate ABC transpo 95.6 0.0098 2.1E-07 58.1 3.3 44 171-214 27-72 (250)
403 PRK14955 DNA polymerase III su 95.6 0.019 4E-07 60.7 5.6 29 171-199 36-64 (397)
404 CHL00195 ycf46 Ycf46; Provisio 95.6 0.034 7.4E-07 60.8 7.7 39 171-214 257-295 (489)
405 cd03231 ABC_CcmA_heme_exporter 95.6 0.015 3.3E-07 55.1 4.5 41 171-214 24-64 (201)
406 PRK10418 nikD nickel transport 95.6 0.015 3.2E-07 57.2 4.6 44 171-214 27-71 (254)
407 TIGR00390 hslU ATP-dependent p 95.6 0.012 2.6E-07 63.2 4.1 27 172-198 46-72 (441)
408 PRK13635 cbiO cobalt transport 95.6 0.015 3.2E-07 58.4 4.5 41 171-214 31-71 (279)
409 TIGR00968 3a0106s01 sulfate AB 95.6 0.015 3.2E-07 56.6 4.5 41 171-214 24-64 (237)
410 COG1618 Predicted nucleotide k 95.6 0.012 2.7E-07 55.8 3.7 27 171-197 3-29 (179)
411 cd03369 ABCC_NFT1 Domain 2 of 95.6 0.016 3.6E-07 54.9 4.7 41 171-214 32-72 (207)
412 PRK10419 nikE nickel transport 95.6 0.014 3.1E-07 58.0 4.5 41 171-214 36-76 (268)
413 COG1125 OpuBA ABC-type proline 95.5 0.02 4.3E-07 58.1 5.3 46 171-219 25-70 (309)
414 TIGR02881 spore_V_K stage V sp 95.5 0.012 2.6E-07 58.3 3.8 27 171-197 40-66 (261)
415 COG1419 FlhF Flagellar GTP-bin 95.5 0.085 1.8E-06 56.4 10.3 45 171-215 201-245 (407)
416 cd03267 ABC_NatA_like Similar 95.5 0.01 2.2E-07 57.8 3.3 39 171-212 45-83 (236)
417 PRK14241 phosphate transporter 95.5 0.011 2.3E-07 58.3 3.4 43 171-213 28-72 (258)
418 cd03233 ABC_PDR_domain1 The pl 95.5 0.01 2.2E-07 56.5 3.1 44 171-214 31-74 (202)
419 PRK08903 DnaA regulatory inact 95.5 0.015 3.3E-07 55.9 4.3 40 173-214 42-81 (227)
420 TIGR02868 CydC thiol reductant 95.5 0.013 2.8E-07 63.5 4.3 41 171-214 359-399 (529)
421 COG0378 HypB Ni2+-binding GTPa 95.5 0.02 4.2E-07 55.7 5.0 46 170-218 9-55 (202)
422 TIGR03873 F420-0_ABC_ATP propo 95.5 0.015 3.3E-07 57.1 4.4 41 171-214 25-65 (256)
423 PRK14962 DNA polymerase III su 95.5 0.019 4.2E-07 62.3 5.6 28 171-198 34-61 (472)
424 PRK11231 fecE iron-dicitrate t 95.5 0.015 3.3E-07 57.1 4.3 41 171-214 26-66 (255)
425 PRK14251 phosphate ABC transpo 95.5 0.011 2.4E-07 57.7 3.3 27 171-197 28-54 (251)
426 TIGR03740 galliderm_ABC gallid 95.5 0.016 3.5E-07 55.6 4.4 40 171-213 24-63 (223)
427 PRK14267 phosphate ABC transpo 95.5 0.011 2.4E-07 57.8 3.3 44 171-214 28-73 (253)
428 PRK13645 cbiO cobalt transport 95.5 0.015 3.3E-07 58.4 4.4 40 171-213 35-74 (289)
429 PLN00020 ribulose bisphosphate 95.5 0.015 3.2E-07 61.8 4.3 40 170-214 145-184 (413)
430 TIGR01288 nodI ATP-binding ABC 95.5 0.016 3.4E-07 58.8 4.5 41 171-214 28-68 (303)
431 PRK14261 phosphate ABC transpo 95.5 0.011 2.5E-07 57.8 3.4 26 171-196 30-55 (253)
432 PRK14960 DNA polymerase III su 95.5 0.043 9.3E-07 62.1 8.2 29 171-199 35-63 (702)
433 PRK14245 phosphate ABC transpo 95.5 0.011 2.5E-07 57.7 3.3 44 171-214 27-72 (250)
434 PRK14244 phosphate ABC transpo 95.5 0.012 2.5E-07 57.7 3.4 44 171-214 29-74 (251)
435 COG0467 RAD55 RecA-superfamily 95.5 0.019 4.2E-07 56.7 4.9 42 171-214 21-62 (260)
436 PRK12402 replication factor C 95.5 0.018 3.9E-07 58.0 4.8 40 175-214 38-77 (337)
437 PRK14255 phosphate ABC transpo 95.4 0.012 2.5E-07 57.6 3.3 26 171-196 29-54 (252)
438 PRK14239 phosphate transporter 95.4 0.012 2.5E-07 57.5 3.3 26 171-196 29-54 (252)
439 PRK14248 phosphate ABC transpo 95.4 0.012 2.6E-07 58.4 3.4 44 171-214 45-90 (268)
440 cd03281 ABC_MSH5_euk MutS5 hom 95.4 0.012 2.6E-07 57.1 3.4 22 173-194 29-50 (213)
441 PRK14270 phosphate ABC transpo 95.4 0.012 2.6E-07 57.6 3.4 44 171-214 28-73 (251)
442 COG1116 TauB ABC-type nitrate/ 95.4 0.02 4.3E-07 57.4 4.9 51 161-214 17-67 (248)
443 PRK13633 cobalt transporter AT 95.4 0.016 3.5E-07 58.0 4.4 41 171-214 34-74 (280)
444 PRK03992 proteasome-activating 95.4 0.014 2.9E-07 61.7 4.0 39 171-214 163-201 (389)
445 cd03237 ABC_RNaseL_inhibitor_d 95.4 0.012 2.6E-07 58.2 3.3 38 171-211 23-60 (246)
446 PRK13547 hmuV hemin importer A 95.4 0.016 3.4E-07 58.2 4.2 41 171-214 25-73 (272)
447 TIGR02769 nickel_nikE nickel i 95.4 0.017 3.7E-07 57.2 4.4 41 171-214 35-75 (265)
448 PF03215 Rad17: Rad17 cell cyc 95.4 0.016 3.4E-07 63.8 4.5 27 173-199 45-71 (519)
449 cd00267 ABC_ATPase ABC (ATP-bi 95.4 0.013 2.8E-07 53.2 3.3 41 171-214 23-63 (157)
450 PRK13637 cbiO cobalt transport 95.4 0.017 3.7E-07 58.2 4.4 42 171-215 31-72 (287)
451 cd03273 ABC_SMC2_euk Eukaryoti 95.4 0.012 2.5E-07 57.9 3.2 27 172-198 24-50 (251)
452 PRK14274 phosphate ABC transpo 95.4 0.012 2.6E-07 57.9 3.3 27 171-197 36-62 (259)
453 PRK14256 phosphate ABC transpo 95.4 0.012 2.7E-07 57.5 3.3 44 171-214 28-73 (252)
454 COG3842 PotA ABC-type spermidi 95.4 0.018 4E-07 60.4 4.8 43 171-216 29-71 (352)
455 cd03278 ABC_SMC_barmotin Barmo 95.4 0.013 2.7E-07 56.1 3.3 22 175-196 24-45 (197)
456 PRK14240 phosphate transporter 95.4 0.012 2.7E-07 57.3 3.3 44 171-214 27-72 (250)
457 COG4615 PvdE ABC-type sideroph 95.4 0.023 4.9E-07 60.7 5.4 48 164-214 340-387 (546)
458 PRK13647 cbiO cobalt transport 95.4 0.018 3.9E-07 57.6 4.5 41 171-214 29-69 (274)
459 PRK13652 cbiO cobalt transport 95.4 0.018 3.9E-07 57.6 4.5 41 171-214 28-68 (277)
460 PRK14963 DNA polymerase III su 95.4 0.023 5E-07 62.3 5.6 29 170-198 33-61 (504)
461 PRK14253 phosphate ABC transpo 95.4 0.013 2.8E-07 57.2 3.4 27 171-197 27-53 (249)
462 TIGR02928 orc1/cdc6 family rep 95.4 0.021 4.6E-07 58.5 5.1 45 171-215 38-86 (365)
463 TIGR01650 PD_CobS cobaltochela 95.4 0.016 3.6E-07 60.2 4.2 33 175-212 66-98 (327)
464 PRK09544 znuC high-affinity zi 95.4 0.013 2.8E-07 57.9 3.4 27 171-197 28-54 (251)
465 PRK11153 metN DL-methionine tr 95.4 0.017 3.7E-07 59.8 4.4 41 171-214 29-69 (343)
466 PRK13650 cbiO cobalt transport 95.4 0.019 4E-07 57.6 4.5 41 171-214 31-71 (279)
467 PRK09580 sufC cysteine desulfu 95.4 0.012 2.6E-07 57.2 3.0 43 171-214 25-67 (248)
468 PF08477 Miro: Miro-like prote 95.4 0.014 3E-07 49.7 3.1 22 176-197 2-23 (119)
469 TIGR02640 gas_vesic_GvpN gas v 95.4 0.02 4.3E-07 57.1 4.7 32 176-212 24-55 (262)
470 PF08298 AAA_PrkA: PrkA AAA do 95.3 0.032 7E-07 58.6 6.3 48 137-198 66-113 (358)
471 PRK14721 flhF flagellar biosyn 95.3 0.041 9E-07 59.1 7.3 45 171-215 189-233 (420)
472 CHL00131 ycf16 sulfate ABC tra 95.3 0.012 2.7E-07 57.3 3.1 43 171-214 31-73 (252)
473 PRK14269 phosphate ABC transpo 95.3 0.014 3E-07 57.1 3.4 44 171-214 26-69 (246)
474 PRK10253 iron-enterobactin tra 95.3 0.018 3.8E-07 57.1 4.2 41 171-214 31-71 (265)
475 TIGR00176 mobB molybdopterin-g 95.3 0.018 3.9E-07 53.3 3.9 36 175-212 1-36 (155)
476 PLN03025 replication factor C 95.3 0.048 1E-06 55.7 7.4 24 173-197 35-58 (319)
477 PRK13640 cbiO cobalt transport 95.3 0.021 4.7E-07 57.2 4.8 44 171-214 31-74 (282)
478 PRK13646 cbiO cobalt transport 95.3 0.019 4.2E-07 57.7 4.4 41 171-214 31-71 (286)
479 PRK13639 cbiO cobalt transport 95.3 0.019 4E-07 57.4 4.3 41 171-214 26-66 (275)
480 TIGR03707 PPK2_P_aer polyphosp 95.3 1.3 2.8E-05 44.1 17.1 157 171-383 29-190 (230)
481 PF13086 AAA_11: AAA domain; P 95.3 0.017 3.6E-07 54.0 3.7 25 173-197 17-41 (236)
482 cd03274 ABC_SMC4_euk Eukaryoti 95.3 0.013 2.9E-07 56.7 3.1 25 173-197 25-49 (212)
483 PRK09984 phosphonate/organopho 95.3 0.014 3E-07 57.6 3.3 44 171-214 28-71 (262)
484 cd04163 Era Era subfamily. Er 95.3 0.016 3.6E-07 50.4 3.4 24 173-196 3-26 (168)
485 TIGR02524 dot_icm_DotB Dot/Icm 95.3 0.014 3E-07 61.3 3.4 25 173-197 134-158 (358)
486 PRK00080 ruvB Holliday junctio 95.3 0.022 4.8E-07 58.3 4.8 27 172-198 50-76 (328)
487 PRK13644 cbiO cobalt transport 95.3 0.021 4.4E-07 57.1 4.5 41 171-214 26-66 (274)
488 cd03213 ABCG_EPDR ABCG transpo 95.3 0.015 3.3E-07 55.0 3.3 43 171-214 33-75 (194)
489 PRK14949 DNA polymerase III su 95.3 0.026 5.7E-07 65.5 5.8 29 171-199 36-64 (944)
490 PRK14235 phosphate transporter 95.3 0.015 3.2E-07 57.8 3.4 44 171-214 43-88 (267)
491 PRK14268 phosphate ABC transpo 95.3 0.015 3.2E-07 57.4 3.3 44 171-214 36-81 (258)
492 TIGR01241 FtsH_fam ATP-depende 95.2 0.04 8.7E-07 59.8 6.9 39 171-214 86-124 (495)
493 COG1136 SalX ABC-type antimicr 95.2 0.015 3.3E-07 57.6 3.3 42 170-214 28-69 (226)
494 PRK05973 replicative DNA helic 95.2 0.022 4.8E-07 56.7 4.6 42 171-214 62-103 (237)
495 TIGR01243 CDC48 AAA family ATP 95.2 0.047 1E-06 62.1 7.7 67 171-264 210-276 (733)
496 PRK13643 cbiO cobalt transport 95.2 0.021 4.5E-07 57.6 4.4 42 170-214 29-70 (288)
497 PRK14969 DNA polymerase III su 95.2 0.027 5.9E-07 61.9 5.7 29 171-199 36-64 (527)
498 cd03299 ABC_ModC_like Archeal 95.2 0.022 4.7E-07 55.4 4.4 41 171-214 23-63 (235)
499 PRK09087 hypothetical protein; 95.2 0.016 3.5E-07 56.8 3.5 84 175-271 46-129 (226)
500 PRK12727 flagellar biosynthesi 95.2 0.023 5.1E-07 62.7 5.0 45 171-215 348-392 (559)
No 1
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.94 E-value=2.1e-26 Score=212.94 Aligned_cols=172 Identities=23% Similarity=0.231 Sum_probs=144.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHHH
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL 251 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~l 251 (477)
+|++.+++|+|||||||+...+...+. ++..+||+|++.. .+++. +| . .....+.+.+...
T Consensus 1 m~~l~IvaG~NGsGKstv~~~~~~~~~-----~~~~~VN~D~iA~------~i~p~-~p---~----~~~i~A~r~ai~~ 61 (187)
T COG4185 1 MKRLDIVAGPNGSGKSTVYASTLAPLL-----PGIVFVNADEIAA------QISPD-NP---T----SAAIQAARVAIDR 61 (187)
T ss_pred CceEEEEecCCCCCceeeeeccchhhc-----CCeEEECHHHHhh------hcCCC-Cc---h----HHHHHHHHHHHHH
Confidence 589999999999999999998877763 4789999999943 35552 22 2 1133566778889
Q ss_pred HHHHHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccCCC
Q 011773 252 LVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKP 331 (477)
Q Consensus 252 i~~aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~~p 331 (477)
+..+++.|.+|++||||+.+++++.+.+ ++..|
T Consensus 62 i~~~I~~~~~F~~ETtLS~~s~~~~ik~-----------------------------------------------Ak~~G 94 (187)
T COG4185 62 IARLIDLGRPFIAETTLSGPSILELIKT-----------------------------------------------AKAAG 94 (187)
T ss_pred HHHHHHcCCCcceEEeeccchHHHHHHH-----------------------------------------------HHhCC
Confidence 9999999999999999999988775421 46778
Q ss_pred ceEEEEEEe-cCHHHHHHHHHHhhhccccccchhhhhhHHHHHHHhHHHhhccCceEEEEecCCCCCCCeEEEEeeCCCc
Q 011773 332 YRIELVGVV-CDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVDNARLYCTNAVGGPPRLIAWKDGDSN 410 (477)
Q Consensus 332 Y~I~lv~V~-~d~elav~Rv~~R~~~gGr~Vp~~~ql~~~~rf~~~~~~y~~lvD~a~lydnn~~~~~p~lia~k~~~~~ 410 (477)
|.|.+.++. -+++++++|+..|+..|||+||++++++||.|..+++.+|..+||++.+|||++. . |+|++++.++..
T Consensus 95 f~I~L~y~~i~~~elavERVk~RVa~GGH~IpED~Ir~RY~rsle~l~~~l~l~dr~~IydNS~~-~-~~lv~e~~~~~i 172 (187)
T COG4185 95 FYIVLNYIVIDSVELAVERVKLRVAKGGHDIPEDKIRRRYRRSLELLAQALTLADRATIYDNSRL-A-PRLVAEFSGGGI 172 (187)
T ss_pred eEEEEEEEEeCcHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhcceeEEecCCCC-C-ceEEEEeCCceE
Confidence 999987776 5799999999999999999999999999999999999999999999999998765 3 999999987654
Q ss_pred e
Q 011773 411 L 411 (477)
Q Consensus 411 ~ 411 (477)
+
T Consensus 173 ~ 173 (187)
T COG4185 173 I 173 (187)
T ss_pred E
Confidence 3
No 2
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=99.92 E-value=3.3e-24 Score=202.97 Aligned_cols=172 Identities=23% Similarity=0.330 Sum_probs=125.9
Q ss_pred cCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHH
Q 011773 169 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAA 248 (477)
Q Consensus 169 ~~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la 248 (477)
+...|++++++|+|||||||++..+...+. ..+.++||+|+++...+.+..+... .+......++..+..++
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~----~~~~v~i~~D~~r~~~p~~~~~~~~----~~~~~~~~~~~~a~~~~ 82 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFG----GGGIVVIDADEFRQFHPDYDELLKA----DPDEASELTQKEASRLA 82 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT-----TT-SEEE-GGGGGGGSTTHHHHHHH----HCCCTHHHHHHHHHHHH
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhcc----CCCeEEEehHHHHHhccchhhhhhh----hhhhhHHHHHHHHHHHH
Confidence 468899999999999999999999999862 3579999999999877766665442 12234455677788999
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhcc
Q 011773 249 SSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFS 328 (477)
Q Consensus 249 ~~li~~aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~ 328 (477)
..+++.++++|.+||+|+||+++.+...+++. ++
T Consensus 83 ~~~~~~a~~~~~nii~E~tl~~~~~~~~~~~~----------------------------------------------~k 116 (199)
T PF06414_consen 83 EKLIEYAIENRYNIIFEGTLSNPSKLRKLIRE----------------------------------------------AK 116 (199)
T ss_dssp HHHHHHHHHCT--EEEE--TTSSHHHHHHHHH----------------------------------------------HH
T ss_pred HHHHHHHHHcCCCEEEecCCCChhHHHHHHHH----------------------------------------------HH
Confidence 99999999999999999999998777655433 35
Q ss_pred CCCceEEEEEEecCHHHHHHHHHHhhhcc------ccccchhhhhhHHHHHHHhHHHhhc--cCceEEEEecCC
Q 011773 329 RKPYRIELVGVVCDAYLAVVRGIRRAIMM------KRAVRVNSQLKSHKRFANAFRNYCE--LVDNARLYCTNA 394 (477)
Q Consensus 329 ~~pY~I~lv~V~~d~elav~Rv~~R~~~g------Gr~Vp~~~ql~~~~rf~~~~~~y~~--lvD~a~lydnn~ 394 (477)
.+||.|++++|.+|+++++.|+..|...+ ||.||...+..+|..+.+++..... ++|++.+|||+.
T Consensus 117 ~~GY~v~l~~v~~~~e~s~~rv~~R~~~~~~~~g~GR~v~~~~~~~~~~~~~~~~~~~~~~~~~d~i~v~d~~g 190 (199)
T PF06414_consen 117 AAGYKVELYYVAVPPELSIERVRQRYEEGLQAKGIGRFVPEEKHDRAYANLPETLEALENEKLFDRITVYDRDG 190 (199)
T ss_dssp CTT-EEEEEEE---HHHHHHHHHHHHHHHC-C-TT-----HCCCHCCHHHHHHHHHHHHHCT--SEEEEE-TTS
T ss_pred cCCceEEEEEEECCHHHHHHHHHHHHHccccccCCCcCCCHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 67999999999999999999999999999 9999999999999999999987766 899999999754
No 3
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.61 E-value=9.5e-15 Score=129.03 Aligned_cols=136 Identities=21% Similarity=0.195 Sum_probs=94.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHHHHHH
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT 254 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~li~~ 254 (477)
||+|+|+|||||||+++.+.+.++ +.+|+.|.++ ..+.+.+.+. .....+ ....+...+...+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~-------~~~i~~D~~~------~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~ 65 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG-------AVVISQDEIR------RRLAGEDPPS-PSDYIE-AEERAYQILNAAIRK 65 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST-------EEEEEHHHHH------HHHCCSSSGC-CCCCHH-HHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC-------CEEEeHHHHH------HHHccccccc-chhHHH-HHHHHHHHHHHHHHH
Confidence 689999999999999999998873 8999999984 3344421111 111111 123344566678888
Q ss_pred HHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccCCCceE
Q 011773 255 ALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRI 334 (477)
Q Consensus 255 aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~~pY~I 334 (477)
.+..|.++|+|+|+..+..++.+.+++ ...||.+
T Consensus 66 ~l~~g~~~vvd~~~~~~~~r~~~~~~~----------------------------------------------~~~~~~~ 99 (143)
T PF13671_consen 66 ALRNGNSVVVDNTNLSREERARLRELA----------------------------------------------RKHGYPV 99 (143)
T ss_dssp HHHTT-EEEEESS--SHHHHHHHHHHH----------------------------------------------HHCTEEE
T ss_pred HHHcCCCceeccCcCCHHHHHHHHHHH----------------------------------------------HHcCCeE
Confidence 999999999999999888777665543 3446778
Q ss_pred EEEEEecCHHHHHHHHHHhhhccccc--cchhhhhhHHH
Q 011773 335 ELVGVVCDAYLAVVRGIRRAIMMKRA--VRVNSQLKSHK 371 (477)
Q Consensus 335 ~lv~V~~d~elav~Rv~~R~~~gGr~--Vp~~~ql~~~~ 371 (477)
.+|+++++.+++.+|...|...+++. ++.+...+.++
T Consensus 100 ~~v~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~ 138 (143)
T PF13671_consen 100 RVVYLDAPEETLRERLAQRNREGDKRFEVPEEVFDRMLA 138 (143)
T ss_dssp EEEEECHHHHHHHHHHHTTHCCCTTS----HHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHhcCCcccccccCcHHHHHHHHH
Confidence 88999999999999999999887654 44443333333
No 4
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=1.5e-14 Score=142.76 Aligned_cols=143 Identities=21% Similarity=0.296 Sum_probs=114.8
Q ss_pred chhhhHHHHhhhhchhhhhhhhhhHHHHHHHHH-HHHHHHhcCCCccccccccccccCCCCEEEEEEcCCCCcHHHHHHH
Q 011773 114 KLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVE-EMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKD 192 (477)
Q Consensus 114 ~~~~~~~~~~~~~~~~~v~~~~~~~r~~~~l~e-e~~~~~~~~~~~~~~v~~~~~~~~~~P~LIlLaGp~GSGKSTlAr~ 192 (477)
++---+-+--+|.+.+.||||++++ +|++|++ +.++.|++ |.+|+.+ ..++.|.+|+++|+||.||||+|..
T Consensus 36 ~iA~~i~e~L~~~~~~~v~~~eir~-~~~~l~~k~~~e~a~r-----Y~lwR~i-r~~~~p~IILIGGasGVGkStIA~E 108 (299)
T COG2074 36 SIAIEIQEELKKEGIRLVTKDEIRE-VYQKLLEKGDPEVAKR-----YLLWRRI-RKMKRPLIILIGGASGVGKSTIAGE 108 (299)
T ss_pred HHHHHHHHHHHhCCCeEeeHHHHHH-HHHHHHHhcCHHHHHH-----HHHHHHH-hccCCCeEEEecCCCCCChhHHHHH
Confidence 4444455566788889999999999 9999999 88999999 9999999 4478899999999999999999999
Q ss_pred HHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCC----------------C--chhhHHHHHhHhHH-HHHHHHHH
Q 011773 193 IMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHH----------------D--DMLQTAELVHQSST-DAASSLLV 253 (477)
Q Consensus 193 La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p----------------~--d~~~~ae~v~~~a~-~la~~li~ 253 (477)
++.++++ -.+|++|.|++ ++|+.+++...| . .+.-+++..|.++. ......++
T Consensus 109 lA~rLgI------~~visTD~IRE--vlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF~dqa~~V~~GI~~VI~ 180 (299)
T COG2074 109 LARRLGI------RSVISTDSIRE--VLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGFEDQASAVMVGIEAVIE 180 (299)
T ss_pred HHHHcCC------ceeecchHHHH--HHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhhhHHHHhHHHHHHHHHHHH
Confidence 9999975 57899999975 556655532111 1 22335566666554 77889999
Q ss_pred HHHhCCCcEEEeCCCCCH
Q 011773 254 TALNEGRDVIMDGTLSWV 271 (477)
Q Consensus 254 ~aL~~G~sVIiDgT~s~~ 271 (477)
+|+.+|.|+|+||++.=|
T Consensus 181 RAi~eG~~lIIEGvHlVP 198 (299)
T COG2074 181 RAIEEGEDLIIEGVHLVP 198 (299)
T ss_pred HHHhcCcceEEEeeeecc
Confidence 999999999999998754
No 5
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.56 E-value=9.8e-14 Score=138.17 Aligned_cols=144 Identities=22% Similarity=0.169 Sum_probs=102.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHHH
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL 251 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~l 251 (477)
+|.+|+++|+|||||||+|+.|++++. ++.+||.|.++. .+...+.........+. ...........
T Consensus 1 m~~liil~G~pGSGKSTla~~L~~~~~------~~~~l~~D~~r~------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 67 (300)
T PHA02530 1 MMKIILTVGVPGSGKSTWAREFAAKNP------KAVNVNRDDLRQ------SLFGHGEWGEYKFTKEK-EDLVTKAQEAA 67 (300)
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCC------CCEEEeccHHHH------HhcCCCcccccccChHH-HHHHHHHHHHH
Confidence 478999999999999999999999872 579999999843 23221100000000000 11122445566
Q ss_pred HHHHHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccCCC
Q 011773 252 LVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKP 331 (477)
Q Consensus 252 i~~aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~~p 331 (477)
+..++..|.+||+|+++..+..+..+.++++ ..+
T Consensus 68 ~~~~l~~g~~vIid~~~~~~~~~~~~~~la~----------------------------------------------~~~ 101 (300)
T PHA02530 68 ALAALKSGKSVIISDTNLNPERRRKWKELAK----------------------------------------------ELG 101 (300)
T ss_pred HHHHHHcCCeEEEeCCCCCHHHHHHHHHHHH----------------------------------------------HcC
Confidence 7788899999999999998887776554432 235
Q ss_pred ceEEEEEEecCHHHHHHHHHHhhhccccccchhhhhhHHHHHHHhH
Q 011773 332 YRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAF 377 (477)
Q Consensus 332 Y~I~lv~V~~d~elav~Rv~~R~~~gGr~Vp~~~ql~~~~rf~~~~ 377 (477)
+.+.++++.+|.+++.+|...| ++|.+|.+.+.++|+++....
T Consensus 102 ~~~~~v~l~~~~e~~~~R~~~R---~~~~~~~~~i~~~~~~~~~~~ 144 (300)
T PHA02530 102 AEFEEKVFDVPVEELVKRNRKR---GERAVPEDVLRSMFKQMKEYR 144 (300)
T ss_pred CeEEEEEeCCCHHHHHHHHHcc---CcCCCCHHHHHHHHHHHHHhc
Confidence 5677889999999999999999 689999888887777776543
No 6
>PRK06762 hypothetical protein; Provisional
Probab=99.48 E-value=4.5e-13 Score=122.42 Aligned_cols=133 Identities=16% Similarity=0.115 Sum_probs=89.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHHH
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL 251 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~l 251 (477)
||.+|+|+|+|||||||+|+.|.+.++ .++.+++.|.++ +.+... ...+.. .........
T Consensus 1 m~~li~i~G~~GsGKST~A~~L~~~l~-----~~~~~i~~D~~r------~~l~~~--~~~~~~-------~~~~~~~~~ 60 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERLG-----RGTLLVSQDVVR------RDMLRV--KDGPGN-------LSIDLIEQL 60 (166)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEecHHHHH------HHhccc--cCCCCC-------cCHHHHHHH
Confidence 689999999999999999999999873 368899998884 333321 001100 011223345
Q ss_pred HHHHHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccCCC
Q 011773 252 LVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKP 331 (477)
Q Consensus 252 i~~aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~~p 331 (477)
+..++..|.+||+|+++....+++.+..++ ...+
T Consensus 61 ~~~~~~~g~~vild~~~~~~~~~~~~~~l~----------------------------------------------~~~~ 94 (166)
T PRK06762 61 VRYGLGHCEFVILEGILNSDRYGPMLKELI----------------------------------------------HLFR 94 (166)
T ss_pred HHHHHhCCCEEEEchhhccHhHHHHHHHHH----------------------------------------------HhcC
Confidence 566788999999999987765554332221 1223
Q ss_pred ceEEEEEEecCHHHHHHHHHHhhhccccccchhhhhhHHHH
Q 011773 332 YRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKR 372 (477)
Q Consensus 332 Y~I~lv~V~~d~elav~Rv~~R~~~gGr~Vp~~~ql~~~~r 372 (477)
+.+.++++++|++++.+|...|.. .|.++.+...+.|..
T Consensus 95 ~~~~~v~Ldap~e~~~~R~~~R~~--~~~~~~~~l~~~~~~ 133 (166)
T PRK06762 95 GNAYTYYFDLSFEETLRRHSTRPK--SHEFGEDDMRRWWNP 133 (166)
T ss_pred CCeEEEEEeCCHHHHHHHHhcccc--cccCCHHHHHHHHhh
Confidence 456789999999999999999974 466665544444433
No 7
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=99.38 E-value=1.9e-11 Score=124.29 Aligned_cols=164 Identities=20% Similarity=0.325 Sum_probs=115.4
Q ss_pred hhHHHhhhcccchhhh---chhhhHHHHhhhhchhhhhhhhhhHHHHHHHHH-HHHHHHhcCCCccccccccccccCCCC
Q 011773 98 SLMISQVLSVESEKKT---KLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVE-EMKAIRREGESHCTDVMVPAALSERSP 173 (477)
Q Consensus 98 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~r~~~~l~e-e~~~~~~~~~~~~~~v~~~~~~~~~~P 173 (477)
-.+++|.|+.-.=+-. ++-.-|.+.-|+++.+++++++..++|+++|.+ ....++.. |.+|+.+.. .+.|
T Consensus 19 rgiL~rsL~~~g~~~~~A~~iA~~i~~~L~~~g~~~i~~~el~~~V~~~L~~~~~~~~~~~-----y~~~~~i~~-~~~p 92 (301)
T PRK04220 19 KGILARSLTAAGMKPSIAYEIASEIEEELKKEGIKEITKEELRRRVYYKLIEKDYEEVAEK-----YLLWRRIRK-SKEP 92 (301)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCEEeeHHHHHHHHHHHHHHhCcHhHHHH-----HHHHHHHhc-CCCC
Confidence 3466666664322211 444445566677899999999999999999999 44667665 999998843 5689
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcC-----------------CCCC-ch-h
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-----------------GHHD-DM-L 234 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~-----------------g~p~-d~-~ 234 (477)
.+|+++|++||||||+|..|+..+++ ..+|++|.+++ .+++.++.. +.|. +. .
T Consensus 93 ~iIlI~G~sgsGKStlA~~La~~l~~------~~vi~~D~~re--~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~ 164 (301)
T PRK04220 93 IIILIGGASGVGTSTIAFELASRLGI------RSVIGTDSIRE--VMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPV 164 (301)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCC------CEEEechHHHH--HHHHhcchhhccchhhhhhhhhhcccCCCCCchhh
Confidence 99999999999999999999999852 36899999973 222222111 0011 11 1
Q ss_pred hHHHHHhHhH-HHHHHHHHHHHHhCCCcEEEeCCCCCHHHHH
Q 011773 235 QTAELVHQSS-TDAASSLLVTALNEGRDVIMDGTLSWVPFVE 275 (477)
Q Consensus 235 ~~ae~v~~~a-~~la~~li~~aL~~G~sVIiDgT~s~~~~re 275 (477)
-.+...+.+. ...+...+..++++|.++|+||++..|.|.+
T Consensus 165 l~g~~~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~ 206 (301)
T PRK04220 165 IYGFERHVEPVSVGVEAVIERALKEGISVIIEGVHIVPGFIK 206 (301)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHH
Confidence 1222223222 3668899999999999999999999987755
No 8
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.36 E-value=2.8e-11 Score=110.32 Aligned_cols=147 Identities=11% Similarity=0.036 Sum_probs=90.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHHHHHHH
Q 011773 176 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTA 255 (477)
Q Consensus 176 IlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~li~~a 255 (477)
|+|.|++||||||+++.|...++ ..+||.|.+.....+++.+.+..... .. .......+...+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~-------~~~v~~D~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~ 66 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG-------AKFIEGDDLHPAANIEKMSAGIPLND--DD-----RWPWLQNLNDASTAA 66 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC-------CeEEeCccccChHHHHHHHcCCCCCh--hh-----HHHHHHHHHHHHHHH
Confidence 57899999999999999999873 78999999853322233222221111 00 111223334456667
Q ss_pred HhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccCCCceEE
Q 011773 256 LNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRIE 335 (477)
Q Consensus 256 L~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~~pY~I~ 335 (477)
+..|.++|+++|+..+.+++.+. ..+..+.
T Consensus 67 l~~~~~~Vi~~t~~~~~~r~~~~--------------------------------------------------~~~~~~~ 96 (163)
T TIGR01313 67 AAKNKVGIITCSALKRHYRDILR--------------------------------------------------EAEPNLH 96 (163)
T ss_pred HhcCCCEEEEecccHHHHHHHHH--------------------------------------------------hcCCCEE
Confidence 78888889998877665544221 1123466
Q ss_pred EEEEecCHHHHHHHHHHhhhccccccchhhhhhHHHHHHHhHHHhhccCceEEEEecC
Q 011773 336 LVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVDNARLYCTN 393 (477)
Q Consensus 336 lv~V~~d~elav~Rv~~R~~~gGr~Vp~~~ql~~~~rf~~~~~~y~~lvD~a~lydnn 393 (477)
++++++|++++.+|...|. |+.++.+.+...|..+. .....-.++.++||+
T Consensus 97 ~i~l~~~~e~~~~R~~~R~---~~~~~~~~i~~~~~~~~----~~~~~e~~~~~id~~ 147 (163)
T TIGR01313 97 FIYLSGDKDVILERMKARK---GHFMKADMLESQFAALE----EPLADETDVLRVDID 147 (163)
T ss_pred EEEEeCCHHHHHHHHHhcc---CCCCCHHHHHHHHHHhC----CCCCCCCceEEEECC
Confidence 7899999999999999995 55555544444443322 110111246788864
No 9
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.35 E-value=8e-12 Score=135.48 Aligned_cols=108 Identities=18% Similarity=0.092 Sum_probs=88.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHH
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 249 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~ 249 (477)
..+|.||+|+|+|||||||+|+.++... ++++||.|.+.. + ..+.
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~-------g~~~vn~D~lg~----~------------------------~~~~ 410 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPA-------GYKHVNADTLGS----T------------------------QNCL 410 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHc-------CCeEECcHHHHH----H------------------------HHHH
Confidence 4679999999999999999999999875 479999998721 0 1122
Q ss_pred HHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccC
Q 011773 250 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR 329 (477)
Q Consensus 250 ~li~~aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~ 329 (477)
..+.++|.+|++||+|+|+.++..|..++++|+ .
T Consensus 411 ~~a~~~L~~G~sVVIDaTn~~~~~R~~~i~lAk----------------------------------------------~ 444 (526)
T TIGR01663 411 TACERALDQGKRCAIDNTNPDAASRAKFLQCAR----------------------------------------------A 444 (526)
T ss_pred HHHHHHHhCCCcEEEECCCCCHHHHHHHHHHHH----------------------------------------------H
Confidence 357789999999999999999999998877664 3
Q ss_pred CCceEEEEEEecCHHHHHHHHHHhhhccc
Q 011773 330 KPYRIELVGVVCDAYLAVVRGIRRAIMMK 358 (477)
Q Consensus 330 ~pY~I~lv~V~~d~elav~Rv~~R~~~gG 358 (477)
.++.+.++++++|.+++..|...|....+
T Consensus 445 ~gv~v~~i~~~~p~e~~~~Rn~~R~~~~~ 473 (526)
T TIGR01663 445 AGIPCRCFLFNAPLAQAKHNIAFRELSDS 473 (526)
T ss_pred cCCeEEEEEeCCCHHHHHHHHHhhccCCc
Confidence 35667889999999999999999986433
No 10
>COG4639 Predicted kinase [General function prediction only]
Probab=99.30 E-value=2.2e-11 Score=113.01 Aligned_cols=132 Identities=20% Similarity=0.215 Sum_probs=97.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHHH
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL 251 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~l 251 (477)
++.+++|.|++||||||+|+.... +..+++.|+|+. .+... .+. +........+.+.+...
T Consensus 1 ~~~LvvL~G~~~sGKsT~ak~n~~---------~~~~lsld~~r~------~lg~~-~~~---e~sqk~~~~~~~~l~~~ 61 (168)
T COG4639 1 MRILVVLRGASGSGKSTFAKENFL---------QNYVLSLDDLRL------LLGVS-ASK---ENSQKNDELVWDILYKQ 61 (168)
T ss_pred CceEEEEecCCCCchhHHHHHhCC---------CcceecHHHHHH------Hhhhc-hhh---hhccccHHHHHHHHHHH
Confidence 468999999999999999997543 357899999843 12110 000 11111122355777789
Q ss_pred HHHHHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccCCC
Q 011773 252 LVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKP 331 (477)
Q Consensus 252 i~~aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~~p 331 (477)
++..+..|+..|+|+|+.+++.+..++++|++. |
T Consensus 62 l~qrl~~Gk~tiidAtn~rr~~r~~l~~La~~y----------------------------------------------~ 95 (168)
T COG4639 62 LEQRLRRGKFTIIDATNLRREDRRKLIDLAKAY----------------------------------------------G 95 (168)
T ss_pred HHHHHHcCCeEEEEcccCCHHHHHHHHHHHHHh----------------------------------------------C
Confidence 999999999999999999999999999988642 3
Q ss_pred ceEEEEEEecCHHHHHHHHHHhhhccccccchhhhhhHHHH
Q 011773 332 YRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKR 372 (477)
Q Consensus 332 Y~I~lv~V~~d~elav~Rv~~R~~~gGr~Vp~~~ql~~~~r 372 (477)
|.+.+++++.|++++.+|...| .|.||.+.+.+.++.
T Consensus 96 ~~~~~ivfdtp~~~c~aRNk~~----~Rqv~~~VI~r~~r~ 132 (168)
T COG4639 96 YKIYAIVFDTPLELCLARNKLR----ERQVPEEVIPRMLRE 132 (168)
T ss_pred CeEEEEEEeCCHHHHHHHhhcc----chhCCHHHHHHHHHH
Confidence 4466788999999998887744 488998888887766
No 11
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.29 E-value=1e-10 Score=105.00 Aligned_cols=118 Identities=17% Similarity=0.143 Sum_probs=75.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHHHHH-
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLV- 253 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~li~- 253 (477)
||+|+|+|||||||+++.|.+.+ +..++|.|.++......+... +.+..... .......+.....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~-------~~~~i~~D~~~~~~~~~~~~~--~~~~~~~~-----~~~~~~~~~~~~~~ 66 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL-------GAPFIDGDDLHPPANIAKMAA--GIPLNDED-----RWPWLQALTDALLA 66 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc-------CCEEEeCcccccHHHHHHHHc--CCCCCccc-----hhhHHHHHHHHHHH
Confidence 58999999999999999999986 478999999964311111111 22211100 0111111111222
Q ss_pred HHHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccCCCce
Q 011773 254 TALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYR 333 (477)
Q Consensus 254 ~aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~~pY~ 333 (477)
..+..|.++|+|+++..+.+++.+.++ . .++.
T Consensus 67 ~l~~~~~~vVid~~~~~~~~r~~~~~~-----------------------------------------------~-~~~~ 98 (150)
T cd02021 67 KLASAGEGVVVACSALKRIYRDILRGG-----------------------------------------------A-ANPR 98 (150)
T ss_pred HHHhCCCCEEEEeccccHHHHHHHHhc-----------------------------------------------C-CCCC
Confidence 223589999999998876555433211 1 3455
Q ss_pred EEEEEEecCHHHHHHHHHHhh
Q 011773 334 IELVGVVCDAYLAVVRGIRRA 354 (477)
Q Consensus 334 I~lv~V~~d~elav~Rv~~R~ 354 (477)
+.++++.||+++..+|...|.
T Consensus 99 ~~~v~l~~~~~~~~~R~~~R~ 119 (150)
T cd02021 99 VRFVHLDGPREVLAERLAARK 119 (150)
T ss_pred EEEEEEECCHHHHHHHHHhcc
Confidence 778999999999999999995
No 12
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.26 E-value=4.8e-11 Score=110.74 Aligned_cols=127 Identities=18% Similarity=0.168 Sum_probs=81.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHh-cCC--CCCchhhHHHHHhHhHHHHHH
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALS-SKG--HHDDMLQTAELVHQSSTDAAS 249 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls-~~g--~p~d~~~~ae~v~~~a~~la~ 249 (477)
..+|+|+|+|||||||+++.|.+.++ ..+.+++.|.+....+... .. ..+ ...+.....+..+...+....
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~-----~~~~~~~~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 75 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLA-----EPWLHFGVDSFIEALPLKC-QDAEGGIEFDGDGGVSPGPEFRLLEGAWY 75 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhC-----CCccccCccHHHHhcChhh-cccccccccCccCCcccchHHHHHHHHHH
Confidence 45899999999999999999999863 2356789998743211000 00 000 000001111222344566667
Q ss_pred HHHHHHHhCCCcEEEeCCCC-CHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhcc
Q 011773 250 SLLVTALNEGRDVIMDGTLS-WVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFS 328 (477)
Q Consensus 250 ~li~~aL~~G~sVIiDgT~s-~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~ 328 (477)
..+..++++|.+||+|.++. .+.+++.+..
T Consensus 76 ~~~~~~l~~G~~VIvD~~~~~~~~~r~~~~~------------------------------------------------- 106 (175)
T cd00227 76 EAVAAMARAGANVIADDVFLGRAALQDCWRS------------------------------------------------- 106 (175)
T ss_pred HHHHHHHhCCCcEEEeeeccCCHHHHHHHHH-------------------------------------------------
Confidence 77888999999999999987 4433321110
Q ss_pred CCCceEEEEEEecCHHHHHHHHHHhh
Q 011773 329 RKPYRIELVGVVCDAYLAVVRGIRRA 354 (477)
Q Consensus 329 ~~pY~I~lv~V~~d~elav~Rv~~R~ 354 (477)
..+..+.+|++.||.+++.+|...|.
T Consensus 107 ~~~~~~~~v~l~~~~~~l~~R~~~R~ 132 (175)
T cd00227 107 FVGLDVLWVGVRCPGEVAEGRETARG 132 (175)
T ss_pred hcCCCEEEEEEECCHHHHHHHHHhcC
Confidence 11234677899999999999999985
No 13
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.23 E-value=2.2e-10 Score=109.84 Aligned_cols=139 Identities=16% Similarity=0.211 Sum_probs=92.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCC-------------CCC---chhh
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKG-------------HHD---DMLQ 235 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g-------------~p~---d~~~ 235 (477)
.|.+|+++|.|||||||+++.|+..+++ ..++..|.+++ .+++.... + +++ +...
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~------~~~~~~D~~r~--~~r~~~~~-~p~l~~s~~~a~~~~~~~~~~~~~ 72 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAI------DIVLSGDYLRE--FLRPYVDD-EPVLAKSVYDAWEFYGSMTDENIV 72 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCC------eEEehhHHHHH--HHHHhcCC-CCCcccccHHHHHHcCCcchhHHH
Confidence 5789999999999999999999999752 45788888854 33332221 1 110 0011
Q ss_pred HHHHHhH-hHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhcc
Q 011773 236 TAELVHQ-SSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEG 314 (477)
Q Consensus 236 ~ae~v~~-~a~~la~~li~~aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~ 314 (477)
.+...|. ..+..+..++..++.+|.++|+|+++..+.+++.. +
T Consensus 73 ~~y~~q~~~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~----~-------------------------------- 116 (197)
T PRK12339 73 KGYLDQARAIMPGINRVIRRALLNGEDLVIESLYFHPPMIDEN----R-------------------------------- 116 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHH----H--------------------------------
Confidence 1111121 23355778899999999999999999988665311 0
Q ss_pred chhhHhhhhhhhccCCCceEEEEEEe-cCHHHHHHHHHHhhhccccccchhhhhhHHH
Q 011773 315 EEDYQQKENRQVFSRKPYRIELVGVV-CDAYLAVVRGIRRAIMMKRAVRVNSQLKSHK 371 (477)
Q Consensus 315 ~~~~~~~~~~~~~~~~pY~I~lv~V~-~d~elav~Rv~~R~~~gGr~Vp~~~ql~~~~ 371 (477)
... +.++++. .++++...|...|...++++.|.+..++.++
T Consensus 117 --------------~~~--v~~i~l~v~d~e~lr~Rl~~R~~~~~~~~p~~~~~~~~~ 158 (197)
T PRK12339 117 --------------TNN--IRAFYLYIRDAELHRSRLADRINYTHKNSPGKRLAEHLP 158 (197)
T ss_pred --------------hcC--eEEEEEEeCCHHHHHHHHHHHhhcccCCCcHHHHHHHHH
Confidence 001 2334444 5899999999999999999998765554443
No 14
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.23 E-value=4.4e-10 Score=103.97 Aligned_cols=159 Identities=14% Similarity=0.207 Sum_probs=90.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHh-Hh--HHHHHHHH
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVH-QS--STDAASSL 251 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~-~~--a~~la~~l 251 (477)
+|+|.|+|||||||+++.|+++++ +.+|+.+++- ++.+.. +.+.. ........ .. .-..+..+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~-------~~~is~~d~l-----r~~~~~-~~~~~-~~~~~~~~~g~~~~~~~~~~l 66 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG-------FTHLSAGDLL-----RAEIKS-GSENG-ELIESMIKNGKIVPSEVTVKL 66 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC-------CeEEECChHH-----HHHHhc-CChHH-HHHHHHHHCCCcCCHHHHHHH
Confidence 589999999999999999999974 7999986551 222321 11000 00000000 00 00222344
Q ss_pred HHHHHhC--CCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccC
Q 011773 252 LVTALNE--GRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR 329 (477)
Q Consensus 252 i~~aL~~--G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~ 329 (477)
+..++.. +..+|+||...+......+.+.+. ..
T Consensus 67 l~~~~~~~~~~~~vlDg~p~~~~q~~~~~~~~~---------------------------------------------~~ 101 (183)
T TIGR01359 67 LKNAIQADGSKKFLIDGFPRNEENLEAWEKLMD---------------------------------------------NK 101 (183)
T ss_pred HHHHHhccCCCcEEEeCCCCCHHHHHHHHHHHh---------------------------------------------cC
Confidence 4555443 678999998877655443322110 00
Q ss_pred CCceEEEEEEecCHHHHHHHHHHhhhccccccc-hhhhhhHHHHHHHh---HHHhhccCceEEEEecC
Q 011773 330 KPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVR-VNSQLKSHKRFANA---FRNYCELVDNARLYCTN 393 (477)
Q Consensus 330 ~pY~I~lv~V~~d~elav~Rv~~R~~~gGr~Vp-~~~ql~~~~rf~~~---~~~y~~lvD~a~lydnn 393 (477)
....+ ++++++|++++..|...|....||.-. .+.+.+++..|.+. ...|..--+.++.+|++
T Consensus 102 ~~~d~-~i~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~~~~~~~~~~~~Id~~ 168 (183)
T TIGR01359 102 VNFKF-VLFFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYENKGKVKEINAE 168 (183)
T ss_pred CCCCE-EEEEECCHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 11122 588899999999999999865555433 44444444444433 23333334567778854
No 15
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.23 E-value=1.1e-10 Score=114.26 Aligned_cols=133 Identities=20% Similarity=0.268 Sum_probs=88.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHHHHHH
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT 254 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~li~~ 254 (477)
||+|+|+|||||||+|+.|++.+. ..+.++.+++.|.+++. +.. +. . .... .........+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~--~~~~~v~~i~~D~lr~~------~~~--~~-~--~~e~----~~~~~~~~~i~~ 63 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLS--EKNIDVIILGTDLIRES------FPV--WK-E--KYEE----FIRDSTLYLIKT 63 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH--HcCCceEEEccHHHHHH------hHH--hh-H--HhHH----HHHHHHHHHHHH
Confidence 689999999999999999998863 12235788888887432 110 00 0 0011 112334457788
Q ss_pred HHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccCCCceE
Q 011773 255 ALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRI 334 (477)
Q Consensus 255 aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~~pY~I 334 (477)
+++.|..||+|+++....++..+...++ ..++..
T Consensus 64 ~l~~~~~VI~D~~~~~~~~r~~l~~~ak----------------------------------------------~~~~~~ 97 (249)
T TIGR03574 64 ALKNKYSVIVDDTNYYNSMRRDLINIAK----------------------------------------------EYNKNY 97 (249)
T ss_pred HHhCCCeEEEeccchHHHHHHHHHHHHH----------------------------------------------hCCCCE
Confidence 8999999999998877766665554433 223345
Q ss_pred EEEEEecCHHHHHHHHHHhhhccccccchhhhhhHHHHHH
Q 011773 335 ELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFA 374 (477)
Q Consensus 335 ~lv~V~~d~elav~Rv~~R~~~gGr~Vp~~~ql~~~~rf~ 374 (477)
.++++++|.++++.|...|. +.+|.+.+...+.+|.
T Consensus 98 ~~I~l~~p~e~~~~Rn~~R~----~~~~~~~i~~l~~r~e 133 (249)
T TIGR03574 98 IIIYLKAPLDTLLRRNIERG----EKIPNEVIKDMYEKFD 133 (249)
T ss_pred EEEEecCCHHHHHHHHHhCC----CCCCHHHHHHHHHhhC
Confidence 56889999999999988774 4566555555555554
No 16
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=99.22 E-value=6.9e-10 Score=118.53 Aligned_cols=182 Identities=16% Similarity=0.171 Sum_probs=119.1
Q ss_pred hhhchhhhhhhhhhHHHHHHHHHHHH-HHHhcCCCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCC
Q 011773 124 RKQRFEKVTKDLKMKRVFSTLVEEMK-AIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA 202 (477)
Q Consensus 124 ~~~~~~~v~~~~~~~r~~~~l~ee~~-~~~~~~~~~~~~v~~~~~~~~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~ 202 (477)
++.+-+.++++..+..|...|.+.+. .++.. +.+|.+... .++|.+|+++|+||+||||++..|+..+++
T Consensus 211 ~~kg~~~~~ra~VR~~V~~~L~~~l~~~~a~~-----y~la~~i~~-~k~p~vil~~G~~G~GKSt~a~~LA~~lg~--- 281 (475)
T PRK12337 211 RRSGDRVVRRDQLRRKVEALLLEEAGEEVARR-----YRLLRSIRR-PPRPLHVLIGGVSGVGKSVLASALAYRLGI--- 281 (475)
T ss_pred HhcccccccHHHHHHHHHHHHHhhhhhhHHHH-----HHHHHHhhc-cCCCeEEEEECCCCCCHHHHHHHHHHHcCC---
Confidence 33455677788888888888888553 22333 666666633 357999999999999999999999999863
Q ss_pred CCCeEEEeCcccccchHHHHHHhcCCCC------------------------C-chhhHHHHHhHh-HHHHHHHHHHHHH
Q 011773 203 ATNAVVVEADAFKETDVIYRALSSKGHH------------------------D-DMLQTAELVHQS-STDAASSLLVTAL 256 (477)
Q Consensus 203 ~~~~vvIdaD~Ike~d~irk~Ls~~g~p------------------------~-d~~~~ae~v~~~-a~~la~~li~~aL 256 (477)
..+|++|.+++ .++..++....| . +..-.+...|-+ ....+..+++.++
T Consensus 282 ---~~ii~tD~iR~--~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~~~~~vi~Gf~~q~~~V~~gi~~vI~r~l 356 (475)
T PRK12337 282 ---TRIVSTDAVRE--VLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEPTRAEVLRGFRDQVQQVAVGLGAIQERSA 356 (475)
T ss_pred ---cEEeehhHHHH--HHHhhcchhhccchhhchhhHHhhccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34889999864 222222221111 0 011112222222 2256889999999
Q ss_pred hCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccCCCceEEE
Q 011773 257 NEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRIEL 336 (477)
Q Consensus 257 ~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~~pY~I~l 336 (477)
..|.|+|+||++..+.+++.- ....+-.+.+
T Consensus 357 ~eG~SvIIEGVHl~P~~i~~~-------------------------------------------------~~~~~~~i~f 387 (475)
T PRK12337 357 QEGTSLVLEGVHLVPGYLRHP-------------------------------------------------YQAGALVVPM 387 (475)
T ss_pred HcCCeEEEECCCCCHHHHHHH-------------------------------------------------HhcCCceEEE
Confidence 999999999999988765410 0111222333
Q ss_pred EEEecCHHHHHHHHHHhhhccccccchhhhhh
Q 011773 337 VGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLK 368 (477)
Q Consensus 337 v~V~~d~elav~Rv~~R~~~gGr~Vp~~~ql~ 368 (477)
+.+..|.+.-..|...|...++..-|.+..++
T Consensus 388 lv~isdeeeH~~Rf~~Ra~~~~~~r~~~ky~~ 419 (475)
T PRK12337 388 LVTLPDEALHRRRFELRDRETGASRPRERYLR 419 (475)
T ss_pred EEEECCHHHHHHHHHHHhhhccCCCchhHHHH
Confidence 33445899999999999987766555544433
No 17
>COG0645 Predicted kinase [General function prediction only]
Probab=99.20 E-value=2.3e-10 Score=107.44 Aligned_cols=123 Identities=20% Similarity=0.161 Sum_probs=92.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCC---CCCchhhHHHHHhHhHHHHHH
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKG---HHDDMLQTAELVHQSSTDAAS 249 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g---~p~d~~~~ae~v~~~a~~la~ 249 (477)
+.+++++|.|||||||+|+.|.+.++ +.+|.+|.+ +|.|.+.. ..+.-.+..+. ....+..+.
T Consensus 1 ~~l~l~~Gl~GsGKstlA~~l~~~lg-------A~~lrsD~i------rk~L~g~p~~~r~~~g~ys~~~-~~~vy~~l~ 66 (170)
T COG0645 1 GRLVLVGGLPGSGKSTLARGLAELLG-------AIRLRSDVI------RKRLFGVPEETRGPAGLYSPAA-TAAVYDELL 66 (170)
T ss_pred CeEEEEecCCCccHhHHHHHHHhhcC-------ceEEehHHH------HHHhcCCcccccCCCCCCcHHH-HHHHHHHHH
Confidence 46899999999999999999999974 899988877 56677610 00011122222 334556677
Q ss_pred HHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccC
Q 011773 250 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR 329 (477)
Q Consensus 250 ~li~~aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~ 329 (477)
.....+++.|.+||+|+||.++..|+.....|+.
T Consensus 67 ~~A~l~l~~G~~VVlDa~~~r~~~R~~~~~~A~~---------------------------------------------- 100 (170)
T COG0645 67 GRAELLLSSGHSVVLDATFDRPQERALARALARD---------------------------------------------- 100 (170)
T ss_pred HHHHHHHhCCCcEEEecccCCHHHHHHHHHHHhc----------------------------------------------
Confidence 7889999999999999999999988877665543
Q ss_pred CCceEEEEEEecCHHHHHHHHHHhhh
Q 011773 330 KPYRIELVGVVCDAYLAVVRGIRRAI 355 (477)
Q Consensus 330 ~pY~I~lv~V~~d~elav~Rv~~R~~ 355 (477)
.+-.+.++.+.+++++...|...|..
T Consensus 101 ~gv~~~li~~~ap~~v~~~rl~aR~~ 126 (170)
T COG0645 101 VGVAFVLIRLEAPEEVLRGRLAARKG 126 (170)
T ss_pred cCCceEEEEcCCcHHHHHHHHHHhCC
Confidence 23345667778899999999999875
No 18
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.19 E-value=5.5e-11 Score=115.83 Aligned_cols=169 Identities=21% Similarity=0.287 Sum_probs=105.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHH--HHH
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSST--DAA 248 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~--~la 248 (477)
.++.+|.|+|++||||||+++.|...++ .....+|.-|.+ |+..+.. +.+........|.+|. +++
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~----~~~~~~I~~D~Y------Yk~~~~~--~~~~~~~~n~d~p~A~D~dLl 73 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLG----VEKVVVISLDDY------YKDQSHL--PFEERNKINYDHPEAFDLDLL 73 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhC----cCcceEeecccc------ccchhhc--CHhhcCCcCccChhhhcHHHH
Confidence 4569999999999999999999999985 235788999988 2322111 1010111122355554 556
Q ss_pred HHHHHHHHhCCCcEE---EeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhh
Q 011773 249 SSLLVTALNEGRDVI---MDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQ 325 (477)
Q Consensus 249 ~~li~~aL~~G~sVI---iDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~ 325 (477)
...+. .|.+|+.+. +|-.-..+.. .. ....| ..| .++||+.-..++.
T Consensus 74 ~~~L~-~L~~g~~v~~P~yd~~~~~r~~--~~-----------i~~~p-~~V----VIvEGi~~l~d~~----------- 123 (218)
T COG0572 74 IEHLK-DLKQGKPVDLPVYDYKTHTREP--ET-----------IKVEP-NDV----VIVEGILLLYDER----------- 123 (218)
T ss_pred HHHHH-HHHcCCcccccccchhcccccC--Cc-----------cccCC-CcE----EEEecccccccHH-----------
Confidence 66666 455666642 2311111100 00 01122 222 5789999765542
Q ss_pred hccCCCceEEEEEEecCHHHHHHHHHHhhh-ccccccc-hhhh-----hhHHHHHHHhHHHhhccC
Q 011773 326 VFSRKPYRIELVGVVCDAYLAVVRGIRRAI-MMKRAVR-VNSQ-----LKSHKRFANAFRNYCELV 384 (477)
Q Consensus 326 ~~~~~pY~I~lv~V~~d~elav~Rv~~R~~-~gGr~Vp-~~~q-----l~~~~rf~~~~~~y~~lv 384 (477)
.+.-+.+. |+|++|.++++.|.+.|+. +.||.++ +-.| .++|..|.+..++|++++
T Consensus 124 --lr~~~d~k-Ifvdtd~D~RliRri~RD~~~rg~~~e~vi~qy~~~vkp~~~~fIeptk~~ADii 186 (218)
T COG0572 124 --LRDLMDLK-IFVDTDADVRLIRRIKRDVQERGRDLESVIEQYVKTVRPMYEQFIEPTKKYADII 186 (218)
T ss_pred --HHhhcCEE-EEEeCCccHHHHHHHHHHHHHhCCCHHHHHHHHHHhhChhhhhccCcccccceEE
Confidence 34445555 8999999999999999998 5899988 3333 447777877777776654
No 19
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=99.12 E-value=3.8e-10 Score=106.58 Aligned_cols=127 Identities=14% Similarity=0.165 Sum_probs=80.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCch----hhHHHHHhHhHHHHHH
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDM----LQTAELVHQSSTDAAS 249 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~----~~~ae~v~~~a~~la~ 249 (477)
.+|+|.|+|.|||||+|+.|...+. ..+.++..|.|...-+ ......+..-.+ ... .......+.++.
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~-----~p~~~l~~D~f~~~~~--~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~ 73 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLP-----EPWLHLSVDTFVDMMP--PGRYRPGDGLEPAGDRPDG-GPLFRRLYAAMH 73 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSS-----S-EEEEEHHHHHHHS---GGGGTSTTSEEEETTSEEE--HHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCc-----CCeEEEecChHHhhcC--cccccCCccccccccCCch-hHHHHHHHHHHH
Confidence 5899999999999999999999974 4679999999954211 111110000000 000 122344566777
Q ss_pred HHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccC
Q 011773 250 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR 329 (477)
Q Consensus 250 ~li~~aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~ 329 (477)
.-+....+.|.+||+|.++..+.+... +|. ..-
T Consensus 74 ~~iaa~a~aG~~VIvD~v~~~~~~l~d------------------------------~l~-----------------~~L 106 (174)
T PF07931_consen 74 AAIAAMARAGNNVIVDDVFLGPRWLQD------------------------------CLR-----------------RLL 106 (174)
T ss_dssp HHHHHHHHTT-EEEEEE--TTTHHHHH------------------------------HHH-----------------HHH
T ss_pred HHHHHHHhCCCCEEEecCccCcHHHHH------------------------------HHH-----------------HHh
Confidence 788889999999999999988754221 110 122
Q ss_pred CCceEEEEEEecCHHHHHHHHHHhhh
Q 011773 330 KPYRIELVGVVCDAYLAVVRGIRRAI 355 (477)
Q Consensus 330 ~pY~I~lv~V~~d~elav~Rv~~R~~ 355 (477)
.||.+.+|+|.||+++..+|.+.|..
T Consensus 107 ~~~~vl~VgV~Cpleil~~RE~~RgD 132 (174)
T PF07931_consen 107 AGLPVLFVGVRCPLEILERRERARGD 132 (174)
T ss_dssp TTS-EEEEEEE--HHHHHHHHHHHTS
T ss_pred CCCceEEEEEECCHHHHHHHHHhcCC
Confidence 47889999999999999999999985
No 20
>PRK14527 adenylate kinase; Provisional
Probab=99.05 E-value=2.9e-09 Score=100.13 Aligned_cols=147 Identities=14% Similarity=0.099 Sum_probs=86.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHh-H--hHHHH
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVH-Q--SSTDA 247 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~-~--~a~~l 247 (477)
.+|.+|+|.|+|||||||+++.|++.++ +.+++.|++- +..+.. +.+. .....+... . .....
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~-------~~~is~gd~~-----r~~~~~-~~~~-~~~~~~~~~~g~~~p~~~ 69 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG-------LKKLSTGDIL-----RDHVAR-GTEL-GQRAKPIMEAGDLVPDEL 69 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC-------CCCCCccHHH-----HHHHhc-CcHH-HHHHHHHHHcCCCCcHHH
Confidence 5689999999999999999999999974 6888887762 222221 1000 000000000 0 00122
Q ss_pred HHHHHHHHHhC--CCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhh
Q 011773 248 ASSLLVTALNE--GRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQ 325 (477)
Q Consensus 248 a~~li~~aL~~--G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~ 325 (477)
+..++...+.. +..+|+||...+...++.+..+++
T Consensus 70 ~~~l~~~~l~~~~~~~~VlDGfpr~~~q~~~~~~~~~------------------------------------------- 106 (191)
T PRK14527 70 ILALIRDELAGMEPVRVIFDGFPRTLAQAEALDRLLE------------------------------------------- 106 (191)
T ss_pred HHHHHHHHHhcCCCCcEEEcCCCCCHHHHHHHHHHHH-------------------------------------------
Confidence 33445555544 456999986655544332222211
Q ss_pred hccCCCceE-EEEEEecCHHHHHHHHHHhhhccccccc-hhhhhhHHHHHHHhH
Q 011773 326 VFSRKPYRI-ELVGVVCDAYLAVVRGIRRAIMMKRAVR-VNSQLKSHKRFANAF 377 (477)
Q Consensus 326 ~~~~~pY~I-~lv~V~~d~elav~Rv~~R~~~gGr~Vp-~~~ql~~~~rf~~~~ 377 (477)
..|..+ .+++++||++++..|...|....||.-. .+.+.++...|.+..
T Consensus 107 ---~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~~ 157 (191)
T PRK14527 107 ---ELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQT 157 (191)
T ss_pred ---HcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHHh
Confidence 111222 3578899999999999999876666544 566666665555444
No 21
>PRK06696 uridine kinase; Validated
Probab=99.04 E-value=3.9e-09 Score=101.97 Aligned_cols=48 Identities=21% Similarity=0.344 Sum_probs=36.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHH
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVI 220 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~i 220 (477)
..|.+|.|+|++||||||+|+.|++.++ ..+..+++++.|+|-.....
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~--~~g~~v~~~~~Ddf~~~~~~ 67 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIK--KRGRPVIRASIDDFHNPRVI 67 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEeccccccCCHHH
Confidence 4689999999999999999999999873 11224567789999544333
No 22
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.03 E-value=9e-10 Score=106.26 Aligned_cols=151 Identities=20% Similarity=0.242 Sum_probs=91.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHHH
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL 251 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~l 251 (477)
++.+|.++|++||||||+++.+.+ + |+.+||+|.+. +.+...+.+ ..
T Consensus 1 ~~~iIglTG~igsGKStva~~~~~-~-------G~~vidaD~v~------r~~~~~~~~-------------------~~ 47 (201)
T COG0237 1 MMLIIGLTGGIGSGKSTVAKILAE-L-------GFPVIDADDVA------REVVEPGGE-------------------AL 47 (201)
T ss_pred CceEEEEecCCCCCHHHHHHHHHH-c-------CCeEEEccHHH------HHHHhccch-------------------HH
Confidence 367999999999999999999998 5 48999999983 223332111 12
Q ss_pred HHHHHhCCCcEE-EeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchh-hHhhhhh-----
Q 011773 252 LVTALNEGRDVI-MDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEED-YQQKENR----- 324 (477)
Q Consensus 252 i~~aL~~G~sVI-iDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~-~~~~~~~----- 324 (477)
...+...|..++ -|+.+.++..++.++..+.+..+ +|.+-+|+...... ..+....
T Consensus 48 ~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~~~~-----------------Le~i~hPli~~~~~~~~~~~~~~~~~~ 110 (201)
T COG0237 48 QEIAERFGLEILDEDGGLDRRKLREKVFNDPEARLK-----------------LEKILHPLIRAEIKVVIDGARSPYVVL 110 (201)
T ss_pred HHHHHHcCCcccCCCchhHHHHHHHHHcCCHHHHHH-----------------HHHhhhHHHHHHHHHHHHHhhCCceEE
Confidence 233556788887 47888888787777765554433 34444443332210 0000000
Q ss_pred --hhccCC-C--ceEEEEEEecCHHHHHHHHHHhhhccccccc--hhhhhhHHHH
Q 011773 325 --QVFSRK-P--YRIELVGVVCDAYLAVVRGIRRAIMMKRAVR--VNSQLKSHKR 372 (477)
Q Consensus 325 --~~~~~~-p--Y~I~lv~V~~d~elav~Rv~~R~~~gGr~Vp--~~~ql~~~~r 372 (477)
...... + +.-.+++|+||++++.+|.+.|+..+-..+. +..|++..++
T Consensus 111 eiplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~~~~~e~~~~~~~~Q~~~~ek 165 (201)
T COG0237 111 EIPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRDGLDEEDAEARLASQRDLEEK 165 (201)
T ss_pred EchHHHhccccccCCEEEEEECCHHHHHHHHHhcCCCCHHHHHHHHHhcCCHHHH
Confidence 001111 1 1225789999999999999999854422232 5566665555
No 23
>PLN02200 adenylate kinase family protein
Probab=99.02 E-value=1.4e-08 Score=99.80 Aligned_cols=46 Identities=22% Similarity=0.275 Sum_probs=37.7
Q ss_pred ccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 162 VMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 162 v~~~~~~~~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
-+++..+..+.|.+|+|.|+|||||||+++.|++.++ +.+|+.+++
T Consensus 32 ~~~~~~~~~~~~~ii~I~G~PGSGKsT~a~~La~~~g-------~~his~gdl 77 (234)
T PLN02200 32 EERGSSSKEKTPFITFVLGGPGSGKGTQCEKIVETFG-------FKHLSAGDL 77 (234)
T ss_pred ccccCCccCCCCEEEEEECCCCCCHHHHHHHHHHHhC-------CeEEEccHH
Confidence 3455545466789999999999999999999999974 789998665
No 24
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=99.01 E-value=3.3e-09 Score=96.79 Aligned_cols=115 Identities=15% Similarity=0.097 Sum_probs=75.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHHHHHH
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT 254 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~li~~ 254 (477)
+++|+|+|||||||+++.|+..+. .++.++.+++.|.++. .+... .+..+. + ..+..+.+......
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~--~~g~~~~~i~~d~~r~------~l~~~-~~~~~~---~--~~~~~~~~~~~a~~ 66 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF--QRGRPVYVLDGDNVRH------GLNKD-LGFSRE---D--REENIRRIAEVAKL 66 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH--HcCCCEEEEcCHHHHH------hhhhc-cCCCcc---h--HHHHHHHHHHHHHH
Confidence 478999999999999999999873 1223567889888843 23221 111110 0 11223333445566
Q ss_pred HHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccCCCceE
Q 011773 255 ALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRI 334 (477)
Q Consensus 255 aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~~pY~I 334 (477)
.+++|.+||+|.++.++..+..+.+++ . ++.+
T Consensus 67 l~~~G~~VIid~~~~~~~~R~~~~~l~----------------------------------------------~--~~~~ 98 (149)
T cd02027 67 LADAGLIVIAAFISPYREDREAARKII----------------------------------------------G--GGDF 98 (149)
T ss_pred HHhCCCEEEEccCCCCHHHHHHHHHhc----------------------------------------------C--CCCE
Confidence 778999999999998877665432211 1 4567
Q ss_pred EEEEEecCHHHHHHHHH
Q 011773 335 ELVGVVCDAYLAVVRGI 351 (477)
Q Consensus 335 ~lv~V~~d~elav~Rv~ 351 (477)
.++++.||.+++.+|..
T Consensus 99 ~~i~l~~~~e~~~~R~~ 115 (149)
T cd02027 99 LEVFVDTPLEVCEQRDP 115 (149)
T ss_pred EEEEEeCCHHHHHHhCc
Confidence 78999999999988753
No 25
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.00 E-value=1.4e-09 Score=103.23 Aligned_cols=34 Identities=38% Similarity=0.582 Sum_probs=30.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+.+|+|+|++||||||+++.|.+ + ++.+||+|.+
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~-------g~~~i~~D~~ 35 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-L-------GAPVIDADAI 35 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-c-------CCEEEEecHH
Confidence 57899999999999999999987 5 3789999998
No 26
>PRK14531 adenylate kinase; Provisional
Probab=99.00 E-value=1.9e-08 Score=94.23 Aligned_cols=35 Identities=23% Similarity=0.165 Sum_probs=30.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+.-|+|.|+|||||||+++.|++.++ +.+|+.+++
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~~g-------~~~is~gd~ 36 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAAHG-------LRHLSTGDL 36 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC-------CCeEecccH
Confidence 44689999999999999999999974 789998555
No 27
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.99 E-value=6.2e-09 Score=97.04 Aligned_cols=137 Identities=15% Similarity=0.112 Sum_probs=92.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCC-chhhHHHHHhHhHHHHH
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHD-DMLQTAELVHQSSTDAA 248 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~-d~~~~ae~v~~~a~~la 248 (477)
++-|-+|++.|.+||||||++++|.++++ +.|+|+|++..-....| +.. |+|- |..+++.. + ...
T Consensus 9 ~~~k~~i~vmGvsGsGKSTigk~L~~~l~-------~~F~dgDd~Hp~~NveK-M~~-GipLnD~DR~pWL-~----~i~ 74 (191)
T KOG3354|consen 9 GPFKYVIVVMGVSGSGKSTIGKALSEELG-------LKFIDGDDLHPPANVEK-MTQ-GIPLNDDDRWPWL-K----KIA 74 (191)
T ss_pred CCCceeEEEEecCCCChhhHHHHHHHHhC-------CcccccccCCCHHHHHH-Hhc-CCCCCcccccHHH-H----HHH
Confidence 45677999999999999999999999985 68999999965333323 332 5553 33333322 1 111
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhcc
Q 011773 249 SSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFS 328 (477)
Q Consensus 249 ~~li~~aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~ 328 (477)
. .....+..|+-+|+-++-..+.||+.+.... ++++..+
T Consensus 75 ~-~~~~~l~~~q~vVlACSaLKk~YRdILr~sl----------------------------------------~~gk~~~ 113 (191)
T KOG3354|consen 75 V-ELRKALASGQGVVLACSALKKKYRDILRHSL----------------------------------------KDGKPGK 113 (191)
T ss_pred H-HHHHHhhcCCeEEEEhHHHHHHHHHHHHhhc----------------------------------------ccCCccC
Confidence 1 2223444899999999888888888653211 1111123
Q ss_pred CCCceEEEEEEecCHHHHHHHHHHhhhccccccchh
Q 011773 329 RKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVN 364 (477)
Q Consensus 329 ~~pY~I~lv~V~~d~elav~Rv~~R~~~gGr~Vp~~ 364 (477)
.....+.+++...+.|+-.+|...|. ||..|.+
T Consensus 114 ~~~~~l~fi~l~~s~evi~~Rl~~R~---gHFMp~~ 146 (191)
T KOG3354|consen 114 CPESQLHFILLSASFEVILKRLKKRK---GHFMPAD 146 (191)
T ss_pred CccceEEEeeeeccHHHHHHHHhhcc---cccCCHH
Confidence 44455777888889999999999987 5999943
No 28
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.99 E-value=6.7e-09 Score=96.89 Aligned_cols=94 Identities=16% Similarity=0.146 Sum_probs=63.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHH
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 249 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~ 249 (477)
..+|.+++|+|++||||||+++.|...+. .++.+.++++.|.++ +.+... .+.. .+. ....+..+.
T Consensus 15 ~~~~~~i~i~G~~GsGKstla~~l~~~l~--~~~~~~~~l~~d~~r------~~l~~~-~~~~----~~~-~~~~~~~~~ 80 (184)
T TIGR00455 15 GHRGVVIWLTGLSGSGKSTIANALEKKLE--SKGYRVYVLDGDNVR------HGLNKD-LGFS----EED-RKENIRRIG 80 (184)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEECChHHH------hhhccc-cCCC----HHH-HHHHHHHHH
Confidence 46689999999999999999999998763 223347889999884 233321 1111 111 112223344
Q ss_pred HHHHHHHhCCCcEEEeCCCCCHHHHHHH
Q 011773 250 SLLVTALNEGRDVIMDGTLSWVPFVEQT 277 (477)
Q Consensus 250 ~li~~aL~~G~sVIiDgT~s~~~~re~l 277 (477)
......+.+|.+||+|+++..+.+++.+
T Consensus 81 ~~~~~~~~~G~~VI~d~~~~~~~~r~~~ 108 (184)
T TIGR00455 81 EVAKLFVRNGIIVITSFISPYRADRQMV 108 (184)
T ss_pred HHHHHHHcCCCEEEEecCCCCHHHHHHH
Confidence 4666788999999999998887776544
No 29
>PRK14532 adenylate kinase; Provisional
Probab=98.97 E-value=2.4e-08 Score=93.19 Aligned_cols=33 Identities=27% Similarity=0.292 Sum_probs=29.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
-|+|.|+|||||||+++.|++.++ +.+|+.|++
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g-------~~~is~~d~ 34 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG-------MVQLSTGDM 34 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC-------CeEEeCcHH
Confidence 378899999999999999999974 799999765
No 30
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.96 E-value=2.3e-08 Score=92.27 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=29.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.+|+|.|+|||||||+++.|++.++ +.+++.|++
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g-------~~~~~~g~~ 37 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYG-------FTHLSTGDL 37 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC-------CcEEeHHHH
Confidence 3788899999999999999999874 688888765
No 31
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.93 E-value=1.3e-08 Score=94.82 Aligned_cols=92 Identities=13% Similarity=0.179 Sum_probs=61.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHHH
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL 251 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~l 251 (477)
+|.+|.|+|.+||||||+|+.|.+++. ..+..+.++|.|.++.. +.+. .+ +.. ....+..+.+..+
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~--~~g~~~~~LDgD~lR~~------l~~d-l~----fs~-~dR~e~~rr~~~~ 66 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLF--ARGIKVYLLDGDNLRHG------LNAD-LG----FSK-EDREENIRRIAEV 66 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHH--HTTS-EEEEEHHHHCTT------TTTT-------SSH-HHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEecCcchhhc------cCCC-CC----CCH-HHHHHHHHHHHHH
Confidence 488999999999999999999999874 44567899999999642 3331 11 111 1133344555667
Q ss_pred HHHHHhCCCcEEEeCCCCCHHHHHHH
Q 011773 252 LVTALNEGRDVIMDGTLSWVPFVEQT 277 (477)
Q Consensus 252 i~~aL~~G~sVIiDgT~s~~~~re~l 277 (477)
.....++|..||+..+-..++.++..
T Consensus 67 A~ll~~~G~ivIva~isp~~~~R~~~ 92 (156)
T PF01583_consen 67 AKLLADQGIIVIVAFISPYREDREWA 92 (156)
T ss_dssp HHHHHHTTSEEEEE----SHHHHHHH
T ss_pred HHHHHhCCCeEEEeeccCchHHHHHH
Confidence 77888999999999877777666644
No 32
>PRK12338 hypothetical protein; Provisional
Probab=98.93 E-value=1.9e-08 Score=103.34 Aligned_cols=132 Identities=20% Similarity=0.290 Sum_probs=85.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCC--ch--h------------
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHD--DM--L------------ 234 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~--d~--~------------ 234 (477)
++|.+|+++|+|||||||+|+.|+.++++ ..+++.|.+++ .++..+.+.-.|. .. .
T Consensus 2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~------~~~~~tD~~r~--~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~ 73 (319)
T PRK12338 2 RKPYVILIGSASGIGKSTIASELARTLNI------KHLIETDFIRE--VVRGIIGKEYAPALHKSSYNAYTALRDKENFK 73 (319)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHCCC------eEEccChHHHH--HHcCCCCcccCchhhcccHHHHhhcCCccccc
Confidence 46899999999999999999999999853 23458888754 2222111110010 00 0
Q ss_pred ------hHHHHHhHh-HHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhh
Q 011773 235 ------QTAELVHQS-STDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENY 307 (477)
Q Consensus 235 ------~~ae~v~~~-a~~la~~li~~aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~y 307 (477)
-.+...+.+ ....+..++..++..|.++|+||++..|.++... +
T Consensus 74 ~~~~~i~~gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~----~------------------------- 124 (319)
T PRK12338 74 NNEELICAGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIE----Q------------------------- 124 (319)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhh----h-------------------------
Confidence 001111122 2366677889999999999999999888765521 0
Q ss_pred HHhhhccchhhHhhhhhhhccCCCceEEEEEEecCHHHHHHHHHHhhhcccc
Q 011773 308 WEQVKEGEEDYQQKENRQVFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKR 359 (477)
Q Consensus 308 w~~v~~~~~~~~~~~~~~~~~~~pY~I~lv~V~~d~elav~Rv~~R~~~gGr 359 (477)
......|.++++..|.+....|-..|...++|
T Consensus 125 --------------------~~~~~~v~~~vl~~dee~h~~Rf~~R~~~~~r 156 (319)
T PRK12338 125 --------------------FEENASIHFFILSADEEVHKERFVKRAMEIKR 156 (319)
T ss_pred --------------------hcccCceEEEEEECCHHHHHHHHHHhhhccCC
Confidence 00012355556668999999999999986665
No 33
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.93 E-value=8.3e-09 Score=96.69 Aligned_cols=80 Identities=19% Similarity=0.311 Sum_probs=54.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcC-CCCC-chhhHHHHHhHhHHHHHHHHH
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-GHHD-DMLQTAELVHQSSTDAASSLL 252 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~-g~p~-d~~~~ae~v~~~a~~la~~li 252 (477)
+|.++|+|||||||+|+.|++++| ..+|++..+ |+++... |.+- ++...++. +.+.-.......
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g-------l~~vsaG~i------FR~~A~e~gmsl~ef~~~AE~-~p~iD~~iD~rq 67 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG-------LKLVSAGTI------FREMARERGMSLEEFSRYAEE-DPEIDKEIDRRQ 67 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC-------CceeeccHH------HHHHHHHcCCCHHHHHHHHhc-CchhhHHHHHHH
Confidence 688999999999999999999985 789987766 4444432 3222 34444444 444444444455
Q ss_pred HHHHhCCCcEEEeCCCC
Q 011773 253 VTALNEGRDVIMDGTLS 269 (477)
Q Consensus 253 ~~aL~~G~sVIiDgT~s 269 (477)
.+... ..++|+|+-+.
T Consensus 68 ~e~a~-~~nvVlegrLA 83 (179)
T COG1102 68 KELAK-EGNVVLEGRLA 83 (179)
T ss_pred HHHHH-cCCeEEhhhhH
Confidence 55555 78999998765
No 34
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=98.92 E-value=4.4e-09 Score=101.71 Aligned_cols=37 Identities=27% Similarity=0.292 Sum_probs=33.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
..|..|.|+|++||||||+++.|.+.++ +.++|+|.+
T Consensus 4 ~~~~~IglTG~iGsGKStv~~~l~~~lg-------~~vidaD~i 40 (204)
T PRK14733 4 INTYPIGITGGIASGKSTATRILKEKLN-------LNVVCADTI 40 (204)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHcC-------CeEEeccHH
Confidence 3589999999999999999999998764 679999998
No 35
>PRK01184 hypothetical protein; Provisional
Probab=98.91 E-value=6.1e-08 Score=90.20 Aligned_cols=33 Identities=27% Similarity=0.280 Sum_probs=27.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.+|+|+|+|||||||+++ +++.+ ++.++++|++
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~-------g~~~i~~~d~ 34 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREM-------GIPVVVMGDV 34 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHc-------CCcEEEhhHH
Confidence 489999999999999987 66676 4788997544
No 36
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.90 E-value=1e-08 Score=99.67 Aligned_cols=140 Identities=20% Similarity=0.205 Sum_probs=93.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHH-HHHHHHHH
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSST-DAASSLLV 253 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~-~la~~li~ 253 (477)
||+++|+|||||||+|+.|++.+. .......++..|..... ++. +.......++.++. .-+..++.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~--~~i~~vi~l~kdy~~~i------~~D-----Eslpi~ke~yres~~ks~~rlld 69 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELR--QEIWRVIHLEKDYLRGI------LWD-----ESLPILKEVYRESFLKSVERLLD 69 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH--Hhhhhccccchhhhhhe------ecc-----cccchHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999988763 22334566767554211 111 11111122233333 33444777
Q ss_pred HHHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccCCCce
Q 011773 254 TALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYR 333 (477)
Q Consensus 254 ~aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~~pY~ 333 (477)
.+++ ..-||.|.|.--..++.++.-.|.+ ...+|.
T Consensus 70 Salk-n~~VIvDdtNYyksmRrqL~ceak~--------------------------------------------~~tt~c 104 (261)
T COG4088 70 SALK-NYLVIVDDTNYYKSMRRQLACEAKE--------------------------------------------RKTTWC 104 (261)
T ss_pred HHhc-ceEEEEecccHHHHHHHHHHHHHHh--------------------------------------------cCCceE
Confidence 7776 6678999999999999888765543 223443
Q ss_pred EEEEEEecCHHHHHHHHHHhhhccccccchhhhhhHHHHHHHhHH
Q 011773 334 IELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFR 378 (477)
Q Consensus 334 I~lv~V~~d~elav~Rv~~R~~~gGr~Vp~~~ql~~~~rf~~~~~ 378 (477)
++++.|+++++..|- .+.|...|.+...+.|.||-++=+
T Consensus 105 --iIyl~~plDtc~rrN----~ergepip~Evl~qly~RfEePn~ 143 (261)
T COG4088 105 --IIYLRTPLDTCLRRN----RERGEPIPEEVLRQLYDRFEEPNP 143 (261)
T ss_pred --EEEEccCHHHHHHhh----ccCCCCCCHHHHHHHHHhhcCCCC
Confidence 478889999997665 566789999999999999976543
No 37
>PTZ00301 uridine kinase; Provisional
Probab=98.89 E-value=4.8e-09 Score=101.67 Aligned_cols=146 Identities=16% Similarity=0.186 Sum_probs=77.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCC-eEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHH--HHHHH
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATN-AVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSST--DAASS 250 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~-~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~--~la~~ 250 (477)
.+|.|+|||||||||+|+.|.+.+. ...++. +.++.-|.+-..+. .+ |..........+..+. ..+..
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~-~~~~~~~~~vi~~D~yy~~~~---~~-----~~~~~~~~~~d~p~a~D~~~l~~ 74 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELM-AHCGPVSIGVICEDFYYRDQS---NI-----PESERAYTNYDHPKSLEHDLLTT 74 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHH-hhcCCCeEEEeCCCCCccCcc---cC-----CHHHhcCCCCCChhhhCHHHHHH
Confidence 6899999999999999998876641 000122 44788887732110 01 0000000011111222 23444
Q ss_pred HHHHHHhCCCcE---EEeCCCCCHHHHHHHHHHHhccccccccccccceecCCC-ceehhhHHhhhccchhhHhhhhhhh
Q 011773 251 LLVTALNEGRDV---IMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDG-TVIENYWEQVKEGEEDYQQKENRQV 326 (477)
Q Consensus 251 li~~aL~~G~sV---IiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg-~i~E~yw~~v~~~~~~~~~~~~~~~ 326 (477)
.+ ..|+.|..+ ++|-....+ .+....+.+.+ .++||++-.....
T Consensus 75 ~l-~~L~~g~~i~~P~yd~~~~~~-------------------~~~~~~i~p~~ViIvEGi~~l~~~~------------ 122 (210)
T PTZ00301 75 HL-RELKSGKTVQIPQYDYVHHTR-------------------SDTAVTMTPKSVLIVEGILLFTNAE------------ 122 (210)
T ss_pred HH-HHHHcCCcccCCCcccccCCc-------------------CCceEEeCCCcEEEEechhhhCCHH------------
Confidence 55 455566654 233221111 00011111112 4679988742221
Q ss_pred ccCCCceEEEEEEecCHHHHHHHHHHhhhc-cccccc
Q 011773 327 FSRKPYRIELVGVVCDAYLAVVRGIRRAIM-MKRAVR 362 (477)
Q Consensus 327 ~~~~pY~I~lv~V~~d~elav~Rv~~R~~~-gGr~Vp 362 (477)
.+.-+.+. ++|++|.+++..|.+.|+.. .|+..+
T Consensus 123 -l~~l~D~~-ifvd~~~d~~~~Rr~~Rd~~~rG~~~e 157 (210)
T PTZ00301 123 -LRNEMDCL-IFVDTPLDICLIRRAKRDMRERGRTFE 157 (210)
T ss_pred -HHHhCCEE-EEEeCChhHHHHHHHhhhHHhcCCCHH
Confidence 22234453 99999999999999999974 788764
No 38
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.87 E-value=2.3e-08 Score=92.47 Aligned_cols=119 Identities=18% Similarity=0.133 Sum_probs=84.5
Q ss_pred EcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCC-chhhHHHHHhHhHHHHHHHHHHHHHh
Q 011773 179 GGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHD-DMLQTAELVHQSSTDAASSLLVTALN 257 (477)
Q Consensus 179 aGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~-d~~~~ae~v~~~a~~la~~li~~aL~ 257 (477)
.|.+||||||++..|+++++ +.+|++|++.....+.|. +. |.|- |..+++.. ..+...+.....
T Consensus 1 MGVsG~GKStvg~~lA~~lg-------~~fidGDdlHp~aNi~KM-~~-GiPL~DdDR~pWL------~~l~~~~~~~~~ 65 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLG-------AKFIDGDDLHPPANIEKM-SA-GIPLNDDDRWPWL------EALGDAAASLAQ 65 (161)
T ss_pred CCCCccCHHHHHHHHHHHcC-------CceecccccCCHHHHHHH-hC-CCCCCcchhhHHH------HHHHHHHHHhhc
Confidence 38999999999999999985 799999999876666663 33 4453 32333222 222334444555
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccCCCceEEEE
Q 011773 258 EGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRIELV 337 (477)
Q Consensus 258 ~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~~pY~I~lv 337 (477)
.|.++|+-++-..+.||+.+. ...| .+.+|
T Consensus 66 ~~~~~vi~CSALKr~YRD~LR-------------------------------------------------~~~~-~~~Fv 95 (161)
T COG3265 66 KNKHVVIACSALKRSYRDLLR-------------------------------------------------EANP-GLRFV 95 (161)
T ss_pred CCCceEEecHHHHHHHHHHHh-------------------------------------------------ccCC-CeEEE
Confidence 777888888888888877542 1111 17789
Q ss_pred EEecCHHHHHHHHHHhhhccccccchhh
Q 011773 338 GVVCDAYLAVVRGIRRAIMMKRAVRVNS 365 (477)
Q Consensus 338 ~V~~d~elav~Rv~~R~~~gGr~Vp~~~ 365 (477)
+++-+.++...|...|. ||..|..-
T Consensus 96 ~L~g~~~~i~~Rm~~R~---gHFM~~~l 120 (161)
T COG3265 96 YLDGDFDLILERMKARK---GHFMPASL 120 (161)
T ss_pred EecCCHHHHHHHHHhcc---cCCCCHHH
Confidence 99999999999999986 89999443
No 39
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=98.87 E-value=2.1e-08 Score=100.81 Aligned_cols=138 Identities=17% Similarity=0.180 Sum_probs=83.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHHHHHH
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT 254 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~li~~ 254 (477)
||+|+|.|||||||+|+.|.+.+. +.+....+|+.|.+. +....+. +. ..+ ..+...+.+.+++
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~--~~~~~v~~i~~~~~~--------~~~~~y~-~~--~~E---k~~R~~l~s~v~r 66 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLE--EKGKEVVIISDDSLG--------IDRNDYA-DS--KKE---KEARGSLKSAVER 66 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHH--HTT--EEEE-THHHH---------TTSSS---G--GGH---HHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHH--hcCCEEEEEcccccc--------cchhhhh-ch--hhh---HHHHHHHHHHHHH
Confidence 789999999999999999998753 344467788877663 1111110 11 111 1233556678888
Q ss_pred HHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccCCCceE
Q 011773 255 ALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRI 334 (477)
Q Consensus 255 aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~~pY~I 334 (477)
++....-||+|+.+--+.+|-++..+||+. . ...
T Consensus 67 ~ls~~~iVI~Dd~nYiKg~RYelyclAr~~--------------------------------------------~--~~~ 100 (270)
T PF08433_consen 67 ALSKDTIVILDDNNYIKGMRYELYCLARAY--------------------------------------------G--TTF 100 (270)
T ss_dssp HHTT-SEEEE-S---SHHHHHHHHHHHHHT--------------------------------------------T---EE
T ss_pred hhccCeEEEEeCCchHHHHHHHHHHHHHHc--------------------------------------------C--CCE
Confidence 999998999999999999999888777653 1 123
Q ss_pred EEEEEecCHHHHHHHHHHhhhccccccchhhhhhHHHHHHHh
Q 011773 335 ELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANA 376 (477)
Q Consensus 335 ~lv~V~~d~elav~Rv~~R~~~gGr~Vp~~~ql~~~~rf~~~ 376 (477)
-+|+|.|+.+.|++|-..|... ..++.+.+.....||-.+
T Consensus 101 c~i~~~~~~e~~~~~N~~R~~~--~~~~~e~i~~m~~RfE~P 140 (270)
T PF08433_consen 101 CVIYCDCPLETCLQRNSKRPEP--ERYPEETIDDMIQRFEEP 140 (270)
T ss_dssp EEEEEE--HHHHHHHHHHTT-S----S-HHHHHHHHHH---T
T ss_pred EEEEECCCHHHHHHhhhccCCC--CCCCHHHHHHHHHHhcCC
Confidence 4589999999999999888743 338888888888887654
No 40
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.87 E-value=3e-08 Score=91.78 Aligned_cols=85 Identities=18% Similarity=0.206 Sum_probs=53.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHH
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 249 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~ 249 (477)
...|.+|++.|+|||||||+++.|...+. .++.+..+++.|.+++ .+...++. ..... +......
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~--~~~~~~~~~~~d~~r~------~~~~~~~~--~~~~~-----~~~~~~~ 68 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLK--LKYSNVIYLDGDELRE------ILGHYGYD--KQSRI-----EMALKRA 68 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEEecHHHHh------hcCCCCCC--HHHHH-----HHHHHHH
Confidence 45689999999999999999999998873 2334578898888743 22221111 10000 1111122
Q ss_pred HHHHHHHhCCCcEEEeCCCC
Q 011773 250 SLLVTALNEGRDVIMDGTLS 269 (477)
Q Consensus 250 ~li~~aL~~G~sVIiDgT~s 269 (477)
.+.......|..||.|++..
T Consensus 69 ~l~~~l~~~g~~VI~~~~~~ 88 (176)
T PRK05541 69 KLAKFLADQGMIVIVTTISM 88 (176)
T ss_pred HHHHHHHhCCCEEEEEeCCc
Confidence 23333457899999998764
No 41
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=98.86 E-value=8.1e-09 Score=98.54 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=30.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.+|+|+|++||||||+++.|.+.+| +.+||+|.+
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g-------~~~i~~D~~ 35 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKG-------IPILDADIY 35 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC-------CeEeeCcHH
Confidence 3799999999999999999998763 789999998
No 42
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.86 E-value=2.6e-08 Score=87.98 Aligned_cols=123 Identities=15% Similarity=0.103 Sum_probs=74.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHHHHHH
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT 254 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~li~~ 254 (477)
+|+|+|++||||||+|+.|++.++ +.+++.|.+... . ....... .. . .......+...+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~-------~~~~~~~~i~~e-~-~~~~~~~-~~-~--------~~~i~~~l~~~~~~ 61 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG-------LPYLDTGGIRTE-E-VGKLASE-VA-A--------IPEVRKALDERQRE 61 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC-------CceeccccCCHH-H-HHHHHHH-hc-c--------cHhHHHHHHHHHHH
Confidence 589999999999999999999974 789999966321 1 1111110 00 0 00111222233333
Q ss_pred HHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccCCCceE
Q 011773 255 ALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRI 334 (477)
Q Consensus 255 aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~~pY~I 334 (477)
+..+.++|+||.... |.+ .+...
T Consensus 62 -~~~~~~~Vidg~~~~------------------------~~~--------------------------------~~~~~ 84 (147)
T cd02020 62 -LAKKPGIVLEGRDIG------------------------TVV--------------------------------FPDAD 84 (147)
T ss_pred -HhhCCCEEEEeeeee------------------------eEE--------------------------------cCCCC
Confidence 344567899986531 110 00012
Q ss_pred EEEEEecCHHHHHHHHHHhhhccccccchhhhhhHHHHH
Q 011773 335 ELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRF 373 (477)
Q Consensus 335 ~lv~V~~d~elav~Rv~~R~~~gGr~Vp~~~ql~~~~rf 373 (477)
.+|++++|+++.+.|...|...+++.++.+.........
T Consensus 85 ~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~ 123 (147)
T cd02020 85 LKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIER 123 (147)
T ss_pred EEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 348899999999999999997666778755554544444
No 43
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.84 E-value=1.4e-07 Score=87.68 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=29.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 176 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 176 IlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
|+|.|+|||||||+++.|++.++ +.+|+.|++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~-------~~~i~~~~l 33 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG-------LPHISTGDL 33 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC-------CeEEECcHH
Confidence 78999999999999999999974 789999877
No 44
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.84 E-value=3.3e-08 Score=89.86 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=29.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+|+|+|++||||||+++.|++.++ +.+++.|++
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg-------~~~~~~~~~ 34 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS-------LKLISAGDI 34 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC-------CceecHHHH
Confidence 799999999999999999999874 789998765
No 45
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.82 E-value=6.2e-08 Score=89.57 Aligned_cols=90 Identities=18% Similarity=0.178 Sum_probs=54.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHH
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 250 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~ 250 (477)
..+.+|+|+|+|||||||+++.|+..+. ..+.++.+||.|.++. .+.. +.+..... .....+.+..
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~--~~g~~v~~id~D~~~~------~~~~-~~~~~~~~-----r~~~~~~~~~ 67 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLR--EAGYPVEVLDGDAVRT------NLSK-GLGFSKED-----RDTNIRRIGF 67 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEcCccHHH------HHhc-CCCCChhh-----HHHHHHHHHH
Confidence 3578999999999999999999998863 1223478899998842 2332 11111100 1111111222
Q ss_pred HHHHHHhCCCcEEEeCCCCCHHHH
Q 011773 251 LLVTALNEGRDVIMDGTLSWVPFV 274 (477)
Q Consensus 251 li~~aL~~G~sVIiDgT~s~~~~r 274 (477)
+.......|..||++++...+..+
T Consensus 68 ~a~~~~~~g~~vi~~~~~~~~~~~ 91 (175)
T PRK00889 68 VANLLTRHGVIVLVSAISPYRETR 91 (175)
T ss_pred HHHHHHhCCCEEEEecCCCCHHHH
Confidence 333455679999999885544333
No 46
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=98.82 E-value=4.3e-09 Score=99.77 Aligned_cols=134 Identities=19% Similarity=0.227 Sum_probs=74.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHHHHH
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLV 253 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~li~ 253 (477)
.+|.|+|+.||||||+++.|.+ + |+.+||+|.+. +.+... +.+. +. .+.
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~-------G~~vidaD~i~------~~l~~~---~~~~----------~~----~l~ 49 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-L-------GFPVIDADEIA------HELYEP---GSEG----------YK----ALK 49 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-T-------T-EEEEHHHHH------HHCTSC---TCHH----------HH----HHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-C-------CCCEECccHHH------HHHhhc---CHHH----------HH----HHH
Confidence 4799999999999999999988 4 48999999983 334332 1110 00 111
Q ss_pred HHHhCCCcEEE-eCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccCCCc
Q 011773 254 TALNEGRDVIM-DGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPY 332 (477)
Q Consensus 254 ~aL~~G~sVIi-DgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~~pY 332 (477)
-..|.+++- ||+++++...+.++....... .+|++-+|+-...... ++. .....++
T Consensus 50 --~~FG~~il~~~g~idR~~L~~~vF~d~~~~~-----------------~L~~iihP~I~~~~~~-~~~---~~~~~~~ 106 (180)
T PF01121_consen 50 --ERFGEEILDEDGEIDRKKLAEIVFSDPEKLK-----------------KLENIIHPLIREEIEK-FIK---RNKSEKV 106 (180)
T ss_dssp --HHHGGGGBETTSSB-HHHHHHHHTTSHHHHH-----------------HHHHHHHHHHHHHHHH-HHH---HCHSTSE
T ss_pred --HHcCccccCCCCCChHHHHHHHHhcCHHHHH-----------------HHHHHHhHHHHHHHHH-HHH---hccCCCE
Confidence 123566654 477777666665554433222 2444445443321110 000 0111133
Q ss_pred eE----------------EEEEEecCHHHHHHHHHHhhhcccccc
Q 011773 333 RI----------------ELVGVVCDAYLAVVRGIRRAIMMKRAV 361 (477)
Q Consensus 333 ~I----------------~lv~V~~d~elav~Rv~~R~~~gGr~V 361 (477)
.| .+++|+||++++++|.++|+..+...+
T Consensus 107 ~v~e~pLL~E~~~~~~~D~vi~V~a~~e~ri~Rl~~R~~~~~~~~ 151 (180)
T PF01121_consen 107 VVVEIPLLFESGLEKLCDEVIVVYAPEEIRIKRLMERDGLSEEEA 151 (180)
T ss_dssp EEEE-TTTTTTTGGGGSSEEEEEE--HHHHHHHHHHHHTSTHHHH
T ss_pred EEEEcchhhhhhHhhhhceEEEEECCHHHHHHHHHhhCCCcHHHH
Confidence 33 478999999999999999985444433
No 47
>PRK06761 hypothetical protein; Provisional
Probab=98.81 E-value=2.4e-08 Score=101.00 Aligned_cols=148 Identities=14% Similarity=0.057 Sum_probs=86.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeE-EEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHHH
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAV-VVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL 251 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~v-vIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~l 251 (477)
+.+|+|+|+|||||||+++.|.+.+.. .+-++. +.++|.....+ +.+. ..-......... ......+..+
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~--~g~~v~~~~~~~~~~p~d-----~~~~-~~~~~eer~~~l-~~~~~f~~~l 73 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQ--NGIEVELYLEGNLDHPAD-----YDGV-ACFTKEEFDRLL-SNYPDFKEVL 73 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCc--CceEEEEEecCCCCCchh-----hccc-cCCCHHHHHHHH-HhhhHHHHHH
Confidence 579999999999999999999998741 111111 23344332211 1111 000111111110 1111233446
Q ss_pred HHHHHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccCCC
Q 011773 252 LVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKP 331 (477)
Q Consensus 252 i~~aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~~p 331 (477)
...++..|.++|+-..-..++|++.+-
T Consensus 74 ~~~~~~~g~~~i~~~~~l~~~yr~~~~----------------------------------------------------- 100 (282)
T PRK06761 74 LKNVLKKGDYYLLPYRKIKNEFGDQFS----------------------------------------------------- 100 (282)
T ss_pred HHHHHHcCCeEEEEehhhhHHHhhhhh-----------------------------------------------------
Confidence 666777777777766555554444321
Q ss_pred ceEEEEEEecCHHHHHHHHHHhhhccccccchhhhhhHHHHHHHhHHHhhccCceEEEEecCCCCC
Q 011773 332 YRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVDNARLYCTNAVGG 397 (477)
Q Consensus 332 Y~I~lv~V~~d~elav~Rv~~R~~~gGr~Vp~~~ql~~~~rf~~~~~~y~~lvD~a~lydnn~~~~ 397 (477)
+++++..|+. -||.+|.+.+.+++.+...+|.+...+.|.+.+|||+....
T Consensus 101 ----------~~~~~~~~v~-----~~h~~p~e~i~~R~~~rw~~f~~a~l~~dq~~ifE~s~~~~ 151 (282)
T PRK06761 101 ----------DELFNDISKN-----DIYELPFDKNTELITDRWNDFAEIALEENKVYIFECCFIQN 151 (282)
T ss_pred ----------hhhcccceee-----eeecCCHHHHHHHHHHHHHHHHHHhhccCceEEEeccCcCC
Confidence 1111222211 16788888888899999999999999999999999877644
No 48
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=98.80 E-value=2.2e-08 Score=93.71 Aligned_cols=32 Identities=38% Similarity=0.598 Sum_probs=29.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+|+|+|++||||||+++.|.+ + ++.+||+|.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~-------g~~~i~~D~~ 32 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-L-------GIPVIDADKI 32 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-C-------CCCEEecCHH
Confidence 489999999999999999988 5 4789999998
No 49
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.80 E-value=3.8e-07 Score=88.55 Aligned_cols=68 Identities=22% Similarity=0.289 Sum_probs=51.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhcCCCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEE-Ee
Q 011773 132 TKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVV-VE 210 (477)
Q Consensus 132 ~~~~~~~r~~~~l~ee~~~~~~~~~~~~~~v~~~~~~~~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vv-Id 210 (477)
-+|+.+.+.|..|++.+...... ...|.++.|.|+|||||||+++.|...+.. .+....+ |.
T Consensus 7 ~~~~~~~~~~~~l~~~~~~~~~~---------------~~~~~iigi~G~~GsGKTTl~~~L~~~l~~--~~g~~~v~i~ 69 (229)
T PRK09270 7 YRDEEIEAVHKPLLRRLAALQAE---------------PQRRTIVGIAGPPGAGKSTLAEFLEALLQQ--DGELPAIQVP 69 (229)
T ss_pred cChHhHHHHHHHHHHHHHHHHhc---------------CCCCEEEEEECCCCCCHHHHHHHHHHHhhh--ccCCceEEEe
Confidence 46788899999999987666421 456999999999999999999999887641 1222344 88
Q ss_pred Cccccc
Q 011773 211 ADAFKE 216 (477)
Q Consensus 211 aD~Ike 216 (477)
.|.+..
T Consensus 70 ~D~~~~ 75 (229)
T PRK09270 70 MDGFHL 75 (229)
T ss_pred cccccC
Confidence 888743
No 50
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.79 E-value=9.8e-08 Score=89.74 Aligned_cols=37 Identities=22% Similarity=0.220 Sum_probs=31.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 216 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike 216 (477)
..++++.|+|||||||+++.+...++ ..+++.|.+..
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~-------~~~i~gd~~~~ 39 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS-------AKFIDGDDLHP 39 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC-------CEEECCcccCC
Confidence 45889999999999999999998874 47899999854
No 51
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=98.79 E-value=1.8e-08 Score=96.43 Aligned_cols=33 Identities=36% Similarity=0.460 Sum_probs=28.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
+|.++|++||||||+++.+.. . ++.+||+|.+.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~-------g~~~i~~D~i~ 33 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-L-------GAFGISADRLA 33 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-C-------CCEEEecchHH
Confidence 578999999999999998865 3 47899999983
No 52
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.79 E-value=7.7e-08 Score=91.28 Aligned_cols=95 Identities=17% Similarity=0.169 Sum_probs=61.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhc-CCCCCchhhHHHHHhHhHHHHH
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSS-KGHHDDMLQTAELVHQSSTDAA 248 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~-~g~p~d~~~~ae~v~~~a~~la 248 (477)
..+|.+|.|+|+|||||||+++.|...+. ..+.+..+++.|.++.. +.. .++..+. ....+..+
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~--~~~~~~~~ld~d~~~~~------~~~~~~~~~~~-------~~~~~~~l 85 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALH--ELGVSTYLLDGDNVRHG------LCSDLGFSDAD-------RKENIRRV 85 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHH--hCCCCEEEEcCEeHHhh------hhhcCCcCccc-------HHHHHHHH
Confidence 35689999999999999999999998763 22345789999998421 211 1111110 11222334
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCHHHHHHHHH
Q 011773 249 SSLLVTALNEGRDVIMDGTLSWVPFVEQTIA 279 (477)
Q Consensus 249 ~~li~~aL~~G~sVIiDgT~s~~~~re~lia 279 (477)
..+....+.+|..||.+.....+.+++.+.+
T Consensus 86 ~~~a~~~~~~G~~VI~~~~~~~~~~R~~~r~ 116 (198)
T PRK03846 86 GEVAKLMVDAGLVVLTAFISPHRAERQMVRE 116 (198)
T ss_pred HHHHHHHhhCCCEEEEEeCCCCHHHHHHHHH
Confidence 4456667788998886655555666665543
No 53
>PRK04182 cytidylate kinase; Provisional
Probab=98.78 E-value=1.5e-07 Score=85.98 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=29.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+|+|+|++||||||+++.|++.++ +.++|.|++
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg-------~~~id~~~~ 34 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG-------LKHVSAGEI 34 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC-------CcEecHHHH
Confidence 689999999999999999999974 789997664
No 54
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.77 E-value=1.6e-07 Score=89.86 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=28.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 176 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 176 IlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
|+|.|||||||||+|+.|++.++ +.+|+++++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g-------~~~is~gdl 33 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG-------LPHISTGDL 33 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC-------CCeeehhHH
Confidence 68899999999999999999874 799998765
No 55
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.76 E-value=1.2e-07 Score=90.28 Aligned_cols=83 Identities=16% Similarity=0.232 Sum_probs=57.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcC-CCCCchhhHHHHHhHhHHHHH
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-GHHDDMLQTAELVHQSSTDAA 248 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~-g~p~d~~~~ae~v~~~a~~la 248 (477)
..+|.+|.++|.|||||||+|.+|.+.+. ..+-...++|.|.++ ..|++. |++. ....+..+..
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~--~~G~~~y~LDGDnvR------~gL~~dLgFs~-------edR~eniRRv 84 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLF--AKGYHVYLLDGDNVR------HGLNRDLGFSR-------EDRIENIRRV 84 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHH--HcCCeEEEecChhHh------hcccCCCCCCh-------HHHHHHHHHH
Confidence 45689999999999999999999999874 455568899999984 456542 3321 1123333444
Q ss_pred HHHHHHHHhCCCcEEEeCC
Q 011773 249 SSLLVTALNEGRDVIMDGT 267 (477)
Q Consensus 249 ~~li~~aL~~G~sVIiDgT 267 (477)
.....-..++|.-+|.-..
T Consensus 85 aevAkll~daG~iviva~I 103 (197)
T COG0529 85 AEVAKLLADAGLIVIVAFI 103 (197)
T ss_pred HHHHHHHHHCCeEEEEEee
Confidence 4455666677877766543
No 56
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=98.76 E-value=5.6e-08 Score=93.15 Aligned_cols=33 Identities=33% Similarity=0.547 Sum_probs=29.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.+|.++|++||||||+++.|.. + ++++||+|.+
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~-------g~~vid~D~i 34 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-E-------GFLIVDADQV 34 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-C-------CCeEEeCcHH
Confidence 4799999999999999999986 4 4799999988
No 57
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=98.76 E-value=3e-08 Score=95.77 Aligned_cols=34 Identities=29% Similarity=0.455 Sum_probs=29.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
.++.++|+.||||||+++.+. .+ ++.+||+|.+.
T Consensus 2 ~iVGLTGgiatGKStVs~~f~-~~-------G~~vIDaD~va 35 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFK-AL-------GIPVIDADVVA 35 (225)
T ss_pred eEEEeecccccChHHHHHHHH-Hc-------CCcEecHHHHH
Confidence 478999999999999999998 44 48999999883
No 58
>PRK06547 hypothetical protein; Provisional
Probab=98.74 E-value=1.5e-07 Score=88.42 Aligned_cols=38 Identities=21% Similarity=0.372 Sum_probs=33.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
...|.+|+|+|++||||||+++.|++.+ +..+++.|.+
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~-------~~~~~~~d~~ 49 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART-------GFQLVHLDDL 49 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh-------CCCeecccce
Confidence 3568999999999999999999999986 3778999987
No 59
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=98.74 E-value=5e-08 Score=96.77 Aligned_cols=34 Identities=35% Similarity=0.569 Sum_probs=30.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.+|.|+|++||||||+++.|.+.+ ++.+||+|.+
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~-------G~~viDaD~i 35 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEH-------HIEVIDADLV 35 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc-------CCeEEehHHH
Confidence 479999999999999999999865 4799999998
No 60
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.72 E-value=4.8e-07 Score=86.83 Aligned_cols=33 Identities=27% Similarity=0.230 Sum_probs=29.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
-|+|.|+|||||||+++.|++.++ +.+|+.+++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~-------~~~is~~dl 34 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG-------IPHISTGDM 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcEEECCcc
Confidence 388999999999999999999984 799998766
No 61
>PLN02348 phosphoribulokinase
Probab=98.71 E-value=2.5e-07 Score=97.39 Aligned_cols=150 Identities=17% Similarity=0.151 Sum_probs=83.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCC-------------CCCeEEEeCcccccchHHHHHHhcCCCCC-chhh
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA-------------ATNAVVVEADAFKETDVIYRALSSKGHHD-DMLQ 235 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~-------------~~~~vvIdaD~Ike~d~irk~Ls~~g~p~-d~~~ 235 (477)
...|.+|.|+|++||||||+++.|...++-... ...+.+|..|++...+. ......+... ++.
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr--~~r~~~g~t~ldP~- 122 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDR--TGRKEKGVTALDPR- 122 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCCh--hhHhhcCCccCCcc-
Confidence 467899999999999999999999998751100 13467899999843221 1101101100 110
Q ss_pred HHHHHhHhHHHHHHHHHHHHHhCCCcEE---EeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhh
Q 011773 236 TAELVHQSSTDAASSLLVTALNEGRDVI---MDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVK 312 (477)
Q Consensus 236 ~ae~v~~~a~~la~~li~~aL~~G~sVI---iDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~ 312 (477)
. . -.+++...+. .|++|..+- +|-.-.... . . .. ..|. +=.|+||..-...
T Consensus 123 a--~----dfDll~~~L~-~Lk~G~~I~~PiYDh~tg~~~--~---------~--e~-I~p~-----~VVIVEGlh~L~~ 176 (395)
T PLN02348 123 A--N----NFDLMYEQVK-ALKEGKAVEKPIYNHVTGLLD--P---------P--EL-IEPP-----KILVIEGLHPMYD 176 (395)
T ss_pred c--c----cHHHHHHHHH-HHHCCCcEEeeccccCCCCcC--C---------c--EE-cCCC-----cEEEEechhhccC
Confidence 0 0 1123444444 667788763 332211100 0 0 00 1111 1146788765433
Q ss_pred ccchhhHhhhhhhhccCCCceEEEEEEecCHHHHHHHHHHhhh-ccccccc
Q 011773 313 EGEEDYQQKENRQVFSRKPYRIELVGVVCDAYLAVVRGIRRAI-MMKRAVR 362 (477)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~pY~I~lv~V~~d~elav~Rv~~R~~-~gGr~Vp 362 (477)
+. .+.-+. ..++|++++++...|.+.|+. ..|+...
T Consensus 177 e~-------------lr~l~D-~~IyVd~~~dvrl~RRI~RD~~eRG~S~E 213 (395)
T PLN02348 177 ER-------------VRDLLD-FSIYLDISDDVKFAWKIQRDMAERGHSLE 213 (395)
T ss_pred cc-------------ccccCc-EEEEEECCHHHHHHHHHHhhHhhcCCCHH
Confidence 21 222233 348999999999999999997 4677554
No 62
>PRK04040 adenylate kinase; Provisional
Probab=98.69 E-value=2.6e-07 Score=87.95 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=32.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+|.+|+++|+|||||||+++.|++.+. .++.+++.|++
T Consensus 1 ~~~~i~v~G~pG~GKtt~~~~l~~~l~-----~~~~~~~~g~~ 38 (188)
T PRK04040 1 MMKVVVVTGVPGVGKTTVLNKALEKLK-----EDYKIVNFGDV 38 (188)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhc-----cCCeEEecchH
Confidence 378999999999999999999999872 24778888887
No 63
>PRK07261 topology modulation protein; Provisional
Probab=98.69 E-value=1.1e-07 Score=88.74 Aligned_cols=105 Identities=18% Similarity=0.292 Sum_probs=68.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHHHHHH
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT 254 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~li~~ 254 (477)
-|+|.|+|||||||+++.|+..++ ..+++.|.+.-. + ++...+ . ......+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~-------~~~i~~D~~~~~--------~-~~~~~~-------~----~~~~~~~~~ 54 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN-------CPVLHLDTLHFQ--------P-NWQERD-------D----DDMIADISN 54 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC-------CCeEecCCEEec--------c-ccccCC-------H----HHHHHHHHH
Confidence 378999999999999999998863 678888987311 1 111000 0 112234555
Q ss_pred HHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccCCCceE
Q 011773 255 ALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRI 334 (477)
Q Consensus 255 aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~~pY~I 334 (477)
++.++. +|+||++....+.. . +..+ .
T Consensus 55 ~~~~~~-wIidg~~~~~~~~~-~---------------------------------l~~a------------------d- 80 (171)
T PRK07261 55 FLLKHD-WIIDGNYSWCLYEE-R---------------------------------MQEA------------------D- 80 (171)
T ss_pred HHhCCC-EEEcCcchhhhHHH-H---------------------------------HHHC------------------C-
Confidence 666665 99999987532111 0 0110 1
Q ss_pred EEEEEecCHHHHHHHHHHhhhc-cccc
Q 011773 335 ELVGVVCDAYLAVVRGIRRAIM-MKRA 360 (477)
Q Consensus 335 ~lv~V~~d~elav~Rv~~R~~~-gGr~ 360 (477)
.++++++|.++++.|++.|... .|+.
T Consensus 81 ~vI~Ld~p~~~~~~R~lkR~~~~rg~~ 107 (171)
T PRK07261 81 QIIFLNFSRFNCLYRAFKRYLKYRGKT 107 (171)
T ss_pred EEEEEcCCHHHHHHHHHHHHHHHcCCc
Confidence 2589999999999999999874 4543
No 64
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.69 E-value=1.8e-07 Score=86.60 Aligned_cols=111 Identities=14% Similarity=0.071 Sum_probs=67.6
Q ss_pred EcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHHHHHH-HHh
Q 011773 179 GGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT-ALN 257 (477)
Q Consensus 179 aGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~li~~-aL~ 257 (477)
.|+|||||||+++.|+..++ .++|+.|.+.....+++.+.+ .+..... .......+...... ...
T Consensus 1 ~G~sGsGKSTla~~la~~l~-------~~~~~~d~~~~~~~~~~~~~g--~~~~~~~-----~~~~~~~~~~~~~~~~~~ 66 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLH-------AAFLDGDFLHPRRNIEKMASG--EPLNDDD-----RKPWLQALNDAAFAMQRT 66 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhC-------CeEEeCccCCchhhhccccCC--CCCChhh-----HHHHHHHHHHHHHHHHHc
Confidence 49999999999999999974 689999987433223333222 2221100 00111111112222 233
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccCCCceEEEE
Q 011773 258 EGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRIELV 337 (477)
Q Consensus 258 ~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~~pY~I~lv 337 (477)
.|.+||+ +|+..+.+++.+. ..+..+.+|
T Consensus 67 ~~~~viv-~s~~~~~~r~~~~--------------------------------------------------~~~~~~~~v 95 (163)
T PRK11545 67 NKVSLIV-CSALKKHYRDLLR--------------------------------------------------EGNPNLSFI 95 (163)
T ss_pred CCceEEE-EecchHHHHHHHH--------------------------------------------------ccCCCEEEE
Confidence 4666666 8888776655321 122336678
Q ss_pred EEecCHHHHHHHHHHhh
Q 011773 338 GVVCDAYLAVVRGIRRA 354 (477)
Q Consensus 338 ~V~~d~elav~Rv~~R~ 354 (477)
+++||+++..+|...|.
T Consensus 96 ~l~a~~~~l~~Rl~~R~ 112 (163)
T PRK11545 96 YLKGDFDVIESRLKARK 112 (163)
T ss_pred EEECCHHHHHHHHHhcc
Confidence 99999999999999996
No 65
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.69 E-value=7.3e-07 Score=79.64 Aligned_cols=33 Identities=33% Similarity=0.359 Sum_probs=29.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 176 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 176 IlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
|+|.|+|||||||+++.|++.++ +.++++|.+.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~-------~~~~~~d~~~ 34 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG-------LPFVDLDELI 34 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC-------CCEEEchHHH
Confidence 78999999999999999999985 6799999873
No 66
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.68 E-value=2.8e-07 Score=87.06 Aligned_cols=147 Identities=16% Similarity=0.182 Sum_probs=75.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCC----CeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhH--HHHH
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAAT----NAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSS--TDAA 248 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~----~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a--~~la 248 (477)
+|.|+|++||||||+|+.|...+. ..+- ...++..|.+-........-......... .+..+ ...+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~--~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~------~~p~a~d~~~l 72 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN--KRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNF------DHPDAFDFDLL 72 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT--TCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSST------TSGGGBSHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC--ccCcCccceeEEEeecccccccchhhHhhccccccCC------CCccccCHHHH
Confidence 689999999999999999999874 1111 25677788773211111110000000000 01111 1233
Q ss_pred HHHHHHHHhCCCcEE---EeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhh
Q 011773 249 SSLLVTALNEGRDVI---MDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQ 325 (477)
Q Consensus 249 ~~li~~aL~~G~sVI---iDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~ 325 (477)
...+. .|++|.++- +|-....+. .. ..... +..+ .++||.+-...+.
T Consensus 73 ~~~l~-~L~~g~~i~~p~yd~~~~~~~------------~~-~~~~~-~~~i----vIvEG~~~l~~~~----------- 122 (194)
T PF00485_consen 73 KEDLK-ALKNGGSIEIPIYDFSTGDRD------------PW-IIIIS-PSDI----VIVEGIYALYDEE----------- 122 (194)
T ss_dssp HHHHH-HHHTTSCEEEEEEETTTTEEE------------EE-EEEEE-S-SE----EEEEETTTTSSHC-----------
T ss_pred HHHHH-HHhCCCcccccccccccccce------------ee-eeecC-CCCE----EEEcccceeeeee-----------
Confidence 44444 466777763 342211110 00 00011 1111 4679887654321
Q ss_pred hccCCCceEEEEEEecCHHHHHHHHHHhhh-ccccccc
Q 011773 326 VFSRKPYRIELVGVVCDAYLAVVRGIRRAI-MMKRAVR 362 (477)
Q Consensus 326 ~~~~~pY~I~lv~V~~d~elav~Rv~~R~~-~gGr~Vp 362 (477)
.+.-+.+ .|+|+++.+++..|.+.|+. ..|+...
T Consensus 123 --l~~l~D~-~ifld~~~~~~l~Rri~RD~~~rG~~~~ 157 (194)
T PF00485_consen 123 --LRDLFDL-KIFLDADEDLRLERRIQRDVAERGRSPE 157 (194)
T ss_dssp --HGGG-SE-EEEEEE-HHHHHHHHHHHHHHHS-S-HH
T ss_pred --eccccee-EEEecccHHHHHHHHhhhhccccCCcce
Confidence 2223344 37899999999999999988 5788764
No 67
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=98.67 E-value=4.5e-07 Score=87.20 Aligned_cols=36 Identities=36% Similarity=0.541 Sum_probs=31.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+.|.+|.|+|++||||||+++.|.. + ++.++|+|.+
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~-~-------g~~v~d~D~i 38 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAE-M-------GCELFEADRV 38 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-C-------CCeEEeccHH
Confidence 4578999999999999999999986 4 4799999977
No 68
>PRK06217 hypothetical protein; Validated
Probab=98.67 E-value=7.7e-08 Score=90.07 Aligned_cols=34 Identities=15% Similarity=0.244 Sum_probs=30.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
-|+|.|+|||||||+++.|++.++ ..+++.|.+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~-------~~~~~~D~~~ 36 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD-------IPHLDTDDYF 36 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC-------CcEEEcCcee
Confidence 489999999999999999999974 7899999884
No 69
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=98.67 E-value=2e-07 Score=88.93 Aligned_cols=150 Identities=21% Similarity=0.275 Sum_probs=91.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHH
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 249 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~ 249 (477)
.++|.+|++-|+|||||-|.+..+.+.++ +.|++++++ +|.+....+ + + ..
T Consensus 5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~-------ftHlSaGdL-----LR~E~~~~g-s-------e---------~g 55 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYG-------FTHLSAGDL-----LRAEIASAG-S-------E---------RG 55 (195)
T ss_pred ccCCCEEEEEcCCCCCcchHHHHHHHHcC-------ceeecHHHH-----HHHHHcccc-C-------h---------HH
Confidence 46788999999999999999999999984 799998887 244443321 0 0 12
Q ss_pred HHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccC
Q 011773 250 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR 329 (477)
Q Consensus 250 ~li~~aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~ 329 (477)
.++...+++|.-|-.+-|++ .++ +..++.+. ..|| +++||...+++. ..+++....
T Consensus 56 ~~I~~~i~~G~iVP~ei~~~---LL~---~am~~~~~-----~~~f-------LIDGyPR~~~q~------~~fe~~i~~ 111 (195)
T KOG3079|consen 56 ALIKEIIKNGDLVPVEITLS---LLE---EAMRSSGD-----SNGF-------LIDGYPRNVDQL------VEFERKIQG 111 (195)
T ss_pred HHHHHHHHcCCcCcHHHHHH---HHH---HHHHhcCC-----CCeE-------EecCCCCChHHH------HHHHHHhcC
Confidence 36777777777776664432 111 11111110 0112 345666655543 222222222
Q ss_pred CCceEEEEEEecCHHHHHHHHHHhhhccccccc-hhhhhhHHHHHH
Q 011773 330 KPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVR-VNSQLKSHKRFA 374 (477)
Q Consensus 330 ~pY~I~lv~V~~d~elav~Rv~~R~~~gGr~Vp-~~~ql~~~~rf~ 374 (477)
.+ -.+++++|+.++.+.|...|....+|.-. ++++..|.+-|.
T Consensus 112 ~~--~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR~et~~ 155 (195)
T KOG3079|consen 112 DP--DFVLFFDCPEETMLKRLLHRGQSNSRSDDNEESIKKRLETYN 155 (195)
T ss_pred CC--CEEEEEeCCHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHH
Confidence 22 12478999999999999999997666655 555554444443
No 70
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.66 E-value=1.7e-07 Score=104.02 Aligned_cols=94 Identities=13% Similarity=0.122 Sum_probs=65.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHH
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 249 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~ 249 (477)
..+|.+|+|+|.|||||||+|+.|+..+.+ .+.++.+|+.|.++. .+.+ +.+.. .+. ....+..+.
T Consensus 457 ~~~~~~i~~~G~~gsGKst~a~~l~~~l~~--~~~~~~~l~~D~~r~------~l~~-~~~~~----~~~-r~~~~~~l~ 522 (632)
T PRK05506 457 GQKPATVWFTGLSGSGKSTIANLVERRLHA--LGRHTYLLDGDNVRH------GLNR-DLGFS----DAD-RVENIRRVA 522 (632)
T ss_pred CCCcEEEEecCCCCchHHHHHHHHHHHHHH--cCCCEEEEcChhhhh------ccCC-CCCCC----HHH-HHHHHHHHH
Confidence 346999999999999999999999998742 234679999999853 3433 11111 111 223334444
Q ss_pred HHHHHHHhCCCcEEEeCCCCCHHHHHHH
Q 011773 250 SLLVTALNEGRDVIMDGTLSWVPFVEQT 277 (477)
Q Consensus 250 ~li~~aL~~G~sVIiDgT~s~~~~re~l 277 (477)
.+....+++|.+||+|.++..+..++.+
T Consensus 523 ~~a~~~~~~G~~Vivda~~~~~~~R~~~ 550 (632)
T PRK05506 523 EVARLMADAGLIVLVSFISPFREERELA 550 (632)
T ss_pred HHHHHHHhCCCEEEEECCCCCHHHHHHH
Confidence 5666677999999999998887776533
No 71
>PRK14530 adenylate kinase; Provisional
Probab=98.65 E-value=7e-07 Score=85.66 Aligned_cols=33 Identities=27% Similarity=0.250 Sum_probs=29.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.|+|.|+|||||||+++.|++.++ +.+|+.|++
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~-------~~~i~~g~~ 37 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFG-------VEHVTTGDA 37 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CeEEeccHH
Confidence 478899999999999999999984 789998877
No 72
>PLN02422 dephospho-CoA kinase
Probab=98.65 E-value=1.4e-07 Score=93.13 Aligned_cols=33 Identities=36% Similarity=0.454 Sum_probs=29.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.+|+++|++||||||+++.|.+ + ++.+||+|.+
T Consensus 2 ~~igltG~igsGKstv~~~l~~-~-------g~~~idaD~~ 34 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFKS-S-------GIPVVDADKV 34 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-C-------CCeEEehhHH
Confidence 3799999999999999999984 4 4799999998
No 73
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.65 E-value=3.5e-07 Score=85.89 Aligned_cols=34 Identities=32% Similarity=0.555 Sum_probs=30.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
+|+|+|++||||||+++.|.+.. ++.++|+|.+.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~-------~~~~i~~D~~~ 34 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY-------HFPVIDADKIA 34 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc-------CCeEEeCCHHH
Confidence 48999999999999999998874 47899999994
No 74
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.64 E-value=2.8e-07 Score=87.68 Aligned_cols=40 Identities=30% Similarity=0.593 Sum_probs=35.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.+|.+|.|+|+|||||||+++.|...++ +..+.+|+.|.+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~----~~~~~~i~~D~~ 43 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG----DESIAVIPQDSY 43 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC----CCceEEEeCCcc
Confidence 5689999999999999999999999873 345788999987
No 75
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.63 E-value=1.1e-06 Score=79.78 Aligned_cols=38 Identities=26% Similarity=0.218 Sum_probs=33.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
..|.+|+|.|++||||||+++.|++.++ ..++|.|.+.
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~-------~~~~d~d~~~ 39 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLG-------YDFIDTDHLI 39 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhC-------CCEEEChHHH
Confidence 3577999999999999999999999984 6889999873
No 76
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.63 E-value=1.4e-07 Score=89.70 Aligned_cols=86 Identities=27% Similarity=0.513 Sum_probs=54.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhcc-c--------------cCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhh
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESF-W--------------SGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQ 235 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~-~--------------~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~ 235 (477)
..|.+|+|+|||||||||+++.|.+.++ . +..|.++.+|+.++|.. .+.. + .+..
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~------~i~~-~---~f~e 71 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKK------GIAD-G---EFLE 71 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHH------HHHc-C---CeEE
Confidence 3589999999999999999999988752 0 11133455666555521 1221 1 2222
Q ss_pred HHHHHhHhHHHHHHHHHHHHHhCCCcEEEeCC
Q 011773 236 TAELVHQSSTDAASSLLVTALNEGRDVIMDGT 267 (477)
Q Consensus 236 ~ae~v~~~a~~la~~li~~aL~~G~sVIiDgT 267 (477)
+++. +...+....+.+...+++|+.+|+|..
T Consensus 72 ~~~~-~g~~YGt~~~~i~~~~~~g~~~i~d~~ 102 (186)
T PRK14737 72 WAEV-HDNYYGTPKAFIEDAFKEGRSAIMDID 102 (186)
T ss_pred EEEE-CCeeecCcHHHHHHHHHcCCeEEEEcC
Confidence 2221 334445555678889999999999964
No 77
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.62 E-value=3.2e-07 Score=100.96 Aligned_cols=100 Identities=16% Similarity=0.156 Sum_probs=66.2
Q ss_pred ccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHH
Q 011773 168 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDA 247 (477)
Q Consensus 168 ~~~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~l 247 (477)
+..++|.+|+|+|+|||||||+++.|+..+++ ..+..+.++|.|.++ +.+++. . .+ . ..........
T Consensus 387 ~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~-~~g~~~~~lD~D~vr------~~l~ge--~-~f--~-~~er~~~~~~ 453 (568)
T PRK05537 387 PRHKQGFTVFFTGLSGAGKSTIAKALMVKLME-MRGRPVTLLDGDVVR------KHLSSE--L-GF--S-KEDRDLNILR 453 (568)
T ss_pred cccCCCeEEEEECCCCChHHHHHHHHHHHhhh-ccCceEEEeCCcHHH------HhccCC--C-CC--C-HHHHHHHHHH
Confidence 33577899999999999999999999999852 122346899999873 345432 1 01 1 1111122222
Q ss_pred HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHH
Q 011773 248 ASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAM 280 (477)
Q Consensus 248 a~~li~~aL~~G~sVIiDgT~s~~~~re~lial 280 (477)
+..+....++.|..+|++.++..+..++...++
T Consensus 454 l~~~a~~v~~~Gg~vI~~~~~p~~~~R~~nr~l 486 (568)
T PRK05537 454 IGFVASEITKNGGIAICAPIAPYRATRREVREM 486 (568)
T ss_pred HHHHHHHHHhCCCEEEEEeCCchHHHHHHHHHH
Confidence 333556688899999999999887766655433
No 78
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=98.61 E-value=7.1e-07 Score=92.60 Aligned_cols=40 Identities=23% Similarity=0.194 Sum_probs=31.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
+.+++|+|||||||+++.|...+.. ..+-.+.+++.|++-
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~-~~g~~v~~~~~Dd~i 40 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRR-ERGWAVAVITYDDII 40 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHh-ccCCeEEEEcccccc
Confidence 4689999999999999999876521 123457899999974
No 79
>PRK15453 phosphoribulokinase; Provisional
Probab=98.61 E-value=1.2e-07 Score=96.08 Aligned_cols=44 Identities=32% Similarity=0.404 Sum_probs=35.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 216 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike 216 (477)
+++.+|.|+|+|||||||+++.|...++ ..+.++.+|+.|.+..
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~--~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR--RENINAAVVEGDSFHR 46 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh--hcCCCeEEEecccccc
Confidence 4578999999999999999999988763 1223578999999964
No 80
>PRK02496 adk adenylate kinase; Provisional
Probab=98.61 E-value=1.6e-06 Score=80.86 Aligned_cols=33 Identities=21% Similarity=0.208 Sum_probs=28.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
-++|.|+|||||||+++.|++.++ +.+++.|++
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~-------~~~i~~~~~ 35 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLH-------IPHISTGDI 35 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcEEEhHHH
Confidence 478899999999999999999874 788988766
No 81
>PRK08118 topology modulation protein; Reviewed
Probab=98.61 E-value=2e-07 Score=86.83 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=29.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
-|+|.|+|||||||+|+.|.+.++ ..+++.|.+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~-------~~~~~lD~l 35 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN-------IPVHHLDAL 35 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CCceecchh
Confidence 378999999999999999999974 788888877
No 82
>PRK13946 shikimate kinase; Provisional
Probab=98.60 E-value=1.1e-06 Score=82.52 Aligned_cols=37 Identities=30% Similarity=0.246 Sum_probs=33.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
..+..|+|.|++||||||+++.|++.++ +.++|.|..
T Consensus 8 ~~~~~I~l~G~~GsGKsti~~~LA~~Lg-------~~~id~D~~ 44 (184)
T PRK13946 8 LGKRTVVLVGLMGAGKSTVGRRLATMLG-------LPFLDADTE 44 (184)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHcC-------CCeECcCHH
Confidence 3567899999999999999999999985 689999975
No 83
>PRK13947 shikimate kinase; Provisional
Probab=98.60 E-value=2.1e-06 Score=78.56 Aligned_cols=33 Identities=27% Similarity=0.286 Sum_probs=30.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 176 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 176 IlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
|+|.|+|||||||+++.|++.++ +.+||.|.+.
T Consensus 4 I~l~G~~GsGKst~a~~La~~lg-------~~~id~d~~~ 36 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTLS-------FGFIDTDKEI 36 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC-------CCEEECchhh
Confidence 89999999999999999999985 6899999874
No 84
>PRK14528 adenylate kinase; Provisional
Probab=98.60 E-value=6.3e-07 Score=84.65 Aligned_cols=42 Identities=12% Similarity=0.010 Sum_probs=31.9
Q ss_pred EEEEecCHHHHHHHHHHhhhccccccc-hhhhhhHHHHHHHhH
Q 011773 336 LVGVVCDAYLAVVRGIRRAIMMKRAVR-VNSQLKSHKRFANAF 377 (477)
Q Consensus 336 lv~V~~d~elav~Rv~~R~~~gGr~Vp-~~~ql~~~~rf~~~~ 377 (477)
+|+++||+++++.|...|....||.-. .+.+.+|...|....
T Consensus 111 vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~~ 153 (186)
T PRK14528 111 AINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKT 153 (186)
T ss_pred EEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHHh
Confidence 578899999999999999887787754 666666655555444
No 85
>PRK00625 shikimate kinase; Provisional
Probab=98.58 E-value=1.6e-06 Score=81.74 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=30.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
.|+|+|.|||||||+++.|++.++ +.+||.|.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~-------~~~id~D~~I 35 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS-------LPFFDTDDLI 35 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CCEEEhhHHH
Confidence 489999999999999999999984 7899999873
No 86
>PRK03839 putative kinase; Provisional
Probab=98.57 E-value=2.9e-07 Score=85.44 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=30.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.|+|.|+|||||||+++.|++.++ +.++|.|++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~-------~~~id~d~~ 34 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG-------YEYVDLTEF 34 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcEEehhhh
Confidence 589999999999999999999984 789999987
No 87
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.57 E-value=2.1e-07 Score=88.94 Aligned_cols=86 Identities=29% Similarity=0.482 Sum_probs=62.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccc--------------cCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHH
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFW--------------SGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTA 237 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~--------------~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~a 237 (477)
++.+++|.||||+||||+.+.|.+...+ +-.|.++.||+.++|.+ +.+. +++.+++
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~-------~i~~---~~fLE~a 72 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEE-------LIER---DEFLEWA 72 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCcCCceeEeCCHHHHHH-------HHhc---CCcEEEE
Confidence 5889999999999999999999987654 23555688888888832 2221 1344444
Q ss_pred HHHhHhHHHHHHHHHHHHHhCCCcEEEeCCC
Q 011773 238 ELVHQSSTDAASSLLVTALNEGRDVIMDGTL 268 (477)
Q Consensus 238 e~v~~~a~~la~~li~~aL~~G~sVIiDgT~ 268 (477)
+. +...+......++.+++.|.+||+|-..
T Consensus 73 ~~-~gnyYGT~~~~ve~~~~~G~~vildId~ 102 (191)
T COG0194 73 EY-HGNYYGTSREPVEQALAEGKDVILDIDV 102 (191)
T ss_pred EE-cCCcccCcHHHHHHHHhcCCeEEEEEeh
Confidence 44 4445555566889999999999999654
No 88
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.55 E-value=7e-07 Score=83.82 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=22.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
..+++|.|||||||||+++.|+..+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 4689999999999999999998875
No 89
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.54 E-value=1.9e-07 Score=93.99 Aligned_cols=40 Identities=28% Similarity=0.417 Sum_probs=32.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 216 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike 216 (477)
+|.++|++||||||+++.+.+.++ ..+..+.+|+.|.+..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~--~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA--REGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH--hcCCceEEEecccccc
Confidence 578999999999999999998763 1223578999999954
No 90
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.53 E-value=1.8e-06 Score=96.51 Aligned_cols=162 Identities=17% Similarity=0.147 Sum_probs=94.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCC-chhhHHHHHhHhHHHHHH
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHD-DMLQTAELVHQSSTDAAS 249 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~-d~~~~ae~v~~~a~~la~ 249 (477)
....+++|.|.||+||||+++.|++.+.|. +-++.+++.|.+ ++.+...+... ++......-...+..++.
T Consensus 213 ~~~~~~~~vglp~~GKStia~~L~~~l~~~--~~~~~~~~~~~~------rr~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 284 (664)
T PTZ00322 213 MGSLIVIMVGLPGRGKTYVARQIQRYFQWN--GLQSRIFIHQAY------RRRLERRGGAVSSPTGAAEVEFRIAKAIAH 284 (664)
T ss_pred ccceeEEecccCCCChhHHHHHHHHHHHhc--CCCcEEEccchh------HhhhccCCCCcCCCCCHHHHHHHHHHHHHH
Confidence 456799999999999999999999998762 112344444444 44454222111 111111111122223333
Q ss_pred HHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccC
Q 011773 250 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR 329 (477)
Q Consensus 250 ~li~~aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~ 329 (477)
.+..-.+..|..+|+|+|..+...+..+++.+++. ...
T Consensus 285 d~~~~v~~~GgvaI~DatN~t~~rR~~~~~~~~~~------------------------------------------~~~ 322 (664)
T PTZ00322 285 DMTTFICKTDGVAVLDGTNTTHARRMALLRAIRET------------------------------------------GLI 322 (664)
T ss_pred HHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHc------------------------------------------CCC
Confidence 34444666788999999999987766665554321 122
Q ss_pred CCceEEEEEEecCHHHHHHHHHHhhhccccccchhhhhhHHHHHHHhHHHhhc
Q 011773 330 KPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCE 382 (477)
Q Consensus 330 ~pY~I~lv~V~~d~elav~Rv~~R~~~gGr~Vp~~~ql~~~~rf~~~~~~y~~ 382 (477)
.|..|.+|-+.|+....+.|.+.|........+.+...+.++++...-..|..
T Consensus 323 ~~~~vifle~vc~~~~~i~~ni~r~~~~~~~~~e~~~~~~~~~~~~~~~~Ye~ 375 (664)
T PTZ00322 323 RMTRVVFVEVVNNNSETIRRNVLRAKEMFPGAPEDFVDRYYEVIEQLEAVYKS 375 (664)
T ss_pred ccCcEEEEEEeCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhccc
Confidence 34456667777887777888888876554444444433344444444444443
No 91
>PRK08233 hypothetical protein; Provisional
Probab=98.53 E-value=1.3e-06 Score=80.23 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=24.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
++.+|+|+|++||||||+++.|++.++
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 468999999999999999999999873
No 92
>PRK07667 uridine kinase; Provisional
Probab=98.52 E-value=8.3e-07 Score=84.20 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=34.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
..+.+|.|+|++||||||+++.|.+.+. ..+.+..+|+.|++
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~~l~--~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKENMK--QEGIPFHIFHIDDY 56 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEEEcCcc
Confidence 4458999999999999999999998763 22345789999997
No 93
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.51 E-value=4.9e-06 Score=76.44 Aligned_cols=35 Identities=26% Similarity=0.289 Sum_probs=30.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
..|+|.|++||||||+++.|++.++ +.++|.|.+.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg-------~~~~d~D~~~ 37 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG-------YRFVDTDQWL 37 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC-------CCEEEccHHH
Confidence 3578889999999999999999985 6899999884
No 94
>PRK08356 hypothetical protein; Provisional
Probab=98.50 E-value=5.1e-06 Score=78.69 Aligned_cols=32 Identities=28% Similarity=0.243 Sum_probs=26.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcc
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 213 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~ 213 (477)
.+|+|+|||||||||+++.|. .++ +.+|+..+
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~-~~g-------~~~is~~~ 37 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE-EKG-------FCRVSCSD 37 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCC-------CcEEeCCC
Confidence 578999999999999999995 443 55777665
No 95
>PRK13948 shikimate kinase; Provisional
Probab=98.48 E-value=2.6e-06 Score=80.98 Aligned_cols=39 Identities=23% Similarity=0.400 Sum_probs=34.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
++.|..|+|.|++||||||+++.|++.++ ..+||+|.+.
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg-------~~~iD~D~~i 45 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALM-------LHFIDTDRYI 45 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcC-------CCEEECCHHH
Confidence 46689999999999999999999999985 6899999764
No 96
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.47 E-value=5.6e-07 Score=84.67 Aligned_cols=144 Identities=19% Similarity=0.212 Sum_probs=78.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHHHHHH
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT 254 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~li~~ 254 (477)
+|+|+|++||||||+++.|+..+. ..+.++.+|+.|.|-... .......+..+.+ .. . -...+.+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~--~~~~~~~~i~~Ddf~~~~--~~~~~~~g~~d~~-~~--~----d~~~l~~~l~~ 69 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR--VNGIGPVVISLDDYYVPR--KTPRDEDGNYDFE-SI--L----DLDLLNKNLHD 69 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH--HcCCCEEEEehhhcccCc--ccccccCCCCCCC-cc--c----cHHHHHHHHHH
Confidence 589999999999999999998863 223467899999984321 0011111111111 00 0 11233344444
Q ss_pred HHhCCCcEEE---eCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccCCC
Q 011773 255 ALNEGRDVIM---DGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKP 331 (477)
Q Consensus 255 aL~~G~sVIi---DgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~~p 331 (477)
+.+|..+-+ |-.-..+. ........ ...+ .++||.+-...+ .+.-
T Consensus 70 -l~~~~~~~~p~yd~~~~~~~------------~~~~~~~~-~~~v----IIvEG~~~l~~~--------------l~~~ 117 (179)
T cd02028 70 -LLNGKEVELPIYDFRTGKRR------------GYRKLKLP-PSGV----VILEGIYALNER--------------LRSL 117 (179)
T ss_pred -HHCCCeeecccceeECCccC------------CCceEEeC-CCCE----EEEecHHhcCHh--------------HHhh
Confidence 556665532 21111100 00000011 1111 577888875322 1111
Q ss_pred ceEEEEEEecCHHH-HHHHHHHhhh-ccccccc
Q 011773 332 YRIELVGVVCDAYL-AVVRGIRRAI-MMKRAVR 362 (477)
Q Consensus 332 Y~I~lv~V~~d~el-av~Rv~~R~~-~gGr~Vp 362 (477)
+.+ .++|+++.++ +..|.+.|+. .+|+.+.
T Consensus 118 ~d~-~I~vd~~~~~~rl~rri~RD~~~rg~~~~ 149 (179)
T cd02028 118 LDI-RVAVSGGVHLNRLLRRVVRDIQFRGYSAE 149 (179)
T ss_pred cCE-EEEEeCCccHHHHHHHHHHhHHhhCCCHH
Confidence 333 3899999998 9999999997 7888877
No 97
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.47 E-value=6.1e-07 Score=98.75 Aligned_cols=141 Identities=19% Similarity=0.231 Sum_probs=78.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHH
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 250 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~ 250 (477)
..+.+|.|+|||||||||+++.|+..++ +..+|.-|.+.... +.+.. ..+++. . .. ...+..
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglLp------~vgvIsmDdy~~~~---~~i~~--nfD~P~-a--~D----~d~L~e 124 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVISMDNYNDSS---RIIDG--NFDDPR-L--TD----YDTLLD 124 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhCC------CcEEEEEcceecch---hhhCc--cCCChh-h--cc----hhHHHH
Confidence 4579999999999999999999998763 46788888884221 11111 111111 0 00 112222
Q ss_pred HHHHHHhCCCcE---EEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhc
Q 011773 251 LLVTALNEGRDV---IMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVF 327 (477)
Q Consensus 251 li~~aL~~G~sV---IiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~ 327 (477)
.+ ..|++|..+ ++|-....+. . . .....+...| .++||++-...+
T Consensus 125 nL-~~Lr~GksV~iPiYDf~t~~r~--~-------~----~~i~v~p~~V----VIVEGIyaL~~~-------------- 172 (656)
T PLN02318 125 NI-HDLKAGKSVQVPIYDFKSSSRV--G-------Y----RTLEVPSSRI----VIIEGIYALSEK-------------- 172 (656)
T ss_pred HH-HHHhCCCceecCccccccCccc--C-------C----ceeecCCCcE----EEEechhhccHh--------------
Confidence 33 346678775 3332211110 0 0 0000111111 577999876322
Q ss_pred cCCCceEEEEEEecCHHHHHHHHHHhhh-ccccccc
Q 011773 328 SRKPYRIELVGVVCDAYLAVVRGIRRAI-MMKRAVR 362 (477)
Q Consensus 328 ~~~pY~I~lv~V~~d~elav~Rv~~R~~-~gGr~Vp 362 (477)
.+..+.+ .|+|++|.++.+.|.+.|+. ..|+.+.
T Consensus 173 Lr~LlDl-kIFVDtdvDirL~RRI~RD~~eRGrs~E 207 (656)
T PLN02318 173 LRPLLDL-RVSVTGGVHFDLVKRVLRDIQRAGQEPE 207 (656)
T ss_pred HHhhCCE-EEEEcCCccHHHHHHHHHHHHHhCCCHH
Confidence 3334444 38899888888888888876 7788654
No 98
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.46 E-value=5.9e-07 Score=82.88 Aligned_cols=24 Identities=38% Similarity=0.771 Sum_probs=22.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
.+|+|.||+||||||+++.|...+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 589999999999999999999865
No 99
>PLN02674 adenylate kinase
Probab=98.45 E-value=4.3e-06 Score=83.18 Aligned_cols=37 Identities=22% Similarity=0.211 Sum_probs=31.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+.+.-|+|.|||||||||+++.|++.++ +.+|+++++
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~-------~~his~Gdl 65 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYC-------LCHLATGDM 65 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcC-------CcEEchhHH
Confidence 3345688899999999999999999984 799998877
No 100
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.45 E-value=3.3e-06 Score=82.24 Aligned_cols=36 Identities=28% Similarity=0.406 Sum_probs=32.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
++.+|.|.||+||||||+++.|+++++ +.++++|.+
T Consensus 1 ~~~~i~i~G~~GsGKst~~~~la~~~~-------~~~~~~g~~ 36 (217)
T TIGR00017 1 MAMIIAIDGPSGAGKSTVAKAVAEKLG-------YAYLDSGAM 36 (217)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC-------CceeeCchH
Confidence 467899999999999999999999884 678888877
No 101
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=98.44 E-value=5.2e-06 Score=77.69 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
+|++.|++||||||+++.|.+.++
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~ 24 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLG 24 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998754
No 102
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.44 E-value=8.9e-07 Score=84.91 Aligned_cols=88 Identities=24% Similarity=0.382 Sum_probs=51.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccc---------------cCCCCCeEEEeCcccccchHHHHHHhcCCCCCchh
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFW---------------SGAATNAVVVEADAFKETDVIYRALSSKGHHDDML 234 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~---------------~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~ 234 (477)
..+|.+|+|.||+||||||+++.|.+.... ...+.++.+|+.+.|. +.+.. + .+.
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~------~~~~~-~---~~l 79 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFR------EMISQ-N---ELL 79 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHH------HHHHc-C---CcE
Confidence 357899999999999999999999764210 0112234445555442 11211 1 111
Q ss_pred hHHHHHhHhHHHHHHHHHHHHHhCCCcEEEeCCC
Q 011773 235 QTAELVHQSSTDAASSLLVTALNEGRDVIMDGTL 268 (477)
Q Consensus 235 ~~ae~v~~~a~~la~~li~~aL~~G~sVIiDgT~ 268 (477)
.+.+. +...+......+..++++|+.+|++.+.
T Consensus 80 e~~~~-~g~~YGt~~~~i~~~~~~g~~vi~~~~~ 112 (206)
T PRK14738 80 EWAEV-YGNYYGVPKAPVRQALASGRDVIVKVDV 112 (206)
T ss_pred EEEEE-cCceecCCHHHHHHHHHcCCcEEEEcCH
Confidence 11111 2233333445778889999999998754
No 103
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.44 E-value=2.7e-07 Score=88.19 Aligned_cols=35 Identities=26% Similarity=0.343 Sum_probs=30.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
+|.|+|++||||||+|+.|++.+. ++.+|+.|.+-
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~------~~~~i~~Ddf~ 35 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP------NCCVIHQDDFF 35 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC------CCeEEcccccc
Confidence 588999999999999999999873 57899999883
No 104
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.43 E-value=2.7e-05 Score=71.79 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
++|++.|++||||||+++.|++.+
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999999999887
No 105
>PRK07429 phosphoribulokinase; Provisional
Probab=98.42 E-value=3.1e-06 Score=87.42 Aligned_cols=42 Identities=29% Similarity=0.418 Sum_probs=34.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
..+|.+|.|+|++||||||+++.|...++ .....+|..|.+.
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~----~~~~~vi~~Dd~~ 46 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLG----EELVTVICTDDYH 46 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhc----cCceEEEEecccc
Confidence 46799999999999999999999998874 2235678888884
No 106
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.41 E-value=4.5e-06 Score=79.63 Aligned_cols=40 Identities=28% Similarity=0.556 Sum_probs=33.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+.+.+|.|+|+|||||||+++.|...+. ..++.+++.|.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~----~~~~~~i~~D~~ 43 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG----KLEIVIISQDNY 43 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc----ccCCeEeccccc
Confidence 5678999999999999999999998763 135678888887
No 107
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=98.40 E-value=1e-05 Score=79.55 Aligned_cols=104 Identities=19% Similarity=0.248 Sum_probs=60.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCC---ch-hhHHHHHhHh-H
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHD---DM-LQTAELVHQS-S 244 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~---d~-~~~ae~v~~~-a 244 (477)
...+.+|+|+|.||.|||++|+.|..-+.|.+ -.+.+.|..+++ +.+.+...+. ++ ...+....++ +
T Consensus 9 ~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g--~~~~vFn~g~yR------R~~~~~~~~~~ff~p~n~~~~~~R~~~a 80 (222)
T PF01591_consen 9 HAGKLVIVMVGLPARGKSYIARKLCRYLNWLG--VKTKVFNVGDYR------RKLSGAPQDAEFFDPDNEEAKKLREQIA 80 (222)
T ss_dssp ----EEEEEESSTTSSHHHHHHHHHHHHHHTT----EEEEEHHHHH------HHHHSS-S-GGGGSTT-HHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcC--CCcceeecccce------ecccccccccccCCCCChHHHHHHHHHH
Confidence 35689999999999999999999999988843 346778777663 3344321110 11 1112222333 3
Q ss_pred HHHHHHHHHHHH-hCCCcEEEeCCCCCHHHHHHHHHHH
Q 011773 245 TDAASSLLVTAL-NEGRDVIMDGTLSWVPFVEQTIAMA 281 (477)
Q Consensus 245 ~~la~~li~~aL-~~G~sVIiDgT~s~~~~re~liala 281 (477)
...+..++.-.. ..|.--|+|+|.++++.|..+.+.+
T Consensus 81 ~~~l~dl~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~ 118 (222)
T PF01591_consen 81 KEALEDLIEWLQEEGGQVAIFDATNSTRERRKMLVERF 118 (222)
T ss_dssp HHHHHHHHHHHHTS--SEEEEES---SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 355666666555 3455569999999999888776544
No 108
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.40 E-value=3.2e-05 Score=72.39 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=23.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
++.+|++.|++||||||+++.|.+.+
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l 27 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELL 27 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 36899999999999999999999876
No 109
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=98.40 E-value=1e-06 Score=92.94 Aligned_cols=33 Identities=45% Similarity=0.672 Sum_probs=29.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
..|.|+|++||||||+++.|++ + ++.+||+|.+
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~-------G~~vidaD~i 34 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-L-------GAVVVDADVL 34 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-C-------CCeEEehHHH
Confidence 3589999999999999999987 4 4799999998
No 110
>PRK13973 thymidylate kinase; Provisional
Probab=98.39 E-value=3.7e-05 Score=74.06 Aligned_cols=92 Identities=23% Similarity=0.224 Sum_probs=50.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe---CcccccchHHHHHHhcCC-CCCchhhHHHHHhHhHHHH
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE---ADAFKETDVIYRALSSKG-HHDDMLQTAELVHQSSTDA 247 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvId---aD~Ike~d~irk~Ls~~g-~p~d~~~~ae~v~~~a~~l 247 (477)
++.+|++-|+.||||||.++.|.+.+. ..+..++- ++.-.....++..+.... ...++...+-.....-...
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l~----~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a~r~~~ 77 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLR----AAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAAARDDH 77 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHH----HCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHH
Confidence 368999999999999999999999873 12233332 222111223444443310 0001111111100011133
Q ss_pred HHHHHHHHHhCCCcEEEeCC
Q 011773 248 ASSLLVTALNEGRDVIMDGT 267 (477)
Q Consensus 248 a~~li~~aL~~G~sVIiDgT 267 (477)
+...+..+++.|..||.|--
T Consensus 78 ~~~~i~~~l~~g~~Vi~DRy 97 (213)
T PRK13973 78 VEEVIRPALARGKIVLCDRF 97 (213)
T ss_pred HHHHHHHHHHCCCEEEEcch
Confidence 44567889999999998843
No 111
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.36 E-value=3e-06 Score=82.52 Aligned_cols=41 Identities=20% Similarity=0.247 Sum_probs=31.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
+|.|+|+|||||||+++.|...+.-...+..+.+|+.|.+-
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 57899999999999999999876210123457789999884
No 112
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.36 E-value=2.7e-05 Score=72.74 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=24.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
+.+|++.|++||||||+++.|++.+.
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67999999999999999999999874
No 113
>PRK05439 pantothenate kinase; Provisional
Probab=98.36 E-value=1.3e-05 Score=82.37 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=36.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
.+.|.+|+|+|++||||||+++.|...+.-...+..+.+|..|.|-
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 5779999999999999999999998865310123457899999984
No 114
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.35 E-value=3.8e-06 Score=77.70 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=22.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
.+++|+|+|||||||+++.|+..++
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988764
No 115
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.34 E-value=3e-06 Score=79.95 Aligned_cols=27 Identities=37% Similarity=0.714 Sum_probs=24.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+++.+|+|.||+||||||+++.|+..+
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 457899999999999999999999875
No 116
>PRK13808 adenylate kinase; Provisional
Probab=98.33 E-value=1.3e-05 Score=83.09 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=29.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 176 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 176 IlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
|+|.|||||||||++..|++.++ +++|+.|++
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~yg-------l~~is~gdl 34 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYG-------IVQLSTGDM 34 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC-------CceecccHH
Confidence 78899999999999999999984 799998776
No 117
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.32 E-value=4e-06 Score=78.99 Aligned_cols=37 Identities=27% Similarity=0.584 Sum_probs=31.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
+|.|+|++||||||+++.|...+. +..+.+++.|.+-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~----~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG----NPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC----CCCeEEEEecccc
Confidence 588999999999999999988762 3467899999873
No 118
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.31 E-value=1.4e-05 Score=75.82 Aligned_cols=35 Identities=34% Similarity=0.409 Sum_probs=31.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 216 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike 216 (477)
-|+|.|+|||||||+.+.|++.+ +..|+|.|.+.+
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L-------~~~F~D~D~~Ie 38 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKAL-------NLPFIDTDQEIE 38 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHc-------CCCcccchHHHH
Confidence 47889999999999999999998 489999998844
No 119
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.30 E-value=1.4e-05 Score=74.81 Aligned_cols=35 Identities=26% Similarity=0.332 Sum_probs=31.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+..|++.|++||||||+++.|+..++ +.++|.|..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~-------~~~vd~D~~ 38 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN-------MEFYDSDQE 38 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC-------CcEEECCch
Confidence 45799999999999999999999874 789999975
No 120
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.29 E-value=8.9e-06 Score=79.99 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=32.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.|.-|+|.|||||||||+++.|++.++ +.+|+.|++
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g-------~~~is~gdl 40 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKEN-------LKHINMGNI 40 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC-------CcEEECChH
Confidence 355599999999999999999999984 799999988
No 121
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.29 E-value=1.6e-05 Score=80.08 Aligned_cols=169 Identities=18% Similarity=0.154 Sum_probs=86.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCC-chhhHHHHHhHhHHHHHHHHHH
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHD-DMLQTAELVHQSSTDAASSLLV 253 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~-d~~~~ae~v~~~a~~la~~li~ 253 (477)
++.|+|++||||||+++.|...++ ..+..+|..|.+...+. ......+... ++. .. ....+...+
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~----~~~~~vi~~Dd~~~~~~--~~r~~~g~~~~~p~-~~------~~d~l~~~l- 66 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFG----SDLVTVICLDDYHSLDR--KGRKETGITALDPR-AN------NFDLMYEQL- 66 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhC----CCceEEEECcccccCCH--HHHHHhhccccccc-ch------hHHHHHHHH-
Confidence 578999999999999999998763 23567888998843221 1111111110 110 00 011122222
Q ss_pred HHHhCCCcEEE---eCCCCCHHHHHHHHHHHhccccccccccccceecC-CCceehhhHHhhhccchhhHhhhhhhhccC
Q 011773 254 TALNEGRDVIM---DGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNE-DGTVIENYWEQVKEGEEDYQQKENRQVFSR 329 (477)
Q Consensus 254 ~aL~~G~sVIi---DgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~-dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~ 329 (477)
..++.|..+.. +...... .+...+.+ +=.++|+.+-..... .+
T Consensus 67 ~~Lk~g~~i~~P~y~~~~~~~--------------------~~~~~i~~~~ivIvEG~~~l~~~~-------------l~ 113 (273)
T cd02026 67 KALKEGQAIEKPIYNHVTGLI--------------------DPPELIKPTKIVVIEGLHPLYDER-------------VR 113 (273)
T ss_pred HHHHCCCCcccccccccCCCc--------------------CCcEEcCCCCEEEEeeehhhCchh-------------hh
Confidence 46777776643 2111100 00000000 114668776432211 12
Q ss_pred CCceEEEEEEecCHHHHHHHHHHhhhc-cccccchhhhhhHHHHHHHhHHH----hhccCceEEEEecC
Q 011773 330 KPYRIELVGVVCDAYLAVVRGIRRAIM-MKRAVRVNSQLKSHKRFANAFRN----YCELVDNARLYCTN 393 (477)
Q Consensus 330 ~pY~I~lv~V~~d~elav~Rv~~R~~~-gGr~Vp~~~ql~~~~rf~~~~~~----y~~lvD~a~lydnn 393 (477)
.-+.+ .++|++++++..+|.++|+.. +|+... .++.+...-...+.. ....+|.++-++.+
T Consensus 114 ~~~D~-~I~vd~~~e~r~~r~i~Rd~~rrG~s~e--~v~~~i~~r~~~~~~~I~P~~~~ADvVI~~~p~ 179 (273)
T cd02026 114 ELLDF-SVYLDISDEVKFAWKIQRDMAERGHSLE--DVLASIEARKPDFEAYIDPQKQYADVVIQVLPT 179 (273)
T ss_pred hhccE-EEEEECChhHHHHHHHHHHHHHhCCCHH--HHHHHHHhhchhHHHHhccccccCcEEEEccCc
Confidence 22333 489999999999999999875 465432 222222222223333 35667877766644
No 122
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.27 E-value=1e-05 Score=82.33 Aligned_cols=47 Identities=17% Similarity=0.260 Sum_probs=34.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 216 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike 216 (477)
.+.|.+|.|+|||||||||+++.|...+.-....+.+.+++.|.+..
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~ 105 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLH 105 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccc
Confidence 46799999999999999999988765442001123577899998853
No 123
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=98.24 E-value=6.2e-05 Score=72.82 Aligned_cols=58 Identities=10% Similarity=-0.047 Sum_probs=34.7
Q ss_pred EEEEEecCHHHHHHHHHHhhhccccccchhhhhhHHHHHHHhHHH-hhccCceEEEEecC
Q 011773 335 ELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRN-YCELVDNARLYCTN 393 (477)
Q Consensus 335 ~lv~V~~d~elav~Rv~~R~~~gGr~Vp~~~ql~~~~rf~~~~~~-y~~lvD~a~lydnn 393 (477)
.+|++++||+.+..|...|.......++.+.+.+-+..+.+.+.. |.. .+.++++|.+
T Consensus 145 ~~i~l~~~~~~~~~Ri~~R~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~-~~~~i~id~~ 203 (219)
T cd02030 145 LVIYLDVPVPEVQKRIKKRGDPHEMKVTSAYLQDIENAYKKTFLPEISE-HSEVLQYDWT 203 (219)
T ss_pred EEEEEeCCHHHHHHHHHHcCCchhhcccHHHHHHHHHHHHHHHHHhhcc-CCCEEEEeCC
Confidence 458899999999999988875433334444444444444444332 222 3456677743
No 124
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.23 E-value=7.8e-07 Score=76.60 Aligned_cols=33 Identities=27% Similarity=0.469 Sum_probs=30.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+|+|+|+|||||||+++.|++.++ +.+|+.|++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~-------~~~i~~d~~ 33 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG-------FPVISMDDL 33 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT-------CEEEEEHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC-------CeEEEecce
Confidence 589999999999999999999984 788999984
No 125
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.20 E-value=6.2e-06 Score=77.43 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=23.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+++|++.||+||||+|++..|.+..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 5789999999999999999998885
No 126
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.19 E-value=4.4e-05 Score=74.59 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=32.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
++.+|.|.|++||||||+++.|++.++ +.+++.|.+
T Consensus 3 ~~~~i~i~g~~gsGksti~~~la~~~~-------~~~~~~~~~ 38 (225)
T PRK00023 3 KAIVIAIDGPAGSGKGTVAKILAKKLG-------FHYLDTGAM 38 (225)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC-------CCcccCchh
Confidence 468999999999999999999999984 788998886
No 127
>PRK13949 shikimate kinase; Provisional
Probab=98.18 E-value=9.1e-05 Score=69.23 Aligned_cols=33 Identities=33% Similarity=0.457 Sum_probs=29.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
-|+|.|+|||||||+++.|++.++ +.++|.|.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~-------~~~id~D~~ 35 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG-------LSFIDLDFF 35 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC-------CCeecccHH
Confidence 388999999999999999999984 789999976
No 128
>PRK14526 adenylate kinase; Provisional
Probab=98.17 E-value=7.2e-05 Score=72.68 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=28.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 176 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 176 IlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
|+|.|+|||||||+++.|++.++ ..+|+++++
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~-------~~~is~G~l 34 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELN-------YYHISTGDL 34 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC-------CceeecChH
Confidence 67899999999999999998874 688888776
No 129
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.15 E-value=2.6e-06 Score=73.07 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 011773 176 LLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 176 IlLaGp~GSGKSTlAr~La~~l 197 (477)
|+|+|++||||||+++.|.+++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999984
No 130
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.14 E-value=4e-05 Score=85.87 Aligned_cols=64 Identities=13% Similarity=0.209 Sum_probs=50.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhcCCCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEE
Q 011773 130 KVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV 209 (477)
Q Consensus 130 ~v~~~~~~~r~~~~l~ee~~~~~~~~~~~~~~v~~~~~~~~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvI 209 (477)
.|+.-.-+.+.|-...+.++.++.- . .+....|.+.||+||||||+++.|+++++ +.++
T Consensus 413 ~I~~~~~v~ksyP~F~~~l~~Lg~~-------------~-~~~~~~i~i~g~~~~gks~~~~~l~~~~~-------~~~~ 471 (661)
T PRK11860 413 RINDPKCVAKTFPDYFEALFSVAQA-------------D-ADRVPVICIDGPTASGKGTVAARVAEALG-------YHYL 471 (661)
T ss_pred EEeccCeeecCCCChHHHHHHhcCC-------------c-ccCcceEEeeCCCCCCHHHHHHHHHHHhC-------CeEe
Confidence 3566667888888888888888632 1 12233788899999999999999999985 6899
Q ss_pred eCccc
Q 011773 210 EADAF 214 (477)
Q Consensus 210 daD~I 214 (477)
|+|.+
T Consensus 472 ~~~~~ 476 (661)
T PRK11860 472 DSGAL 476 (661)
T ss_pred cHHHh
Confidence 99987
No 131
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.14 E-value=5.9e-05 Score=82.28 Aligned_cols=37 Identities=27% Similarity=0.434 Sum_probs=33.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
..|.+|.|.||+||||||+++.|++.++ +.++|.|.+
T Consensus 282 ~~~~ii~i~G~sgsGKst~a~~la~~l~-------~~~~d~g~~ 318 (512)
T PRK13477 282 KRQPIIAIDGPAGAGKSTVTRAVAKKLG-------LLYLDTGAM 318 (512)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC-------CeEecCCce
Confidence 4678999999999999999999999984 799998887
No 132
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=98.13 E-value=4.1e-05 Score=69.24 Aligned_cols=30 Identities=27% Similarity=0.283 Sum_probs=26.9
Q ss_pred EEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 178 MGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 178 LaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
|.|||||||||+++.|+++++ +++|+.+++
T Consensus 1 i~G~PgsGK~t~~~~la~~~~-------~~~is~~~l 30 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG-------LVHISVGDL 30 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT-------SEEEEHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcC-------cceechHHH
Confidence 579999999999999999984 899998776
No 133
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.13 E-value=5.3e-05 Score=77.33 Aligned_cols=37 Identities=24% Similarity=0.108 Sum_probs=32.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.++..|+|+|+|||||||+++.|++.++ +.+||.|..
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~Lg-------~~~id~D~~ 167 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARLG-------VPFVELNRE 167 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHcC-------CCEEeHHHH
Confidence 4567899999999999999999999985 678888865
No 134
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.04 E-value=1e-05 Score=75.74 Aligned_cols=85 Identities=21% Similarity=0.363 Sum_probs=48.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhcc--c--------------cCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhh
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESF--W--------------SGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQ 235 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~--~--------------~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~ 235 (477)
++++|+|+||+||||||+++.|.+.++ + ...|.++.+|+.++|.. .+.. + ++..
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~------~~~~-~---~fie 70 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFER------MIKA-G---EFIE 70 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHH------HHHT-T---HEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhh------hhcc-c---cEEE
Confidence 367899999999999999999988753 1 11244566666666621 1111 0 1111
Q ss_pred HHHHHhHhHHHHHHHHHHHHHhCCCcEEEeCC
Q 011773 236 TAELVHQSSTDAASSLLVTALNEGRDVIMDGT 267 (477)
Q Consensus 236 ~ae~v~~~a~~la~~li~~aL~~G~sVIiDgT 267 (477)
..+. ....+....+.+...+++|+.+|+|..
T Consensus 71 ~~~~-~g~~YGt~~~~i~~~~~~gk~~il~~~ 101 (183)
T PF00625_consen 71 YGEY-DGNYYGTSKSAIDKVLEEGKHCILDVD 101 (183)
T ss_dssp EEEE-TTEEEEEEHHHHHHHHHTTTEEEEEET
T ss_pred Eeee-cchhhhhccchhhHhhhcCCcEEEEcc
Confidence 1110 111112223466778889999999865
No 135
>PLN02459 probable adenylate kinase
Probab=98.03 E-value=0.00018 Score=72.37 Aligned_cols=36 Identities=19% Similarity=0.123 Sum_probs=30.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.|..|+|.|||||||||+++.|++.++ +.+|+++++
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~~-------~~~is~gdl 63 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLLG-------VPHIATGDL 63 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhC-------CcEEeCcHH
Confidence 455677789999999999999999974 789998776
No 136
>PRK13975 thymidylate kinase; Provisional
Probab=97.98 E-value=0.00033 Score=65.45 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=24.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
|+.+|++.|++||||||+++.|++.++
T Consensus 1 m~~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 1 MNKFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357999999999999999999999984
No 137
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.96 E-value=0.00027 Score=71.99 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=21.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
.+.+|+|+|++||||||+++.|...
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~~~ 29 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALEDL 29 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHc
Confidence 3569999999999999999999643
No 138
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=97.92 E-value=0.001 Score=61.92 Aligned_cols=56 Identities=14% Similarity=0.065 Sum_probs=37.2
Q ss_pred EEEEecCHHHHHHHHHHhhhccccccchhhhhhHHHHHHHhHHHhhccCceEEEEecCC
Q 011773 336 LVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVDNARLYCTNA 394 (477)
Q Consensus 336 lv~V~~d~elav~Rv~~R~~~gGr~Vp~~~ql~~~~rf~~~~~~y~~lvD~a~lydnn~ 394 (477)
++++++||+++.+|...|.. ..-........+.++...+......-+++++-|++.
T Consensus 122 ~~~Ldv~pe~~~~R~~~r~~---~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~iid~~~ 177 (186)
T PF02223_consen 122 TFFLDVDPEEALKRIAKRGE---KDDEEEEDLEYLRRVREAYLELAKDPNNWVIIDASR 177 (186)
T ss_dssp EEEEECCHHHHHHHHHHTSS---TTTTTTHHHHHHHHHHHHHHHHHHTTTTEEEEETTS
T ss_pred EEEEecCHHHHHHHHHcCCc---cchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEECCC
Confidence 47889999999999999987 122233344445555555554444557788888653
No 139
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.91 E-value=4.6e-05 Score=72.29 Aligned_cols=32 Identities=31% Similarity=0.370 Sum_probs=29.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 176 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 176 IlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
|+|-|+|||||||+|+.|++.++ .++||+|++
T Consensus 3 iiilG~pGaGK~T~A~~La~~~~-------i~hlstgd~ 34 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKLG-------LPHLDTGDI 34 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC-------CcEEcHhHH
Confidence 78899999999999999999974 899998877
No 140
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=97.91 E-value=0.0004 Score=67.96 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=24.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
-.+|+|+|+.|+||||+|+.|+++++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 36899999999999999999999985
No 141
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=97.90 E-value=0.00026 Score=71.70 Aligned_cols=155 Identities=17% Similarity=0.235 Sum_probs=85.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhcc-ccCCCCCeEEEeCcccccchHH--HHH-HhcCCCCCchhhHHHHHhHhHH
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESF-WSGAATNAVVVEADAFKETDVI--YRA-LSSKGHHDDMLQTAELVHQSST 245 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~-~~~~~~~~vvIdaD~Ike~d~i--rk~-Ls~~g~p~d~~~~ae~v~~~a~ 245 (477)
.+.|.+|.++|++|+||||+|+.+...+. |. ..+.+..|-.|=|.-.+.. .+. +...|.|..+..
T Consensus 79 ~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~-~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~---------- 147 (283)
T COG1072 79 QQRPFIIGIAGSVAVGKSTTARILQALLSRWP-ESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDV---------- 147 (283)
T ss_pred CCCCEEEEeccCccccHHHHHHHHHHHHhhCC-CCCceEEEeccccccCHhHhhhccccccCCCCccccH----------
Confidence 57899999999999999999999876532 21 1123567777777422111 111 222244431111
Q ss_pred HHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHhcccccccccccccee--cCCCceehhhHHhhhccchhhHhhhh
Q 011773 246 DAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKV--NEDGTVIENYWEQVKEGEEDYQQKEN 323 (477)
Q Consensus 246 ~la~~li~~aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v--~~dg~i~E~yw~~v~~~~~~~~~~~~ 323 (477)
..+. .....+++|..-|.==++++.-+ -...-++.| ..|=-|+||.|....+. ++
T Consensus 148 ~~ll-~fl~~vK~~~~~v~aPvysh~~y---------------D~vpd~~~v~~~pdIlI~EG~nvLq~~~-------p~ 204 (283)
T COG1072 148 AALL-RFLSDVKAGKPDVFAPVYSHLIY---------------DPVPDAFQVVPQPDILIVEGNNVLQDGE-------PW 204 (283)
T ss_pred HHHH-HHHHHHhcCCCcccccccccccc---------------ccCCCceeecCCCCEEEEechhhhcCCC-------cc
Confidence 1111 23334555665433333333211 001112333 22336789999876652 11
Q ss_pred hhhccCCCceEEEEEEecCHHHHHHHHHHhhhcccccc
Q 011773 324 RQVFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAV 361 (477)
Q Consensus 324 ~~~~~~~pY~I~lv~V~~d~elav~Rv~~R~~~gGr~V 361 (477)
......|++ -++|+++.++.-+|.+.|....|...
T Consensus 205 --~~~sdffDf-SIyvDa~~~~le~wyi~Rfl~~g~~a 239 (283)
T COG1072 205 --LFLSDFFDF-SIYVDADEELLEERYIERFLKFGLTA 239 (283)
T ss_pred --ccccccceE-EEEecCCHHHHHHHHHHHHHhcccch
Confidence 123333333 48999999999999999998766544
No 142
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.90 E-value=0.00031 Score=76.35 Aligned_cols=34 Identities=26% Similarity=0.285 Sum_probs=30.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
-|+|+|+|||||||+++.|++.++ +.+||+|.+.
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg-------~~~id~D~~i 35 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLD-------LQFIDMDEEI 35 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC-------CeEEECcHHH
Confidence 388999999999999999999884 7899999874
No 143
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.90 E-value=3.6e-05 Score=78.96 Aligned_cols=84 Identities=23% Similarity=0.394 Sum_probs=54.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhc------------CCCCC-chhhHH
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSS------------KGHHD-DMLQTA 237 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~------------~g~p~-d~~~~a 237 (477)
.+|.+|+|+||+||||||+|..|++.+ +..+|++|.+. +|+.++- ..|.. +.....
T Consensus 2 ~~~~~i~i~GptgsGKt~la~~la~~~-------~~~iis~Ds~Q----vy~~l~i~Takp~~~E~~gv~hhlid~~~~~ 70 (307)
T PRK00091 2 MKPKVIVIVGPTASGKTALAIELAKRL-------NGEIISADSMQ----VYRGMDIGTAKPTAEERAGVPHHLIDILDPT 70 (307)
T ss_pred CCceEEEEECCCCcCHHHHHHHHHHhC-------CCcEEeccccc----eeecccccCCCCCHHHHcCccEEeecccChh
Confidence 357899999999999999999999987 36899999962 1232221 10100 000000
Q ss_pred H-HHhHhHHHHHHHHHHHHHhCCCcEEEe
Q 011773 238 E-LVHQSSTDAASSLLVTALNEGRDVIMD 265 (477)
Q Consensus 238 e-~v~~~a~~la~~li~~aL~~G~sVIiD 265 (477)
+ ..-....+.+...++.+++.|..+|+.
T Consensus 71 ~~~s~~~f~~~a~~~i~~i~~~gk~pIlv 99 (307)
T PRK00091 71 ESYSVADFQRDALAAIADILARGKLPILV 99 (307)
T ss_pred hcccHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 1 111123356677888899999998886
No 144
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.90 E-value=0.00016 Score=70.85 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=31.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
..+|.|=||+||||||+++.|+++++ +.++|+..+
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg-------~~yldTGam 38 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLG-------FHYLDTGAM 38 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHhC-------CCeecccHH
Confidence 47899999999999999999999995 789988876
No 145
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=97.90 E-value=8.4e-05 Score=70.10 Aligned_cols=132 Identities=18% Similarity=0.184 Sum_probs=85.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCC--C----c-----hhhHHH
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHH--D----D-----MLQTAE 238 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p--~----d-----~~~~ae 238 (477)
....++|++.|++.||||++|.++..-. +...-+|.-|.|-+.-+-.+.....|+. . + +...+.
T Consensus 20 ~~~griVlLNG~~saGKSSiA~A~Q~~~-----a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gp 94 (205)
T COG3896 20 MPEGRIVLLNGGSSAGKSSIALAFQDLA-----AEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGP 94 (205)
T ss_pred CCCceEEEecCCCccchhHHHHHHHHHh-----hcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechh
Confidence 3457899999999999999999998765 2456788888874321111111111211 0 0 011111
Q ss_pred HHhHhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhh
Q 011773 239 LVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDY 318 (477)
Q Consensus 239 ~v~~~a~~la~~li~~aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~ 318 (477)
+.+.+.......+...+.+|.++|.|.+...+.++-. .+
T Consensus 95 -i~e~~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~D---c~------------------------------------- 133 (205)
T COG3896 95 -ILELAMHSRRRAIRAYADNGMNVIADDVIWTREWLVD---CL------------------------------------- 133 (205)
T ss_pred -HHHHHHHHHHHHHHHHhccCcceeehhcccchhhHHH---HH-------------------------------------
Confidence 1333444445567778889999999999887644332 11
Q ss_pred HhhhhhhhccCCCceEEEEEEecCHHHHHHHHHHhhh
Q 011773 319 QQKENRQVFSRKPYRIELVGVVCDAYLAVVRGIRRAI 355 (477)
Q Consensus 319 ~~~~~~~~~~~~pY~I~lv~V~~d~elav~Rv~~R~~ 355 (477)
..-.|+++.+|+|.||.|+-.+|..+|..
T Consensus 134 --------r~l~g~~v~~VGV~~p~E~~~~Re~rr~d 162 (205)
T COG3896 134 --------RVLEGCRVWMVGVHVPDEEGARRELRRGD 162 (205)
T ss_pred --------HHHhCCceEEEEeeccHHHHHHHHhhcCC
Confidence 12347789999999999999888888754
No 146
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=97.90 E-value=0.00038 Score=63.89 Aligned_cols=27 Identities=37% Similarity=0.295 Sum_probs=24.7
Q ss_pred CCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 182 MGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 182 ~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
|||||||+++.|++.++ ..++|.|.+-
T Consensus 1 ~GsGKStvg~~lA~~L~-------~~fiD~D~~i 27 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLG-------RPFIDLDDEI 27 (158)
T ss_dssp TTSSHHHHHHHHHHHHT-------SEEEEHHHHH
T ss_pred CCCcHHHHHHHHHHHhC-------CCccccCHHH
Confidence 79999999999999995 7999999873
No 147
>PRK14529 adenylate kinase; Provisional
Probab=97.89 E-value=0.00014 Score=71.43 Aligned_cols=32 Identities=28% Similarity=0.261 Sum_probs=27.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 176 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 176 IlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
|+|.|||||||||+++.|++.++ ..+|+..++
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~-------~~~is~gdl 34 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYD-------LAHIESGAI 34 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC-------CCCcccchh
Confidence 78899999999999999999984 677875554
No 148
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.86 E-value=0.00022 Score=80.62 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=30.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+|.|.|||||||||+++.|++.++ +.++|+..+
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~-------~~~~~~g~~ 35 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLG-------YAYLDTGAM 35 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcEeecCcE
Confidence 689999999999999999999985 688988877
No 149
>PLN02772 guanylate kinase
Probab=97.86 E-value=0.0002 Score=75.86 Aligned_cols=85 Identities=18% Similarity=0.297 Sum_probs=54.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhcc--c--------------cCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhh
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESF--W--------------SGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQ 235 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~--~--------------~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~ 235 (477)
..++++|+||+||||||+.+.|.+.+. + +..+.++.|++.+.|.. .+.. +.+..
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~------~i~~----g~FlE 203 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEK------EIKD----GKFLE 203 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHH------HHHh----Cccce
Confidence 457999999999999999999988642 1 00122355555455421 1211 12333
Q ss_pred HHHHHhHhHHHHHHHHHHHHHhCCCcEEEeCC
Q 011773 236 TAELVHQSSTDAASSLLVTALNEGRDVIMDGT 267 (477)
Q Consensus 236 ~ae~v~~~a~~la~~li~~aL~~G~sVIiDgT 267 (477)
+++. |...|....+.++..+++|+.+|+|-.
T Consensus 204 ~~e~-~Gn~YGTsk~~V~~vl~~Gk~vILdLD 234 (398)
T PLN02772 204 FASV-HGNLYGTSIEAVEVVTDSGKRCILDID 234 (398)
T ss_pred eeee-cCccccccHHHHHHHHHhCCcEEEeCC
Confidence 3332 555666666788899999999999943
No 150
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=97.77 E-value=0.0014 Score=63.90 Aligned_cols=91 Identities=20% Similarity=0.197 Sum_probs=48.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe-CcccccchHHHHHHhcCCCCCchhhHHHHHhHhH-HHHHH
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-ADAFKETDVIYRALSSKGHHDDMLQTAELVHQSS-TDAAS 249 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvId-aD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a-~~la~ 249 (477)
++.+|.+-|.=||||||.++.|.+.+. +.+-.+++.- +..-.-...++..+.......++...+-. .... ..-+.
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~--~~g~~v~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lL-faadR~~h~~ 78 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLE--ERGIKVVLTREPGGTPIGEKIRELLLNGEEKLSPKAEALL-FAADRAQHLE 78 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHH-HHHHHHHHHH
Confidence 578999999999999999999998874 1211222221 11100011233333321001111111111 1111 13356
Q ss_pred HHHHHHHhCCCcEEEe
Q 011773 250 SLLVTALNEGRDVIMD 265 (477)
Q Consensus 250 ~li~~aL~~G~sVIiD 265 (477)
..+..++..|.-||.|
T Consensus 79 ~~i~pal~~g~vVI~D 94 (208)
T COG0125 79 EVIKPALKEGKVVICD 94 (208)
T ss_pred HHHHHhhcCCCEEEEC
Confidence 7888899999999998
No 151
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.74 E-value=0.00089 Score=73.63 Aligned_cols=35 Identities=29% Similarity=0.249 Sum_probs=30.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
..|+|.|.|||||||+++.|++.++ ..+||.|..-
T Consensus 7 ~~i~LiG~~GaGKttvg~~LA~~L~-------~~fiD~D~~i 41 (542)
T PRK14021 7 PQAVIIGMMGAGKTRVGKEVAQMMR-------LPFADADVEI 41 (542)
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhC-------CCEEEchHHH
Confidence 4677889999999999999999985 6899999863
No 152
>PRK07933 thymidylate kinase; Validated
Probab=97.74 E-value=0.0019 Score=62.63 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=22.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
++|.+-|+-||||||+++.|.+.+.
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~ 25 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALE 25 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999999875
No 153
>PRK13974 thymidylate kinase; Provisional
Probab=97.73 E-value=0.0037 Score=60.23 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=23.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
+.+|++-|++||||||.++.|.+.+.
T Consensus 3 g~~i~~eG~dGsGKsT~~~~l~~~l~ 28 (212)
T PRK13974 3 GKFIVLEGIDGCGKTTQIDHLSKWLP 28 (212)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999998863
No 154
>PLN02199 shikimate kinase
Probab=97.73 E-value=0.0011 Score=68.11 Aligned_cols=36 Identities=28% Similarity=0.235 Sum_probs=31.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
..-|+|.|.+||||||+++.|++.++ +.+||+|.+.
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg-------~~fIDtD~lI 137 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLG-------YTFFDCDTLI 137 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC-------CCEEehHHHH
Confidence 45789999999999999999999884 7899999874
No 155
>PLN02924 thymidylate kinase
Probab=97.71 E-value=0.0016 Score=63.70 Aligned_cols=29 Identities=24% Similarity=0.213 Sum_probs=26.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
.+++.+|.+.|+.||||||.++.|.+.+.
T Consensus 13 ~~~g~~IviEGiDGsGKsTq~~~L~~~l~ 41 (220)
T PLN02924 13 ESRGALIVLEGLDRSGKSTQCAKLVSFLK 41 (220)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56789999999999999999999999875
No 156
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.69 E-value=0.00044 Score=69.68 Aligned_cols=45 Identities=22% Similarity=0.438 Sum_probs=35.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 216 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike 216 (477)
...|.+|+++|++|+||||++..|+..+. ..+....+|++|.++.
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~--~~g~~V~li~~D~~r~ 113 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLK--KQGKSVLLAAGDTFRA 113 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEeCCCCCH
Confidence 35688999999999999999999987652 3344678899998854
No 157
>PLN02842 nucleotide kinase
Probab=97.51 E-value=0.0019 Score=70.54 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=27.2
Q ss_pred EEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 177 LMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 177 lLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+|.|+|||||||+++.|++.++ ..+|+++++
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg-------~~hIs~gdL 31 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFG-------LVHISTGDL 31 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhC-------CCEEEccHH
Confidence 4789999999999999999984 788987776
No 158
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=97.51 E-value=0.00062 Score=64.00 Aligned_cols=44 Identities=16% Similarity=0.309 Sum_probs=35.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
.....+|.|+|.+||||||+|-+|.+.+. ..+.-...+|.|.++
T Consensus 28 ~qkGcviWiTGLSgSGKStlACaL~q~L~--qrgkl~Y~LDGDNvR 71 (207)
T KOG0635|consen 28 KQKGCVIWITGLSGSGKSTLACALSQALL--QRGKLTYILDGDNVR 71 (207)
T ss_pred cCCCcEEEEeccCCCCchhHHHHHHHHHH--hcCceEEEecCcccc
Confidence 34568899999999999999999888764 444557789999984
No 159
>PLN02840 tRNA dimethylallyltransferase
Probab=97.46 E-value=0.00029 Score=75.29 Aligned_cols=46 Identities=22% Similarity=0.352 Sum_probs=38.0
Q ss_pred ccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 162 VMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 162 v~~~~~~~~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
++.+.++..+++.+|+|+||+||||||++..|++.++ ..+|++|.+
T Consensus 10 ~~~~~~~~~~~~~vi~I~GptgsGKTtla~~La~~~~-------~~iis~Ds~ 55 (421)
T PLN02840 10 LSGSGASKTKKEKVIVISGPTGAGKSRLALELAKRLN-------GEIISADSV 55 (421)
T ss_pred cCCCccccccCCeEEEEECCCCCCHHHHHHHHHHHCC-------CCeEecccc
Confidence 4555555567778999999999999999999999974 568999976
No 160
>PLN02165 adenylate isopentenyltransferase
Probab=97.46 E-value=0.00027 Score=73.43 Aligned_cols=37 Identities=19% Similarity=0.343 Sum_probs=32.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+++.+|+|.||+||||||++..|+..++ ..+||+|.+
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~-------~eIIsaDs~ 77 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFP-------SEIINSDKM 77 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcC-------CceecCChh
Confidence 4566999999999999999999999874 578999987
No 161
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.44 E-value=0.00055 Score=58.86 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=27.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 176 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 176 IlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
|+|.||||+||||+++.+++.++ .....++...+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~-----~~~~~i~~~~~ 34 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG-----FPFIEIDGSEL 34 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT-----SEEEEEETTHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcc-----ccccccccccc
Confidence 68999999999999999999974 34556666665
No 162
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=97.41 E-value=0.0043 Score=63.27 Aligned_cols=62 Identities=15% Similarity=0.137 Sum_probs=36.4
Q ss_pred cCCCceEEEEEEecCHHHHHHHHHHhhhccccccchhh---hhhHHHHHHHhHHHhhccCceEEEEecCCC
Q 011773 328 SRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNS---QLKSHKRFANAFRNYCELVDNARLYCTNAV 395 (477)
Q Consensus 328 ~~~pY~I~lv~V~~d~elav~Rv~~R~~~gGr~Vp~~~---ql~~~~rf~~~~~~y~~lvD~a~lydnn~~ 395 (477)
...+..+.++|++|+.++.+ +|..+|.|.=|... .+..-++-.+.+......+|. +.||+..
T Consensus 77 ~~~~~~~~ilFLdA~d~~Li----rRy~eTRR~HPL~~~~~~le~I~~Er~~L~~lr~~Ad~--vIDTs~l 141 (284)
T PF03668_consen 77 RKKGIDVRILFLDASDEVLI----RRYSETRRRHPLSSDGSLLEAIEKERELLEPLRERADL--VIDTSNL 141 (284)
T ss_pred HhcCCceEEEEEECChHHHH----HHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhCCE--EEECCCC
Confidence 44578899999999999875 45666666666432 222233333334444455553 4566554
No 163
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.38 E-value=0.00022 Score=59.77 Aligned_cols=42 Identities=19% Similarity=0.326 Sum_probs=32.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 216 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike 216 (477)
+..+++.||+|+||||+++.++..+.. ......+++++....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~--~~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP--PGGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC--CCCCEEEECCEEccc
Confidence 467899999999999999999998752 111478888887643
No 164
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.36 E-value=9.2e-05 Score=66.83 Aligned_cols=23 Identities=43% Similarity=0.767 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+|+|.||+||||||+++.|.+.+
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 47889999999999999999875
No 165
>PRK10867 signal recognition particle protein; Provisional
Probab=97.35 E-value=0.00094 Score=71.71 Aligned_cols=46 Identities=26% Similarity=0.434 Sum_probs=36.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCC-CCCeEEEeCcccccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA-ATNAVVVEADAFKET 217 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~-~~~~vvIdaD~Ike~ 217 (477)
...|.+|+++|++||||||++..|+..+. .. +..+.+|++|.++..
T Consensus 97 ~~~p~vI~~vG~~GsGKTTtaakLA~~l~--~~~G~kV~lV~~D~~R~a 143 (433)
T PRK10867 97 AKPPTVIMMVGLQGAGKTTTAGKLAKYLK--KKKKKKVLLVAADVYRPA 143 (433)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHH--HhcCCcEEEEEccccchH
Confidence 35699999999999999998888877542 22 346789999999753
No 166
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.32 E-value=0.0029 Score=67.95 Aligned_cols=45 Identities=20% Similarity=0.287 Sum_probs=36.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 216 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike 216 (477)
...|.+|+|+|++||||||++..|+..+ ...+..+.+|++|.++.
T Consensus 97 ~~~~~vi~lvG~~GvGKTTtaaKLA~~l--~~~G~kV~lV~~D~~R~ 141 (429)
T TIGR01425 97 KGKQNVIMFVGLQGSGKTTTCTKLAYYY--QRKGFKPCLVCADTFRA 141 (429)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCCEEEEcCcccch
Confidence 4568999999999999999999998765 23344688999999973
No 167
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.30 E-value=0.001 Score=61.32 Aligned_cols=40 Identities=23% Similarity=0.385 Sum_probs=32.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 216 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike 216 (477)
++++.|++||||||++..++..+ ...+....+|+.|.++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~--~~~g~~v~~i~~D~~~~ 41 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL--KKKGKKVLLVAADTYRP 41 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH--HHCCCcEEEEEcCCCCh
Confidence 68899999999999999988764 23344678999998864
No 168
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.29 E-value=0.0025 Score=68.35 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=36.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 216 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike 216 (477)
...|.+++++|++||||||++..|+..+. ...+..+.+|++|.++.
T Consensus 96 ~~~p~vi~~vG~~GsGKTTtaakLA~~l~-~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 96 KKPPTVILMVGLQGSGKTTTCGKLAYYLK-KKQGKKVLLVACDLYRP 141 (428)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHH-HhCCCeEEEEeccccch
Confidence 35699999999999999999888877641 11245688999999874
No 169
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.29 E-value=0.00031 Score=56.19 Aligned_cols=23 Identities=39% Similarity=0.705 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+|.++|++||||||+++.|.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 37889999999999999999884
No 170
>PRK13976 thymidylate kinase; Provisional
Probab=97.19 E-value=0.018 Score=55.98 Aligned_cols=91 Identities=20% Similarity=0.205 Sum_probs=46.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCC-C-CCeEEE-eCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHH
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKESFWSGA-A-TNAVVV-EADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 250 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l~~~~~-~-~~~vvI-daD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~ 250 (477)
++|.+-|.-||||||.++.|.+.+. .. + ..+.+. .+..-.-...+++.+.+.... ++...+-.....-......
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~--~~~g~~~v~~~~eP~~~~~g~~ir~~l~~~~~~-~~~~~~llf~a~R~~~~~~ 77 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLS--DIYGENNVVLTREPGGTSFNELVRGLLLSLKNL-DKISELLLFIAMRREHFVK 77 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH--HhcCCcceEEeeCCCCCHHHHHHHHHHcCCcCC-CHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999998873 11 1 122222 121110112344444321101 1111000100001122345
Q ss_pred HHHHHHhCCCcEEEeCC
Q 011773 251 LLVTALNEGRDVIMDGT 267 (477)
Q Consensus 251 li~~aL~~G~sVIiDgT 267 (477)
.+..+++.|..||.|--
T Consensus 78 ~I~p~l~~G~~VI~DRy 94 (209)
T PRK13976 78 VILPALLQGKIVICDRF 94 (209)
T ss_pred HHHHHHHCCCEEEECCC
Confidence 67889999999999943
No 171
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.19 E-value=0.00053 Score=69.93 Aligned_cols=82 Identities=21% Similarity=0.343 Sum_probs=51.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcC----------CCCC---chhhHHHH-H
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK----------GHHD---DMLQTAEL-V 240 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~----------g~p~---d~~~~ae~-v 240 (477)
+|+|+||+||||||++..|++.++ ..+|++|.+. +|+.|.-. +.+. +.....+. .
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~-------~~iis~Ds~q----vY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~~ 69 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLN-------AEIISVDSMQ----IYKGMDIGTAKPSLQEREGIPHHLIDILDPSESYS 69 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCC-------CcEEEechhh----eeeeccccCCCCCHHHHcCccEEEEEEechhheEc
Confidence 479999999999999999999873 6789999872 23333210 0010 10111111 0
Q ss_pred hHhHHHHHHHHHHHHHhCCCcEEEe-CC
Q 011773 241 HQSSTDAASSLLVTALNEGRDVIMD-GT 267 (477)
Q Consensus 241 ~~~a~~la~~li~~aL~~G~sVIiD-gT 267 (477)
-......+...+....+.|+..|+- ||
T Consensus 70 v~~f~~~a~~~i~~~~~~g~~pi~vGGT 97 (287)
T TIGR00174 70 AADFQTLALNAIADITARGKIPLLVGGT 97 (287)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEcCc
Confidence 1223366777888899999866654 55
No 172
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.18 E-value=0.004 Score=64.27 Aligned_cols=44 Identities=23% Similarity=0.490 Sum_probs=35.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
...|.++++.|||||||||++..|+..+- ..+..+.++++|.++
T Consensus 111 ~~~~~vi~lvGpnGsGKTTt~~kLA~~l~--~~g~~V~Li~~D~~r 154 (318)
T PRK10416 111 EKKPFVILVVGVNGVGKTTTIGKLAHKYK--AQGKKVLLAAGDTFR 154 (318)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCeEEEEecCccc
Confidence 35689999999999999999999987653 234467889999985
No 173
>PLN02748 tRNA dimethylallyltransferase
Probab=97.18 E-value=0.00087 Score=72.58 Aligned_cols=38 Identities=21% Similarity=0.389 Sum_probs=33.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.+++.+|+|.||+||||||++..|+..+ +..+||+|..
T Consensus 19 ~~~~~~i~i~GptgsGKs~la~~la~~~-------~~eii~~Dsm 56 (468)
T PLN02748 19 KGKAKVVVVMGPTGSGKSKLAVDLASHF-------PVEIINADSM 56 (468)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhc-------CeeEEcCchh
Confidence 3567799999999999999999999997 4789999964
No 174
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.15 E-value=0.004 Score=58.94 Aligned_cols=78 Identities=17% Similarity=0.040 Sum_probs=51.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHHHHHHH
Q 011773 176 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTA 255 (477)
Q Consensus 176 IlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~li~~a 255 (477)
|+=.+.+|+||||++.+|..-++ .+-+|..|.|... .+. ..+...+..+
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg------~wgHvQnDnI~~k--------------~~~-----------~f~~~~l~~L 50 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFG------EWGHVQNDNITGK--------------RKP-----------KFIKAVLELL 50 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcC------CCCccccCCCCCC--------------CHH-----------HHHHHHHHHH
Confidence 34467899999999999998886 1468999998421 000 0111233333
Q ss_pred HhCCC-cEEEeCCCCCHHHHHHHHHHHhcc
Q 011773 256 LNEGR-DVIMDGTLSWVPFVEQTIAMARNV 284 (477)
Q Consensus 256 L~~G~-sVIiDgT~s~~~~re~lialar~~ 284 (477)
.+.+. -|+.|=.+.....|+++++.++..
T Consensus 51 ~~~~~~vViaDRNNh~~reR~ql~~~~~~~ 80 (168)
T PF08303_consen 51 AKDTHPVVIADRNNHQKRERKQLFEDVSQL 80 (168)
T ss_pred hhCCCCEEEEeCCCchHHHHHHHHHHHHHh
Confidence 33444 456688888888999999887653
No 175
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.15 E-value=0.00049 Score=66.14 Aligned_cols=42 Identities=19% Similarity=0.411 Sum_probs=34.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 216 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike 216 (477)
|.+|++.||+|+||||.+..|+..+-. .+....+|++|.+|.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~--~~~~v~lis~D~~R~ 42 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKL--KGKKVALISADTYRI 42 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHH--TT--EEEEEESTSST
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhh--ccccceeecCCCCCc
Confidence 889999999999999999999887642 256788999999973
No 176
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.11 E-value=0.00044 Score=71.85 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=38.8
Q ss_pred ccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 160 TDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 160 ~~v~~~~~~~~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.+++....+....|.+|.|+|+|||||||++..|...+. ..+..+.+|+.|.-
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~--~~g~~v~vi~~Dp~ 95 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLI--EQGHKVAVLAVDPS 95 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEEeCCC
Confidence 445555433356799999999999999999999877653 23446778888763
No 177
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.09 E-value=0.003 Score=59.45 Aligned_cols=131 Identities=18% Similarity=0.181 Sum_probs=74.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe-CcccccchHHHHHHhcCCCCC--chhhHHHHHhHhHHHH
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-ADAFKETDVIYRALSSKGHHD--DMLQTAELVHQSSTDA 247 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvId-aD~Ike~d~irk~Ls~~g~p~--d~~~~ae~v~~~a~~l 247 (477)
+....++++|++||||||+.+.|..... +..+.+.++ ++++. +. ++. ................
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~---~~~~~i~ied~~E~~--------~~---~~~~~~~~~~~~~~~~~~~~~ 88 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIP---PDERIITIEDTAELQ--------LP---HPNWVRLVTRPGNVEGSGEVT 88 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcC---CCCCEEEECCccccC--------CC---CCCEEEEEEecCCCCCCCccC
Confidence 3467899999999999999999987653 233444442 22221 00 000 0000000000000112
Q ss_pred HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhc
Q 011773 248 ASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVF 327 (477)
Q Consensus 248 a~~li~~aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~ 327 (477)
....+..+++.+-++|+-+.+..++-.. ++..+
T Consensus 89 ~~~~l~~~lR~~pd~i~igEir~~ea~~-~~~a~---------------------------------------------- 121 (186)
T cd01130 89 MADLLRSALRMRPDRIIVGEVRGGEALD-LLQAM---------------------------------------------- 121 (186)
T ss_pred HHHHHHHHhccCCCEEEEEccCcHHHHH-HHHHH----------------------------------------------
Confidence 3346777888899999999888775332 33222
Q ss_pred cCCCceEEEEEEe-cCHHHHHHHHHHhhhccccccch
Q 011773 328 SRKPYRIELVGVV-CDAYLAVVRGIRRAIMMKRAVRV 363 (477)
Q Consensus 328 ~~~pY~I~lv~V~-~d~elav~Rv~~R~~~gGr~Vp~ 363 (477)
..|+.-.+--++ .++..++.|...+...+++.++.
T Consensus 122 -~tGh~g~~~T~Ha~s~~~~~~Rl~~~~~~~~~~~~~ 157 (186)
T cd01130 122 -NTGHPGGMTTIHANSAEEALTRLELLPSNVPLGRPL 157 (186)
T ss_pred -hcCCCCceeeecCCCHHHHHHHHHHHHhhcCccHHH
Confidence 222221223444 47889999999999888876644
No 178
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.06 E-value=0.002 Score=68.85 Aligned_cols=92 Identities=24% Similarity=0.358 Sum_probs=60.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccch-HHHHHHhcC-CCCCchhhHHHHHhHhHHHH
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETD-VIYRALSSK-GHHDDMLQTAELVHQSSTDA 247 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d-~irk~Ls~~-g~p~d~~~~ae~v~~~a~~l 247 (477)
.+.|.+|+|+|.-||||||.+..|+..+- ..+....+|.+|.+|..- ..-+.|... +.| .++.........+
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lk--k~~~kvllVaaD~~RpAA~eQL~~La~q~~v~----~f~~~~~~~Pv~I 170 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLK--KKGKKVLLVAADTYRPAAIEQLKQLAEQVGVP----FFGSGTEKDPVEI 170 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHH--HcCCceEEEecccCChHHHHHHHHHHHHcCCc----eecCCCCCCHHHH
Confidence 46799999999999999999999887652 345668899999997431 111223221 111 1111112345567
Q ss_pred HHHHHHHHHhCCCcEE-EeCC
Q 011773 248 ASSLLVTALNEGRDVI-MDGT 267 (477)
Q Consensus 248 a~~li~~aL~~G~sVI-iDgT 267 (477)
+..-++.+-..+.+|| +||.
T Consensus 171 ak~al~~ak~~~~DvvIvDTA 191 (451)
T COG0541 171 AKAALEKAKEEGYDVVIVDTA 191 (451)
T ss_pred HHHHHHHHHHcCCCEEEEeCC
Confidence 7888999999998864 5643
No 179
>PRK14974 cell division protein FtsY; Provisional
Probab=97.05 E-value=0.002 Score=67.10 Aligned_cols=45 Identities=22% Similarity=0.393 Sum_probs=35.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 216 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike 216 (477)
..+|.+|+++|+||+||||++..|+..+. ..+..+.++++|.++.
T Consensus 137 ~~~~~vi~~~G~~GvGKTTtiakLA~~l~--~~g~~V~li~~Dt~R~ 181 (336)
T PRK14974 137 KGKPVVIVFVGVNGTGKTTTIAKLAYYLK--KNGFSVVIAAGDTFRA 181 (336)
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCcCcH
Confidence 45699999999999999998888776542 2234577899998864
No 180
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.03 E-value=0.0027 Score=59.58 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=28.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
-|+++|-||+||||++.+|++.+ +..+|+.-++.
T Consensus 9 NILvtGTPG~GKstl~~~lae~~-------~~~~i~isd~v 42 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKT-------GLEYIEISDLV 42 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHh-------CCceEehhhHH
Confidence 36789999999999999999887 47888866553
No 181
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=96.99 E-value=0.021 Score=54.52 Aligned_cols=36 Identities=31% Similarity=0.413 Sum_probs=29.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
++.++++|-||+||||+.+...+.+- ...++|-.++
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~------~~~ivNyG~~ 39 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELV------KHKIVNYGDL 39 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHh------hceeeeHhHH
Confidence 68999999999999999999988861 2566776555
No 182
>PHA03132 thymidine kinase; Provisional
Probab=96.97 E-value=0.024 Score=63.10 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=23.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
..+|.|-|..||||||+++.|.+.+
T Consensus 257 ~~fIv~EGidGsGKTTlik~L~e~l 281 (580)
T PHA03132 257 ACFLFLEGVMGVGKTTLLNHMRGIL 281 (580)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999999886
No 183
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.92 E-value=0.0046 Score=66.36 Aligned_cols=45 Identities=16% Similarity=0.333 Sum_probs=35.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 216 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike 216 (477)
..|.++++.||+||||||++..|+..+. ...+..+.+++.|.++.
T Consensus 221 ~~~~vi~lvGptGvGKTTtaaKLA~~~~-~~~G~~V~Lit~Dt~R~ 265 (432)
T PRK12724 221 NQRKVVFFVGPTGSGKTTSIAKLAAKYF-LHMGKSVSLYTTDNYRI 265 (432)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH-HhcCCeEEEecccchhh
Confidence 3478999999999999999999987542 12234577899999864
No 184
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.92 E-value=0.0084 Score=62.22 Aligned_cols=140 Identities=19% Similarity=0.277 Sum_probs=84.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcC----------CCCC----chhhHH
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK----------GHHD----DMLQTA 237 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~----------g~p~----d~~~~a 237 (477)
+-++++|.|+.|||||-++-.|+.++ +..+||+|-+. +|+++.=. |.|. ......
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf-------~~EIINsDkmQ----vYkGldivTnK~t~~e~~gVPHHLlg~l~~~~ 74 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRF-------PGEIINSDKMQ----VYKGLDIVTNKITLQERKGVPHHLLGHLHPEA 74 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhC-------Cceeeccccee----eecCcccccccCChhhcCCCChHHhCcCChHh
Confidence 35799999999999999999999997 47899999883 23332110 1110 000011
Q ss_pred HHHhHhHHHHHHHHHHHHHhCCCc-EEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccch
Q 011773 238 ELVHQSSTDAASSLLVTALNEGRD-VIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEE 316 (477)
Q Consensus 238 e~v~~~a~~la~~li~~aL~~G~s-VIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~ 316 (477)
++...+....+...++...+.|+- +|.-||++. +..++.. . ..| +. | |....
T Consensus 75 e~t~~~F~~~a~~aie~I~~rgk~PIv~GGs~~y---i~al~~~---~------~d~--~~--d---------p~~~~-- 127 (348)
T KOG1384|consen 75 EYTAGEFEDDASRAIEEIHSRGKLPIVVGGSNSY---LQALLSK---R------FDP--KI--D---------PFSSN-- 127 (348)
T ss_pred hccHHHHHHHHHHHHHHHHhCCCCCEEeCCchhh---HHHHhhc---C------CCc--cc--C---------ccccc--
Confidence 333333446677788888988885 555577663 3333221 0 000 00 0 00000
Q ss_pred hhHhhhhhhhccCCCceEEEEEEecCHHHHHHHHHHhhh
Q 011773 317 DYQQKENRQVFSRKPYRIELVGVVCDAYLAVVRGIRRAI 355 (477)
Q Consensus 317 ~~~~~~~~~~~~~~pY~I~lv~V~~d~elav~Rv~~R~~ 355 (477)
.+.....-+|.--++.|+++..+.-.|+-.|+.
T Consensus 128 ------~g~~pS~lryd~c~lWlda~~~VL~~~l~~RVD 160 (348)
T KOG1384|consen 128 ------TGSIPSELRYDCCFLWLDADQAVLFERLDKRVD 160 (348)
T ss_pred ------CCCCCcccccceEEEEEecchHHHHHHHHHHHH
Confidence 000112336888889999999999999999974
No 185
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.91 E-value=0.00067 Score=68.34 Aligned_cols=128 Identities=18% Similarity=0.151 Sum_probs=61.9
Q ss_pred cccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccccc-------chHHH-HHHhcCCCCCc
Q 011773 161 DVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE-------TDVIY-RALSSKGHHDD 232 (477)
Q Consensus 161 ~v~~~~~~~~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike-------~d~ir-k~Ls~~g~p~d 232 (477)
+++..+.+...+..+|.|+||||+||||+...|...+- +.+..+.+|--|-=.. -|-+| ..++. .++-
T Consensus 17 ~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~--~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~--d~~v 92 (266)
T PF03308_consen 17 ELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELR--ERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSR--DPGV 92 (266)
T ss_dssp HHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHH--HTT--EEEEEE-GGGGCC---SS--GGGCHHHHT--STTE
T ss_pred HHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHh--hcCCceEEEEECCCCCCCCCcccccHHHhcCcCC--CCCE
Confidence 33444333345678999999999999999999988753 3344455554332100 00000 11221 1211
Q ss_pred hhh-HHHHHh-HhHHHHHHHHHHHHHhCCCcE-EEeCCCCCHHHHHHHHHHHhccccccccccccce
Q 011773 233 MLQ-TAELVH-QSSTDAASSLLVTALNEGRDV-IMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYK 296 (477)
Q Consensus 233 ~~~-~ae~v~-~~a~~la~~li~~aL~~G~sV-IiDgT~s~~~~re~lialar~~h~~~y~~~pGY~ 296 (477)
+.+ .+..-+ .-........+.-+-..|.++ ++||+=-.....+ .+.-++...+.+.||+=
T Consensus 93 fIRS~atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~----I~~~aD~~v~v~~Pg~G 155 (266)
T PF03308_consen 93 FIRSMATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVD----IADMADTVVLVLVPGLG 155 (266)
T ss_dssp EEEEE---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHH----HHTTSSEEEEEEESSTC
T ss_pred EEeecCcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHH----HHHhcCeEEEEecCCCc
Confidence 100 000000 011123334555566689986 5588876665544 33444566677777653
No 186
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.90 E-value=0.0011 Score=63.12 Aligned_cols=23 Identities=39% Similarity=0.423 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
+|+|+|.||+||||+++.|. .++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg 24 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELG 24 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhC
Confidence 68999999999999999999 664
No 187
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.89 E-value=0.0017 Score=68.18 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhcCCCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 140 VFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 140 ~~~~l~ee~~~~~~~~~~~~~~v~~~~~~~~~~P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
+...|++-++..+.. . ..+.++++|+|||||||||+|+.|+..+.
T Consensus 59 ~i~~lv~~l~~~a~g-------------~-~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 59 AIERFVNYFKSAAQG-------------L-EERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred HHHHHHHHHHHHHhc-------------C-CCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356666666655532 1 23468899999999999999999999874
No 188
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.87 E-value=0.0011 Score=67.38 Aligned_cols=53 Identities=21% Similarity=0.176 Sum_probs=38.0
Q ss_pred ccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 160 TDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 160 ~~v~~~~~~~~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
..++..+......+.+|.|+|++||||||++..+...+. ..+..+.+|+.|..
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~--~~~~~v~~i~~D~~ 73 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELR--RRGLKVAVIAVDPS 73 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEecCCC
Confidence 344555544456788999999999999999999887642 22345678888854
No 189
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=96.86 E-value=0.0015 Score=70.12 Aligned_cols=44 Identities=16% Similarity=0.230 Sum_probs=34.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
...|.+|.|+|++||||||+++.|...+. ..+.....|+-|++-
T Consensus 209 ~~~PlIIGIsG~qGSGKSTLa~~L~~lL~--~~g~~vgvISiDDfY 252 (460)
T PLN03046 209 DIPPLVIGFSAPQGCGKTTLVFALDYLFR--VTGRKSATLSIDDFY 252 (460)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhc--ccCCceEEEEECCcc
Confidence 34799999999999999999999976542 112346778888873
No 190
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.83 E-value=0.0019 Score=69.46 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=36.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 216 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike 216 (477)
..|.+|+++|++|+||||++..|+..+. ..+..+.+|++|.++.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~--~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFK--KKGLKVGLVAADTYRP 136 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEecCCCCCH
Confidence 4699999999999999999999987652 3344688999999864
No 191
>PLN02796 D-glycerate 3-kinase
Probab=96.82 E-value=0.0016 Score=68.13 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=33.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
..|.+|.|+|++||||||+++.|...+. ..+.....|+.|.+-
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~--~~g~~~g~IsiDdfY 140 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFN--ATGRRAASLSIDDFY 140 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhc--ccCCceeEEEECCcc
Confidence 5699999999999999999999988763 111235677788773
No 192
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.78 E-value=0.0027 Score=65.44 Aligned_cols=85 Identities=21% Similarity=0.346 Sum_probs=54.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcC----------CCCC---chhhHH-
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK----------GHHD---DMLQTA- 237 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~----------g~p~---d~~~~a- 237 (477)
.|.+|+|+||.|||||-+|-.|+++++ ..+||.|... +|++|.=. +.|. +.....
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~-------~eIIs~DSmQ----vYr~mdIGTAKps~~e~~~vpHhliDi~~p~e 70 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLG-------GEIISLDSMQ----VYRGLDIGTAKPSLEELAGVPHHLIDIRDPTE 70 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcC-------CcEEecchhh----hcCCCcccCCCCCHHHHcCCCEEEecccCccc
Confidence 478999999999999999999999984 7899999872 34443210 1110 100000
Q ss_pred HHHhHhHHHHHHHHHHHHHhCCCcEEEe-CC
Q 011773 238 ELVHQSSTDAASSLLVTALNEGRDVIMD-GT 267 (477)
Q Consensus 238 e~v~~~a~~la~~li~~aL~~G~sVIiD-gT 267 (477)
.+.-....+.+...+......|+-.|+. ||
T Consensus 71 ~ysa~~f~~~a~~~i~~i~~rgk~pIlVGGT 101 (308)
T COG0324 71 SYSAAEFQRDALAAIDDILARGKLPILVGGT 101 (308)
T ss_pred cccHHHHHHHHHHHHHHHHhCCCCcEEEccH
Confidence 1111123356667888999999765555 55
No 193
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.77 E-value=0.0011 Score=67.96 Aligned_cols=128 Identities=18% Similarity=0.130 Sum_probs=70.6
Q ss_pred ccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccccc-------chHHH-HHHhcCCCCC
Q 011773 160 TDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE-------TDVIY-RALSSKGHHD 231 (477)
Q Consensus 160 ~~v~~~~~~~~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike-------~d~ir-k~Ls~~g~p~ 231 (477)
++++....+...++.+|.|+|+|||||||+...|..++. +.+..+.+|.-|-=.. -|-+| ..++. +|+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~--~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~--~~~ 113 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELR--ERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAV--DPG 113 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHH--HCCcEEEEEEECCCCCCCCccccccHhhHHhhcc--CCC
Confidence 455555545567899999999999999999999988863 4444455554443211 01111 11211 111
Q ss_pred chhh---HHHHHhHhHHHHHHHHHHHHHhCCCcE-EEeCCCCCHHHHHHHHHHHhccccccccccccce
Q 011773 232 DMLQ---TAELVHQSSTDAASSLLVTALNEGRDV-IMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYK 296 (477)
Q Consensus 232 d~~~---~ae~v~~~a~~la~~li~~aL~~G~sV-IiDgT~s~~~~re~lialar~~h~~~y~~~pGY~ 296 (477)
-+.+ +... -....+.....+.-+=..|.++ |+||+=-..+..+ +..++ +-..|.+.||+=
T Consensus 114 vFiRs~~srG~-lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~-I~~~a---Dt~~~v~~pg~G 177 (323)
T COG1703 114 VFIRSSPSRGT-LGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVD-IANMA---DTFLVVMIPGAG 177 (323)
T ss_pred eEEeecCCCcc-chhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhH-Hhhhc---ceEEEEecCCCC
Confidence 1100 0000 0112233445666677789986 5588877666544 33333 445666777653
No 194
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.72 E-value=0.013 Score=57.89 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=28.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
.+++|.||+|+|||.+|-.+++.++ .++|+.|-+.
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g-------~pvI~~Driq 36 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTG-------APVISLDRIQ 36 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH---------EEEEE-SGG
T ss_pred cEEEEECCCCCChhHHHHHHHHHhC-------CCEEEeccee
Confidence 4789999999999999999999985 7899999884
No 195
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=96.71 E-value=0.012 Score=56.11 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=23.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+.++|.+.|||||||-|+.......+
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l 29 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARL 29 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHh
Confidence 57899999999999999999988876
No 196
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.66 E-value=0.0022 Score=64.73 Aligned_cols=45 Identities=16% Similarity=0.334 Sum_probs=34.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
..|.+|+++||+||||||++..|+..+-....+..+.+|+.|.++
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 458899999999999999999998765211012467899999874
No 197
>PRK13768 GTPase; Provisional
Probab=96.65 E-value=0.0024 Score=63.54 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=32.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
++.+++++|++||||||++..++..+. ..+..+.+||.|.-
T Consensus 1 ~~~~i~v~G~~G~GKTt~~~~~~~~l~--~~g~~v~~i~~D~~ 41 (253)
T PRK13768 1 MMYIVFFLGTAGSGKTTLTKALSDWLE--EQGYDVAIVNLDPA 41 (253)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHH--hcCCceEEEECCCc
Confidence 478999999999999999998887652 33456788888754
No 198
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.64 E-value=0.002 Score=56.73 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=28.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+++|.|+||+||||++..++.... ..+..+.+++.+.-
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~e~~ 38 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA--TKGGKVVYVDIEEE 38 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH--hcCCEEEEEECCcc
Confidence 368999999999999999987652 23345777877654
No 199
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.64 E-value=0.0023 Score=58.42 Aligned_cols=28 Identities=25% Similarity=0.472 Sum_probs=25.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFW 199 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~ 199 (477)
...+|++.|++||||||+++.+++.+++
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3568999999999999999999999864
No 200
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.63 E-value=0.0068 Score=57.87 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+|+++||+||||||+...++..+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999988775
No 201
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.62 E-value=0.0027 Score=53.96 Aligned_cols=41 Identities=29% Similarity=0.444 Sum_probs=30.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.+..+++.|++|+||||+++.+...+. .......+++...+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~ 58 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDL 58 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhh
Confidence 356788999999999999999998762 22234566666555
No 202
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.61 E-value=0.0054 Score=66.82 Aligned_cols=45 Identities=16% Similarity=0.320 Sum_probs=34.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
..+.+++|.||||+||||.+..|+..+-.......+.+|+.|.++
T Consensus 254 ~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~R 298 (484)
T PRK06995 254 DRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYR 298 (484)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccc
Confidence 347899999999999999999998765221112256789999874
No 203
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.59 E-value=0.019 Score=59.86 Aligned_cols=90 Identities=19% Similarity=0.317 Sum_probs=54.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHH-HHHHhcC-CCCCchhhHHHHHhHhHHHH
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVI-YRALSSK-GHHDDMLQTAELVHQSSTDA 247 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~i-rk~Ls~~-g~p~d~~~~ae~v~~~a~~l 247 (477)
..+|.+|++.|.||+||||-...|+..+- ..+..+.+.-+|.||..-.. -+.+... |.+- . .... .......
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~--~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~v--I-~~~~-G~DpAaV 209 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLK--QQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPV--I-SGKE-GADPAAV 209 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHH--HCCCeEEEEecchHHHHHHHHHHHHHHHhCCeE--E-ccCC-CCCcHHH
Confidence 46799999999999999998888887652 44556778889999743111 0101110 1100 0 0000 0111224
Q ss_pred HHHHHHHHHhCCCcEEEe
Q 011773 248 ASSLLVTALNEGRDVIMD 265 (477)
Q Consensus 248 a~~li~~aL~~G~sVIiD 265 (477)
+...++.+..+|.+|++=
T Consensus 210 afDAi~~Akar~~Dvvli 227 (340)
T COG0552 210 AFDAIQAAKARGIDVVLI 227 (340)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 455788899999998663
No 204
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.59 E-value=0.0063 Score=64.60 Aligned_cols=46 Identities=15% Similarity=0.261 Sum_probs=36.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhcccc--CCCCCeEEEeCccccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS--GAATNAVVVEADAFKE 216 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~--~~~~~~vvIdaD~Ike 216 (477)
..|.+|++.||+|+||||.+..|+..+... ..+..+.+|++|.++.
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~ 219 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRI 219 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccH
Confidence 568999999999999999999998765211 1234678999999863
No 205
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.56 E-value=0.0027 Score=67.87 Aligned_cols=43 Identities=19% Similarity=0.273 Sum_probs=35.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
..|..|++.||+||||||++..|+..+. ..+..+.+|++|.++
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~--~~GkkVglI~aDt~R 281 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFH--GKKKTVGFITTDHSR 281 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHH--HcCCcEEEEecCCcc
Confidence 4578999999999999999999987652 344467899999986
No 206
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=96.54 E-value=0.002 Score=66.15 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=31.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+.+.+|+|+||.|||||.+|-.|+++. ..+||+|..
T Consensus 2 ~~~~ii~I~GpTasGKS~LAl~LA~~~--------~eIIsaDS~ 37 (300)
T PRK14729 2 KENKIVFIFGPTAVGKSNILFHFPKGK--------AEIINVDSI 37 (300)
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhC--------CcEEeccHH
Confidence 345699999999999999999999883 489999987
No 207
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.53 E-value=0.0022 Score=51.30 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
.+.+|.|+|||||||+..++.--+
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999987654
No 208
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.52 E-value=0.0028 Score=62.57 Aligned_cols=51 Identities=22% Similarity=0.348 Sum_probs=37.5
Q ss_pred cccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 161 DVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 161 ~v~~~~~~~~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+|...+...-.+.-++.|.|||||||||+.+.|-.- +.+..|-+.|+.+.+
T Consensus 16 ~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~L---E~~~~G~I~i~g~~~ 66 (240)
T COG1126 16 EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGL---EEPDSGSITVDGEDV 66 (240)
T ss_pred EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCC---cCCCCceEEECCEec
Confidence 444444444466789999999999999999998542 345667888888544
No 209
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.51 E-value=0.0039 Score=59.91 Aligned_cols=40 Identities=18% Similarity=0.429 Sum_probs=30.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
|..+.|+|++||||||+.+.+...+. +..+..++..|...
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~---~~~~~~~~~~d~~~ 40 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALR---QKYQLAVITNDIYT 40 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhC---cCCcEEEEeCCcCC
Confidence 67899999999999999999988753 12345667766653
No 210
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.49 E-value=0.033 Score=63.83 Aligned_cols=44 Identities=20% Similarity=0.326 Sum_probs=33.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
.+.+|++.||||+||||.+..|+..+-.......+.+|++|.++
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R 227 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR 227 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc
Confidence 47899999999999999999998765111112357789999986
No 211
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.48 E-value=0.004 Score=59.45 Aligned_cols=42 Identities=14% Similarity=0.312 Sum_probs=33.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||++.+++.... ..+..+.+|+++.-
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~--~~g~~v~yi~~e~~ 58 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETA--GQGKKVAYIDTEGL 58 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEECCCC
Confidence 4578999999999999999999987642 23456788987743
No 212
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.48 E-value=0.0053 Score=61.84 Aligned_cols=38 Identities=32% Similarity=0.433 Sum_probs=30.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 213 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~ 213 (477)
+.|.++++.||+|+||||+++.++..++ .+...+|+..
T Consensus 41 ~~~~~lll~G~~G~GKT~la~~l~~~~~-----~~~~~i~~~~ 78 (316)
T PHA02544 41 RIPNMLLHSPSPGTGKTTVAKALCNEVG-----AEVLFVNGSD 78 (316)
T ss_pred CCCeEEEeeCcCCCCHHHHHHHHHHHhC-----ccceEeccCc
Confidence 4578999999999999999999988763 3456666654
No 213
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.47 E-value=0.0028 Score=59.66 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=27.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 213 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~ 213 (477)
++++.|++||||||+|..++..++ ....+|.+..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~-----~~~~~iat~~ 36 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG-----LQVLYIATAQ 36 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC-----CCcEeCcCCC
Confidence 689999999999999999998863 3466776654
No 214
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.45 E-value=0.0035 Score=63.15 Aligned_cols=44 Identities=20% Similarity=0.190 Sum_probs=35.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 216 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike 216 (477)
-+...++.|-|||||||||+.+.+..-+. |..|.+.+|.-.+..
T Consensus 25 i~~G~i~~iiGpNG~GKSTLLk~l~g~l~---p~~G~V~l~g~~i~~ 68 (258)
T COG1120 25 IPKGEITGILGPNGSGKSTLLKCLAGLLK---PKSGEVLLDGKDIAS 68 (258)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCCchhh
Confidence 35678999999999999999999987653 456788998877743
No 215
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.42 E-value=0.0029 Score=62.68 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=24.8
Q ss_pred EEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 178 MGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 178 LaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+.||+||||||+++.+.+.+. ..+....+||-|--
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~--~~~~~~~~vNLDPa 35 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLE--SNGRDVYIVNLDPA 35 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHT--TT-S-EEEEE--TT
T ss_pred CCCCCCCCHHHHHHHHHHHHH--hccCCceEEEcchH
Confidence 579999999999999998763 44456788887754
No 216
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=96.42 E-value=0.0024 Score=73.83 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=31.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
..+|.|.||+||||||+++.|+++++ +.+||.+.+
T Consensus 34 ~~~i~idG~~gsGKst~~~~la~~l~-------~~~~~~g~~ 68 (863)
T PRK12269 34 TVIIALDGPAGSGKSSVCRLLASRLG-------AQCLNTGSF 68 (863)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC-------CcEEeHHHH
Confidence 36999999999999999999999985 689998887
No 217
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.42 E-value=0.0045 Score=58.64 Aligned_cols=42 Identities=12% Similarity=0.238 Sum_probs=33.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.+.|+|||||||++.+++.... ..+..+.+|+.+.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~--~~g~~v~yi~~e~~ 51 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAA--RQGKKVVYIDTEGL 51 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCC
Confidence 3468999999999999999999887542 23456899998864
No 218
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=96.40 E-value=0.13 Score=52.95 Aligned_cols=41 Identities=15% Similarity=0.362 Sum_probs=32.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++|.+-|+.|||||++|++|++++++ ..++-++.|.|
T Consensus 68 ~enSkvI~VeGnI~sGK~klAKelAe~Lgf----~hfP~~~~d~i 108 (393)
T KOG3877|consen 68 HENSKVIVVEGNIGSGKTKLAKELAEQLGF----VHFPEFRMDDI 108 (393)
T ss_pred cccceEEEEeCCcccCchhHHHHHHHHhCC----cccccccccce
Confidence 356789999999999999999999999975 23333455554
No 219
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.35 E-value=0.0045 Score=58.75 Aligned_cols=41 Identities=27% Similarity=0.439 Sum_probs=31.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+... .+..|.+.++...+
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~ 65 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL---GPTSGEVLVDGKDL 65 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEECCEEc
Confidence 557899999999999999999998654 23456677766554
No 220
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.34 E-value=0.004 Score=57.33 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=29.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+++|.|+||+||||++..++... ...+..+.+++.++-
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~--~~~g~~v~~~s~e~~ 38 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAG--LARGEPGLYVTLEES 38 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH--HHCCCcEEEEECCCC
Confidence 37899999999999999887653 234567888987754
No 221
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.31 E-value=0.0044 Score=58.04 Aligned_cols=41 Identities=27% Similarity=0.381 Sum_probs=30.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|..-. .+..|.+.++...+
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~---~~~~G~i~~~g~~~ 56 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGLL---RPQSGAVLIDGEPL 56 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceeEEECCEEc
Confidence 457799999999999999999997643 23345666665443
No 222
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.29 E-value=0.0029 Score=62.30 Aligned_cols=36 Identities=28% Similarity=0.444 Sum_probs=29.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.+.|.++++.|+||+||||+|+.+.. ...+++.|.-
T Consensus 9 ~~~~~~~liyG~~G~GKtt~a~~~~~---------~~~~~~~d~~ 44 (220)
T TIGR01618 9 KRIPNMYLIYGKPGTGKTSTIKYLPG---------KTLVLSFDMS 44 (220)
T ss_pred CCCCcEEEEECCCCCCHHHHHHhcCC---------CCEEEecccc
Confidence 35588899999999999999998742 3678888875
No 223
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.28 E-value=0.0045 Score=59.01 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=31.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+..+. +..|-+.++...+
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~ 68 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLDR---PTSGEVRVDGTDI 68 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCcC---CCceeEEECCEeh
Confidence 5578999999999999999999986542 3445666765444
No 224
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=96.26 E-value=0.014 Score=58.14 Aligned_cols=80 Identities=18% Similarity=0.152 Sum_probs=48.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCC-CCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhH-HHHHHHHH
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAA-TNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSS-TDAASSLL 252 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~-~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a-~~la~~li 252 (477)
||+++|.|.|||||.|+.|.+.+- +.+ ...+.|.-|+- .+.+++.. + ++.-.+.+ ...+.+.+
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~--~~~~K~~v~ii~des----------lg~~~ns~--y-~~s~~EK~lRg~L~S~v 67 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALK--ERGTKQSVRIIDDES----------LGIEKNSN--Y-GDSQAEKALRGKLRSAV 67 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHH--hhcccceEEEechhh----------cCCCCccc--c-cccHHHHHHHHHHHHHH
Confidence 688999999999999999988863 233 22444433332 01111110 0 00101222 24456677
Q ss_pred HHHHhCCCcEEEeCCCC
Q 011773 253 VTALNEGRDVIMDGTLS 269 (477)
Q Consensus 253 ~~aL~~G~sVIiDgT~s 269 (477)
++.+..|.-||+|+-..
T Consensus 68 ~R~Lsk~~iVI~DslNy 84 (281)
T KOG3062|consen 68 DRSLSKGDIVIVDSLNY 84 (281)
T ss_pred HhhcccCcEEEEecccc
Confidence 88889999999998654
No 225
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.26 E-value=0.0049 Score=58.60 Aligned_cols=41 Identities=27% Similarity=0.404 Sum_probs=31.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+..+ .+..|-+.++...+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~---~~~~G~i~~~g~~~ 66 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL---TPSRGQVRIAGEDV 66 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEEc
Confidence 457899999999999999999998654 23455667766544
No 226
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.26 E-value=0.0046 Score=57.51 Aligned_cols=34 Identities=26% Similarity=0.417 Sum_probs=27.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
..-++|.|++||||||++..|.++ ++.+|.-|.+
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~--------g~~lvaDD~v 47 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR--------GHRLVADDRV 47 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc--------CCeEEECCEE
Confidence 567999999999999999999887 2566655544
No 227
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=96.26 E-value=0.0047 Score=60.34 Aligned_cols=38 Identities=18% Similarity=0.357 Sum_probs=33.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
+..+|.|+|.+.|||||+|+.|.+.+ +++.+|+-|+|=
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f------~~~~lIhqDDFy 40 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFF------PGCSLIHQDDFY 40 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHc------cCCeeecccccc
Confidence 35789999999999999999999887 378899999983
No 228
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.25 E-value=0.0042 Score=64.78 Aligned_cols=45 Identities=18% Similarity=0.321 Sum_probs=36.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 217 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~ 217 (477)
-+..-++++.|||||||||+.+.++-- ..+..|-++|+..++...
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr~IAGL---e~~~~G~I~i~g~~vt~l 70 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLRMIAGL---EEPTSGEILIDGRDVTDL 70 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC---CCCCCceEEECCEECCCC
Confidence 355779999999999999999999843 456678899988887543
No 229
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.25 E-value=0.0048 Score=58.47 Aligned_cols=41 Identities=17% Similarity=0.305 Sum_probs=31.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+... .+..|.+.++...+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~ 64 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLI---KESSGSILLNGKPI 64 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC---CCCceEEEECCEEh
Confidence 557899999999999999999998654 23455666765544
No 230
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.25 E-value=0.005 Score=58.49 Aligned_cols=41 Identities=17% Similarity=0.252 Sum_probs=31.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+..+. +..+-+.++...+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~v~~~g~~~ 64 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLEE---PTSGRIYIGGRDV 64 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEC
Confidence 4578999999999999999999987542 3345666665444
No 231
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.017 Score=60.19 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=24.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
-++|++.||||.||||++++|++++.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLS 202 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLS 202 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhhe
Confidence 47999999999999999999999974
No 232
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.24 E-value=0.0052 Score=58.48 Aligned_cols=41 Identities=20% Similarity=0.332 Sum_probs=31.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+... .+..|.+.++...+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~p~~G~i~~~g~~~ 64 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLE---RPDSGEILIDGRDV 64 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEc
Confidence 457899999999999999999998653 23445666765444
No 233
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.24 E-value=0.014 Score=62.01 Aligned_cols=28 Identities=21% Similarity=0.169 Sum_probs=24.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
-....|+|.|++||||||+++.|+..++
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~g 244 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIFN 244 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHhC
Confidence 3457899999999999999999999874
No 234
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.23 E-value=0.0054 Score=58.54 Aligned_cols=41 Identities=22% Similarity=0.239 Sum_probs=31.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+...++.|.|+|||||||+.+.|+.-.. +..|-+.++...+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~ 66 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGELR---PTSGTAYINGYSI 66 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEec
Confidence 5577999999999999999999986542 3445666765544
No 235
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.22 E-value=0.0051 Score=58.36 Aligned_cols=41 Identities=32% Similarity=0.469 Sum_probs=30.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+..+. +..|-+.++...+
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i 65 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEEL---PTSGTIRVNGQDV 65 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEc
Confidence 5578999999999999999999986542 3445566665443
No 236
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=96.22 E-value=0.011 Score=62.35 Aligned_cols=80 Identities=20% Similarity=0.172 Sum_probs=61.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHH
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 249 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~ 249 (477)
...+-+|++.|-+||||||++...... .++.++|+|.+.. |. . .-
T Consensus 266 ~~~~eiV~~vgfp~sGks~f~a~~~~~-------~~y~~vn~d~lg~-------------~~-------~--------C~ 310 (422)
T KOG2134|consen 266 DGHGEIVVAVGFPGSGKSTFAAKRVVP-------NGYKIVNADTLGT-------------PQ-------N--------CL 310 (422)
T ss_pred CCCCcEEEEEecCCCCcchhhhhhccc-------CceeEeecccCCC-------------ch-------h--------hH
Confidence 344589999999999999999876554 3689999999821 10 0 01
Q ss_pred HHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHhcc
Q 011773 250 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNV 284 (477)
Q Consensus 250 ~li~~aL~~G~sVIiDgT~s~~~~re~lialar~~ 284 (477)
....+++..|.+||+|.|.-....+..+++.+++.
T Consensus 311 ~~~~e~l~~~~sVvidnt~pd~~sr~~~~~~a~e~ 345 (422)
T KOG2134|consen 311 LANAEALKHGKSVVIDNTNPDAESRKYYLDCATER 345 (422)
T ss_pred HHHHHHhhcccEEeeCCCCcchHHHHHHhhhHHHh
Confidence 14456899999999999999998988888887654
No 237
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.22 E-value=0.0047 Score=58.72 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=23.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
.+|.++.++|++||||||+++.|...+
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHH
Confidence 356689999999999999999998876
No 238
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.21 E-value=0.0036 Score=54.12 Aligned_cols=26 Identities=31% Similarity=0.609 Sum_probs=19.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
...++++.|++|+||||+++.+...+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998875
No 239
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.21 E-value=0.0032 Score=55.24 Aligned_cols=41 Identities=20% Similarity=0.320 Sum_probs=31.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
...+++|.|+|||||||+.+.|..... +..+.+.++...+.
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~~---~~~G~i~~~~~~~~ 50 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLLP---PDSGSILINGKDIS 50 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSSH---ESEEEEEETTEEGT
T ss_pred CCCEEEEEccCCCccccceeeeccccc---cccccccccccccc
Confidence 457899999999999999999887652 23456667765553
No 240
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.21 E-value=0.0052 Score=59.58 Aligned_cols=41 Identities=24% Similarity=0.295 Sum_probs=31.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+... .+..|.+.++...+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~p~~G~i~~~g~~i 65 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRLY---VAQEGQISVAGHDL 65 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc---CCCceEEEECCEEc
Confidence 567899999999999999999998553 23456677766554
No 241
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.21 E-value=0.0052 Score=59.46 Aligned_cols=41 Identities=27% Similarity=0.410 Sum_probs=31.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+..+ .+..|-+.++...+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~---~p~~G~i~~~g~~~ 64 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLL---RPDSGEVLIDGEDI 64 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEc
Confidence 557899999999999999999998654 23445667766554
No 242
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.20 E-value=0.0052 Score=59.32 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=31.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+..+. +..|-+.++...+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~ 64 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGFLR---PTSGSVLFDGEDI 64 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEEC
Confidence 5578999999999999999999986542 3345667766554
No 243
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.20 E-value=0.0044 Score=59.00 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=31.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.+..++|.|++|+||||+++.+..... .++..+.+++.+.+
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~--~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAE--ERGKSAIYLPLAEL 77 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEeHHHH
Confidence 366889999999999999999987652 22345778877766
No 244
>PF13173 AAA_14: AAA domain
Probab=96.19 E-value=0.0064 Score=53.68 Aligned_cols=40 Identities=25% Similarity=0.487 Sum_probs=32.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
..+++|.||.|+||||+++++++.+. +..+..++|.|+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~ 41 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPR 41 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHH
Confidence 35789999999999999999998762 23467889888773
No 245
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.19 E-value=0.0037 Score=56.94 Aligned_cols=28 Identities=32% Similarity=0.610 Sum_probs=19.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
...|.+++|.|++|+||||+.+.+...+
T Consensus 21 ~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 21 SGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp S-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4668999999999999999999988875
No 246
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.19 E-value=0.0058 Score=58.00 Aligned_cols=41 Identities=20% Similarity=0.329 Sum_probs=30.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+.... +..|-+.++...+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~ 64 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGIIL---PDSGEVLFDGKPL 64 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCCch
Confidence 5678999999999999999999986542 3345566665433
No 247
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.0046 Score=61.52 Aligned_cols=47 Identities=19% Similarity=0.282 Sum_probs=33.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 217 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~ 217 (477)
-+..-++.|.|||||||||++..|.-+-.. +...+-+.++..+|.+.
T Consensus 27 v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y-~Vt~G~I~~~GedI~~l 73 (251)
T COG0396 27 VKEGEVHAIMGPNGSGKSTLAYTIMGHPKY-EVTEGEILFDGEDILEL 73 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCc-eEecceEEECCcccccC
Confidence 356789999999999999999999876321 22234455666666543
No 248
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.17 E-value=0.0062 Score=58.15 Aligned_cols=41 Identities=24% Similarity=0.317 Sum_probs=30.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+.... +..|-+.++...+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~ 64 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGLLP---PRSGSIRFDGRDI 64 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEc
Confidence 5678999999999999999999876542 3345666765444
No 249
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.17 E-value=0.0059 Score=58.31 Aligned_cols=41 Identities=20% Similarity=0.312 Sum_probs=31.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+... .+..|-+.++...+
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~---~~~~G~i~~~g~~~ 69 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGLD---NPTSGEVLFNGQSL 69 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEEh
Confidence 567899999999999999999998654 23455666765443
No 250
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.17 E-value=0.0059 Score=58.89 Aligned_cols=41 Identities=24% Similarity=0.312 Sum_probs=31.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+..+. +..|.+.++...+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~ 69 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLER---PTSGSVLVDGTDL 69 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEc
Confidence 5578999999999999999999986642 3446677765444
No 251
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.17 E-value=0.0056 Score=59.33 Aligned_cols=41 Identities=24% Similarity=0.375 Sum_probs=31.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+..+ .+..|-+.++...+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~ 66 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLV---EPSSGSILLEGTDI 66 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc---CCCccEEEECCEEh
Confidence 557899999999999999999998653 23345677766444
No 252
>PRK04296 thymidine kinase; Provisional
Probab=96.16 E-value=0.0065 Score=57.73 Aligned_cols=37 Identities=24% Similarity=0.224 Sum_probs=28.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 211 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIda 211 (477)
..+++++|+|||||||++..++.++. ..+..+.++.+
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~--~~g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYE--ERGMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHH--HcCCeEEEEec
Confidence 56899999999999999999888752 23445666754
No 253
>PHA00729 NTP-binding motif containing protein
Probab=96.16 E-value=0.004 Score=61.59 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=22.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
..-|+|.|+||+||||+|..|+..+
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999886
No 254
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.16 E-value=0.0062 Score=57.76 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=31.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+..+. +..|-+.++...+
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~ 64 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLEE---PDSGTIIIDGLKL 64 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEC
Confidence 4578999999999999999999986542 3445667765444
No 255
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.15 E-value=0.0059 Score=54.00 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=25.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcc
Q 011773 176 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 213 (477)
Q Consensus 176 IlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~ 213 (477)
++|.|++|+|||++++.+++.++ ..+..++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~-----~~~~~i~~~~ 34 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG-----RPVIRINCSS 34 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT-----CEEEEEE-TT
T ss_pred EEEECCCCCCHHHHHHHHHHHhh-----cceEEEEecc
Confidence 68999999999999999999874 3455554443
No 256
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.15 E-value=0.006 Score=58.63 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=31.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+... .+..|.+.++...+
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~---~p~~G~i~~~g~~~ 74 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLD---DGSSGEVSLVGQPL 74 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC---CCCCeeEEECCEEc
Confidence 567899999999999999999998654 23445667765444
No 257
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=96.15 E-value=0.059 Score=54.66 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHh
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
.+|+|+|.|||||||.++.|-+-
T Consensus 2 ~lvIVTGlSGAGKsvAl~~lEDl 24 (286)
T COG1660 2 RLVIVTGLSGAGKSVALRVLEDL 24 (286)
T ss_pred cEEEEecCCCCcHHHHHHHHHhc
Confidence 47999999999999999988654
No 258
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.15 E-value=0.0065 Score=58.39 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=31.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhcc--ccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESF--WSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~--~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+.... ...+..|-+.++...+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~ 69 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDI 69 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEh
Confidence 4578999999999999999999986540 0013345677766554
No 259
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.14 E-value=0.0061 Score=58.92 Aligned_cols=41 Identities=22% Similarity=0.339 Sum_probs=31.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+++.|+.-+ .+..|-++++...+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~ 65 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLV---EPTSGSVLIDGTDI 65 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc---CCCCceEEECCEec
Confidence 557899999999999999999998643 23345677766444
No 260
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.13 E-value=0.0062 Score=58.65 Aligned_cols=41 Identities=20% Similarity=0.298 Sum_probs=31.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+..+ .+..|-+.++...+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~ 64 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLL---PVKSGSIRLDGEDI 64 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCCEEEECCEEC
Confidence 567899999999999999999998654 23456677766544
No 261
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.13 E-value=0.0061 Score=58.32 Aligned_cols=41 Identities=20% Similarity=0.325 Sum_probs=31.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+...++.|.|+|||||||+.+.|+.... +..+-+.++...+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~ 69 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGLLK---PTSGSIIFDGKDL 69 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEc
Confidence 5678999999999999999999986542 3445667765544
No 262
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.13 E-value=0.0068 Score=53.42 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=27.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
...++.+.|+|||||||+++.+. . +.+.++.|++
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~-~--------G~i~~~g~di 47 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI-K--------RKHRLVGDDN 47 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh-C--------CeEEEeeEeH
Confidence 35899999999999999999987 2 2456777766
No 263
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.12 E-value=0.006 Score=58.45 Aligned_cols=40 Identities=25% Similarity=0.379 Sum_probs=30.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 213 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~ 213 (477)
....++.|.|+|||||||+.+.|+... .+..|.+.++.-.
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~ 67 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLE---RPTSGEVLVDGEP 67 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEE
Confidence 457899999999999999999998653 2344556665433
No 264
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.12 E-value=0.0061 Score=59.21 Aligned_cols=41 Identities=22% Similarity=0.279 Sum_probs=31.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+.... +..|-+.++...+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~ 66 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLER---PDSGTILFGGEDA 66 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEC
Confidence 5678999999999999999999986542 3445666665444
No 265
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.12 E-value=0.0066 Score=58.45 Aligned_cols=41 Identities=17% Similarity=0.271 Sum_probs=31.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+... .+..|-+.++...+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~ 64 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGLV---KPDSGKILLDGQDI 64 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEec
Confidence 457899999999999999999998654 23445677765544
No 266
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.12 E-value=0.0061 Score=58.14 Aligned_cols=41 Identities=24% Similarity=0.318 Sum_probs=30.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+.-.. +..|-+.++.-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~ 67 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIEK---PTRGKIRFNGQDL 67 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEeh
Confidence 5578999999999999999999986542 3345666665443
No 267
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.12 E-value=0.039 Score=57.08 Aligned_cols=98 Identities=24% Similarity=0.319 Sum_probs=58.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe-CcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHHHH
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-ADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLL 252 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvId-aD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~li 252 (477)
-+|+++||.||||||....+..... ... ...+|- -|-| +. +..... ....-.+ ++ .-+..+...+
T Consensus 126 GLILVTGpTGSGKSTTlAamId~iN--~~~-~~HIlTIEDPI-E~------vh~skk--slI~QRE-vG-~dT~sF~~aL 191 (353)
T COG2805 126 GLILVTGPTGSGKSTTLAAMIDYIN--KHK-AKHILTIEDPI-EY------VHESKK--SLINQRE-VG-RDTLSFANAL 191 (353)
T ss_pred ceEEEeCCCCCcHHHHHHHHHHHHh--ccC-CcceEEecCch-Hh------hhcchH--hhhhHHH-hc-ccHHHHHHHH
Confidence 5999999999999999888887753 111 122221 2222 11 110000 0000000 01 1123455678
Q ss_pred HHHHhCCCcEEEeCCCCCHHHHHHHHHHHhccc
Q 011773 253 VTALNEGRDVIMDGTLSWVPFVEQTIAMARNVH 285 (477)
Q Consensus 253 ~~aL~~G~sVIiDgT~s~~~~re~lialar~~h 285 (477)
..+|++.-+||+=|-+.+.+-+..-+..|.-.|
T Consensus 192 raALReDPDVIlvGEmRD~ETi~~ALtAAETGH 224 (353)
T COG2805 192 RAALREDPDVILVGEMRDLETIRLALTAAETGH 224 (353)
T ss_pred HHHhhcCCCEEEEeccccHHHHHHHHHHHhcCC
Confidence 889999999999999999988887777766554
No 268
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.12 E-value=0.006 Score=58.06 Aligned_cols=40 Identities=30% Similarity=0.369 Sum_probs=30.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 213 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~ 213 (477)
....++.|.|+|||||||+.+.|+... .+..+-+.++.-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~---~p~~G~i~~~g~~ 62 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLL---KPTSGSIRVFGKP 62 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC---CCCCCEEEECCcc
Confidence 567899999999999999999997653 2345566666543
No 269
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.11 E-value=0.006 Score=54.97 Aligned_cols=29 Identities=24% Similarity=0.496 Sum_probs=24.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFW 199 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~ 199 (477)
+...+|++.|+.||||||+++.+++.++.
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 44689999999999999999999999864
No 270
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.11 E-value=0.0063 Score=59.37 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=31.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+++.|+... .+..|-+.++...+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i 67 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLINRLI---DPTEGSILIDGVDI 67 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEEh
Confidence 457899999999999999999998654 23456677766554
No 271
>PF05729 NACHT: NACHT domain
Probab=96.11 E-value=0.0044 Score=55.08 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
++++|.|++|+||||+++.+...+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHH
Confidence 378999999999999999998765
No 272
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.09 E-value=0.007 Score=56.36 Aligned_cols=41 Identities=20% Similarity=0.369 Sum_probs=31.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+..+. +..+-+.++...+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~ 64 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLEE---PDSGSILIDGEDL 64 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEc
Confidence 4578999999999999999999986542 3345666766444
No 273
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.09 E-value=0.0062 Score=57.33 Aligned_cols=34 Identities=21% Similarity=0.322 Sum_probs=26.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 213 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~ 213 (477)
++++.||+||||||+|..++...+ ....++.+..
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~-----~~~~y~at~~ 34 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELG-----GPVTYIATAE 34 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcC-----CCeEEEEccC
Confidence 478999999999999999987642 4567775543
No 274
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.09 E-value=0.0069 Score=58.03 Aligned_cols=41 Identities=22% Similarity=0.255 Sum_probs=30.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+..+ .+..|-+.++...+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~---~~~~G~i~~~g~~~ 64 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTTLL---KPTSGRATVAGHDV 64 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEec
Confidence 457899999999999999999998653 23345566665444
No 275
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.09 E-value=0.0082 Score=57.69 Aligned_cols=42 Identities=12% Similarity=0.314 Sum_probs=33.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+...++.++|+|||||||++.+++... ...+..+++|+.+.+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~--~~~~~~v~yi~~e~~ 62 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEA--AKNGKKVIYIDTEGL 62 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEECCCC
Confidence 457899999999999999999998754 123457889998843
No 276
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.09 E-value=0.0071 Score=57.42 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=32.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+..+. +..+-+.++...+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~v~~~g~~~ 65 (204)
T PRK13538 25 NAGELVQIEGPNGAGKTSLLRILAGLAR---PDAGEVLWQGEPI 65 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEc
Confidence 5678999999999999999999987642 3456677766554
No 277
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.08 E-value=0.0068 Score=58.43 Aligned_cols=41 Identities=17% Similarity=0.231 Sum_probs=31.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+.... +..|.+.++...+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~ 66 (234)
T cd03251 26 PAGETVALVGPSGSGKSTLVNLIPRFYD---VDSGRILIDGHDV 66 (234)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccc---CCCCEEEECCEEh
Confidence 5678999999999999999999976542 3456677766544
No 278
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.08 E-value=0.007 Score=57.53 Aligned_cols=39 Identities=15% Similarity=0.309 Sum_probs=29.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.. ++.|.|+|||||||+.+.++..+ .+..|-+.++...+
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~ 63 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATLT---PPSSGTIRIDGQDV 63 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCCcc
Confidence 35 99999999999999999998653 23445666766544
No 279
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.08 E-value=0.0078 Score=56.76 Aligned_cols=41 Identities=17% Similarity=0.249 Sum_probs=31.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+.... +..|-+.++.-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i 64 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIMQ---PSSGNIYYKNCNI 64 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCccc
Confidence 4577999999999999999999987642 3455667765444
No 280
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.08 E-value=0.0069 Score=58.94 Aligned_cols=41 Identities=20% Similarity=0.342 Sum_probs=31.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+.... +..|.+.++...+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~ 65 (242)
T cd03295 25 AKGEFLVLIGPSGSGKTTTMKMINRLIE---PTSGEIFIDGEDI 65 (242)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCeEc
Confidence 5678999999999999999999986542 3446677776554
No 281
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.08 E-value=0.011 Score=58.77 Aligned_cols=38 Identities=26% Similarity=0.234 Sum_probs=28.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
.--+++.||||.||||+|..++.+++ .++..+++..+.
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~-----~~~~~~sg~~i~ 87 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELG-----VNFKITSGPAIE 87 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT-------EEEEECCC--
T ss_pred cceEEEECCCccchhHHHHHHHhccC-----CCeEeccchhhh
Confidence 44578999999999999999999985 467777776663
No 282
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.08 E-value=0.0088 Score=62.38 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=25.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
+-|-.+++.||+|+||||+|+.+++.+.
T Consensus 36 ~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 36 RIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred CCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 4477899999999999999999999874
No 283
>PRK04195 replication factor C large subunit; Provisional
Probab=96.08 E-value=0.0081 Score=64.95 Aligned_cols=40 Identities=20% Similarity=0.394 Sum_probs=32.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 217 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~ 217 (477)
+..++|.||||+||||+++.++..++| ....+|+.+.+..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~-----~~ielnasd~r~~ 78 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGW-----EVIELNASDQRTA 78 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCC-----CEEEEcccccccH
Confidence 678999999999999999999999864 5667777665433
No 284
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.07 E-value=0.028 Score=57.55 Aligned_cols=41 Identities=27% Similarity=0.455 Sum_probs=31.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 212 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD 212 (477)
.++|.+|++.|..|||||||...|-.++. .......+||-|
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~--~~~~ppYviNLD 56 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLH--AKKTPPYVINLD 56 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHh--hccCCCeEEeCC
Confidence 47799999999999999999999988764 222234567766
No 285
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.07 E-value=0.0044 Score=56.63 Aligned_cols=21 Identities=24% Similarity=0.623 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHh
Q 011773 176 LLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 176 IlLaGp~GSGKSTlAr~La~~ 196 (477)
|+|+|++|+||||+++.|++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 689999999999999999987
No 286
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.07 E-value=0.0068 Score=58.65 Aligned_cols=41 Identities=20% Similarity=0.307 Sum_probs=31.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+...++.|.|+|||||||+.+.|+.-+ .+..|.+.++...+
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~i 73 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGLD---TPTSGDVIFNGQPM 73 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC---CCCceEEEECCEEc
Confidence 557899999999999999999998654 23456677765444
No 287
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.06 E-value=0.0071 Score=57.45 Aligned_cols=41 Identities=22% Similarity=0.241 Sum_probs=31.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+... .+..|-+.++...+
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl~---~~~~G~i~~~g~~~ 62 (211)
T cd03298 22 AQGEITAIVGPSGSGKSTLLNLIAGFE---TPQSGRVLINGVDV 62 (211)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEEc
Confidence 456799999999999999999998654 23445677766554
No 288
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.06 E-value=0.0076 Score=56.90 Aligned_cols=41 Identities=22% Similarity=0.214 Sum_probs=31.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|..... +..+.+.++...+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~ 64 (198)
T TIGR01189 24 NAGEALQVTGPNGIGKTTLLRILAGLLR---PDSGEVRWNGTAL 64 (198)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEc
Confidence 4578999999999999999999987542 3445667766544
No 289
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.06 E-value=0.0074 Score=56.11 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=31.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.+.|+|||||||+.+.|+... .+..+.+.++...+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~ 66 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDL---KPQQGEITLDGVPV 66 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC---CCCCCEEEECCEEH
Confidence 567899999999999999999998654 23455666765443
No 290
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.05 E-value=0.0079 Score=57.02 Aligned_cols=41 Identities=20% Similarity=0.308 Sum_probs=31.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.++... .+..|-+.++...+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~ 64 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLI---KPDSGEITFDGKSY 64 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc---CCCceEEEECCCcc
Confidence 457899999999999999999998653 23445667766554
No 291
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.05 E-value=0.0051 Score=60.14 Aligned_cols=25 Identities=32% Similarity=0.709 Sum_probs=22.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+-+++|.|++||||||+++.+...+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 5678999999999999999999876
No 292
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=96.04 E-value=0.0057 Score=56.12 Aligned_cols=27 Identities=41% Similarity=0.417 Sum_probs=23.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
.|-+.+|.|+||+||||++.+|.-.++
T Consensus 18 ~~g~~vi~G~Ng~GKStil~ai~~~L~ 44 (202)
T PF13476_consen 18 SPGLNVIYGPNGSGKSTILEAIRYALG 44 (202)
T ss_dssp -SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 478999999999999999999977664
No 293
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=96.04 E-value=0.0072 Score=57.68 Aligned_cols=41 Identities=27% Similarity=0.304 Sum_probs=31.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+... .+..+-+.++...+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~ 62 (213)
T TIGR01277 22 ADGEIVAIMGPSGAGKSTLLNLIAGFI---EPASGSIKVNDQSH 62 (213)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCEEc
Confidence 457899999999999999999998654 23455677766544
No 294
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.03 E-value=0.0052 Score=58.18 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=22.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHH
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMK 195 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~ 195 (477)
-....++.+.|||||||||+.+.++.
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 35678999999999999999998863
No 295
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.03 E-value=0.0088 Score=55.42 Aligned_cols=41 Identities=22% Similarity=0.245 Sum_probs=31.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.+.|+|||||||+.+.|+... .+..+.+.++...+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~ 66 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADI 66 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEc
Confidence 457899999999999999999998654 23445666765444
No 296
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.02 E-value=0.0075 Score=58.34 Aligned_cols=41 Identities=24% Similarity=0.315 Sum_probs=31.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+.... +..|-+.++...+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~ 66 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTKLIQRFYV---PENGRVLVDGHDL 66 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCeeh
Confidence 5678999999999999999999986542 3345677766544
No 297
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.02 E-value=0.0075 Score=57.93 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=31.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+.... +..|.+.++...+
T Consensus 27 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~ 67 (229)
T cd03254 27 KPGETVAIVGPTGAGKTTLINLLMRFYD---PQKGQILIDGIDI 67 (229)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEeH
Confidence 5567999999999999999999986642 3456677776544
No 298
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.02 E-value=0.0081 Score=57.99 Aligned_cols=41 Identities=27% Similarity=0.415 Sum_probs=31.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+...++.|.|+|||||||+.+.|.... .+..|-+.++...+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~ 71 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASLI---SPTSGTLLFEGEDI 71 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc---CCCCCeEEECCEEc
Confidence 567899999999999999999998643 23455667766544
No 299
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=96.01 E-value=0.022 Score=53.54 Aligned_cols=34 Identities=6% Similarity=0.177 Sum_probs=26.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
+|.|+|..|||++|+++.|++.++ +.++|.+.+.
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg-------~~~~d~~ii~ 34 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLG-------YPYYDREIIE 34 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT---------EE-HHHHH
T ss_pred CEEECCCCCCChHHHHHHHHHHcC-------CccCCHHHHH
Confidence 688999999999999999999995 7899886663
No 300
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.01 E-value=0.0085 Score=55.89 Aligned_cols=41 Identities=22% Similarity=0.343 Sum_probs=31.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.+.... .+..+.+.++...+
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~ 63 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDL 63 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEEC
Confidence 457899999999999999999998654 23456677766544
No 301
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.99 E-value=0.0089 Score=56.59 Aligned_cols=41 Identities=29% Similarity=0.369 Sum_probs=32.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+... .+..|-++++...+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~ 65 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLL---NPEKGEILFERQSI 65 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCeeEEECCCcc
Confidence 457899999999999999999987654 24456677776555
No 302
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.99 E-value=0.005 Score=61.92 Aligned_cols=50 Identities=26% Similarity=0.294 Sum_probs=35.0
Q ss_pred ccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 162 VMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 162 v~~~~~~~~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
++..+.-+-....++.|.|||||||||+.+.++.-+ .|..+.+.+....+
T Consensus 19 vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll---~p~~G~i~~~g~~~ 68 (254)
T COG1121 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLL---KPSSGEIKIFGKPV 68 (254)
T ss_pred eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC---cCCcceEEEccccc
Confidence 344443333567899999999999999999998633 24456677765543
No 303
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.99 E-value=0.008 Score=56.72 Aligned_cols=40 Identities=23% Similarity=0.200 Sum_probs=30.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 213 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~ 213 (477)
....++.|.|+|||||||+.+.|+..+. +..|-+.++.-.
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~ 61 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLEK---FDSGQVYLNGKE 61 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEE
Confidence 4567999999999999999999986542 334556665544
No 304
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=95.99 E-value=0.0079 Score=58.15 Aligned_cols=41 Identities=24% Similarity=0.230 Sum_probs=31.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+.... +..|.+.++...+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~ 63 (232)
T PRK10771 23 ERGERVAILGPSGAGKSTLLNLIAGFLT---PASGSLTLNGQDH 63 (232)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCeec
Confidence 4578999999999999999999976542 3446677776554
No 305
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=95.99 E-value=0.008 Score=58.32 Aligned_cols=41 Identities=24% Similarity=0.338 Sum_probs=30.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|..... +..|.+.++...+
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~ 49 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGLAQ---PTSGGVILEGKQI 49 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEC
Confidence 4467999999999999999999986542 3445667765444
No 306
>PF13245 AAA_19: Part of AAA domain
Probab=95.98 E-value=0.011 Score=48.62 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=18.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+.+.+|.|||||||||++..+...+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4568889999999996665555543
No 307
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.98 E-value=0.0083 Score=56.05 Aligned_cols=41 Identities=12% Similarity=0.300 Sum_probs=31.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+...++.|.|+|||||||+.+.|+.... +..+-+.++...+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~ 64 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLRP---PASGEITLDGKPV 64 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEC
Confidence 4577999999999999999999987642 3455677776544
No 308
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.96 E-value=0.0082 Score=58.51 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=30.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+..+. +..|.+.++...+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~ 67 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLRCINLLEQ---PEAGTIRVGDITI 67 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEc
Confidence 5678999999999999999999986542 3345566665444
No 309
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.96 E-value=0.079 Score=59.94 Aligned_cols=54 Identities=22% Similarity=0.324 Sum_probs=40.4
Q ss_pred hhhchhhhhhhhhhHHHHHHHHHHHHHHHhcCCCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 011773 124 RKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW 199 (477)
Q Consensus 124 ~~~~~~~v~~~~~~~r~~~~l~ee~~~~~~~~~~~~~~v~~~~~~~~~~P~LIlLaGp~GSGKSTlAr~La~~l~~ 199 (477)
|=+.|+.|.....+.+.+...++. .+.|..++++|++|.||||+++.|++.+.+
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~----------------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQ----------------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHh----------------------CCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 457777777776666544444332 345788999999999999999999998853
No 310
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.96 E-value=0.0084 Score=58.63 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=32.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+.... +..|.+.++...+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~ 69 (255)
T PRK11300 29 REQEIVSLIGPNGAGKTTVFNCLTGFYK---PTGGTILLRGQHI 69 (255)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCcC---CCcceEEECCEEC
Confidence 5678999999999999999999986542 3456677776555
No 311
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.96 E-value=0.0087 Score=57.17 Aligned_cols=41 Identities=15% Similarity=0.311 Sum_probs=31.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+...++.|.|+|||||||+.+.|+... .+..+-+.++...+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~ 68 (221)
T cd03244 28 KPGEKVGIVGRTGSGKSSLLLALFRLV---ELSSGSILIDGVDI 68 (221)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEh
Confidence 557899999999999999999998653 23445667765444
No 312
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=95.96 E-value=0.0084 Score=58.23 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=31.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+.... +..|-+.++...+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~ 67 (241)
T PRK10895 27 NSGEIVGLLGPNGAGKTTTFYMVVGIVP---RDAGNIIIDDEDI 67 (241)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEC
Confidence 5678999999999999999999987542 3445677766554
No 313
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.96 E-value=0.0088 Score=55.44 Aligned_cols=41 Identities=22% Similarity=0.217 Sum_probs=30.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+.... +..+-+.++...+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~ 64 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDI 64 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEc
Confidence 4567999999999999999999976542 3445666765444
No 314
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.95 E-value=0.0087 Score=63.29 Aligned_cols=44 Identities=14% Similarity=0.302 Sum_probs=33.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCC-CCeEEEeCcccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAA-TNAVVVEADAFK 215 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~-~~~vvIdaD~Ik 215 (477)
..+.++++.||+|+||||++..|+..+-. ..+ ..+.+|..|.++
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~-~~G~~~V~lit~D~~R 179 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVM-RFGASKVALLTTDSYR 179 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHH-hcCCCeEEEEeccccc
Confidence 44679999999999999999999876411 112 357789999985
No 315
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.95 E-value=0.0095 Score=55.11 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=31.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.+.|+|||||||+.+.++.... +..+-+.++...+
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~ 66 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDL 66 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEh
Confidence 5578999999999999999999987643 3445667766544
No 316
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.94 E-value=0.0055 Score=58.80 Aligned_cols=23 Identities=35% Similarity=0.342 Sum_probs=20.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHH
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMK 195 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~ 195 (477)
..+++|+|||||||||+.+.+..
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHH
Confidence 37999999999999999999874
No 317
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.94 E-value=0.0086 Score=57.08 Aligned_cols=41 Identities=20% Similarity=0.135 Sum_probs=30.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+.-.. +..|-+.++.-.+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~ 69 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAGLLE---PDAGFATVDGFDV 69 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEEc
Confidence 4568999999999999999999986542 3345566654333
No 318
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.93 E-value=0.0089 Score=57.03 Aligned_cols=39 Identities=26% Similarity=0.279 Sum_probs=29.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 213 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~ 213 (477)
.. .++.|.|+|||||||+.+.|+..+. +..|-+.++.-.
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~ 60 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLEK---PDGGTIVLNGTV 60 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEe
Confidence 45 8999999999999999999986542 334556665433
No 319
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.93 E-value=0.0093 Score=57.26 Aligned_cols=41 Identities=20% Similarity=0.224 Sum_probs=31.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+...++.|.|+|||||||+.+.|+.... +..+-++++.-.+
T Consensus 38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~ 78 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENFYQ---PQGGQVLLDGKPI 78 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCcEEEECCCch
Confidence 5678999999999999999999986542 3445666655333
No 320
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.92 E-value=0.017 Score=62.22 Aligned_cols=39 Identities=31% Similarity=0.454 Sum_probs=30.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
.|.-|+|.||+|+||||+|+.|++.++ .++..+|+..|.
T Consensus 49 ~~~~ILliGp~G~GKT~LAr~LAk~l~-----~~fi~vD~t~f~ 87 (443)
T PRK05201 49 TPKNILMIGPTGVGKTEIARRLAKLAN-----APFIKVEATKFT 87 (443)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC-----Chheeecchhhc
Confidence 467789999999999999999999874 345566665554
No 321
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.92 E-value=0.02 Score=59.38 Aligned_cols=99 Identities=26% Similarity=0.270 Sum_probs=54.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHHHH
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLL 252 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~li 252 (477)
.-+++++||+||||||+.+.+..... .+..+.++.-.|.+ +. . .+.... -..+. +. .. ....+...+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~--~~~~~~i~tiEdp~-E~----~--~~~~~~-~i~q~-ev-g~-~~~~~~~~l 188 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYIN--KNAAGHIITIEDPI-EY----V--HRNKRS-LINQR-EV-GL-DTLSFANAL 188 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC--cCCCCEEEEEcCCh-hh----h--ccCccc-eEEcc-cc-CC-CCcCHHHHH
Confidence 46899999999999999999887652 12123334334433 11 0 000000 00000 00 00 001133467
Q ss_pred HHHHhCCCcEEEeCCCCCHHHHHHHHHHHhcc
Q 011773 253 VTALNEGRDVIMDGTLSWVPFVEQTIAMARNV 284 (477)
Q Consensus 253 ~~aL~~G~sVIiDgT~s~~~~re~lialar~~ 284 (477)
..++..+-++|+=+-...+.-....+..+...
T Consensus 189 ~~~lr~~pd~i~vgEird~~~~~~~l~aa~tG 220 (343)
T TIGR01420 189 RAALREDPDVILIGEMRDLETVELALTAAETG 220 (343)
T ss_pred HHhhccCCCEEEEeCCCCHHHHHHHHHHHHcC
Confidence 77888888888876677776666656655543
No 322
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.92 E-value=0.009 Score=57.80 Aligned_cols=41 Identities=17% Similarity=0.223 Sum_probs=31.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+.+.++.|.|+|||||||+.+.|+.... +..|-+.++...+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~ 67 (238)
T cd03249 27 PPGKTVALVGSSGCGKSTVVSLLERFYD---PTSGEILLDGVDI 67 (238)
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHhccCC---CCCCEEEECCEeh
Confidence 5678999999999999999999986542 3445666765443
No 323
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.91 E-value=0.011 Score=57.57 Aligned_cols=41 Identities=29% Similarity=0.434 Sum_probs=31.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.+.-+++++|||||||||+.+.|.... .|..+-+.++.-++
T Consensus 26 ~~Gef~fl~GpSGAGKSTllkLi~~~e---~pt~G~i~~~~~dl 66 (223)
T COG2884 26 PKGEFVFLTGPSGAGKSTLLKLIYGEE---RPTRGKILVNGHDL 66 (223)
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhhh---cCCCceEEECCeec
Confidence 557899999999999999999987764 34455566654444
No 324
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.91 E-value=0.017 Score=62.60 Aligned_cols=43 Identities=14% Similarity=0.356 Sum_probs=34.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
....++++.|+||+||||++.+++... ...+..+.+++.++-.
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~--~~~ge~~~y~s~eEs~ 303 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENA--CANKERAILFAYEESR 303 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEEeeCCH
Confidence 456899999999999999999988764 2345678999888763
No 325
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.91 E-value=0.0097 Score=63.31 Aligned_cols=44 Identities=18% Similarity=0.301 Sum_probs=35.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 216 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike 216 (477)
..+.+++++||+|+||||++..|+..+. ..+..+.+|++|.++.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~--~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLL--KQNRTVGFITTDTFRS 247 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEeCCccCc
Confidence 4578999999999999999999987542 2334578999999964
No 326
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.91 E-value=0.025 Score=56.72 Aligned_cols=27 Identities=33% Similarity=0.262 Sum_probs=23.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
.|.-+++.||+|+||||+++.++..++
T Consensus 29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~ 55 (305)
T TIGR00635 29 ALDHLLLYGPPGLGKTTLAHIIANEMG 55 (305)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 355678999999999999999999874
No 327
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.90 E-value=0.0089 Score=57.68 Aligned_cols=41 Identities=17% Similarity=0.364 Sum_probs=31.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+... .+..|.+.++...+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~---~~~~G~v~~~g~~~ 65 (236)
T cd03253 25 PAGKKVAIVGPSGSGKSTILRLLFRFY---DVSSGSILIDGQDI 65 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc---CCCCCEEEECCEEh
Confidence 567899999999999999999998654 23456677766544
No 328
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=95.90 E-value=0.0089 Score=58.02 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=31.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+..+. +..|-+.++...+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~ 65 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTLLRCINKLEE---ITSGDLIVDGLKV 65 (240)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEC
Confidence 4578999999999999999999986542 3345677766544
No 329
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.89 E-value=0.0096 Score=56.41 Aligned_cols=38 Identities=16% Similarity=0.148 Sum_probs=28.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 211 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIda 211 (477)
+...++.|.|+|||||||+.+.++... .+..+.+.++.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g 60 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDG 60 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECC
Confidence 456799999999999999999988654 23445566654
No 330
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.89 E-value=0.0064 Score=58.57 Aligned_cols=27 Identities=15% Similarity=0.082 Sum_probs=23.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
....++.|.|+|||||||+.+.++.-.
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 456899999999999999999998653
No 331
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.87 E-value=0.0095 Score=57.88 Aligned_cols=41 Identities=22% Similarity=0.299 Sum_probs=31.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+... .+..|-+.++...+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~ 66 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLLE---MPRSGTLNIAGNHF 66 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEec
Confidence 457899999999999999999998654 23445677765543
No 332
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=95.86 E-value=0.0092 Score=58.41 Aligned_cols=41 Identities=24% Similarity=0.336 Sum_probs=31.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+..+ .+..+.+.++...+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~i 64 (252)
T TIGR03005 24 AAGEKVALIGPSGSGKSTILRILMTLE---PIDEGQIQVEGEQL 64 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEc
Confidence 567899999999999999999998654 23445666765444
No 333
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=95.86 E-value=0.0085 Score=59.36 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=31.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+.... +..|-+.++...+
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~ 75 (265)
T PRK10575 35 PAGKVTGLIGHNGSGKSTLLKMLGRHQP---PSEGEILLDAQPL 75 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEeh
Confidence 5578999999999999999999986542 3446677776544
No 334
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=95.86 E-value=0.0057 Score=59.26 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=21.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHH
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMK 195 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~ 195 (477)
|.+.+|.|||||||||+.++|.-
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~~ 45 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIRF 45 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 77999999999999999999873
No 335
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.86 E-value=0.0098 Score=54.84 Aligned_cols=41 Identities=24% Similarity=0.308 Sum_probs=31.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+...++.|.|+|||||||+.+.|+... .+..+-+.++...+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~ 64 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEV 64 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEC
Confidence 557899999999999999999998654 24455677766554
No 336
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=95.86 E-value=0.01 Score=58.41 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=31.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 213 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~ 213 (477)
....++.|.|+|||||||+++.|+..+ .+..|-+.++...
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~ 69 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSARL---APDAGEVHYRMRD 69 (258)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCCEEEECCcc
Confidence 567899999999999999999998754 2345667776654
No 337
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=95.85 E-value=0.0096 Score=57.60 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=31.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCC----CCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA----ATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~----~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+.... + ..|-+.++...+
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~G~i~~~g~~~ 54 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCLAILGLLP---PGLTQTSGEILLDGRPL 54 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC---CccCccccEEEECCEec
Confidence 4578999999999999999999986542 2 245566766554
No 338
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.85 E-value=0.0088 Score=58.11 Aligned_cols=46 Identities=22% Similarity=0.310 Sum_probs=36.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchH
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDV 219 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~ 219 (477)
....++.|.||+||||||+...++- +..|..+.+.||..+.....|
T Consensus 23 ~~ge~vAi~GpSGaGKSTLLnLIAG---F~~P~~G~i~i~g~d~t~~~P 68 (231)
T COG3840 23 PAGEIVAILGPSGAGKSTLLNLIAG---FETPASGEILINGVDHTASPP 68 (231)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHh---ccCCCCceEEEcCeecCcCCc
Confidence 3467899999999999999999874 356788889999888754433
No 339
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.85 E-value=0.0099 Score=58.79 Aligned_cols=40 Identities=25% Similarity=0.307 Sum_probs=30.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 213 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~ 213 (477)
....++.|.|+|||||||+.+.|+... .+..|.+.++.-.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~ 64 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIAGFV---PYQHGSITLDGKP 64 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEE
Confidence 557899999999999999999998654 2334556665433
No 340
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.84 E-value=0.016 Score=58.07 Aligned_cols=94 Identities=21% Similarity=0.293 Sum_probs=56.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEE-eCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHHHH
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLL 252 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvI-daD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~li 252 (477)
-+++++|++||||||+.+.+..... .+..+.+.| |+.++. +... . .. .. ..+....+...+
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~--~~~~~iitiEdp~E~~--------~~~~--~-q~-~v----~~~~~~~~~~~l 142 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELN--TPEKNIITVEDPVEYQ--------IPGI--N-QV-QV----NEKAGLTFARGL 142 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhC--CCCCeEEEECCCceec--------CCCc--e-EE-Ee----CCcCCcCHHHHH
Confidence 4899999999999999999887752 112223333 222221 1110 0 00 00 001111234577
Q ss_pred HHHHhCCCcEEEeCCCCCHHHHHHHHHHHhccc
Q 011773 253 VTALNEGRDVIMDGTLSWVPFVEQTIAMARNVH 285 (477)
Q Consensus 253 ~~aL~~G~sVIiDgT~s~~~~re~lialar~~h 285 (477)
..+++.+-++|+=+-..+++....+++.+...|
T Consensus 143 ~~~lR~~PD~i~vgEiR~~e~a~~~~~aa~tGh 175 (264)
T cd01129 143 RAILRQDPDIIMVGEIRDAETAEIAVQAALTGH 175 (264)
T ss_pred HHHhccCCCEEEeccCCCHHHHHHHHHHHHcCC
Confidence 888999999999988888877666666665544
No 341
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.84 E-value=0.01 Score=59.09 Aligned_cols=41 Identities=12% Similarity=0.220 Sum_probs=32.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 213 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~ 213 (477)
....+++|+|+||+||||++.+++... ...+..+.+|+.+.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~--a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQ--ASRGNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHH--HhCCCcEEEEEecC
Confidence 357899999999999999999987652 23356788898764
No 342
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.84 E-value=0.01 Score=56.66 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=31.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|.... .+..+.+.++...+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~G~~---~~~~G~i~~~g~~~ 68 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGLY---KPTSGSVLLDGTDI 68 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc---CCCCCeEEECCEEh
Confidence 567899999999999999999998653 23345666665444
No 343
>PRK10908 cell division protein FtsE; Provisional
Probab=95.84 E-value=0.0099 Score=57.03 Aligned_cols=41 Identities=27% Similarity=0.344 Sum_probs=31.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+... .+..+.+.++...+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~i 66 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGIE---RPSAGKIWFSGHDI 66 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEc
Confidence 567899999999999999999998654 23445666765444
No 344
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=95.83 E-value=0.011 Score=52.24 Aligned_cols=36 Identities=19% Similarity=0.351 Sum_probs=29.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcc
Q 011773 176 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 213 (477)
Q Consensus 176 IlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~ 213 (477)
|++.|.+|+||||++..++..+ .+.+....+||+|.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l--~~~g~~V~~id~D~ 37 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYL--AEKGKPVLAIDADP 37 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHH--HHCCCcEEEEECCc
Confidence 7899999999999999998765 23445678899986
No 345
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.83 E-value=0.013 Score=56.28 Aligned_cols=49 Identities=24% Similarity=0.369 Sum_probs=33.6
Q ss_pred cccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 163 MVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 163 ~~~~~~~~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
..++...-...-.+.|+||+||||||+.+.++.-. .+..|.+......+
T Consensus 19 l~~isl~v~~Ge~iaitGPSG~GKStllk~va~Li---sp~~G~l~f~Ge~v 67 (223)
T COG4619 19 LNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLI---SPTSGTLLFEGEDV 67 (223)
T ss_pred ecceeeeecCCceEEEeCCCCccHHHHHHHHHhcc---CCCCceEEEcCccc
Confidence 34443334567899999999999999999998653 23444555554444
No 346
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.82 E-value=0.011 Score=56.39 Aligned_cols=41 Identities=22% Similarity=0.303 Sum_probs=31.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.+..... +..|.+.++...+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~ 66 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGLLP---PAAGTIKLDGGDI 66 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEeC
Confidence 5678999999999999999999987542 3445667765443
No 347
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=95.82 E-value=0.011 Score=57.00 Aligned_cols=40 Identities=33% Similarity=0.302 Sum_probs=30.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
...++.|.|+|||||||+.+.|+.... +..|-+.+|...+
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~ 44 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLIP---PAKGTVKVAGASP 44 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCccc
Confidence 467999999999999999999987542 3345667766544
No 348
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.81 E-value=0.011 Score=56.00 Aligned_cols=37 Identities=27% Similarity=0.377 Sum_probs=28.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 210 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvId 210 (477)
+...++.|.|+|||||||+.+.++.... +..+.+.++
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~~---~~~G~i~~~ 65 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVP 65 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCCeEEEc
Confidence 5678999999999999999999976542 344545554
No 349
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.80 E-value=0.0096 Score=59.16 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=31.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i 65 (271)
T PRK13638 25 SLSPVTGLVGANGCGKSTLFMNLSGLL---RPQKGAVLWQGKPL 65 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC---CCCccEEEECCEEc
Confidence 457899999999999999999997654 23456677766554
No 350
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.80 E-value=0.16 Score=55.40 Aligned_cols=212 Identities=20% Similarity=0.220 Sum_probs=109.4
Q ss_pred CCccccccchhhhHHhhhCCCCCCchhHHHHHHHHHHhhCCchhhhHHHHhhc--------CCCchhHHHHHHHHHhhhh
Q 011773 15 SGRVGNLERFSHYVARQMGFDDTNECPQLCKLAYEYLKKSKGCEDNIYEYFSK--------EAEPESLYVKLVEEFDRCI 86 (477)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 86 (477)
+++.+.++.|+-+.---.|-.|.+.=| ..+++..-.-+.+|.+ +.|-.++..|+-|-|=.=-
T Consensus 244 ~s~~~~~~~l~~~~~d~~~s~~~~~~~----------~~~~k~~g~aFg~fkglvG~K~L~eeDL~pvL~kM~ehLitKN 313 (587)
T KOG0781|consen 244 ESMGGQLQDLDKDSSDDEGSADNSTDP----------AATKKTVGGAFGLFKGLVGSKSLSEEDLNPVLDKMTEHLITKN 313 (587)
T ss_pred cccccccccccccccccccccccccch----------hhhhcchhhHHHHHHhhcccccccHhhhHHHHHHHHHHHHhhh
Confidence 456778888888877777777777767 3345555667777776 6777788888776332211
Q ss_pred hhhhcccccchhhHHHhhhcccchhhhchhhh------HHHHhhhhchhhhhhhhhhHHHHHHHHHHHHHHHhcCCCccc
Q 011773 87 LSYFTFHWSHASLMISQVLSVESEKKTKLKDF------IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCT 160 (477)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~v~~~~~~~r~~~~l~ee~~~~~~~~~~~~~ 160 (477)
+++ .-|.+|-.+|-+.= + -+++.++ |-+|-|+-= ++=|-..|-.- |+.++-++
T Consensus 314 VA~-----eiA~~LcEsV~a~L-e-gkkv~sfs~V~~Tvk~Al~daL----vQILTP~~sVD-lLRdI~sa--------- 372 (587)
T KOG0781|consen 314 VAA-----EIAEKLCESVAASL-E-GKKVGSFSTVESTVKEALRDAL----VQILTPQRSVD-LLRDIMSA--------- 372 (587)
T ss_pred hhH-----HHHHHHHHHHHHHh-h-hcccccchHHHHHHHHHHHHHH----HHHcCCCchhh-HHHHHHHH---------
Confidence 111 11222333332211 1 1222222 222222211 11111111111 11111111
Q ss_pred cccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHH-----HHHHhcCCCCCchhh
Q 011773 161 DVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVI-----YRALSSKGHHDDMLQ 235 (477)
Q Consensus 161 ~v~~~~~~~~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~i-----rk~Ls~~g~p~d~~~ 235 (477)
...++|.+|.++|-||.||||-...|+--+ .+++..+.+.-.|.||.--+. -+.|+.. ++.....
T Consensus 373 -------r~~krPYVi~fvGVNGVGKSTNLAKIayWL--lqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l-~~~~v~l 442 (587)
T KOG0781|consen 373 -------RRRKRPYVISFVGVNGVGKSTNLAKIAYWL--LQNKFRVLIAACDTFRSGAVEQLRTHVERLSAL-HGTMVEL 442 (587)
T ss_pred -------HhcCCCeEEEEEeecCccccchHHHHHHHH--HhCCceEEEEeccchhhhHHHHHHHHHHHHHHh-ccchhHH
Confidence 235689999999999999999655554322 233345667778999742111 1112221 1111000
Q ss_pred HHHHHhHhHHHHHHHHHHHHHhCCCcEEEeCC
Q 011773 236 TAELVHQSSTDAASSLLVTALNEGRDVIMDGT 267 (477)
Q Consensus 236 ~ae~v~~~a~~la~~li~~aL~~G~sVIiDgT 267 (477)
...-....+...+...++++-++|.+||+=.|
T Consensus 443 fekGYgkd~a~vak~AI~~a~~~gfDVvLiDT 474 (587)
T KOG0781|consen 443 FEKGYGKDAAGVAKEAIQEARNQGFDVVLIDT 474 (587)
T ss_pred HhhhcCCChHHHHHHHHHHHHhcCCCEEEEec
Confidence 11111123446778899999999999987544
No 351
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=95.79 E-value=0.011 Score=56.56 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=29.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 210 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvId 210 (477)
....++.|.|+|||||||+.+.|..-+. +..|-+.++
T Consensus 32 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~ 68 (224)
T TIGR02324 32 NAGECVALSGPSGAGKSTLLKSLYANYL---PDSGRILVR 68 (224)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEEe
Confidence 5678999999999999999999986542 334566776
No 352
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.78 E-value=0.012 Score=57.17 Aligned_cols=41 Identities=22% Similarity=0.292 Sum_probs=31.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+..+. +..|-+.++...+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~ 66 (242)
T TIGR03411 26 DPGELRVIIGPNGAGKTTMMDVITGKTR---PDEGSVLFGGTDL 66 (242)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCeec
Confidence 5578999999999999999999986542 3445677765444
No 353
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.78 E-value=0.0088 Score=54.86 Aligned_cols=36 Identities=25% Similarity=0.395 Sum_probs=28.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcc
Q 011773 176 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 213 (477)
Q Consensus 176 IlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~ 213 (477)
+.+.|++||||||++..+...+ ...+....+++.|.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~--~~~g~~v~ii~~D~ 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITAL--RARGKRVAVLAIDP 37 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHH--HHCCCEEEEEEeCC
Confidence 6788999999999999998765 23445677888884
No 354
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.78 E-value=0.011 Score=53.68 Aligned_cols=38 Identities=32% Similarity=0.214 Sum_probs=28.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 211 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIda 211 (477)
....++.+.|+|||||||+.+.+..... +..+-+.++.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~ 61 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGS 61 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECC
Confidence 5568999999999999999999976542 3344555543
No 355
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.76 E-value=0.046 Score=56.81 Aligned_cols=89 Identities=26% Similarity=0.302 Sum_probs=47.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCch-hhHHHHHhHhHHHHHHH
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDM-LQTAELVHQSSTDAASS 250 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~-~~~ae~v~~~a~~la~~ 250 (477)
....|+++|++||||||+.+.|..... +....+.|+ |.. +.. +. .+|+.. ..............+..
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip---~~~ri~tiE-d~~-El~-----l~--~~~n~~~~~~~~~~~~~~~~~~~~ 226 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIP---AIERLITVE-DAR-EIV-----LS--NHPNRVHLLASKGGQGRAKVTTQD 226 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCC---CCCeEEEec-CCC-ccc-----cc--cCCCEEEEEecCCCCCcCcCcHHH
Confidence 356799999999999999999998763 112233331 222 210 10 112100 00000000001112345
Q ss_pred HHHHHHhCCCcEEEeCCCCCHH
Q 011773 251 LLVTALNEGRDVIMDGTLSWVP 272 (477)
Q Consensus 251 li~~aL~~G~sVIiDgT~s~~~ 272 (477)
++..+++..-+.|+=|-+...+
T Consensus 227 ll~~~LR~~PD~IivGEiR~~e 248 (332)
T PRK13900 227 LIEACLRLRPDRIIVGELRGAE 248 (332)
T ss_pred HHHHHhccCCCeEEEEecCCHH
Confidence 7788888888888877776654
No 356
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=95.75 E-value=0.0077 Score=58.28 Aligned_cols=43 Identities=19% Similarity=0.280 Sum_probs=31.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+...++.|.|+|||||||+.+.|+..+. ..+..|.+.++...+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~~~G~i~~~g~~~ 66 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGHPS-YEVTSGTILFKGQDL 66 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCcceEEECCEec
Confidence 5578999999999999999999986520 013346677776544
No 357
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.75 E-value=0.0076 Score=58.96 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=30.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccc-c-CCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFW-S-GAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~-~-~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+.-... . .+..|.+.++.-.+
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 75 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENI 75 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEc
Confidence 45789999999999999999999854210 0 01235566665443
No 358
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=95.75 E-value=0.0085 Score=57.71 Aligned_cols=44 Identities=20% Similarity=0.315 Sum_probs=31.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|...+.-.++..+-++++...+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 56789999999999999999999865420002345566665444
No 359
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.73 E-value=0.0078 Score=57.87 Aligned_cols=42 Identities=17% Similarity=0.258 Sum_probs=30.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCC-CCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA-ATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~-~~~~vvIdaD~I 214 (477)
+.+.++++.|+||||||+++.+++.+. ... +..+.+|+.++=
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~--~~~~ge~vlyvs~ee~ 59 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNG--LKNFGEKVLYVSFEEP 59 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH--HHHHT--EEEEESSS-
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHh--hhhcCCcEEEEEecCC
Confidence 357899999999999999999977543 123 467889988765
No 360
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.72 E-value=0.013 Score=56.73 Aligned_cols=42 Identities=21% Similarity=0.375 Sum_probs=32.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+.+.++++.|+|||||||++.+++... ...+..+.+++.+.-
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~--~~~g~~~~y~~~e~~ 64 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA--LKQGKKVYVITTENT 64 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH--HhCCCEEEEEEcCCC
Confidence 457899999999999999999986542 123567888988754
No 361
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.72 E-value=0.0085 Score=56.99 Aligned_cols=24 Identities=46% Similarity=0.429 Sum_probs=21.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMK 195 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~ 195 (477)
.+.+++++|||||||||+.+.++.
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHHH
Confidence 357999999999999999999983
No 362
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=95.72 E-value=0.011 Score=58.70 Aligned_cols=41 Identities=17% Similarity=0.256 Sum_probs=31.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+.... +..+-+.++...+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i 71 (269)
T PRK11831 31 PRGKITAIMGPSGIGKTTLLRLIGGQIA---PDHGEILFDGENI 71 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEc
Confidence 5578999999999999999999986542 3345666765444
No 363
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.72 E-value=0.011 Score=58.71 Aligned_cols=41 Identities=24% Similarity=0.382 Sum_probs=31.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+..+. +..|-+.++...+
T Consensus 48 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~---p~~G~i~i~g~~~ 88 (269)
T cd03294 48 REGEIFVIMGLSGSGKSTLLRCINRLIE---PTSGKVLIDGQDI 88 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEc
Confidence 5678999999999999999999986542 3445667765444
No 364
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.71 E-value=0.014 Score=57.18 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=30.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
...++++.|+|||||||++.+++... ..++....+|+.++-
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~--~~~g~~~~yi~~e~~ 63 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF--LQNGYSVSYVSTQLT 63 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEEeCCCC
Confidence 35699999999999999987765543 123456788887764
No 365
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.71 E-value=0.0084 Score=56.59 Aligned_cols=43 Identities=23% Similarity=0.416 Sum_probs=30.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+.... ..+..+-+.++...+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~~~G~i~~~g~~~ 73 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAGRKT-AGVITGEILINGRPL 73 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCc-CCCcceEEEECCEeh
Confidence 5578999999999999999999985321 012345566665443
No 366
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.70 E-value=0.012 Score=58.26 Aligned_cols=41 Identities=27% Similarity=0.386 Sum_probs=32.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+... .+..|-+.++...+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~---~p~~G~i~~~g~~~ 66 (258)
T PRK13548 26 RPGEVVAILGPNGAGKSTLLRALSGEL---SPDSGEVRLNGRPL 66 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCCEEEECCEEc
Confidence 567899999999999999999998654 23456677766544
No 367
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.70 E-value=0.041 Score=58.55 Aligned_cols=94 Identities=19% Similarity=0.185 Sum_probs=60.7
Q ss_pred ccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhc----CCCCCchhhHHHHHhHh
Q 011773 168 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSS----KGHHDDMLQTAELVHQS 243 (477)
Q Consensus 168 ~~~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~----~g~p~d~~~~ae~v~~~ 243 (477)
+...+|.+|++.|..||||||.+..++-.+- ..+-.+..|-+|.||..- +.+|.. .+.|- +...+...
T Consensus 96 ~~K~kpsVimfVGLqG~GKTTtc~KlA~y~k--kkG~K~~LvcaDTFRagA--fDQLkqnA~k~~iP~----ygsyte~d 167 (483)
T KOG0780|consen 96 PKKGKPSVIMFVGLQGSGKTTTCTKLAYYYK--KKGYKVALVCADTFRAGA--FDQLKQNATKARVPF----YGSYTEAD 167 (483)
T ss_pred cccCCCcEEEEEeccCCCcceeHHHHHHHHH--hcCCceeEEeecccccch--HHHHHHHhHhhCCee----Eecccccc
Confidence 3357899999999999999999888776542 223357889999997421 222211 12221 11222233
Q ss_pred HHHHHHHHHHHHHhCCCcEEE-eCCCC
Q 011773 244 STDAASSLLVTALNEGRDVIM-DGTLS 269 (477)
Q Consensus 244 a~~la~~li~~aL~~G~sVIi-DgT~s 269 (477)
...++..-+++.-+++.++|+ ||.=.
T Consensus 168 pv~ia~egv~~fKke~fdvIIvDTSGR 194 (483)
T KOG0780|consen 168 PVKIASEGVDRFKKENFDVIIVDTSGR 194 (483)
T ss_pred hHHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 456777788899999999765 65433
No 368
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.70 E-value=0.033 Score=57.09 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=32.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.+...++-|.|+|||||||+...+...+. ...+..+|..|.-
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~---~~~~~~VI~gD~~ 142 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMRLK---DSVPCAVIEGDQQ 142 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHHhc---cCCCEEEECCCcC
Confidence 34578999999999999999999988752 1235778877754
No 369
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.69 E-value=0.014 Score=55.88 Aligned_cols=41 Identities=24% Similarity=0.270 Sum_probs=31.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+.... +..+.+.++...+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~ 65 (218)
T cd03290 25 PTGQLTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSNKNE 65 (218)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCccc
Confidence 5678999999999999999999986542 3455667765443
No 370
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.69 E-value=0.0089 Score=55.29 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=28.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 210 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvId 210 (477)
....++.+.|+|||||||+.+.++.... +..+.+.++
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~ 61 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWP---WGSGRIGMP 61 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEEC
Confidence 5578999999999999999999987642 233444454
No 371
>COG4240 Predicted kinase [General function prediction only]
Probab=95.69 E-value=0.011 Score=59.10 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=33.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
..+|.++.++||-||||||++..|...+- ...+.....++-|++
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~-~kg~ert~~lSLDDl 90 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLA-AKGLERTATLSLDDL 90 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHH-HhcccceEEeehhhh
Confidence 56799999999999999999988765542 111135678899988
No 372
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.69 E-value=0.015 Score=58.31 Aligned_cols=41 Identities=17% Similarity=0.299 Sum_probs=33.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.....+.|.|++||||||+++.++. |..|..|.+.++...+
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~G---l~~p~~G~I~~~G~~~ 71 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAG---LEKPSSGSILLDGKPL 71 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhc---ccCCCCceEEECCccc
Confidence 5577999999999999999999974 4456677888887655
No 373
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.69 E-value=0.012 Score=57.07 Aligned_cols=38 Identities=26% Similarity=0.232 Sum_probs=29.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 211 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIda 211 (477)
....++.|.|+|||||||+.+.++... .+..+-+.++.
T Consensus 46 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~p~~G~i~~~g 83 (224)
T cd03220 46 PRGERIGLIGRNGAGKSTLLRLLAGIY---PPDSGTVTVRG 83 (224)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECC
Confidence 557899999999999999999998653 23345555554
No 374
>COG3911 Predicted ATPase [General function prediction only]
Probab=95.68 E-value=0.013 Score=55.12 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=23.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+-++++++|+||+||||+..+|+..-
T Consensus 8 R~~~fIltGgpGaGKTtLL~aLa~~G 33 (183)
T COG3911 8 RHKRFILTGGPGAGKTTLLAALARAG 33 (183)
T ss_pred cceEEEEeCCCCCcHHHHHHHHHHcC
Confidence 34799999999999999999999874
No 375
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=95.68 E-value=0.012 Score=59.69 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=31.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.+.|||||||||+.+.|+.-+ .|..|-+.++...+
T Consensus 17 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~---~p~~G~i~~~g~~~ 57 (302)
T TIGR01188 17 REGEVFGFLGPNGAGKTTTIRMLTTLL---RPTSGTARVAGYDV 57 (302)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEc
Confidence 557899999999999999999998654 23456677766554
No 376
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=95.68 E-value=0.0071 Score=65.24 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
..=|+++|+|||||||||++|++-+
T Consensus 263 aeGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 263 AEGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred hcceEEecCCCCChhHHHHHHHHHH
Confidence 4568999999999999999999865
No 377
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.68 E-value=0.012 Score=56.99 Aligned_cols=41 Identities=22% Similarity=0.401 Sum_probs=31.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+.-. .+..|-+.++.-.+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~p~~G~i~~~g~~~ 69 (237)
T PRK11614 29 NQGEIVTLIGANGAGKTTLLGTLCGDP---RATSGRIVFDGKDI 69 (237)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCC---CCCCceEEECCEec
Confidence 557899999999999999999997653 23445666765444
No 378
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=95.68 E-value=0.013 Score=57.40 Aligned_cols=39 Identities=21% Similarity=0.146 Sum_probs=30.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 212 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD 212 (477)
....++.|.|+|||||||+.+.|+.... +..|-+.++..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~ 65 (253)
T TIGR02323 27 YPGEVLGIVGESGSGKSTLLGCLAGRLA---PDHGTATYIMR 65 (253)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEEecc
Confidence 5678999999999999999999987542 34456666543
No 379
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.68 E-value=0.0087 Score=58.44 Aligned_cols=44 Identities=18% Similarity=0.236 Sum_probs=30.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhcccc--CCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS--GAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~--~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+...... .+..|-+.++...+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i 72 (250)
T PRK14247 27 PDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDI 72 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEEC
Confidence 457899999999999999999998653100 01235566665444
No 380
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.67 E-value=0.013 Score=56.81 Aligned_cols=41 Identities=17% Similarity=0.324 Sum_probs=31.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+.... +..|.+.++...+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~g~~~---~~~G~i~~~g~~~ 64 (232)
T cd03300 24 KEGEFFTLLGPSGCGKTTLLRLIAGFET---PTSGEILLDGKDI 64 (232)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEc
Confidence 4578999999999999999999987653 3445677766544
No 381
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.67 E-value=0.011 Score=58.84 Aligned_cols=41 Identities=20% Similarity=0.211 Sum_probs=31.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+...++.|.|+|||||||+.+.|+..+ .+..|-+.++...+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~---~p~~G~i~~~g~~i 71 (280)
T PRK13649 31 EDGSYTAFIGHTGSGKSTIMQLLNGLH---VPTQGSVRVDDTLI 71 (280)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEc
Confidence 457799999999999999999998654 23445677765444
No 382
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.67 E-value=0.015 Score=56.95 Aligned_cols=42 Identities=19% Similarity=0.362 Sum_probs=32.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....+++|.|+|||||||++.+++...- ..+..+.+|+.++-
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~--~~ge~~lyvs~ee~ 60 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGL--QMGEPGIYVALEEH 60 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEEEeeCC
Confidence 3578999999999999999998765421 23566889987764
No 383
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.67 E-value=0.013 Score=58.28 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=31.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+..+. +..|.+.++.-.+
T Consensus 33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~ 73 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTIAKLMIGIEK---VKSGEIFYNNQAI 73 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEC
Confidence 4578999999999999999999986542 3456677766444
No 384
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.67 E-value=0.013 Score=58.35 Aligned_cols=41 Identities=17% Similarity=0.196 Sum_probs=31.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+... .+..|-+.++...+
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~I~~~g~~i 73 (271)
T PRK13632 33 NEGEYVAILGHNGSGKSTISKILTGLL---KPQSGEIKIDGITI 73 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEECCEec
Confidence 557899999999999999999998654 24456677765554
No 385
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=95.66 E-value=0.013 Score=58.17 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=31.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+...++.|.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 37 ~~Ge~~~i~G~NGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~ 77 (267)
T PRK15112 37 REGQTLAIIGENGSGKSTLAKMLAGMI---EPTSGELLIDDHPL 77 (267)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCC---CCCCCEEEECCEEC
Confidence 567899999999999999999998654 24456666765444
No 386
>PTZ00202 tuzin; Provisional
Probab=95.65 E-value=0.055 Score=58.90 Aligned_cols=97 Identities=20% Similarity=0.240 Sum_probs=53.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHHH
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL 251 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~l 251 (477)
.|.+++|+|++|+||||+++.+...++ .-..++|+-.. .+.++.-+...|.++... .....+.+...
T Consensus 285 ~privvLtG~~G~GKTTLlR~~~~~l~-----~~qL~vNprg~--eElLr~LL~ALGV~p~~~------k~dLLrqIqea 351 (550)
T PTZ00202 285 HPRIVVFTGFRGCGKSSLCRSAVRKEG-----MPAVFVDVRGT--EDTLRSVVKALGVPNVEA------CGDLLDFISEA 351 (550)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhcCC-----ceEEEECCCCH--HHHHHHHHHHcCCCCccc------HHHHHHHHHHH
Confidence 467999999999999999999987763 23566776632 223333233334332111 11122223333
Q ss_pred HHHHHhC-CCcEEE-----eCCCCCHHHHHHHHHHHh
Q 011773 252 LVTALNE-GRDVIM-----DGTLSWVPFVEQTIAMAR 282 (477)
Q Consensus 252 i~~aL~~-G~sVIi-----DgT~s~~~~re~lialar 282 (477)
+..+... |+.+|+ ||.-..+-|.+ .++++-
T Consensus 352 Ll~~~~e~GrtPVLII~lreg~~l~rvyne-~v~la~ 387 (550)
T PTZ00202 352 CRRAKKMNGETPLLVLKLREGSSLQRVYNE-VVALAC 387 (550)
T ss_pred HHHHHHhCCCCEEEEEEecCCCcHHHHHHH-HHHHHc
Confidence 3333334 887655 56555555544 344444
No 387
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=95.65 E-value=0.012 Score=58.62 Aligned_cols=41 Identities=22% Similarity=0.240 Sum_probs=30.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+.... +..|-+.++...+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i 71 (272)
T PRK15056 31 PGGSIAALVGVNGSGKSTLFKALMGFVR---LASGKISILGQPT 71 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEh
Confidence 4578999999999999999999986542 3345566665443
No 388
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=95.64 E-value=0.013 Score=57.22 Aligned_cols=41 Identities=20% Similarity=0.288 Sum_probs=30.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCC-----CCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAA-----TNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~-----~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+.... |. .|-+.++...+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~~~~~~G~i~~~g~~~ 70 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNRMND---LVPGVRIEGKVLFDGQDI 70 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceEEEECCEEc
Confidence 5678999999999999999999986542 22 45666766554
No 389
>PRK10646 ADP-binding protein; Provisional
Probab=95.64 E-value=0.014 Score=54.50 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=25.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFW 199 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~ 199 (477)
+.+.+|++.|.-||||||+++.+++.+++
T Consensus 26 ~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 26 DGATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 33568999999999999999999999874
No 390
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.64 E-value=0.0086 Score=56.26 Aligned_cols=22 Identities=36% Similarity=0.714 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 011773 176 LLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 176 IlLaGp~GSGKSTlAr~La~~l 197 (477)
|+|+|+||+||||+.+.+.+.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999988876
No 391
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.64 E-value=0.016 Score=55.73 Aligned_cols=42 Identities=12% Similarity=0.165 Sum_probs=31.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++++.|+||+||||++..++.+. ..++..+.+++.+.-
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~--~~~g~~~~~is~e~~ 59 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKG--LRDGDPVIYVTTEES 59 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHH--HhcCCeEEEEEccCC
Confidence 347899999999999999999876542 123456788887654
No 392
>PF13479 AAA_24: AAA domain
Probab=95.63 E-value=0.012 Score=56.84 Aligned_cols=34 Identities=21% Similarity=0.494 Sum_probs=27.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
++|.-++|.|+||+||||++..+ . +..+||.|.=
T Consensus 1 ~~~~~~lIyG~~G~GKTt~a~~~-~---------k~l~id~E~g 34 (213)
T PF13479_consen 1 KKPIKILIYGPPGSGKTTLAASL-P---------KPLFIDTENG 34 (213)
T ss_pred CCceEEEEECCCCCCHHHHHHhC-C---------CeEEEEeCCC
Confidence 35789999999999999999987 1 4678887753
No 393
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.63 E-value=0.014 Score=56.01 Aligned_cols=41 Identities=22% Similarity=0.333 Sum_probs=31.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.+.... .+..|-+.++...+
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~---~~~~G~i~~~g~~i 75 (214)
T PRK13543 35 DAGEALLVQGDNGAGKTTLLRVLAGLL---HVESGQIQIDGKTA 75 (214)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC---CCCCeeEEECCEEc
Confidence 457799999999999999999998654 23445566665444
No 394
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.63 E-value=0.012 Score=58.48 Aligned_cols=40 Identities=18% Similarity=0.255 Sum_probs=29.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 213 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~ 213 (477)
....++.|.|+|||||||+.+.|+.... +..|-+.++...
T Consensus 36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~ 75 (257)
T PRK11247 36 PAGQFVAVVGRSGCGKSTLLRLLAGLET---PSAGELLAGTAP 75 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEE
Confidence 4578999999999999999999986542 334555665443
No 395
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.63 E-value=0.0094 Score=56.68 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 011773 174 VLLLMGGGMGAGKSTVLKDIM 194 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La 194 (477)
.+++++|||||||||+.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 699999999999999999987
No 396
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=95.62 E-value=0.036 Score=55.20 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=30.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
++.-+++.|+|||||+|++..+.+.++ +.+|.+-++
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~-------~~hl~tGdl 49 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFG-------VIHISTGDL 49 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcC-------CccchhHHH
Confidence 578899999999999999999999974 566766555
No 397
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=95.62 E-value=0.013 Score=57.61 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=31.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+++.++.... +..|-+.++...+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~ 69 (257)
T PRK10619 29 NAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGSIVVNGQTI 69 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEc
Confidence 5678999999999999999999987642 3445667766544
No 398
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.62 E-value=0.019 Score=55.23 Aligned_cols=43 Identities=16% Similarity=0.306 Sum_probs=31.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhcc----ccCCCCCeEEEeCcc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESF----WSGAATNAVVVEADA 213 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~----~~~~~~~~vvIdaD~ 213 (477)
+...++.|.|+|||||||++..++...- |.+...++++|+.+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 4568999999999999999999975421 011125678888765
No 399
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.61 E-value=0.013 Score=62.74 Aligned_cols=43 Identities=16% Similarity=0.273 Sum_probs=32.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
+.++++.||+|+||||++..|+..+-....+..+.+|++|.++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r 263 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR 263 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH
Confidence 4688999999999999999887654100223468899999975
No 400
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.60 E-value=0.017 Score=55.75 Aligned_cols=43 Identities=9% Similarity=0.140 Sum_probs=32.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....+++|+|+||+||||++..++...- ...+..+.+++.+.=
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~-~~~g~~vly~s~E~~ 53 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIA-KKQGKPVLFFSLEMS 53 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHH-HhCCCceEEEeCCCC
Confidence 3467999999999999999999876641 111457888987764
No 401
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=95.58 E-value=0.0096 Score=58.75 Aligned_cols=44 Identities=18% Similarity=0.265 Sum_probs=30.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccc--cCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFW--SGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~--~~~~~~~vvIdaD~I 214 (477)
+...++.|.|+|||||||+.+.|+..... ..+..|-+.++...+
T Consensus 37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~ 82 (260)
T PRK10744 37 AKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENI 82 (260)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEc
Confidence 45789999999999999999999865310 001235566665443
No 402
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.57 E-value=0.0098 Score=58.08 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=30.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccc--cCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFW--SGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~--~~~~~~~vvIdaD~I 214 (477)
+...++.|.|+|||||||+.+.|+.-... ..+..|-+.++...+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~ 72 (250)
T PRK14262 27 FKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDI 72 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEc
Confidence 56789999999999999999999854310 001235667766444
No 403
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.57 E-value=0.019 Score=60.74 Aligned_cols=29 Identities=24% Similarity=0.216 Sum_probs=25.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFW 199 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~ 199 (477)
+.|-.+++.||+|+||||+|+.+++.+.+
T Consensus 36 ~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 36 RVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45778999999999999999999998864
No 404
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.57 E-value=0.034 Score=60.76 Aligned_cols=39 Identities=26% Similarity=0.289 Sum_probs=30.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+.|+-|++.||||+|||++|+.++..++ -....++...+
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e~~-----~~~~~l~~~~l 295 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANDWQ-----LPLLRLDVGKL 295 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhC-----CCEEEEEhHHh
Confidence 4578899999999999999999999874 23455554433
No 405
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.56 E-value=0.015 Score=55.12 Aligned_cols=41 Identities=22% Similarity=0.283 Sum_probs=31.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+.... +..+-+.++...+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~ 64 (201)
T cd03231 24 AAGEALQVTGPNGSGKTTLLRILAGLSP---PLAGRVLLNGGPL 64 (201)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEec
Confidence 5578999999999999999999986542 3445666665444
No 406
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=95.56 E-value=0.015 Score=57.18 Aligned_cols=44 Identities=18% Similarity=0.217 Sum_probs=30.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccc-cCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFW-SGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~-~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+++.|...... ..+..|-+.++...+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i 71 (254)
T PRK10418 27 QRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPV 71 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeec
Confidence 45789999999999999999999865420 000345667765444
No 407
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.56 E-value=0.012 Score=63.22 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=24.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
.|.-|+|.||||+||||+++.|+..++
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~ 72 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLAN 72 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 467799999999999999999999974
No 408
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.56 E-value=0.015 Score=58.42 Aligned_cols=41 Identities=20% Similarity=0.135 Sum_probs=32.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+..+ .+..|-+.++...+
T Consensus 31 ~~Ge~~~i~G~nGaGKSTLl~~i~G~~---~p~~G~i~~~g~~i 71 (279)
T PRK13635 31 YEGEWVAIVGHNGSGKSTLAKLLNGLL---LPEAGTITVGGMVL 71 (279)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC---CCCCcEEEECCEEC
Confidence 567899999999999999999998654 34556677777655
No 409
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=95.56 E-value=0.015 Score=56.60 Aligned_cols=41 Identities=22% Similarity=0.265 Sum_probs=31.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+..+. +..+.+.++...+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~i~g~~~ 64 (237)
T TIGR00968 24 PTGSLVALLGPSGSGKSTLLRIIAGLEQ---PDSGRIRLNGQDA 64 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEc
Confidence 4567999999999999999999986542 3445666765554
No 410
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.55 E-value=0.012 Score=55.82 Aligned_cols=27 Identities=22% Similarity=0.453 Sum_probs=23.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+++.=|+++|+||+||||++..+++.+
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHH
Confidence 457789999999999999999998765
No 411
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.55 E-value=0.016 Score=54.90 Aligned_cols=41 Identities=20% Similarity=0.249 Sum_probs=30.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+.... +..+.+.++.-.+
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~ 72 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRFLE---AEEGKIEIDGIDI 72 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEh
Confidence 4567999999999999999999986542 3445666655443
No 412
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=95.55 E-value=0.014 Score=57.97 Aligned_cols=41 Identities=20% Similarity=0.266 Sum_probs=31.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+... .+..|-+.++...+
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~sG~i~~~g~~~ 76 (268)
T PRK10419 36 KSGETVALLGRSGCGKSTLARLLVGLE---SPSQGNVSWRGEPL 76 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEec
Confidence 557899999999999999999998643 23445666766544
No 413
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.55 E-value=0.02 Score=58.13 Aligned_cols=46 Identities=22% Similarity=0.388 Sum_probs=38.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchH
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDV 219 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~ 219 (477)
....++++.|||||||||+.+.+-.-. +|..+-++||.-.+...|+
T Consensus 25 ~~gef~vliGpSGsGKTTtLkMINrLi---ept~G~I~i~g~~i~~~d~ 70 (309)
T COG1125 25 EEGEFLVLIGPSGSGKTTTLKMINRLI---EPTSGEILIDGEDISDLDP 70 (309)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhccc---CCCCceEEECCeecccCCH
Confidence 557899999999999999999987653 5677889999988876554
No 414
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.54 E-value=0.012 Score=58.32 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=22.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+.+.-+++.||||+||||+|+.++..+
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 334567889999999999999998764
No 415
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.54 E-value=0.085 Score=56.37 Aligned_cols=45 Identities=16% Similarity=0.343 Sum_probs=37.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
..+.++.+.||.|+||||....|+.++........+.+|..|.+|
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYR 245 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYR 245 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccch
Confidence 348899999999999999999998887433445568899999997
No 416
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=95.53 E-value=0.01 Score=57.75 Aligned_cols=39 Identities=26% Similarity=0.175 Sum_probs=29.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 212 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD 212 (477)
....++.|.|+|||||||+.+.|+.... |..+-+.++..
T Consensus 45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~ 83 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKILSGLLQ---PTSGEVRVAGL 83 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCE
Confidence 4578999999999999999999986542 33455666543
No 417
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=95.53 E-value=0.011 Score=58.29 Aligned_cols=43 Identities=21% Similarity=0.283 Sum_probs=29.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhcccc--CCCCCeEEEeCcc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS--GAATNAVVVEADA 213 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~--~~~~~~vvIdaD~ 213 (477)
....++.|.|+|||||||+.+.|+.-.... .+..+.+.++.-.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~ 72 (258)
T PRK14241 28 EPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGED 72 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEe
Confidence 457899999999999999999998653100 0124556665533
No 418
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.53 E-value=0.01 Score=56.55 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=30.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+.......+..+.+.++...+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~ 74 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPY 74 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEEC
Confidence 45789999999999999999999865420002345566665444
No 419
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.53 E-value=0.015 Score=55.94 Aligned_cols=40 Identities=20% Similarity=0.334 Sum_probs=31.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+..+++.|++|+|||+++..+..... ..+..+.++++..+
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~--~~~~~~~~i~~~~~ 81 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADAS--YGGRNARYLDAASP 81 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEEehHHh
Confidence 45678999999999999999987642 23446788887765
No 420
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.51 E-value=0.013 Score=63.50 Aligned_cols=41 Identities=20% Similarity=0.174 Sum_probs=32.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
++...+.+.|++||||||+++.|..-+ .|..|.+.+|.-++
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~---~p~~G~I~i~g~~i 399 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLL---DPLQGEVTLDGVSV 399 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCEEh
Confidence 456789999999999999999998654 35567788876555
No 421
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=95.51 E-value=0.02 Score=55.75 Aligned_cols=46 Identities=20% Similarity=0.456 Sum_probs=34.7
Q ss_pred CCCC-EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccch
Q 011773 170 ERSP-VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETD 218 (477)
Q Consensus 170 ~~~P-~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d 218 (477)
..+| ..|.++||+||||||+...+.+.+. ..-...+|-.|.+...|
T Consensus 9 ~~~~~~~i~v~Gp~GSGKTaLie~~~~~L~---~~~~~aVI~~Di~t~~D 55 (202)
T COG0378 9 KNRPMLRIGVGGPPGSGKTALIEKTLRALK---DEYKIAVITGDIYTKED 55 (202)
T ss_pred hcCceEEEEecCCCCcCHHHHHHHHHHHHH---hhCCeEEEeceeechhh
Confidence 3567 8999999999999999988776652 11247788888886444
No 422
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=95.50 E-value=0.015 Score=57.07 Aligned_cols=41 Identities=22% Similarity=0.181 Sum_probs=31.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+..+. +..|-+.++...+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~ 65 (256)
T TIGR03873 25 PPGSLTGLLGPNGSGKSTLLRLLAGALR---PDAGTVDLAGVDL 65 (256)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEEc
Confidence 5678999999999999999999986542 3445667766554
No 423
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.50 E-value=0.019 Score=62.31 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=24.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
+-|..+++.||||+||||+|+.++..+.
T Consensus 34 ~l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 34 SISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4467899999999999999999999874
No 424
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=95.50 E-value=0.015 Score=57.12 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=31.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+..+. +..|-+.++...+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~ 66 (255)
T PRK11231 26 PTGKITALIGPNGCGKSTLLKCFARLLT---PQSGTVFLGDKPI 66 (255)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCcEEEECCEEh
Confidence 5678999999999999999999986542 3445666765444
No 425
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.50 E-value=0.011 Score=57.75 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=23.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
....++.|.|+|||||||+.+.|+...
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 28 EEKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 456899999999999999999998653
No 426
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=95.49 E-value=0.016 Score=55.62 Aligned_cols=40 Identities=25% Similarity=0.274 Sum_probs=29.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 213 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~ 213 (477)
....++.|.|+|||||||+.+.|+..+. +..|.+.++...
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~~ 63 (223)
T TIGR03740 24 PKNSVYGLLGPNGAGKSTLLKMITGILR---PTSGEIIFDGHP 63 (223)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEe
Confidence 4577999999999999999999986542 334556665433
No 427
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.49 E-value=0.011 Score=57.81 Aligned_cols=44 Identities=18% Similarity=0.185 Sum_probs=30.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhcccc--CCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS--GAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~--~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+..+... .+..|-+.++...+
T Consensus 28 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i 73 (253)
T PRK14267 28 PQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNI 73 (253)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEc
Confidence 456899999999999999999998654200 00135566665444
No 428
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.49 E-value=0.015 Score=58.39 Aligned_cols=40 Identities=23% Similarity=0.224 Sum_probs=30.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 213 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~ 213 (477)
....++.|.|+|||||||+.+.|+..+. +..|-+.++.-.
T Consensus 35 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~ 74 (289)
T PRK13645 35 KKNKVTCVIGTTGSGKSTMIQLTNGLII---SETGQTIVGDYA 74 (289)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEE
Confidence 4568999999999999999999986542 334556665433
No 429
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.48 E-value=0.015 Score=61.80 Aligned_cols=40 Identities=28% Similarity=0.396 Sum_probs=34.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
-+.|.+++|.||||+|||.++++++..++ ...+.+++.++
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg-----~~~i~vsa~eL 184 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMG-----IEPIVMSAGEL 184 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcC-----CCeEEEEHHHh
Confidence 36799999999999999999999999985 35677877766
No 430
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=95.47 E-value=0.016 Score=58.80 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=30.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+...++.|.|+|||||||+.+.|+... .|..|-+.++...+
T Consensus 28 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~---~p~~G~i~~~g~~~ 68 (303)
T TIGR01288 28 ARGECFGLLGPNGAGKSTIARMLLGMI---SPDRGKITVLGEPV 68 (303)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEC
Confidence 557899999999999999999998654 23445666665443
No 431
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.47 E-value=0.011 Score=57.79 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=23.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
....++.|.|+|||||||+.+.|+.-
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14261 30 PKNRVTALIGPSGCGKSTLLRCFNRM 55 (253)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 45789999999999999999999853
No 432
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.47 E-value=0.043 Score=62.05 Aligned_cols=29 Identities=28% Similarity=0.277 Sum_probs=25.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFW 199 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~ 199 (477)
+.|..++++||+|+||||+|+.+++.+.+
T Consensus 35 rl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 35 RLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 44789999999999999999999998853
No 433
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.46 E-value=0.011 Score=57.73 Aligned_cols=44 Identities=18% Similarity=0.211 Sum_probs=29.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCC--CCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA--ATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~--~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+.-.+...+ ..|-+.++...+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~ 72 (250)
T PRK14245 27 EEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNI 72 (250)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEec
Confidence 45789999999999999999999743110011 135566665544
No 434
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.46 E-value=0.012 Score=57.66 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=30.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccc--cCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFW--SGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~--~~~~~~~vvIdaD~I 214 (477)
..+.++.|.|+|||||||+.+.|+..... ..+..|-+.++...+
T Consensus 29 ~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i 74 (251)
T PRK14244 29 YKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDV 74 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEeh
Confidence 55789999999999999999999764310 001234566655443
No 435
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.45 E-value=0.019 Score=56.69 Aligned_cols=42 Identities=17% Similarity=0.269 Sum_probs=34.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
++..++++.|+||||||+++.+++... ...+..+.+|..|+-
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~--~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEG--AREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHH--HhcCCcEEEEEecCC
Confidence 456799999999999999999987764 234567899988876
No 436
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.45 E-value=0.018 Score=58.04 Aligned_cols=40 Identities=23% Similarity=0.364 Sum_probs=28.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.+++.||+|+||||+++.++..+.-.....+..++|+.++
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~ 77 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADF 77 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhh
Confidence 3678999999999999999887641111123567776554
No 437
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.45 E-value=0.012 Score=57.63 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=23.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
....++.|.|+|||||||+.+.|+.-
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 29 NQNEITALIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45789999999999999999999753
No 438
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=95.44 E-value=0.012 Score=57.50 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=22.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
....++.|.|+|||||||+.+.|...
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 29 YPNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 45789999999999999999999753
No 439
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.44 E-value=0.012 Score=58.37 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=30.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhcccc--CCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS--GAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~--~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+.-.... .+..|.+.++...+
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 90 (268)
T PRK14248 45 EKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNI 90 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEc
Confidence 456799999999999999999997632100 02235666765444
No 440
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.44 E-value=0.012 Score=57.06 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=20.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHH
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIM 194 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La 194 (477)
+.+++|+||||+||||+.+.+.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHH
Confidence 5899999999999999999987
No 441
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.44 E-value=0.012 Score=57.59 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=30.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccc--cCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFW--SGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~--~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+..... ..+..+-+.++...+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i 73 (251)
T PRK14270 28 YENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNI 73 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEec
Confidence 45789999999999999999999864310 001235666765444
No 442
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.43 E-value=0.02 Score=57.45 Aligned_cols=51 Identities=24% Similarity=0.318 Sum_probs=37.2
Q ss_pred cccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 161 DVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 161 ~v~~~~~~~~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.+...+...-...-++-|.|||||||||+.+.++.-. .+..+-+.++...+
T Consensus 17 ~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~---~p~~G~V~~~g~~v 67 (248)
T COG1116 17 EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLE---KPTSGEVLLDGRPV 67 (248)
T ss_pred EEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCccc
Confidence 4444444434667899999999999999999997543 45556677777665
No 443
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=95.43 E-value=0.016 Score=57.96 Aligned_cols=41 Identities=24% Similarity=0.294 Sum_probs=32.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|...+. +..|.+.++...+
T Consensus 34 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i 74 (280)
T PRK13633 34 KKGEFLVILGRNGSGKSTIAKHMNALLI---PSEGKVYVDGLDT 74 (280)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEec
Confidence 5578999999999999999999986542 3456677776555
No 444
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=95.43 E-value=0.014 Score=61.70 Aligned_cols=39 Identities=23% Similarity=0.340 Sum_probs=29.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
..|.-+++.||||+|||++|+.++..++ ..+..++...+
T Consensus 163 ~~p~gvLL~GppGtGKT~lAkaia~~~~-----~~~i~v~~~~l 201 (389)
T PRK03992 163 EPPKGVLLYGPPGTGKTLLAKAVAHETN-----ATFIRVVGSEL 201 (389)
T ss_pred CCCCceEEECCCCCChHHHHHHHHHHhC-----CCEEEeehHHH
Confidence 4477899999999999999999999874 23455544433
No 445
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.43 E-value=0.012 Score=58.20 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=28.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 211 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIda 211 (477)
....++.|.|+|||||||+.+.|+.... +..+.+.++.
T Consensus 23 ~~Ge~~~i~G~NGsGKSTLlk~L~G~~~---p~~G~i~~~g 60 (246)
T cd03237 23 SESEVIGILGPNGIGKTTFIKMLAGVLK---PDEGDIEIEL 60 (246)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECC
Confidence 3567999999999999999999976542 3334555554
No 446
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.43 E-value=0.016 Score=58.18 Aligned_cols=41 Identities=27% Similarity=0.368 Sum_probs=31.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCC--------CCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAA--------TNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~--------~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+..+. +. .+-+.++...+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~laG~~~---p~~~~~~~~~~G~i~~~g~~~ 73 (272)
T PRK13547 25 EPGRVTALLGRNGAGKSTLLKALAGDLT---GGGAPRGARVTGDVTLNGEPL 73 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC---CcccccccCCceEEEECCEEc
Confidence 5578999999999999999999986542 22 35667766554
No 447
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=95.43 E-value=0.017 Score=57.25 Aligned_cols=41 Identities=20% Similarity=0.223 Sum_probs=31.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+..+ .+..|-+.++...+
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i 75 (265)
T TIGR02769 35 EEGETVGLLGRSGCGKSTLARLLLGLE---KPAQGTVSFRGQDL 75 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEEc
Confidence 557899999999999999999998654 24456677765444
No 448
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.42 E-value=0.016 Score=63.78 Aligned_cols=27 Identities=37% Similarity=0.516 Sum_probs=24.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFW 199 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~ 199 (477)
..+++|+||+||||||..+.|++++++
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~elg~ 71 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKELGF 71 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 459999999999999999999999863
No 449
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.42 E-value=0.013 Score=53.20 Aligned_cols=41 Identities=20% Similarity=0.372 Sum_probs=30.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|...+. +..+-+.++...+
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~ 63 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDI 63 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEc
Confidence 4457999999999999999999986542 3345566665544
No 450
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.42 E-value=0.017 Score=58.21 Aligned_cols=42 Identities=14% Similarity=0.277 Sum_probs=32.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
....++.|.|+|||||||+.+.|..-+ .+..|-+.++...+.
T Consensus 31 ~~Ge~~~i~G~nGaGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~ 72 (287)
T PRK13637 31 EDGEFVGLIGHTGSGKSTLIQHLNGLL---KPTSGKIIIDGVDIT 72 (287)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC---CCCccEEEECCEECC
Confidence 457899999999999999999998654 344566777776653
No 451
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=95.42 E-value=0.012 Score=57.90 Aligned_cols=27 Identities=30% Similarity=0.297 Sum_probs=23.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
.|-+..|.|+|||||||+.++|.--++
T Consensus 24 ~~~~~~IvG~NGsGKStll~Ai~~ll~ 50 (251)
T cd03273 24 DPQFNAITGLNGSGKSNILDAICFVLG 50 (251)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 477899999999999999999987664
No 452
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.41 E-value=0.012 Score=57.90 Aligned_cols=27 Identities=26% Similarity=0.246 Sum_probs=23.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
....++.|.|+|||||||+.+.|+...
T Consensus 36 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 36 PENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 457799999999999999999998653
No 453
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.40 E-value=0.012 Score=57.55 Aligned_cols=44 Identities=25% Similarity=0.288 Sum_probs=30.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhcc--ccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESF--WSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~--~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+..+. ...+..+-+.++.-.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i 73 (252)
T PRK14256 28 PENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDI 73 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEc
Confidence 4577999999999999999999987531 0001134566665444
No 454
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.40 E-value=0.018 Score=60.39 Aligned_cols=43 Identities=16% Similarity=0.424 Sum_probs=35.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 216 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike 216 (477)
+..-++.+-|||||||||+.+.|+- +..|..+-+.|+.-++..
T Consensus 29 ~~Gef~~lLGPSGcGKTTlLR~IAG---fe~p~~G~I~l~G~~i~~ 71 (352)
T COG3842 29 KKGEFVTLLGPSGCGKTTLLRMIAG---FEQPSSGEILLDGEDITD 71 (352)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC---CCCCCCceEEECCEECCC
Confidence 4567899999999999999999984 346777888898877754
No 455
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=95.40 E-value=0.013 Score=56.14 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~ 196 (477)
++.|.|+|||||||+.+.+.--
T Consensus 24 ~~~i~G~nGsGKStll~al~~l 45 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWV 45 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999998644
No 456
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=95.40 E-value=0.012 Score=57.35 Aligned_cols=44 Identities=20% Similarity=0.264 Sum_probs=29.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccc--cCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFW--SGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~--~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+.-... ..+..|-+.++...+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~ 72 (250)
T PRK14240 27 EENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDI 72 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc
Confidence 45789999999999999999999853210 000135566665443
No 457
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=95.39 E-value=0.023 Score=60.74 Aligned_cols=48 Identities=21% Similarity=0.333 Sum_probs=33.9
Q ss_pred ccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 164 VPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 164 ~~~~~~~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+|+...-++.-++++.|.|||||||+++.|..-+ .|..|-..+|..-+
T Consensus 340 gPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~---~PqsG~I~ldg~pV 387 (546)
T COG4615 340 GPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLY---QPQSGEILLDGKPV 387 (546)
T ss_pred cceeeEEecCcEEEEECCCCCcHHHHHHHHhccc---CCCCCceeECCccC
Confidence 4444444677899999999999999999886543 34445566654433
No 458
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.39 E-value=0.018 Score=57.59 Aligned_cols=41 Identities=24% Similarity=0.120 Sum_probs=32.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|..-+ .+..|-+.++...+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~ 69 (274)
T PRK13647 29 PEGSKTALLGPNGAGKSTLLLHLNGIY---LPQRGRVKVMGREV 69 (274)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC---CCCceEEEECCEEC
Confidence 557899999999999999999998654 23456677776555
No 459
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.39 E-value=0.018 Score=57.59 Aligned_cols=41 Identities=20% Similarity=0.291 Sum_probs=31.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+..+ .+..|-+.++.-.+
T Consensus 28 ~~Ge~~~i~G~NGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~ 68 (277)
T PRK13652 28 PRNSRIAVIGPNGAGKSTLFRHFNGIL---KPTSGSVLIRGEPI 68 (277)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC---CCCceEEEECCEEC
Confidence 567899999999999999999998654 24456677765444
No 460
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.38 E-value=0.023 Score=62.26 Aligned_cols=29 Identities=28% Similarity=0.256 Sum_probs=25.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
.+.|.++++.||+|+||||+|+.++..+.
T Consensus 33 ~~l~ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 33 GRLGHAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34578899999999999999999999874
No 461
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.38 E-value=0.013 Score=57.19 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=23.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
....++.|.|+|||||||+++.|+...
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (249)
T PRK14253 27 PARQVTALIGPSGCGKSTLLRCLNRMN 53 (249)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 457899999999999999999998653
No 462
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.38 E-value=0.021 Score=58.48 Aligned_cols=45 Identities=27% Similarity=0.337 Sum_probs=30.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCC----CCeEEEeCcccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAA----TNAVVVEADAFK 215 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~----~~~vvIdaD~Ik 215 (477)
..|..++|.||+|+||||+++.+...+.-.... -..++||+....
T Consensus 38 ~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~ 86 (365)
T TIGR02928 38 SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILD 86 (365)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCC
Confidence 446678999999999999999998764200000 136678876654
No 463
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.37 E-value=0.016 Score=60.19 Aligned_cols=33 Identities=33% Similarity=0.506 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 212 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD 212 (477)
-|+|.|+||+||||+++.++..++| .+..|+.+
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l~~-----~~~rV~~~ 98 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARLNW-----PCVRVNLD 98 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHHCC-----CeEEEEec
Confidence 3889999999999999999999875 45555544
No 464
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.36 E-value=0.013 Score=57.94 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=23.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
....++.|.|+|||||||+.+.|+..+
T Consensus 28 ~~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 28 KPGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 567899999999999999999998653
No 465
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=95.36 E-value=0.017 Score=59.83 Aligned_cols=41 Identities=24% Similarity=0.328 Sum_probs=31.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+...++.|.|+|||||||+.+.|...+ .|..|-+.++...+
T Consensus 29 ~~Gei~~iiG~nGsGKSTLlk~L~Gl~---~p~~G~I~~~g~~i 69 (343)
T PRK11153 29 PAGEIFGVIGASGAGKSTLIRCINLLE---RPTSGRVLVDGQDL 69 (343)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC---CCCceEEEECCEEC
Confidence 567899999999999999999998654 23456677766554
No 466
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.36 E-value=0.019 Score=57.60 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=31.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|..-+ .|..|-++++.-.+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i 71 (279)
T PRK13650 31 KQGEWLSIIGHNGSGKSTTVRLIDGLL---EAESGQIIIDGDLL 71 (279)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCEEC
Confidence 457899999999999999999997653 34456677776555
No 467
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=95.36 E-value=0.012 Score=57.23 Aligned_cols=43 Identities=19% Similarity=0.235 Sum_probs=31.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+...++.|.|+|||||||+.+.|...... .+..|-+.++...+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~~~G~i~~~g~~~ 67 (248)
T PRK09580 25 RPGEVHAIMGPNGSGKSTLSATLAGREDY-EVTGGTVEFKGKDL 67 (248)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCccC-CCCceEEEECCCcc
Confidence 55789999999999999999998865200 12345566766544
No 468
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.35 E-value=0.014 Score=49.66 Aligned_cols=22 Identities=18% Similarity=0.513 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 011773 176 LLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 176 IlLaGp~GSGKSTlAr~La~~l 197 (477)
|+|.|++||||||+.+.|....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6889999999999999998764
No 469
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.35 E-value=0.02 Score=57.08 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=25.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCc
Q 011773 176 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 212 (477)
Q Consensus 176 IlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD 212 (477)
+++.|++|+||||+|+.++..++ ..+..++..
T Consensus 24 vLL~G~~GtGKT~lA~~la~~lg-----~~~~~i~~~ 55 (262)
T TIGR02640 24 VHLRGPAGTGKTTLAMHVARKRD-----RPVMLINGD 55 (262)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC-----CCEEEEeCC
Confidence 45789999999999999998764 356667654
No 470
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.34 E-value=0.032 Score=58.60 Aligned_cols=48 Identities=25% Similarity=0.342 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 137 MKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 137 ~~r~~~~l~ee~~~~~~~~~~~~~~v~~~~~~~~~~P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
...+...||+-++.+|.. . ..+.+++++.||.|+||||+++.|...+.
T Consensus 66 ~~~~i~~lV~~fk~AA~g-----~---------~~~krIl~L~GPvg~GKSsl~~~Lk~~le 113 (358)
T PF08298_consen 66 MEETIERLVNYFKSAAQG-----L---------EERKRILLLLGPVGGGKSSLAELLKRGLE 113 (358)
T ss_pred cHHHHHHHHHHHHHHHhc-----c---------CccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 567788888888888865 2 35578999999999999999999998763
No 471
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.34 E-value=0.041 Score=59.06 Aligned_cols=45 Identities=16% Similarity=0.296 Sum_probs=32.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
..+.++.+.|+||+||||+...|+..+-.........++.+|.++
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~r 233 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYR 233 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcc
Confidence 357899999999999999999888653100111345677888875
No 472
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=95.34 E-value=0.012 Score=57.35 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=30.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+...++.|.|+|||||||+.+.|+.... ..+..|.+.++...+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~-~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 31 NKGEIHAIMGPNGSGKSTLSKVIAGHPA-YKILEGDILFKGESI 73 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCc-CcCCCceEEECCEEc
Confidence 4578999999999999999999875310 112345667765444
No 473
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.33 E-value=0.014 Score=57.09 Aligned_cols=44 Identities=20% Similarity=0.196 Sum_probs=30.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.++.-.....+..|-+.++...+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 26 EQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 45689999999999999999999864310012345566765444
No 474
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=95.32 E-value=0.018 Score=57.10 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=30.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+.... +..|.+.++...+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~ 71 (265)
T PRK10253 31 PDGHFTAIIGPNGCGKSTLLRTLSRLMT---PAHGHVWLDGEHI 71 (265)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEEh
Confidence 4578999999999999999999986542 3345666665443
No 475
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.31 E-value=0.018 Score=53.31 Aligned_cols=36 Identities=19% Similarity=0.346 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 212 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD 212 (477)
++.++|++||||||++..|...+. ..+-...+|..|
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~--~~G~~V~viK~~ 36 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALK--ARGYRVATIKHD 36 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecc
Confidence 478899999999999999988752 222345566544
No 476
>PLN03025 replication factor C subunit; Provisional
Probab=95.31 E-value=0.048 Score=55.71 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=21.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
|. +++.||+|+||||++..++..+
T Consensus 35 ~~-lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 35 PN-LILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred ce-EEEECCCCCCHHHHHHHHHHHH
Confidence 44 5689999999999999999886
No 477
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.31 E-value=0.021 Score=57.24 Aligned_cols=44 Identities=20% Similarity=0.151 Sum_probs=31.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+..+.......|-+.++...+
T Consensus 31 ~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~ 74 (282)
T PRK13640 31 PRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITL 74 (282)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEEC
Confidence 45789999999999999999999865421110014677776655
No 478
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.30 E-value=0.019 Score=57.69 Aligned_cols=41 Identities=24% Similarity=0.307 Sum_probs=31.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|..-. .+..|-+.++.-.+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~L~Gl~---~p~~G~i~~~g~~i 71 (286)
T PRK13646 31 EQGKYYAIVGQTGSGKSTLIQNINALL---KPTTGTVTVDDITI 71 (286)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCEEC
Confidence 456899999999999999999998654 34456677765444
No 479
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.30 E-value=0.019 Score=57.40 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=31.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|..-+ .+..|-+.++.-.+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~---~~~~G~i~~~g~~~ 66 (275)
T PRK13639 26 EKGEMVALLGPNGAGKSTLFLHFNGIL---KPTSGEVLIKGEPI 66 (275)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEC
Confidence 557899999999999999999997643 23445667766554
No 480
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=95.30 E-value=1.3 Score=44.09 Aligned_cols=157 Identities=15% Similarity=0.109 Sum_probs=89.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHH
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 250 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~ 250 (477)
+.|+||++-|..||||+.+.+.|...+. +....|. .|. .|.+ .+. ...-++.
T Consensus 29 ~~~vlIv~eG~DaAGKg~~I~~l~~~lD-----PRg~~v~--~~~-------------~pt~----eE~----~~p~lwR 80 (230)
T TIGR03707 29 GARVVIVFEGRDAAGKGGTIKRITEHLN-----PRGARVV--ALP-------------KPSD----RER----TQWYFQR 80 (230)
T ss_pred CCCEEEEEeCCCCCCchHHHHHHHHhcC-----CCeeEEE--eCC-------------CCCH----HHH----cChHHHH
Confidence 4699999999999999999999999874 2222221 121 1111 011 1112233
Q ss_pred HHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHH-hhhccchhhHhhhhhhhccC
Q 011773 251 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWE-QVKEGEEDYQQKENRQVFSR 329 (477)
Q Consensus 251 li~~aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~-~v~~~~~~~~~~~~~~~~~~ 329 (477)
.-...=..|.-.||+.+.-....++.+ + |...+.-|. .+.+- ..+++....
T Consensus 81 fw~~lP~~G~i~IF~rSwY~~~lv~rv-------~---------------~~~~~~~~~~~~~~I------~~FEr~L~~ 132 (230)
T TIGR03707 81 YVQHLPAAGEIVLFDRSWYNRAGVERV-------M---------------GFCTDEEYEEFLRQV------PEFERMLVR 132 (230)
T ss_pred HHHhCCCCCeEEEEeCchhhhHHHHHh-------c---------------CCCCHHHHHHHHHHH------HHHHHHHHH
Confidence 444455678899999876554333321 1 112222332 22211 122334567
Q ss_pred CCceEEEEEEecCHHHHHHHHHHhhhc--cccccc-hh-hhhhHHHHHHHhHHHhhcc
Q 011773 330 KPYRIELVGVVCDAYLAVVRGIRRAIM--MKRAVR-VN-SQLKSHKRFANAFRNYCEL 383 (477)
Q Consensus 330 ~pY~I~lv~V~~d~elav~Rv~~R~~~--gGr~Vp-~~-~ql~~~~rf~~~~~~y~~l 383 (477)
.|+.|.=++++.+.+.+..|..+|-.. +.-.+. .+ .....|.++...+......
T Consensus 133 ~G~~IlKfflhIsk~eQ~kRl~~r~~~p~k~Wk~~~~D~~~~~~yd~y~~a~e~~l~~ 190 (230)
T TIGR03707 133 DGIHLFKYWLSVSREEQLRRFKARIDDPLKQWKLSPMDLASLDRWDDYSRAKDEMFAR 190 (230)
T ss_pred CCCEEEEEEEECCHHHHHHHHHHHhcCCcccccCCHHHHHHHHhHHHHHHHHHHHHHh
Confidence 899888899999999999999998753 222222 11 2233455555555554443
No 481
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.29 E-value=0.017 Score=53.98 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=19.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+.+.+|.||||+||||++..+...+
T Consensus 17 ~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 17 NGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp SE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCChHHHHHHHHHHh
Confidence 4489999999999999888877664
No 482
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=95.29 E-value=0.013 Score=56.69 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+.++.+.|||||||||+.+.+.--+
T Consensus 25 ~~i~~ivGpNGaGKSTll~~i~~~~ 49 (212)
T cd03274 25 KSFSAIVGPNGSGKSNVIDSMLFVF 49 (212)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999987443
No 483
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=95.29 E-value=0.014 Score=57.56 Aligned_cols=44 Identities=18% Similarity=0.198 Sum_probs=30.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+.......+..+-+.++.-.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~ 71 (262)
T PRK09984 28 HHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTV 71 (262)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEec
Confidence 45789999999999999999999865421000124566665443
No 484
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=95.29 E-value=0.016 Score=50.44 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
...|.+.|++||||||+...+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999998754
No 485
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.28 E-value=0.014 Score=61.32 Aligned_cols=25 Identities=36% Similarity=0.650 Sum_probs=22.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
.-+|+++||+||||||+.+.+...+
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999998765
No 486
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=95.28 E-value=0.022 Score=58.32 Aligned_cols=27 Identities=30% Similarity=0.238 Sum_probs=23.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
.|.-+++.||+|+||||+++.++..++
T Consensus 50 ~~~~~ll~GppG~GKT~la~~ia~~l~ 76 (328)
T PRK00080 50 ALDHVLLYGPPGLGKTTLANIIANEMG 76 (328)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHHhC
Confidence 355678999999999999999999975
No 487
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.28 E-value=0.021 Score=57.15 Aligned_cols=41 Identities=20% Similarity=0.140 Sum_probs=32.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+...++.|.|+|||||||+.+.|...+ .+..|-+.++...+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~ 66 (274)
T PRK13644 26 KKGEYIGIIGKNGSGKSTLALHLNGLL---RPQKGKVLVSGIDT 66 (274)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEECCEEC
Confidence 567899999999999999999998654 24456677776555
No 488
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.26 E-value=0.015 Score=55.03 Aligned_cols=43 Identities=23% Similarity=0.332 Sum_probs=31.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+.... ..+..+-+.++...+
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~~-~~~~~G~i~~~g~~~ 75 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRRT-GLGVSGEVLINGRPL 75 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCCceEEEECCEeC
Confidence 5578999999999999999999986540 013345666665444
No 489
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.26 E-value=0.026 Score=65.53 Aligned_cols=29 Identities=24% Similarity=0.253 Sum_probs=26.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFW 199 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~ 199 (477)
+-|..++++||+|+||||+|+.|++.++.
T Consensus 36 rl~HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 36 RLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhccC
Confidence 45788999999999999999999999853
No 490
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=95.26 E-value=0.015 Score=57.80 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=30.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhcccc--CCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS--GAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~--~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|....... .+..|.+.++.-.+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i 88 (267)
T PRK14235 43 PEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDI 88 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEC
Confidence 567899999999999999999998654200 01245666765444
No 491
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.25 E-value=0.015 Score=57.35 Aligned_cols=44 Identities=18% Similarity=0.208 Sum_probs=30.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhcccc--CCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS--GAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~--~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|....... .+..|-+.++...+
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i 81 (258)
T PRK14268 36 PKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDI 81 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEc
Confidence 457899999999999999999998643100 01235566665444
No 492
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.24 E-value=0.04 Score=59.80 Aligned_cols=39 Identities=23% Similarity=0.332 Sum_probs=29.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+.|.-+++.||||+||||+++.++...+ ..+..+++..+
T Consensus 86 ~~~~giLL~GppGtGKT~la~alA~~~~-----~~~~~i~~~~~ 124 (495)
T TIGR01241 86 KIPKGVLLVGPPGTGKTLLAKAVAGEAG-----VPFFSISGSDF 124 (495)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHcC-----CCeeeccHHHH
Confidence 3466799999999999999999998864 23444544443
No 493
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.24 E-value=0.015 Score=57.58 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=31.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
-+...++.|.|||||||||+...+.-- ..|..+.+.|+.-++
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLniig~l---d~pt~G~v~i~g~d~ 69 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLLGGL---DKPTSGEVLINGKDL 69 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc---cCCCCceEEECCEEc
Confidence 356789999999999999999988643 245566777776333
No 494
>PRK05973 replicative DNA helicase; Provisional
Probab=95.24 E-value=0.022 Score=56.66 Aligned_cols=42 Identities=19% Similarity=0.274 Sum_probs=31.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....+++|+|+||+||||++-+++... ...+..+.+++.++=
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~--a~~Ge~vlyfSlEes 103 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEA--MKSGRTGVFFTLEYT 103 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEEeCC
Confidence 345799999999999999999987753 123455778866553
No 495
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.23 E-value=0.047 Score=62.12 Aligned_cols=67 Identities=18% Similarity=0.265 Sum_probs=0.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHH
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 250 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~ 250 (477)
..|.-+++.||||+||||+++.++..++ ..+..|+..++ ++.. ...+...+..
T Consensus 210 ~~~~giLL~GppGtGKT~laraia~~~~-----~~~i~i~~~~i---------~~~~-------------~g~~~~~l~~ 262 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLAKAVANEAG-----AYFISINGPEI---------MSKY-------------YGESEERLRE 262 (733)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHhC-----CeEEEEecHHH---------hccc-------------ccHHHHHHHH
Q ss_pred HHHHHHhCCCcEEE
Q 011773 251 LLVTALNEGRDVIM 264 (477)
Q Consensus 251 li~~aL~~G~sVIi 264 (477)
+...+....-++|+
T Consensus 263 lf~~a~~~~p~il~ 276 (733)
T TIGR01243 263 IFKEAEENAPSIIF 276 (733)
T ss_pred HHHHHHhcCCcEEE
No 496
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.23 E-value=0.021 Score=57.61 Aligned_cols=42 Identities=21% Similarity=0.201 Sum_probs=32.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
-....++.|.|+|||||||+.+.|...+ .+..|.+.++.-.+
T Consensus 29 i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i 70 (288)
T PRK13643 29 VKKGSYTALIGHTGSGKSTLLQHLNGLL---QPTEGKVTVGDIVV 70 (288)
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhcCC---CCCCcEEEECCEEC
Confidence 3567899999999999999999998654 24456677766544
No 497
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.23 E-value=0.027 Score=61.93 Aligned_cols=29 Identities=28% Similarity=0.299 Sum_probs=25.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFW 199 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~ 199 (477)
+.|..+++.||+|+||||+|+.+++.+.+
T Consensus 36 ~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 36 RLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45778999999999999999999998753
No 498
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.23 E-value=0.022 Score=55.38 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=31.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|...+. +..|.++++...+
T Consensus 23 ~~Ge~~~i~G~nG~GKStLl~~l~G~~~---p~~G~v~i~g~~~ 63 (235)
T cd03299 23 ERGDYFVILGPTGSGKSVLLETIAGFIK---PDSGKILLNGKDI 63 (235)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEc
Confidence 4568999999999999999999976542 3445677766544
No 499
>PRK09087 hypothetical protein; Validated
Probab=95.22 E-value=0.016 Score=56.80 Aligned_cols=84 Identities=13% Similarity=0.218 Sum_probs=48.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHHHHHH
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT 254 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~li~~ 254 (477)
.++|.|++||||||+++.+.... ++.+|+.+.+... . ...+.....--|....... ....+..++..
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~-------~~~~i~~~~~~~~-~-~~~~~~~~l~iDDi~~~~~----~~~~lf~l~n~ 112 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKS-------DALLIHPNEIGSD-A-ANAAAEGPVLIEDIDAGGF----DETGLFHLINS 112 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhc-------CCEEecHHHcchH-H-HHhhhcCeEEEECCCCCCC----CHHHHHHHHHH
Confidence 46899999999999999988775 4678888766321 1 1111110000000000000 01224457777
Q ss_pred HHhCCCcEEEeCCCCCH
Q 011773 255 ALNEGRDVIMDGTLSWV 271 (477)
Q Consensus 255 aL~~G~sVIiDgT~s~~ 271 (477)
+.+.|..+|+-++..-+
T Consensus 113 ~~~~g~~ilits~~~p~ 129 (226)
T PRK09087 113 VRQAGTSLLMTSRLWPS 129 (226)
T ss_pred HHhCCCeEEEECCCChH
Confidence 88888888888776543
No 500
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.21 E-value=0.023 Score=62.69 Aligned_cols=45 Identities=20% Similarity=0.286 Sum_probs=33.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
+...+|.|.|++|+||||++..|+..+--...+..+.+|+.|.++
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyR 392 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQR 392 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccccc
Confidence 346788999999999999999988754211112457899999875
Done!