Query 011774
Match_columns 477
No_of_seqs 46 out of 48
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 15:03:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011774.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011774hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3bz7a1 b.34.3.1 (A:34-79) Myo 22.5 14 0.001 25.2 1.2 10 459-468 2-11 (46)
2 d2rh2a1 b.34.4.1 (A:21-78) R67 6.3 1.1E+02 0.0077 21.6 1.7 12 455-466 20-31 (58)
3 d1qfha2 b.1.18.10 (A:750-857) 6.2 2.2E+02 0.016 21.5 3.8 27 441-467 54-80 (108)
4 d1t16a_ f.4.3.4 (A:) Long-chai 6.0 4.1E+02 0.03 22.6 6.1 31 132-164 317-347 (427)
5 d1ukga_ b.29.1.1 (A:) Legume l 4.9 3.6E+02 0.026 22.4 4.9 63 208-275 2-65 (241)
6 d1w9sa_ b.18.1.10 (A:) Hypothe 4.2 2.5E+02 0.018 21.6 2.9 23 453-475 53-75 (134)
7 d1uxxx_ b.18.1.10 (X:) Carbohy 4.1 3.7E+02 0.027 20.1 3.9 23 453-475 46-69 (125)
8 d2veaa2 d.110.2.4 (A:327-514) 3.5 69 0.0051 27.3 -1.4 36 227-272 119-155 (188)
9 d1obfo2 d.81.1.1 (O:153-314) G 3.3 1.9E+02 0.013 24.1 1.3 6 456-461 157-162 (162)
10 d1igna2 a.4.1.6 (A:446-594) DN 3.1 66 0.0048 27.2 -1.8 14 181-197 88-101 (149)
No 1
>d3bz7a1 b.34.3.1 (A:34-79) Myosin S1 fragment, N-terminal domain {Dictyostelium discoideum [TaxId: 44689]}
Probab=22.53 E-value=14 Score=25.18 Aligned_cols=10 Identities=50% Similarity=1.169 Sum_probs=8.3
Q ss_pred EEeccccccc
Q 011774 459 AWYSPKRKEG 468 (477)
Q Consensus 459 awYnP~rqeg 468 (477)
+||||..+|-
T Consensus 2 iwynpdpker 11 (46)
T d3bz7a1 2 IWYNPDPKER 11 (46)
T ss_dssp EEECSSTTCT
T ss_pred cccCCCcccc
Confidence 7999998873
No 2
>d2rh2a1 b.34.4.1 (A:21-78) R67 dihydrofolate reductase {Escherichia coli, plasmid PLZ1 [TaxId: 562]}
Probab=6.33 E-value=1.1e+02 Score=21.57 Aligned_cols=12 Identities=33% Similarity=0.999 Sum_probs=9.8
Q ss_pred ceEEEEeccccc
Q 011774 455 GKVVAWYSPKRK 466 (477)
Q Consensus 455 akivawYnP~rq 466 (477)
+.||-|||.++-
T Consensus 20 g~ivgwyct~lt 31 (58)
T d2rh2a1 20 GQIVGWYCTNLT 31 (58)
T ss_dssp EEEEEEECCSSC
T ss_pred ceEeEEEEcccc
Confidence 479999998864
No 3
>d1qfha2 b.1.18.10 (A:750-857) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]}
Probab=6.19 E-value=2.2e+02 Score=21.51 Aligned_cols=27 Identities=22% Similarity=0.021 Sum_probs=18.4
Q ss_pred eEEEEEeeccccccceEEEEecccccc
Q 011774 441 VIYSLSYSLRLLRSGKVVAWYSPKRKE 467 (477)
Q Consensus 441 ~iy~leyslrtlgSakivawYnP~rqe 467 (477)
=.|.+.|--+.-|...|-+.|+=++=.
T Consensus 54 Gty~v~y~p~~~G~y~v~V~~~g~~I~ 80 (108)
T d1qfha2 54 GTYTAAYSLVGNGRFSTGVKLNGKHIE 80 (108)
T ss_dssp SEEEEEEEEESSEEEEEEEEETTEECB
T ss_pred CEEEEEEEECcceeEEEEEEECCEECC
Confidence 357788877777777777777654433
No 4
>d1t16a_ f.4.3.4 (A:) Long-chain fatty acid transport protein FadL {Escherichia coli [TaxId: 562]}
Probab=6.04 E-value=4.1e+02 Score=22.62 Aligned_cols=31 Identities=6% Similarity=-0.074 Sum_probs=19.5
Q ss_pred cccccccccccccceeeeeecCCcceEEEeeee
Q 011774 132 AAKHVLDKSLYSVGLCSQLSIGPSTSLLWSTER 164 (477)
Q Consensus 132 ~~k~l~D~SlyalG~~s~l~l~p~ttLl~Sle~ 164 (477)
..++.-|...+++|+ |..+.++.+|.++...
T Consensus 317 ~~~~~~~~~~~~~G~--ey~~~~~l~lR~Gy~y 347 (427)
T d1t16a_ 317 KHEGFKDAYRIALGT--TYYYDDNWTFRTGIAF 347 (427)
T ss_dssp EECCCCCEEEEEEEE--EECCSSSEEEEEEEEE
T ss_pred ccccccceEEEEEEE--EEEecccEEEEEEEEE
Confidence 345555655655665 5667788888876543
No 5
>d1ukga_ b.29.1.1 (A:) Legume lectin {Bloodwood tree (Pterocarpus angolensis) [TaxId: 182271]}
Probab=4.93 E-value=3.6e+02 Score=22.45 Aligned_cols=63 Identities=10% Similarity=0.262 Sum_probs=37.8
Q ss_pred ceeeEEEeecC-CCCCceeEeeEEecCCCCCccCCCCCCCCccCCCCceeeEeeeeeecceecccCCCc
Q 011774 208 ESVSLNVASLA-SDSGLRYRFGIQKNGGQPESANAIDGEPPAALMPGLCAKAAFSYEQRKDMWRNKETK 275 (477)
Q Consensus 208 ~S~s~~laS~~-~~sGlsY~~g~~~~~g~p~~~n~~t~r~P~~LLPgl~~qaa~S~~k~~~LWrgk~~~ 275 (477)
++++..+.+-. .+..|.++-.+...++..+.........+. .+-.+.|-|++.+.||......
T Consensus 2 ~~~sF~f~~F~~~~~~l~l~G~A~i~~~~i~LT~~~~~~~~~-----~~~~G~~~y~~Pi~l~~~~~~~ 65 (241)
T d1ukga_ 2 DSLSFGFPTFPSDQKNLIFQGDAQIKNNAVQLTKTDSNGNPV-----ASTVGRILFSAQVHLWEKSSSR 65 (241)
T ss_dssp CEEEEEESSCCSCCSSEEEEETCEEETTEEECSCBCTTSCBC-----SSEEEEEEESSCEECEETTTTE
T ss_pred ccEEEEeCCCCCCCCCEEEeeeEEEeCCEEEeCCCCCCCCcc-----ccceEEEEeCCCeecccCCCCc
Confidence 46666666654 245677776565544444433332222221 1456789999999999987554
No 6
>d1w9sa_ b.18.1.10 (A:) Hypothetical protein BH0236 {Bacillus halodurans [TaxId: 86665]}
Probab=4.18 E-value=2.5e+02 Score=21.55 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=19.1
Q ss_pred ccceEEEEeccccccceEEEEee
Q 011774 453 RSGKVVAWYSPKRKEGMIELRLF 475 (477)
Q Consensus 453 gSakivawYnP~rqegmveLRif 475 (477)
|..++.++|.-....|.+|||+-
T Consensus 53 G~y~i~~r~As~~~~g~i~l~~d 75 (134)
T d1w9sa_ 53 DASSIEVRVASDTPGGRIEIRTG 75 (134)
T ss_dssp CEEEEEEEEEESSSCEEEEEEES
T ss_pred CcEEEEEEEEccCCCcEEEEEEC
Confidence 67789999976677889999984
No 7
>d1uxxx_ b.18.1.10 (X:) Carbohydrate binding module from xylanase U {Clostridium thermocellum [TaxId: 1515]}
Probab=4.11 E-value=3.7e+02 Score=20.13 Aligned_cols=23 Identities=26% Similarity=0.120 Sum_probs=17.1
Q ss_pred ccceEEEEe-ccccccceEEEEee
Q 011774 453 RSGKVVAWY-SPKRKEGMIELRLF 475 (477)
Q Consensus 453 gSakivawY-nP~rqegmveLRif 475 (477)
|..++.+|| ++.-..+.++||+-
T Consensus 46 G~y~~~~r~as~~~~~~~~~~~~d 69 (125)
T d1uxxx_ 46 GANSFKARVASGADTPTNIQLRLG 69 (125)
T ss_dssp CEEEEEEEEEECCSSCEEEEEEES
T ss_pred CcEEEEEEEECCccCcceEEEEEe
Confidence 556788999 56666777888874
No 8
>d2veaa2 d.110.2.4 (A:327-514) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=3.45 E-value=69 Score=27.29 Aligned_cols=36 Identities=25% Similarity=0.481 Sum_probs=20.5
Q ss_pred eeEEecCCCCC-ccCCCCCCCCccCCCCceeeEeeeeeecceecccC
Q 011774 227 FGIQKNGGQPE-SANAIDGEPPAALMPGLCAKAAFSYEQRKDMWRNK 272 (477)
Q Consensus 227 ~g~~~~~g~p~-~~n~~t~r~P~~LLPgl~~qaa~S~~k~~~LWrgk 272 (477)
.---.|.|+|. .+....+....-|.|+ |+|.+|+.+
T Consensus 119 ~~~v~WAG~P~k~~~~~~~~~~~rLsPR----------~SFe~W~E~ 155 (188)
T d2veaa2 119 LQTVNWGGDPNHAYEATQEDGKIELHPR----------QSFDLWKEI 155 (188)
T ss_dssp CEEEEEESCGGGSEEEEC---CCEEEEC----------SCCCEEEEE
T ss_pred eEEEEeCCCCCCcccCCCCCCCceeCcc----------ccHHHHHHH
Confidence 34457899984 4444222112235566 888999866
No 9
>d1obfo2 d.81.1.1 (O:153-314) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}
Probab=3.30 E-value=1.9e+02 Score=24.09 Aligned_cols=6 Identities=67% Similarity=1.592 Sum_probs=5.0
Q ss_pred eEEEEe
Q 011774 456 KVVAWY 461 (477)
Q Consensus 456 kivawY 461 (477)
|+++||
T Consensus 157 Ki~~WY 162 (162)
T d1obfo2 157 KVSSWY 162 (162)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 788888
No 10
>d1igna2 a.4.1.6 (A:446-594) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.15 E-value=66 Score=27.21 Aligned_cols=14 Identities=29% Similarity=0.496 Sum_probs=11.6
Q ss_pred cCCceeEEEeccccccc
Q 011774 181 LLSHDITLEAAWPQLFI 197 (477)
Q Consensus 181 lp~H~LtlEas~rerf~ 197 (477)
.|.|.++ ||||||=
T Consensus 88 ~P~HT~~---sWRDRfR 101 (149)
T d1igna2 88 HAAHTEN---AWRDRFR 101 (149)
T ss_dssp TTTSCHH---HHHHHHH
T ss_pred Ccccchh---hHHHHHH
Confidence 6899865 8999984
Done!