Query 011774
Match_columns 477
No_of_seqs 46 out of 48
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 15:03:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011774.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011774hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x55_A Coagulase/fibrinolysin; 12.2 2.7E+02 0.0094 27.3 5.5 86 141-228 174-293 (293)
2 2rh2_A Dihydrofolate reductase 5.8 2.5E+02 0.0086 21.6 1.7 12 455-466 24-35 (62)
3 1i78_A Protease VII; integral 5.4 9.9E+02 0.034 23.3 6.2 53 141-194 178-255 (297)
4 1y0n_A Hypothetical UPF0270 pr 4.9 2.7E+02 0.0093 22.7 1.5 28 443-470 30-65 (78)
5 2jmm_A Outer membrane protein 3.7 9E+02 0.031 20.3 4.0 7 222-228 145-151 (156)
6 1k8k_E P21, ARP2/3 complex 21 3.4 3.4E+02 0.012 25.3 1.0 14 29-42 104-118 (178)
7 2cdp_A Beta-agarase 1; carbohy 3.3 9.4E+02 0.032 20.9 3.8 31 443-475 71-101 (160)
8 1uxz_A Cellulase B; carbohydra 3.2 8E+02 0.027 20.4 3.2 24 452-475 52-75 (131)
9 1qjp_A Outer membrane protein 3.2 9.3E+02 0.032 19.7 3.6 18 176-193 126-144 (171)
10 1w9s_A BH0236 protein, BHCBM6; 3.2 9.7E+02 0.033 20.1 3.7 30 445-474 49-80 (142)
No 1
>2x55_A Coagulase/fibrinolysin; transmembrane, aspartyl protease, cell outer membrane, OMPT protease, hydrolase; HET: C8E; 1.85A {Yersinia pestis} PDB: 2x56_A* 2x4m_A*
Probab=12.16 E-value=2.7e+02 Score=27.28 Aligned_cols=86 Identities=20% Similarity=0.271 Sum_probs=46.6
Q ss_pred ccccceeeeeecCCcceEEEeee------ecCCcc-cccceEEEEeec-----------------CCceeEEEeccccc-
Q 011774 141 LYSVGLCSQLSIGPSTSLLWSTE------RHGHKK-GKRSKFMLYHKL-----------------LSHDITLEAAWPQL- 195 (477)
Q Consensus 141 lyalG~~s~l~l~p~ttLl~Sle------~~~~~~-~~R~k~~l~hkl-----------------p~H~LtlEas~rer- 195 (477)
+..+||..+..+. +..|.+++. .++..+ -.|. +.|.++. |+=.|-+|+.|.-.
T Consensus 174 ~pyiGL~g~yr~~-~~~l~~~~~~s~~v~a~~~D~H~~R~-l~F~d~~~~~~~~~~~~~~~Y~ltp~~sl~~e~~y~~~~ 251 (293)
T 2x55_A 174 MPYIGLAGQYRIN-DFELNALFKFSDWVRAHDNDEHYMRD-LTFREKTSGSRYYGTVINAGYYVTPNAKVFAEFTYSKYD 251 (293)
T ss_dssp EEEEEEEEEEEET-TEEEEEEEEEEEEEEEEEEEEEGGGT-EEEEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred eeeeeEEEEEEec-cEEEEEEEecceeEEEecccHHhccC-CccccccCCCceEEEEEEEEEecCCCEEEEEEEEEEeee
Confidence 4557888777775 666655443 223223 3465 7777663 56677788888632
Q ss_pred -------cccCCCCeee--ecceeeEEEeecCCCCCceeEee
Q 011774 196 -------FIDHKAQYWD--VPESVSLNVASLASDSGLRYRFG 228 (477)
Q Consensus 196 -------f~d~~~gywd--Vp~S~s~~laS~~~~sGlsY~~g 228 (477)
.+|..-|-+. .+.++++...+.+-.-||.|+||
T Consensus 252 ~~kG~t~~~~~~~g~~~~~~~n~aG~~~~~~~v~~gl~Y~F~ 293 (293)
T 2x55_A 252 EGKGGTQTIDKNSGDSVSIGGDAAGISNKNYTVTAGLQYRFG 293 (293)
T ss_dssp C----------------CBCGGGEEEEEEEEEEEEEEEEEEC
T ss_pred cccCceEEecCCCCceeeccCCccceeeeeEEEEEEEEEEcC
Confidence 2333323332 36666666666554456777765
No 2
>2rh2_A Dihydrofolate reductase type 2; folate metabolism, plasmid-encoded R67 DHFR, TMP-resistant DHFR, antibiotic resistance, methotrexate resistance; 0.96A {Escherichia coli} SCOP: b.34.4.1 PDB: 1vif_A* 1vie_A 2gqv_A 2rk1_A* 2rk2_A* 3sfm_A 2p4t_A*
Probab=5.79 E-value=2.5e+02 Score=21.56 Aligned_cols=12 Identities=33% Similarity=0.999 Sum_probs=9.7
Q ss_pred ceEEEEeccccc
Q 011774 455 GKVVAWYSPKRK 466 (477)
Q Consensus 455 akivawYnP~rq 466 (477)
+.||-|||.++-
T Consensus 24 g~ivgwyct~lt 35 (62)
T 2rh2_A 24 GQIVGWYCTNLT 35 (62)
T ss_dssp EEEEEEECCSSC
T ss_pred ceEeEEEEcccc
Confidence 479999998864
No 3
>1i78_A Protease VII; integral outer membrane protein, beta barrel, HYDR; HET: BOG; 2.60A {Escherichia coli} SCOP: f.4.4.1
Probab=5.39 E-value=9.9e+02 Score=23.32 Aligned_cols=53 Identities=13% Similarity=0.225 Sum_probs=32.1
Q ss_pred ccccceeeeeecCCcceEEEeee------ecCC-cccc-cceEEEEeec-----------------CCceeEEEecccc
Q 011774 141 LYSVGLCSQLSIGPSTSLLWSTE------RHGH-KKGK-RSKFMLYHKL-----------------LSHDITLEAAWPQ 194 (477)
Q Consensus 141 lyalG~~s~l~l~p~ttLl~Sle------~~~~-~~~~-R~k~~l~hkl-----------------p~H~LtlEas~re 194 (477)
+..+||..+..+. +..|.+++. .++. +.-. |.++.|.++. |+-.|-+|+.|.-
T Consensus 178 ~pyiGL~g~y~~~-~~~l~~~~~~s~~v~a~~~D~H~~~rr~l~F~d~~~~~~~~~~~~~~~Y~ltp~~sl~~e~~y~~ 255 (297)
T 1i78_A 178 MPYIGLTGSYRYE-DFELGGTFKYSGWVESSDNDEHYDPKGRITYRSKVKDQNYYSVAVNAGYYVTPNAKVYVEGAWNR 255 (297)
T ss_dssp EEEEEEEEEEEET-TEEEEEEEEEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred eeeeeEEEEEeeC-cEEEEEEEecceeEEEeecchhhcccCCCcceeccCCCceEEEEEEEEEecCCCEEEEEEEEEEe
Confidence 5557888887776 566655443 2232 2333 6788887774 4556666777753
No 4
>1y0n_A Hypothetical UPF0270 protein PA3463; MCSG, midwest center for structural genomics, protein struct initiative, PSI, structural genomics; 2.00A {Pseudomonas aeruginosa} SCOP: d.291.1.1
Probab=4.91 E-value=2.7e+02 Score=22.71 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=18.4
Q ss_pred EEEEeec--------cccccceEEEEeccccccceE
Q 011774 443 YSLSYSL--------RLLRSGKVVAWYSPKRKEGMI 470 (477)
Q Consensus 443 y~leysl--------rtlgSakivawYnP~rqegmv 470 (477)
|+-|+++ +-|.++++|++|++..+--.|
T Consensus 30 yg~E~sL~~kv~qv~~qL~~GeavIvfse~~Esv~I 65 (78)
T 1y0n_A 30 NGDETPLDVRVERARHALRRGEAVILFDPESQQCQL 65 (78)
T ss_dssp ----CCHHHHHHHHHHHHHTTSEEEEECTTTCCEEE
T ss_pred ccccccHHHHHHHHHHHHHcCCEEEEECCCCCeEee
Confidence 5555554 368899999999998875433
No 5
>2jmm_A Outer membrane protein A; NMR {Escherichia coli}
Probab=3.74 E-value=9e+02 Score=20.26 Aligned_cols=7 Identities=71% Similarity=1.630 Sum_probs=4.4
Q ss_pred CceeEee
Q 011774 222 GLRYRFG 228 (477)
Q Consensus 222 GlsY~~g 228 (477)
|++||||
T Consensus 145 Gl~Y~Fg 151 (156)
T 2jmm_A 145 GVSYRFG 151 (156)
T ss_dssp EEEEESC
T ss_pred EEEEECC
Confidence 5667765
No 6
>1k8k_E P21, ARP2/3 complex 21 kDa subunit, P21-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.148.1.1 PDB: 1tyq_E* 1u2v_E* 2p9i_E* 2p9k_E* 2p9l_E 2p9n_E* 2p9p_E* 2p9s_E* 2p9u_E* 3dxk_E* 3dxm_E* 3rse_E
Probab=3.39 E-value=3.4e+02 Score=25.31 Aligned_cols=14 Identities=71% Similarity=1.255 Sum_probs=11.0
Q ss_pred ccCCCC-Cccccccc
Q 011774 29 SIPGEP-FPLDAARA 42 (477)
Q Consensus 29 ~vpgdp-~pl~~~r~ 42 (477)
++|||| |||+.--.
T Consensus 104 ~iPGd~gFpLn~~y~ 118 (178)
T 1k8k_E 104 PIPGEPGFPLNAIYA 118 (178)
T ss_dssp CCTTSTTCTTTTTSC
T ss_pred CCCCCCCCCcccccc
Confidence 589999 89886544
No 7
>2cdp_A Beta-agarase 1; carbohydrate-binding module, hydrolase; HET: GAL AAL; 1.59A {Saccharophagus degradans} PDB: 2cdo_A*
Probab=3.32 E-value=9.4e+02 Score=20.85 Aligned_cols=31 Identities=13% Similarity=0.107 Sum_probs=23.1
Q ss_pred EEEEeeccccccceEEEEeccccccceEEEEee
Q 011774 443 YSLSYSLRLLRSGKVVAWYSPKRKEGMIELRLF 475 (477)
Q Consensus 443 y~leyslrtlgSakivawYnP~rqegmveLRif 475 (477)
|.++-+ .=|.+++.+||...-..+.++|||-
T Consensus 71 y~V~v~--~aG~Y~i~~rvas~~~g~~i~l~vd 101 (160)
T 2cdp_A 71 YTIAVA--QAGNYTISYQAGSGVTGGSIEFLVN 101 (160)
T ss_dssp EEEEES--SCEEEEEEEEEEBSSSSCEEEEEEE
T ss_pred EEEEcC--CCcEEEEEEEEEcCCCCceEEEEEC
Confidence 555533 3466689999988877788999985
No 8
>1uxz_A Cellulase B; carbohydrate binding module, CBM6, mixted BETA1, 3-1, 4 linked glucan; 1.4A {Cellvibrio mixtus} SCOP: b.18.1.10 PDB: 1uy0_A* 1uyx_A* 1uyy_A* 1uyz_A* 1uz0_A*
Probab=3.24 E-value=8e+02 Score=20.38 Aligned_cols=24 Identities=8% Similarity=-0.054 Sum_probs=18.4
Q ss_pred cccceEEEEeccccccceEEEEee
Q 011774 452 LRSGKVVAWYSPKRKEGMIELRLF 475 (477)
Q Consensus 452 lgSakivawYnP~rqegmveLRif 475 (477)
=|..++.+||.-....|.+|||+-
T Consensus 52 ~G~y~~~~rvas~~~gg~i~v~~~ 75 (131)
T 1uxz_A 52 SGSYLIEYRVASQNGGGSLTFEEA 75 (131)
T ss_dssp SEEEEEEEEEEESSCCEEEEEEET
T ss_pred CCceEEEEEEECCCCCcEEEEEEC
Confidence 456679999977666788999973
No 9
>1qjp_A Outer membrane protein A; HET: C8E; 1.65A {Escherichia coli} SCOP: f.4.1.1 PDB: 1bxw_A* 1g90_A 2ge4_A
Probab=3.20 E-value=9.3e+02 Score=19.75 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=8.8
Q ss_pred EEEeec-CCceeEEEeccc
Q 011774 176 MLYHKL-LSHDITLEAAWP 193 (477)
Q Consensus 176 ~l~hkl-p~H~LtlEas~r 193 (477)
=+..+| ++-.|.+||.|-
T Consensus 126 G~~y~~~~~~~~~~ey~~~ 144 (171)
T 1qjp_A 126 GVEYAITPEIATRLEYQWT 144 (171)
T ss_dssp EEEEEEETTEEEEEEEEEE
T ss_pred eEEEEECcceEEEEEEEEE
Confidence 333343 445556666553
No 10
>1w9s_A BH0236 protein, BHCBM6; carbohydrate-binding module, lectin, beta-glucan, carbohydrate binding, glycoside hydrolase; 1.59A {Bacillus halodurans} SCOP: b.18.1.10 PDB: 1w9t_A* 1w9w_A*
Probab=3.20 E-value=9.7e+02 Score=20.06 Aligned_cols=30 Identities=17% Similarity=0.347 Sum_probs=0.0
Q ss_pred EEee-ccc-cccceEEEEeccccccceEEEEe
Q 011774 445 LSYS-LRL-LRSGKVVAWYSPKRKEGMIELRL 474 (477)
Q Consensus 445 leys-lrt-lgSakivawYnP~rqegmveLRi 474 (477)
|+|. ... -|..++.+++.-....|.||||+
T Consensus 49 l~y~~vd~~~G~~~~~~rvas~~~gg~iev~~ 80 (142)
T 1w9s_A 49 VKYERVHFERDASSIEVRVASDTPGGRIEIRT 80 (142)
T ss_dssp EEEEEEEESSCEEEEEEEEEESSSCEEEEEEE
T ss_pred EEEEeEecCCCcEEEEEEEEcCCCCeEEEEEE
Done!