Query 011774
Match_columns 477
No_of_seqs 46 out of 48
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 05:05:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011774.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011774hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12600 DUF3769: Protein of u 100.0 8.7E-76 1.9E-80 610.2 27.2 335 78-477 99-450 (451)
2 PF08055 Trp_leader1: Tryptoph 23.1 45 0.00099 21.1 0.9 12 92-103 4-15 (18)
3 COG1452 Imp Organic solvent to 10.3 1.8E+02 0.0039 34.2 2.3 41 62-111 224-264 (784)
4 PRK04423 organic solvent toler 10.1 1.1E+03 0.025 27.7 8.6 41 62-111 226-266 (798)
5 COG4747 ACT domain-containing 8.9 70 0.0015 29.9 -1.3 15 179-193 88-102 (142)
6 PF13917 zf-CCHC_3: Zinc knuck 7.9 1.6E+02 0.0035 22.4 0.5 11 42-52 29-39 (42)
7 KOG0271 Notchless-like WD40 re 7.5 2.6E+02 0.0057 30.8 2.0 90 181-275 291-400 (480)
8 KOG2852 Possible oxidoreductas 7.3 3E+02 0.0064 29.6 2.2 34 353-386 30-63 (380)
9 PF06727 DUF1207: Protein of u 7.2 2.6E+03 0.057 22.5 9.6 16 289-304 93-108 (338)
10 cd00059 FH Forkhead (FH), also 6.9 2.4E+02 0.0052 23.8 1.1 10 197-206 68-77 (78)
No 1
>PF12600 DUF3769: Protein of unknown function (DUF3769); InterPro: IPR022244 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 560 and 931 amino acids in length.
Probab=100.00 E-value=8.7e-76 Score=610.19 Aligned_cols=335 Identities=27% Similarity=0.370 Sum_probs=285.4
Q ss_pred ccccceEEeeeeccCC-CCceeEeeeeecchhhhhhhhhhhcccchhhhhhhhcccccccccccccccceeeeeecCCcc
Q 011774 78 LELGSFALESLLLRPS-TSNWWLGLVGQFRPKKLISDIKREFSAAEDLELSVFTSAAKHVLDKSLYSVGLCSQLSIGPST 156 (477)
Q Consensus 78 ~~~GG~~l~r~~~~~~-t~nw~~~lt~Qf~~QK~is~~k~~~~n~~~~~~s~~~~~~k~l~D~SlyalG~~s~l~l~p~t 156 (477)
.+||||||+|.|..+. ++|||++|||||++||||........++. .+....+ +++|+|..+.+..++|++
T Consensus 99 ~Dr~Glfi~R~~~~i~~~~~~~l~ltPQfliQRAi~g~t~s~~~~~-------~~~~~~l--~dlFGL~a~l~~~l~~~~ 169 (451)
T PF12600_consen 99 DDRDGLFIGRNFNPINLTPNWWLTLTPQFLIQRAINGETNSYVNPG-------VKQDNNL--PDLFGLKARLNGNLGPNT 169 (451)
T ss_pred CcCCeEEEeccccccccCCcEEEEEeehhheehhhccccccccCCC-------ccccCch--hhheeEEEEEecccCCce
Confidence 4699999999999998 99999999999999999944322221111 1112222 789666666667799999
Q ss_pred eEEE-----eeeecCCcccccceEEEEeecC-----CceeEEEeccccccccCCCCeeeecceeeEEEeecC----CCCC
Q 011774 157 SLLW-----STERHGHKKGKRSKFMLYHKLL-----SHDITLEAAWPQLFIDHKAQYWDVPESVSLNVASLA----SDSG 222 (477)
Q Consensus 157 tLl~-----Sle~~~~~~~~R~k~~l~hklp-----~H~LtlEas~rerf~d~~~gywdVp~S~s~~laS~~----~~sG 222 (477)
++.+ |++++++++..|.|++++|+++ +|++++||+||||++||++|||||++|+|+.|.|++ +++|
T Consensus 170 ~l~~~a~lsSfd~~~~~~~~R~~~~l~~~i~~~~~~~~~l~l~~~YR~R~~NGsLG~q~V~ss~G~~l~s~~~~~~~~~g 249 (451)
T PF12600_consen 170 SLEGSAELSSFDPDNFENGLRSSSRLRQKIGLPLNNPHDLNLEYAYRERLWNGSLGFQDVYSSYGGVLESPGIWPLGNGG 249 (451)
T ss_pred EEEeeeEecccCcchhhhhhccchhhhcccCCccCCCceEEEEEeeeeeeecCCcCcEEEehhcceEEeccceecccCCC
Confidence 9986 6778889999999999999998 899999999999999999999999999999999987 5677
Q ss_pred c--eeEeeEEecCCCCCccCCCCCCCCccCCCCceeeEeeeeeecceecccCCCccchhhcccCCCCCCCCccccccCce
Q 011774 223 L--RYRFGIQKNGGQPESANAIDGEPPAALMPGLCAKAAFSYEQRKDMWRNKETKEDLIIKTDKGSFWRPAYDVCLREPH 300 (477)
Q Consensus 223 l--sY~~g~~~~~g~p~~~n~~t~r~P~~LLPgl~~qaa~S~~k~~~LWrgk~~~~~~~~~~~~g~~~~~~Y~~~p~~P~ 300 (477)
+ +||+++|+++++.+.+ .. ..+++..|+|+++||++++.||+||++|++++++ ++|++.|++||
T Consensus 250 l~~~Y~~~~~~~n~~td~~-~~-----~~~~~l~R~q~~~Sl~~~~~LW~gk~lp~t~~~~--------lrYsp~PivP~ 315 (451)
T PF12600_consen 250 LNLSYQWSVQLGNAQTDRF-RS-----NNLVPLWRAQAAASLNKSFPLWRGKPLPPTPEEG--------LRYSPRPIVPG 315 (451)
T ss_pred eeEEEEEEeeeeccccccC-CC-----CCcCccceEEEEEEccccceeecCCCCCCCCCcC--------CCCCcccccCc
Confidence 6 9999999977765544 12 2455778999999999999999999999999844 89999999999
Q ss_pred eEEeeeecceEEEeecCCccCccccCcCccccccccCCCCCccceeEeEEEEEEecccccccccceeeeeeeecccccch
Q 011774 301 AAISTIIGGTCVAWFGGKESSMAGESQDGRIAVNTKKRSPLSADLFGSICCTVQHGKFRRIFADLTRVDARLDISSVSGL 380 (477)
Q Consensus 301 vaisGiiG~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~adlfgSv~~t~Q~G~FsR~flDyTrf~~rld~~sas~l 380 (477)
|++.+.+.++. +.|+|++. |.+|+||+|+++|+|||+|+|||||+|+++|+++
T Consensus 316 l~l~t~l~~~~-s~Y~nGd~---------------------Q~~l~~s~g~~~q~G~Fsr~~~DyT~~~~~~~~~----- 368 (451)
T PF12600_consen 316 LSLNTGLTGVY-SFYSNGDS---------------------QNSLFGSVGPTGQLGNFSRPFLDYTRFSIRYSQT----- 368 (451)
T ss_pred EEEEecccccc-ccccCCCc---------------------ceeeEEeeeeEEEEccccccccccceEeeeecce-----
Confidence 99977676665 55555543 5799999999999999999999999999999855
Q ss_pred hhhhhcccccCCCCccccccccceeeEEeeeeEeeceEEEEEeeeeeccCCCCCCCcccceEEEEEeeccccccceEEEE
Q 011774 381 AKSILNTFSRNSASSADNLVFSPRLNFILQQQVLGPIVFRVDSKYLLDAASGKDGSHMEDVIYSLSYSLRLLRSGKVVAW 460 (477)
Q Consensus 381 aq~l~~~~~~~sp~~~~~~~~~p~lsl~lqQQI~GP~rfrvqS~~sid~~~~~~~~~~~d~iy~leyslrtlgSakivaw 460 (477)
+.+.. |||+||+.++.++|+++|+|||||||+|+||++++||. .+.+ |+.|.|||+||+|+ +++|
T Consensus 369 ---~~~g~---Spf~fD~~~d~~~l~~~~~QQi~GP~~~~~~~~~nld~---g~~i---~t~~~L~~sRRsY~---i~~~ 433 (451)
T PF12600_consen 369 ---LKSGA---SPFLFDRIVDLPTLSLGLTQQIYGPLRFGVQSSINLDS---GEEI---NTDYSLEYSRRSYG---IGLR 433 (451)
T ss_pred ---eccCC---CccccccccccceEEEEEEEEeeCCEEEeeeeEEEcCC---CcEe---eeeEEEEEEeeecc---EEEE
Confidence 34443 89999999999999999999999999999999999999 4444 45599999999997 9999
Q ss_pred eccccccceEEEEeecC
Q 011774 461 YSPKRKEGMIELRLFEF 477 (477)
Q Consensus 461 YnP~rqegmveLRifdf 477 (477)
|||++|+|||+|||+||
T Consensus 434 YnP~~~~Ggi~fRl~dF 450 (451)
T PF12600_consen 434 YNPVRQIGGISFRLNDF 450 (451)
T ss_pred ECcccccccEEEEeccC
Confidence 99999999999999998
No 2
>PF08055 Trp_leader1: Tryptophan leader peptide; InterPro: IPR012638 This family consists of the tryptophan (trp) leader peptides. Tryptophan accumulation is the principal event resulting in down regulation of transcription of the structural genes of the trp operon. The leader peptide of the trp operon forms mutually exclusive secondary structures that would either result in the termination of transcription of the trp operon when tryptophan is in plentiful supply or vice versa [].
Probab=23.12 E-value=45 Score=21.12 Aligned_cols=12 Identities=25% Similarity=0.675 Sum_probs=9.4
Q ss_pred CCCCceeEeeee
Q 011774 92 PSTSNWWLGLVG 103 (477)
Q Consensus 92 ~~t~nw~~~lt~ 103 (477)
+.+.|||++.-|
T Consensus 4 ~~~~nwwwtahp 15 (18)
T PF08055_consen 4 HQIQNWWWTAHP 15 (18)
T ss_pred ccccceeeeccc
Confidence 467899999765
No 3
>COG1452 Imp Organic solvent tolerance protein OstA [Cell envelope biogenesis, outer membrane]
Probab=10.26 E-value=1.8e+02 Score=34.22 Aligned_cols=41 Identities=24% Similarity=0.334 Sum_probs=34.4
Q ss_pred CCccCCCCCCCCCcccccccceEEeeeeccCCCCceeEeeeeecchhhhh
Q 011774 62 IIPSYAPASPSPSQKELELGSFALESLLLRPSTSNWWLGLVGQFRPKKLI 111 (477)
Q Consensus 62 ~~PS~~~~~~~~~~~~~~~GG~~l~r~~~~~~t~nw~~~lt~Qf~~QK~i 111 (477)
++|+++-++. -||++.--+-..-.+||=+|||||++-+|.+
T Consensus 224 L~P~~~~ss~---------~Gf~~~~PyY~~laPn~DlTltp~y~skrG~ 264 (784)
T COG1452 224 LIPSFGYSSR---------NGFSYGQPYYWNLAPNYDLTLTPQYMSKRGF 264 (784)
T ss_pred ccccccccCC---------CCeEEecceEEeccCCCCcEEchHHHhhhCc
Confidence 6898876553 3999988888888999999999999999954
No 4
>PRK04423 organic solvent tolerance protein; Provisional
Probab=10.06 E-value=1.1e+03 Score=27.70 Aligned_cols=41 Identities=12% Similarity=0.228 Sum_probs=33.2
Q ss_pred CCccCCCCCCCCCcccccccceEEeeeeccCCCCceeEeeeeecchhhhh
Q 011774 62 IIPSYAPASPSPSQKELELGSFALESLLLRPSTSNWWLGLVGQFRPKKLI 111 (477)
Q Consensus 62 ~~PS~~~~~~~~~~~~~~~GG~~l~r~~~~~~t~nw~~~lt~Qf~~QK~i 111 (477)
++|++.-++ +.||.+.--+...-.+|+-+||||++.-+|.+
T Consensus 226 L~P~~g~s~---------~~G~~~~~Pyy~~ia~~~D~tl~p~~~skrG~ 266 (798)
T PRK04423 226 LFPQFGLSG---------RNGFDYLQPIYLNLAPNYDATLLPRYMSKRGF 266 (798)
T ss_pred ecccccccC---------CCCeEEEeeEEEecCCCCceEEeEEEEecCcc
Confidence 456665443 35998888888899999999999999988887
No 5
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=8.93 E-value=70 Score=29.87 Aligned_cols=15 Identities=27% Similarity=0.341 Sum_probs=12.6
Q ss_pred eecCCceeEEEeccc
Q 011774 179 HKLLSHDITLEAAWP 193 (477)
Q Consensus 179 hklp~H~LtlEas~r 193 (477)
.-|.+|++|+||.|-
T Consensus 88 ~vl~d~diNldYiYA 102 (142)
T COG4747 88 EVLGDADINLDYIYA 102 (142)
T ss_pred HHHhhcCcCceeeee
Confidence 337899999999994
No 6
>PF13917 zf-CCHC_3: Zinc knuckle
Probab=7.86 E-value=1.6e+02 Score=22.38 Aligned_cols=11 Identities=55% Similarity=0.585 Sum_probs=9.1
Q ss_pred cccchhhhhHH
Q 011774 42 ASRALRIQQLS 52 (477)
Q Consensus 42 ~srl~R~qQl~ 52 (477)
-+|.+|+|||.
T Consensus 29 ~~RpSrtq~l~ 39 (42)
T PF13917_consen 29 TSRPSRTQQLK 39 (42)
T ss_pred ccCCCHHHHhh
Confidence 38899999985
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=7.55 E-value=2.6e+02 Score=30.79 Aligned_cols=90 Identities=13% Similarity=0.137 Sum_probs=51.4
Q ss_pred cCCceeEEEeccccccccCCCCeeeecce----------------eeEEEeecCCCCCceeEeeEEecCCCCCccCCCCC
Q 011774 181 LLSHDITLEAAWPQLFIDHKAQYWDVPES----------------VSLNVASLASDSGLRYRFGIQKNGGQPESANAIDG 244 (477)
Q Consensus 181 lp~H~LtlEas~rerf~d~~~gywdVp~S----------------~s~~laS~~~~sGlsY~~g~~~~~g~p~~~n~~t~ 244 (477)
+.+-.|+-||+-|--=||+.+.|-. |.| -+--|.|- +| -|.+=+=....+.|+++.-++
T Consensus 291 vN~lalsTdy~LRtgaf~~t~~~~~-~~se~~~~Al~rY~~~~~~~~erlVSg-sD---d~tlflW~p~~~kkpi~rmtg 365 (480)
T KOG0271|consen 291 VNHLALSTDYVLRTGAFDHTGRKPK-SFSEEQKKALERYEAVLKDSGERLVSG-SD---DFTLFLWNPFKSKKPITRMTG 365 (480)
T ss_pred eeeeeccchhhhhccccccccccCC-ChHHHHHHHHHHHHHhhccCcceeEEe-cC---CceEEEecccccccchhhhhc
Confidence 5566788899999988999877732 110 00011110 11 122222222222455555222
Q ss_pred CC----CccCCCCceeeEeeeeeecceecccCCCc
Q 011774 245 EP----PAALMPGLCAKAAFSYEQRKDMWRNKETK 275 (477)
Q Consensus 245 r~----P~~LLPgl~~qaa~S~~k~~~LWrgk~~~ 275 (477)
-. .+..=|-.++-|++|+.|++-||.|+.-+
T Consensus 366 Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk 400 (480)
T KOG0271|consen 366 HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGK 400 (480)
T ss_pred hhhheeeEEECCCccEEEEeecccceeeeeCCCcc
Confidence 21 12344778999999999999999999655
No 8
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=7.26 E-value=3e+02 Score=29.62 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=28.4
Q ss_pred EEecccccccccceeeeeeeecccccchhhhhhc
Q 011774 353 VQHGKFRRIFADLTRVDARLDISSVSGLAKSILN 386 (477)
Q Consensus 353 ~Q~G~FsR~flDyTrf~~rld~~sas~laq~l~~ 386 (477)
+||+.|.|-=+|.|=|.-+==.|.||+-|-.++.
T Consensus 30 t~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa 63 (380)
T KOG2852|consen 30 TEHPSFKKGELDITIFESKEIAGGASGKASGFLA 63 (380)
T ss_pred hcCCccCCCceeEEEEeecccccccccccchhhH
Confidence 5899999999999999988888888887755554
No 9
>PF06727 DUF1207: Protein of unknown function (DUF1207); InterPro: IPR009599 This family consists of a number of hypothetical bacterial proteins of around 410 residues in length, which seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=7.16 E-value=2.6e+03 Score=22.51 Aligned_cols=16 Identities=25% Similarity=0.162 Sum_probs=12.4
Q ss_pred CCCccccccCceeEEe
Q 011774 289 RPAYDVCLREPHAAIS 304 (477)
Q Consensus 289 ~~~Y~~~p~~P~vais 304 (477)
..|+=+-|.+|+++++
T Consensus 93 F~PLLADPrepr~sv~ 108 (338)
T PF06727_consen 93 FKPLLADPREPRFSVS 108 (338)
T ss_pred ccccccCCccceEeee
Confidence 4778888888888773
No 10
>cd00059 FH Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as monomers, are also found in the Hepatocyte nuclear factor (HNF) proteins, which provide tissue-specific gene regulation. The structure contains 2 flexible loops or "wings" in the C-terminal region, hence the term winged helix.
Probab=6.89 E-value=2.4e+02 Score=23.75 Aligned_cols=10 Identities=30% Similarity=0.763 Sum_probs=8.1
Q ss_pred ccCCCCeeee
Q 011774 197 IDHKAQYWDV 206 (477)
Q Consensus 197 ~d~~~gywdV 206 (477)
-.++|.||+|
T Consensus 68 ~~gkg~~W~i 77 (78)
T cd00059 68 EPGKGSYWTL 77 (78)
T ss_pred CCCCCCeeee
Confidence 3489999987
Done!