Query 011773
Match_columns 477
No_of_seqs 298 out of 1620
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 15:01:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011773.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011773hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gvn_B Zeta; postsegregational 99.7 1.6E-16 5.6E-21 157.2 20.5 169 170-393 30-207 (287)
2 2p5t_B PEZT; postsegregational 99.5 2.5E-13 8.5E-18 130.9 17.7 168 170-392 29-205 (253)
3 1ly1_A Polynucleotide kinase; 99.5 2.8E-13 9.5E-18 120.9 14.6 140 172-376 1-146 (181)
4 1ltq_A Polynucleotide kinase; 99.4 3.5E-12 1.2E-16 124.4 16.6 142 172-377 1-147 (301)
5 2rhm_A Putative kinase; P-loop 99.4 5.7E-12 1.9E-16 114.0 14.6 129 171-359 3-131 (193)
6 1tev_A UMP-CMP kinase; ploop, 99.3 2E-10 7E-15 103.3 20.5 36 172-214 2-37 (196)
7 3zvl_A Bifunctional polynucleo 99.3 1.2E-11 4.2E-16 128.2 14.0 122 170-372 255-378 (416)
8 1qf9_A UMP/CMP kinase, protein 99.3 2E-10 6.9E-15 103.2 18.5 37 171-214 4-40 (194)
9 1ukz_A Uridylate kinase; trans 99.2 4.9E-10 1.7E-14 102.8 19.3 162 170-393 12-185 (203)
10 1knq_A Gluconate kinase; ALFA/ 99.2 1.7E-10 5.9E-15 103.5 15.9 120 171-354 6-125 (175)
11 3t61_A Gluconokinase; PSI-biol 99.2 9.6E-11 3.3E-15 107.9 13.4 118 171-355 16-133 (202)
12 3lw7_A Adenylate kinase relate 99.2 2.6E-10 8.9E-15 100.0 15.5 154 174-393 2-160 (179)
13 2c95_A Adenylate kinase 1; tra 99.2 3.8E-10 1.3E-14 102.2 15.4 37 171-214 7-43 (196)
14 3a4m_A L-seryl-tRNA(SEC) kinas 99.2 1.6E-10 5.4E-15 111.9 13.6 134 172-373 3-136 (260)
15 1qhx_A CPT, protein (chloramph 99.2 1.4E-10 4.8E-15 103.9 11.8 128 172-354 2-134 (178)
16 4eun_A Thermoresistant glucoki 99.2 4.5E-10 1.5E-14 103.8 15.1 122 170-355 26-147 (200)
17 3cm0_A Adenylate kinase; ATP-b 99.1 4.7E-10 1.6E-14 101.2 13.9 37 171-214 2-38 (186)
18 2bwj_A Adenylate kinase 5; pho 99.1 2.7E-10 9.1E-15 103.5 11.9 37 171-214 10-46 (199)
19 2axn_A 6-phosphofructo-2-kinas 99.1 9.8E-10 3.4E-14 117.5 18.0 133 170-356 32-171 (520)
20 2vli_A Antibiotic resistance p 99.1 1.9E-10 6.6E-15 103.3 10.4 121 172-354 4-126 (183)
21 4i1u_A Dephospho-COA kinase; s 99.0 4.6E-10 1.6E-14 107.4 9.0 157 172-393 8-184 (210)
22 3fb4_A Adenylate kinase; psych 99.0 2.5E-09 8.4E-14 99.1 13.6 33 175-214 2-34 (216)
23 3dl0_A Adenylate kinase; phosp 99.0 2.1E-09 7.1E-14 99.8 12.2 33 175-214 2-34 (216)
24 2cdn_A Adenylate kinase; phosp 99.0 4.9E-09 1.7E-13 96.3 13.5 38 170-214 17-54 (201)
25 3tlx_A Adenylate kinase 2; str 98.9 7.8E-09 2.7E-13 99.1 13.8 38 170-214 26-63 (243)
26 2pbr_A DTMP kinase, thymidylat 98.9 4.5E-08 1.5E-12 88.0 17.4 87 175-267 2-91 (195)
27 3kb2_A SPBC2 prophage-derived 98.9 3.8E-08 1.3E-12 86.8 16.3 35 174-215 2-36 (173)
28 2f6r_A COA synthase, bifunctio 98.9 1.3E-08 4.5E-13 99.9 14.3 36 171-214 73-108 (281)
29 2yvu_A Probable adenylyl-sulfa 98.9 1.6E-08 5.4E-13 91.8 12.5 92 170-275 10-101 (186)
30 3trf_A Shikimate kinase, SK; a 98.8 3.7E-08 1.3E-12 88.8 13.6 37 172-215 4-40 (185)
31 3umf_A Adenylate kinase; rossm 98.8 2.3E-08 7.7E-13 95.8 12.1 38 170-214 26-63 (217)
32 2qor_A Guanylate kinase; phosp 98.8 2.9E-09 1E-13 98.6 5.5 28 170-197 9-36 (204)
33 1jjv_A Dephospho-COA kinase; P 98.8 1.4E-08 4.9E-13 93.4 10.1 34 173-214 2-35 (206)
34 1aky_A Adenylate kinase; ATP:A 98.8 3.6E-08 1.2E-12 92.0 12.7 37 171-214 2-38 (220)
35 3vaa_A Shikimate kinase, SK; s 98.8 1.4E-07 4.8E-12 86.9 16.5 38 171-215 23-60 (199)
36 2bdt_A BH3686; alpha-beta prot 98.8 1E-07 3.5E-12 86.5 15.3 123 173-355 2-124 (189)
37 2xb4_A Adenylate kinase; ATP-b 98.8 4.6E-08 1.6E-12 92.2 13.4 33 175-214 2-34 (223)
38 2pt5_A Shikimate kinase, SK; a 98.8 6.3E-08 2.2E-12 85.7 13.1 34 175-215 2-35 (168)
39 1e6c_A Shikimate kinase; phosp 98.8 1.2E-07 4E-12 84.2 14.5 34 174-214 3-36 (173)
40 2plr_A DTMP kinase, probable t 98.8 1.7E-07 5.7E-12 85.4 15.8 27 172-198 3-29 (213)
41 3uie_A Adenylyl-sulfate kinase 98.7 5.7E-08 1.9E-12 89.6 11.9 94 170-277 22-115 (200)
42 3be4_A Adenylate kinase; malar 98.7 1.5E-07 5.2E-12 88.0 14.7 35 173-214 5-39 (217)
43 2ze6_A Isopentenyl transferase 98.7 5.4E-08 1.8E-12 94.1 11.9 35 174-215 2-36 (253)
44 2grj_A Dephospho-COA kinase; T 98.7 2.4E-08 8.2E-13 93.5 8.9 38 171-215 10-47 (192)
45 1m7g_A Adenylylsulfate kinase; 98.7 7.8E-08 2.7E-12 89.4 11.8 85 170-267 22-106 (211)
46 1kht_A Adenylate kinase; phosp 98.7 7.5E-08 2.6E-12 86.4 11.1 40 173-214 3-42 (192)
47 2z0h_A DTMP kinase, thymidylat 98.7 5.7E-07 2E-11 81.2 15.9 23 175-197 2-24 (197)
48 1bif_A 6-phosphofructo-2-kinas 98.7 2.3E-07 7.9E-12 97.2 14.9 104 170-281 36-145 (469)
49 2iyv_A Shikimate kinase, SK; t 98.7 6.4E-08 2.2E-12 87.3 9.2 35 173-214 2-36 (184)
50 4gp7_A Metallophosphoesterase; 98.7 3.1E-07 1.1E-11 83.1 13.6 151 171-393 7-157 (171)
51 1zd8_A GTP:AMP phosphotransfer 98.6 3.4E-07 1.2E-11 85.8 14.0 37 171-214 5-41 (227)
52 1nks_A Adenylate kinase; therm 98.6 3.3E-07 1.1E-11 82.0 13.2 87 174-267 2-93 (194)
53 1nn5_A Similar to deoxythymidy 98.6 2.1E-07 7.2E-12 85.3 12.0 29 170-198 6-34 (215)
54 2wwf_A Thymidilate kinase, put 98.6 4.9E-08 1.7E-12 89.5 7.4 29 170-198 7-35 (212)
55 1zak_A Adenylate kinase; ATP:A 98.6 4.1E-07 1.4E-11 84.8 13.8 36 172-214 4-39 (222)
56 1ak2_A Adenylate kinase isoenz 98.6 2.8E-07 9.6E-12 87.0 12.7 38 170-214 13-50 (233)
57 3sr0_A Adenylate kinase; phosp 98.6 8.6E-07 3E-11 83.8 15.9 33 175-214 2-34 (206)
58 2qt1_A Nicotinamide riboside k 98.6 5.9E-07 2E-11 82.8 14.4 40 170-215 18-57 (207)
59 1vht_A Dephospho-COA kinase; s 98.6 3.9E-07 1.3E-11 84.6 13.2 35 172-214 3-37 (218)
60 1uj2_A Uridine-cytidine kinase 98.6 7.7E-07 2.6E-11 85.1 15.3 46 170-215 19-67 (252)
61 1kag_A SKI, shikimate kinase I 98.6 4.3E-07 1.5E-11 80.7 12.4 36 172-214 3-38 (173)
62 3iij_A Coilin-interacting nucl 98.6 4.5E-08 1.6E-12 88.2 6.0 37 171-214 9-45 (180)
63 3r20_A Cytidylate kinase; stru 98.6 6.8E-07 2.3E-11 86.5 14.6 37 171-214 7-43 (233)
64 4eaq_A DTMP kinase, thymidylat 98.6 1.3E-06 4.5E-11 83.3 15.9 29 170-198 23-51 (229)
65 1y63_A LMAJ004144AAA protein; 98.6 2.5E-07 8.4E-12 84.4 10.4 38 170-214 7-45 (184)
66 1e4v_A Adenylate kinase; trans 98.5 4.2E-07 1.4E-11 84.5 11.5 33 175-214 2-34 (214)
67 2pez_A Bifunctional 3'-phospho 98.5 8.1E-07 2.8E-11 80.0 11.9 43 171-215 3-45 (179)
68 1x6v_B Bifunctional 3'-phospho 98.5 9.1E-07 3.1E-11 96.9 14.0 122 171-352 50-171 (630)
69 1zp6_A Hypothetical protein AT 98.5 1.5E-06 5.1E-11 78.4 12.9 40 171-215 7-46 (191)
70 1cke_A CK, MSSA, protein (cyti 98.5 1.3E-06 4.3E-11 81.0 12.2 36 172-214 4-39 (227)
71 2if2_A Dephospho-COA kinase; a 98.4 7.9E-07 2.7E-11 81.4 10.4 33 174-214 2-34 (204)
72 1m8p_A Sulfate adenylyltransfe 98.4 1.5E-06 5.1E-11 94.1 14.2 94 170-276 393-486 (573)
73 4edh_A DTMP kinase, thymidylat 98.4 1E-05 3.4E-10 76.8 18.0 94 171-266 4-99 (213)
74 1zuh_A Shikimate kinase; alpha 98.4 1.6E-06 5.6E-11 77.0 11.8 36 173-215 7-42 (168)
75 1uf9_A TT1252 protein; P-loop, 98.4 8.6E-07 2.9E-11 80.4 9.7 37 170-214 5-41 (203)
76 2h92_A Cytidylate kinase; ross 98.4 4.8E-06 1.6E-10 77.0 14.8 36 172-214 2-37 (219)
77 1q3t_A Cytidylate kinase; nucl 98.4 4.6E-06 1.6E-10 78.9 14.5 38 171-215 14-51 (236)
78 3ake_A Cytidylate kinase; CMP 98.4 2.1E-06 7.3E-11 78.1 11.8 34 175-215 4-37 (208)
79 3lv8_A DTMP kinase, thymidylat 98.4 1.6E-05 5.3E-10 77.0 18.2 29 170-198 24-52 (236)
80 1via_A Shikimate kinase; struc 98.4 1.2E-06 3.9E-11 78.7 9.5 34 175-215 6-39 (175)
81 2jaq_A Deoxyguanosine kinase; 98.4 1.4E-05 4.8E-10 72.1 16.7 24 175-198 2-25 (205)
82 2gks_A Bifunctional SAT/APS ki 98.4 1.4E-06 4.9E-11 93.6 11.6 91 171-275 370-460 (546)
83 1a7j_A Phosphoribulokinase; tr 98.4 6.6E-07 2.3E-11 88.6 7.9 43 172-216 4-46 (290)
84 1rz3_A Hypothetical protein rb 98.4 5.2E-06 1.8E-10 76.7 13.5 43 171-215 20-62 (201)
85 4tmk_A Protein (thymidylate ki 98.3 4.3E-05 1.5E-09 72.6 20.1 27 172-198 2-28 (213)
86 3tqc_A Pantothenate kinase; bi 98.3 4.4E-06 1.5E-10 84.5 13.8 46 170-215 89-134 (321)
87 3a00_A Guanylate kinase, GMP k 98.3 9.9E-08 3.4E-12 87.2 1.2 25 173-197 1-25 (186)
88 4e22_A Cytidylate kinase; P-lo 98.3 6.9E-06 2.4E-10 79.0 13.8 37 171-214 25-61 (252)
89 4hlc_A DTMP kinase, thymidylat 98.3 5.5E-05 1.9E-09 71.2 19.6 181 172-393 1-184 (205)
90 3c8u_A Fructokinase; YP_612366 98.3 1.7E-05 5.6E-10 73.6 14.8 42 171-214 20-61 (208)
91 3tau_A Guanylate kinase, GMP k 98.3 1.5E-07 5.1E-12 87.7 0.9 27 171-197 6-32 (208)
92 3gmt_A Adenylate kinase; ssgci 98.3 4.1E-06 1.4E-10 81.1 10.9 35 173-214 8-42 (230)
93 3hdt_A Putative kinase; struct 98.3 1.3E-05 4.6E-10 76.7 14.4 37 172-215 13-49 (223)
94 1ex7_A Guanylate kinase; subst 98.2 7.7E-07 2.6E-11 83.3 4.6 82 175-267 3-100 (186)
95 3fdi_A Uncharacterized protein 98.2 6.1E-06 2.1E-10 77.3 10.8 35 173-214 6-40 (201)
96 3v9p_A DTMP kinase, thymidylat 98.2 1.1E-05 3.9E-10 77.5 11.5 29 170-198 22-50 (227)
97 3ld9_A DTMP kinase, thymidylat 98.2 1.6E-05 5.4E-10 76.4 12.4 94 170-266 18-114 (223)
98 3a8t_A Adenylate isopentenyltr 98.1 2.3E-05 7.9E-10 80.0 13.4 37 171-214 38-74 (339)
99 3tr0_A Guanylate kinase, GMP k 98.1 1.5E-05 5.3E-10 72.3 10.7 27 171-197 5-31 (205)
100 1gtv_A TMK, thymidylate kinase 98.1 1.8E-06 6.1E-11 79.1 4.2 25 174-198 1-25 (214)
101 1sq5_A Pantothenate kinase; P- 98.1 2E-05 6.8E-10 78.1 12.0 46 170-215 77-122 (308)
102 2bbw_A Adenylate kinase 4, AK4 98.0 0.00017 5.9E-09 68.3 15.5 36 172-214 26-61 (246)
103 1kgd_A CASK, peripheral plasma 98.0 3.9E-06 1.3E-10 76.2 3.7 26 172-197 4-29 (180)
104 3nwj_A ATSK2; P loop, shikimat 97.9 3.2E-05 1.1E-09 75.2 10.2 35 173-214 48-82 (250)
105 2v54_A DTMP kinase, thymidylat 97.9 2.8E-05 9.5E-10 70.6 9.2 26 172-197 3-28 (204)
106 3crm_A TRNA delta(2)-isopenten 97.9 2E-05 6.7E-10 79.9 7.5 38 171-215 3-40 (323)
107 3hjn_A DTMP kinase, thymidylat 97.8 0.00061 2.1E-08 63.5 16.8 88 174-266 1-89 (197)
108 3exa_A TRNA delta(2)-isopenten 97.8 4E-05 1.4E-09 77.7 7.8 36 172-214 2-37 (322)
109 1s96_A Guanylate kinase, GMP k 97.7 6E-05 2.1E-09 71.6 7.4 28 170-197 13-40 (219)
110 3d3q_A TRNA delta(2)-isopenten 97.7 2.9E-05 9.9E-10 79.2 5.5 36 172-214 6-41 (340)
111 2vp4_A Deoxynucleoside kinase; 97.7 0.00037 1.3E-08 65.6 12.6 27 170-196 17-43 (230)
112 3asz_A Uridine kinase; cytidin 97.7 3.4E-05 1.1E-09 70.9 5.0 39 171-214 4-42 (211)
113 3cr8_A Sulfate adenylyltranfer 97.7 0.00021 7.3E-09 77.0 11.9 44 171-215 367-410 (552)
114 3ney_A 55 kDa erythrocyte memb 97.6 1E-05 3.5E-10 76.4 0.7 28 170-197 16-43 (197)
115 3foz_A TRNA delta(2)-isopenten 97.6 6.1E-05 2.1E-09 76.2 5.7 38 170-214 7-44 (316)
116 3eph_A TRNA isopentenyltransfe 97.4 0.00015 5.2E-09 75.7 6.8 35 173-214 2-36 (409)
117 2jeo_A Uridine-cytidine kinase 97.3 0.00011 3.9E-09 69.7 4.1 45 170-214 22-69 (245)
118 2j41_A Guanylate kinase; GMP, 97.3 0.00011 3.7E-09 66.6 3.6 27 171-197 4-30 (207)
119 1odf_A YGR205W, hypothetical 3 97.2 0.00039 1.3E-08 68.9 6.6 46 170-215 28-74 (290)
120 1vma_A Cell division protein F 97.2 0.00066 2.2E-08 67.9 7.7 45 170-216 101-145 (306)
121 1p5z_B DCK, deoxycytidine kina 97.1 0.00019 6.4E-09 68.8 3.0 40 156-197 9-48 (263)
122 3e70_C DPA, signal recognition 97.0 0.00054 1.9E-08 69.1 5.6 44 170-215 126-169 (328)
123 1zu4_A FTSY; GTPase, signal re 97.0 0.0023 7.9E-08 64.2 9.8 45 170-216 102-146 (320)
124 3aez_A Pantothenate kinase; tr 97.0 0.0007 2.4E-08 67.7 5.8 45 170-214 87-131 (312)
125 3b9q_A Chloroplast SRP recepto 97.0 0.0016 5.6E-08 64.7 8.2 44 170-215 97-140 (302)
126 3dm5_A SRP54, signal recogniti 97.0 0.002 6.8E-08 67.9 9.2 44 171-216 98-141 (443)
127 3tmk_A Thymidylate kinase; pho 96.9 0.004 1.4E-07 59.2 10.2 28 171-198 3-30 (216)
128 1g8f_A Sulfate adenylyltransfe 96.9 0.00062 2.1E-08 72.9 4.9 43 171-213 393-435 (511)
129 1lvg_A Guanylate kinase, GMP k 96.9 0.00041 1.4E-08 64.0 2.7 26 172-197 3-28 (198)
130 3kl4_A SRP54, signal recogniti 96.8 0.003 1E-07 66.3 9.1 44 171-216 95-138 (433)
131 2ocp_A DGK, deoxyguanosine kin 96.8 0.00081 2.8E-08 63.4 4.0 26 172-197 1-26 (241)
132 3lnc_A Guanylate kinase, GMP k 96.8 0.00041 1.4E-08 64.9 1.8 27 171-197 25-52 (231)
133 3t15_A Ribulose bisphosphate c 96.7 0.00071 2.4E-08 66.3 3.6 40 170-214 33-72 (293)
134 1rj9_A FTSY, signal recognitio 96.7 0.0014 4.8E-08 65.3 5.7 43 171-215 100-142 (304)
135 2og2_A Putative signal recogni 96.7 0.003 1E-07 64.7 8.2 44 170-215 154-197 (359)
136 1lv7_A FTSH; alpha/beta domain 96.7 0.0015 5.1E-08 61.8 5.3 37 173-214 45-81 (257)
137 2qz4_A Paraplegin; AAA+, SPG7, 96.7 0.0016 5.3E-08 61.1 5.4 39 171-214 37-75 (262)
138 3bos_A Putative DNA replicatio 96.7 0.0013 4.4E-08 60.1 4.4 41 173-215 52-92 (242)
139 1znw_A Guanylate kinase, GMP k 96.6 0.00099 3.4E-08 61.5 3.4 27 171-197 18-44 (207)
140 4b4t_L 26S protease subunit RP 96.6 0.0034 1.2E-07 66.0 7.8 39 171-214 213-251 (437)
141 2qmh_A HPR kinase/phosphorylas 96.6 0.0014 4.8E-08 62.5 4.3 35 172-214 33-67 (205)
142 2cvh_A DNA repair and recombin 96.6 0.0018 6E-08 59.0 4.9 38 171-213 18-55 (220)
143 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.0014 4.7E-08 59.8 4.0 41 172-214 22-62 (235)
144 3ec2_A DNA replication protein 96.6 0.001 3.5E-08 59.5 3.1 41 173-214 38-78 (180)
145 2dr3_A UPF0273 protein PH0284; 96.6 0.0018 6E-08 59.9 4.6 41 172-214 22-62 (247)
146 2ehv_A Hypothetical protein PH 96.6 0.001 3.5E-08 61.7 3.0 43 171-214 28-70 (251)
147 2yhs_A FTSY, cell division pro 96.6 0.0041 1.4E-07 66.5 8.0 44 170-215 290-333 (503)
148 4b4t_M 26S protease regulatory 96.5 0.0035 1.2E-07 65.8 7.4 39 171-214 213-251 (434)
149 1z6g_A Guanylate kinase; struc 96.5 0.001 3.5E-08 62.4 3.0 27 171-197 21-47 (218)
150 4b4t_K 26S protease regulatory 96.5 0.0041 1.4E-07 65.1 7.8 39 171-214 204-242 (428)
151 2x8a_A Nuclear valosin-contain 96.5 0.0018 6.1E-08 63.1 4.6 34 176-214 47-80 (274)
152 3b9p_A CG5977-PA, isoform A; A 96.5 0.0021 7.2E-08 61.9 5.0 38 172-214 53-90 (297)
153 2px0_A Flagellar biosynthesis 96.5 0.0023 7.9E-08 63.4 5.3 45 171-216 103-147 (296)
154 3h4m_A Proteasome-activating n 96.5 0.0021 7E-08 61.4 4.8 38 172-214 50-87 (285)
155 4b4t_J 26S protease regulatory 96.5 0.0044 1.5E-07 64.6 7.5 39 171-214 180-218 (405)
156 1svm_A Large T antigen; AAA+ f 96.5 0.0023 7.7E-08 65.9 5.2 28 170-197 166-193 (377)
157 1ye8_A Protein THEP1, hypothet 96.5 0.0014 4.7E-08 60.1 3.3 23 175-197 2-24 (178)
158 4a74_A DNA repair and recombin 96.4 0.0015 5E-08 59.9 3.3 42 172-213 24-69 (231)
159 1htw_A HI0065; nucleotide-bind 96.4 0.002 6.9E-08 58.2 4.1 27 171-197 31-57 (158)
160 1jbk_A CLPB protein; beta barr 96.4 0.0018 6.2E-08 56.3 3.6 25 173-197 43-67 (195)
161 3u61_B DNA polymerase accessor 96.4 0.0033 1.1E-07 61.3 5.6 39 171-214 46-84 (324)
162 3eie_A Vacuolar protein sortin 96.4 0.0062 2.1E-07 60.1 7.6 39 171-214 49-87 (322)
163 3tif_A Uncharacterized ABC tra 96.4 0.0017 5.9E-08 62.0 3.4 42 171-215 29-70 (235)
164 1c9k_A COBU, adenosylcobinamid 96.4 0.002 6.8E-08 60.1 3.7 33 175-213 1-33 (180)
165 2eyu_A Twitching motility prot 96.3 0.0022 7.4E-08 62.4 4.0 41 171-214 23-64 (261)
166 2w58_A DNAI, primosome compone 96.3 0.0023 7.7E-08 58.1 3.8 40 173-214 54-93 (202)
167 1ofh_A ATP-dependent HSL prote 96.3 0.0028 9.6E-08 60.6 4.6 38 172-214 49-86 (310)
168 4b4t_H 26S protease regulatory 96.3 0.0058 2E-07 64.8 7.3 39 171-214 241-279 (467)
169 2v3c_C SRP54, signal recogniti 96.3 0.0049 1.7E-07 64.4 6.7 44 171-216 97-140 (432)
170 3cf0_A Transitional endoplasmi 96.3 0.0019 6.7E-08 63.2 3.4 39 171-214 47-85 (301)
171 1n0w_A DNA repair protein RAD5 96.3 0.0034 1.2E-07 58.0 4.7 42 172-213 23-68 (243)
172 1mv5_A LMRA, multidrug resista 96.2 0.003 1E-07 60.5 4.2 41 171-214 26-66 (243)
173 4b4t_I 26S protease regulatory 96.2 0.0083 2.8E-07 63.1 7.9 39 171-214 214-252 (437)
174 3czq_A Putative polyphosphate 96.2 0.029 9.9E-07 56.4 11.5 156 171-383 84-245 (304)
175 2kjq_A DNAA-related protein; s 96.2 0.003 1E-07 56.1 3.9 42 172-215 35-76 (149)
176 1ixz_A ATP-dependent metallopr 96.2 0.003 1E-07 59.6 3.9 34 176-214 52-85 (254)
177 4fcw_A Chaperone protein CLPB; 96.1 0.0048 1.6E-07 59.4 5.2 42 173-216 47-88 (311)
178 1yrb_A ATP(GTP)binding protein 96.1 0.0071 2.4E-07 56.8 6.2 41 170-213 11-51 (262)
179 3kta_A Chromosome segregation 96.1 0.0028 9.7E-08 56.5 3.2 26 173-198 26-51 (182)
180 1njg_A DNA polymerase III subu 96.1 0.0033 1.1E-07 56.4 3.7 26 173-198 45-70 (250)
181 1in4_A RUVB, holliday junction 96.1 0.0043 1.5E-07 61.7 4.8 27 172-198 50-76 (334)
182 4g1u_C Hemin import ATP-bindin 96.1 0.0033 1.1E-07 61.4 3.9 42 171-215 35-76 (266)
183 2p65_A Hypothetical protein PF 96.1 0.0026 9E-08 55.5 2.9 25 173-197 43-67 (187)
184 1d2n_A N-ethylmaleimide-sensit 96.1 0.0054 1.8E-07 58.6 5.3 28 171-198 62-89 (272)
185 1xwi_A SKD1 protein; VPS4B, AA 96.1 0.0047 1.6E-07 61.4 5.0 40 171-214 43-82 (322)
186 1xjc_A MOBB protein homolog; s 96.1 0.0044 1.5E-07 57.1 4.4 25 173-197 4-28 (169)
187 2pcj_A ABC transporter, lipopr 96.1 0.0022 7.5E-08 60.8 2.4 41 171-214 28-68 (224)
188 2xxa_A Signal recognition part 96.1 0.0057 2E-07 63.9 5.8 45 170-216 97-142 (433)
189 1b0u_A Histidine permease; ABC 96.0 0.0031 1.1E-07 61.2 3.4 41 171-214 30-70 (262)
190 3syl_A Protein CBBX; photosynt 96.0 0.0058 2E-07 58.8 5.2 44 171-214 65-110 (309)
191 2cbz_A Multidrug resistance-as 96.0 0.0029 1E-07 60.5 3.0 27 171-197 29-55 (237)
192 3gfo_A Cobalt import ATP-bindi 96.0 0.0027 9.3E-08 62.4 2.7 41 171-214 32-72 (275)
193 2j37_W Signal recognition part 96.0 0.013 4.4E-07 62.6 8.0 44 171-216 99-142 (504)
194 3tqf_A HPR(Ser) kinase; transf 96.0 0.0052 1.8E-07 57.6 4.3 35 172-214 15-49 (181)
195 1g6h_A High-affinity branched- 95.9 0.0031 1.1E-07 60.9 2.9 41 171-214 31-71 (257)
196 2ixe_A Antigen peptide transpo 95.9 0.0037 1.2E-07 61.1 3.4 41 171-214 43-83 (271)
197 1nij_A Hypothetical protein YJ 95.9 0.0055 1.9E-07 60.9 4.6 23 174-196 5-27 (318)
198 2onk_A Molybdate/tungstate ABC 95.9 0.0036 1.2E-07 60.2 3.2 40 171-214 23-62 (240)
199 1sxj_C Activator 1 40 kDa subu 95.9 0.0065 2.2E-07 60.1 5.1 24 173-197 47-70 (340)
200 3vfd_A Spastin; ATPase, microt 95.9 0.0072 2.5E-07 61.2 5.6 38 172-214 147-184 (389)
201 2ff7_A Alpha-hemolysin translo 95.9 0.0033 1.1E-07 60.6 2.9 41 171-214 33-73 (247)
202 1np6_A Molybdopterin-guanine d 95.9 0.0045 1.5E-07 56.9 3.5 25 173-197 6-30 (174)
203 1ls1_A Signal recognition part 95.9 0.007 2.4E-07 59.8 5.1 42 172-215 97-138 (295)
204 2qp9_X Vacuolar protein sortin 95.9 0.0084 2.9E-07 60.3 5.8 38 172-214 83-120 (355)
205 1sxj_A Activator 1 95 kDa subu 95.9 0.019 6.5E-07 60.6 8.7 40 172-216 76-115 (516)
206 2zu0_C Probable ATP-dependent 95.9 0.0043 1.5E-07 60.4 3.5 43 171-214 44-86 (267)
207 1ji0_A ABC transporter; ATP bi 95.9 0.0032 1.1E-07 60.3 2.5 41 171-214 30-70 (240)
208 1iy2_A ATP-dependent metallopr 95.9 0.0052 1.8E-07 59.0 4.0 34 176-214 76-109 (278)
209 2pze_A Cystic fibrosis transme 95.8 0.0033 1.1E-07 59.8 2.5 37 171-210 32-68 (229)
210 3cf2_A TER ATPase, transitiona 95.8 0.009 3.1E-07 67.2 6.4 39 171-214 236-274 (806)
211 3d8b_A Fidgetin-like protein 1 95.8 0.0064 2.2E-07 61.1 4.7 39 171-214 115-153 (357)
212 2d2e_A SUFC protein; ABC-ATPas 95.8 0.0044 1.5E-07 59.6 3.4 41 171-214 27-69 (250)
213 1l8q_A Chromosomal replication 95.8 0.0037 1.3E-07 61.2 2.9 40 173-214 37-76 (324)
214 2olj_A Amino acid ABC transpor 95.8 0.0038 1.3E-07 60.9 3.0 41 171-214 48-88 (263)
215 1vpl_A ABC transporter, ATP-bi 95.8 0.0039 1.3E-07 60.5 3.0 41 171-214 39-79 (256)
216 1p9r_A General secretion pathw 95.8 0.0079 2.7E-07 62.6 5.4 40 172-214 166-205 (418)
217 1hqc_A RUVB; extended AAA-ATPa 95.8 0.012 4E-07 57.0 6.3 37 173-214 38-74 (324)
218 2ffh_A Protein (FFH); SRP54, s 95.8 0.0086 2.9E-07 62.6 5.7 43 172-216 97-139 (425)
219 2ghi_A Transport protein; mult 95.8 0.0041 1.4E-07 60.3 3.0 40 171-214 44-83 (260)
220 1cr0_A DNA primase/helicase; R 95.8 0.0049 1.7E-07 59.7 3.5 42 171-213 33-74 (296)
221 3n70_A Transport activator; si 95.8 0.0075 2.6E-07 52.6 4.4 36 176-214 27-62 (145)
222 1j8m_F SRP54, signal recogniti 95.8 0.006 2E-07 60.5 4.2 42 173-216 98-139 (297)
223 2yz2_A Putative ABC transporte 95.8 0.0042 1.4E-07 60.4 3.0 41 171-214 31-71 (266)
224 1dek_A Deoxynucleoside monopho 95.8 0.0065 2.2E-07 58.9 4.3 32 174-212 2-33 (241)
225 2chg_A Replication factor C sm 95.8 0.009 3.1E-07 53.1 4.9 22 176-197 41-62 (226)
226 3pfi_A Holliday junction ATP-d 95.8 0.0077 2.6E-07 59.0 4.9 37 173-214 55-91 (338)
227 3b85_A Phosphate starvation-in 95.7 0.0037 1.3E-07 58.8 2.4 24 173-196 22-45 (208)
228 3nh6_A ATP-binding cassette SU 95.7 0.0039 1.3E-07 62.4 2.7 43 171-216 78-120 (306)
229 3p32_A Probable GTPase RV1496/ 95.7 0.0096 3.3E-07 59.9 5.6 43 170-214 76-118 (355)
230 2v1u_A Cell division control p 95.7 0.009 3.1E-07 58.6 5.2 44 171-214 42-89 (387)
231 2gza_A Type IV secretion syste 95.7 0.0063 2.2E-07 61.7 4.3 35 173-210 175-209 (361)
232 1sgw_A Putative ABC transporte 95.7 0.0036 1.2E-07 59.3 2.2 41 171-214 33-73 (214)
233 2ihy_A ABC transporter, ATP-bi 95.7 0.0053 1.8E-07 60.4 3.5 41 171-214 45-85 (279)
234 2r62_A Cell division protease 95.7 0.0023 8E-08 60.6 0.8 37 173-214 44-80 (268)
235 2qi9_C Vitamin B12 import ATP- 95.7 0.0047 1.6E-07 59.7 2.8 40 171-214 24-63 (249)
236 3hr8_A Protein RECA; alpha and 95.6 0.009 3.1E-07 61.1 5.0 41 172-214 60-100 (356)
237 2f1r_A Molybdopterin-guanine d 95.6 0.0039 1.3E-07 57.1 2.0 24 174-197 3-26 (171)
238 2nq2_C Hypothetical ABC transp 95.6 0.0045 1.5E-07 59.9 2.5 27 171-197 29-55 (253)
239 3te6_A Regulatory protein SIR3 95.6 0.01 3.5E-07 59.7 5.1 46 170-215 42-92 (318)
240 1um8_A ATP-dependent CLP prote 95.6 0.0094 3.2E-07 59.8 4.8 37 173-214 72-108 (376)
241 2i3b_A HCR-ntpase, human cance 95.6 0.0057 1.9E-07 56.7 2.9 23 175-197 3-25 (189)
242 1f2t_A RAD50 ABC-ATPase; DNA d 95.6 0.0076 2.6E-07 53.5 3.6 25 173-197 23-47 (149)
243 2zts_A Putative uncharacterize 95.5 0.0071 2.4E-07 55.8 3.5 42 172-214 29-70 (251)
244 2zr9_A Protein RECA, recombina 95.5 0.0083 2.8E-07 60.8 4.2 41 172-214 60-100 (349)
245 2v9p_A Replication protein E1; 95.5 0.007 2.4E-07 60.6 3.5 27 171-197 124-150 (305)
246 3hws_A ATP-dependent CLP prote 95.5 0.01 3.5E-07 59.3 4.7 37 172-213 50-86 (363)
247 2ewv_A Twitching motility prot 95.5 0.0082 2.8E-07 61.2 4.0 27 171-197 134-160 (372)
248 2pt7_A CAG-ALFA; ATPase, prote 95.4 0.0077 2.6E-07 60.5 3.6 35 173-210 171-205 (330)
249 3jvv_A Twitching mobility prot 95.4 0.0088 3E-07 60.9 4.0 25 173-197 123-147 (356)
250 2orw_A Thymidine kinase; TMTK, 95.4 0.0085 2.9E-07 55.0 3.5 25 173-197 3-27 (184)
251 1nlf_A Regulatory protein REPA 95.4 0.0072 2.5E-07 58.2 3.2 42 172-214 29-79 (279)
252 2r2a_A Uncharacterized protein 95.4 0.0087 3E-07 56.1 3.6 45 171-215 3-51 (199)
253 1sxj_E Activator 1 40 kDa subu 95.4 0.0073 2.5E-07 59.3 3.2 26 171-197 35-60 (354)
254 1fnn_A CDC6P, cell division co 95.4 0.017 5.6E-07 56.9 5.7 38 175-214 46-84 (389)
255 3tui_C Methionine import ATP-b 95.4 0.0091 3.1E-07 61.4 3.9 42 171-215 52-93 (366)
256 2zan_A Vacuolar protein sortin 95.3 0.012 4.1E-07 61.2 4.7 39 172-214 166-204 (444)
257 2qby_A CDC6 homolog 1, cell di 95.3 0.011 3.7E-07 57.8 4.2 43 171-213 43-86 (386)
258 1tue_A Replication protein E1; 95.3 0.018 6.1E-07 55.2 5.5 26 173-198 58-83 (212)
259 3fvq_A Fe(3+) IONS import ATP- 95.3 0.0092 3.2E-07 61.1 3.8 41 171-214 28-68 (359)
260 2b8t_A Thymidine kinase; deoxy 95.3 0.013 4.3E-07 56.1 4.5 37 171-209 10-46 (223)
261 2bbs_A Cystic fibrosis transme 95.3 0.0076 2.6E-07 59.7 3.0 27 171-197 62-88 (290)
262 2bjv_A PSP operon transcriptio 95.3 0.016 5.3E-07 55.0 5.0 39 174-214 30-68 (265)
263 2ce7_A Cell division protein F 95.3 0.014 4.6E-07 62.0 5.0 38 172-214 48-85 (476)
264 2ga8_A Hypothetical 39.9 kDa p 95.3 0.013 4.6E-07 60.1 4.7 26 335-360 291-316 (359)
265 2pjz_A Hypothetical protein ST 95.3 0.0075 2.6E-07 58.8 2.7 39 171-214 29-67 (263)
266 2qby_B CDC6 homolog 3, cell di 95.2 0.014 4.7E-07 57.6 4.7 27 171-197 43-69 (384)
267 1jr3_A DNA polymerase III subu 95.2 0.018 6.1E-07 56.6 5.4 27 172-198 37-63 (373)
268 1g41_A Heat shock protein HSLU 95.2 0.012 4.3E-07 61.8 4.5 38 172-214 49-86 (444)
269 1lw7_A Transcriptional regulat 95.2 0.012 4.1E-07 59.2 4.2 25 173-197 170-194 (365)
270 3d31_A Sulfate/molybdate ABC t 95.2 0.0097 3.3E-07 60.6 3.4 41 171-214 24-64 (348)
271 3rlf_A Maltose/maltodextrin im 95.2 0.011 3.8E-07 61.0 3.9 41 171-214 27-67 (381)
272 3uk6_A RUVB-like 2; hexameric 95.2 0.01 3.4E-07 58.6 3.4 26 173-198 70-95 (368)
273 1u94_A RECA protein, recombina 95.2 0.013 4.3E-07 59.8 4.2 41 172-214 62-102 (356)
274 3ch4_B Pmkase, phosphomevalona 95.2 0.024 8.2E-07 53.8 5.8 28 171-198 9-36 (202)
275 2oap_1 GSPE-2, type II secreti 95.2 0.012 4E-07 62.8 4.1 40 172-214 259-299 (511)
276 3sop_A Neuronal-specific septi 95.2 0.0092 3.1E-07 58.2 3.0 23 175-197 4-26 (270)
277 2yyz_A Sugar ABC transporter, 95.1 0.012 4.1E-07 60.2 3.9 41 171-214 27-67 (359)
278 2it1_A 362AA long hypothetical 95.1 0.012 4.1E-07 60.2 3.9 41 171-214 27-67 (362)
279 1pzn_A RAD51, DNA repair and r 95.1 0.016 5.5E-07 58.5 4.8 44 171-214 129-176 (349)
280 2z43_A DNA repair and recombin 95.1 0.017 5.8E-07 57.3 4.8 42 172-213 106-151 (324)
281 1v5w_A DMC1, meiotic recombina 95.0 0.022 7.6E-07 57.1 5.4 43 171-213 120-166 (343)
282 1v43_A Sugar-binding transport 95.0 0.014 4.7E-07 60.0 3.9 41 171-214 35-75 (372)
283 1z47_A CYSA, putative ABC-tran 95.0 0.012 4.1E-07 60.1 3.4 41 171-214 39-79 (355)
284 3hu3_A Transitional endoplasmi 95.0 0.04 1.4E-06 58.4 7.5 39 171-214 236-274 (489)
285 2qm8_A GTPase/ATPase; G protei 95.0 0.019 6.5E-07 57.7 4.8 42 170-213 52-93 (337)
286 2wsm_A Hydrogenase expression/ 95.0 0.029 1E-06 51.1 5.7 40 172-214 29-68 (221)
287 3qks_A DNA double-strand break 95.0 0.014 4.8E-07 54.2 3.6 27 172-198 22-48 (203)
288 2dhr_A FTSH; AAA+ protein, hex 94.9 0.021 7.1E-07 60.9 5.2 37 173-214 64-100 (499)
289 1iqp_A RFCS; clamp loader, ext 94.9 0.028 9.6E-07 53.9 5.6 22 176-197 49-70 (327)
290 3b5x_A Lipid A export ATP-bind 94.9 0.017 5.9E-07 62.0 4.5 42 171-215 367-408 (582)
291 1ko7_A HPR kinase/phosphatase; 94.9 0.035 1.2E-06 55.9 6.5 83 117-214 94-177 (314)
292 1oxx_K GLCV, glucose, ABC tran 94.9 0.01 3.5E-07 60.4 2.5 41 171-214 29-69 (353)
293 2p67_A LAO/AO transport system 94.9 0.021 7.2E-07 57.2 4.7 42 171-214 54-95 (341)
294 3m6a_A ATP-dependent protease 94.8 0.019 6.6E-07 61.3 4.7 38 172-214 107-144 (543)
295 2c9o_A RUVB-like 1; hexameric 94.8 0.023 8E-07 58.9 5.0 40 172-214 62-101 (456)
296 3b60_A Lipid A export ATP-bind 94.7 0.016 5.4E-07 62.3 3.6 42 171-215 367-408 (582)
297 3zq6_A Putative arsenical pump 94.7 0.031 1.1E-06 55.5 5.5 40 172-213 13-52 (324)
298 2z4s_A Chromosomal replication 94.7 0.015 5E-07 60.5 3.2 42 173-214 130-171 (440)
299 1kjw_A Postsynaptic density pr 94.7 0.02 6.7E-07 56.9 4.0 94 158-267 92-202 (295)
300 2hf9_A Probable hydrogenase ni 94.7 0.033 1.1E-06 50.9 5.2 39 172-213 37-75 (226)
301 2www_A Methylmalonic aciduria 94.7 0.028 9.6E-07 56.7 5.1 41 172-214 73-113 (349)
302 1xp8_A RECA protein, recombina 94.6 0.021 7.1E-07 58.4 4.2 41 172-214 73-113 (366)
303 3bh0_A DNAB-like replicative h 94.6 0.028 9.7E-07 55.6 5.0 41 171-213 66-106 (315)
304 1g29_1 MALK, maltose transport 94.6 0.015 5E-07 59.7 3.0 41 171-214 27-67 (372)
305 2wjg_A FEOB, ferrous iron tran 94.6 0.022 7.7E-07 50.0 3.8 26 171-196 5-30 (188)
306 1tf7_A KAIC; homohexamer, hexa 94.6 0.021 7.1E-07 60.5 4.0 42 171-214 37-79 (525)
307 3gd7_A Fusion complex of cysti 94.5 0.018 6.3E-07 59.4 3.5 41 171-215 45-85 (390)
308 1oix_A RAS-related protein RAB 94.5 0.023 7.8E-07 51.1 3.6 25 173-197 29-53 (191)
309 1sxj_D Activator 1 41 kDa subu 94.5 0.019 6.3E-07 56.0 3.2 22 176-197 61-82 (353)
310 3ozx_A RNAse L inhibitor; ATP 94.5 0.02 7E-07 61.3 3.7 28 170-197 22-49 (538)
311 3qkt_A DNA double-strand break 94.5 0.022 7.6E-07 56.8 3.7 27 172-198 22-48 (339)
312 1pui_A ENGB, probable GTP-bind 94.4 0.014 4.8E-07 52.6 2.1 26 170-195 23-48 (210)
313 2r44_A Uncharacterized protein 94.4 0.024 8.2E-07 55.5 3.9 32 175-211 48-79 (331)
314 1ypw_A Transitional endoplasmi 94.4 0.017 5.9E-07 64.6 3.2 39 171-214 236-274 (806)
315 2fna_A Conserved hypothetical 94.4 0.034 1.1E-06 53.7 4.9 35 175-214 32-66 (357)
316 4a82_A Cystic fibrosis transme 94.4 0.013 4.3E-07 63.0 2.0 43 171-216 365-407 (578)
317 3czp_A Putative polyphosphate 94.4 0.41 1.4E-05 51.0 13.6 157 171-383 298-459 (500)
318 1xx6_A Thymidine kinase; NESG, 94.4 0.03 1E-06 52.2 4.3 38 171-210 6-43 (191)
319 2f9l_A RAB11B, member RAS onco 94.4 0.021 7.2E-07 51.4 3.2 24 173-196 5-28 (199)
320 2i1q_A DNA repair and recombin 94.4 0.035 1.2E-06 54.5 5.0 25 172-196 97-121 (322)
321 3iqw_A Tail-anchored protein t 94.4 0.044 1.5E-06 55.2 5.7 42 170-213 13-54 (334)
322 3ug7_A Arsenical pump-driving 94.3 0.037 1.3E-06 55.7 5.1 42 170-213 23-64 (349)
323 1knx_A Probable HPR(Ser) kinas 94.3 0.027 9.2E-07 56.8 4.0 85 115-214 95-180 (312)
324 2wji_A Ferrous iron transport 94.3 0.027 9.1E-07 49.2 3.5 24 173-196 3-26 (165)
325 3qf4_B Uncharacterized ABC tra 94.3 0.017 5.9E-07 62.3 2.7 43 171-216 379-421 (598)
326 2yl4_A ATP-binding cassette SU 94.2 0.017 5.7E-07 62.2 2.5 41 172-215 369-409 (595)
327 3lda_A DNA repair protein RAD5 94.2 0.039 1.3E-06 57.1 5.1 42 172-213 177-222 (400)
328 3qf7_A RAD50; ABC-ATPase, ATPa 94.2 0.025 8.5E-07 57.4 3.6 24 173-196 23-46 (365)
329 4dzz_A Plasmid partitioning pr 94.2 0.029 1E-06 50.4 3.6 40 173-214 2-41 (206)
330 3pvs_A Replication-associated 94.2 0.031 1.1E-06 58.4 4.4 25 174-198 51-75 (447)
331 3ea0_A ATPase, para family; al 94.2 0.055 1.9E-06 50.0 5.6 41 172-214 4-45 (245)
332 3end_A Light-independent proto 94.2 0.037 1.3E-06 53.8 4.6 42 171-214 39-80 (307)
333 3co5_A Putative two-component 94.2 0.014 4.6E-07 50.9 1.3 22 176-197 30-51 (143)
334 3czp_A Putative polyphosphate 94.2 0.29 9.8E-06 52.3 11.7 158 170-383 40-202 (500)
335 2orv_A Thymidine kinase; TP4A 94.1 0.047 1.6E-06 53.0 5.2 39 170-210 16-54 (234)
336 2chq_A Replication factor C sm 94.1 0.029 9.8E-07 53.6 3.6 22 176-197 41-62 (319)
337 2npi_A Protein CLP1; CLP1-PCF1 94.1 0.021 7.1E-07 60.1 2.8 26 172-197 137-162 (460)
338 3qf4_A ABC transporter, ATP-bi 94.1 0.022 7.5E-07 61.4 3.0 42 172-216 368-409 (587)
339 1yqt_A RNAse L inhibitor; ATP- 94.1 0.024 8.4E-07 60.6 3.4 27 171-197 45-71 (538)
340 4ag6_A VIRB4 ATPase, type IV s 94.1 0.042 1.4E-06 55.5 4.9 37 174-212 36-72 (392)
341 2woo_A ATPase GET3; tail-ancho 94.0 0.051 1.8E-06 54.1 5.4 42 171-214 17-58 (329)
342 2yv5_A YJEQ protein; hydrolase 94.0 0.028 9.6E-07 55.4 3.4 24 173-197 165-188 (302)
343 1sxj_B Activator 1 37 kDa subu 94.0 0.033 1.1E-06 53.3 3.7 24 173-197 43-66 (323)
344 2fn4_A P23, RAS-related protei 93.9 0.038 1.3E-06 47.7 3.8 26 171-196 7-32 (181)
345 2ce2_X GTPase HRAS; signaling 93.9 0.037 1.3E-06 46.7 3.5 24 174-197 4-27 (166)
346 3cio_A ETK, tyrosine-protein k 93.9 0.049 1.7E-06 53.6 4.9 43 171-215 102-145 (299)
347 1ojl_A Transcriptional regulat 93.8 0.042 1.4E-06 54.1 4.3 41 173-215 25-65 (304)
348 3bfv_A CAPA1, CAPB2, membrane 93.8 0.054 1.8E-06 52.6 5.0 42 172-215 81-123 (271)
349 2lkc_A Translation initiation 93.8 0.043 1.5E-06 47.5 3.8 27 170-196 5-31 (178)
350 1g8p_A Magnesium-chelatase 38 93.8 0.019 6.5E-07 56.0 1.7 22 176-197 48-69 (350)
351 1nrj_B SR-beta, signal recogni 93.8 0.039 1.3E-06 50.0 3.6 27 171-197 10-36 (218)
352 2j9r_A Thymidine kinase; TK1, 93.7 0.066 2.3E-06 51.2 5.2 38 171-210 26-63 (214)
353 2qag_B Septin-6, protein NEDD5 93.7 0.029 9.9E-07 58.8 2.9 26 171-196 38-65 (427)
354 2dyk_A GTP-binding protein; GT 93.7 0.035 1.2E-06 47.1 3.0 21 176-196 4-24 (161)
355 1yqt_A RNAse L inhibitor; ATP- 93.7 0.032 1.1E-06 59.6 3.3 26 172-197 311-336 (538)
356 1tq4_A IIGP1, interferon-induc 93.6 0.038 1.3E-06 57.5 3.7 25 172-196 68-92 (413)
357 1z2a_A RAS-related protein RAB 93.6 0.045 1.5E-06 46.7 3.5 25 172-196 4-28 (168)
358 1kao_A RAP2A; GTP-binding prot 93.6 0.048 1.6E-06 46.2 3.6 25 173-197 3-27 (167)
359 3j16_B RLI1P; ribosome recycli 93.5 0.035 1.2E-06 60.5 3.4 27 171-197 101-127 (608)
360 2qen_A Walker-type ATPase; unk 93.5 0.058 2E-06 52.0 4.6 34 174-214 32-65 (350)
361 1ky3_A GTP-binding protein YPT 93.5 0.045 1.5E-06 47.3 3.4 26 171-196 6-31 (182)
362 3bk7_A ABC transporter ATP-bin 93.5 0.036 1.2E-06 60.3 3.3 26 172-197 381-406 (607)
363 1p6x_A Thymidine kinase; P-loo 93.5 0.032 1.1E-06 56.6 2.8 28 171-198 5-32 (334)
364 2qgz_A Helicase loader, putati 93.5 0.042 1.4E-06 54.4 3.5 41 173-214 152-192 (308)
365 4a1f_A DNAB helicase, replicat 93.5 0.055 1.9E-06 54.9 4.4 42 171-214 44-85 (338)
366 1upt_A ARL1, ADP-ribosylation 93.4 0.06 2E-06 46.1 4.1 26 171-196 5-30 (171)
367 1e69_A Chromosome segregation 93.4 0.029 9.9E-07 55.5 2.3 23 173-195 24-46 (322)
368 1u8z_A RAS-related protein RAL 93.4 0.054 1.8E-06 45.9 3.7 24 173-196 4-27 (168)
369 3tvt_A Disks large 1 tumor sup 93.4 0.039 1.3E-06 54.9 3.2 94 158-267 87-197 (292)
370 4aby_A DNA repair protein RECN 93.4 0.019 6.4E-07 58.0 0.9 23 175-197 62-84 (415)
371 2ged_A SR-beta, signal recogni 93.4 0.049 1.7E-06 48.1 3.6 27 171-197 46-72 (193)
372 2q6t_A DNAB replication FORK h 93.4 0.071 2.4E-06 55.2 5.3 42 171-213 198-239 (444)
373 1ek0_A Protein (GTP-binding pr 93.4 0.043 1.5E-06 46.8 3.1 24 174-197 4-27 (170)
374 3io5_A Recombination and repai 93.4 0.058 2E-06 54.9 4.5 39 175-213 30-68 (333)
375 2gj8_A MNME, tRNA modification 93.4 0.05 1.7E-06 48.0 3.6 24 173-196 4-27 (172)
376 3ozx_A RNAse L inhibitor; ATP 93.4 0.03 1E-06 60.0 2.5 27 171-197 292-318 (538)
377 3kjh_A CO dehydrogenase/acetyl 93.4 0.056 1.9E-06 49.7 4.0 37 176-214 3-39 (254)
378 2r8r_A Sensor protein; KDPD, P 93.4 0.081 2.8E-06 51.1 5.2 40 173-214 6-45 (228)
379 1wb9_A DNA mismatch repair pro 93.3 0.04 1.4E-06 62.0 3.4 25 171-195 605-629 (800)
380 1w1w_A Structural maintenance 93.3 0.04 1.4E-06 56.6 3.2 26 172-197 25-50 (430)
381 1q57_A DNA primase/helicase; d 93.3 0.065 2.2E-06 56.2 4.9 42 171-214 240-282 (503)
382 3euj_A Chromosome partition pr 93.3 0.04 1.4E-06 58.6 3.2 24 174-197 30-53 (483)
383 3auy_A DNA double-strand break 93.3 0.046 1.6E-06 55.2 3.5 25 171-195 23-47 (371)
384 2hxs_A RAB-26, RAS-related pro 93.3 0.06 2.1E-06 46.5 3.9 26 171-196 4-29 (178)
385 3bk7_A ABC transporter ATP-bin 93.3 0.035 1.2E-06 60.4 2.8 27 171-197 115-141 (607)
386 2rcn_A Probable GTPase ENGC; Y 93.3 0.042 1.4E-06 56.3 3.2 25 173-197 215-239 (358)
387 2r6a_A DNAB helicase, replicat 93.3 0.048 1.6E-06 56.6 3.7 43 171-214 201-243 (454)
388 1z0j_A RAB-22, RAS-related pro 93.2 0.046 1.6E-06 46.7 3.0 25 173-197 6-30 (170)
389 1ihu_A Arsenical pump-driving 93.2 0.062 2.1E-06 57.4 4.7 41 171-213 6-46 (589)
390 3io3_A DEHA2D07832P; chaperone 93.2 0.082 2.8E-06 53.6 5.3 41 171-213 16-58 (348)
391 3tkl_A RAS-related protein RAB 93.2 0.052 1.8E-06 47.9 3.4 27 171-197 14-40 (196)
392 3rhf_A Putative polyphosphate 93.2 0.7 2.4E-05 46.1 11.9 129 171-355 73-202 (289)
393 3clv_A RAB5 protein, putative; 93.2 0.07 2.4E-06 46.6 4.2 27 171-197 5-31 (208)
394 1z6t_A APAF-1, apoptotic prote 93.2 0.33 1.1E-05 51.0 10.1 24 172-195 146-169 (591)
395 2erx_A GTP-binding protein DI- 93.2 0.047 1.6E-06 46.6 3.0 23 174-196 4-26 (172)
396 3bgw_A DNAB-like replicative h 93.2 0.059 2E-06 56.3 4.3 42 171-214 195-236 (444)
397 2vhj_A Ntpase P4, P4; non- hyd 93.2 0.055 1.9E-06 55.0 3.9 34 173-211 123-156 (331)
398 1a5t_A Delta prime, HOLB; zinc 93.2 0.054 1.8E-06 53.7 3.8 29 170-198 21-49 (334)
399 1u0l_A Probable GTPase ENGC; p 93.2 0.043 1.5E-06 53.9 3.1 25 173-197 169-193 (301)
400 2woj_A ATPase GET3; tail-ancho 93.2 0.087 3E-06 53.3 5.4 41 171-213 16-58 (354)
401 1g16_A RAS-related protein SEC 93.2 0.05 1.7E-06 46.4 3.1 24 173-196 3-26 (170)
402 3k9g_A PF-32 protein; ssgcid, 93.2 0.066 2.2E-06 50.7 4.2 41 171-214 26-66 (267)
403 2zej_A Dardarin, leucine-rich 93.1 0.044 1.5E-06 48.6 2.8 21 175-195 4-24 (184)
404 1svi_A GTP-binding protein YSX 93.1 0.059 2E-06 47.6 3.6 25 172-196 22-46 (195)
405 1g3q_A MIND ATPase, cell divis 93.1 0.072 2.5E-06 49.1 4.4 40 173-214 3-42 (237)
406 1cp2_A CP2, nitrogenase iron p 93.1 0.082 2.8E-06 49.9 4.8 39 175-215 3-41 (269)
407 1wms_A RAB-9, RAB9, RAS-relate 93.1 0.049 1.7E-06 47.1 3.0 24 173-196 7-30 (177)
408 3pxi_A Negative regulator of g 93.1 0.076 2.6E-06 58.5 5.3 43 171-215 518-561 (758)
409 3j16_B RLI1P; ribosome recycli 93.1 0.044 1.5E-06 59.7 3.2 24 174-197 379-402 (608)
410 1z08_A RAS-related protein RAB 93.1 0.051 1.7E-06 46.5 3.0 24 173-196 6-29 (170)
411 1w5s_A Origin recognition comp 93.0 0.05 1.7E-06 54.0 3.3 26 172-197 49-76 (412)
412 3con_A GTPase NRAS; structural 93.0 0.051 1.7E-06 47.9 3.1 25 172-196 20-44 (190)
413 2h17_A ADP-ribosylation factor 93.0 0.056 1.9E-06 47.6 3.3 27 170-196 18-44 (181)
414 2ph1_A Nucleotide-binding prot 92.9 0.091 3.1E-06 49.9 4.9 42 172-215 18-59 (262)
415 1ewq_A DNA mismatch repair pro 92.9 0.046 1.6E-06 61.1 3.2 23 173-195 576-598 (765)
416 3kkq_A RAS-related protein M-R 92.9 0.071 2.4E-06 46.5 3.8 27 171-197 16-42 (183)
417 3q9l_A Septum site-determining 92.9 0.076 2.6E-06 49.5 4.2 40 173-214 3-42 (260)
418 1c1y_A RAS-related protein RAP 92.9 0.067 2.3E-06 45.5 3.5 24 173-196 3-26 (167)
419 1hyq_A MIND, cell division inh 92.8 0.087 3E-06 49.5 4.6 40 173-214 3-42 (263)
420 2o5v_A DNA replication and rep 92.8 0.062 2.1E-06 54.8 3.7 23 173-195 26-48 (359)
421 3q72_A GTP-binding protein RAD 92.8 0.054 1.9E-06 46.3 2.8 21 175-195 4-24 (166)
422 1r2q_A RAS-related protein RAB 92.8 0.063 2.1E-06 45.7 3.2 24 173-196 6-29 (170)
423 2xtp_A GTPase IMAP family memb 92.8 0.068 2.3E-06 50.4 3.7 27 170-196 19-45 (260)
424 2nzj_A GTP-binding protein REM 92.8 0.07 2.4E-06 45.9 3.5 24 173-196 4-27 (175)
425 3q85_A GTP-binding protein REM 92.7 0.06 2.1E-06 46.1 3.0 21 175-195 4-24 (169)
426 1z0f_A RAB14, member RAS oncog 92.7 0.061 2.1E-06 46.3 3.1 25 173-197 15-39 (179)
427 3bc1_A RAS-related protein RAB 92.7 0.063 2.2E-06 46.8 3.2 26 171-196 9-34 (195)
428 4dsu_A GTPase KRAS, isoform 2B 92.7 0.061 2.1E-06 46.9 3.0 25 173-197 4-28 (189)
429 3cf2_A TER ATPase, transitiona 92.6 0.067 2.3E-06 60.2 4.0 28 171-198 509-536 (806)
430 1tf7_A KAIC; homohexamer, hexa 92.6 0.058 2E-06 57.0 3.3 41 171-213 279-319 (525)
431 3tw8_B RAS-related protein RAB 92.6 0.06 2E-06 46.5 2.8 25 172-196 8-32 (181)
432 2y8e_A RAB-protein 6, GH09086P 92.5 0.065 2.2E-06 46.2 3.0 24 173-196 14-37 (179)
433 1moz_A ARL1, ADP-ribosylation 92.5 0.059 2E-06 46.9 2.8 25 171-195 16-40 (183)
434 2obl_A ESCN; ATPase, hydrolase 92.5 0.066 2.3E-06 54.2 3.5 27 171-197 69-95 (347)
435 1w4r_A Thymidine kinase; type 92.5 0.083 2.8E-06 49.8 3.9 41 170-212 17-57 (195)
436 1fzq_A ADP-ribosylation factor 92.5 0.075 2.6E-06 47.1 3.4 26 171-196 14-39 (181)
437 3thx_A DNA mismatch repair pro 92.5 0.059 2E-06 61.6 3.4 22 172-193 661-682 (934)
438 3thx_B DNA mismatch repair pro 92.5 0.05 1.7E-06 62.1 2.7 23 172-194 672-694 (918)
439 2bme_A RAB4A, RAS-related prot 92.4 0.069 2.3E-06 46.7 3.0 26 172-197 9-34 (186)
440 1r8s_A ADP-ribosylation factor 92.4 0.076 2.6E-06 45.3 3.3 22 176-197 3-24 (164)
441 2qnr_A Septin-2, protein NEDD5 92.4 0.055 1.9E-06 53.3 2.7 22 174-195 19-40 (301)
442 1vg8_A RAS-related protein RAB 92.4 0.078 2.7E-06 47.3 3.4 27 171-197 6-32 (207)
443 3lxx_A GTPase IMAP family memb 92.4 0.073 2.5E-06 49.6 3.3 28 170-197 26-53 (239)
444 2cxx_A Probable GTP-binding pr 92.4 0.068 2.3E-06 46.7 2.9 21 176-196 4-24 (190)
445 3pqc_A Probable GTP-binding pr 92.4 0.089 3E-06 46.1 3.7 23 174-196 24-46 (195)
446 1r6b_X CLPA protein; AAA+, N-t 92.4 0.11 3.9E-06 56.9 5.3 37 174-215 489-525 (758)
447 1of1_A Thymidine kinase; trans 92.3 0.052 1.8E-06 56.0 2.4 28 171-198 47-74 (376)
448 2a9k_A RAS-related protein RAL 92.3 0.083 2.8E-06 45.8 3.4 25 172-196 17-41 (187)
449 3la6_A Tyrosine-protein kinase 92.3 0.16 5.4E-06 49.8 5.8 41 173-215 93-133 (286)
450 1e2k_A Thymidine kinase; trans 92.3 0.045 1.5E-06 55.5 1.9 26 172-197 3-28 (331)
451 2efe_B Small GTP-binding prote 92.3 0.073 2.5E-06 46.2 3.0 25 172-196 11-35 (181)
452 1t9h_A YLOQ, probable GTPase E 92.3 0.035 1.2E-06 55.5 1.1 25 172-196 172-196 (307)
453 4f4c_A Multidrug resistance pr 92.2 0.067 2.3E-06 63.1 3.5 42 172-216 443-484 (1321)
454 2qu8_A Putative nucleolar GTP- 92.2 0.11 3.6E-06 47.9 4.2 26 171-196 27-52 (228)
455 2bov_A RAla, RAS-related prote 92.2 0.095 3.3E-06 46.5 3.7 26 172-197 13-38 (206)
456 2afh_E Nitrogenase iron protei 92.2 0.1 3.6E-06 50.0 4.3 39 175-215 4-42 (289)
457 3k1j_A LON protease, ATP-depen 92.2 0.067 2.3E-06 57.6 3.2 25 174-198 61-85 (604)
458 3cwq_A Para family chromosome 92.2 0.14 4.7E-06 47.4 4.9 38 174-214 2-39 (209)
459 1m2o_B GTP-binding protein SAR 92.2 0.082 2.8E-06 47.3 3.3 26 171-196 21-46 (190)
460 2g6b_A RAS-related protein RAB 92.2 0.079 2.7E-06 45.9 3.1 27 171-197 8-34 (180)
461 2e87_A Hypothetical protein PH 92.2 0.18 6.2E-06 50.5 6.1 26 171-196 165-190 (357)
462 2gf0_A GTP-binding protein DI- 92.1 0.11 3.9E-06 45.7 4.1 26 171-196 6-31 (199)
463 2iw3_A Elongation factor 3A; a 92.1 0.07 2.4E-06 61.3 3.4 25 171-195 459-483 (986)
464 1mh1_A RAC1; GTP-binding, GTPa 92.1 0.081 2.8E-06 45.9 3.1 24 173-196 5-28 (186)
465 2atv_A RERG, RAS-like estrogen 92.1 0.1 3.5E-06 46.5 3.8 36 159-196 16-51 (196)
466 2o8b_B DNA mismatch repair pro 92.0 0.069 2.3E-06 61.6 3.2 21 173-193 789-809 (1022)
467 1ypw_A Transitional endoplasmi 92.0 0.037 1.3E-06 62.0 0.9 38 172-214 510-547 (806)
468 1qhl_A Protein (cell division 92.0 0.029 9.9E-07 53.7 0.1 25 174-198 28-52 (227)
469 1zcb_A G alpha I/13; GTP-bindi 92.0 0.091 3.1E-06 53.5 3.7 25 171-195 31-55 (362)
470 1wcv_1 SOJ, segregation protei 92.0 0.087 3E-06 49.8 3.4 42 171-214 5-46 (257)
471 3bwd_D RAC-like GTP-binding pr 91.9 0.1 3.4E-06 45.3 3.4 26 171-196 6-31 (182)
472 2oil_A CATX-8, RAS-related pro 91.9 0.088 3E-06 46.6 3.2 25 173-197 25-49 (193)
473 3g5u_A MCG1178, multidrug resi 91.9 0.068 2.3E-06 62.8 3.0 41 172-215 415-455 (1284)
474 3t5g_A GTP-binding protein RHE 91.9 0.077 2.6E-06 46.2 2.7 25 172-196 5-29 (181)
475 2dpy_A FLII, flagellum-specifi 91.8 0.086 2.9E-06 55.1 3.4 27 171-197 155-181 (438)
476 1osn_A Thymidine kinase, VZV-T 91.8 0.054 1.8E-06 55.2 1.8 28 171-198 10-38 (341)
477 3t1o_A Gliding protein MGLA; G 91.8 0.096 3.3E-06 45.8 3.2 25 173-197 14-38 (198)
478 1ksh_A ARF-like protein 2; sma 91.7 0.11 3.8E-06 45.5 3.6 26 171-196 16-41 (186)
479 1qvr_A CLPB protein; coiled co 91.7 0.13 4.5E-06 57.6 5.0 41 174-216 589-629 (854)
480 1u0j_A DNA replication protein 91.7 0.1 3.5E-06 51.4 3.6 25 173-197 104-128 (267)
481 1h65_A Chloroplast outer envel 91.7 0.26 8.8E-06 47.0 6.4 25 172-196 38-62 (270)
482 1z06_A RAS-related protein RAB 91.6 0.11 3.8E-06 45.8 3.5 26 171-196 18-43 (189)
483 1m7b_A RND3/RHOE small GTP-bin 91.6 0.11 3.7E-06 45.8 3.4 26 172-197 6-31 (184)
484 3pxg_A Negative regulator of g 91.6 0.095 3.3E-06 54.7 3.5 23 175-197 203-225 (468)
485 3nbx_X ATPase RAVA; AAA+ ATPas 91.6 0.07 2.4E-06 56.8 2.4 23 175-197 43-65 (500)
486 3ux8_A Excinuclease ABC, A sub 91.6 0.05 1.7E-06 59.3 1.3 22 172-193 347-368 (670)
487 1zj6_A ADP-ribosylation factor 91.6 0.13 4.6E-06 45.2 3.9 26 171-196 14-39 (187)
488 3fkq_A NTRC-like two-domain pr 91.5 0.34 1.2E-05 48.8 7.3 41 172-214 143-183 (373)
489 2gno_A DNA polymerase III, gam 91.5 0.21 7.3E-06 49.4 5.7 40 173-212 18-58 (305)
490 2xkx_A Disks large homolog 4; 91.5 0.47 1.6E-05 52.4 9.0 94 158-267 518-628 (721)
491 3ihw_A Centg3; RAS, centaurin, 91.5 0.13 4.5E-06 45.8 3.8 27 171-197 18-44 (184)
492 3szr_A Interferon-induced GTP- 91.4 0.065 2.2E-06 58.1 2.1 22 176-197 48-69 (608)
493 1x3s_A RAS-related protein RAB 91.4 0.1 3.6E-06 45.7 3.1 25 173-197 15-39 (195)
494 3k53_A Ferrous iron transport 91.4 0.13 4.3E-06 49.3 3.8 23 174-196 4-26 (271)
495 2gf9_A RAS-related protein RAB 91.4 0.1 3.6E-06 46.0 3.1 24 173-196 22-45 (189)
496 3upu_A ATP-dependent DNA helic 91.4 0.1 3.5E-06 54.1 3.4 23 175-197 47-69 (459)
497 2p5s_A RAS and EF-hand domain 91.4 0.13 4.3E-06 46.1 3.6 27 170-196 25-51 (199)
498 1f6b_A SAR1; gtpases, N-termin 91.4 0.12 4.1E-06 46.6 3.5 25 171-195 23-47 (198)
499 1zd9_A ADP-ribosylation factor 91.4 0.12 3.9E-06 45.9 3.3 26 171-196 20-45 (188)
500 1zbd_A Rabphilin-3A; G protein 91.3 0.11 3.6E-06 46.4 3.0 25 173-197 8-32 (203)
No 1
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.73 E-value=1.6e-16 Score=157.18 Aligned_cols=169 Identities=20% Similarity=0.272 Sum_probs=122.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHH
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 249 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~ 249 (477)
.++|.+|+|+|+|||||||+++.|++.++ .+..+||+|.++...+-+..+... .+ ....+........+..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~-----~~~~~Is~D~~R~~~~~~~~~~~~-~~---~~a~~~~~~~~~~~~~ 100 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ-----GNVIVIDNDTFKQQHPNFDELVKL-YE---KDVVKHVTPYSNRMTE 100 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT-----TCCEEECTHHHHTTSTTHHHHHHH-HG---GGCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEechHhHHhchhhHHHHHH-cc---chhhhhhhHHHHHHHH
Confidence 56799999999999999999999998862 357999999986432222111110 00 0011111122334456
Q ss_pred HHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccC
Q 011773 250 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR 329 (477)
Q Consensus 250 ~li~~aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~ 329 (477)
..+..+++.|.+||+|+++.....+..+.+.+ ..
T Consensus 101 ~~v~~~l~~g~~vIld~~~~~~~~~~~~~~~~----------------------------------------------~~ 134 (287)
T 1gvn_B 101 AIISRLSDQGYNLVIEGTGRTTDVPIQTATML----------------------------------------------QA 134 (287)
T ss_dssp HHHHHHHHHTCCEEECCCCCCSHHHHHHHHHH----------------------------------------------HT
T ss_pred HHHHHHHhcCCeEEEECCCCCHHHHHHHHHHH----------------------------------------------Hh
Confidence 77888899999999999999876555544332 34
Q ss_pred CCceEEEEEEecCHHHH----HHHHHHhhhcc---ccccchhhhhhHHHHHHHhHHHh--hccCceEEEEecC
Q 011773 330 KPYRIELVGVVCDAYLA----VVRGIRRAIMM---KRAVRVNSQLKSHKRFANAFRNY--CELVDNARLYCTN 393 (477)
Q Consensus 330 ~pY~I~lv~V~~d~ela----v~Rv~~R~~~g---Gr~Vp~~~ql~~~~rf~~~~~~y--~~lvD~a~lydnn 393 (477)
.||.+.++++.+|++++ +.|...|...+ ||.+|.+.+...++++..++... ...+|.+++||+.
T Consensus 135 ~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~~~g~l~~R~~~~e~~~~i~~rl~~a~~el~~~~~~d~v~v~d~~ 207 (287)
T 1gvn_B 135 KGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSDIRLYNRE 207 (287)
T ss_dssp TTCEEEEEEECCCHHHHHHHHHHHHHHHHHHCTTTCCCCCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEECTT
T ss_pred CCCcEEEEEEECCHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCC
Confidence 57778888899999999 88888887754 58898888888899998888654 5779999999974
No 2
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.53 E-value=2.5e-13 Score=130.92 Aligned_cols=168 Identities=21% Similarity=0.329 Sum_probs=105.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHH
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 249 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~ 249 (477)
.++|.+|+|+|+|||||||+++.|+..++ .+.++++.|.++...+-+..+... .+... .+........++.
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~-----~~~~~~~~D~~r~~~~~~~~i~~~-~g~~~---~~~~~~~~~~~~~ 99 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ-----GNIVIIDGDSFRSQHPHYLELQQE-YGKDS---VEYTKDFAGKMVE 99 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT-----TCCEEECGGGGGTTSTTHHHHHTT-CSSTT---HHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC-----CCcEEEecHHHHHhchhHHHHHHH-cCchH---HHHhhHHHHHHHH
Confidence 56789999999999999999999999874 357899999996543222223221 11111 1111111334456
Q ss_pred HHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccC
Q 011773 250 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR 329 (477)
Q Consensus 250 ~li~~aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~ 329 (477)
.++..+++.|.++|+|+++.....+..+.+. ...
T Consensus 100 ~~~~~~~~~g~~vVid~~~~~~~~~~~~~~~----------------------------------------------l~~ 133 (253)
T 2p5t_B 100 SLVTKLSSLGYNLLIEGTLRTVDVPKKTAQL----------------------------------------------LKN 133 (253)
T ss_dssp HHHHHHHHTTCCEEEECCTTSSHHHHHHHHH----------------------------------------------HHH
T ss_pred HHHHHHHhcCCCEEEeCCCCCHHHHHHHHHH----------------------------------------------HHH
Confidence 6777788899999999999876554444322 234
Q ss_pred CCceEEEEEEecCHHHHHHHHHHhhhc-------cccccchhhhhhHHHHHHHhHH--HhhccCceEEEEec
Q 011773 330 KPYRIELVGVVCDAYLAVVRGIRRAIM-------MKRAVRVNSQLKSHKRFANAFR--NYCELVDNARLYCT 392 (477)
Q Consensus 330 ~pY~I~lv~V~~d~elav~Rv~~R~~~-------gGr~Vp~~~ql~~~~rf~~~~~--~y~~lvD~a~lydn 392 (477)
.|+.+.++++.+|++++.+|...|... .|+.+|.......+..+.-... .....+|.+..|..
T Consensus 134 ~g~~v~lv~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~t~~~~~~~~~~~I~~~l~ 205 (253)
T 2p5t_B 134 KGYEVQLALIATKPELSYLSTLIRYEELYIINPNQARATPKEHHDFIVNHLVDNTRKLEELAIFERIQIYQR 205 (253)
T ss_dssp TTCEEEEEEECCCHHHHHHHHHHHHHHTTTSCSCC-------CCCTTHHHHHHHHHHHHHTTCCSEEEEECT
T ss_pred CCCcEEEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhHHHHHHHHhhccCCCeEEEEeC
Confidence 577888889999999999999999653 3444554333333444443332 23456777777764
No 3
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.50 E-value=2.8e-13 Score=120.94 Aligned_cols=140 Identities=16% Similarity=0.125 Sum_probs=95.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH-hccccCCCCCeEEEeCcccccchHHHHHHhcCCCC--CchhhHHHHHhHhHHHHH
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMK-ESFWSGAATNAVVVEADAFKETDVIYRALSSKGHH--DDMLQTAELVHQSSTDAA 248 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~-~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p--~d~~~~ae~v~~~a~~la 248 (477)
+|.+|+|.|+|||||||+++.|++ .+ ++.+|+.|.++. .+.+.... .......+ .......
T Consensus 1 M~~~I~i~G~~GsGKST~a~~L~~~~~-------~~~~i~~d~~r~------~~~~~~~~~~~~~~~~~~---~~~~~~~ 64 (181)
T 1ly1_A 1 MKKIILTIGCPGSGKSTWAREFIAKNP-------GFYNINRDDYRQ------SIMAHEERDEYKYTKKKE---GIVTGMQ 64 (181)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHST-------TEEEECHHHHHH------HHTTSCCGGGCCCCHHHH---HHHHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHHHHhhcC-------CcEEecHHHHHH------HhhCCCccchhhhchhhh---hHHHHHH
Confidence 588999999999999999999998 44 478999988742 23321000 00100111 1122445
Q ss_pred HHHHHHHH---hCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhh
Q 011773 249 SSLLVTAL---NEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQ 325 (477)
Q Consensus 249 ~~li~~aL---~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~ 325 (477)
...+..++ ..|.+||+|+++....+++.+.+.++
T Consensus 65 ~~~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~------------------------------------------- 101 (181)
T 1ly1_A 65 FDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAK------------------------------------------- 101 (181)
T ss_dssp HHHHHHHHTSCSSCCEEEECSCCCSHHHHHHHHHHHH-------------------------------------------
T ss_pred HHHHHHHHhhccCCCeEEEeCCCCCHHHHHHHHHHHH-------------------------------------------
Confidence 56777888 88999999999888766655443321
Q ss_pred hccCCCceEEEEEEecCHHHHHHHHHHhhhccccccchhhhhhHHHHHHHh
Q 011773 326 VFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANA 376 (477)
Q Consensus 326 ~~~~~pY~I~lv~V~~d~elav~Rv~~R~~~gGr~Vp~~~ql~~~~rf~~~ 376 (477)
..|+.+.+++++||++++++|...|.. +.++.+.+.++++.|...
T Consensus 102 ---~~~~~~~~i~l~~~~~~~~~R~~~R~~---~~~~~~~i~~~~~~~~~~ 146 (181)
T 1ly1_A 102 ---EYGWKVEHKVFDVPWTELVKRNSKRGT---KAVPIDVLRSMYKSMREY 146 (181)
T ss_dssp ---HHTCEEEEEECCCCHHHHHHHHTTCGG---GCCCHHHHHHHHHHHHHH
T ss_pred ---HcCCCEEEEEEeCCHHHHHHHHhcccc---CCCCHHHHHHHHHHhhcc
Confidence 124456678899999999999988864 567777777777776654
No 4
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.41 E-value=3.5e-12 Score=124.35 Aligned_cols=142 Identities=15% Similarity=0.117 Sum_probs=98.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcC--CCCCchhhHHHHHhHhHHHHHH
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK--GHHDDMLQTAELVHQSSTDAAS 249 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~--g~p~d~~~~ae~v~~~a~~la~ 249 (477)
+|.+|+|.|+|||||||+++.|++.+ .++.+|+.|.++. .+... +.........+. .....+.
T Consensus 1 M~~~I~l~G~~GsGKST~a~~L~~~~------~~~~~i~~D~~r~------~~~~~~~g~~~~~~~~~~~---~~~~~~~ 65 (301)
T 1ltq_A 1 MKKIILTIGCPGSGKSTWAREFIAKN------PGFYNINRDDYRQ------SIMAHEERDEYKYTKKKEG---IVTGMQF 65 (301)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHS------TTEEEECHHHHHH------HHTTSCCCC---CCHHHHH---HHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhC------CCcEEecccHHHH------HhccCCcccccccchhhhh---HHHHHHH
Confidence 47899999999999999999999874 2578999998742 23321 110000001111 1123345
Q ss_pred HHHHHHH---hCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhh
Q 011773 250 SLLVTAL---NEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQV 326 (477)
Q Consensus 250 ~li~~aL---~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~ 326 (477)
..+..++ ..|.+||+|+++..+.+++.+.+.+
T Consensus 66 ~~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~--------------------------------------------- 100 (301)
T 1ltq_A 66 DTAKSILYGGDSVKGVIISDTNLNPERRLAWETFA--------------------------------------------- 100 (301)
T ss_dssp HHHHHHTTSCTTCCEEEECSCCCCHHHHHHHHHHH---------------------------------------------
T ss_pred HHHHHHHhhccCCCEEEEeCCCCCHHHHHHHHHHH---------------------------------------------
Confidence 5677788 8899999999998877666554332
Q ss_pred ccCCCceEEEEEEecCHHHHHHHHHHhhhccccccchhhhhhHHHHHHHhH
Q 011773 327 FSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAF 377 (477)
Q Consensus 327 ~~~~pY~I~lv~V~~d~elav~Rv~~R~~~gGr~Vp~~~ql~~~~rf~~~~ 377 (477)
...++.+.+|++++|++++++|...|. +|.++.+.+.+++++|....
T Consensus 101 -~~~~~~~~~i~l~~~~e~~~~R~~~R~---~~~~~~e~i~~~~~~~~~~~ 147 (301)
T 1ltq_A 101 -KEYGWKVEHKVFDVPWTELVKRNSKRG---TKAVPIDVLRSMYKSMREYL 147 (301)
T ss_dssp -HHTTCEEEEEECCCCHHHHHHHHHHCG---GGCCCHHHHHHHHHHHHHHH
T ss_pred -HHcCCcEEEEEEECCHHHHHHHHHhcc---CCCCCHHHHHHHHHHHhccc
Confidence 123456678899999999999999986 37888888877777776543
No 5
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.38 E-value=5.7e-12 Score=114.02 Aligned_cols=129 Identities=20% Similarity=0.257 Sum_probs=82.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHH
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 250 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~ 250 (477)
++|.+|+|.|+|||||||+++.|++.++ +.+++.|.+++. +...+ . .. +.. .........+..+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~-------~~~i~~D~~~~~--~~~~~-~--~~-~~~-~~~~~~~~~~~~~~~ 68 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLR-------LPLLSKDAFKEV--MFDGL-G--WS-DRE-WSRRVGATAIMMLYH 68 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHT-------CCEEEHHHHHHH--HHHHH-C--CC-SHH-HHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC-------CeEecHHHHHHH--HHHhc-C--cc-chH-HHHHhhHHHHHHHHH
Confidence 4689999999999999999999999874 678999988532 22222 1 11 111 111112223344555
Q ss_pred HHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccCC
Q 011773 251 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRK 330 (477)
Q Consensus 251 li~~aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~~ 330 (477)
.+..+++.|..||+|+++........+.++ . ...
T Consensus 69 ~~~~~l~~g~~vi~d~~~~~~~~~~~~~~l-------------------------------~---------------~~~ 102 (193)
T 2rhm_A 69 TAATILQSGQSLIMESNFRVDLDTERMQNL-------------------------------H---------------TIA 102 (193)
T ss_dssp HHHHHHHTTCCEEEEECCCHHHHHHHHHHH-------------------------------H---------------HHS
T ss_pred HHHHHHhCCCeEEEecCCCCHHHHHHHHHH-------------------------------H---------------Hhc
Confidence 677788899999999988321111111111 0 112
Q ss_pred CceEEEEEEecCHHHHHHHHHHhhhcccc
Q 011773 331 PYRIELVGVVCDAYLAVVRGIRRAIMMKR 359 (477)
Q Consensus 331 pY~I~lv~V~~d~elav~Rv~~R~~~gGr 359 (477)
++...+|++++|++++.+|...|...+.|
T Consensus 103 ~~~~~~v~l~~~~e~~~~R~~~R~~~~~r 131 (193)
T 2rhm_A 103 PFTPIQIRCVASGDVLVERILSRIAQGAR 131 (193)
T ss_dssp CCEEEEEEEECCHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEEEeCCHHHHHHHHHHhcCcccc
Confidence 34456789999999999999999764434
No 6
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.31 E-value=2e-10 Score=103.30 Aligned_cols=36 Identities=28% Similarity=0.411 Sum_probs=32.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+|.+|+|.|+|||||||+++.|++.++ +.+|+.|.+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~-------~~~i~~d~~ 37 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYG-------YTHLSAGEL 37 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHC-------CEEEEHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC-------CeEEeHHHH
Confidence 588999999999999999999999874 689999887
No 7
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.31 E-value=1.2e-11 Score=128.19 Aligned_cols=122 Identities=21% Similarity=0.182 Sum_probs=90.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHH
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 249 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~ 249 (477)
...|.+|+|+|+|||||||+++.|++.++ +.+|+.|.++.. . .+.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~-------~~~i~~D~~~~~----~------------------------~~~ 299 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAG-------YVHVNRDTLGSW----Q------------------------RCV 299 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGT-------CEECCGGGSCSH----H------------------------HHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcC-------cEEEccchHHHH----H------------------------HHH
Confidence 45689999999999999999999999874 799999998321 1 112
Q ss_pred HHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccC
Q 011773 250 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR 329 (477)
Q Consensus 250 ~li~~aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~ 329 (477)
..+..++..|.+||+|+++.....+..+++++++
T Consensus 300 ~~~~~~l~~g~~vIiD~~~~~~~~r~~~~~~~~~---------------------------------------------- 333 (416)
T 3zvl_A 300 SSCQAALRQGKRVVIDNTNPDVPSRARYIQCAKD---------------------------------------------- 333 (416)
T ss_dssp HHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHH----------------------------------------------
T ss_pred HHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHH----------------------------------------------
Confidence 3556678899999999999988777766554432
Q ss_pred CCceEEEEEEecCHHHHHHHHHHhhhcccc--ccchhhhhhHHHH
Q 011773 330 KPYRIELVGVVCDAYLAVVRGIRRAIMMKR--AVRVNSQLKSHKR 372 (477)
Q Consensus 330 ~pY~I~lv~V~~d~elav~Rv~~R~~~gGr--~Vp~~~ql~~~~r 372 (477)
.++.+.+|++.++.+++++|...|...+++ .++...+.+.+++
T Consensus 334 ~~~~~~~v~l~~~~e~l~~R~~~R~~~~~~~~~~~~~~~~~~~~~ 378 (416)
T 3zvl_A 334 AGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQ 378 (416)
T ss_dssp HTCCEEEEEECCCHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHH
T ss_pred cCCeEEEEEEeCCHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHh
Confidence 244567789999999999999999886554 3444444333333
No 8
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.28 E-value=2e-10 Score=103.17 Aligned_cols=37 Identities=27% Similarity=0.407 Sum_probs=33.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.+|.+|+|+|++||||||+++.|++.++ +.++|.|++
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~-------~~~i~~d~~ 40 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDFG-------WVHLSAGDL 40 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHC-------CEEEEHHHH
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHhC-------CeEeeHHHH
Confidence 4688999999999999999999999874 789999876
No 9
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.24 E-value=4.9e-10 Score=102.85 Aligned_cols=162 Identities=14% Similarity=0.146 Sum_probs=91.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHH------H-hH
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAEL------V-HQ 242 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~------v-~~ 242 (477)
...|.+|+|.|++||||||+++.|++.++ +.+|++|.+.. ......+.+... ..... . ..
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g-------~~~i~~d~~~~-----~~~~~~~~~~~~-~i~~~~~~g~~~~~~ 78 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYS-------FVHLSAGDLLR-----AEQGRAGSQYGE-LIKNCIKEGQIVPQE 78 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSS-------CEEEEHHHHHH-----HHHHSTTCSCHH-HHHHHHHTTCCCCHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcC-------ceEEeHHHHHH-----HHHhccCCHHHH-HHHHHHHcCCcCCHH
Confidence 46688999999999999999999999874 78999997621 111111100000 00000 0 00
Q ss_pred hHHHHHHHHHHHHHhCC-CcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhh
Q 011773 243 SSTDAASSLLVTALNEG-RDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQK 321 (477)
Q Consensus 243 ~a~~la~~li~~aL~~G-~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~ 321 (477)
....++...+...+..| ..+|+|+..........+ ..
T Consensus 79 ~~~~~l~~~i~~~l~~g~~~~i~dg~~~~~~~~~~~----------------------------------~~-------- 116 (203)
T 1ukz_A 79 ITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISF----------------------------------ER-------- 116 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEETCCCSHHHHHHH----------------------------------HH--------
T ss_pred HHHHHHHHHHHhhhccCCCeEEEeCCCCCHHHHHHH----------------------------------HH--------
Confidence 11233444555666777 478888765443221110 00
Q ss_pred hhhhhccCCCceEEEEEEecCHHHHHHHHHHhhhcccccc-chhhhhhHHHHHHHh---HHHhhccCceEEEEecC
Q 011773 322 ENRQVFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAV-RVNSQLKSHKRFANA---FRNYCELVDNARLYCTN 393 (477)
Q Consensus 322 ~~~~~~~~~pY~I~lv~V~~d~elav~Rv~~R~~~gGr~V-p~~~ql~~~~rf~~~---~~~y~~lvD~a~lydnn 393 (477)
....+ . .+|+++||++++++|...|....|+.- ..+.+..++..+.+. +..+....|.++..||+
T Consensus 117 -----~~~~~-~-~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~vi~id~~ 185 (203)
T 1ukz_A 117 -----DIVES-K-FILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCD 185 (203)
T ss_dssp -----HTCCC-S-EEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHHHHHHHHTTTCEEEEECS
T ss_pred -----hcCCC-C-EEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEECC
Confidence 00111 1 358899999999999999986656542 244444454444332 22222457887777865
No 10
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.24 E-value=1.7e-10 Score=103.47 Aligned_cols=120 Identities=13% Similarity=0.098 Sum_probs=77.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHH
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 250 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~ 250 (477)
+.+.+|+|.|+|||||||+++.|+..++ .++++.|.+.....+.+... +...... . .......+..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g-------~~~i~~d~~~~~~~~~~~~~--g~~~~~~---~--~~~~~~~~~~ 71 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLH-------AAFLDGDFLHPRRNIEKMAS--GEPLNDD---D--RKPWLQALND 71 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT-------CEEEEGGGGCCHHHHHHHHT--TCCCCHH---H--HHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhC-------cEEEeCccccchHHHHHhhc--CcCCCcc---c--cccHHHHHHH
Confidence 4578999999999999999999998864 78999999854221222111 2111110 0 0111233344
Q ss_pred HHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccCC
Q 011773 251 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRK 330 (477)
Q Consensus 251 li~~aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~~ 330 (477)
.+..++..|.++|+|+++..+..++.+ ...
T Consensus 72 ~~~~~~~~~~~~vi~~~~~~~~~~~~l--------------------------------------------------~~~ 101 (175)
T 1knq_A 72 AAFAMQRTNKVSLIVCSALKKHYRDLL--------------------------------------------------REG 101 (175)
T ss_dssp HHHHHHHHCSEEEEECCCCSHHHHHHH--------------------------------------------------HTT
T ss_pred HHHHHHhcCCcEEEEeCchHHHHHHHH--------------------------------------------------Hhc
Confidence 566667789999999887655433211 111
Q ss_pred CceEEEEEEecCHHHHHHHHHHhh
Q 011773 331 PYRIELVGVVCDAYLAVVRGIRRA 354 (477)
Q Consensus 331 pY~I~lv~V~~d~elav~Rv~~R~ 354 (477)
+..+.+|+++||++++++|...|.
T Consensus 102 ~~~~~vv~l~~~~e~~~~R~~~R~ 125 (175)
T 1knq_A 102 NPNLSFIYLKGDFDVIESRLKARK 125 (175)
T ss_dssp CTTEEEEEEECCHHHHHHHHHTST
T ss_pred CCCEEEEEEECCHHHHHHHHHhcc
Confidence 223567899999999999999885
No 11
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.22 E-value=9.6e-11 Score=107.89 Aligned_cols=118 Identities=18% Similarity=0.107 Sum_probs=77.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHH
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 250 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~ 250 (477)
++|.+|+|+|+|||||||+++.|++.++ +.+|+.|.+..... ...+.. +...... .......
T Consensus 16 ~~~~~I~l~G~~GsGKSTla~~L~~~lg-------~~~i~~d~~~~~~~-~~~~~~-g~~~~~~---------~~~~~~~ 77 (202)
T 3t61_A 16 RFPGSIVVMGVSGSGKSSVGEAIAEACG-------YPFIEGDALHPPEN-IRKMSE-GIPLTDD---------DRWPWLA 77 (202)
T ss_dssp CCSSCEEEECSTTSCHHHHHHHHHHHHT-------CCEEEGGGGCCHHH-HHHHHH-TCCCCHH---------HHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-------CEEEeCCcCcchhh-HHHHhc-CCCCCch---------hhHHHHH
Confidence 4578999999999999999999999874 78999999853211 111211 1111100 0011122
Q ss_pred HHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccCC
Q 011773 251 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRK 330 (477)
Q Consensus 251 li~~aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~~ 330 (477)
.+...+..|..+|+|+++..+..++.+... .
T Consensus 78 ~l~~~~~~~~~vivd~~~~~~~~~~~l~~~-------------------------------------------------~ 108 (202)
T 3t61_A 78 AIGERLASREPVVVSCSALKRSYRDKLRES-------------------------------------------------A 108 (202)
T ss_dssp HHHHHHTSSSCCEEECCCCSHHHHHHHHHT-------------------------------------------------S
T ss_pred HHHHHHhcCCCEEEECCCCCHHHHHHHHHh-------------------------------------------------c
Confidence 444555889999999998876555433110 1
Q ss_pred CceEEEEEEecCHHHHHHHHHHhhh
Q 011773 331 PYRIELVGVVCDAYLAVVRGIRRAI 355 (477)
Q Consensus 331 pY~I~lv~V~~d~elav~Rv~~R~~ 355 (477)
+..+.+|+++||++++++|...|..
T Consensus 109 ~~~~~vi~l~~~~e~~~~Rl~~R~~ 133 (202)
T 3t61_A 109 PGGLAFVFLHGSESVLAERMHHRTG 133 (202)
T ss_dssp TTCCEEEEEECCHHHHHHHHHHHHS
T ss_pred CCCeEEEEEeCCHHHHHHHHHHhhc
Confidence 2224568999999999999999873
No 12
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.22 E-value=2.6e-10 Score=99.96 Aligned_cols=154 Identities=18% Similarity=0.198 Sum_probs=84.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCC-CchhhHHHHHhHh-HHHHHHHH
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHH-DDMLQTAELVHQS-STDAASSL 251 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p-~d~~~~ae~v~~~-a~~la~~l 251 (477)
.+|+|+|+|||||||+++.| +.++ +.+++.|++- +..+...+.. .+........... .......+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g-------~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERG-------AKVIVMSDVV-----RKRYSIEAKPGERLMDFAKRLREIYGDGVVARL 68 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTT-------CEEEEHHHHH-----HHHHHHHC---CCHHHHHHHHHHHHCTTHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCC-------CcEEEHhHHH-----HHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHH
Confidence 48999999999999999999 7764 6788876652 2222211100 0111111111111 01233445
Q ss_pred HHHHH--hCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccC
Q 011773 252 LVTAL--NEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR 329 (477)
Q Consensus 252 i~~aL--~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~ 329 (477)
+...+ ..+..||+|+. ..+..++.+... ..
T Consensus 69 ~~~~l~~~~~~~vi~dg~-~~~~~~~~l~~~-----------------------------------------------~~ 100 (179)
T 3lw7_A 69 CVEELGTSNHDLVVFDGV-RSLAEVEEFKRL-----------------------------------------------LG 100 (179)
T ss_dssp HHHHHCSCCCSCEEEECC-CCHHHHHHHHHH-----------------------------------------------HC
T ss_pred HHHHHHhcCCCeEEEeCC-CCHHHHHHHHHH-----------------------------------------------hC
Confidence 66666 77889999997 555443322111 11
Q ss_pred CCceEEEEEEecCHHHHHHHHHHhhhccccccchhhhhhHHHHH-HHhHHHhhccCceEEEEecC
Q 011773 330 KPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRF-ANAFRNYCELVDNARLYCTN 393 (477)
Q Consensus 330 ~pY~I~lv~V~~d~elav~Rv~~R~~~gGr~Vp~~~ql~~~~rf-~~~~~~y~~lvD~a~lydnn 393 (477)
.+ ..+|++++|++++.+|...|..... ....+....++.+. ......|...+|.+ .||+
T Consensus 101 ~~--~~~i~l~~~~~~~~~R~~~R~~~~~-~~~~~~~~~r~~~~~~~~~~~~~~~ad~v--Id~~ 160 (179)
T 3lw7_A 101 DS--VYIVAVHSPPKIRYKRMIERLRSDD-SKEISELIRRDREELKLGIGEVIAMADYI--ITND 160 (179)
T ss_dssp SC--EEEEEEECCHHHHHHHHHTCC-----CCCHHHHHHHHHHHHHHTHHHHHHTCSEE--EECC
T ss_pred CC--cEEEEEECCHHHHHHHHHhccCCCC-cchHHHHHHHHHhhhccChHhHHHhCCEE--EECC
Confidence 12 4568999999999999999864311 12233333333221 12244566777754 4554
No 13
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.19 E-value=3.8e-10 Score=102.18 Aligned_cols=37 Identities=19% Similarity=0.343 Sum_probs=33.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
++|.+|+|.|++||||||+++.|++.++ ..+++.|.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~-------~~~i~~d~~ 43 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYG-------YTHLSTGDL 43 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHC-------CEEEEHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhC-------CeEEcHHHH
Confidence 4578999999999999999999999874 689999886
No 14
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.19 E-value=1.6e-10 Score=111.86 Aligned_cols=134 Identities=20% Similarity=0.246 Sum_probs=84.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHHH
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL 251 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~l 251 (477)
+|.+|+|+|+|||||||+++.|++.+.. .+-.+++++.|.++.. +.+ +. .. .+. .........
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~--~g~~~i~~~~D~~~~~------l~~--~~-~~---~e~---~~~~~~~~~ 65 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSK--NNIDVIVLGSDLIRES------FPV--WK-EK---YEE---FIKKSTYRL 65 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEECTHHHHTT------SSS--CC-GG---GHH---HHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHh--CCCEEEEECchHHHHH------Hhh--hh-HH---HHH---HHHHHHHHH
Confidence 4789999999999999999999987310 0112344599987432 211 11 10 011 011222345
Q ss_pred HHHHHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccCCC
Q 011773 252 LVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKP 331 (477)
Q Consensus 252 i~~aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~~p 331 (477)
+..+++. ..||+|+++..+.++..+...++ ..+
T Consensus 66 i~~~l~~-~~vIiD~~~~~~~~~~~l~~~a~----------------------------------------------~~~ 98 (260)
T 3a4m_A 66 IDSALKN-YWVIVDDTNYYNSMRRDLINIAK----------------------------------------------KYN 98 (260)
T ss_dssp HHHHHTT-SEEEECSCCCSHHHHHHHHHHHH----------------------------------------------HTT
T ss_pred HHHHhhC-CEEEEeCCcccHHHHHHHHHHHH----------------------------------------------HcC
Confidence 6667777 89999999887776665544332 123
Q ss_pred ceEEEEEEecCHHHHHHHHHHhhhccccccchhhhhhHHHHH
Q 011773 332 YRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRF 373 (477)
Q Consensus 332 Y~I~lv~V~~d~elav~Rv~~R~~~gGr~Vp~~~ql~~~~rf 373 (477)
+...+|+++||++++.+|...|. +.++.+.+.+.+.++
T Consensus 99 ~~~~vi~l~~~~e~~~~R~~~R~----~~~~~~~l~~~~~~~ 136 (260)
T 3a4m_A 99 KNYAIIYLKASLDVLIRRNIERG----EKIPNEVIKKMYEKF 136 (260)
T ss_dssp CEEEEEEEECCHHHHHHHHHHTT----CSSCHHHHHHHHHHC
T ss_pred CCEEEEEEeCCHHHHHHHHHhCC----CCCCHHHHHHHHHHh
Confidence 44567899999999999998874 555555444444443
No 15
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.18 E-value=1.4e-10 Score=103.91 Aligned_cols=128 Identities=20% Similarity=0.210 Sum_probs=75.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcC--CC--CCchhhHHHHHhHhHHHH
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK--GH--HDDMLQTAELVHQSSTDA 247 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~--g~--p~d~~~~ae~v~~~a~~l 247 (477)
+|.+|+|+|+|||||||+++.|++.++ .++..++.|.++...+ ..+... +. +.......+.........
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~-----~~~~~~~~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP-----EPWLAFGVDSLIEAMP--LKMQSAEGGIEFDADGGVSIGPEFRALEGA 74 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS-----SCEEEEEHHHHHHHSC--GGGGTSTTSEEECTTSCEEECHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC-----CCeEEeccchHhhhcc--hhhccchhhccccCCCccccchhHHHHHHH
Confidence 478999999999999999999999974 2456677887742100 001000 00 000000000001122222
Q ss_pred HHHHHHHHHhCCCcEEEeCCCC-CHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhh
Q 011773 248 ASSLLVTALNEGRDVIMDGTLS-WVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQV 326 (477)
Q Consensus 248 a~~li~~aL~~G~sVIiDgT~s-~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~ 326 (477)
+...+...++.|.+||+|+++. .+..++.+.+.
T Consensus 75 ~~~~~~~~~~~g~~vi~~~~~~~~~~~~~~~~~~---------------------------------------------- 108 (178)
T 1qhx_A 75 WAEGVVAMARAGARIIIDDVFLGGAAAQERWRSF---------------------------------------------- 108 (178)
T ss_dssp HHHHHHHHHHTTCEEEEEECCTTTHHHHHHHHHH----------------------------------------------
T ss_pred HHHHHHHHHhcCCeEEEEeccccChHHHHHHHHH----------------------------------------------
Confidence 3334566778899999999885 33323322211
Q ss_pred ccCCCceEEEEEEecCHHHHHHHHHHhh
Q 011773 327 FSRKPYRIELVGVVCDAYLAVVRGIRRA 354 (477)
Q Consensus 327 ~~~~pY~I~lv~V~~d~elav~Rv~~R~ 354 (477)
. .++.+.+|++.||++++.+|...|.
T Consensus 109 ~--~~~~~~~v~l~~~~e~l~~R~~~r~ 134 (178)
T 1qhx_A 109 V--GDLDVLWVGVRCDGAVAEGRETARG 134 (178)
T ss_dssp H--TTCCEEEEEEECCHHHHHHHHHHTS
T ss_pred h--cCCcEEEEEEECCHHHHHHHHHhhC
Confidence 1 1223556788999999999998874
No 16
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.17 E-value=4.5e-10 Score=103.80 Aligned_cols=122 Identities=15% Similarity=0.103 Sum_probs=79.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHH
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 249 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~ 249 (477)
.+.+.+|+|.|+|||||||+++.|+..++ .++++.|.+.......+...+ ...+.. . .........
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~g-------~~~i~~d~~~~~~~~~~~~~g--~~~~~~---~--~~~~~~~~~ 91 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADETG-------LEFAEADAFHSPENIATMQRG--IPLTDE---D--RWPWLRSLA 91 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHC-------CEEEEGGGGSCHHHHHHHHTT--CCCCHH---H--HHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhhC-------CeEEcccccccHHHHHHHhcC--CCCCCc---c--cccHHHHHH
Confidence 35678999999999999999999998874 789999998543222221212 221110 0 111223445
Q ss_pred HHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccC
Q 011773 250 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR 329 (477)
Q Consensus 250 ~li~~aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~ 329 (477)
..+...+..|.++|+|+++..+..++.+. + ..
T Consensus 92 ~~~~~~~~~g~~viid~~~~~~~~~~~l~----------------------------------~--------------~~ 123 (200)
T 4eun_A 92 EWMDARADAGVSTIITCSALKRTYRDVLR----------------------------------E--------------GP 123 (200)
T ss_dssp HHHHHHHHTTCCEEEEECCCCHHHHHHHT----------------------------------T--------------SS
T ss_pred HHHHHHHhcCCCEEEEchhhhHHHHHHHH----------------------------------H--------------hC
Confidence 56666778899999999887765444220 0 11
Q ss_pred CCceEEEEEEecCHHHHHHHHHHhhh
Q 011773 330 KPYRIELVGVVCDAYLAVVRGIRRAI 355 (477)
Q Consensus 330 ~pY~I~lv~V~~d~elav~Rv~~R~~ 355 (477)
. .+.+|+++||+++.++|...|..
T Consensus 124 ~--~~~vv~l~~~~e~l~~Rl~~R~~ 147 (200)
T 4eun_A 124 P--SVDFLHLDGPAEVIKGRMSKREG 147 (200)
T ss_dssp S--CCEEEEEECCHHHHHHHHTTCSC
T ss_pred C--ceEEEEEeCCHHHHHHHHHhccc
Confidence 1 23568999999999999988753
No 17
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.15 E-value=4.7e-10 Score=101.19 Aligned_cols=37 Identities=19% Similarity=0.139 Sum_probs=32.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.++.+|+|.|+|||||||+++.|++.++ +.++++|++
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l~-------~~~i~~d~~ 38 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQELG-------FKKLSTGDI 38 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHHT-------CEEECHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-------CeEecHHHH
Confidence 3578999999999999999999999874 789999866
No 18
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.14 E-value=2.7e-10 Score=103.46 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=33.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
++|.+|+|.|++||||||+++.|++.++ +.+++.|.+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~-------~~~i~~d~~ 46 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKYG-------FTHLSTGEL 46 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHHT-------CEEEEHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhC-------CeEEcHHHH
Confidence 4578999999999999999999999874 789999887
No 19
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=99.13 E-value=9.8e-10 Score=117.47 Aligned_cols=133 Identities=17% Similarity=0.228 Sum_probs=82.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCch----hhHHHHHhHhHH
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDM----LQTAELVHQSST 245 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~----~~~ae~v~~~a~ 245 (477)
..+|.+|+|+|+|||||||+++.|++.++|. +-+..+++.|+++ +.+.+.....+. ............
T Consensus 32 ~~~~~lIvlvGlpGSGKSTia~~La~~L~~~--~~d~~v~s~D~~r------~~~~~~~~~~~~f~~~~~~~~~~re~~~ 103 (520)
T 2axn_A 32 TNSPTVIVMVGLPARGKTYISKKLTRYLNWI--GVPTKVFNVGEYR------REAVKQYSSYNFFRPDNEEAMKVRKQCA 103 (520)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEHHHHH------HHHHSCCCCGGGGCTTCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc--CCCeEEecccHHH------HHhccCCccccccCcccHHHHHHHHHHH
Confidence 3578999999999999999999999988652 2346778888874 333332100010 001111111221
Q ss_pred HHHHHHHHHHH--hCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhh
Q 011773 246 DAASSLLVTAL--NEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKEN 323 (477)
Q Consensus 246 ~la~~li~~aL--~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~ 323 (477)
..+...+...+ ..|..||+|+|+....+++.+.+.+++
T Consensus 104 ~~~l~~~~~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~---------------------------------------- 143 (520)
T 2axn_A 104 LAALRDVKSYLAKEGGQIAVFDATNTTRERRHMILHFAKE---------------------------------------- 143 (520)
T ss_dssp HHHHHHHHHHHHHSCCCEEEEESCCCSHHHHHHHHHHHHH----------------------------------------
T ss_pred HHHHHHHHHHHHhcCCceEEecCCCCCHHHHHHHHHHHHH----------------------------------------
Confidence 11222333444 579999999999999888876654432
Q ss_pred hhhccCCCceEEEEEEecC-HHHHHHHHHHhhhc
Q 011773 324 RQVFSRKPYRIELVGVVCD-AYLAVVRGIRRAIM 356 (477)
Q Consensus 324 ~~~~~~~pY~I~lv~V~~d-~elav~Rv~~R~~~ 356 (477)
.|+.+.++.+.|+ +++..+|..+|...
T Consensus 144 ------~g~~v~~l~~~~~d~e~i~~ri~~r~~~ 171 (520)
T 2axn_A 144 ------NDFKAFFIESVCDDPTVVASNIMEVKIS 171 (520)
T ss_dssp ------HTCEEEEEEEECCCHHHHHHHHHHHTTT
T ss_pred ------cCCeEEEEEEeCChHHHHHHHHHhhhhc
Confidence 2445666778886 77777777777643
No 20
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.13 E-value=1.9e-10 Score=103.26 Aligned_cols=121 Identities=12% Similarity=0.126 Sum_probs=68.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEE-eCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHH
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 250 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvI-daD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~ 250 (477)
+|.+|+|+|+|||||||+++.|++.++ ..++ ++|.+. +.++. +...+.. .+.... ........
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~-------~~~i~d~~~~g--~~i~~-~~~~g~~-~~~~~~-----~~~~~~~~ 67 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP-------GSFVFEPEEMG--QALRK-LTPGFSG-DPQEHP-----MWIPLMLD 67 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST-------TCEECCTHHHH--HHHHH-TSTTCCS-CGGGST-----THHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC-------CCEEEchhhhH--HHHHH-hCccccc-hhhhhH-----HHHHHHHH
Confidence 578999999999999999999999875 3444 654431 11222 2211111 111111 01112223
Q ss_pred HHHHHHhC-CCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccC
Q 011773 251 LLVTALNE-GRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR 329 (477)
Q Consensus 251 li~~aL~~-G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~ 329 (477)
.+..++.. |..||+|+++....+++.+...++ .
T Consensus 68 ~i~~~l~~~g~~vi~d~~~~~~~~~~~~~~~l~----------------------------------------------~ 101 (183)
T 2vli_A 68 ALQYASREAAGPLIVPVSISDTARHRRLMSGLK----------------------------------------------D 101 (183)
T ss_dssp HHHHHHHHCSSCEEEEECCCCHHHHHHHHHHHH----------------------------------------------H
T ss_pred HHHHHHHhCCCcEEEeeeccCHHHHHHHHHHHH----------------------------------------------h
Confidence 44455565 889999999988766554433221 1
Q ss_pred CCceEEEEEEecCHHHHHHHHHHhh
Q 011773 330 KPYRIELVGVVCDAYLAVVRGIRRA 354 (477)
Q Consensus 330 ~pY~I~lv~V~~d~elav~Rv~~R~ 354 (477)
.++.+.+|+++||++++++|...|.
T Consensus 102 ~~~~~~~i~l~~~~e~~~~R~~~R~ 126 (183)
T 2vli_A 102 RGLSVHHFTLIAPLNVVLERLRRDG 126 (183)
T ss_dssp TTCCCEEEEEECCHHHHHHHHHTC-
T ss_pred cCCceEEEEEeCCHHHHHHHHHhcc
Confidence 2233445899999999999999885
No 21
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.03 E-value=4.6e-10 Score=107.38 Aligned_cols=157 Identities=17% Similarity=0.254 Sum_probs=91.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHHH
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL 251 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~l 251 (477)
.-..|.|+|++||||||+++.|.+ + ++.+||+|.+. +.+...+.+. . . .
T Consensus 8 ~~~~iglTGgigsGKStv~~~l~~-~-------g~~vidaD~ia------~~l~~~~~~~---~-~-------------~ 56 (210)
T 4i1u_A 8 HMYAIGLTGGIGSGKTTVADLFAA-R-------GASLVDTDLIA------HRITAPAGLA---M-P-------------A 56 (210)
T ss_dssp SCCEEEEECCTTSCHHHHHHHHHH-T-------TCEEEEHHHHH------HHHTSTTCTT---H-H-------------H
T ss_pred ceeEEEEECCCCCCHHHHHHHHHH-C-------CCcEEECcHHH------HHHhcCCcHH---H-H-------------H
Confidence 346899999999999999999987 5 48999999983 3344322110 0 0 1
Q ss_pred HHHHHhCCCcEEE-eCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccCC
Q 011773 252 LVTALNEGRDVIM-DGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRK 330 (477)
Q Consensus 252 i~~aL~~G~sVIi-DgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~~ 330 (477)
+ .-..|..++- ||+++++...+.+++...+.. .+|.+.+|....... .++. ....
T Consensus 57 i--~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~~~-----------------~L~~i~HP~I~~~~~-~~~~----~~~~ 112 (210)
T 4i1u_A 57 I--EQTFGPAFVAADGSLDRARMRALIFSDEDARR-----------------RLEAITHPLIRAETE-REAR----DAQG 112 (210)
T ss_dssp H--HHHHCGGGBCTTSSBCHHHHHHHHHHCHHHHH-----------------HHHHHHHHHHHHHHH-HHHH----TCCS
T ss_pred H--HHHhChhhcCCCCCCcHHHHHHHHhCCHHHHH-----------------HHHHHhhHHHHHHHH-HHHH----hcCC
Confidence 1 1123555553 578887777777766544332 234444444332111 0000 0112
Q ss_pred CceE-----------------EEEEEecCHHHHHHHHHHhhhccccccc--hhhhhhHHHHHHHhHHHhhccCceEEEEe
Q 011773 331 PYRI-----------------ELVGVVCDAYLAVVRGIRRAIMMKRAVR--VNSQLKSHKRFANAFRNYCELVDNARLYC 391 (477)
Q Consensus 331 pY~I-----------------~lv~V~~d~elav~Rv~~R~~~gGr~Vp--~~~ql~~~~rf~~~~~~y~~lvD~a~lyd 391 (477)
+|.| .+++|+||++++++|.+.|+..+...+. +..|++. ......+|. +.|
T Consensus 113 ~~vv~d~pLL~E~~~~~~~~D~vi~V~ap~e~r~~Rl~~Rdg~s~eea~~ri~~Q~~~--------eek~~~AD~--VId 182 (210)
T 4i1u_A 113 PYVIFVVPLLVESRNWKARCDRVLVVDCPVDTQIARVMQRNGFTREQVEAIIARQATR--------EARLAAADD--VIV 182 (210)
T ss_dssp SSEEEECTTCTTCHHHHHHCSEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHSCCH--------HHHHHTCSE--EEE
T ss_pred CEEEEEEecccccCCccccCCeEEEEECCHHHHHHHHHhcCCCCHHHHHHHHHHcCCh--------HHHHHhCCE--EEE
Confidence 2322 3788999999999999999843333322 3344332 334466774 456
Q ss_pred cC
Q 011773 392 TN 393 (477)
Q Consensus 392 nn 393 (477)
||
T Consensus 183 N~ 184 (210)
T 4i1u_A 183 ND 184 (210)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 22
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.03 E-value=2.5e-09 Score=99.08 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=29.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.|+|.|+|||||||+++.|++.++ +.++++|++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~-------~~~i~~d~~ 34 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE-------IPHISTGDM 34 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-------CCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcEeeHHHH
Confidence 588999999999999999999874 688999876
No 23
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.01 E-value=2.1e-09 Score=99.78 Aligned_cols=33 Identities=24% Similarity=0.206 Sum_probs=29.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.|+|.|+|||||||+++.|++.++ +.+|++|++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~-------~~~i~~d~~ 34 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG-------IPHISTGDM 34 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS-------CCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcEEeHHHH
Confidence 478999999999999999999874 789999776
No 24
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.98 E-value=4.9e-09 Score=96.33 Aligned_cols=38 Identities=21% Similarity=0.209 Sum_probs=33.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
..+|.+|+|.|+|||||||+++.|++.++ +.+|+.|++
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~-------~~~i~~d~~ 54 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLG-------IPQISTGEL 54 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHT-------CCEEEHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC-------CcEEehhHH
Confidence 46789999999999999999999999874 678998776
No 25
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.94 E-value=7.8e-09 Score=99.14 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=33.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+..|.+|+|.|||||||||+++.|++.++ ..+|++|++
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g-------~~~is~~~~ 63 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHC-------YCHLSTGDL 63 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHHC-------CEEEEHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHhC-------CeEEecHHH
Confidence 35689999999999999999999999874 789999876
No 26
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.93 E-value=4.5e-08 Score=88.03 Aligned_cols=87 Identities=21% Similarity=0.182 Sum_probs=49.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccc---hHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHHH
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET---DVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL 251 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~---d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~l 251 (477)
+|+|.|++||||||+++.|++.+. ..++.++++|..... +.+.+.+.. |.. ++....-.........+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~----~~g~~~i~~d~~~~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~~~l~~~ 75 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK----QKGYFVSLYREPGGTKVGEVLREILLT-EEL-DERTELLLFEASRSKLIEEK 75 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH----HTTCCEEEEESSCSSHHHHHHHHHHHH-SCC-CHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH----HCCCeEEEEeCCCCCchHHHHHHHHcC-CCC-CHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999762 113678888764321 112221221 111 11111111011122334455
Q ss_pred HHHHHhCCCcEEEeCC
Q 011773 252 LVTALNEGRDVIMDGT 267 (477)
Q Consensus 252 i~~aL~~G~sVIiDgT 267 (477)
+..++..|..+|+|..
T Consensus 76 i~~~l~~~~~vi~dr~ 91 (195)
T 2pbr_A 76 IIPDLKRDKVVILDRF 91 (195)
T ss_dssp HHHHHHTTCEEEEESC
T ss_pred HHHHHhCCCEEEECcc
Confidence 6677889999999953
No 27
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.92 E-value=3.8e-08 Score=86.81 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=31.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
.+|+|.|+|||||||+++.|++.++ +.+++.|.+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~-------~~~i~~d~~~ 36 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK-------YPIIKGSSFE 36 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC-------CCEEECCCHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC-------CeeecCcccc
Confidence 3789999999999999999999974 7899999873
No 28
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.91 E-value=1.3e-08 Score=99.93 Aligned_cols=36 Identities=25% Similarity=0.399 Sum_probs=32.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
..|.+|+|+|++||||||+++.|+ .+ ++.+|++|.+
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La-~l-------g~~~id~D~~ 108 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK-NL-------GAYIIDSDHL 108 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH-HH-------TCEEEEHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH-HC-------CCcEEehhHH
Confidence 568999999999999999999999 45 3789999987
No 29
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.87 E-value=1.6e-08 Score=91.83 Aligned_cols=92 Identities=14% Similarity=0.065 Sum_probs=55.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHH
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 249 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~ 249 (477)
.+++.+|+|.|+|||||||+++.|+..+.. .+..+.+++.|.++.. +.+. ..... .+ .......+.
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~--~~~~~~~~~~d~~~~~------~~~~-~~~~~---~~--r~~~~~~~~ 75 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQK--EGYRVEVLDGDWARTT------VSEG-AGFTR---EE--RLRHLKRIA 75 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEHHHHHTT------TTTT-CCCCH---HH--HHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHh--cCCeEEEeeHHHHHHH------Hhhc-cCCCh---hh--HHHHHHHHH
Confidence 356899999999999999999999988642 2233678888887431 2221 11111 11 111111122
Q ss_pred HHHHHHHhCCCcEEEeCCCCCHHHHH
Q 011773 250 SLLVTALNEGRDVIMDGTLSWVPFVE 275 (477)
Q Consensus 250 ~li~~aL~~G~sVIiDgT~s~~~~re 275 (477)
.....++..|..||.|++......++
T Consensus 76 ~~~~~~~~~g~~vi~d~~~~~~~~r~ 101 (186)
T 2yvu_A 76 WIARLLARNGVIVICSFVSPYKQARN 101 (186)
T ss_dssp HHHHHHHTTTCEEEEECCCCCHHHHH
T ss_pred HHHHHHHhCCCEEEEeCccccHHHHH
Confidence 23344567888899998776654443
No 30
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.84 E-value=3.7e-08 Score=88.81 Aligned_cols=37 Identities=24% Similarity=0.281 Sum_probs=32.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
++..|+|.|+|||||||+++.|++.++ +.++|.|.+.
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~-------~~~i~~d~~~ 40 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTK-------RILYDSDKEI 40 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHC-------CCEEEHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC-------CCEEEChHHH
Confidence 356889999999999999999999984 7899999883
No 31
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.82 E-value=2.3e-08 Score=95.84 Aligned_cols=38 Identities=16% Similarity=0.279 Sum_probs=33.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.++|++|+|.|||||||||.|+.|++.++ +.+|++.++
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g-------~~hIstGdl 63 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFH-------FNHLSSGDL 63 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHC-------CEEECHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHC-------CceEcHHHH
Confidence 46789999999999999999999999984 789987655
No 32
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.81 E-value=2.9e-09 Score=98.58 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=25.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+..+.+|+|+|||||||||+++.|++.+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4568899999999999999999999886
No 33
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.81 E-value=1.4e-08 Score=93.39 Aligned_cols=34 Identities=26% Similarity=0.486 Sum_probs=30.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+.+|+|.|+|||||||+++.|+. + +..++|+|.+
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~-l-------g~~~id~d~~ 35 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD-L-------GVPLVDADVV 35 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT-T-------TCCEEEHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-C-------CCcccchHHH
Confidence 57899999999999999999986 5 3789999987
No 34
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.81 E-value=3.6e-08 Score=91.98 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=32.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+.|.+|+|.|+|||||||+++.|++.++ +.+|++|++
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~-------~~~i~~d~~ 38 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFH-------AAHLATGDM 38 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHC-------CEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC-------ceEEehhHH
Confidence 3467999999999999999999999984 689999776
No 35
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.80 E-value=1.4e-07 Score=86.90 Aligned_cols=38 Identities=26% Similarity=0.377 Sum_probs=32.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
..+.+|+|.|+|||||||+++.|++.++ +.+++.|.+.
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~-------~~~i~~d~~~ 60 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLN-------VPFIDLDWYI 60 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHT-------CCEEEHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcC-------CCEEcchHHH
Confidence 3456899999999999999999999984 6889999873
No 36
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.80 E-value=1e-07 Score=86.47 Aligned_cols=123 Identities=18% Similarity=0.154 Sum_probs=73.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHHHH
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLL 252 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~li 252 (477)
+.+++|.|+|||||||+++.|+... .+.++++.|.+... . ..+.-.+.. .........+.+...+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~------~g~~~i~~d~~~~~------~-~~~~~~~~~--~~~~~~~~~~~l~~~~ 66 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL------DNSAYIEGDIINHM------V-VGGYRPPWE--SDELLALTWKNITDLT 66 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS------SSEEEEEHHHHHTT------C-CTTCCCGGG--CHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc------CCeEEEcccchhhh------h-ccccccCcc--chhHHHHHHHHHHHHH
Confidence 5689999999999999999998765 24689999887431 1 111111110 0000111223333344
Q ss_pred HHHHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccCCCc
Q 011773 253 VTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPY 332 (477)
Q Consensus 253 ~~aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~~pY 332 (477)
...+..|.++|+|+++. +..++.+.+.++ ....+.
T Consensus 67 ~~~~~~~~~~ild~~~~-~~~~~~~~~~~~--------------------------------------------s~g~~~ 101 (189)
T 2bdt_A 67 VNFLLAQNDVVLDYIAF-PDEAEALAQTVQ--------------------------------------------AKVDDV 101 (189)
T ss_dssp HHHHHTTCEEEEESCCC-HHHHHHHHHHHH--------------------------------------------HHCSSE
T ss_pred HHHHhcCCcEEEeeccC-HHHHHHHHHHHH--------------------------------------------hcccCC
Confidence 55667888999998653 333222211110 011223
Q ss_pred eEEEEEEecCHHHHHHHHHHhhh
Q 011773 333 RIELVGVVCDAYLAVVRGIRRAI 355 (477)
Q Consensus 333 ~I~lv~V~~d~elav~Rv~~R~~ 355 (477)
.+.++++.+|++..+.|...|..
T Consensus 102 ~~~~i~L~~~~e~l~~R~~~r~~ 124 (189)
T 2bdt_A 102 EIRFIILWTNREELLRRDALRKK 124 (189)
T ss_dssp EEEEEEEECCHHHHHHHTTTSCC
T ss_pred CeEEEEEeCCHHHHHHHHHhccc
Confidence 46667889999999999888754
No 37
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.80 E-value=4.6e-08 Score=92.20 Aligned_cols=33 Identities=21% Similarity=0.206 Sum_probs=29.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+|+|.|++||||||+++.|++.++ ..+|++|++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg-------~~~i~~dd~ 34 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS-------LAHIESGGI 34 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT-------CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CeEEchHHH
Confidence 689999999999999999999874 689999776
No 38
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.79 E-value=6.3e-08 Score=85.73 Aligned_cols=34 Identities=24% Similarity=0.107 Sum_probs=30.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
.|+|.|++||||||+++.|++.++ +.++++|.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~-------~~~i~~d~~~ 35 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN-------IPFYDVDEEV 35 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT-------CCEEEHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC-------CCEEECcHHH
Confidence 689999999999999999999874 6789999873
No 39
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.78 E-value=1.2e-07 Score=84.23 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=30.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.+|+|+|++||||||+++.|++.++ +.++|.|.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg-------~~~id~d~~ 36 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG-------YEFVDTDIF 36 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT-------CEEEEHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC-------CcEEcccHH
Confidence 4799999999999999999999874 789999987
No 40
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.78 E-value=1.7e-07 Score=85.42 Aligned_cols=27 Identities=26% Similarity=0.174 Sum_probs=25.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
+|.+|+|.|++||||||+++.|++.++
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999999999885
No 41
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.75 E-value=5.7e-08 Score=89.62 Aligned_cols=94 Identities=11% Similarity=0.100 Sum_probs=58.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHH
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 249 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~ 249 (477)
..++.+|+|.|+|||||||+++.|+..++. ++.-.++++.|.++.. +.. +.+..+.. .........
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~--~G~~~~~~d~d~~~~~------~~~-~~~~~~~~-----~~~~~~~~~ 87 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQ--KGKLCYILDGDNVRHG------LNR-DLSFKAED-----RAENIRRVG 87 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEEHHHHTTT------TTT-TCCSSHHH-----HHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHh--cCceEEEecCchhhhH------hhc-ccCcChHH-----HHHHHHHHH
Confidence 356899999999999999999999988741 1112348999888431 221 11111110 111122233
Q ss_pred HHHHHHHhCCCcEEEeCCCCCHHHHHHH
Q 011773 250 SLLVTALNEGRDVIMDGTLSWVPFVEQT 277 (477)
Q Consensus 250 ~li~~aL~~G~sVIiDgT~s~~~~re~l 277 (477)
.........|..+|...+...+..++.+
T Consensus 88 ~~~~~~~~~~~~vi~~~~~~~~~~r~~~ 115 (200)
T 3uie_A 88 EVAKLFADAGIICIASLISPYRTDRDAC 115 (200)
T ss_dssp HHHHHHHHTTCEEEEECCCCCHHHHHHH
T ss_pred HHHHHHHhCCceEEEecCCchHHHHHHH
Confidence 4555566789999988877766665543
No 42
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.74 E-value=1.5e-07 Score=87.98 Aligned_cols=35 Identities=26% Similarity=0.207 Sum_probs=31.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+..|+|.|++||||||+++.|++.++ +.+|+.|++
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~-------~~~i~~d~l 39 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYG-------LAHLSTGDM 39 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHC-------CEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC-------ceEEehhHH
Confidence 46789999999999999999999984 789999876
No 43
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.74 E-value=5.4e-08 Score=94.07 Aligned_cols=35 Identities=29% Similarity=0.297 Sum_probs=31.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
.+|+|+|||||||||+++.|++.++ +.+|+.|.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~-------~~~i~~D~~~ 36 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG-------WPVVALDRVQ 36 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC-------CCEEECCSGG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC-------CeEEeccHHh
Confidence 4899999999999999999999874 6899999973
No 44
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=98.73 E-value=2.4e-08 Score=93.49 Aligned_cols=38 Identities=29% Similarity=0.344 Sum_probs=34.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
....+|+|+|++||||||+++.|++.++ +.+||+|.+.
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~lg-------~~vid~D~~~ 47 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKYG-------AHVVNVDRIG 47 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHC-------CEEEEHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcC-------CEEEECcHHH
Confidence 4568999999999999999999999864 8999999983
No 45
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.71 E-value=7.8e-08 Score=89.40 Aligned_cols=85 Identities=12% Similarity=0.099 Sum_probs=52.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHH
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 249 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~ 249 (477)
..++.+|+|.|++||||||+++.|+..++.. .+...++++.|.++.. +... ..... .. .......+.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~-~g~~~~~~~~d~~r~~------l~~~-~~~~~---~~--r~~~~~~~~ 88 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRD-RRVHAYRLDGDNIRFG------LNKD-LGFSE---AD--RNENIRRIA 88 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHH-HCCCEEEECHHHHTTT------TTTT-CCSSH---HH--HHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccc-cCCcEEEECChHHhhh------hccc-cCCCH---HH--HHHHHHHHH
Confidence 3558899999999999999999999876310 0112788988877431 2211 01000 11 112222233
Q ss_pred HHHHHHHhCCCcEEEeCC
Q 011773 250 SLLVTALNEGRDVIMDGT 267 (477)
Q Consensus 250 ~li~~aL~~G~sVIiDgT 267 (477)
..+..++..|..||+|.+
T Consensus 89 ~~~~~~l~~g~~VI~d~~ 106 (211)
T 1m7g_A 89 EVAKLFADSNSIAITSFI 106 (211)
T ss_dssp HHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHCCCEEEEecC
Confidence 456677889999999954
No 46
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.71 E-value=7.5e-08 Score=86.35 Aligned_cols=40 Identities=18% Similarity=0.161 Sum_probs=31.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+.+|+|.|+|||||||+++.|++.++ ..+.++.+++.|++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~--~~g~~~~~i~~~~~ 42 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR--KEGVNYKMVSFGSV 42 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH--TTTCCCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--hcCcceEEEehHHH
Confidence 67999999999999999999999874 01111688987755
No 47
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.67 E-value=5.7e-07 Score=81.21 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+|+|.|++||||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999987
No 48
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.66 E-value=2.3e-07 Score=97.25 Aligned_cols=104 Identities=13% Similarity=0.096 Sum_probs=60.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCC---c-hhhHHHHHhHhHH
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHD---D-MLQTAELVHQSST 245 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~---d-~~~~ae~v~~~a~ 245 (477)
..+|.+|+|.|.|||||||+++.|++.++|. .-+...++.|.++ ..+.+...+. + .....+.......
T Consensus 36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~~~--~~~t~~~~~d~~r------~~~~g~~~~~~ifd~~g~~~~r~re~~~ 107 (469)
T 1bif_A 36 TNCPTLIVMVGLPARGKTYISKKLTRYLNFI--GVPTREFNVGQYR------RDMVKTYKSFEFFLPDNEEGLKIRKQCA 107 (469)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEHHHHH------HHHHCSCCCGGGGCTTCHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHhcc--CCCceEEecchhh------hhhccCCCcccccCCCCHHHHHHHHHHH
Confidence 3568999999999999999999999987642 2235566666553 3332210010 0 0111111111111
Q ss_pred HHHHHHHHHHH--hCCCcEEEeCCCCCHHHHHHHHHHH
Q 011773 246 DAASSLLVTAL--NEGRDVIMDGTLSWVPFVEQTIAMA 281 (477)
Q Consensus 246 ~la~~li~~aL--~~G~sVIiDgT~s~~~~re~liala 281 (477)
..+...+...+ ..|..+|+|+|+.....++.+++.+
T Consensus 108 ~~~l~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~ 145 (469)
T 1bif_A 108 LAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFG 145 (469)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHH
Confidence 11112234445 5688999999999988888776544
No 49
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.66 E-value=6.4e-08 Score=87.30 Aligned_cols=35 Identities=23% Similarity=0.228 Sum_probs=31.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+.+|+|+|+|||||||+++.|++.++ +.+||.|.+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg-------~~~id~D~~ 36 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKALG-------VGLLDTDVA 36 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHHT-------CCEEEHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC-------CCEEeCchH
Confidence 34689999999999999999999884 689999987
No 50
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.65 E-value=3.1e-07 Score=83.12 Aligned_cols=151 Identities=19% Similarity=0.176 Sum_probs=99.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHH
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 250 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~ 250 (477)
+.+.++.|.|+|||||||+++.+.. +..+++.|.++ ..+... +.... . .......+..
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~~---------~~~~~~~d~~~------g~~~~~--~~~~~-~----~~~~~~~~~~ 64 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHFK---------PTEVISSDFCR------GLMSDD--ENDQT-V----TGAAFDVLHY 64 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHSC---------GGGEEEHHHHH------HHHCSS--TTCGG-G----HHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHcc---------CCeEEccHHHH------HHhcCc--ccchh-h----HHHHHHHHHH
Confidence 4578999999999999999998542 24567777663 223321 21111 1 1112233334
Q ss_pred HHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccCC
Q 011773 251 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRK 330 (477)
Q Consensus 251 li~~aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~~ 330 (477)
.....+..|..+++|.++.......+.+++|++.
T Consensus 65 ~~~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral---------------------------------------------- 98 (171)
T 4gp7_A 65 IVSKRLQLGKLTVVDATNVQESARKPLIEMAKDY---------------------------------------------- 98 (171)
T ss_dssp HHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHT----------------------------------------------
T ss_pred HHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHc----------------------------------------------
Confidence 5566778899999999998887777777777642
Q ss_pred CceEEEEEEecCHHHHHHHHHHhhhccccccchhhhhhHHHHHHHhHHHhhccCceEEEEecC
Q 011773 331 PYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVDNARLYCTN 393 (477)
Q Consensus 331 pY~I~lv~V~~d~elav~Rv~~R~~~gGr~Vp~~~ql~~~~rf~~~~~~y~~lvD~a~lydnn 393 (477)
.....++.++.|....-.|...|.. +.+|...+.+....+.+.+.....- ..+.++-+.
T Consensus 99 ~~~p~~lllDEPt~~Ld~~~~~R~~---~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH 157 (171)
T 4gp7_A 99 HCFPVAVVFNLPEKVCQERNKNRTD---RQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILN 157 (171)
T ss_dssp TCEEEEEEECCCHHHHHHHHHTCSS---CCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEEC
T ss_pred CCcEEEEEEeCCHHHHHHHHhcccC---CCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeC
Confidence 1234567888888887788877763 5888888877777777766554433 344555543
No 51
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.64 E-value=3.4e-07 Score=85.83 Aligned_cols=37 Identities=19% Similarity=0.178 Sum_probs=31.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.+|.+|+|.|++||||||+++.|++.++ ..+|+.|++
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~-------~~~i~~d~~ 41 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFE-------LKHLSSGDL 41 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSS-------SEEEEHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcC-------CeEEechHH
Confidence 4468999999999999999999999874 789999876
No 52
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.64 E-value=3.3e-07 Score=82.04 Aligned_cols=87 Identities=16% Similarity=0.116 Sum_probs=49.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCch---hhHHHHHhHhHHHHHHH
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDM---LQTAELVHQSSTDAASS 250 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~---~~~ae~v~~~a~~la~~ 250 (477)
.+|+|.|+|||||||+++.|++.++ ..+..+.+++.|++- ...+...+..... ..............+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~--~~g~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD--NQGINNKIINYGDFM-----LATALKLGYAKDRDEMRKLSVEKQKKLQIDAAK 74 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH--TTTCCEEEEEHHHHH-----HHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--hcCceEEEEECChHH-----HHHHHhcccccchhhhhcCCHHHHHHHHHHHHH
Confidence 4799999999999999999999874 112237788766542 1112111111100 00100101122222333
Q ss_pred HHHHHH--hCCCcEEEeCC
Q 011773 251 LLVTAL--NEGRDVIMDGT 267 (477)
Q Consensus 251 li~~aL--~~G~sVIiDgT 267 (477)
.+..++ ..|..||+|+.
T Consensus 75 ~i~~~l~~~~~~~vi~d~~ 93 (194)
T 1nks_A 75 GIAEEARAGGEGYLFIDTH 93 (194)
T ss_dssp HHHHHHHHTCSSEEEEEEC
T ss_pred HHHHHhhccCCCEEEECCc
Confidence 456666 78999999986
No 53
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.64 E-value=2.1e-07 Score=85.25 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=25.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
+++|.+|+|.|++||||||+++.|++.++
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999999999864
No 54
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.62 E-value=4.9e-08 Score=89.47 Aligned_cols=29 Identities=21% Similarity=0.174 Sum_probs=26.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
+++|.+|+|.|++||||||+++.|++.++
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999999999875
No 55
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=98.62 E-value=4.1e-07 Score=84.85 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=32.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+|.+|+|.|+|||||||+++.|++.++ ..+++.|++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~-------~~~i~~d~~ 39 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ-------LAHISAGDL 39 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC-------CEECCHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-------CceecHHHH
Confidence 467899999999999999999999984 689998876
No 56
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.62 E-value=2.8e-07 Score=87.05 Aligned_cols=38 Identities=21% Similarity=0.212 Sum_probs=32.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
...+..|+|.|++||||||+++.|++.++ +.+|++|++
T Consensus 13 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~-------~~~i~~d~l 50 (233)
T 1ak2_A 13 SPKGVRAVLLGPPGAGKGTQAPKLAKNFC-------VCHLATGDM 50 (233)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHHHT-------CEEEEHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC-------CceecHHHH
Confidence 34567899999999999999999999984 789999765
No 57
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=98.62 E-value=8.6e-07 Score=83.83 Aligned_cols=33 Identities=33% Similarity=0.384 Sum_probs=29.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+|+|.|||||||||.|+.|++.++ +++|++.++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g-------~~~istGdl 34 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG-------FVHISTGDI 34 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-------CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-------CeEEcHHHH
Confidence 688899999999999999999984 799987655
No 58
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.61 E-value=5.9e-07 Score=82.77 Aligned_cols=40 Identities=25% Similarity=0.407 Sum_probs=34.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
-+++.+|+|+|+|||||||+++.|+..+ .++.+|+.|.+-
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~------~~~~~i~~D~~~ 57 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHL------PNCSVISQDDFF 57 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTS------TTEEEEEGGGGB
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhc------CCcEEEeCCccc
Confidence 3567899999999999999999999875 258899999873
No 59
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=98.61 E-value=3.9e-07 Score=84.62 Aligned_cols=35 Identities=31% Similarity=0.517 Sum_probs=31.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+|.+|+|+|++||||||+++.|++ + ++.+||+|.+
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-l-------g~~~id~D~~ 37 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-L-------GINVIDADII 37 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-T-------TCEEEEHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-c-------CCEEEEccHH
Confidence 578999999999999999999987 6 3789999987
No 60
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.60 E-value=7.7e-07 Score=85.13 Aligned_cols=46 Identities=26% Similarity=0.367 Sum_probs=35.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhcccc---CCCCCeEEEeCcccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWS---GAATNAVVVEADAFK 215 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~---~~~~~~vvIdaD~Ik 215 (477)
..+|.+|+|+|++||||||+++.|++.+++. ..+..+.+|+.|.+-
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 4568999999999999999999999987531 001235689999984
No 61
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.59 E-value=4.3e-07 Score=80.72 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=31.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
++.+|+|.|+|||||||+++.|+..++ ..++|+|.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~-------~~~id~d~~ 38 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN-------MEFYDSDQE 38 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT-------CEEEEHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC-------CCEEeccHH
Confidence 467899999999999999999999874 689999876
No 62
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.59 E-value=4.5e-08 Score=88.16 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=32.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+++.+|+|.|+|||||||+++.|++.++ +.+++.|.+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~-------~~~~~~d~~ 45 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSG-------LKYINVGDL 45 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHC-------CEEEEHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhC-------CeEEEHHHH
Confidence 4567899999999999999999999874 789998876
No 63
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.59 E-value=6.8e-07 Score=86.53 Aligned_cols=37 Identities=22% Similarity=0.376 Sum_probs=32.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
++|.+|.|.||+||||||+++.|++.++ +.+++.|.+
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg-------~~~~d~g~~ 43 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALG-------ARYLDTGAM 43 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHT-------CEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-------CCcccCCcH
Confidence 5688999999999999999999999984 789999887
No 64
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.57 E-value=1.3e-06 Score=83.30 Aligned_cols=29 Identities=21% Similarity=0.459 Sum_probs=26.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
..++.+|++.|++||||||+++.|++.+.
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 35689999999999999999999999874
No 65
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.57 E-value=2.5e-07 Score=84.38 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=33.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHh-ccccCCCCCeEEEeCccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKE-SFWSGAATNAVVVEADAF 214 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~-l~~~~~~~~~vvIdaD~I 214 (477)
.+++..|+|+|+|||||||+++.|++. + ++.+||+|.+
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~l~-------g~~~id~d~~ 45 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAELD-------GFQHLEVGKL 45 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHHST-------TEEEEEHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhcC-------CCEEeeHHHH
Confidence 345778999999999999999999998 5 4899999987
No 66
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.55 E-value=4.2e-07 Score=84.48 Aligned_cols=33 Identities=21% Similarity=0.178 Sum_probs=29.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.|+|.|++||||||+++.|++.++ +.+|++|++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g-------~~~i~~d~~ 34 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG-------IPQISTGDM 34 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC-------CCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CeEEeHHHH
Confidence 479999999999999999999874 688998766
No 67
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.50 E-value=8.1e-07 Score=79.98 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=31.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
+++.+|+|.|++||||||+++.|+..+.. .+-..+.+|.|.++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~--~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC--HGIPCYTLDGDNIR 45 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh--CCCcEEEECChHHH
Confidence 35789999999999999999999987610 01135566777764
No 68
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.49 E-value=9.1e-07 Score=96.89 Aligned_cols=122 Identities=11% Similarity=0.034 Sum_probs=73.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHH
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 250 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~ 250 (477)
.+|.+|+|+|.|||||||+++.|++.+. ..+-.++.+|.|.++. .+... ..... ....+..+.+..
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~--~~G~~~v~lDgD~iR~------~L~~~-~~fs~-----~dree~~r~i~e 115 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLV--CHGIPCYTLDGDNIRQ------GLNKN-LGFSP-----EDREENVRRIAE 115 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEESHHHHTT------TTTTT-CCSSH-----HHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEechHHhhh------ccCcc-ccCCh-----hhhHHHHHHHHH
Confidence 4689999999999999999999999871 0012466777777643 13221 01011 011222233344
Q ss_pred HHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccCC
Q 011773 251 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRK 330 (477)
Q Consensus 251 li~~aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~~ 330 (477)
++..+++.|..||.+.+......++.+.+++ ...
T Consensus 116 va~~~l~~G~iVI~d~~s~~~~~r~~~r~ll----------------------------------------------~~~ 149 (630)
T 1x6v_B 116 VAKLFADAGLVCITSFISPYTQDRNNARQIH----------------------------------------------EGA 149 (630)
T ss_dssp HHHHHHHTTCEEEEECCCCCHHHHHHHHHHH----------------------------------------------HTT
T ss_pred HHHHHHhCCCEEEEeCchhhHHHHHHHHHHH----------------------------------------------HhC
Confidence 5566778898888875433333333322211 122
Q ss_pred CceEEEEEEecCHHHHHHHHHH
Q 011773 331 PYRIELVGVVCDAYLAVVRGIR 352 (477)
Q Consensus 331 pY~I~lv~V~~d~elav~Rv~~ 352 (477)
+..+.+|+++||++++.+|..+
T Consensus 150 g~p~~vV~Ldap~Evl~~Rl~r 171 (630)
T 1x6v_B 150 SLPFFEVFVDAPLHVCEQRDVK 171 (630)
T ss_dssp TCCEEEEEEECCHHHHHHHCTT
T ss_pred CCCeEEEEEECCHHHHHHHhcc
Confidence 3345679999999999999763
No 69
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.48 E-value=1.5e-06 Score=78.41 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=33.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
+.+.+++|.|+|||||||+++.|+..++ .+.++++.|.+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~-----~g~i~i~~d~~~ 46 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPG-----VPKVHFHSDDLW 46 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSS-----SCEEEECTTHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccC-----CCeEEEcccchh
Confidence 4578999999999999999999987642 457899998873
No 70
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.46 E-value=1.3e-06 Score=81.05 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=32.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
++.+|.|.|+|||||||+++.|+..++ +.++++|.+
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g-------~~~~d~g~i 39 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQ-------WHLLDSGAI 39 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHT-------CEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-------CCcccCcce
Confidence 356899999999999999999999874 789999987
No 71
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.44 E-value=7.9e-07 Score=81.40 Aligned_cols=33 Identities=33% Similarity=0.396 Sum_probs=29.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.+|+|+|+|||||||+++.|+. ++ +.+++.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g-------~~~i~~d~~ 34 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LG-------AYVLDADKL 34 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TT-------CEEEEHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CC-------CEEEEccHH
Confidence 3689999999999999999998 63 789999987
No 72
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.44 E-value=1.5e-06 Score=94.07 Aligned_cols=94 Identities=13% Similarity=0.185 Sum_probs=59.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHH
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 249 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~ 249 (477)
..+|.+|+|+|+|||||||+++.|++.+++.+ +..+.++|.|.++ +.+.+. .. +.. .+ .....+.+.
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G-~~~~~~lD~D~ir------~~l~~~-~~--f~~-~e--r~~~i~ri~ 459 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQG-GRSVSLLLGDTVR------HELSSE-LG--FTR-ED--RHTNIQRIA 459 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHC-SSCEEEEEHHHHH------HHTCTT-CC--CSH-HH--HHHHHHHHH
T ss_pred cccceEEEeecCCCCCHHHHHHHHHHHhcccC-CceEEEECcHHHH------HHhccc-cC--CCh-hH--HHHHHHHHH
Confidence 45689999999999999999999999875210 0236889888773 334331 11 111 11 112223334
Q ss_pred HHHHHHHhCCCcEEEeCCCCCHHHHHH
Q 011773 250 SLLVTALNEGRDVIMDGTLSWVPFVEQ 276 (477)
Q Consensus 250 ~li~~aL~~G~sVIiDgT~s~~~~re~ 276 (477)
..+...++.|..||.+.+...+..++.
T Consensus 460 ~v~~~~~~~g~~VI~~~is~~~~~R~~ 486 (573)
T 1m8p_A 460 FVATELTRAGAAVIAAPIAPYEESRKF 486 (573)
T ss_dssp HHHHHHHHTTCEEEEECCCCCHHHHHH
T ss_pred HHHHHHHhCCCEEEEEcCCCcHHHHHH
Confidence 566677889999999865555544443
No 73
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=98.43 E-value=1e-05 Score=76.82 Aligned_cols=94 Identities=16% Similarity=0.147 Sum_probs=48.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe-CcccccchHHHHHHhcCCCC-CchhhHHHHHhHhHHHHH
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-ADAFKETDVIYRALSSKGHH-DDMLQTAELVHQSSTDAA 248 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvId-aD~Ike~d~irk~Ls~~g~p-~d~~~~ae~v~~~a~~la 248 (477)
+++.+|++.|++||||||+++.|.+.+. ..+-.+.... ++.-.-...+++-+...... -++....-.....-...+
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~--~~~~~v~~~~~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~ 81 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR--ERGIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHL 81 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEEESSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH--HcCCCcccccCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999998874 1121222221 11100001233334331100 011110111001111223
Q ss_pred HHHHHHHHhCCCcEEEeC
Q 011773 249 SSLLVTALNEGRDVIMDG 266 (477)
Q Consensus 249 ~~li~~aL~~G~sVIiDg 266 (477)
...+..+++.|..||.|-
T Consensus 82 ~~~i~p~l~~g~~Vi~DR 99 (213)
T 4edh_A 82 AGVIRPALARGAVVLCDR 99 (213)
T ss_dssp HHTHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHCCCEEEECc
Confidence 456778899999999993
No 74
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.43 E-value=1.6e-06 Score=77.02 Aligned_cols=36 Identities=25% Similarity=0.280 Sum_probs=31.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
-..|+|.|++||||||+++.|++.++ +.++|+|.+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg-------~~~id~D~~~ 42 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK-------LEVLDTDMII 42 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT-------CCEEEHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC-------CCEEEChHHH
Confidence 35889999999999999999999985 6899999873
No 75
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.42 E-value=8.6e-07 Score=80.44 Aligned_cols=37 Identities=30% Similarity=0.441 Sum_probs=32.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
..+|.+|+|+|++||||||+++.|++. + +.+||+|.+
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g-------~~~id~d~~ 41 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW-G-------YPVLDLDAL 41 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT-T-------CCEEEHHHH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC-C-------CEEEcccHH
Confidence 456899999999999999999999986 4 689999987
No 76
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=98.41 E-value=4.8e-06 Score=76.98 Aligned_cols=36 Identities=28% Similarity=0.416 Sum_probs=32.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+|.+|+|+|++||||||+++.|++.++ +.++|.|.+
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~~~g-------~~~~~~d~~ 37 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVASELS-------MIYVDTGAM 37 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHHHTT-------CEEEEHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC-------CceecCChH
Confidence 367899999999999999999999874 789999987
No 77
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=98.39 E-value=4.6e-06 Score=78.86 Aligned_cols=38 Identities=26% Similarity=0.274 Sum_probs=33.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
..+.+|.|+|++||||||+++.|+..++ +.++|+|.+.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg-------~~~~d~d~~~ 51 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFG-------FTYLDTGAMY 51 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHC-------CEEEEHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC-------CceecCCCee
Confidence 4577999999999999999999999874 7899999883
No 78
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=98.39 E-value=2.1e-06 Score=78.08 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=31.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
+|.|+|++||||||+++.|++.++ +.++|.|.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg-------~~~~d~d~~~ 37 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG-------VPYLSSGLLY 37 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT-------CCEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC-------CceeccchHH
Confidence 899999999999999999999874 7899999883
No 79
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=98.38 E-value=1.6e-05 Score=76.96 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=24.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
.+++.+|++.|++||||||+++.|.+.+.
T Consensus 24 ~~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 24 AMNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp --CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34689999999999999999999998874
No 80
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.38 E-value=1.2e-06 Score=78.69 Aligned_cols=34 Identities=29% Similarity=0.405 Sum_probs=30.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
.|+|.|+|||||||+++.|++.++ +.++|.|.+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~-------~~~~d~d~~~ 39 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD-------LVFLDSDFLI 39 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT-------CEEEEHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC-------CCEEcccHHH
Confidence 588899999999999999999984 7899999873
No 81
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.37 E-value=1.4e-05 Score=72.12 Aligned_cols=24 Identities=38% Similarity=0.423 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
+|+|.|++||||||+++.|++.++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999999984
No 82
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.37 E-value=1.4e-06 Score=93.64 Aligned_cols=91 Identities=12% Similarity=0.072 Sum_probs=59.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHH
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 250 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~ 250 (477)
+.|.+|+++|++||||||+++.|.+.++. .+..+.+++.|.++ +.+.+. .. +.. .+ .......+..
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~--~G~~~~~ld~D~ir------~~l~~~-~~--f~~-~e--r~~~l~~i~~ 435 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQA--RGRKVTLLDGDVVR------THLSRG-LG--FSK-ED--RITNILRVGF 435 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEECHHHHH------HHTCTT-CC--SSH-HH--HHHHHHHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhh--cCCeEEEECchHhh------hhhccc-cc--ccH-HH--HHHHHHHHHH
Confidence 45789999999999999999999998752 12346899988773 334331 11 111 11 1111222334
Q ss_pred HHHHHHhCCCcEEEeCCCCCHHHHH
Q 011773 251 LLVTALNEGRDVIMDGTLSWVPFVE 275 (477)
Q Consensus 251 li~~aL~~G~sVIiDgT~s~~~~re 275 (477)
.+...++.|..||+|+++..+..++
T Consensus 436 ~~~~~l~~G~~VI~d~~~~~~~~r~ 460 (546)
T 2gks_A 436 VASEIVKHNGVVICALVSPYRSARN 460 (546)
T ss_dssp HHHHHHHTTCEEEEECCCCCHHHHH
T ss_pred HHHHHHhCCCEEEEEcCCCCHHHHH
Confidence 5666788999999998877654443
No 83
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.35 E-value=6.6e-07 Score=88.56 Aligned_cols=43 Identities=30% Similarity=0.363 Sum_probs=31.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 216 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike 216 (477)
++.+|.|+||+||||||+++.|++.++. .+..+.+|++|.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~--~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRR--EGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHH--HTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhh--cCCCeeEeecchhhc
Confidence 5778999999999999999999987631 012378999999953
No 84
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.35 E-value=5.2e-06 Score=76.73 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=33.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
..+.++.|+|++||||||+++.|...+.. .+..+.+++.|.+.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~--~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLRE--QGISVCVFHMDDHI 62 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEEEGGGGC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh--cCCeEEEeccCccc
Confidence 55899999999999999999999886521 12346677888874
No 85
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=98.35 E-value=4.3e-05 Score=72.55 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=24.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
++.+|++.|++||||||+++.|.+.+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 368999999999999999999998764
No 86
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.34 E-value=4.4e-06 Score=84.46 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=35.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
.+.|.+|.|+|||||||||+++.|...+.-...++.+.+|+.|.+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 4679999999999999999999998765310112357889999874
No 87
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.32 E-value=9.9e-08 Score=87.17 Aligned_cols=25 Identities=36% Similarity=0.589 Sum_probs=22.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
|.+++|.|||||||||+++.|...+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4678999999999999999998765
No 88
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.31 E-value=6.9e-06 Score=78.97 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=32.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+.+.+|.|.|||||||||+++.|++.++ ..++|.|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg-------~~~~d~g~i 61 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLN-------WRLLDSGAI 61 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTT-------CEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcC-------CCcCCCCce
Confidence 3457999999999999999999999985 688988887
No 89
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=98.30 E-value=5.5e-05 Score=71.21 Aligned_cols=181 Identities=17% Similarity=0.248 Sum_probs=84.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEE-eCcccccchHHHHHHhcCCCCCchhhHHHHHhHh-HHHHHH
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAFKETDVIYRALSSKGHHDDMLQTAELVHQS-STDAAS 249 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvI-daD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~-a~~la~ 249 (477)
|..+|.+-|+.||||||.++.|.+.+. .+..+++. .++.-.-...+++-+... ...++. +....... -...+.
T Consensus 1 M~kFI~~EG~dGsGKsTq~~~L~~~L~---~~~~v~~~~eP~~t~~g~~ir~~l~~~-~~~~~~-~~~lLf~a~R~~~~~ 75 (205)
T 4hlc_A 1 MSAFITFEGPEGSGKTTVINEVYHRLV---KDYDVIMTREPGGVPTGEEIRKIVLEG-NDMDIR-TEAMLFAASRREHLV 75 (205)
T ss_dssp -CEEEEEECCTTSCHHHHHHHHHHHHT---TTSCEEEEESSTTCHHHHHHHHHHHSS-CCCCHH-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHH---CCCCEEEeeCCCCChHHHHHHHHHhcc-cCCCHH-HHHHHHHHHHHHHHH
Confidence 457999999999999999999998872 12223332 232211112334434331 111111 11110110 112234
Q ss_pred HHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHhhhccchhhHhhhhhhhccC
Q 011773 250 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR 329 (477)
Q Consensus 250 ~li~~aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~v~~~~~~~~~~~~~~~~~~ 329 (477)
..+..+++.|..||.|--. ...++ | ++.+ .|.-.+-++.. .. .. ...-
T Consensus 76 ~~i~p~l~~g~~Vi~DRy~------~S~~a---------y-q~~~-----~~~~~~~~~~l-~~-------~~---~~~~ 123 (205)
T 4hlc_A 76 LKVIPALKEGKVVLCDRYI------DSSLA---------Y-QGYA-----RGIGVEEVRAL-NE-------FA---INGL 123 (205)
T ss_dssp HTHHHHHHTTCEEEEECCH------HHHHH---------H-TTTT-----TSSCHHHHHHH-HH-------HH---HTTC
T ss_pred HHHHHHHHcCCEEEecCcc------cchHH---------H-Hhcc-----ccchHHHHHHH-HH-------HH---hcCC
Confidence 5677899999999999321 11111 1 1111 11111111111 10 00 0012
Q ss_pred CCceEEEEEEecCHHHHHHHHHHhhhccccccchhhhhhHHHHHHHhHHHhhcc-CceEEEEecC
Q 011773 330 KPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCEL-VDNARLYCTN 393 (477)
Q Consensus 330 ~pY~I~lv~V~~d~elav~Rv~~R~~~gGr~Vp~~~ql~~~~rf~~~~~~y~~l-vD~a~lydnn 393 (477)
.|- .++++++||+++.+|...|.....|.- ..-..-+++..+.+...... -+++.+.|.|
T Consensus 124 ~PD--l~i~Ld~~~e~~~~Ri~~r~~~~dr~e--~~~~~f~~~v~~~Y~~l~~~~~~~~~~IDa~ 184 (205)
T 4hlc_A 124 YPD--LTIYLNVSAEVGRERIIKNSRDQNRLD--QEDLKFHEKVIEGYQEIIHNESQRFKSVNAD 184 (205)
T ss_dssp CCS--EEEEEECCHHHHHHHHHC-------CC--HHHHHHHHHHHHHHHHHHHSCCTTEEEEETT
T ss_pred CCC--EEeeeCCCHHHHHHHHHhcCCcccchh--ccCHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 332 347889999999999988764333311 11233445555555443322 3457777743
No 90
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.27 E-value=1.7e-05 Score=73.58 Aligned_cols=42 Identities=29% Similarity=0.332 Sum_probs=31.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+.+.++.|.|||||||||+++.|...+... +....+|.-|.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~--g~~~g~v~~d~~ 61 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQ--GLPAEVVPMDGF 61 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHT--TCCEEEEESGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhc--CCceEEEecCCC
Confidence 457899999999999999999998876311 123566766655
No 91
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.26 E-value=1.5e-07 Score=87.73 Aligned_cols=27 Identities=30% Similarity=0.597 Sum_probs=24.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+.+.+|+|.|||||||||+++.|+..+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 457899999999999999999999876
No 92
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=98.26 E-value=4.1e-06 Score=81.14 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=29.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
..-+.|.|+|||||||+++.|++.++ +.+|++|++
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g-------~~~is~gdl 42 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFG-------IPQISTGDM 42 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHT-------CCEECHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhC-------CCeeechHH
Confidence 34578899999999999999999984 789998765
No 93
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.26 E-value=1.3e-05 Score=76.67 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=33.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
.+.+|.|+|++||||||+++.|++.++ +.++|.|.++
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg-------~~~~d~~~~~ 49 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELG-------IHFYDDDILK 49 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHT-------CEEECHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcC-------CcEEcHHHHH
Confidence 467999999999999999999999985 7899988774
No 94
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.22 E-value=7.7e-07 Score=83.30 Aligned_cols=82 Identities=21% Similarity=0.349 Sum_probs=50.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcc--c--------------cCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHH
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESF--W--------------SGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAE 238 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~--~--------------~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae 238 (477)
.|+|+|||||||||+++.|.+.+. + +..|.++.+|+.++|.+ .+.. | .+..+++
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~------~i~~-g---~flE~~~ 72 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKS------MIKN-N---EFIEWAQ 72 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHH------HHHT-T---CEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHH------HHHc-C---CEEEEEE
Confidence 478999999999999999987642 1 11245677777777632 1222 1 2222222
Q ss_pred HHhHhHHHHHHHHHHHHHhCCCcEEEeCC
Q 011773 239 LVHQSSTDAASSLLVTALNEGRDVIMDGT 267 (477)
Q Consensus 239 ~v~~~a~~la~~li~~aL~~G~sVIiDgT 267 (477)
. |...+......+...+++|+++|+|..
T Consensus 73 ~-~g~~YGt~~~~v~~~l~~g~~vil~id 100 (186)
T 1ex7_A 73 F-SGNYYGSTVASVKQVSKSGKTCILDID 100 (186)
T ss_dssp E-TTEEEEEEHHHHHHHHHHTSEEEEECC
T ss_pred E-cCceeeeecceeeehhhCCCEEEecCC
Confidence 1 222233333467788999999999964
No 95
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.22 E-value=6.1e-06 Score=77.27 Aligned_cols=35 Identities=14% Similarity=0.324 Sum_probs=30.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
..+|.|.|++||||||+++.|+++++ +.++|.|.+
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg-------~~~~D~~~~ 40 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYN-------IPLYSKELL 40 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTT-------CCEECHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhC-------cCEECHHHH
Confidence 45899999999999999999999985 689985544
No 96
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=98.15 E-value=1.1e-05 Score=77.50 Aligned_cols=29 Identities=24% Similarity=0.171 Sum_probs=22.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
++++.+|++.|++||||||+++.|.+.+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999999998873
No 97
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=98.15 E-value=1.6e-05 Score=76.43 Aligned_cols=94 Identities=16% Similarity=0.098 Sum_probs=49.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEE-E-eCcccccchHHHHHHhcCCCCCchhhHHH-HHhHhHHH
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVV-V-EADAFKETDVIYRALSSKGHHDDMLQTAE-LVHQSSTD 246 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vv-I-daD~Ike~d~irk~Ls~~g~p~d~~~~ae-~v~~~a~~ 246 (477)
..++.+|++.|++||||||+++.|.+.+... .+-.+.+ . .++.-.-...+++-+.+.... .+ .+.. .....-..
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~-~g~~v~~~treP~~t~~g~~ir~~l~~~~~~-~~-~~e~llf~a~R~~ 94 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSEI-YGVNNVVLTREPGGTLLNESVRNLLFKAQGL-DS-LSELLFFIAMRRE 94 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHHH-HCGGGEEEEESSCSSHHHHHHHHHHHTCSSC-CH-HHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-cCceeeEeeeCCCCChHHHHHHHHHhCCCCC-CH-HHHHHHHHHHHHH
Confidence 4679999999999999999999999876410 1112333 1 333210011223333321101 11 1110 00011113
Q ss_pred HHHHHHHHHHhCCCcEEEeC
Q 011773 247 AASSLLVTALNEGRDVIMDG 266 (477)
Q Consensus 247 la~~li~~aL~~G~sVIiDg 266 (477)
.....+..+++.|..||.|=
T Consensus 95 ~~~~~I~paL~~g~~VI~DR 114 (223)
T 3ld9_A 95 HFVKIIKPSLMQKKIVICDR 114 (223)
T ss_dssp HHHHTHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHhcCCeEEEcc
Confidence 33445777999999999994
No 98
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.12 E-value=2.3e-05 Score=79.98 Aligned_cols=37 Identities=30% Similarity=0.444 Sum_probs=33.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
++|.+|+|.||+||||||++..|++++ +..+||+|.+
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l-------~~eiIs~Ds~ 74 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHF-------PLEVINSDKM 74 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTS-------CEEEEECCSS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHC-------CCcEEccccc
Confidence 456799999999999999999999997 4789999998
No 99
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.10 E-value=1.5e-05 Score=72.35 Aligned_cols=27 Identities=22% Similarity=0.507 Sum_probs=23.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+.+.++.|.|||||||||+++.|+..+
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 346799999999999999999998764
No 100
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.09 E-value=1.8e-06 Score=79.14 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
.+|+|.|++||||||+++.|++.+.
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999998874
No 101
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.08 E-value=2e-05 Score=78.12 Aligned_cols=46 Identities=20% Similarity=0.292 Sum_probs=34.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
...+.+|.|.|+|||||||+++.|...+.-....+.+.+|+.|.+.
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 3568999999999999999999998765200012347788888874
No 102
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.96 E-value=0.00017 Score=68.28 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=30.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+|.+|+|.|+|||||||+++.|++.++ ...++.|.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg-------~~~~~~G~i 61 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG-------LQHLSSGHF 61 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC-------CCCEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC-------CeEecHHHH
Confidence 478999999999999999999999874 456666655
No 103
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.95 E-value=3.9e-06 Score=76.22 Aligned_cols=26 Identities=15% Similarity=0.365 Sum_probs=23.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
++.+++|.|||||||||+++.|...+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35699999999999999999998864
No 104
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.94 E-value=3.2e-05 Score=75.21 Aligned_cols=35 Identities=26% Similarity=0.285 Sum_probs=31.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
...|+|.|+|||||||+++.|+..++ ..++|.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg-------~~~~d~d~~ 82 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG-------YTFFDCDTL 82 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT-------CEEEEHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC-------CcEEeCcHH
Confidence 45799999999999999999999885 689999987
No 105
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.94 E-value=2.8e-05 Score=70.58 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=24.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+|.+|+|.|++||||||+++.|++.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999986
No 106
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.87 E-value=2e-05 Score=79.92 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=33.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
++|.+|+|+||+||||||++..|++.+ +..+||.|.+.
T Consensus 3 ~m~~~i~i~GptGsGKTtla~~La~~l-------~~~iis~Ds~q 40 (323)
T 3crm_A 3 SLPPAIFLMGPTAAGKTDLAMALADAL-------PCELISVDSAL 40 (323)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHS-------CEEEEEECTTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc-------CCcEEeccchh
Confidence 357899999999999999999999997 37999999873
No 107
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=97.85 E-value=0.00061 Score=63.45 Aligned_cols=88 Identities=17% Similarity=0.197 Sum_probs=47.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEE-eCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHHHH
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLL 252 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvI-daD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~li 252 (477)
.+|.+-|+-||||||.++.|.+.+. ..+..+++. .++.-.-...+++.+.... . .+.. ...............+
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~--~~g~~v~~treP~~t~~~~~ir~~l~~~~-~-~~~~-~~ll~~a~r~~~~~~I 75 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLE--KRGKKVILKREPGGTETGEKIRKILLEEE-V-TPKA-ELFLFLASRNLLVTEI 75 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCSSHHHHHHHHHHHHSC-C-CHHH-HHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH--HCCCcEEEEECCCCCcHHHHHHHHhhccc-C-ChHH-HHHHHHHHHHHHHHHH
Confidence 3788999999999999999988763 222233332 1221111123344343321 1 1111 1111111112233567
Q ss_pred HHHHhCCCcEEEeC
Q 011773 253 VTALNEGRDVIMDG 266 (477)
Q Consensus 253 ~~aL~~G~sVIiDg 266 (477)
..+++.|..||.|-
T Consensus 76 ~~~L~~g~~Vi~DR 89 (197)
T 3hjn_A 76 KQYLSEGYAVLLDR 89 (197)
T ss_dssp HHHHTTTCEEEEES
T ss_pred HHHHHCCCeEEecc
Confidence 78999999999993
No 108
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.77 E-value=4e-05 Score=77.73 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=32.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+|.+|+|+||+||||||++..|++.+ +..+||+|.+
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~-------~~~iis~Ds~ 37 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRL-------NGEVISGDSM 37 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTT-------TEEEEECCGG
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhC-------ccceeecCcc
Confidence 46799999999999999999999987 3789999987
No 109
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.70 E-value=6e-05 Score=71.63 Aligned_cols=28 Identities=25% Similarity=0.471 Sum_probs=23.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
++...+++|.|||||||||+.+.|....
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 4667899999999999999999998865
No 110
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.69 E-value=2.9e-05 Score=79.23 Aligned_cols=36 Identities=19% Similarity=0.435 Sum_probs=32.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
++.+|+|+||+||||||++..|++.++ ..+|+.|.+
T Consensus 6 m~~lI~I~GptgSGKTtla~~La~~l~-------~~iis~Ds~ 41 (340)
T 3d3q_A 6 KPFLIVIVGPTASGKTELSIEVAKKFN-------GEIISGDSM 41 (340)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT-------EEEEECCSS
T ss_pred CCceEEEECCCcCcHHHHHHHHHHHcC-------Cceeccccc
Confidence 567999999999999999999999973 789999987
No 111
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.69 E-value=0.00037 Score=65.63 Aligned_cols=27 Identities=33% Similarity=0.589 Sum_probs=24.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
.+.+.+|.|.|++||||||+++.|...
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 466899999999999999999998765
No 112
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.67 E-value=3.4e-05 Score=70.85 Aligned_cols=39 Identities=18% Similarity=0.421 Sum_probs=32.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+.+.+|.|.|||||||||+++.|+..++ +.+.+|+.|.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~-----~~i~~v~~d~~ 42 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG-----ERVALLPMDHY 42 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG-----GGEEEEEGGGC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEecCcc
Confidence 4578999999999999999999998763 13778988876
No 113
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.66 E-value=0.00021 Score=77.03 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=33.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
.++.+|+|.|+|||||||+++.|+..+.. ..+..+.++|.|.++
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~-~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLME-MGGRCVTLLDGDIVR 410 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHT-TCSSCEEEESSHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcc-cCCceEEEECCcHHH
Confidence 45789999999999999999999988741 001125579999873
No 114
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.61 E-value=1e-05 Score=76.43 Aligned_cols=28 Identities=18% Similarity=0.378 Sum_probs=24.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
...+.+|+|.||+||||||+++.|...+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3467899999999999999999999875
No 115
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.57 E-value=6.1e-05 Score=76.23 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=34.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
..+|.+|+|+||+||||||++..|++.+ +..+|++|..
T Consensus 7 ~~~~~~i~i~GptgsGKt~la~~La~~~-------~~~iis~Ds~ 44 (316)
T 3foz_A 7 ASLPKAIFLMGPTASGKTALAIELRKIL-------PVELISVDSA 44 (316)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHS-------CEEEEECCTT
T ss_pred CCCCcEEEEECCCccCHHHHHHHHHHhC-------CCcEEecccc
Confidence 3568899999999999999999999997 3789999986
No 116
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.44 E-value=0.00015 Score=75.69 Aligned_cols=35 Identities=20% Similarity=0.407 Sum_probs=31.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+.+|+|+||+||||||++..|++.++ ..+|++|..
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~-------~~iis~Ds~ 36 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN-------GEVINSDSM 36 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT-------EEEEECCTT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC-------CeEeecCcc
Confidence 56899999999999999999999984 678999985
No 117
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.34 E-value=0.00011 Score=69.68 Aligned_cols=45 Identities=31% Similarity=0.435 Sum_probs=32.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhcccc---CCCCCeEEEeCccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWS---GAATNAVVVEADAF 214 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~---~~~~~~vvIdaD~I 214 (477)
-+.+.+|.|.|||||||||+++.|+..++.. .......+++.|.+
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~ 69 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRF 69 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcC
Confidence 4668999999999999999999998876410 00113447777765
No 118
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.33 E-value=0.00011 Score=66.62 Aligned_cols=27 Identities=33% Similarity=0.612 Sum_probs=24.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+.+.+|+|.|||||||||+++.|...+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 347799999999999999999998875
No 119
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.22 E-value=0.00039 Score=68.88 Aligned_cols=46 Identities=20% Similarity=0.364 Sum_probs=33.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeE-EEeCcccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAV-VVEADAFK 215 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~v-vIdaD~Ik 215 (477)
.+.|.+|.|+|++||||||+++.|...+...++..... +|..|.+-
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 45689999999999999999999988764100001234 44999874
No 120
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.18 E-value=0.00066 Score=67.90 Aligned_cols=45 Identities=24% Similarity=0.429 Sum_probs=36.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 216 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike 216 (477)
..+|.+|+|.|+|||||||++..|+..+. ..+..+.++++|.++.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~D~~r~ 145 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAADTFRA 145 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECTTCH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEccccccH
Confidence 45689999999999999999999987653 2234678899998863
No 121
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=97.12 E-value=0.00019 Score=68.82 Aligned_cols=40 Identities=20% Similarity=0.300 Sum_probs=24.9
Q ss_pred CCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 156 ESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 156 ~~~~~~v~~~~~~~~~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
...|+- .+..+..++|.+|+|.|++||||||+++.|++.+
T Consensus 9 ~~~~~~--~~~~~~~~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 9 KRSCPS--FSASSEGTRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp ----------------CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred hccCCC--CcccccccCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 345653 2333335678999999999999999999999987
No 122
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.04 E-value=0.00054 Score=69.14 Aligned_cols=44 Identities=20% Similarity=0.388 Sum_probs=34.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
.+.|.++.|.|||||||||+++.|+..+. ..+....+++.|.++
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r 169 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFR 169 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeecccc
Confidence 46799999999999999999999887643 123356677888775
No 123
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.00 E-value=0.0023 Score=64.21 Aligned_cols=45 Identities=22% Similarity=0.350 Sum_probs=36.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 216 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike 216 (477)
...|.+|+|+|++||||||++..|+..+. ..+....++++|.++.
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~--~~g~kVllid~D~~r~ 146 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYA--ELGYKVLIAAADTFRA 146 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCCSCH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCcch
Confidence 46689999999999999999999987653 2345688999998753
No 124
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.98 E-value=0.0007 Score=67.69 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=32.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.+.+.++.|.|+|||||||+++.|...+........+.+|.-|.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 366899999999999999999999876531111124667777765
No 125
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.96 E-value=0.0016 Score=64.70 Aligned_cols=44 Identities=25% Similarity=0.430 Sum_probs=33.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
...|.++.|.|+|||||||+++.|+..+.. .++.+.+.+.|.++
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~g~V~l~g~d~~r 140 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFR 140 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSC
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeecccc
Confidence 456899999999999999999999876531 12345666777764
No 126
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.96 E-value=0.002 Score=67.90 Aligned_cols=44 Identities=27% Similarity=0.413 Sum_probs=36.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 216 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike 216 (477)
..|.+|+++|++||||||++..|+..+ ...+..+.++++|.++.
T Consensus 98 ~~p~vIlivG~~G~GKTTt~~kLA~~l--~~~G~kVllv~~D~~R~ 141 (443)
T 3dm5_A 98 EKPTILLMVGIQGSGKTTTVAKLARYF--QKRGYKVGVVCSDTWRP 141 (443)
T ss_dssp SSSEEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEEECCCSST
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCCcch
Confidence 369999999999999999999998765 24455788999999864
No 127
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.92 E-value=0.004 Score=59.25 Aligned_cols=28 Identities=25% Similarity=0.203 Sum_probs=25.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
.++.+|++.|++||||||+++.|.+.+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3578999999999999999999999984
No 128
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.90 E-value=0.00062 Score=72.87 Aligned_cols=43 Identities=7% Similarity=0.202 Sum_probs=33.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 213 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~ 213 (477)
+.+.+|++.|.|||||||+++.|++++++...+..+.++|.|.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 5678999999999999999999999986311112357888887
No 129
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.86 E-value=0.00041 Score=64.02 Aligned_cols=26 Identities=42% Similarity=0.723 Sum_probs=21.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
.+.+++|.|||||||||+.+.|...+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35689999999999999999998754
No 130
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.82 E-value=0.003 Score=66.32 Aligned_cols=44 Identities=20% Similarity=0.329 Sum_probs=36.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 216 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike 216 (477)
..|.+|+++|++||||||++..|+..+. ..+..+.++++|.++.
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~--~~G~kVllv~~D~~r~ 138 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYK--KRGYKVGLVAADVYRP 138 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECCSCH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEecCccch
Confidence 4689999999999999999999887652 3345678899998864
No 131
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.76 E-value=0.00081 Score=63.41 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=24.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+|.+|++.|++||||||+++.|++.+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999999987
No 132
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.75 E-value=0.00041 Score=64.91 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=18.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHH-Hhc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIM-KES 197 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La-~~l 197 (477)
+.+.+++|.|||||||||+++.|+ ..+
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 456799999999999999999998 654
No 133
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.75 E-value=0.00071 Score=66.35 Aligned_cols=40 Identities=25% Similarity=0.401 Sum_probs=32.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.+.|..+++.||||+|||++|+.++..++ ..++.++...+
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~-----~~~i~v~~~~l 72 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMG-----INPIMMSAGEL 72 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHT-----CCCEEEEHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEeHHHh
Confidence 46688999999999999999999999985 35677765554
No 134
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.74 E-value=0.0014 Score=65.31 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=33.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
..|.++.|.|||||||||+++.|+..+. ..++.+.+.+.|.++
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~--~~~g~V~l~g~D~~r 142 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQ--NLGKKVMFCAGDTFR 142 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEECCCCSS
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEeecCCC
Confidence 4688999999999999999999987653 123356677777764
No 135
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.73 E-value=0.003 Score=64.66 Aligned_cols=44 Identities=25% Similarity=0.430 Sum_probs=33.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
...|.++.|.|+|||||||+++.|+..+.. .++.+.+.+.|.++
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~G~V~l~g~D~~r 197 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFR 197 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSC
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhccc--cCCEEEEecccccc
Confidence 457899999999999999999999876531 12345666777764
No 136
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.70 E-value=0.0015 Score=61.82 Aligned_cols=37 Identities=30% Similarity=0.389 Sum_probs=30.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
|.-++|.||||+||||+++.++..++ ..++.++...+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~-----~~~~~i~~~~~ 81 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAK-----VPFFTISGSDF 81 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT-----CCEEEECSCSS
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcC-----CCEEEEeHHHH
Confidence 45589999999999999999998874 34677776666
No 137
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.70 E-value=0.0016 Score=61.14 Aligned_cols=39 Identities=23% Similarity=0.341 Sum_probs=31.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
..|.-+++.||||+||||+++.++..++ .....++...+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~-----~~~~~~~~~~~ 75 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQ-----VPFLAMAGAEF 75 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT-----CCEEEEETTTT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEechHHH
Confidence 3466789999999999999999999874 35677777666
No 138
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.66 E-value=0.0013 Score=60.10 Aligned_cols=41 Identities=5% Similarity=0.114 Sum_probs=31.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
+..++|.||+|+||||+++.++..+. ..+..+.+++.+.+.
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~--~~~~~~~~~~~~~~~ 92 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARAN--ELERRSFYIPLGIHA 92 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEGGGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEHHHHH
Confidence 56788999999999999999988763 123456788877663
No 139
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.62 E-value=0.00099 Score=61.46 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=23.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
....++.|.|||||||||+.+.|...+
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 557899999999999999999998764
No 140
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.0034 Score=66.00 Aligned_cols=39 Identities=23% Similarity=0.306 Sum_probs=32.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+.|.=|+|.||||+|||++|++++..++ .++..|++..+
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~~-----~~~~~v~~s~l 251 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATIG-----ANFIFSPASGI 251 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT-----CEEEEEEGGGT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC-----CCEEEEehhhh
Confidence 4578999999999999999999999985 34666766665
No 141
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.60 E-value=0.0014 Score=62.55 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=30.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.+..|+|+||+||||||+|..|+++. ..+|+.|..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g--------~~iIsdDs~ 67 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG--------HRLIADDRV 67 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT--------CEEEESSEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC--------CeEEecchh
Confidence 46789999999999999999999884 378888876
No 142
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.60 E-value=0.0018 Score=59.00 Aligned_cols=38 Identities=21% Similarity=0.208 Sum_probs=30.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 213 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~ 213 (477)
+...++++.|+|||||||++..++... +.++.+++.+.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~~~-----~~~v~~i~~~~ 55 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGLLS-----GKKVAYVDTEG 55 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHHHH-----CSEEEEEESSC
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHc-----CCcEEEEECCC
Confidence 346799999999999999999998732 34678888775
No 143
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.58 E-value=0.0014 Score=59.82 Aligned_cols=41 Identities=12% Similarity=0.269 Sum_probs=30.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
...+++|.|+|||||||+++.++.... ..+..+.+++.+.-
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~~ 62 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEES 62 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSSC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcccC
Confidence 457999999999999999999885431 11235778887764
No 144
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.57 E-value=0.001 Score=59.53 Aligned_cols=41 Identities=15% Similarity=0.184 Sum_probs=29.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+..+++.|||||||||+++.++..+.. ..+..+.+++..++
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~-~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYE-KKGIRGYFFDTKDL 78 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHH-HSCCCCCEEEHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH-HcCCeEEEEEHHHH
Confidence 578899999999999999999876510 11224556665554
No 145
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.56 E-value=0.0018 Score=59.94 Aligned_cols=41 Identities=17% Similarity=0.372 Sum_probs=31.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
...+++|.|+|||||||++..++...- ..+.++.+++.+.-
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~--~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL--KMGEPGIYVALEEH 62 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEESSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccCC
Confidence 467999999999999999988866531 23456888988764
No 146
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.55 E-value=0.001 Score=61.73 Aligned_cols=43 Identities=21% Similarity=0.311 Sum_probs=30.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+...++.|.|||||||||+++.++.... ..++.+..+++.+..
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~~~-~~~~~~~~~~~~~~~ 70 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGA-EEYGEPGVFVTLEER 70 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHH-HHHCCCEEEEESSSC
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH-HhCCCeEEEEEccCC
Confidence 3568999999999999999998873210 011345677776654
No 147
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.55 E-value=0.0041 Score=66.48 Aligned_cols=44 Identities=23% Similarity=0.468 Sum_probs=32.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
-..|.+++|.|+|||||||+++.|+..+.. .++.+.+.+.|.++
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~--~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQ--QGKSVMLAAGDTFR 333 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEECCCTTC
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhh--cCCeEEEecCcccc
Confidence 356899999999999999999999875421 12334455688875
No 148
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.55 E-value=0.0035 Score=65.77 Aligned_cols=39 Identities=23% Similarity=0.303 Sum_probs=32.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+.|+=|++.||||+|||++|++++.+++ .++..|++..+
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~~-----~~f~~v~~s~l 251 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQTN-----ATFLKLAAPQL 251 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT-----CEEEEEEGGGG
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHhC-----CCEEEEehhhh
Confidence 4588999999999999999999999985 34566666665
No 149
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.54 E-value=0.001 Score=62.36 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=23.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+.+.++.|.|||||||||+++.|...+
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 457799999999999999999998764
No 150
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.0041 Score=65.13 Aligned_cols=39 Identities=23% Similarity=0.393 Sum_probs=31.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+.|+=+++.||||+|||++|++++..++ .++..|+...+
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~~-----~~~~~v~~~~l 242 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANSTK-----AAFIRVNGSEF 242 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHHT-----CEEEEEEGGGT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEecchh
Confidence 4578899999999999999999999985 24556665555
No 151
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.51 E-value=0.0018 Score=63.14 Aligned_cols=34 Identities=29% Similarity=0.440 Sum_probs=28.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 176 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 176 IlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
++|.|||||||||+++.++..++ .+.+.++...+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~-----~~~i~i~g~~l 80 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESG-----LNFISVKGPEL 80 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTT-----CEEEEEETTTT
T ss_pred EEEECCCCCcHHHHHHHHHHHcC-----CCEEEEEcHHH
Confidence 99999999999999999998864 35666766555
No 152
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.51 E-value=0.0021 Score=61.85 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=30.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.|.-++|.||||+||||+++.++..++ ..+..++...+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~-----~~~~~i~~~~l 90 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS-----ATFLNISAASL 90 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT-----CEEEEEESTTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC-----CCeEEeeHHHH
Confidence 367889999999999999999999874 34556766555
No 153
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.49 E-value=0.0023 Score=63.39 Aligned_cols=45 Identities=20% Similarity=0.342 Sum_probs=35.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 216 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike 216 (477)
..|.++++.|++||||||++..|+..+.. ..|..+.+++.|.++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~-~~G~~V~lv~~D~~r~ 147 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML-EKHKKIAFITTDTYRI 147 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCCEEEEECCCSST
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH-hcCCEEEEEecCcccc
Confidence 45789999999999999999999876521 1234688999999753
No 154
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.49 E-value=0.0021 Score=61.44 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=29.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.|.-++|.||||+||||+++.++..++ ..+..++...+
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~-----~~~~~v~~~~~ 87 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETN-----ATFIRVVGSEL 87 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTT-----CEEEEEEGGGG
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC-----CCEEEEehHHH
Confidence 356689999999999999999999874 34556666555
No 155
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.48 E-value=0.0044 Score=64.60 Aligned_cols=39 Identities=15% Similarity=0.280 Sum_probs=31.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+.|+=+++.||||+|||++|++++.+.+ .++..|++.++
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~~-----~~f~~v~~s~l 218 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHTD-----CKFIRVSGAEL 218 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHHT-----CEEEEEEGGGG
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhhC-----CCceEEEhHHh
Confidence 4477899999999999999999999985 24555665555
No 156
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.47 E-value=0.0023 Score=65.93 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=25.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
-+.+.+++|.|||||||||+++.|+..+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3567899999999999999999999876
No 157
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.47 E-value=0.0014 Score=60.11 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l 197 (477)
.++|.|||||||||+.+.|+..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998775
No 158
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.45 E-value=0.0015 Score=59.88 Aligned_cols=42 Identities=12% Similarity=0.263 Sum_probs=29.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhcccc----CCCCCeEEEeCcc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWS----GAATNAVVVEADA 213 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~----~~~~~~vvIdaD~ 213 (477)
...++.|.|||||||||+++.++...... ....+.++++.+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 46899999999999999999998643110 0122366777654
No 159
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.43 E-value=0.002 Score=58.17 Aligned_cols=27 Identities=22% Similarity=0.636 Sum_probs=23.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+...++.|.|||||||||+.+.|+..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 446799999999999999999998865
No 160
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.42 E-value=0.0018 Score=56.35 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=22.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+..++|.|++|+||||+++.++..+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 5567899999999999999998875
No 161
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.38 E-value=0.0033 Score=61.35 Aligned_cols=39 Identities=23% Similarity=0.401 Sum_probs=30.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
..|.+++++||+|+||||+++.++..++ ..+..+|+...
T Consensus 46 ~~~~~~L~~G~~G~GKT~la~~la~~l~-----~~~~~i~~~~~ 84 (324)
T 3u61_B 46 KIPHIILHSPSPGTGKTTVAKALCHDVN-----ADMMFVNGSDC 84 (324)
T ss_dssp CCCSEEEECSSTTSSHHHHHHHHHHHTT-----EEEEEEETTTC
T ss_pred CCCeEEEeeCcCCCCHHHHHHHHHHHhC-----CCEEEEccccc
Confidence 4467899999999999999999999874 34556665544
No 162
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.38 E-value=0.0062 Score=60.07 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=30.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
..|.-++|.||||+|||++|+.++..++ ..+..|+...+
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~~-----~~~~~v~~~~l 87 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEAN-----STFFSVSSSDL 87 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHHT-----CEEEEEEHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHC-----CCEEEEchHHH
Confidence 3467899999999999999999999874 34555655443
No 163
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.37 E-value=0.0017 Score=62.01 Aligned_cols=42 Identities=21% Similarity=0.210 Sum_probs=32.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
....++.|.|||||||||+.+.|..-. .|..|-+.++...+.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~---~p~~G~I~~~g~~~~ 70 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD---KPTEGEVYIDNIKTN 70 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS---CCSEEEEEETTEECT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC---CCCceEEEECCEEcc
Confidence 567899999999999999999987543 344567778776553
No 164
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.35 E-value=0.002 Score=60.06 Aligned_cols=33 Identities=18% Similarity=0.429 Sum_probs=26.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 213 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~ 213 (477)
+++|.|++||||||+|..++.. + ....+|.+..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~-----~~~~yiaT~~ 33 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-A-----PQVLYIATSQ 33 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-C-----SSEEEEECCC
T ss_pred CEEEECCCCCcHHHHHHHHHhc-C-----CCeEEEecCC
Confidence 4789999999999999999865 3 3577887744
No 165
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.35 E-value=0.0022 Score=62.41 Aligned_cols=41 Identities=24% Similarity=0.383 Sum_probs=30.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCC-CCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAA-TNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~-~~~vvIdaD~I 214 (477)
+...++++.|||||||||+.+.+...+. +. .+.+.++.|.+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~---~~~~G~I~~~g~~i 64 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYHIITIEDPI 64 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH---HHCCCEEEEEESSC
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC---CCCCCEEEEcCCcc
Confidence 3467999999999999999999887642 11 24566666655
No 166
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.32 E-value=0.0023 Score=58.11 Aligned_cols=40 Identities=23% Similarity=0.310 Sum_probs=29.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
|.-++|.|++|+||||+++.++..+. ..+..+.+++...+
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~--~~~~~~~~~~~~~~ 93 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELA--KRNVSSLIVYVPEL 93 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEEEHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEhHHH
Confidence 46788999999999999999988763 22334666766554
No 167
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.31 E-value=0.0028 Score=60.63 Aligned_cols=38 Identities=32% Similarity=0.465 Sum_probs=30.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.|.-+++.||||+||||+++.++..++ ..+..+++..+
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~-----~~~~~i~~~~~ 86 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLAN-----APFIKVEATKF 86 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT-----CCEEEEEGGGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEcchhc
Confidence 355678899999999999999999874 35677877666
No 168
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.0058 Score=64.78 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=31.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+.|+=|+|.||||+|||++|++++.+++ ..+..|+...+
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~-----~~fi~vs~s~L 279 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTD-----ATFIRVIGSEL 279 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHT-----CEEEEEEGGGG
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccC-----CCeEEEEhHHh
Confidence 4588999999999999999999999985 24556666555
No 169
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.30 E-value=0.0049 Score=64.44 Aligned_cols=44 Identities=18% Similarity=0.352 Sum_probs=34.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 216 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike 216 (477)
..|.+|+++|++|+||||++..|+..+- ..+..+.++++|.++.
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~--~~G~kVllv~~D~~r~ 140 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQ--KRGLKPALIAADTYRP 140 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHH--HHHCCEEEECCSCCCT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEeccccCc
Confidence 4578999999999999999999887642 1224578999998753
No 170
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.29 E-value=0.0019 Score=63.19 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=29.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
..|..++|.||||+||||+++.++..++ .+...|+...+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~-----~~~i~v~~~~l 85 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISIKGPEL 85 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTT-----CEEEEECHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhC-----CCEEEEEhHHH
Confidence 3467899999999999999999999874 34455544333
No 171
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.27 E-value=0.0034 Score=57.96 Aligned_cols=42 Identities=14% Similarity=0.272 Sum_probs=31.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhcccc----CCCCCeEEEeCcc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWS----GAATNAVVVEADA 213 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~----~~~~~~vvIdaD~ 213 (477)
...+++|.|+|||||||++..++...-.. +...+.++++.+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 46799999999999999999998742110 0134678888776
No 172
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.22 E-value=0.003 Score=60.47 Aligned_cols=41 Identities=15% Similarity=0.352 Sum_probs=31.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+...++.|.|||||||||+.+.|+.-+ .|..|.+.++.-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~ 66 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY---QPTAGEITIDGQPI 66 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS---CCSBSCEEETTEES
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCEEh
Confidence 567899999999999999999997643 24456777765444
No 173
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.22 E-value=0.0083 Score=63.12 Aligned_cols=39 Identities=15% Similarity=0.342 Sum_probs=32.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+.|.=|++.||||+|||++|++++.+++ .++..|+..++
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~~-----~~fi~v~~s~l 252 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQTS-----ATFLRIVGSEL 252 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHHT-----CEEEEEESGGG
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHhC-----CCEEEEEHHHh
Confidence 4578899999999999999999999985 34566666665
No 174
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=96.22 E-value=0.029 Score=56.41 Aligned_cols=156 Identities=13% Similarity=0.097 Sum_probs=82.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHH
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 250 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~ 250 (477)
..|++|++-|.-||||||.++.|.+.+. ..++.++.... |.+. +..+ .. ++
T Consensus 84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ld----prg~~V~~~~~----------------Pt~e----E~~~-~y---l~- 134 (304)
T 3czq_A 84 GKRVMAVFEGRDAAGKGGAIHATTANMN----PRSARVVALTK----------------PTET----ERGQ-WY---FQ- 134 (304)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSC----TTTEEEEECCS----------------CCHH----HHTS-CT---TH-
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhc----ccCCeEEEeCC----------------cChH----HHhc-hH---HH-
Confidence 4599999999999999999999999874 23454542211 2110 0000 00 01
Q ss_pred HHHHHH-hCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhH-HhhhccchhhHhhhhhhhcc
Q 011773 251 LLVTAL-NEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYW-EQVKEGEEDYQQKENRQVFS 328 (477)
Q Consensus 251 li~~aL-~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw-~~v~~~~~~~~~~~~~~~~~ 328 (477)
....++ ..|.-+|+|-..-..-..+.+. |...+.-| ..+...+ ..++...
T Consensus 135 R~~~~LP~~G~IvIfDRswYs~v~~~rv~----------------------g~~~~~e~~~~~~~In------~FE~~L~ 186 (304)
T 3czq_A 135 RYVATFPTAGEFVLFDRSWYNRAGVEPVM----------------------GFCTPDQYEQFLKEAP------RFEEMIA 186 (304)
T ss_dssp HHHTTCCCTTCEEEEEECGGGGTTHHHHH----------------------TSSCHHHHHHHHHHHH------HHHHHHH
T ss_pred HHHHhcccCCeEEEEECCcchHHHHHHHh----------------------cCCCHHHHHHHHHHHH------HHHHHHH
Confidence 223334 7899999995443221111110 11112112 1222110 1111123
Q ss_pred CCCceEEEEEEecCHHHHHHHHHHhhhcccc--cc-chhh-hhhHHHHHHHhHHHhhcc
Q 011773 329 RKPYRIELVGVVCDAYLAVVRGIRRAIMMKR--AV-RVNS-QLKSHKRFANAFRNYCEL 383 (477)
Q Consensus 329 ~~pY~I~lv~V~~d~elav~Rv~~R~~~gGr--~V-p~~~-ql~~~~rf~~~~~~y~~l 383 (477)
..|+.+..++++.+++.+..|...|-..-.. .+ +.+. .+..|.++...+..+...
T Consensus 187 ~~G~~~lKf~L~Is~eeq~kR~~~R~~dp~k~Wk~s~~D~~~~~~~~~y~~a~~~ml~~ 245 (304)
T 3czq_A 187 NEGIHLFKFWINIGREMQLKRFHDRRHDPLKIWKLSPMDIAALSKWDDYTGKRDRMLKE 245 (304)
T ss_dssp HHTCEEEEEEEECCHHHHHHHHHHHHHCTTTGGGCCHHHHHGGGGHHHHHHHHHHHHHH
T ss_pred hCCCeeEEEEEECCHHHHHHHHHHhhcCcccccCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777789999999999999887432111 11 2222 234556666666555443
No 175
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.22 E-value=0.003 Score=56.10 Aligned_cols=42 Identities=26% Similarity=0.415 Sum_probs=31.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
....++|.|++||||||+++.+..... ..+....+++...+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~--~~g~~~~~~~~~~~~ 76 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL--EAGKNAAYIDAASMP 76 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH--TTTCCEEEEETTTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEcHHHhh
Confidence 355788999999999999999988753 112237788776653
No 176
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.17 E-value=0.003 Score=59.61 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=26.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 176 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 176 IlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
++|.||||+||||+++.++.... .+.+.++...+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~ 85 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDF 85 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHH
Confidence 89999999999999999998763 34566654433
No 177
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.14 E-value=0.0048 Score=59.39 Aligned_cols=42 Identities=19% Similarity=0.284 Sum_probs=32.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 216 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike 216 (477)
+..+++.||||+||||+|+.++..+.. ....+..++...+..
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~--~~~~~~~~~~~~~~~ 88 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFD--TEEAMIRIDMTEYME 88 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHS--CGGGEEEEEGGGCCS
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcC--CCcceEEeecccccc
Confidence 357999999999999999999988631 122467788777644
No 178
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.13 E-value=0.0071 Score=56.84 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=34.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 213 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~ 213 (477)
..++.++++.|.+|+||||++..|+..+. .+....+||.|.
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~---~g~~v~vvd~D~ 51 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLE---DNYKVAYVNLDT 51 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHT---TTSCEEEEECCS
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHH---CCCeEEEEeCCC
Confidence 46789999999999999999999987652 344678899885
No 179
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.11 E-value=0.0028 Score=56.49 Aligned_cols=26 Identities=23% Similarity=0.170 Sum_probs=22.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
|-+.+|.|+|||||||+.++|.-.++
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 44899999999999999999987653
No 180
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.11 E-value=0.0033 Score=56.42 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=23.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
|..++|.|++|+||||+++.++..+.
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 55889999999999999999998764
No 181
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.10 E-value=0.0043 Score=61.73 Aligned_cols=27 Identities=30% Similarity=0.279 Sum_probs=23.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
.|..+++.||||+||||+++.++..++
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 356688999999999999999999874
No 182
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.10 E-value=0.0033 Score=61.39 Aligned_cols=42 Identities=21% Similarity=0.235 Sum_probs=33.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
....++.|.|||||||||+.+.|+.-. .+..|-+.++...+.
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~---~p~~G~I~~~g~~~~ 76 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL---SPSHGECHLLGQNLN 76 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS---CCSSCEEEETTEETT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC---CCCCcEEEECCEECC
Confidence 457899999999999999999997644 344567888776653
No 183
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.10 E-value=0.0026 Score=55.51 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+..++|.|++|+||||+++.++..+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999999876
No 184
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.10 E-value=0.0054 Score=58.56 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=24.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
..|.-+++.||+|+||||+|+.++...+
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4567899999999999999999999864
No 185
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.09 E-value=0.0047 Score=61.36 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=31.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
..|.-++|.||||+||||+|+.++..+. +..+..+++.++
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~----~~~~~~i~~~~l 82 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEAN----NSTFFSISSSDL 82 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTT----SCEEEEEECCSS
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcC----CCcEEEEEhHHH
Confidence 3457899999999999999999999862 234566776665
No 186
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.09 E-value=0.0044 Score=57.06 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+.++.++|++||||||++..|...+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 4578889999999999999998875
No 187
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.08 E-value=0.0022 Score=60.75 Aligned_cols=41 Identities=22% Similarity=0.270 Sum_probs=31.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+...++.|.|||||||||+.+.++.-. .|..|-+.++.-.+
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~ 68 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD---APTEGKVFLEGKEV 68 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS---CCSEEEEEETTEEC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC---CCCceEEEECCEEC
Confidence 456799999999999999999987543 24446677765444
No 188
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.07 E-value=0.0057 Score=63.95 Aligned_cols=45 Identities=31% Similarity=0.462 Sum_probs=36.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCC-CCCeEEEeCccccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA-ATNAVVVEADAFKE 216 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~-~~~~vvIdaD~Ike 216 (477)
...|.+|+++|++|+||||++..|+..+. .. +..+.+|++|.++.
T Consensus 97 ~~~~~vI~ivG~~GvGKTT~a~~LA~~l~--~~~G~kVllvd~D~~r~ 142 (433)
T 2xxa_A 97 AQPPAVVLMAGLQGAGKTTSVGKLGKFLR--EKHKKKVLVVSADVYRP 142 (433)
T ss_dssp SSSSEEEEEECSTTSSHHHHHHHHHHHHH--HTSCCCEEEEECCCSST
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH--HhcCCeEEEEecCCCCc
Confidence 35689999999999999999999987653 23 45788999998864
No 189
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.04 E-value=0.0031 Score=61.24 Aligned_cols=41 Identities=27% Similarity=0.365 Sum_probs=31.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+...++.|.|||||||||+.+.|+.-. .|..|.+.++...+
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~---~p~~G~i~~~g~~~ 70 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE---KPSEGAIIVNGQNI 70 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS---CCSEEEEEETTEEC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCEEc
Confidence 567899999999999999999987543 23446677766544
No 190
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.03 E-value=0.0058 Score=58.84 Aligned_cols=44 Identities=23% Similarity=0.259 Sum_probs=31.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCC--CCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA--ATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~--~~~~vvIdaD~I 214 (477)
+.+.-++|.||||+||||+|+.++..++..+. ...++.+++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 44567899999999999999998887642111 124667776665
No 191
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.01 E-value=0.0029 Score=60.46 Aligned_cols=27 Identities=30% Similarity=0.513 Sum_probs=23.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+...++.|.|||||||||+.+.|+.-+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 567899999999999999999997654
No 192
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.99 E-value=0.0027 Score=62.43 Aligned_cols=41 Identities=17% Similarity=0.325 Sum_probs=31.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+...++.|.|||||||||+.+.|..-. .|..|-+.++...+
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~---~p~~G~I~~~G~~i 72 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL---KPSSGRILFDNKPI 72 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS---CCSEEEEEETTEEC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC---CCCCeEEEECCEEC
Confidence 557899999999999999999997643 24456677776655
No 193
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.97 E-value=0.013 Score=62.57 Aligned_cols=44 Identities=18% Similarity=0.254 Sum_probs=34.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 216 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike 216 (477)
..|..|+|+|++||||||++..|+..+. ..+....+|++|.++.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~--~~G~kVllVd~D~~r~ 142 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQ--RKGWKTCLICADTFRA 142 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEeccccch
Confidence 5688999999999999999999987652 2235688999998864
No 194
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.96 E-value=0.0052 Score=57.58 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=28.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
...-++++|+||+||||+|..|.++ ++.+|+-|.+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r--------G~~lvaDD~v 49 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR--------GHQLVCDDVI 49 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT--------TCEEEESSEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc--------CCeEecCCEE
Confidence 3578999999999999999999986 2566765554
No 195
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.95 E-value=0.0031 Score=60.93 Aligned_cols=41 Identities=27% Similarity=0.244 Sum_probs=31.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+...++.|.|||||||||+.+.|+.-. .|..|-+.++.-.+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~---~p~~G~i~~~g~~~ 71 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL---KADEGRVYFENKDI 71 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS---CCSEEEEEETTEEC
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEEC
Confidence 456799999999999999999997644 23446677776555
No 196
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.95 E-value=0.0037 Score=61.13 Aligned_cols=41 Identities=20% Similarity=0.236 Sum_probs=32.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+...++.|.|+|||||||+.+.|+.-+ .|..|.+.++.-.+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~---~p~~G~I~~~g~~i 83 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY---QPTGGKVLLDGEPL 83 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS---CCSEEEEEETTEEG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCCEEEECCEEc
Confidence 567899999999999999999997654 23456777776555
No 197
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.93 E-value=0.0055 Score=60.88 Aligned_cols=23 Identities=43% Similarity=0.774 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHh
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
.+++|+|++||||||+.+.|...
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 47889999999999999999865
No 198
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.93 E-value=0.0036 Score=60.18 Aligned_cols=40 Identities=23% Similarity=0.201 Sum_probs=30.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+. .++.|.|||||||||+.+.++.-. .|..|-+.++.-.+
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~ 62 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV---KPDRGEVRLNGADI 62 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS---CCSEEEEEETTEEC
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEC
Confidence 45 799999999999999999998654 23445677765444
No 199
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.92 E-value=0.0065 Score=60.10 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
|. +++.||||+||||+++.++..+
T Consensus 47 ~~-~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 47 PH-LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CC-EEEECSSSSSHHHHHHHHHHHH
T ss_pred ce-EEEECCCCCCHHHHHHHHHHHH
Confidence 44 7899999999999999999876
No 200
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.92 E-value=0.0072 Score=61.17 Aligned_cols=38 Identities=26% Similarity=0.290 Sum_probs=31.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.+.-++|.|++|+|||++|+.++..++ ..++.+++..+
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~-----~~~~~v~~~~l 184 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESN-----ATFFNISAASL 184 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTT-----CEEEEECSCCC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhc-----CcEEEeeHHHh
Confidence 356889999999999999999999874 35666777666
No 201
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.91 E-value=0.0033 Score=60.56 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=31.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+...++.|.|+|||||||+.+.|+.-+ .|..|-+.++.-.+
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~I~i~g~~~ 73 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY---IPENGQVLIDGHDL 73 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS---CCSEEEEEETTEET
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCEEh
Confidence 456799999999999999999987654 23446677776555
No 202
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.89 E-value=0.0045 Score=56.86 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
..+++++|++||||||++..|...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4578899999999999999998764
No 203
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.88 E-value=0.007 Score=59.76 Aligned_cols=42 Identities=24% Similarity=0.302 Sum_probs=34.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
.|.++.+.|++|+||||++..|+..+. ..+....+++.|..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~--~~~~~v~l~~~d~~~ 138 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQR 138 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH--HTTCCEEEEECCSSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCccc
Confidence 688999999999999999999987652 234567889999875
No 204
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.87 E-value=0.0084 Score=60.35 Aligned_cols=38 Identities=24% Similarity=0.299 Sum_probs=28.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.|.-++|.||||+||||+|+.++..++ ..+..|+..++
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~~-----~~~~~v~~~~l 120 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEAN-----STFFSVSSSDL 120 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHHT-----CEEEEEEHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC-----CCEEEeeHHHH
Confidence 345688899999999999999999874 23455554433
No 205
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.87 E-value=0.019 Score=60.65 Aligned_cols=40 Identities=18% Similarity=0.125 Sum_probs=32.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 216 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike 216 (477)
.+..++|.||+|+||||+|+.++..++ ..++.+++..+..
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~-----~~~i~in~s~~~~ 115 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELG-----YDILEQNASDVRS 115 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTT-----CEEEEECTTSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC-----CCEEEEeCCCcch
Confidence 457899999999999999999999875 2456677766644
No 206
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.86 E-value=0.0043 Score=60.40 Aligned_cols=43 Identities=16% Similarity=0.157 Sum_probs=30.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|||||||||+.+.|+.-.. ..+..|-+.++.-.+
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~-~~p~~G~I~~~g~~i 86 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGRED-YEVTGGTVEFKGKDL 86 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTCTT-CEEEEEEEEETTEEG
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCCeEEEECCEEC
Confidence 5578999999999999999999986410 011235667765544
No 207
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.86 E-value=0.0032 Score=60.27 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=31.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+...++.|.|||||||||+.+.|+.-+ .|..|-+.++.-.+
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~ 70 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLV---RAQKGKIIFNGQDI 70 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS---CCSEEEEEETTEEC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEEC
Confidence 456799999999999999999997643 24456677766544
No 208
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.85 E-value=0.0052 Score=59.03 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=26.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 176 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 176 IlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
++|.|||||||||+++.++..+. .+.+.++...+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~ 109 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDF 109 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHH
T ss_pred EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHH
Confidence 89999999999999999998763 34566654433
No 209
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.84 E-value=0.0033 Score=59.78 Aligned_cols=37 Identities=30% Similarity=0.373 Sum_probs=27.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 210 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvId 210 (477)
+...++.|.|||||||||+.+.|+.-+. |..|-+.++
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~ 68 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHS 68 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEEC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCc---CCccEEEEC
Confidence 4567999999999999999999976542 333455554
No 210
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.84 E-value=0.009 Score=67.24 Aligned_cols=39 Identities=18% Similarity=0.335 Sum_probs=30.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+.|+=|+|.||||+|||++|+.++.+++ .....|+..++
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~elg-----~~~~~v~~~~l 274 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANETG-----AFFFLINGPEI 274 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTTT-----CEEEEEEHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhC-----CeEEEEEhHHh
Confidence 5688999999999999999999999874 23445554443
No 211
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.84 E-value=0.0064 Score=61.12 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=31.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
..|.-++|.||+|+||||+|+.++..++ ..+..|++..+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~-----~~~~~i~~~~l 153 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSG-----ATFFSISASSL 153 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTT-----CEEEEEEGGGG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC-----CeEEEEehHHh
Confidence 3467799999999999999999999874 34566766555
No 212
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.83 E-value=0.0044 Score=59.65 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=30.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh--ccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKE--SFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~--l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|..- +. |..|-+.++.-.+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~---p~~G~I~~~g~~~ 69 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGDPEYT---VERGEILLDGENI 69 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTCTTCE---EEEEEEEETTEEC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCceEEEECCEEC
Confidence 45679999999999999999999863 21 2235667766555
No 213
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.83 E-value=0.0037 Score=61.21 Aligned_cols=40 Identities=23% Similarity=0.332 Sum_probs=30.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+.-++|.||+|+||||+++.++..+. ..+..+.+++++.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~--~~~~~~~~i~~~~~ 76 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAK--KRGYRVIYSSADDF 76 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHH--HTTCCEEEEEHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH--HCCCEEEEEEHHHH
Confidence 45678899999999999999988752 11235778887765
No 214
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.83 E-value=0.0038 Score=60.91 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=31.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+...++.|.|||||||||+.+.|..-. .|..|-+.++.-.+
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~---~p~~G~I~~~g~~i 88 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE---DFDEGEIIIDGINL 88 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS---CCSEEEEEETTEES
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC---CCCCcEEEECCEEC
Confidence 567899999999999999999987543 23446677766444
No 215
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.82 E-value=0.0039 Score=60.55 Aligned_cols=41 Identities=24% Similarity=0.225 Sum_probs=31.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|||||||||+.+.|+.-. .|..|-+.++.-.+
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~---~p~~G~I~~~g~~~ 79 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI---KPSSGIVTVFGKNV 79 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS---CCSEEEEEETTEET
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC---CCCceEEEECCEEC
Confidence 567899999999999999999997643 23445677765444
No 216
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.81 E-value=0.0079 Score=62.64 Aligned_cols=40 Identities=25% Similarity=0.365 Sum_probs=29.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
..-+++|+|||||||||+.+.++..+. +..+-+++..|.+
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~---~~~g~I~~~ed~i 205 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELN---SSERNILTVEDPI 205 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC---CTTSCEEEEESSC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcC---CCCCEEEEecccc
Confidence 356999999999999999999988753 2234455555655
No 217
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.81 E-value=0.012 Score=56.98 Aligned_cols=37 Identities=32% Similarity=0.247 Sum_probs=29.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+..++|.|++|+||||+++.+...++ ..+..++...+
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~-----~~~~~~~~~~~ 74 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELG-----VNLRVTSGPAI 74 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHT-----CCEEEECTTTC
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEecccc
Confidence 45678899999999999999998874 34566766555
No 218
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.81 E-value=0.0086 Score=62.64 Aligned_cols=43 Identities=23% Similarity=0.291 Sum_probs=35.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 216 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike 216 (477)
.|.+|+++|++||||||++..|+..+. ..+..+.++++|.++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~--~~g~~Vllvd~D~~r~ 139 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQRP 139 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEEECCSSCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEeeccccCc
Confidence 688999999999999999999987753 3345688999998864
No 219
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.79 E-value=0.0041 Score=60.33 Aligned_cols=40 Identities=23% Similarity=0.210 Sum_probs=30.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+...++.|.|||||||||+.+.|+.-+. + .|.+.++.-.+
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~-~G~I~i~g~~i 83 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFYD---A-EGDIKIGGKNV 83 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC---C-EEEEEETTEEG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCC---C-CeEEEECCEEh
Confidence 5678999999999999999999976532 2 45677766554
No 220
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.78 E-value=0.0049 Score=59.70 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=30.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 213 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~ 213 (477)
....+++|+|+|||||||+++.++..... ..+..+.+++.+.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~-~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGT-AMGKKVGLAMLEE 74 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHH-TSCCCEEEEESSS
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHH-HcCCeEEEEeCcC
Confidence 45679999999999999999998876421 1122466777654
No 221
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.78 E-value=0.0075 Score=52.57 Aligned_cols=36 Identities=17% Similarity=0.090 Sum_probs=26.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 176 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 176 IlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
++|.|++|+|||++|+.+..... ..+..++ ++...+
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~~--~~~~~~v-~~~~~~ 62 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFGR--NAQGEFV-YRELTP 62 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSST--TTTSCCE-EEECCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC--ccCCCEE-EECCCC
Confidence 68899999999999999988642 1122345 766554
No 222
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.78 E-value=0.006 Score=60.50 Aligned_cols=42 Identities=21% Similarity=0.312 Sum_probs=34.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 216 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike 216 (477)
|.++++.|++|+||||++..|+..+. ..+....+++.|..+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~--~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK--KKGFKVGLVGADVYRP 139 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH--HTTCCEEEEECCCSSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEecCCCCH
Confidence 89999999999999999999987652 2345688999998754
No 223
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.77 E-value=0.0042 Score=60.39 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=31.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|+|||||||+.+.|+.-. .|..|-+.++.-.+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~---~p~~G~I~~~g~~~ 71 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI---EPTSGDVLYDGERK 71 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS---CCSEEEEEETTEEC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC---CCCCcEEEECCEEC
Confidence 567899999999999999999987543 23445677765444
No 224
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=95.77 E-value=0.0065 Score=58.88 Aligned_cols=32 Identities=28% Similarity=0.290 Sum_probs=26.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCc
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 212 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD 212 (477)
.+|.|+|++||||||+++.|.+.+| +.++...
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g-------~~~~~~~ 33 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYS-------AVKYQLA 33 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSC-------EEECCTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC-------CeEEecC
Confidence 5899999999999999999998764 5666543
No 225
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.77 E-value=0.009 Score=53.12 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 011773 176 LLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 176 IlLaGp~GSGKSTlAr~La~~l 197 (477)
+++.|++|+||||+++.++..+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999998865
No 226
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.76 E-value=0.0077 Score=58.99 Aligned_cols=37 Identities=27% Similarity=0.241 Sum_probs=29.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+.-++|.|++|+||||+|+.++..++ ..++.++...+
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~-----~~~~~~~~~~~ 91 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMS-----ANIKTTAAPMI 91 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTT-----CCEEEEEGGGC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhC-----CCeEEecchhc
Confidence 34579999999999999999998874 35667776655
No 227
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.74 E-value=0.0037 Score=58.82 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=20.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
..++.|.|||||||||+.+.++.-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999998754
No 228
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.74 E-value=0.0039 Score=62.37 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=33.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 216 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike 216 (477)
+...++.|.|+|||||||+.+.|..-+ .|..|.+.++.-.+..
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~---~p~~G~I~i~G~~i~~ 120 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY---DISSGCIRIDGQDISQ 120 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS---CCSEEEEEETTEETTS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC---CCCCcEEEECCEEccc
Confidence 557899999999999999999987654 3445677888766643
No 229
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.74 E-value=0.0096 Score=59.91 Aligned_cols=43 Identities=19% Similarity=0.195 Sum_probs=32.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
..++..|+++|.+|+||||++..|+..+. ..+....+++.|.-
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~--~~g~kV~vi~~Dp~ 118 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLI--ERGHRVAVLAVDPS 118 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEEEEC--
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHH--hCCCceEEEecCCC
Confidence 35678899999999999999999987652 33456788888843
No 230
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.74 E-value=0.009 Score=58.55 Aligned_cols=44 Identities=23% Similarity=0.286 Sum_probs=30.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhcccc----CCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS----GAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~----~~~~~~vvIdaD~I 214 (477)
..|..++|.||+|+||||+++.+...+.-. +.+..++++|+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR 89 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC
Confidence 446788999999999999999998875100 00124566776554
No 231
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.73 E-value=0.0063 Score=61.68 Aligned_cols=35 Identities=26% Similarity=0.507 Sum_probs=28.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 210 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvId 210 (477)
..+++|.||+||||||+.+.|...+. +..+.+.|+
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~---~~~g~I~ie 209 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIP---FDQRLITIE 209 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSC---TTSCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC---CCceEEEEC
Confidence 46899999999999999999987653 345666676
No 232
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.73 E-value=0.0036 Score=59.30 Aligned_cols=41 Identities=20% Similarity=0.247 Sum_probs=30.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+...++.|.|||||||||+.+.|..-. .|..|.+.++...+
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~---~p~~G~I~~~g~~~ 73 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYL---KPLKGEIIYNGVPI 73 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS---CCSEEEEEETTEEG
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCeEEEECCEEh
Confidence 456789999999999999999987543 23445677765443
No 233
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.73 E-value=0.0053 Score=60.35 Aligned_cols=41 Identities=22% Similarity=0.137 Sum_probs=31.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|||||||||+.+.|+.-+ .|..|.+.++.-.+
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~---~p~~G~I~~~g~~~ 85 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE---PATSGTVNLFGKMP 85 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS---CCSEEEEEETTBCC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC---CCCCeEEEECCEEc
Confidence 456799999999999999999997654 23446677765444
No 234
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.69 E-value=0.0023 Score=60.60 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=28.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
|.-+++.||||+||||+++.++..++ ..+..++...+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~-----~~~~~v~~~~~ 80 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAH-----VPFFSMGGSSF 80 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHT-----CCCCCCCSCTT
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhC-----CCEEEechHHH
Confidence 33478999999999999999999874 23455665554
No 235
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.66 E-value=0.0047 Score=59.73 Aligned_cols=40 Identities=25% Similarity=0.382 Sum_probs=30.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|||||||||+.+.|+.-+ .+. |-+.++.-.+
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~---~p~-G~i~~~g~~~ 63 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMT---SGK-GSIQFAGQPL 63 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS---CCE-EEEEETTEEG
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC---CCC-eEEEECCEEC
Confidence 456799999999999999999987654 234 5677765444
No 236
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.65 E-value=0.009 Score=61.07 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=32.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
...+++|.|||||||||++..++.... ..+..+.+|++...
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s 100 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHA 100 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccc
Confidence 468999999999999999999887642 12345789998875
No 237
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.64 E-value=0.0039 Score=57.09 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
.++.|.|++||||||+++.|...+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478889999999999999998765
No 238
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.61 E-value=0.0045 Score=59.92 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=23.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+...++.|.|||||||||+.+.|+.-.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456799999999999999999987654
No 239
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.59 E-value=0.01 Score=59.72 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=32.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccC-----CCCCeEEEeCcccc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSG-----AATNAVVVEADAFK 215 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~-----~~~~~vvIdaD~Ik 215 (477)
...|..++|.||||+|||++++.++..+.-.. +.-.+++||+-.+.
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 45688889999999999999999988863100 01135677766553
No 240
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.58 E-value=0.0094 Score=59.76 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=29.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+.-+++.||||+||||+|+.++..++ ..++.++...+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~-----~~~~~~~~~~~ 108 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD-----IPIAISDATSL 108 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEGGGC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC-----CCEEEecchhh
Confidence 44578999999999999999999874 34566665554
No 241
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.56 E-value=0.0057 Score=56.71 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l 197 (477)
++.|.|+|||||||+.+.|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 57899999999999999988765
No 242
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.56 E-value=0.0076 Score=53.46 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
|-+.+|.|||||||||+..++.-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999987654
No 243
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.55 E-value=0.0071 Score=55.83 Aligned_cols=42 Identities=21% Similarity=0.315 Sum_probs=29.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
...+++++|+||+||||++..++.+. ....+..+.+++.+.-
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E~~ 70 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLEER 70 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSSC
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeecccCC
Confidence 46799999999999999999876432 0111345677777654
No 244
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.52 E-value=0.0083 Score=60.79 Aligned_cols=41 Identities=20% Similarity=0.205 Sum_probs=32.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
...+++|.|+|||||||++..++.... ..+..+.+|+.+.-
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~ 100 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHA 100 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCC
Confidence 467999999999999999999876531 23456889998864
No 245
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.51 E-value=0.007 Score=60.62 Aligned_cols=27 Identities=19% Similarity=0.141 Sum_probs=23.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+...++.|.|||||||||+++.|..-+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 456799999999999999999998764
No 246
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.50 E-value=0.01 Score=59.32 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=28.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 213 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~ 213 (477)
.|.-+++.||||+||||+|+.++..++ ..++.++.-.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~-----~~~~~~~~~~ 86 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLD-----VPFTMADATT 86 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC-----CCEEEechHH
Confidence 355688899999999999999999874 2355555433
No 247
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.48 E-value=0.0082 Score=61.24 Aligned_cols=27 Identities=33% Similarity=0.506 Sum_probs=23.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+...+++|.|||||||||+.+.|+..+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 446799999999999999999998765
No 248
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.44 E-value=0.0077 Score=60.45 Aligned_cols=35 Identities=29% Similarity=0.432 Sum_probs=27.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 210 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvId 210 (477)
..++++.|+|||||||+.+.|..... +..+.+.++
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~---~~~g~i~i~ 205 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIP---KEERIISIE 205 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSC---TTSCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc---CCCcEEEEC
Confidence 45899999999999999999987653 344566665
No 249
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.44 E-value=0.0088 Score=60.93 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
.-+++++||+||||||+.+.++..+
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3499999999999999999987765
No 250
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.43 E-value=0.0085 Score=55.01 Aligned_cols=25 Identities=28% Similarity=0.301 Sum_probs=21.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
..+++++|++||||||++..++.++
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999997776654
No 251
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.43 E-value=0.0072 Score=58.17 Aligned_cols=42 Identities=17% Similarity=0.160 Sum_probs=30.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccC---------CCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSG---------AATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~---------~~~~~vvIdaD~I 214 (477)
...+++|.|+|||||||++..++.... .+ ....+.+++..+-
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~-~g~~~~g~~~~~~~~v~~~~~e~~ 79 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA-GGPDLLEVGELPTGPVIYLPAEDP 79 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH-TCCCTTCCCCCCCCCEEEEESSSC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh-cCCCcCCCccCCCccEEEEECCCC
Confidence 467999999999999999999886432 11 0234667876654
No 252
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.42 E-value=0.0087 Score=56.10 Aligned_cols=45 Identities=18% Similarity=0.300 Sum_probs=28.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhcc-cc--CCC-CCeEEEeCcccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESF-WS--GAA-TNAVVVEADAFK 215 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~-~~--~~~-~~~vvIdaD~Ik 215 (477)
.+|.+++++|+||||||+++..+..... +. ..+ ....+.+.|.+.
T Consensus 3 ~~~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~ 51 (199)
T 2r2a_A 3 AMAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLK 51 (199)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBC
T ss_pred cceeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCcc
Confidence 4577999999999999999988644321 00 111 223457777663
No 253
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.40 E-value=0.0073 Score=59.32 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=22.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+.|. +++.||+|+||||+++.++..+
T Consensus 35 ~~~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 35 DLPH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CCCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred CCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence 4466 8999999999999999999864
No 254
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.40 E-value=0.017 Score=56.94 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=28.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCC-CCCeEEEeCccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGA-ATNAVVVEADAF 214 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~-~~~~vvIdaD~I 214 (477)
.++|.||+|+||||+++.++..+. .. +..++++++...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK--DKTTARFVYINGFIY 84 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT--TSCCCEEEEEETTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh--hhcCeeEEEEeCccC
Confidence 889999999999999999998763 11 124567775443
No 255
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.37 E-value=0.0091 Score=61.38 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=33.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
+...++.|.|||||||||+.+.|..-. .|..|-+.++..++.
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~---~p~~G~I~i~G~~i~ 93 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE---RPTEGSVLVDGQELT 93 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS---CCSEEEEEETTEECS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC---CCCceEEEECCEECC
Confidence 567899999999999999999987643 344567788776663
No 256
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.35 E-value=0.012 Score=61.18 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=29.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.|.-++|.||||+||||+|+.++..+. +..+..|+...+
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~----~~~~~~v~~~~l 204 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEAN----NSTFFSISSSDL 204 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCC----SSEEEEECCC--
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC----CCCEEEEeHHHH
Confidence 457889999999999999999999862 234566766655
No 257
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.34 E-value=0.011 Score=57.83 Aligned_cols=43 Identities=19% Similarity=0.233 Sum_probs=29.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCC-CCCeEEEeCcc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA-ATNAVVVEADA 213 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~-~~~~vvIdaD~ 213 (477)
..+..++|.|++|+||||+++.++..+.-... +..++++++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 45678999999999999999999886520000 12456676543
No 258
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.34 E-value=0.018 Score=55.21 Aligned_cols=26 Identities=19% Similarity=0.093 Sum_probs=22.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
...+++.||||+||||+|..++..+.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999998863
No 259
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.33 E-value=0.0092 Score=61.13 Aligned_cols=41 Identities=17% Similarity=0.328 Sum_probs=31.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....++.|.|||||||||+.+.|+.-. .|..|-+.++...+
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~---~p~~G~I~i~G~~i 68 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE---QPDSGEISLSGKTI 68 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS---CCSEEEEEETTEEE
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC---CCCCcEEEECCEEC
Confidence 556899999999999999999998643 34445667765444
No 260
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.33 E-value=0.013 Score=56.15 Aligned_cols=37 Identities=22% Similarity=0.143 Sum_probs=28.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEE
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV 209 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvI 209 (477)
....+++++|+|||||||.+..++.++. +.+..+.++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~--~~g~kVli~ 46 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLE--YADVKYLVF 46 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHH--HTTCCEEEE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEE
Confidence 4568999999999999999998887753 334456666
No 261
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.31 E-value=0.0076 Score=59.67 Aligned_cols=27 Identities=41% Similarity=0.548 Sum_probs=23.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
....++.|.|+|||||||+.+.|..-+
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 567899999999999999999987643
No 262
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.30 E-value=0.016 Score=54.98 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=29.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.-++|.|++|+|||++|+.+...+. .....++.||...+
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~--~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSS--RWQGPFISLNCAAL 68 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTST--TTTSCEEEEEGGGS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcC--ccCCCeEEEecCCC
Confidence 3467899999999999999998753 11234777887766
No 263
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.29 E-value=0.014 Score=61.95 Aligned_cols=38 Identities=21% Similarity=0.335 Sum_probs=30.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.|.-++|.||||+||||+++.++...+ ..+..++..++
T Consensus 48 ~p~gvLL~GppGtGKT~Laraia~~~~-----~~f~~is~~~~ 85 (476)
T 2ce7_A 48 MPKGILLVGPPGTGKTLLARAVAGEAN-----VPFFHISGSDF 85 (476)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHHHT-----CCEEEEEGGGT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC-----CCeeeCCHHHH
Confidence 355588999999999999999998874 34666776555
No 264
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.27 E-value=0.013 Score=60.10 Aligned_cols=26 Identities=12% Similarity=-0.052 Sum_probs=22.8
Q ss_pred EEEEEecCHHHHHHHHHHhhhccccc
Q 011773 335 ELVGVVCDAYLAVVRGIRRAIMMKRA 360 (477)
Q Consensus 335 ~lv~V~~d~elav~Rv~~R~~~gGr~ 360 (477)
.+++|+||++++++|.++|....|..
T Consensus 291 ~~i~Vdad~ev~~~Rli~R~~~~Gl~ 316 (359)
T 2ga8_A 291 LVYKIDIDYEATEERVAKRHLQSGLV 316 (359)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHTTSC
T ss_pred EEEEEECCHHHHHHHHHHhhhccCCC
Confidence 45899999999999999999877773
No 265
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.25 E-value=0.0075 Score=58.84 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=29.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
. ..++.|.|||||||||+.+.|+.-. |..+-+.++.-.+
T Consensus 29 ~-Ge~~~i~G~NGsGKSTLlk~l~Gl~----p~~G~I~~~g~~~ 67 (263)
T 2pjz_A 29 N-GEKVIILGPNGSGKTTLLRAISGLL----PYSGNIFINGMEV 67 (263)
T ss_dssp C-SSEEEEECCTTSSHHHHHHHHTTSS----CCEEEEEETTEEG
T ss_pred C-CEEEEEECCCCCCHHHHHHHHhCCC----CCCcEEEECCEEC
Confidence 5 7799999999999999999987542 3445677765433
No 266
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.25 E-value=0.014 Score=57.62 Aligned_cols=27 Identities=33% Similarity=0.283 Sum_probs=23.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
..|..++|.||+|+||||+++.++..+
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 446789999999999999999998865
No 267
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.24 E-value=0.018 Score=56.58 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=23.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
.|..+++.|++|+||||+++.++..+.
T Consensus 37 ~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 37 IHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 355889999999999999999998874
No 268
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.24 E-value=0.012 Score=61.82 Aligned_cols=38 Identities=32% Similarity=0.465 Sum_probs=29.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.|.-|+|.||||+||||+++.|+..++ .....+++..+
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~-----~~~~~v~~~~~ 86 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLAN-----APFIKVEATKF 86 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEGGGG
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcC-----CCceeecchhh
Confidence 355689999999999999999999975 34556665454
No 269
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.23 E-value=0.012 Score=59.20 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=22.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
...+.|.|+|||||||+++.|+..+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5788999999999999999998875
No 270
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.20 E-value=0.0097 Score=60.58 Aligned_cols=41 Identities=20% Similarity=0.262 Sum_probs=31.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+...++.|.|||||||||+.+.|+.-. .|..|-+.++.-.+
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~---~p~~G~I~~~g~~i 64 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH---VPDSGRILLDGKDV 64 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS---CCSEEEEEETTEEC
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC---CCCCcEEEECCEEC
Confidence 556899999999999999999998543 34456777776555
No 271
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.20 E-value=0.011 Score=61.03 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=32.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+...++.|.|||||||||+.+.|+.-. .+..|-+.++...+
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~---~p~~G~I~i~G~~~ 67 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE---TITSGDLFIGEKRM 67 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS---CCSEEEEEETTEEC
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC---CCCCeEEEECCEEC
Confidence 557899999999999999999998643 34456677776555
No 272
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.18 E-value=0.01 Score=58.64 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=23.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
+..++|.||||+||||+++.++..++
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 57899999999999999999999874
No 273
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.18 E-value=0.013 Score=59.79 Aligned_cols=41 Identities=12% Similarity=0.207 Sum_probs=32.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
...+++|+|+|||||||++..++.... ..+..+.+|+++.-
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s 102 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHA 102 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCC
Confidence 467999999999999999999887531 22346889998654
No 274
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=95.17 E-value=0.024 Score=53.77 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=24.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
..+.+|+|+|.+||||+|+|+.+.+.++
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g 36 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLG 36 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcC
Confidence 4568999999999999999999988763
No 275
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.15 E-value=0.012 Score=62.82 Aligned_cols=40 Identities=20% Similarity=0.257 Sum_probs=28.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEE-eCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvI-daD~I 214 (477)
.+..++++||+||||||+.+.|..... +..+.+.| +++++
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~---~~~giitied~~E~ 299 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIP---PDAKVVSIEDTREI 299 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSC---TTCCEEEEESSCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC---CCCCEEEEcCcccc
Confidence 355799999999999999999987653 33455555 34444
No 276
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.15 E-value=0.0092 Score=58.24 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l 197 (477)
.+.+.|+|||||||+.+.|....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998764
No 277
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.15 E-value=0.012 Score=60.20 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=31.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+...++.|.|||||||||+.+.|+.-. .|..|-+.++...+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~---~p~~G~I~i~g~~i 67 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY---KPTSGEIYFDDVLV 67 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS---CCSEEEEEETTEEC
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC---CCCccEEEECCEEC
Confidence 557899999999999999999998543 33445677765444
No 278
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.12 E-value=0.012 Score=60.22 Aligned_cols=41 Identities=20% Similarity=0.288 Sum_probs=31.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+...++.|.|||||||||+.+.|+.-. .+..|-+.++...+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~---~p~~G~I~i~g~~i 67 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY---KPTSGKIYFDEKDV 67 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS---CCSEEEEEETTEEC
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC---CCCceEEEECCEEC
Confidence 557899999999999999999998643 34446677766544
No 279
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.12 E-value=0.016 Score=58.49 Aligned_cols=44 Identities=11% Similarity=0.203 Sum_probs=31.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhcc--cc-C-CCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESF--WS-G-AATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~--~~-~-~~~~~vvIdaD~I 214 (477)
+...++.|.|+|||||||++..++.... .. + .++.+++|+....
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence 3578999999999999999999987641 00 0 0123588887654
No 280
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.11 E-value=0.017 Score=57.33 Aligned_cols=42 Identities=17% Similarity=0.306 Sum_probs=31.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhcc----ccCCCCCeEEEeCcc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESF----WSGAATNAVVVEADA 213 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~----~~~~~~~~vvIdaD~ 213 (477)
...+++|+|+|||||||++..++...- |.+.+..+.+|+.+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 457999999999999999999987531 001134678898876
No 281
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.02 E-value=0.022 Score=57.14 Aligned_cols=43 Identities=9% Similarity=0.139 Sum_probs=32.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccc----cCCCCCeEEEeCcc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFW----SGAATNAVVVEADA 213 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~----~~~~~~~vvIdaD~ 213 (477)
+...+++|+|+|||||||++..++...-. .+.+.++.+|+.+.
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 35689999999999999999999875210 01234678998876
No 282
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.01 E-value=0.014 Score=60.04 Aligned_cols=41 Identities=20% Similarity=0.278 Sum_probs=31.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+...++.|.|||||||||+.+.|+.-. .+..|-+.++...+
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~---~p~~G~I~i~g~~i 75 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE---EPTEGRIYFGDRDV 75 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS---CCSEEEEEETTEEC
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC---CCCceEEEECCEEC
Confidence 567899999999999999999998543 23445677765444
No 283
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.99 E-value=0.012 Score=60.14 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=30.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+...++.|.|||||||||+.+.|+.-. .+..+-+.++...+
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~---~p~~G~I~i~g~~i 79 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE---RPTKGDVWIGGKRV 79 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS---CCSEEEEEETTEEC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC---CCCccEEEECCEEC
Confidence 456799999999999999999998543 34445677765444
No 284
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.99 E-value=0.04 Score=58.36 Aligned_cols=39 Identities=18% Similarity=0.335 Sum_probs=29.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
..|.-++|.|+||+|||++|+.++..++ ..++.||...+
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~~-----~~fv~vn~~~l 274 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANETG-----AFFFLINGPEI 274 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHCS-----SEEEEEEHHHH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHhC-----CCEEEEEchHh
Confidence 3456789999999999999999998863 34566665444
No 285
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.99 E-value=0.019 Score=57.71 Aligned_cols=42 Identities=21% Similarity=0.211 Sum_probs=29.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 213 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~ 213 (477)
.....++.|.|+|||||||+.+.|...+.. .+....+++.|.
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~--~~g~v~i~~~d~ 93 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTA--AGHKVAVLAVDP 93 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEEEECG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhh--CCCEEEEEEEcC
Confidence 355789999999999999999999865321 122455555554
No 286
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.98 E-value=0.029 Score=51.08 Aligned_cols=40 Identities=15% Similarity=0.262 Sum_probs=29.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.+..+++.|.+||||||++..|...+. . .....+|+.|..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~--~-~~~~~~i~~d~~ 68 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIG--N-EVKIGAMLGDVV 68 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHT--T-TSCEEEEECSCC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhc--c-CCeEEEEecCCC
Confidence 356788889999999999999988752 1 123566766653
No 287
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.98 E-value=0.014 Score=54.18 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=23.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
.|-+.+|.|+|||||||+..+|.-.++
T Consensus 22 ~~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 22 KEGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 367999999999999999999876654
No 288
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.92 E-value=0.021 Score=60.86 Aligned_cols=37 Identities=22% Similarity=0.369 Sum_probs=29.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
|.=++|.||||+||||+++.++...+ .+.+.++..++
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~ 100 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDF 100 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHH
Confidence 44499999999999999999998763 35677776555
No 289
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.92 E-value=0.028 Score=53.89 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 011773 176 LLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 176 IlLaGp~GSGKSTlAr~La~~l 197 (477)
+++.||+|+||||+++.++..+
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 8999999999999999999875
No 290
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.90 E-value=0.017 Score=61.96 Aligned_cols=42 Identities=14% Similarity=0.249 Sum_probs=32.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
+...++.+.|||||||||+.+.|..-+ .|..|.+.+|.-++.
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~---~p~~G~i~~~g~~~~ 408 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFY---DVDSGSICLDGHDVR 408 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCCEEEECCEEhh
Confidence 455789999999999999999998754 345567888765553
No 291
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.90 E-value=0.035 Score=55.92 Aligned_cols=83 Identities=19% Similarity=0.297 Sum_probs=54.6
Q ss_pred hhHHHHhhhhchhhhhhhhhhHHHHHHHHHHHHH-HHhcCCCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHH
Q 011773 117 DFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKA-IRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMK 195 (477)
Q Consensus 117 ~~~~~~~~~~~~~~v~~~~~~~r~~~~l~ee~~~-~~~~~~~~~~~v~~~~~~~~~~P~LIlLaGp~GSGKSTlAr~La~ 195 (477)
..+++++++.++-..+.+....+..+.|..=+.. .+.. .-+=+.. - .-...-+++.|+||+||||++..|..
T Consensus 94 eelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~-----~~~H~~~-v-~~~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 94 EELIEAAKEHETPLITSKIATTQLMSRLTTFLEHELART-----TSLHGVL-V-DVYGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp HHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEE-----EEEESEE-E-EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccc-----eeeeEEE-E-EECCEEEEEEeCCCCCHHHHHHHHHh
Confidence 4467888888888888888888888777653322 2111 1000000 0 12357899999999999999999988
Q ss_pred hccccCCCCCeEEEeCccc
Q 011773 196 ESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 196 ~l~~~~~~~~~vvIdaD~I 214 (477)
+ +..+|+-|..
T Consensus 167 ~--------g~~lv~dD~~ 177 (314)
T 1ko7_A 167 R--------GHRLVADDNV 177 (314)
T ss_dssp T--------TCEEEESSEE
T ss_pred c--------CCceecCCeE
Confidence 6 2466655544
No 292
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.88 E-value=0.01 Score=60.45 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=30.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+...++.|.|||||||||+.+.|+.-. .|..|-+.++...+
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~---~p~~G~I~i~g~~i 69 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD---VPSTGELYFDDRLV 69 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS---CCSEEEEEETTEEE
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC---CCCceEEEECCEEC
Confidence 556899999999999999999998543 23445666665443
No 293
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.86 E-value=0.021 Score=57.20 Aligned_cols=42 Identities=26% Similarity=0.252 Sum_probs=31.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
..+.++.+.|+|||||||+...|+..+. ..+....+++.|..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~--~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLI--REGLKVAVIAVDPS 95 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHH--HTTCCEEEEEECCC
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHH--hcCCeEEEEeecCC
Confidence 4577889999999999999999976542 11345677887765
No 294
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.85 E-value=0.019 Score=61.30 Aligned_cols=38 Identities=24% Similarity=0.296 Sum_probs=29.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.+..+++.||||+||||+++.++..++ .....|+.+.+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~-----~~~~~i~~~~~ 144 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLG-----RKFVRISLGGV 144 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHT-----CEEEEECCCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC-----CCeEEEEeccc
Confidence 466899999999999999999998874 34556666554
No 295
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.76 E-value=0.023 Score=58.94 Aligned_cols=40 Identities=18% Similarity=0.156 Sum_probs=29.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.|.-+++.||||+||||+|+.++..++. ...+..+++-.+
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~---~~~~~~~~~~~~ 101 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGS---KVPFCPMVGSEV 101 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCT---TSCEEEEEGGGG
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCC---CceEEEEeHHHH
Confidence 3567899999999999999999998741 124555655444
No 296
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.71 E-value=0.016 Score=62.26 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=32.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
+...++.+.|||||||||+.+.|..-+ .|..|.+.+|.-++.
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~---~p~~G~i~~~g~~~~ 408 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFY---DIDEGHILMDGHDLR 408 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTT---CCSEEEEEETTEETT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc---CCCCCeEEECCEEcc
Confidence 345689999999999999999997654 344567788775554
No 297
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=94.71 E-value=0.031 Score=55.50 Aligned_cols=40 Identities=20% Similarity=0.386 Sum_probs=33.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 213 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~ 213 (477)
++++++++|-.|+||||+|..++..+ +..+..+.+||+|.
T Consensus 13 m~~i~v~sgKGGvGKTTvA~~LA~~l--A~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 13 KTTFVFIGGKGGVGKTTISAATALWM--ARSGKKTLVISTDP 52 (324)
T ss_dssp BCEEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEECCS
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHH--HHCCCcEEEEeCCC
Confidence 47999999999999999999988765 34456789999997
No 298
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.70 E-value=0.015 Score=60.49 Aligned_cols=42 Identities=21% Similarity=0.350 Sum_probs=31.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+.-++|.||+|+||||+++.++..+.-..++..+.++++..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~ 171 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 567889999999999999999886521111345678887765
No 299
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=94.68 E-value=0.02 Score=56.88 Aligned_cols=94 Identities=9% Similarity=0.157 Sum_probs=53.0
Q ss_pred ccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc--c--------------cCCCCCeEEE-eCcccccchHH
Q 011773 158 HCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF--W--------------SGAATNAVVV-EADAFKETDVI 220 (477)
Q Consensus 158 ~~~~v~~~~~~~~~~P~LIlLaGp~GSGKSTlAr~La~~l~--~--------------~~~~~~~vvI-daD~Ike~d~i 220 (477)
..|+...+.. ...+++|+|.|| ||+|+.+.|.+.+. + +..|.++.+| +.++|..
T Consensus 92 ~~Ye~V~~~~--~~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~---- 162 (295)
T 1kjw_A 92 LSYETVTQME--VHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEK---- 162 (295)
T ss_dssp CCEEEEEEEE--CCSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHH----
T ss_pred CCcceeeeec--CCCCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHHHHH----
Confidence 4477666542 345678888998 79999999998642 1 1124455666 6555521
Q ss_pred HHHHhcCCCCCchhhHHHHHhHhHHHHHHHHHHHHHhCCCcEEEeCC
Q 011773 221 YRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGT 267 (477)
Q Consensus 221 rk~Ls~~g~p~d~~~~ae~v~~~a~~la~~li~~aL~~G~sVIiDgT 267 (477)
.+.. | .+...++. |...+......+...+++|+++|+|..
T Consensus 163 --~i~~-g---~flE~~~~-~g~~YGt~~~~V~~~~~~G~~vildid 202 (295)
T 1kjw_A 163 --DIQA-H---KFIEAGQY-NSHLYGTSVQSVREVAEQGKHCILDVS 202 (295)
T ss_dssp --HHHT-T---CEEEEEEE-TTEEEEEEHHHHHHHHHTTCEEEECCC
T ss_pred --HHHC-C---CcEEEEEE-cCcEeeeeHHHHHHHHhcCCeEEEEeC
Confidence 1221 1 11111111 211222223457778899999999964
No 300
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.68 E-value=0.033 Score=50.93 Aligned_cols=39 Identities=15% Similarity=0.324 Sum_probs=27.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 213 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~ 213 (477)
.+..|+|.|.+||||||++..+....+ .......|+.|.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~---~~~~~~~i~~d~ 75 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLK---DKYKIACIAGDV 75 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHT---TTCCEEEEEEET
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhc---cCCeEEEEECCC
Confidence 356677779999999999999988753 112345665543
No 301
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.66 E-value=0.028 Score=56.66 Aligned_cols=41 Identities=24% Similarity=0.192 Sum_probs=29.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
...+|.|.|+|||||||+...|...+. ..+..+.++..|..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~--~~~~~v~V~~~dp~ 113 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLT--ERGHKLSVLAVDPS 113 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEECCC-
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhh--hcCCeEEEEeecCC
Confidence 467899999999999999999987531 11234566666543
No 302
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.65 E-value=0.021 Score=58.42 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=32.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
...+++|+|+||+||||++..++.... ..+..+.+|+++.-
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~--~~g~~vlyi~~E~s 113 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQ--KAGGTCAFIDAEHA 113 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHH--HCCCeEEEEECCCC
Confidence 456899999999999999999877541 22346899999864
No 303
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.65 E-value=0.028 Score=55.61 Aligned_cols=41 Identities=10% Similarity=0.080 Sum_probs=31.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 213 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~ 213 (477)
....+++|+|+||+||||++..++.... ..+..+.+++...
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a--~~g~~vl~~slE~ 106 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMS--DNDDVVNLHSLEM 106 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHH--TTTCEEEEEESSS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH--HcCCeEEEEECCC
Confidence 4467999999999999999999987642 2234577887764
No 304
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.64 E-value=0.015 Score=59.74 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=30.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+...++.|.|||||||||+.+.|+.-. .+..|-+.++...+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~---~p~~G~I~i~g~~~ 67 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLE---EPSRGQIYIGDKLV 67 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS---CCSEEEEEETTEEE
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCC---CCCccEEEECCEEC
Confidence 456799999999999999999998543 23445666765443
No 305
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.61 E-value=0.022 Score=50.03 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
.++.-|++.|++|+||||+...|...
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34678999999999999999999864
No 306
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.55 E-value=0.021 Score=60.48 Aligned_cols=42 Identities=17% Similarity=0.127 Sum_probs=30.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHH-HhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIM-KESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La-~~l~~~~~~~~~vvIdaD~I 214 (477)
+...+++|.|+|||||||+++.++ ..+ ..++.+.++|+..+.
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl--~~~~~g~i~v~g~~~ 79 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGI--IEFDEPGVFVTFEET 79 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH--HHHCCCEEEEESSSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH--HhCCCCEEEEEEeCC
Confidence 356799999999999999999952 222 112356788887653
No 307
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.54 E-value=0.018 Score=59.42 Aligned_cols=41 Identities=17% Similarity=0.271 Sum_probs=31.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
+...++.|.|||||||||+.+.|+.-.. ..|-+.++...+.
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~----~~G~I~i~G~~i~ 85 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLLN----TEGEIQIDGVSWD 85 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCSE----EEEEEEESSCBTT
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCCC----CCeEEEECCEECC
Confidence 5678999999999999999999985431 2356777766553
No 308
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.48 E-value=0.023 Score=51.15 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
...++|.|++||||||+.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4678999999999999999998754
No 309
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.47 E-value=0.019 Score=56.02 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 011773 176 LLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 176 IlLaGp~GSGKSTlAr~La~~l 197 (477)
+++.||||+||||+++.++..+
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998875
No 310
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.47 E-value=0.02 Score=61.34 Aligned_cols=28 Identities=36% Similarity=0.420 Sum_probs=24.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
.+...++.|.|||||||||+.+.|+..+
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3556899999999999999999997643
No 311
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=94.45 E-value=0.022 Score=56.82 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=22.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
.|-+.+|.|||||||||+..++.-.+.
T Consensus 22 ~~~~~~i~G~NGsGKS~lleAi~~~l~ 48 (339)
T 3qkt_A 22 KEGINLIIGQNGSGKSSLLDAILVGLY 48 (339)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 478999999999999999999865443
No 312
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.45 E-value=0.014 Score=52.56 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=22.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHH
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMK 195 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~ 195 (477)
-.....++|.|++||||||+.+.|..
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 35567899999999999999998764
No 313
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.44 E-value=0.024 Score=55.47 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=25.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 211 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIda 211 (477)
-+++.||||+||||+++.++..++ ..+..++.
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~-----~~~~~i~~ 79 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMD-----LDFHRIQF 79 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTT-----CCEEEEEC
T ss_pred eEEEECCCCCcHHHHHHHHHHHhC-----CCeEEEec
Confidence 477899999999999999999874 24555553
No 314
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.43 E-value=0.017 Score=64.64 Aligned_cols=39 Identities=18% Similarity=0.335 Sum_probs=30.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
..|.-++|.||||+||||+++.++..++ ...+.|+..++
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l~-----~~~i~v~~~~l 274 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANETG-----AFFFLINGPEI 274 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTTT-----CEEEEEEHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcC-----CcEEEEEchHh
Confidence 4577899999999999999999998864 24555654433
No 315
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.42 E-value=0.034 Score=53.67 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=28.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+++|.|++|+||||+++.+..... ....+++....
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~-----~~~~~~~~~~~ 66 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELN-----LPYIYLDLRKF 66 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT-----CCEEEEEGGGG
T ss_pred cEEEECCCCCCHHHHHHHHHHhcC-----CCEEEEEchhh
Confidence 899999999999999999998763 24678887643
No 316
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.42 E-value=0.013 Score=63.02 Aligned_cols=43 Identities=19% Similarity=0.300 Sum_probs=33.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 216 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike 216 (477)
+...++.+.|||||||||+.+.+..-+ .|..|.+.+|.-+++.
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~---~p~~G~i~~~g~~~~~ 407 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFY---DVTSGQILIDGHNIKD 407 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSS---CCSEEEEEETTEEGGG
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC---CCCCcEEEECCEEhhh
Confidence 345789999999999999999987654 3445678888766643
No 317
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=94.41 E-value=0.41 Score=51.03 Aligned_cols=157 Identities=12% Similarity=0.079 Sum_probs=85.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHH
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 250 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~ 250 (477)
+.|++|++-|.-||||+|..+.|.+.+. ..++.++.... |.+. +..|. .++.
T Consensus 298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ld----prg~~V~~~~~----------------Pt~~----E~~~~----yl~R 349 (500)
T 3czp_A 298 QHSLVAVFEGNDAAGKGGAIRRVTDALD----PRQYHIVPIAA----------------PTEE----ERAQP----YLWR 349 (500)
T ss_dssp GCEEEEEEEESTTSCHHHHHHHHHTTSC----GGGCEEEECCS----------------CCHH----HHTSC----TTHH
T ss_pred CCCEEEEEeccCCCCHHHHHHHHHHhcC----ccCCeEEEeCC----------------CChh----hhcch----HHHH
Confidence 5799999999999999999999998874 22344442111 2110 00010 0111
Q ss_pred HHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHH-hhhccchhhHhhhhhhhccC
Q 011773 251 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWE-QVKEGEEDYQQKENRQVFSR 329 (477)
Q Consensus 251 li~~aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~-~v~~~~~~~~~~~~~~~~~~ 329 (477)
.....=..|.-+|+|-+.-..-.++.+. |...+.-|. .+... ...++....
T Consensus 350 ~~~~lP~~G~i~IfDRswY~~~~v~rv~----------------------g~~~~~~~~~~~~~i------~~FE~~L~~ 401 (500)
T 3czp_A 350 FWRHIPARRQFTIFDRSWYGRVLVERIE----------------------GFCAPADWLRAYGEI------NDFEEQLSE 401 (500)
T ss_dssp HHTTCCCTTCEEEEESCGGGGGTHHHHH----------------------TSSCHHHHHHHHHHH------HHHHHHHHH
T ss_pred HHHhCCCCCeEEEEeCcchhhHHHHHHh----------------------cCCCHHHHHHHHHHH------HHHHHHHhh
Confidence 2222335799999996654433222211 111223232 22211 011122456
Q ss_pred CCceEEEEEEecCHHHHHHHHHHhhhcccc---ccchh-hhhhHHHHHHHhHHHhhcc
Q 011773 330 KPYRIELVGVVCDAYLAVVRGIRRAIMMKR---AVRVN-SQLKSHKRFANAFRNYCEL 383 (477)
Q Consensus 330 ~pY~I~lv~V~~d~elav~Rv~~R~~~gGr---~Vp~~-~ql~~~~rf~~~~~~y~~l 383 (477)
.|+.+..++++.+++.+..|...|-..-.. .-|.+ .....+..+......+...
T Consensus 402 ~g~~i~Kf~L~is~eeQ~~R~~~R~~~p~k~Wk~s~~D~~~~~~w~~y~~a~~~~l~~ 459 (500)
T 3czp_A 402 YGIIVVKFWLAIDKQTQMERFKEREKTPYKRYKITEEDWRNRDKWDQYVDAVGDMVDR 459 (500)
T ss_dssp HTEEEEEEEEECCHHHHHHHHHHHHHSSCTTSCCCSSTTTGGGGHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEECCHHHHHHHHHHHhcCCcccCCCCHHHHHHHHhHHHHHHHHHHHHHH
Confidence 788888899999999999999999753222 11212 1234455555555554443
No 318
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.41 E-value=0.03 Score=52.16 Aligned_cols=38 Identities=21% Similarity=0.134 Sum_probs=28.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 210 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvId 210 (477)
....++++.|++||||||.+..++.++. +.+..+.++.
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~--~~g~kV~v~k 43 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAK--IAKQKIQVFK 43 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH--HCCCEEEEEE
Confidence 4468999999999999999999888762 3344556653
No 319
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.40 E-value=0.021 Score=51.38 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
..-++|.|++||||||+.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999875
No 320
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.38 E-value=0.035 Score=54.54 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=22.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
...+++|+|+|||||||++..++..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999865
No 321
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.37 E-value=0.044 Score=55.25 Aligned_cols=42 Identities=21% Similarity=0.365 Sum_probs=35.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 213 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~ 213 (477)
.+.+++++++|-.|+||||++..++..+ +..+..+.+||+|.
T Consensus 13 ~~~~~i~~~sgkGGvGKTt~a~~lA~~l--a~~g~~vllid~D~ 54 (334)
T 3iqw_A 13 QRSLRWIFVGGKGGVGKTTTSCSLAIQL--AKVRRSVLLLSTDP 54 (334)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHH--TTSSSCEEEEECCS
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHH--HhCCCcEEEEECCC
Confidence 3457899999999999999999998875 45567789999993
No 322
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=94.34 E-value=0.037 Score=55.70 Aligned_cols=42 Identities=21% Similarity=0.318 Sum_probs=34.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 213 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~ 213 (477)
..++++++++|-.|+||||++..++..+ +..+..+.+||+|.
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~l--A~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYL--AEKGLKVVIVSTDP 64 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHH--HHSSCCEEEEECCT
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHH--HHCCCeEEEEeCCC
Confidence 3567899999999999999999988765 34456789999997
No 323
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=94.32 E-value=0.027 Score=56.76 Aligned_cols=85 Identities=18% Similarity=0.185 Sum_probs=52.1
Q ss_pred hhhhHHHHhhhhchhhhhhhhhhHHHHHHHHHHHHH-HHhcCCCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHH
Q 011773 115 LKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKA-IRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDI 193 (477)
Q Consensus 115 ~~~~~~~~~~~~~~~~v~~~~~~~r~~~~l~ee~~~-~~~~~~~~~~~v~~~~~~~~~~P~LIlLaGp~GSGKSTlAr~L 193 (477)
.-..+++++.+.++--.+.++...++...|..=+.. .+.. ..+=+.. -.-...-++++|+||+||||+|..|
T Consensus 95 pp~elie~A~e~~ipLl~T~~~t~~~~~~L~~~l~~~la~~-----~~~H~~~--v~~~g~gvli~G~sG~GKStlal~l 167 (312)
T 1knx_A 95 DPTVLLQVNQTYQVPILKTDFFSTELSFTVETYINEQFATV-----AQIHGVL--LEVFGVGVLLTGRSGIGKSECALDL 167 (312)
T ss_dssp CCHHHHHHGGGTCCCEEEESSCGGGGTTTHHHHHHHHTCCC-----EEEEEEE--EEETTEEEEEEESSSSSHHHHHHHH
T ss_pred CCHHHHHHHHHcCCEEEEeCccHHHHHHHHHHHHHHHhhhc-----ceeEEEE--EEECCEEEEEEcCCCCCHHHHHHHH
Confidence 344677888887777777777666666655442211 1111 1110100 0234678999999999999999999
Q ss_pred HHhccccCCCCCeEEEeCccc
Q 011773 194 MKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 194 a~~l~~~~~~~~~vvIdaD~I 214 (477)
..+ ++.+|+=|..
T Consensus 168 ~~~--------G~~lv~DD~v 180 (312)
T 1knx_A 168 INK--------NHLFVGDDAI 180 (312)
T ss_dssp HTT--------TCEEEEEEEE
T ss_pred HHc--------CCEEEeCCEE
Confidence 875 3566655544
No 324
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.30 E-value=0.027 Score=49.16 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
+..+++.|++|+||||+...+...
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999754
No 325
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.28 E-value=0.017 Score=62.27 Aligned_cols=43 Identities=16% Similarity=0.326 Sum_probs=33.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 216 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike 216 (477)
+...++.+.|||||||||+.+.|..-+ .|..|-+.+|.-+++.
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~---~p~~G~i~~~g~~i~~ 421 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFY---DVDRGQILVDGIDIRK 421 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSS---CCSEEEEEETTEEGGG
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCc---CCCCeEEEECCEEhhh
Confidence 455799999999999999999997654 3445677888766643
No 326
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.25 E-value=0.017 Score=62.22 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=31.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
...++.+.|||||||||+.+.|..-+ .|..|.+.+|.-++.
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~---~p~~G~i~~~g~~i~ 409 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLY---DPASGTISLDGHDIR 409 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSS---CCSEEEEEETTEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc---CCCCcEEEECCEEhh
Confidence 45689999999999999999997654 344567788776554
No 327
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.23 E-value=0.039 Score=57.10 Aligned_cols=42 Identities=12% Similarity=0.215 Sum_probs=30.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccc---c-CCCCCeEEEeCcc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFW---S-GAATNAVVVEADA 213 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~---~-~~~~~~vvIdaD~ 213 (477)
...++.|.|+|||||||++..++-..-. . +.+.+.++|+...
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 4579999999999999999987633210 0 1234578898876
No 328
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=94.22 E-value=0.025 Score=57.38 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
+-+.+|.|+|||||||+..++.-.
T Consensus 23 ~g~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 347889999999999999988643
No 329
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.20 E-value=0.029 Score=50.39 Aligned_cols=40 Identities=28% Similarity=0.366 Sum_probs=31.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+++.+.++-.|+||||++..|+..+ +..+..+.+||.|.-
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~l--a~~g~~vlliD~D~~ 41 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATAL--SRSGYNIAVVDTDPQ 41 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHH--HHTTCCEEEEECCTT
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHH--HHCCCeEEEEECCCC
Confidence 4566677889999999999998775 344567899999954
No 330
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.19 E-value=0.031 Score=58.40 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
.-++|.||||+||||+++.++..++
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4678999999999999999999874
No 331
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=94.19 E-value=0.055 Score=50.04 Aligned_cols=41 Identities=15% Similarity=0.136 Sum_probs=32.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCC-CCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGA-ATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~-~~~~vvIdaD~I 214 (477)
+.++.+.++-.|+||||++..|+..+ +.. +..+.+||.|.-
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~l--a~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFAL--SQEPDIHVLAVDISLP 45 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHH--TTSTTCCEEEEECCTT
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHH--HhCcCCCEEEEECCCC
Confidence 34566677778999999999999876 344 667899999965
No 332
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.19 E-value=0.037 Score=53.75 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=32.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+.+++|.++|-.|+||||++..|+..+ +..+..+.+||+|.-
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~L--a~~G~~VlliD~D~~ 80 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAF--SILGKRVLQIGCDPK 80 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEEESSS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHH--HHCCCeEEEEeCCCC
Confidence 456677667999999999999988765 344567899999964
No 333
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.17 E-value=0.014 Score=50.88 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 011773 176 LLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 176 IlLaGp~GSGKSTlAr~La~~l 197 (477)
++|.|++|+|||++|+.+....
T Consensus 30 vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCTT
T ss_pred EEEECCCCccHHHHHHHHHHhC
Confidence 6789999999999999987664
No 334
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=94.15 E-value=0.29 Score=52.27 Aligned_cols=158 Identities=15% Similarity=0.027 Sum_probs=80.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHH
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 249 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~ 249 (477)
.+.|++|++-|.-||||+|.++.|.+.+. ..++.++....= . ..+.. ++. +.
T Consensus 40 ~~~~vlIvfEG~D~AGKg~~Ik~l~~~l~----prg~~V~a~~~P--t---~~E~~---~~y----------------l~ 91 (500)
T 3czp_A 40 ARFPVIILINGIEGAGKGETVKLLNEWMD----PRLIEVQSFLRP--S---DEELE---RPP----------------QW 91 (500)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHSC----GGGEEEEECSSC--C---HHHHT---SCT----------------TH
T ss_pred CCCCEEEEEeCcCCCCHHHHHHHHHHhcC----ccCCeEEEeCCC--C---hhhcc---CCh----------------hh
Confidence 36799999999999999999999999874 233444421111 0 00110 110 11
Q ss_pred HHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHH-hhhccchhhHhhhhhhhcc
Q 011773 250 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWE-QVKEGEEDYQQKENRQVFS 328 (477)
Q Consensus 250 ~li~~aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~-~v~~~~~~~~~~~~~~~~~ 328 (477)
......=..|.-+|+|...-. ..++..+ + |.+.+.-|. .+... ...++...
T Consensus 92 R~~~~lP~~G~IvIfdRSwYs----~~~v~rv---------~---------g~~~~~~~~~~~~~i------~~FE~~L~ 143 (500)
T 3czp_A 92 RFWRRLPPKGRTGIFFGNWYS----QMLYARV---------E---------GHIKEAKLDQAIDAA------ERFERMLC 143 (500)
T ss_dssp HHHHHCCCTTCEEEEESCHHH----HHHHHHH---------T---------TSSCHHHHHHHHHHH------HHHHHHHH
T ss_pred hHHHhCCCCCeEEEEeCchhh----HHHHHHH---------h---------cCCCHHHHHHHHHHH------HHHHHHHh
Confidence 223334457999999965322 2222111 0 112222121 22211 01122346
Q ss_pred CCCceEEEEEEecCHHHHHHHHHHhhhcccc---ccchh-hhhhHHHHHHHhHHHhhcc
Q 011773 329 RKPYRIELVGVVCDAYLAVVRGIRRAIMMKR---AVRVN-SQLKSHKRFANAFRNYCEL 383 (477)
Q Consensus 329 ~~pY~I~lv~V~~d~elav~Rv~~R~~~gGr---~Vp~~-~ql~~~~rf~~~~~~y~~l 383 (477)
..|+.+..++++.+++.+..|...|...-.+ .-|.+ .....+..+......+...
T Consensus 144 ~~g~~i~KffL~is~eeq~kRl~~R~~~p~k~Wk~s~~D~~~~~~~~~Y~~a~e~~l~~ 202 (500)
T 3czp_A 144 DEGALLFKFWFHLSKKQLKERLKALEKDPQHSWKLSPLDWKQSEVYDRFVHYGERVLRR 202 (500)
T ss_dssp HTTCEEEEEEEECCHHHHHHCC-------------CSSCTTSHHHHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEEEECCHHHHHHHHHHHhcCCcccCCCCHHHHHHHHhHHHHHHHHHHHHHh
Confidence 7888888899999999999999998652111 11111 1233455555555555543
No 335
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.12 E-value=0.047 Score=52.95 Aligned_cols=39 Identities=23% Similarity=0.193 Sum_probs=28.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 210 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvId 210 (477)
..+..+.+++|+|||||||.+-.++.+.. +.+..+.++.
T Consensus 16 ~~~g~l~v~~G~MgsGKTT~lL~~~~r~~--~~g~kvli~k 54 (234)
T 2orv_A 16 KTRGQIQVILGPMFSGKSTELMRRVRRFQ--IAQYKCLVIK 54 (234)
T ss_dssp --CCEEEEEECCTTSCHHHHHHHHHHHHH--TTTCCEEEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHHH--HCCCeEEEEe
Confidence 46689999999999999998888777653 3444555554
No 336
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.11 E-value=0.029 Score=53.63 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 011773 176 LLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 176 IlLaGp~GSGKSTlAr~La~~l 197 (477)
+++.||+|+||||+++.++..+
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHh
Confidence 8999999999999999999875
No 337
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.11 E-value=0.021 Score=60.15 Aligned_cols=26 Identities=15% Similarity=0.314 Sum_probs=21.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
...++.|.|||||||||+++.|+.-.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 35678889999999999999987643
No 338
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.10 E-value=0.022 Score=61.41 Aligned_cols=42 Identities=24% Similarity=0.272 Sum_probs=32.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 216 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike 216 (477)
...++.+.|||||||||+.+.|..-+ .|..|.+.+|.-++++
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~---~~~~G~i~i~g~~i~~ 409 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLI---DPERGRVEVDELDVRT 409 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSS---CCSEEEEEESSSBGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc---cCCCcEEEECCEEccc
Confidence 45689999999999999999987654 3445678888766643
No 339
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.09 E-value=0.024 Score=60.59 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=23.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
....++.|.|+|||||||+.+.|...+
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456799999999999999999998654
No 340
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.08 E-value=0.042 Score=55.52 Aligned_cols=37 Identities=16% Similarity=0.270 Sum_probs=27.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCc
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 212 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD 212 (477)
.-++|.|++||||||+++.+..... ..+..+.++|++
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~--~~~~~~~~~D~~ 72 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREY--MQGSRVIIIDPE 72 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEEESS
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHH--HCCCEEEEEeCC
Confidence 3467899999999999999887642 234456777765
No 341
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=94.04 E-value=0.051 Score=54.14 Aligned_cols=42 Identities=21% Similarity=0.335 Sum_probs=34.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+..++++++|-.|+||||++..|+..+ +..+....+||+|.-
T Consensus 17 ~~~~i~v~sgkGGvGKTTva~~LA~~l--A~~G~rVllvD~D~~ 58 (329)
T 2woo_A 17 TSLKWIFVGGKGGVGKTTTSCSLAIQM--SKVRSSVLLISTDPA 58 (329)
T ss_dssp TTCCEEEEECSSSSSHHHHHHHHHHHH--HTSSSCEEEEECCTT
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHH--HHCCCeEEEEECCCC
Confidence 346788999999999999999998775 345667889999964
No 342
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.99 E-value=0.028 Score=55.44 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
..++.+.|+|||||||+.+.|. ..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 5689999999999999999998 54
No 343
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.97 E-value=0.033 Score=53.28 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
|. +++.||+|+||||+++.+++.+
T Consensus 43 ~~-~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 43 PH-MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CC-EEEECSTTSSHHHHHHHHHHHH
T ss_pred Ce-EEEECcCCCCHHHHHHHHHHHh
Confidence 45 8999999999999999998875
No 344
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.94 E-value=0.038 Score=47.71 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=22.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
..+.-|++.|.+|+||||+...+...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567889999999999999999875
No 345
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.92 E-value=0.037 Score=46.71 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
.-|++.|.+||||||+...+....
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 458889999999999999998653
No 346
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=93.89 E-value=0.049 Score=53.61 Aligned_cols=43 Identities=16% Similarity=0.290 Sum_probs=32.1
Q ss_pred CCCEEEEEEcC-CCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 171 RSPVLLLMGGG-MGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 171 ~~P~LIlLaGp-~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
..+.+|+++|+ +|+||||++..|+..+ +..+..+.+||+|.-+
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~l--A~~G~rVLLID~D~r~ 145 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVI--AQSDQKVLFIDADLRR 145 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHH--HHTTCCEEEEECCTTT
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHH--HhCCCcEEEEECCCCC
Confidence 34556666665 8999999999988765 3345678999999753
No 347
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=93.84 E-value=0.042 Score=54.09 Aligned_cols=41 Identities=22% Similarity=0.309 Sum_probs=30.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
+.-++|.|++|+|||++|+.+..... ..+..++.||...+.
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~--~~~~~~v~v~~~~~~ 65 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACSA--RSDRPLVTLNCAALN 65 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHSS--CSSSCCCEEECSSCC
T ss_pred CCcEEEECCCCchHHHHHHHHHHhCc--ccCCCeEEEeCCCCC
Confidence 34477899999999999999988642 122346788877763
No 348
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=93.83 E-value=0.054 Score=52.60 Aligned_cols=42 Identities=24% Similarity=0.350 Sum_probs=31.5
Q ss_pred CCEEEEEEc-CCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 172 SPVLLLMGG-GMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 172 ~P~LIlLaG-p~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
.+.+|+++| -+|+||||++..|+..+ +..+..+.+||+|.-+
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~l--A~~G~rVLLID~D~~~ 123 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAY--AQAGYKTLIVDGDMRK 123 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHH--HHTTCCEEEEECCSSS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHH--HhCCCeEEEEeCCCCC
Confidence 345565555 58999999999988775 3445678999999764
No 349
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.81 E-value=0.043 Score=47.50 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=22.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
.+++.-|++.|.+|+||||+...+...
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345667889999999999999998764
No 350
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.80 E-value=0.019 Score=55.99 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 011773 176 LLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 176 IlLaGp~GSGKSTlAr~La~~l 197 (477)
++|.|++|+||||+|+.++..+
T Consensus 48 vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHS
T ss_pred EEEECCCCccHHHHHHHHHHhC
Confidence 8899999999999999999876
No 351
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.76 E-value=0.039 Score=50.03 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=22.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
..+.-|++.|++|+||||+...|....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345668899999999999999998764
No 352
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.69 E-value=0.066 Score=51.18 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=29.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 210 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvId 210 (477)
....+++++|++||||||.+-.++.++. +.+..+.++.
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~--~~g~kVli~k 63 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQ--FAKQHAIVFK 63 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHH--HTTCCEEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH--HCCCEEEEEE
Confidence 4468999999999999999998887753 3344556653
No 353
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.69 E-value=0.029 Score=58.81 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=21.8
Q ss_pred CCCEE--EEEEcCCCCcHHHHHHHHHHh
Q 011773 171 RSPVL--LLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 171 ~~P~L--IlLaGp~GSGKSTlAr~La~~ 196 (477)
+.+.+ +.|.|+|||||||+.+.|...
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 44567 899999999999999998764
No 354
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.69 E-value=0.035 Score=47.11 Aligned_cols=21 Identities=24% Similarity=0.545 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHh
Q 011773 176 LLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 176 IlLaGp~GSGKSTlAr~La~~ 196 (477)
|++.|++|+||||+...+...
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 677899999999999999865
No 355
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.67 E-value=0.032 Score=59.64 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=23.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
...++.|.|+|||||||+.+.|....
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999999998654
No 356
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.64 E-value=0.038 Score=57.55 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=22.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
.+.++.|.|+|||||||+.+.|...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 3568999999999999999999863
No 357
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.59 E-value=0.045 Score=46.67 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=21.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
.+.=|++.|.+||||||+...+...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 3456889999999999999999865
No 358
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.58 E-value=0.048 Score=46.19 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=21.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+.=|++.|++|+||||+...+....
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568999999999999999988653
No 359
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.54 E-value=0.035 Score=60.49 Aligned_cols=27 Identities=37% Similarity=0.401 Sum_probs=23.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+...++.|.|||||||||+.+.|+..+
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 457899999999999999999998654
No 360
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=93.54 E-value=0.058 Score=51.97 Aligned_cols=34 Identities=24% Similarity=0.442 Sum_probs=27.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.+++|.|+.|+||||+++.+.... +..+++.+..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~-------~~~~~~~~~~ 65 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNER-------PGILIDCREL 65 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHS-------SEEEEEHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHc-------CcEEEEeecc
Confidence 488999999999999999999875 2677876543
No 361
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.50 E-value=0.045 Score=47.32 Aligned_cols=26 Identities=15% Similarity=0.482 Sum_probs=21.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
+.+.-|++.|++||||||+...+...
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 34567899999999999999998765
No 362
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.48 E-value=0.036 Score=60.32 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=23.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
...++.|.|||||||||+.+.|...+
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 46799999999999999999998654
No 363
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=93.48 E-value=0.032 Score=56.58 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=25.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
.++.+|.+-|+-||||||+++.|++.+.
T Consensus 5 ~~~~fI~~EG~dGaGKTT~~~~La~~L~ 32 (334)
T 1p6x_A 5 VTIVRIYLDGVYGIGKSTTGRVMASAAS 32 (334)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3468999999999999999999999874
No 364
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.47 E-value=0.042 Score=54.38 Aligned_cols=41 Identities=24% Similarity=0.322 Sum_probs=29.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+.-++|.||+|+|||+++..++..+. ...+..+.++++..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~-~~~g~~v~~~~~~~l 192 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS-EKKGVSTTLLHFPSF 192 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH-HHSCCCEEEEEHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH-HhcCCcEEEEEHHHH
Confidence 45788899999999999999987642 012234666766554
No 365
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.45 E-value=0.055 Score=54.89 Aligned_cols=42 Identities=12% Similarity=0.301 Sum_probs=31.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....+++|+|+||+|||||+..++...- ..+..+.+++.+.=
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a--~~g~~Vl~fSlEms 85 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSAL--NDDRGVAVFSLEMS 85 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHH--HTTCEEEEEESSSC
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH--HcCCeEEEEeCCCC
Confidence 3457999999999999999999887642 12345678877654
No 366
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.44 E-value=0.06 Score=46.13 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=22.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
+++.-|++.|.+|+||||+...+...
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 44667899999999999999999764
No 367
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.44 E-value=0.029 Score=55.49 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHH
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMK 195 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~ 195 (477)
|-+.+|.|+|||||||+..+|.-
T Consensus 24 ~g~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 24 DRVTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp SSEEEEECCTTTCSTHHHHHHHH
T ss_pred CCcEEEECCCCCcHHHHHHHHHH
Confidence 44999999999999999999874
No 368
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.43 E-value=0.054 Score=45.92 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=20.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
+.=|++.|.+|+||||+...+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999999865
No 369
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=93.42 E-value=0.039 Score=54.88 Aligned_cols=94 Identities=10% Similarity=0.161 Sum_probs=48.6
Q ss_pred ccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc--c--------------cCCCCCeEEE-eCcccccchHH
Q 011773 158 HCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF--W--------------SGAATNAVVV-EADAFKETDVI 220 (477)
Q Consensus 158 ~~~~v~~~~~~~~~~P~LIlLaGp~GSGKSTlAr~La~~l~--~--------------~~~~~~~vvI-daD~Ike~d~i 220 (477)
.+|+......+..++| |+|.|| ||+|+.+.|.+.++ + +..|.++.+| +.+.|
T Consensus 87 ~~YE~V~~~~~~~~Rp--vVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~f------ 155 (292)
T 3tvt_A 87 LSYEAVQRLSINYTRP--VIILGP---LKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQM------ 155 (292)
T ss_dssp CCEEEEEEEECSSCCC--EEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHH------
T ss_pred cchheEEeccCCCCCe--EEEeCC---CHHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccCCHHHH------
Confidence 3476555543333444 555676 59999999998753 1 1123344555 22333
Q ss_pred HHHHhcCCCCCchhhHHHHHhHhHHHHHHHHHHHHHhCCCcEEEeCC
Q 011773 221 YRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGT 267 (477)
Q Consensus 221 rk~Ls~~g~p~d~~~~ae~v~~~a~~la~~li~~aL~~G~sVIiDgT 267 (477)
..+...+ .+.++++. +...+....+.+...+++|+++|+|-.
T Consensus 156 -e~~i~~~---~flE~a~~-~gn~YGT~~~~V~~~~~~gk~viLdid 197 (292)
T 3tvt_A 156 -ERDIQNH---LFIEAGQY-NDNLYGTSVASVREVAEKGKHCILDVS 197 (292)
T ss_dssp -HHHHHTT---CEEEEEEE-TTEEEEEEHHHHHHHHHHTCEEEECCC
T ss_pred -HHHHhcC---ceEEEEEE-ccceeEEehHHHHHHHHcCCcEEEecc
Confidence 1121111 12222111 222222223467788999999999965
No 370
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=93.41 E-value=0.019 Score=58.04 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+++|.|+|||||||+.+.|.--+
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 99999999999999999985443
No 371
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.40 E-value=0.049 Score=48.12 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=22.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
..+.-|++.|++||||||+...+....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678899999999999999998753
No 372
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.40 E-value=0.071 Score=55.18 Aligned_cols=42 Identities=10% Similarity=0.102 Sum_probs=31.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 213 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~ 213 (477)
....+++|+|+||+||||++..++...-. ..+..+.+++...
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~-~~g~~vl~~slE~ 239 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAAL-KEGVGVGIYSLEM 239 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEECCC
Confidence 34679999999999999999998876421 1234578888764
No 373
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.40 E-value=0.043 Score=46.76 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
.=|++.|++||||||+...+....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999988653
No 374
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.38 E-value=0.058 Score=54.86 Aligned_cols=39 Identities=13% Similarity=0.127 Sum_probs=28.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 213 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~ 213 (477)
++.|.|+|||||||++-+++....-.+++..+.+||+..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 789999999999999988766531001234688998875
No 375
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.36 E-value=0.05 Score=48.01 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
+.-|+|.|.+|+||||+...|...
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 466889999999999999999864
No 376
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.36 E-value=0.03 Score=60.02 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=23.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+...++.|.|+|||||||+.+.|..-.
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 346789999999999999999997643
No 377
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.35 E-value=0.056 Score=49.70 Aligned_cols=37 Identities=27% Similarity=0.351 Sum_probs=30.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 176 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 176 IlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
|.++|-.|+||||++..|+..+ +..+..+.+||.|.-
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~l--a~~g~~VlliD~D~~ 39 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIM--ASDYDKIYAVDGDPD 39 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHH--TTTCSCEEEEEECTT
T ss_pred EEEecCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCCC
Confidence 3448999999999999998876 355667899999973
No 378
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.35 E-value=0.081 Score=51.07 Aligned_cols=40 Identities=10% Similarity=0.245 Sum_probs=30.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
..-|+++|++|+||||++-.++..+- ..|....+++.|.-
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~--~~G~~V~v~d~D~q 45 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQL--RQGVRVMAGVVETH 45 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCCT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH--HCCCCEEEEEeCCC
Confidence 35699999999999999888876642 33456778898863
No 379
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=93.33 E-value=0.04 Score=61.95 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=21.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHH
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMK 195 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~ 195 (477)
....+++|.|||||||||+.+.++-
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHH
Confidence 3457999999999999999999764
No 380
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=93.32 E-value=0.04 Score=56.60 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=22.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
.|.+.+|.|||||||||+...+.--+
T Consensus 25 ~~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 36799999999999999999987654
No 381
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.32 E-value=0.065 Score=56.16 Aligned_cols=42 Identities=14% Similarity=0.106 Sum_probs=33.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCC-CCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA-ATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~-~~~~vvIdaD~I 214 (477)
....+++|+|+||+||||++..++...- .. +..+.+++.+.=
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a--~~~g~~vl~~s~E~s 282 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWG--TAMGKKVGLAMLEES 282 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHT--TTSCCCEEEEESSSC
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHH--HhcCCcEEEEeccCC
Confidence 4567999999999999999999988752 22 456888988764
No 382
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.29 E-value=0.04 Score=58.60 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
.++.|.|||||||||+.+.|..-.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 799999999999999999987654
No 383
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=93.28 E-value=0.046 Score=55.21 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=22.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHH
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMK 195 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~ 195 (477)
-.|-+.+|+|+|||||||+..+|.-
T Consensus 23 f~~gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 23 FEKGIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999864
No 384
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.28 E-value=0.06 Score=46.54 Aligned_cols=26 Identities=15% Similarity=0.256 Sum_probs=21.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
..+.-|+|.|.+|+||||+...+...
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhC
Confidence 34567899999999999999998754
No 385
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.28 E-value=0.035 Score=60.40 Aligned_cols=27 Identities=22% Similarity=0.339 Sum_probs=23.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
....++.|.|+|||||||+.+.|+..+
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 456799999999999999999997654
No 386
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.26 E-value=0.042 Score=56.25 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
..++.+.|+|||||||+.+.|....
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCEEEEECCCCccHHHHHHHHhccc
Confidence 4689999999999999999998643
No 387
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.26 E-value=0.048 Score=56.62 Aligned_cols=43 Identities=12% Similarity=0.176 Sum_probs=31.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....+++|+|+||+||||++..++...-. ..+..+.+++.+.=
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~-~~g~~Vl~~s~E~s 243 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVAT-KTNENVAIFSLEMS 243 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHH-HSSCCEEEEESSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHH-hCCCcEEEEECCCC
Confidence 34679999999999999999998876421 11235778876653
No 388
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.25 E-value=0.046 Score=46.67 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=21.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+.=|++.|++|+||||+...+....
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4568899999999999999998753
No 389
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=93.24 E-value=0.062 Score=57.45 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=34.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 213 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~ 213 (477)
..+++++++|..|+||||++..++..+ +..+....+||+|.
T Consensus 6 ~~~~i~~~sgkGGvGKTT~a~~lA~~l--A~~G~rVLlvd~D~ 46 (589)
T 1ihu_A 6 NIPPYLFFTGKGGVGKTSISCATAIRL--AEQGKRVLLVSTDP 46 (589)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEECCT
T ss_pred CCCEEEEEeCCCcCHHHHHHHHHHHHH--HHCCCcEEEEECCC
Confidence 456789999999999999999988765 34456789999994
No 390
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.24 E-value=0.082 Score=53.59 Aligned_cols=41 Identities=20% Similarity=0.346 Sum_probs=33.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhcccc--CCCCCeEEEeCcc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS--GAATNAVVVEADA 213 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~--~~~~~~vvIdaD~ 213 (477)
..+++++++|-.|+||||++..++..+ + ..+....+||+|-
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~l--a~~~~g~~vllid~D~ 58 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQL--ALAQPNEQFLLISTDP 58 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHH--HHHCTTSCEEEEECCS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHH--HHhcCCCeEEEEECCC
Confidence 445899999999999999999998764 3 4566789999993
No 391
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.23 E-value=0.052 Score=47.85 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=22.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
..+.=|+|.|.+|+||||+...|....
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCC
Confidence 334568999999999999999998753
No 392
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=93.23 E-value=0.7 Score=46.12 Aligned_cols=129 Identities=14% Similarity=0.025 Sum_probs=78.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccccchHHHHHHhcCCCCCchhhHHHHHhHhHHHHHHH
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 250 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike~d~irk~Ls~~g~p~d~~~~ae~v~~~a~~la~~ 250 (477)
..|++|++-|--||||++..+.|.+.+. ..++.++.... |.+. +..|. -++.
T Consensus 73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ld----PRg~~V~a~~~----------------Pt~e----E~~~~----ylwR 124 (289)
T 3rhf_A 73 PKRLLLILQAMDTAGKGGIVSHVVGAMD----PQGVQLTAFKA----------------PTDE----EKSHD----FLWR 124 (289)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHHSC----GGGEEEEECCS----------------CCHH----HHTSC----TTHH
T ss_pred CCcEEEEEECCCCCChHHHHHHHHHhcC----cCceEEEECCC----------------CChh----hhcCC----HHHH
Confidence 4699999999999999999999999874 23444542211 1110 11011 0112
Q ss_pred HHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHhccccccccccccceecCCCceehhhHHh-hhccchhhHhhhhhhhccC
Q 011773 251 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQ-VKEGEEDYQQKENRQVFSR 329 (477)
Q Consensus 251 li~~aL~~G~sVIiDgT~s~~~~re~lialar~~h~~~y~~~pGY~v~~dg~i~E~yw~~-v~~~~~~~~~~~~~~~~~~ 329 (477)
.....=..|.-+|||.+.-....++.+. |...+.-|.. +.+. ..+++....
T Consensus 125 ~~~~lP~~G~I~IFdRSwY~~vlverV~----------------------g~~~~~~~~~~~~~I------~~FE~~L~~ 176 (289)
T 3rhf_A 125 IEKQVPAAGMVGVFDRSQYEDVLIHRVH----------------------GWADAAELERRYAAI------NDFESRLTE 176 (289)
T ss_dssp HHTTCCCTTCEEEEESCGGGGGTHHHHT----------------------TSSCHHHHHHHHHHH------HHHHHHHHH
T ss_pred HHHhCCCCCeEEEEeCchhhhHhHHHHh----------------------cCCCHHHHHHHHHHH------HHHHHHHHh
Confidence 3333446799999998766554333221 1122333322 1111 112223467
Q ss_pred CCceEEEEEEecCHHHHHHHHHHhhh
Q 011773 330 KPYRIELVGVVCDAYLAVVRGIRRAI 355 (477)
Q Consensus 330 ~pY~I~lv~V~~d~elav~Rv~~R~~ 355 (477)
.|+.|.=++++.+.+.+..|...|-.
T Consensus 177 ~G~~ilKf~LhIskeEQ~kR~~~R~~ 202 (289)
T 3rhf_A 177 QGTTIVKVMLNISKDEQKKRLIARLD 202 (289)
T ss_dssp TTEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEECCHHHHHHHHHHHhc
Confidence 88888779999999999999999875
No 393
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.21 E-value=0.07 Score=46.59 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=23.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+.+.-|++.|.+|+||||+...|....
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCc
Confidence 345678999999999999999998763
No 394
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=93.19 E-value=0.33 Score=51.04 Aligned_cols=24 Identities=25% Similarity=0.464 Sum_probs=21.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMK 195 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~ 195 (477)
.+.+++|.|++|+||||+|..+..
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Confidence 467999999999999999999853
No 395
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.18 E-value=0.047 Score=46.59 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHh
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
.-|++.|.+|+||||+...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999999864
No 396
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.17 E-value=0.059 Score=56.27 Aligned_cols=42 Identities=10% Similarity=0.037 Sum_probs=32.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
....+++|+|+||+||||++..++...- ..+..+.+++...=
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a--~~g~~vl~fSlEms 236 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMS--DNDDVVNLHSLEMG 236 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHH--HTTCEEEEECSSSC
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHH--HcCCEEEEEECCCC
Confidence 3467999999999999999999987642 22446778887754
No 397
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=93.17 E-value=0.055 Score=54.99 Aligned_cols=34 Identities=9% Similarity=0.136 Sum_probs=26.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 211 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIda 211 (477)
+.+++|.|+||+||||++.+++...+ ..+.+++.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G-----~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALG-----GKDKYATV 156 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHH-----TTSCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCC-----CCEEEEEe
Confidence 46789999999999999999987532 34567776
No 398
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.17 E-value=0.054 Score=53.75 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=25.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
.+.|..+++.||+|+||||+++.+++.+.
T Consensus 21 ~~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 21 GRGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp TCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 35577899999999999999999999875
No 399
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.17 E-value=0.043 Score=53.93 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
..++.+.|+|||||||+.+.|....
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccc
Confidence 4688999999999999999997543
No 400
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=93.16 E-value=0.087 Score=53.26 Aligned_cols=41 Identities=20% Similarity=0.331 Sum_probs=34.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhcccc--CCCCCeEEEeCcc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS--GAATNAVVVEADA 213 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~--~~~~~~vvIdaD~ 213 (477)
...++++++|-.|.||||++..|+..+ + ..+..+.+||+|.
T Consensus 16 ~~~~i~v~sgKGGvGKTTvaanLA~~l--A~~~~G~rVLLvD~D~ 58 (354)
T 2woj_A 16 TTHKWIFVGGKGGVGKTTSSCSIAIQM--ALSQPNKQFLLISTDP 58 (354)
T ss_dssp SSCCEEEEEESTTSSHHHHHHHHHHHH--HHHCTTSCEEEEECCS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHH--HHhcCCCeEEEEECCC
Confidence 346799999999999999999988765 4 4566789999997
No 401
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.16 E-value=0.05 Score=46.45 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=20.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
+.=|++.|++|+||||+...+...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 345789999999999999999864
No 402
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=93.16 E-value=0.066 Score=50.68 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=32.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+.+++.+.+|-.|+||||++..|+..+ + .+..+.+||+|.-
T Consensus 26 ~~~vI~v~s~kGGvGKTT~a~~LA~~l--a-~g~~VlliD~D~~ 66 (267)
T 3k9g_A 26 KPKIITIASIKGGVGKSTSAIILATLL--S-KNNKVLLIDMDTQ 66 (267)
T ss_dssp CCEEEEECCSSSSSCHHHHHHHHHHHH--T-TTSCEEEEEECTT
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHH--H-CCCCEEEEECCCC
Confidence 344555668889999999999998876 3 4567899999964
No 403
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.14 E-value=0.044 Score=48.65 Aligned_cols=21 Identities=43% Similarity=0.798 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 011773 175 LLLMGGGMGAGKSTVLKDIMK 195 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~ 195 (477)
-|+|.|++|+||||+...+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999875
No 404
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.14 E-value=0.059 Score=47.58 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=21.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
.+.-|++.|.+|+||||+...|...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4566888999999999999998754
No 405
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=93.14 E-value=0.072 Score=49.09 Aligned_cols=40 Identities=20% Similarity=0.361 Sum_probs=30.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.++.+.++..|+||||++..|+..+ +..+..+.+||.|.-
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~l--a~~g~~VlliD~D~~ 42 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVAL--GDRGRKVLAVDGDLT 42 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHH--HHTTCCEEEEECCTT
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHH--HhcCCeEEEEeCCCC
Confidence 3556667788999999999998775 234557889999974
No 406
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.14 E-value=0.082 Score=49.89 Aligned_cols=39 Identities=23% Similarity=0.266 Sum_probs=30.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
+|.+.|-.|+||||++..|+..+ +..+..+.+||.|.-.
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~l--a~~G~~VlliD~D~q~ 41 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGL--HAMGKTIMVVGCDPKA 41 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH--HTTTCCEEEEEECTTS
T ss_pred EEEEecCCCCcHHHHHHHHHHHH--HHCCCcEEEEcCCCCC
Confidence 44457999999999999998875 3445678999999653
No 407
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.13 E-value=0.049 Score=47.09 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
+.=|++.|++|+||||+...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999999865
No 408
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.12 E-value=0.076 Score=58.53 Aligned_cols=43 Identities=16% Similarity=0.496 Sum_probs=33.1
Q ss_pred CCCE-EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 171 RSPV-LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 171 ~~P~-LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
.+|. -+++.||+|+|||++|+.++..+. ..+..++.||...+.
T Consensus 518 ~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~--~~~~~~i~i~~s~~~ 561 (758)
T 3pxi_A 518 KRPIGSFIFLGPTGVGKTELARALAESIF--GDEESMIRIDMSEYM 561 (758)
T ss_dssp TSCSEEEEEESCTTSSHHHHHHHHHHHHH--SCTTCEEEEEGGGGC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhc--CCCcceEEEechhcc
Confidence 3454 689999999999999999999863 233457788877664
No 409
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.06 E-value=0.044 Score=59.70 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
.++.|.|+|||||||+.+.|..-.
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Confidence 579999999999999999998654
No 410
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.05 E-value=0.051 Score=46.53 Aligned_cols=24 Identities=13% Similarity=0.214 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
+.=|++.|.+|+||||+...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999999865
No 411
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.04 E-value=0.05 Score=54.04 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=22.6
Q ss_pred CCEEEEE--EcCCCCcHHHHHHHHHHhc
Q 011773 172 SPVLLLM--GGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 172 ~P~LIlL--aGp~GSGKSTlAr~La~~l 197 (477)
.|..++| .|++|+||||+++.+...+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 4667888 9999999999999998765
No 412
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.03 E-value=0.051 Score=47.90 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=21.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
.+.-|++.|.+|+||||+...|...
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcC
Confidence 4467889999999999999999865
No 413
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.99 E-value=0.056 Score=47.59 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=21.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
..++.-|++.|.+|+||||+...+...
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcC
Confidence 345677899999999999999999864
No 414
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=92.95 E-value=0.091 Score=49.91 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=32.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
..++.+.+|-.|+||||++..|+..+. ..+..+.+||+|.-.
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la--~~G~~VlliD~D~~~ 59 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYA--RQGKKVGILDADFLG 59 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHH--HTTCCEEEEECCSSC
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCC
Confidence 345666778889999999999887652 345578899999763
No 415
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=92.95 E-value=0.046 Score=61.13 Aligned_cols=23 Identities=39% Similarity=0.417 Sum_probs=20.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHH
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMK 195 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~ 195 (477)
..+++|.|||||||||+.+.++-
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iag 598 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTAL 598 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHh
Confidence 46899999999999999999864
No 416
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.92 E-value=0.071 Score=46.53 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=22.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
....-|+|.|.+|+||||+...+....
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC
Confidence 334568999999999999999998653
No 417
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=92.90 E-value=0.076 Score=49.52 Aligned_cols=40 Identities=20% Similarity=0.279 Sum_probs=31.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.++.+.++-.|+||||++..|+..+ +..+..+.+||.|.-
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~l--a~~g~~VlliD~D~~ 42 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGL--AQKGKKTVVIDFAIG 42 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHH--HHTTCCEEEEECCCS
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHH--HhCCCcEEEEECCCC
Confidence 3556667888999999999998775 344567899999973
No 418
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.88 E-value=0.067 Score=45.50 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=20.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
+.=|++.|.+|+||||+...+...
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 345889999999999999999865
No 419
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=92.84 E-value=0.087 Score=49.51 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=31.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.++.+.+|-.|+||||++..|+..+ +..+..+.+||.|.-
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~l--a~~g~~VlliD~D~~ 42 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVAL--AQLGHDVTIVDADIT 42 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHH--HHTTCCEEEEECCCS
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHH--HhCCCcEEEEECCCC
Confidence 3566678889999999999998775 234557899999974
No 420
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=92.83 E-value=0.062 Score=54.81 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHH
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMK 195 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~ 195 (477)
|-+.++.|+|||||||+.+.+.-
T Consensus 26 ~g~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 26 EGVTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCChhHHHHHHHH
Confidence 45999999999999999999864
No 421
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.79 E-value=0.054 Score=46.28 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 011773 175 LLLMGGGMGAGKSTVLKDIMK 195 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~ 195 (477)
=|++.|.+|+||||+...+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 378899999999999998853
No 422
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.77 E-value=0.063 Score=45.71 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
+.=|++.|.+|+||||+...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999999864
No 423
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=92.77 E-value=0.068 Score=50.38 Aligned_cols=27 Identities=30% Similarity=0.540 Sum_probs=22.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
...+.-|+|.|.+||||||+...|...
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCC
Confidence 445678899999999999999999864
No 424
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.76 E-value=0.07 Score=45.87 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=20.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
+.=|+|.|.+|+||||+...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456889999999999999998754
No 425
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.72 E-value=0.06 Score=46.15 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 011773 175 LLLMGGGMGAGKSTVLKDIMK 195 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~ 195 (477)
=|++.|.+|+||||+...+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999864
No 426
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.72 E-value=0.061 Score=46.31 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
..-|++.|.+|+||||+...+....
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4668899999999999999998653
No 427
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.71 E-value=0.063 Score=46.77 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
..+.=|+|.|.+|+||||+...+...
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999999864
No 428
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.69 E-value=0.061 Score=46.87 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+.=|++.|.+|+||||+...|....
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCC
Confidence 4568999999999999999998653
No 429
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.63 E-value=0.067 Score=60.23 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=24.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
..|.=+++.||||+|||.+|++++.+++
T Consensus 509 ~~~~gvLl~GPPGtGKT~lAkaiA~e~~ 536 (806)
T 3cf2_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CCCSCCEEESSTTSSHHHHHHHHHHTTT
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHhC
Confidence 3466789999999999999999999974
No 430
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.61 E-value=0.058 Score=57.04 Aligned_cols=41 Identities=15% Similarity=0.351 Sum_probs=29.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 213 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~ 213 (477)
....+++|.|+|||||||+++.++.... ..+..+.++..++
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~--~~G~~vi~~~~ee 319 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENAC--ANKERAILFAYEE 319 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHH--TTTCCEEEEESSS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH--hCCCCEEEEEEeC
Confidence 3467999999999999999999986542 1223355665544
No 431
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.59 E-value=0.06 Score=46.46 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=20.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
.+.=|+|.|.+|+||||+...|...
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999998643
No 432
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.55 E-value=0.065 Score=46.16 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=20.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
+.-|++.|++|+||||+...+...
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356788899999999999999864
No 433
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.55 E-value=0.059 Score=46.95 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=21.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHH
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMK 195 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~ 195 (477)
+.+.-|++.|++||||||+...+..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4567889999999999999988753
No 434
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.53 E-value=0.066 Score=54.20 Aligned_cols=27 Identities=30% Similarity=0.254 Sum_probs=23.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
.+...+.|.|+|||||||+.+.|+...
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 346789999999999999999998875
No 435
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.52 E-value=0.083 Score=49.85 Aligned_cols=41 Identities=22% Similarity=0.164 Sum_probs=26.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 212 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD 212 (477)
..+..|.++.|++||||||-.-....++. ..+..+.++.+.
T Consensus 17 ~~~g~l~fiyG~MgsGKTt~Ll~~i~n~~--~~~~kvl~~kp~ 57 (195)
T 1w4r_A 17 KTRGQIQVILGPMFSGKSTELMRRVRRFQ--IAQYKCLVIKYA 57 (195)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHHHHH--HTTCCEEEEEET
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEEccc
Confidence 56689999999999999965554444432 223456666533
No 436
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.52 E-value=0.075 Score=47.08 Aligned_cols=26 Identities=38% Similarity=0.479 Sum_probs=22.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
..+.-|++.|++|+||||+...+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 45677899999999999999998654
No 437
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=92.49 E-value=0.059 Score=61.55 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=20.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHH
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDI 193 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~L 193 (477)
...+++|.|||||||||+.+.+
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3579999999999999999988
No 438
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=92.47 E-value=0.05 Score=62.08 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHH
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIM 194 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La 194 (477)
...+++|.|||||||||+.+.+.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHH
Confidence 45799999999999999999875
No 439
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.44 E-value=0.069 Score=46.65 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=21.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
.+.=|++.|.+|+||||+...+....
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 34668899999999999999998653
No 440
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.43 E-value=0.076 Score=45.26 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 011773 176 LLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 176 IlLaGp~GSGKSTlAr~La~~l 197 (477)
|++.|.+|+||||+...+....
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 6889999999999999997653
No 441
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=92.43 E-value=0.055 Score=53.31 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=19.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMK 195 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~ 195 (477)
.=|+|.|+|||||||+.+.|..
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4458999999999999999764
No 442
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.40 E-value=0.078 Score=47.25 Aligned_cols=27 Identities=15% Similarity=0.444 Sum_probs=22.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
..+.-|+|.|.+|+||||+...|....
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCC
Confidence 445678999999999999999998653
No 443
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.38 E-value=0.073 Score=49.60 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=22.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
...+.-|+|.|.+|+||||+...|....
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCC
Confidence 3456778999999999999999998653
No 444
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.37 E-value=0.068 Score=46.75 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHh
Q 011773 176 LLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 176 IlLaGp~GSGKSTlAr~La~~ 196 (477)
|++.|.+|+||||+...+...
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 678899999999999998765
No 445
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.36 E-value=0.089 Score=46.06 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHh
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
.-|++.|.+||||||+...+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35678899999999999998765
No 446
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=92.36 E-value=0.11 Score=56.91 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=30.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
--+++.||+|+|||++|+.++..++ ..++.+|..++.
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~~~ 525 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYM 525 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGCS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechhhc
Confidence 3689999999999999999999874 346677766663
No 447
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=92.35 E-value=0.052 Score=56.05 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=23.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
.++.+|.+-|+-||||||+++.|++.+.
T Consensus 47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 47 PTLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp CEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4568999999999999999999998763
No 448
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.33 E-value=0.083 Score=45.79 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=21.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
.+.=|++.|.+|+||||+...|...
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHhhC
Confidence 3466889999999999999999865
No 449
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=92.32 E-value=0.16 Score=49.85 Aligned_cols=41 Identities=20% Similarity=0.282 Sum_probs=32.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
.++.+.++-+|+||||++..|+..+ +..+..+.+||+|.-+
T Consensus 93 kvI~vts~kgG~GKTtva~nLA~~l--A~~G~rVLLID~D~~~ 133 (286)
T 3la6_A 93 NVLMMTGVSPSIGMTFVCANLAAVI--SQTNKRVLLIDCDMRK 133 (286)
T ss_dssp CEEEEEESSSSSSHHHHHHHHHHHH--HTTTCCEEEEECCTTT
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHH--HhCCCCEEEEeccCCC
Confidence 4555666678999999999998875 3456678999999864
No 450
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=92.31 E-value=0.045 Score=55.47 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=22.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
.+.+|.+-|+-||||||+++.|++.+
T Consensus 3 ~~~fI~~EG~dGsGKTT~~~~La~~L 28 (331)
T 1e2k_A 3 TLLRVYIDGPHGMGKTTTTQLLVALG 28 (331)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC--
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999999876
No 451
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.31 E-value=0.073 Score=46.15 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=21.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
.+.=|++.|.+|+||||+...+...
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456889999999999999998865
No 452
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=92.26 E-value=0.035 Score=55.52 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=21.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
...++.+.|+|||||||+.+.|...
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHhccc
Confidence 3569999999999999999998643
No 453
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.23 E-value=0.067 Score=63.06 Aligned_cols=42 Identities=14% Similarity=0.323 Sum_probs=32.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 216 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike 216 (477)
....+.+.|++||||||+++.|...+ .+..|.+.||.-++++
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~---~~~~G~I~idG~~i~~ 484 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYY---DVLKGKITIDGVDVRD 484 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSS---CCSEEEEEETTEETTT
T ss_pred CCcEEEEEecCCCcHHHHHHHhcccc---ccccCcccCCCccchh
Confidence 34689999999999999999998765 3455677887655543
No 454
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.22 E-value=0.11 Score=47.93 Aligned_cols=26 Identities=15% Similarity=0.349 Sum_probs=22.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
..+.-|+|.|.+|+||||+...|...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678899999999999999998764
No 455
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.20 E-value=0.095 Score=46.51 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=21.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
.+.=|+|.|.+||||||+...+....
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC
Confidence 34568899999999999999998653
No 456
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=92.19 E-value=0.1 Score=50.05 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=30.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
+|.+.|-.|+||||++..|+..+ +..+..+.+||+|.-.
T Consensus 4 vIavs~KGGvGKTT~a~nLA~~L--a~~G~rVlliD~D~q~ 42 (289)
T 2afh_E 4 QCAIYGKGGIGKSTTTQNLVAAL--AEMGKKVMIVGCDPKA 42 (289)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEEECSSS
T ss_pred EEEEeCCCcCcHHHHHHHHHHHH--HHCCCeEEEEecCCCC
Confidence 45558999999999999998775 2345578899999753
No 457
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.17 E-value=0.067 Score=57.62 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
..++|.||||+||||+++.++..+.
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 3678999999999999999998764
No 458
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=92.16 E-value=0.14 Score=47.35 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=31.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
++.+.++-.|+||||++..|+..+ +..+ ...+||.|.-
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~l--a~~g-~VlliD~D~q 39 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYL--ALQG-ETLLIDGDPN 39 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH--HTTS-CEEEEEECTT
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHH--HhcC-CEEEEECCCC
Confidence 456778899999999999998876 3456 7889999965
No 459
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.16 E-value=0.082 Score=47.30 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=20.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
.++.-|++.|++|+||||+...+...
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34557889999999999999999864
No 460
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.15 E-value=0.079 Score=45.87 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=22.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+.+.-|+|.|.+|+||||+...+....
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCC
Confidence 335678999999999999999997653
No 461
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=92.15 E-value=0.18 Score=50.46 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=22.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
..+..+++.|+||+||||+...|...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999998754
No 462
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.15 E-value=0.11 Score=45.74 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
..+.-|++.|.+|+||||+...|...
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcC
Confidence 34567889999999999999999864
No 463
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.12 E-value=0.07 Score=61.31 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHH
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMK 195 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~ 195 (477)
....++.|.|+|||||||+.+.|..
T Consensus 459 ~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 459 KRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4567899999999999999999984
No 464
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.08 E-value=0.081 Score=45.93 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=20.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
..=|++.|.+|+||||+...+...
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999998865
No 465
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.07 E-value=0.1 Score=46.48 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=21.9
Q ss_pred cccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 159 CTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 159 ~~~v~~~~~~~~~~P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
+...|..+. ...+.=|+|.|.+|+||||+...+...
T Consensus 16 ~~~~~~~~~--~~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 16 ENLYFQSMA--KSAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -------------CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cccchhccC--CCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 444555442 244567899999999999999999865
No 466
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=92.03 E-value=0.069 Score=61.57 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=19.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHH
Q 011773 173 PVLLLMGGGMGAGKSTVLKDI 193 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~L 193 (477)
..+++|+|||||||||+.+.+
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHH
Confidence 479999999999999999987
No 467
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.01 E-value=0.037 Score=61.98 Aligned_cols=38 Identities=24% Similarity=0.324 Sum_probs=29.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
.+..+++.||||+||||+++.++..++ .+.+.|+...+
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~-----~~~i~v~~~~l 547 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISIKGPEL 547 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHT-----CCCCCCCCSSS
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhC-----CCEEEEechHh
Confidence 456789999999999999999999874 34555665554
No 468
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=92.00 E-value=0.029 Score=53.71 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhcc
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKESF 198 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l~ 198 (477)
.++.|.|||||||||+.+.|.-.+.
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcccc
Confidence 3556789999999999999987653
No 469
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=91.98 E-value=0.091 Score=53.54 Aligned_cols=25 Identities=36% Similarity=0.384 Sum_probs=21.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHH
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMK 195 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~ 195 (477)
+++.=|+|-|.+||||||+++++.-
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~i 55 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMRI 55 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHHH
Confidence 4567788999999999999999853
No 470
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=91.97 E-value=0.087 Score=49.81 Aligned_cols=42 Identities=17% Similarity=0.205 Sum_probs=31.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
+++++.+.++-.|+||||++..|+..+ +..+..+.+||.|.-
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~l--a~~g~~VlliD~D~~ 46 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYL--ARLGKRVLLVDLDPQ 46 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHH--HHTTCCEEEEECCTT
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHH--HHCCCCEEEEECCCC
Confidence 334555666888999999999998775 234567899999974
No 471
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.93 E-value=0.1 Score=45.31 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=21.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
+.+.=|++.|.+|+||||+...+...
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 34566888999999999999998765
No 472
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.93 E-value=0.088 Score=46.57 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+.=|+|.|.+|+||||+...|....
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4568999999999999999998753
No 473
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=91.92 E-value=0.068 Score=62.84 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=32.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCcccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 215 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ik 215 (477)
....+.+.|+|||||||+.+.|...+ .|..|.+.+|.-+++
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll~g~~---~~~~G~i~i~g~~i~ 455 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLMQRLY---DPLDGMVSIDGQDIR 455 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHTTTSS---CCSEEEEEETTEEGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEHH
Confidence 44689999999999999999997654 344567788776654
No 474
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.91 E-value=0.077 Score=46.22 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=21.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
++.-|++.|.+|+||||+...+...
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3567889999999999999999854
No 475
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.80 E-value=0.086 Score=55.07 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=23.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
.+...+.|.|||||||||+.+.|+...
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 456789999999999999999998765
No 476
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=91.80 E-value=0.054 Score=55.15 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=24.7
Q ss_pred CCCEEEEEEcCCCCcHHHHH-HHHHHhcc
Q 011773 171 RSPVLLLMGGGMGAGKSTVL-KDIMKESF 198 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlA-r~La~~l~ 198 (477)
.++.+|.+-|+-||||||++ +.|.+.+.
T Consensus 10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~l~ 38 (341)
T 1osn_A 10 MGVLRIYLDGAYGIGKTTAAEEFLHHFAI 38 (341)
T ss_dssp EEEEEEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 45689999999999999999 99988763
No 477
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.79 E-value=0.096 Score=45.83 Aligned_cols=25 Identities=28% Similarity=0.181 Sum_probs=20.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
..=|+|.|.+|+||||+.+.+...+
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 4568999999999999998776553
No 478
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.74 E-value=0.11 Score=45.53 Aligned_cols=26 Identities=42% Similarity=0.451 Sum_probs=21.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
+.+.-|++.|.+|+||||+...+...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 45678899999999999999998643
No 479
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.74 E-value=0.13 Score=57.59 Aligned_cols=41 Identities=20% Similarity=0.355 Sum_probs=32.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccccc
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 216 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~Ike 216 (477)
.-+++.||+|+|||++|+.|+..+. ..+..++.||...+.+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~--~~~~~~i~i~~~~~~~ 629 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF--DTEEAMIRIDMTEYME 629 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH--SSGGGEEEECTTTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc--CCCCcEEEEechhccc
Confidence 4789999999999999999998863 1223577888877744
No 480
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.73 E-value=0.1 Score=51.42 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=22.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
...+++.||||+|||+++..|+..+
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3579999999999999999999864
No 481
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=91.73 E-value=0.26 Score=47.04 Aligned_cols=25 Identities=32% Similarity=0.547 Sum_probs=21.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
.+.-|++.|.+|+||||+...|...
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3567889999999999999998864
No 482
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.65 E-value=0.11 Score=45.84 Aligned_cols=26 Identities=12% Similarity=0.147 Sum_probs=21.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
..+.=|+|.|.+|+||||+...+...
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcC
Confidence 34567899999999999999998765
No 483
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.63 E-value=0.11 Score=45.82 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=21.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
.+.=|++.|.+|+||||+...+....
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCC
Confidence 35668899999999999999998753
No 484
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=91.60 E-value=0.095 Score=54.72 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l 197 (477)
-++|.|+||+||||+++.++..+
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999886
No 485
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=91.57 E-value=0.07 Score=56.81 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l 197 (477)
=++|.||||+|||++|+.++..+
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGGGB
T ss_pred eeEeecCchHHHHHHHHHHHHHH
Confidence 46789999999999999999876
No 486
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=91.56 E-value=0.05 Score=59.30 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHH
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDI 193 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~L 193 (477)
...++.|.|||||||||+.+.+
T Consensus 347 ~Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 347 LGTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp TTSEEEEECSTTSSHHHHHTTT
T ss_pred CCCEEEEEeeCCCCHHHHHHHH
Confidence 4578999999999999999754
No 487
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.55 E-value=0.13 Score=45.24 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=22.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
+.+.-|++.|.+|+||||+...+...
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34677899999999999999999854
No 488
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=91.54 E-value=0.34 Score=48.84 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=30.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCccc
Q 011773 172 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 214 (477)
Q Consensus 172 ~P~LIlLaGp~GSGKSTlAr~La~~l~~~~~~~~~vvIdaD~I 214 (477)
..++.+.+|-.|+||||++..|+..+. ..+..+.+||+|..
T Consensus 143 ~kvIav~s~KGGvGKTT~a~nLA~~La--~~g~rVlliD~D~~ 183 (373)
T 3fkq_A 143 SSVVIFTSPCGGVGTSTVAAACAIAHA--NMGKKVFYLNIEQC 183 (373)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHH--HHTCCEEEEECCTT
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH--hCCCCEEEEECCCC
Confidence 344555567999999999998887652 23457899999943
No 489
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=91.52 E-value=0.21 Score=49.42 Aligned_cols=40 Identities=10% Similarity=0.140 Sum_probs=29.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhcc-ccCCCCCeEEEeCc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKESF-WSGAATNAVVVEAD 212 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l~-~~~~~~~~vvIdaD 212 (477)
+-.+++.||+|+||||+++.+++..+ +.+..+++..++++
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~ 58 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE 58 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC
Confidence 56889999999999999999987532 11123467778765
No 490
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=91.51 E-value=0.47 Score=52.36 Aligned_cols=94 Identities=9% Similarity=0.156 Sum_probs=56.1
Q ss_pred ccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc--c--------------cCCCCCeEEE-eCcccccchHH
Q 011773 158 HCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF--W--------------SGAATNAVVV-EADAFKETDVI 220 (477)
Q Consensus 158 ~~~~v~~~~~~~~~~P~LIlLaGp~GSGKSTlAr~La~~l~--~--------------~~~~~~~vvI-daD~Ike~d~i 220 (477)
..||...+.. ...+++|+|.|| ||+|+.+.|.+.+. + +..+.++.|| +.++|.+
T Consensus 518 ~~Ye~V~~~~--~~~~r~vvl~GP---~K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~---- 588 (721)
T 2xkx_A 518 LSYETVTQME--VHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEK---- 588 (721)
T ss_pred CCceeeeccc--CCCCCEEEEECC---CHHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHH----
Confidence 3477666542 245678889999 39999999988652 1 1123445566 5665521
Q ss_pred HHHHhcCCCCCchhhHHHHHhHhHHHHHHHHHHHHHhCCCcEEEeCC
Q 011773 221 YRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGT 267 (477)
Q Consensus 221 rk~Ls~~g~p~d~~~~ae~v~~~a~~la~~li~~aL~~G~sVIiDgT 267 (477)
.+.. + .+..+++. |...|..-...++..+++|+++|+|..
T Consensus 589 --~i~~-~---~flE~~~~-~g~~YGt~~~~v~~~~~~g~~~ildi~ 628 (721)
T 2xkx_A 589 --DIRA-H---KFIEAGQY-NSHLYGTSVQSVREVAEQGKHCILDVS 628 (721)
T ss_pred --HHhc-C---CceEEEEE-CCccceeeHHHHHHHHHCCCcEEEeCC
Confidence 1222 1 22222222 333444455578888999999999963
No 491
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.47 E-value=0.13 Score=45.77 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=22.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
.+..=|+|.|.+|+||||+...+....
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 445678999999999999999887653
No 492
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=91.45 E-value=0.065 Score=58.10 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 011773 176 LLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 176 IlLaGp~GSGKSTlAr~La~~l 197 (477)
+.|.|+|||||||+.+.|...+
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC
T ss_pred EEEECCCCChHHHHHHHHhCCC
Confidence 8899999999999999998643
No 493
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.44 E-value=0.1 Score=45.70 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
+.-|+|.|.+|+||||+...|....
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4678999999999999999998753
No 494
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.43 E-value=0.13 Score=49.28 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHh
Q 011773 174 VLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 174 ~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
.-|++.|++||||||+...|...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999999754
No 495
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.42 E-value=0.1 Score=46.03 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=21.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
..=|+|.|.+|+||||+...+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 467899999999999999999865
No 496
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.42 E-value=0.1 Score=54.11 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 011773 175 LLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 175 LIlLaGp~GSGKSTlAr~La~~l 197 (477)
.++|.|++||||||++..+...+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 88999999999999999988775
No 497
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.41 E-value=0.13 Score=46.12 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=21.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 170 ERSPVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 170 ~~~P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
.+.+.-|+|.|.+|+||||+...+...
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 345678899999999999999999865
No 498
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=91.39 E-value=0.12 Score=46.61 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=20.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHH
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMK 195 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~ 195 (477)
.++.-|++.|++|+||||+...+..
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3355688999999999999998854
No 499
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.38 E-value=0.12 Score=45.93 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=22.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q 011773 171 RSPVLLLMGGGMGAGKSTVLKDIMKE 196 (477)
Q Consensus 171 ~~P~LIlLaGp~GSGKSTlAr~La~~ 196 (477)
+.+.-|+|.|.+|+||||+...+...
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcC
Confidence 34567899999999999999999865
No 500
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.30 E-value=0.11 Score=46.42 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=21.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 011773 173 PVLLLMGGGMGAGKSTVLKDIMKES 197 (477)
Q Consensus 173 P~LIlLaGp~GSGKSTlAr~La~~l 197 (477)
..=|+|.|.+|+||||+...|....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3558999999999999999997653
Done!