BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011775
(477 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 111 bits (277), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 101/201 (50%), Gaps = 6/201 (2%)
Query: 274 SYGKDRSAALSRGSVNSEGPGFRV---PGNYVKGIACGGRHSAVITDAGALLTFGWGLYG 330
S+G++++ L G ++ G +K +A G H+A +T+ G L +GWG YG
Sbjct: 134 SWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTEDGDLYGWGWGRYG 193
Query: 331 QCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAXXXXXXXXXXXXXDQ 390
G G D L P V+S G + VA G HTI +S G +Y +
Sbjct: 194 NLGLGDRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLE 253
Query: 391 AETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVFCWGWNKYGQLGLGDVIDRNIPS 450
+P L+A L N +S GARHT + DGK++ WGWNK+GQ+G+G+ +D+ P
Sbjct: 254 DHLIPHKLEA--LSNSFISQISGGARHTXALTSDGKLYGWGWNKFGQVGVGNNLDQCSPV 311
Query: 451 QVTI-EGCVPRNVACGWWHTL 470
QV + V+CGW HTL
Sbjct: 312 QVRFPDDQKVVQVSCGWRHTL 332
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 98/176 (55%), Gaps = 4/176 (2%)
Query: 297 VPGNYVKGIACGGRHSAVITDAGA-LLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIE 355
+ G+ + + CG H+ + +G + ++GWG +G+ G G++ D +P + +L GI+I+
Sbjct: 55 LDGHQIVSVTCGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIK 114
Query: 356 GVAAGLWHTICISSDGDVYAXXXXXXXXXXXXXDQAETLPRLLDAPSLENVHSKSVSCGA 415
+A G H + ++ +G+V + + +P+ + A E + K V+ GA
Sbjct: 115 QIACGDSHCLAVTXEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQA--FEGIRIKXVAAGA 172
Query: 416 RHTAVIADDGKVFCWGWNKYGQLGLGDVIDRNIPSQVTIEGCVPRN-VACGWWHTL 470
HTA + +DG ++ WGW +YG LGLGD DR +P +VT G + VACGW HT+
Sbjct: 173 EHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXVACGWRHTI 228
Score = 101 bits (252), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 110/415 (26%), Positives = 156/415 (37%), Gaps = 70/415 (16%)
Query: 49 VCGGGCGFAMAISDSRKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEAS------IVK 102
+ G ++A+ + +WG +D GQ HG+ E P PT+ S IV
Sbjct: 10 IISAGASHSVALLSGDIVCSWGRGED-GQL-----GHGD-AEDRPSPTQLSALDGHQIVS 62
Query: 103 AAAGWAHCVAVTEGG-EVYTWGWKECVPSGRVFGDLSTGTGLDKDVFERQSSFLTEXXXX 161
G H VA ++ G EVY+WGW + FG L G G D+F
Sbjct: 63 VTCGADHTVAYSQSGXEVYSWGWGD-------FGRL--GHGNSSDLF----------TPL 103
Query: 162 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXISLAKQTAESSSSGDENLSAFPCLVTLNPGV 221
S + GD S P + G+
Sbjct: 104 PIKALHGIRIKQIACGDSHCLAVTXEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI 163
Query: 222 RIATVAAGGRHTLALSDIXXXXXXXXXXXXXXXXXSRIRMVSSPHPIPCIESSYGK---- 277
RI VAAG HT A+++ YG
Sbjct: 164 RIKXVAAGAEHTAAVTEDGDLYGWGW-------------------------GRYGNLGLG 198
Query: 278 DRSAALSRGSVNSEGPGFRVPGNYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGST 337
DR+ L V S G G +ACG RH+ ++ +GAL T+GW YGQ G G
Sbjct: 199 DRTDRLVPERVTSTG------GEKXSXVACGWRHTISVSYSGALYTYGWSKYGQLGHGDL 252
Query: 338 DDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAXXXXXXXXXXXXXDQAETLPRL 397
+D L P+ + +L I ++ G HT ++SDG +Y + + P
Sbjct: 253 EDHLIPHKLEALSNSFISQISGGARHTXALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQ 312
Query: 398 LDAPSLENVHSKSVSCGARHTAVIADDGKVFCWGWNKYGQLGLGDVIDRNIPSQV 452
+ P + V VSCG RHT + + VF WG GQLG+G+ +DRN P +
Sbjct: 313 VRFPDDQKV--VQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKII 365
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 77/167 (46%), Gaps = 4/167 (2%)
Query: 305 IACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHT 364
I+ G HS + + ++G G GQ G G +D SP +S+L G QI V G HT
Sbjct: 11 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 70
Query: 365 ICISSDG-DVYAXXXXXXXXXXXXXDQAETLPRLLDAPSLENVHSKSVSCGARHTAVIAD 423
+ S G +VY+ P L +L + K ++CG H +
Sbjct: 71 VAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTP--LPIKALHGIRIKQIACGDSHCLAVTX 128
Query: 424 DGKVFCWGWNKYGQLGLGDVIDRNIPSQV-TIEGCVPRNVACGWWHT 469
+G+V WG N+ GQLGLGD D +P ++ EG + VA G HT
Sbjct: 129 EGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHT 175
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 66/296 (22%), Positives = 102/296 (34%), Gaps = 51/296 (17%)
Query: 85 HGEIPEPF-PLPTEA----SIVKAAAGWAHCVAVTEGGEVYTWGWKECVPSGRVFGDLST 139
HG + F PLP +A I + A G +HC+AVT GEV +WG + G L
Sbjct: 93 HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTXEGEVQSWGRNQN-------GQLGL 145
Query: 140 GTGLDKDVFERQSSFLTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISLAKQTAE 199
G D V ++ +F E + L
Sbjct: 146 GDTEDSLVPQKIQAF--EGIRIKXVAAGAEHTAAVTEDGDLYGWGWGRYGNLGL------ 197
Query: 200 SSSSGDENLSAFPCLVTLNPGVRIATVAAGGRHTLALSDIXXXXXXXXXXXXXXXXXSRI 259
GD P VT G + + VA G RHT+++S +
Sbjct: 198 ----GDRTDRLVPERVTSTGGEKXSXVACGWRHTISVS-YSGALYTYGWSKYGQLGHGDL 252
Query: 260 RMVSSPHPIPCIESSYGKDRSA-ALSRGSVNSEGPGF----------------------- 295
PH + + +S+ S A ++ S+G +
Sbjct: 253 EDHLIPHKLEALSNSFISQISGGARHTXALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQ 312
Query: 296 -RVPGNY-VKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSL 349
R P + V ++CG RH+ +T+ + +G G GQ G G + D P + +L
Sbjct: 313 VRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 368
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 101/202 (50%), Gaps = 6/202 (2%)
Query: 273 SSYGKDRSAALSRGSVNSEGPGFRV---PGNYVKGIACGGRHSAVITDAGALLTFGWGLY 329
S+G++++ L G ++ G +K +A G H+A +T+ G L +GWG Y
Sbjct: 131 QSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRY 190
Query: 330 GQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAXXXXXXXXXXXXXD 389
G G G D L P V+S G ++ VA G HTI +S G +Y
Sbjct: 191 GNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDL 250
Query: 390 QAETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVFCWGWNKYGQLGLGDVIDRNIP 449
+ +P L+A L N +S G RHT + DGK++ WGWNK+GQ+G+G+ +D+ P
Sbjct: 251 EDHLIPHKLEA--LSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSP 308
Query: 450 SQVTI-EGCVPRNVACGWWHTL 470
QV + V+CGW HTL
Sbjct: 309 VQVRFPDDQKVVQVSCGWRHTL 330
Score = 108 bits (270), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 98/176 (55%), Gaps = 4/176 (2%)
Query: 297 VPGNYVKGIACGGRHSAVITDAGA-LLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIE 355
+ G+ + + CG H+ + +G + ++GWG +G+ G G++ D +P + +L GI+I+
Sbjct: 53 LDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIK 112
Query: 356 GVAAGLWHTICISSDGDVYAXXXXXXXXXXXXXDQAETLPRLLDAPSLENVHSKSVSCGA 415
+A G H + ++ +G+V + + +P+ + A E + K V+ GA
Sbjct: 113 QIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQA--FEGIRIKMVAAGA 170
Query: 416 RHTAVIADDGKVFCWGWNKYGQLGLGDVIDRNIPSQVTIEGCVPRN-VACGWWHTL 470
HTA + +DG ++ WGW +YG LGLGD DR +P +VT G + VACGW HT+
Sbjct: 171 EHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTI 226
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 109/415 (26%), Positives = 157/415 (37%), Gaps = 70/415 (16%)
Query: 49 VCGGGCGFAMAISDSRKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEAS------IVK 102
+ G ++A+ + +WG +D GQ HG+ E P PT+ S IV
Sbjct: 8 IISAGASHSVALLSGDIVCSWGRGED-GQL-----GHGD-AEDRPSPTQLSALDGHQIVS 60
Query: 103 AAAGWAHCVAVTEGG-EVYTWGWKECVPSGRVFGDLSTGTGLDKDVFERQSSFLTEXXXX 161
G H VA ++ G EVY+WGW + FG L G G D+F
Sbjct: 61 VTCGADHTVAYSQSGMEVYSWGWGD-------FGRL--GHGNSSDLF----------TPL 101
Query: 162 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXISLAKQTAESSSSGDENLSAFPCLVTLNPGV 221
S + GD S P + G+
Sbjct: 102 PIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI 161
Query: 222 RIATVAAGGRHTLALSDIXXXXXXXXXXXXXXXXXSRIRMVSSPHPIPCIESSYGK---- 277
RI VAAG HT A+++ YG
Sbjct: 162 RIKMVAAGAEHTAAVTEDGDLYGWGW-------------------------GRYGNLGLG 196
Query: 278 DRSAALSRGSVNSEGPGFRVPGNYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGST 337
DR+ L V S G G + +ACG RH+ ++ +GAL T+GW YGQ G G
Sbjct: 197 DRTDRLVPERVTSTG------GEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDL 250
Query: 338 DDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAXXXXXXXXXXXXXDQAETLPRL 397
+D L P+ + +L I ++ G HT+ ++SDG +Y + + P
Sbjct: 251 EDHLIPHKLEALSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQ 310
Query: 398 LDAPSLENVHSKSVSCGARHTAVIADDGKVFCWGWNKYGQLGLGDVIDRNIPSQV 452
+ P + V VSCG RHT + + VF WG GQLG+G+ +DRN P +
Sbjct: 311 VRFPDDQKV--VQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKII 363
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 77/167 (46%), Gaps = 4/167 (2%)
Query: 305 IACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHT 364
I+ G HS + + ++G G GQ G G +D SP +S+L G QI V G HT
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 68
Query: 365 ICISSDG-DVYAXXXXXXXXXXXXXDQAETLPRLLDAPSLENVHSKSVSCGARHTAVIAD 423
+ S G +VY+ P L +L + K ++CG H +
Sbjct: 69 VAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTP--LPIKALHGIRIKQIACGDSHCLAVTM 126
Query: 424 DGKVFCWGWNKYGQLGLGDVIDRNIPSQV-TIEGCVPRNVACGWWHT 469
+G+V WG N+ GQLGLGD D +P ++ EG + VA G HT
Sbjct: 127 EGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHT 173
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 64/296 (21%), Positives = 101/296 (34%), Gaps = 51/296 (17%)
Query: 85 HGEIPEPF-PLPTEA----SIVKAAAGWAHCVAVTEGGEVYTWGWKECVPSGRVFGDLST 139
HG + F PLP +A I + A G +HC+AVT GEV +WG + G L
Sbjct: 91 HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQN-------GQLGL 143
Query: 140 GTGLDKDVFERQSSFLTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISLAKQTAE 199
G D V ++ +F E + L
Sbjct: 144 GDTEDSLVPQKIQAF--EGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGL------ 195
Query: 200 SSSSGDENLSAFPCLVTLNPGVRIATVAAGGRHTLALSDIXXXXXXXXXXXXXXXXXSRI 259
GD P VT G +++ VA G RHT+++S +
Sbjct: 196 ----GDRTDRLVPERVTSTGGEKMSMVACGWRHTISVS-YSGALYTYGWSKYGQLGHGDL 250
Query: 260 RMVSSPHPIPCIESSYGKDRSAALSRG-SVNSEGPGF----------------------- 295
PH + + +S+ S ++ S+G +
Sbjct: 251 EDHLIPHKLEALSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQ 310
Query: 296 -RVPGNY-VKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSL 349
R P + V ++CG RH+ +T+ + +G G GQ G G + D P + +L
Sbjct: 311 VRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 366
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 101/201 (50%), Gaps = 6/201 (2%)
Query: 274 SYGKDRSAALSRGSVNSEGPGFRV---PGNYVKGIACGGRHSAVITDAGALLTFGWGLYG 330
S+G++++ L G ++ G +K +A G H+A +T+ G L +GWG YG
Sbjct: 144 SWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYG 203
Query: 331 QCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAXXXXXXXXXXXXXDQ 390
G G D L P V+S G ++ VA G HTI +S G +Y +
Sbjct: 204 NLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLE 263
Query: 391 AETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVFCWGWNKYGQLGLGDVIDRNIPS 450
+P L+A L N +S G RHT + DGK++ WGWNK+GQ+G+G+ +D+ P
Sbjct: 264 DHLIPHKLEA--LSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPV 321
Query: 451 QVTI-EGCVPRNVACGWWHTL 470
QV + V+CGW HTL
Sbjct: 322 QVRFPDDQKVVQVSCGWRHTL 342
Score = 108 bits (270), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 98/176 (55%), Gaps = 4/176 (2%)
Query: 297 VPGNYVKGIACGGRHSAVITDAG-ALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIE 355
+ G+ + + CG H+ + +G + ++GWG +G+ G G++ D +P + +L GI+I+
Sbjct: 65 LDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIK 124
Query: 356 GVAAGLWHTICISSDGDVYAXXXXXXXXXXXXXDQAETLPRLLDAPSLENVHSKSVSCGA 415
+A G H + ++ +G+V + + +P+ + A E + K V+ GA
Sbjct: 125 QIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQA--FEGIRIKMVAAGA 182
Query: 416 RHTAVIADDGKVFCWGWNKYGQLGLGDVIDRNIPSQVTIEGCVPRN-VACGWWHTL 470
HTA + +DG ++ WGW +YG LGLGD DR +P +VT G + VACGW HT+
Sbjct: 183 EHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTI 238
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 109/412 (26%), Positives = 156/412 (37%), Gaps = 70/412 (16%)
Query: 49 VCGGGCGFAMAISDSRKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEAS------IVK 102
+ G ++A+ + +WG +D GQ HG+ E P PT+ S IV
Sbjct: 20 IISAGASHSVALLSGDIVCSWGRGED-GQL-----GHGD-AEDRPSPTQLSALDGHQIVS 72
Query: 103 AAAGWAHCVAVTEGG-EVYTWGWKECVPSGRVFGDLSTGTGLDKDVFERQSSFLTEXXXX 161
G H VA ++ G EVY+WGW + FG L G G D+F
Sbjct: 73 VTCGADHTVAYSQSGMEVYSWGWGD-------FGRL--GHGNSSDLF----------TPL 113
Query: 162 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXISLAKQTAESSSSGDENLSAFPCLVTLNPGV 221
S + GD S P + G+
Sbjct: 114 PIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI 173
Query: 222 RIATVAAGGRHTLALSDIXXXXXXXXXXXXXXXXXSRIRMVSSPHPIPCIESSYGK---- 277
RI VAAG HT A+++ YG
Sbjct: 174 RIKMVAAGAEHTAAVTEDGDLYGWGW-------------------------GRYGNLGLG 208
Query: 278 DRSAALSRGSVNSEGPGFRVPGNYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGST 337
DR+ L V S G G + +ACG RH+ ++ +GAL T+GW YGQ G G
Sbjct: 209 DRTDRLVPERVTSTG------GEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDL 262
Query: 338 DDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAXXXXXXXXXXXXXDQAETLPRL 397
+D L P+ + +L I ++ G HT+ ++SDG +Y + + P
Sbjct: 263 EDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQ 322
Query: 398 LDAPSLENVHSKSVSCGARHTAVIADDGKVFCWGWNKYGQLGLGDVIDRNIP 449
+ P + V VSCG RHT + + VF WG GQLG+G+ +DRN P
Sbjct: 323 VRFPDDQKV--VQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFP 372
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 77/167 (46%), Gaps = 4/167 (2%)
Query: 305 IACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHT 364
I+ G HS + + ++G G GQ G G +D SP +S+L G QI V G HT
Sbjct: 21 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 80
Query: 365 ICISSDG-DVYAXXXXXXXXXXXXXDQAETLPRLLDAPSLENVHSKSVSCGARHTAVIAD 423
+ S G +VY+ P L +L + K ++CG H +
Sbjct: 81 VAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTP--LPIKALHGIRIKQIACGDSHCLAVTM 138
Query: 424 DGKVFCWGWNKYGQLGLGDVIDRNIPSQV-TIEGCVPRNVACGWWHT 469
+G+V WG N+ GQLGLGD D +P ++ EG + VA G HT
Sbjct: 139 EGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHT 185
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 64/296 (21%), Positives = 101/296 (34%), Gaps = 51/296 (17%)
Query: 85 HGEIPEPF-PLPTEA----SIVKAAAGWAHCVAVTEGGEVYTWGWKECVPSGRVFGDLST 139
HG + F PLP +A I + A G +HC+AVT GEV +WG + G L
Sbjct: 103 HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQN-------GQLGL 155
Query: 140 GTGLDKDVFERQSSFLTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISLAKQTAE 199
G D V ++ +F E + L
Sbjct: 156 GDTEDSLVPQKIQAF--EGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGL------ 207
Query: 200 SSSSGDENLSAFPCLVTLNPGVRIATVAAGGRHTLALSDIXXXXXXXXXXXXXXXXXSRI 259
GD P VT G +++ VA G RHT+++S +
Sbjct: 208 ----GDRTDRLVPERVTSTGGEKMSMVACGWRHTISVS-YSGALYTYGWSKYGQLGHGDL 262
Query: 260 RMVSSPHPIPCIESSYGKDRSAALSRG-SVNSEGPGF----------------------- 295
PH + + +S+ S ++ S+G +
Sbjct: 263 EDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQ 322
Query: 296 -RVPGNY-VKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSL 349
R P + V ++CG RH+ +T+ + +G G GQ G G + D P + +L
Sbjct: 323 VRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 378
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 101/202 (50%), Gaps = 6/202 (2%)
Query: 273 SSYGKDRSAALSRGSVNSEGPGFRV---PGNYVKGIACGGRHSAVITDAGALLTFGWGLY 329
S+G++++ L G ++ G +K +A G H+A +T+ G L +GWG Y
Sbjct: 131 QSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRY 190
Query: 330 GQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAXXXXXXXXXXXXXD 389
G G G D L P V+S G ++ VA G HTI +S G +Y
Sbjct: 191 GNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDL 250
Query: 390 QAETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVFCWGWNKYGQLGLGDVIDRNIP 449
+ +P L+A L N +S G RHT + DGK++ WGWNK+GQ+G+G+ +D+ P
Sbjct: 251 EDHLIPHKLEA--LSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSP 308
Query: 450 SQVTI-EGCVPRNVACGWWHTL 470
QV + V+CGW HTL
Sbjct: 309 VQVRFPDDQKVVQVSCGWRHTL 330
Score = 108 bits (269), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 98/176 (55%), Gaps = 4/176 (2%)
Query: 297 VPGNYVKGIACGGRHSAVITDAG-ALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIE 355
+ G+ + + CG H+ + +G + ++GWG +G+ G G++ D +P + +L GI+I+
Sbjct: 53 LDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIK 112
Query: 356 GVAAGLWHTICISSDGDVYAXXXXXXXXXXXXXDQAETLPRLLDAPSLENVHSKSVSCGA 415
+A G H + ++ +G+V + + +P+ + A E + K V+ GA
Sbjct: 113 QIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQA--FEGIRIKMVAAGA 170
Query: 416 RHTAVIADDGKVFCWGWNKYGQLGLGDVIDRNIPSQVTIEGCVPRN-VACGWWHTL 470
HTA + +DG ++ WGW +YG LGLGD DR +P +VT G + VACGW HT+
Sbjct: 171 EHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTI 226
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 109/412 (26%), Positives = 156/412 (37%), Gaps = 70/412 (16%)
Query: 49 VCGGGCGFAMAISDSRKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEAS------IVK 102
+ G ++A+ + +WG +D GQ HG+ E P PT+ S IV
Sbjct: 8 IISAGASHSVALLSGDIVCSWGRGED-GQL-----GHGD-AEDRPSPTQLSALDGHQIVS 60
Query: 103 AAAGWAHCVAVTEGG-EVYTWGWKECVPSGRVFGDLSTGTGLDKDVFERQSSFLTEXXXX 161
G H VA ++ G EVY+WGW + FG L G G D+F
Sbjct: 61 VTCGADHTVAYSQSGMEVYSWGWGD-------FGRL--GHGNSSDLF----------TPL 101
Query: 162 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXISLAKQTAESSSSGDENLSAFPCLVTLNPGV 221
S + GD S P + G+
Sbjct: 102 PIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI 161
Query: 222 RIATVAAGGRHTLALSDIXXXXXXXXXXXXXXXXXSRIRMVSSPHPIPCIESSYGK---- 277
RI VAAG HT A+++ YG
Sbjct: 162 RIKMVAAGAEHTAAVTEDGDLYGWGW-------------------------GRYGNLGLG 196
Query: 278 DRSAALSRGSVNSEGPGFRVPGNYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGST 337
DR+ L V S G G + +ACG RH+ ++ +GAL T+GW YGQ G G
Sbjct: 197 DRTDRLVPERVTSTG------GEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDL 250
Query: 338 DDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAXXXXXXXXXXXXXDQAETLPRL 397
+D L P+ + +L I ++ G HT+ ++SDG +Y + + P
Sbjct: 251 EDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQ 310
Query: 398 LDAPSLENVHSKSVSCGARHTAVIADDGKVFCWGWNKYGQLGLGDVIDRNIP 449
+ P + V VSCG RHT + + VF WG GQLG+G+ +DRN P
Sbjct: 311 VRFPDDQKV--VQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFP 360
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 77/167 (46%), Gaps = 4/167 (2%)
Query: 305 IACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHT 364
I+ G HS + + ++G G GQ G G +D SP +S+L G QI V G HT
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 68
Query: 365 ICISSDG-DVYAXXXXXXXXXXXXXDQAETLPRLLDAPSLENVHSKSVSCGARHTAVIAD 423
+ S G +VY+ P L +L + K ++CG H +
Sbjct: 69 VAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTP--LPIKALHGIRIKQIACGDSHCLAVTM 126
Query: 424 DGKVFCWGWNKYGQLGLGDVIDRNIPSQV-TIEGCVPRNVACGWWHT 469
+G+V WG N+ GQLGLGD D +P ++ EG + VA G HT
Sbjct: 127 EGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHT 173
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 64/296 (21%), Positives = 101/296 (34%), Gaps = 51/296 (17%)
Query: 85 HGEIPEPF-PLPTEA----SIVKAAAGWAHCVAVTEGGEVYTWGWKECVPSGRVFGDLST 139
HG + F PLP +A I + A G +HC+AVT GEV +WG + G L
Sbjct: 91 HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQN-------GQLGL 143
Query: 140 GTGLDKDVFERQSSFLTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISLAKQTAE 199
G D V ++ +F E + L
Sbjct: 144 GDTEDSLVPQKIQAF--EGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGL------ 195
Query: 200 SSSSGDENLSAFPCLVTLNPGVRIATVAAGGRHTLALSDIXXXXXXXXXXXXXXXXXSRI 259
GD P VT G +++ VA G RHT+++S +
Sbjct: 196 ----GDRTDRLVPERVTSTGGEKMSMVACGWRHTISVS-YSGALYTYGWSKYGQLGHGDL 250
Query: 260 RMVSSPHPIPCIESSYGKDRSAALSRG-SVNSEGPGF----------------------- 295
PH + + +S+ S ++ S+G +
Sbjct: 251 EDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQ 310
Query: 296 -RVPGNY-VKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSL 349
R P + V ++CG RH+ +T+ + +G G GQ G G + D P + +L
Sbjct: 311 VRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 366
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 4/150 (2%)
Query: 305 IACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVA--AGLW 362
+A GG HSA +T AG L T+G G YG+ G ++D+L P V +L G ++ +A +G
Sbjct: 164 VAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDA 223
Query: 363 HTICISSDGDVYAXXXXXXXXXXXXXDQAETLPRLLDAPSLENVHSKSVSCGARHTAVIA 422
T+C++ D V++ +P +D SL + V CG++ + +
Sbjct: 224 QTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKID--SLTGLGVVKVECGSQFSVALT 281
Query: 423 DDGKVFCWGWNKYGQLGLGDVIDRNIPSQV 452
G V+ WG Y +LG G P QV
Sbjct: 282 KSGAVYTWGKGDYHRLGHGSDDHVRRPRQV 311
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 3/168 (1%)
Query: 301 YVKGIAC--GGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVA 358
++K +A GG+H ++ G + ++G G+ G G+ P + SL GI++ VA
Sbjct: 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVA 165
Query: 359 AGLWHTICISSDGDVYAXXXXXXXXXXXXXDQAETLPRLLDAPSLENVHSKSVSCGARHT 418
AG H+ C+++ GD+Y + + P+L++A V + G T
Sbjct: 166 AGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQT 225
Query: 419 AVIADDGKVFCWGWNKYGQLGLGDVIDRNIPSQV-TIEGCVPRNVACG 465
+ DD V+ WG YG+LG G +P ++ ++ G V CG
Sbjct: 226 LCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG 273
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 79/177 (44%), Gaps = 5/177 (2%)
Query: 297 VPGNYVKGIACGG--RHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQI 354
+ G+ V IACG + +TD + ++G G YG+ G+G +D P + SL G+ +
Sbjct: 208 LQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGV 267
Query: 355 EGVAAGLWHTICISSDGDVYAXXXXXXXXXXXXXDQAETLPRLLDAPSLENVHSKSVSCG 414
V G ++ ++ G VY D PR + L+ +++ G
Sbjct: 268 VKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQG--LQGKKVIAIATG 325
Query: 415 ARHTAVIADDGKVFCWGWNKYGQLGLGDVIDRNIPSQV-TIEGCVPRNVACGWWHTL 470
+ H +DG+V+ WG N GQLG G P V ++G VACG HTL
Sbjct: 326 SLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTL 382
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 53 GCGFAMAISDSRKLITWGSTD--DLGQSYVTSGKHGEIPEPFPLPTEASIVKAAAGWAHC 110
G F++A++ S + TWG D LG S H P ++ A G HC
Sbjct: 273 GSQFSVALTKSGAVYTWGKGDYHRLGHG---SDDHVRRPRQVQGLQGKKVIAIATGSLHC 329
Query: 111 VAVTEGGEVYTWG 123
V TE GEVYTWG
Sbjct: 330 VCCTEDGEVYTWG 342
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 77/165 (46%), Gaps = 7/165 (4%)
Query: 309 GRHSAVITDAGALLTFGWGLYGQCG--QGSTDDELSP-NCVSSLLGIQIEGVAAGLWHTI 365
GR + +G + +G GQ G +G+ +P +++L +Q+ G L+
Sbjct: 10 GRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLF--- 66
Query: 366 CISSDGDVYAXXXXXXXXXXXXXDQAETLPRLLDAPSLENVHSKSVSCGARHTAVIADDG 425
+++DG +YA ++ + P LL++ + +V+ G +H ++ +G
Sbjct: 67 AVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEG 126
Query: 426 KVFCWGWNKYGQLGLGDVIDRNIPSQV-TIEGCVPRNVACGWWHT 469
+V+ WG + G+LG G+ + P + ++ G +VA G H+
Sbjct: 127 EVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHS 171
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%)
Query: 297 VPGNYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEG 356
+ G V IA G H T+ G + T+G GQ G G+T+ P V++L G ++
Sbjct: 314 LQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNR 373
Query: 357 VAAGLWHTICISS 369
VA G HT+ S+
Sbjct: 374 VACGSAHTLAWST 386
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 50 CGGGCGFAMAISDSRKLITWGSTDDLGQSYVTSGKHG----EIPEPFPLPTEASIVKAAA 105
CG G + ++D + +WG D Y G+ G ++P T +VK
Sbjct: 218 CGSGDAQTLCLTDDDTVWSWGDGD-----YGKLGRGGSDGCKVPMKIDSLTGLGVVKVEC 272
Query: 106 GWAHCVAVTEGGEVYTWG 123
G VA+T+ G VYTWG
Sbjct: 273 GSQFSVALTKSGAVYTWG 290
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 58 MAISDSRKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEASI--VKAAAGWAHCVAVTE 115
+A+S ++ +WG +D + G P + + I V AAG AH VT
Sbjct: 120 LALSSEGEVYSWGEAED---GKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTA 176
Query: 116 GGEVYTWG 123
G++YTWG
Sbjct: 177 AGDLYTWG 184
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 101 VKAAAGWAHCVAVTEGGEVYTWGWKE 126
V +G HC+A++ GEVY+WG E
Sbjct: 110 VAVNSGGKHCLALSSEGEVYSWGEAE 135
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 28/188 (14%)
Query: 301 YVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDE----LSPNCVSSLLGIQIEG 356
+VK IA G H +T L+++G +GQCG ++ P ++ + I
Sbjct: 258 HVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRS 317
Query: 357 VAAGLWHTICISSDGDVYAXXXXXXXXXXXXXD------------QAETLP---RLLDAP 401
+AAG H++ +S DGD+Y+ D +A +P +L + P
Sbjct: 318 IAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP 377
Query: 402 SLENVHSKSVSCGARHTAVIADDGKVFCWGWNKYGQLGLGDV-IDRNIPSQVTIEGCVPR 460
KSV+ G+ H+ +A +G + WG+ + +GLG D +P+++
Sbjct: 378 KF-----KSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDH 432
Query: 461 N---VACG 465
N V CG
Sbjct: 433 NIILVGCG 440
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 69/163 (42%), Gaps = 14/163 (8%)
Query: 323 TFGWGLYGQCGQG-------STDDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYA 375
+ WG + +C +G + +P V + I +A G H + + +G V+A
Sbjct: 169 VYAWGTF-RCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFA 227
Query: 376 XXXXXXXXXXXXXDQAETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVFCWGWNKY 435
+ L + LD H K ++ G H + D K+ WG N++
Sbjct: 228 WGNGQQNQLGRKVMERFRL-KTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQF 286
Query: 436 GQLGLGDVIDR----NIPSQVTI-EGCVPRNVACGWWHTLLLA 473
GQ G+ + ++ P ++ + + V R++A G H+L+L+
Sbjct: 287 GQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILS 329
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 22/49 (44%)
Query: 83 GKHGEIPEPFPLPTEASIVKAAAGWAHCVAVTEGGEVYTWGWKECVPSG 131
GK +P P L AAG H VAV + G Y+WG+ E G
Sbjct: 362 GKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVG 410
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 70 GSTDDLGQSYVTSGKHGEIPE--PFPLPTEASIVKAAAGWAHCVAVTEGGEVYTWGWKEC 127
GS +LG + K + P PF EA I+ A G H +A+ E V++WG +
Sbjct: 37 GSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGCNDV 96
Query: 128 VPSGR 132
GR
Sbjct: 97 GALGR 101
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 74/173 (42%), Gaps = 12/173 (6%)
Query: 307 CGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIE--GVAAGLWHT 364
CG + I+ G + FG Y Q G T+ P ++S G + G HT
Sbjct: 239 CGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHT 298
Query: 365 ICISSDGDVYAXXXXXXXXXXXXXDQAE-TLPRLLDA-PSLENVHSKSVSCGARHTAVIA 422
+C+ S+G Y+ E ++P L+ P++ SV+CGA +
Sbjct: 299 VCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAV-----SSVACGASVGYAVT 353
Query: 423 DDGKVFCWGWNKYGQLGLGDVIDRNIPSQV---TIEGCVPRNVACGWWHTLLL 472
DG+VF WG QLG G D P ++ +E V +V+ G HT+LL
Sbjct: 354 KDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLL 406
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 11/167 (6%)
Query: 311 HSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICISSD 370
H + T+ G +LT G G GQ G G E + S+ ++ A G+ HT+C+S
Sbjct: 19 HRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGM-HTVCLSKS 77
Query: 371 GDVYAX--XXXXXXXXXXXXDQAETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVF 428
G VY+ + +E +P ++ E V VS G HTA + DDG+VF
Sbjct: 78 GQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQ--EKV--VQVSAGDSHTAALTDDGRVF 133
Query: 429 CWG--WNKYGQLGLGDVIDRN-IPSQVTIEGCVPRNVACGWWHTLLL 472
WG + G +GL + + ++ +P QV ++ V + VA G H ++L
Sbjct: 134 LWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVK-VASGNDHLVML 179
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 4/119 (3%)
Query: 308 GGRHSAVITDA-GALLTFGWGLYGQCGQGSTDDELS-PNCVSSLLGIQIEGVAAGLWHTI 365
GG+H V D+ G + G YG+ G G +E S P +S L + VA G
Sbjct: 293 GGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAV--SSVACGASVGY 350
Query: 366 CISSDGDVYAXXXXXXXXXXXXXDQAETLPRLLDAPSLENVHSKSVSCGARHTAVIADD 424
++ DG V+A D+ P + LEN SVS G +HT ++ D
Sbjct: 351 AVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKD 409
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 83/205 (40%), Gaps = 32/205 (15%)
Query: 274 SYGKDRSAALSRGSVNSEGPGFRVPGNY-----VKGIACGGRHSAVITDAGALLTFGWGL 328
S+G + AL R + EG VPG V ++ G H+A +TD G + F WG
Sbjct: 82 SFGCNDEGALGR-DTSVEGSEM-VPGKVELQEKVVQVSAGDSHTAALTDDGRV--FLWGS 137
Query: 329 YGQCGQGSTDDELSPNCVSSLLGIQIE------GVAAGLWHTICISSDGDVYAXXXXXXX 382
+ L P S++ +Q++ VA+G H + +++DGD+Y
Sbjct: 138 FRD--NNGVIGLLEP-MKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQG 194
Query: 383 XXXXXXDQ------AETLPRLL--------DAPSLENVHSKSVSCGARHTAVIADDGKVF 428
+ + L RLL S +V + CGA T I+ +G V+
Sbjct: 195 QLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVY 254
Query: 429 CWGWNKYGQLGLGDVIDRNIPSQVT 453
+G + Y QLG IP +T
Sbjct: 255 GFGLSNYHQLGTPGTESCFIPQNLT 279
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 16/150 (10%)
Query: 297 VPGNYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDD--ELSPNCVSSLLGIQI 354
+P + V+ A GG H+ ++ +G + +FG G G+ ++ + E+ P V L ++
Sbjct: 57 IPEDVVQAEA-GGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVE--LQEKV 113
Query: 355 EGVAAGLWHTICISSDGDVY---AXXXXXXXXXXXXXDQAETLP--RLLDAPSLENVHSK 409
V+AG HT ++ DG V+ + + +P LD P ++
Sbjct: 114 VQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVK----- 168
Query: 410 SVSCGARHTAVIADDGKVFCWGWNKYGQLG 439
V+ G H ++ DG ++ G + GQLG
Sbjct: 169 -VASGNDHLVMLTADGDLYTLGCGEQGQLG 197
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 296 RVPGNYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIE 355
R+P V +ACG +T G + +G G Q G G +D SP ++G Q+E
Sbjct: 335 RLPA--VSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSP---VEMMGKQLE 389
Query: 356 G-----VAAGLWHTICISSDGD 372
V++G HT+ + D +
Sbjct: 390 NRVVLSVSSGGQHTVLLVKDKE 411
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 59 AISDSRKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEASIVKAAAGWAHCVAVTEGGE 118
A++D ++ WGS D + P + + +VK A+G H V +T G+
Sbjct: 125 ALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGD 184
Query: 119 VYTWGWKECVPSGRV---FGDLSTGTGLDK 145
+YT G E GRV F + GL++
Sbjct: 185 LYTLGCGEQGQLGRVPELFANRGGRQGLER 214
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 60 ISDSRKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEASIVKAAAGWAHCVAVTEGGEV 119
+S S ++ ++G D+ TS + E+ P + + +V+ +AG +H A+T+ G V
Sbjct: 74 LSKSGQVYSFGCNDEGALGRDTSVEGSEMV-PGKVELQEKVVQVSAGDSHTAALTDDGRV 132
Query: 120 YTWG 123
+ WG
Sbjct: 133 FLWG 136
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 409 KSVSCGARHTAVIADDGKVFCWGWNKYGQLGLGD-VIDRNIPSQVTIEGCVPRNVA---C 464
KS H + + G V G GQLGLG+ V++R P+ V+I P +V
Sbjct: 11 KSKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSI----PEDVVQAEA 66
Query: 465 GWWHTLLLA 473
G HT+ L+
Sbjct: 67 GGMHTVCLS 75
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 74/173 (42%), Gaps = 12/173 (6%)
Query: 307 CGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIE--GVAAGLWHT 364
CG + I+ G + FG Y Q G T+ P ++S G + G HT
Sbjct: 228 CGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHT 287
Query: 365 ICISSDGDVYAXXXXXXXXXXXXXDQAE-TLPRLLDA-PSLENVHSKSVSCGARHTAVIA 422
+C+ S+G Y+ E ++P L+ P++ SV+CGA +
Sbjct: 288 VCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAV-----SSVACGASVGYAVT 342
Query: 423 DDGKVFCWGWNKYGQLGLGDVIDRNIPSQVT---IEGCVPRNVACGWWHTLLL 472
DG+VF WG QLG G D P ++ +E V +V+ G HT+LL
Sbjct: 343 KDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLL 395
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 11/167 (6%)
Query: 311 HSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICISSD 370
H + T+ G +LT G G GQ G G E + S+ ++ A G+ HT+C+S
Sbjct: 8 HRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGM-HTVCLSKS 66
Query: 371 GDVYAX--XXXXXXXXXXXXDQAETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVF 428
G VY+ + +E +P ++ E V VS G HTA + DDG+VF
Sbjct: 67 GQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQ--EKV--VQVSAGDSHTAALTDDGRVF 122
Query: 429 CWG--WNKYGQLGLGDVIDRN-IPSQVTIEGCVPRNVACGWWHTLLL 472
WG + G +GL + + ++ +P QV ++ V + VA G H ++L
Sbjct: 123 LWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVK-VASGNDHLVML 168
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 4/119 (3%)
Query: 308 GGRHSAVITDA-GALLTFGWGLYGQCGQGSTDDELS-PNCVSSLLGIQIEGVAAGLWHTI 365
GG+H V D+ G + G YG+ G G +E S P +S L + VA G
Sbjct: 282 GGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAV--SSVACGASVGY 339
Query: 366 CISSDGDVYAXXXXXXXXXXXXXDQAETLPRLLDAPSLENVHSKSVSCGARHTAVIADD 424
++ DG V+A D+ P + LEN SVS G +HT ++ D
Sbjct: 340 AVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKD 398
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 83/205 (40%), Gaps = 32/205 (15%)
Query: 274 SYGKDRSAALSRGSVNSEGPGFRVPGNY-----VKGIACGGRHSAVITDAGALLTFGWGL 328
S+G + AL R + EG VPG V ++ G H+A +TD G + F WG
Sbjct: 71 SFGCNDEGALGR-DTSVEGSEM-VPGKVELQEKVVQVSAGDSHTAALTDDGRV--FLWGS 126
Query: 329 YGQCGQGSTDDELSPNCVSSLLGIQIE------GVAAGLWHTICISSDGDVYAXXXXXXX 382
+ L P S++ +Q++ VA+G H + +++DGD+Y
Sbjct: 127 FRD--NNGVIGLLEP-MKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQG 183
Query: 383 XXXXXXDQ------AETLPRLL--------DAPSLENVHSKSVSCGARHTAVIADDGKVF 428
+ + L RLL S +V + CGA T I+ +G V+
Sbjct: 184 QLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVY 243
Query: 429 CWGWNKYGQLGLGDVIDRNIPSQVT 453
+G + Y QLG IP +T
Sbjct: 244 GFGLSNYHQLGTPGTESCFIPQNLT 268
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 16/150 (10%)
Query: 297 VPGNYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDD--ELSPNCVSSLLGIQI 354
+P + V+ A GG H+ ++ +G + +FG G G+ ++ + E+ P V L ++
Sbjct: 46 IPEDVVQAEA-GGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVE--LQEKV 102
Query: 355 EGVAAGLWHTICISSDGDVY---AXXXXXXXXXXXXXDQAETLP--RLLDAPSLENVHSK 409
V+AG HT ++ DG V+ + + +P LD P ++
Sbjct: 103 VQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVK----- 157
Query: 410 SVSCGARHTAVIADDGKVFCWGWNKYGQLG 439
V+ G H ++ DG ++ G + GQLG
Sbjct: 158 -VASGNDHLVMLTADGDLYTLGCGEQGQLG 186
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 296 RVPGNYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIE 355
R+P V +ACG +T G + +G G Q G G +D SP ++G Q+E
Sbjct: 324 RLPA--VSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSP---VEMMGKQLE 378
Query: 356 G-----VAAGLWHTICISSDGD 372
V++G HT+ + D +
Sbjct: 379 NRVVLSVSSGGQHTVLLVKDKE 400
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 59 AISDSRKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEASIVKAAAGWAHCVAVTEGGE 118
A++D ++ WGS D + P + + +VK A+G H V +T G+
Sbjct: 114 ALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGD 173
Query: 119 VYTWGWKECVPSGRV---FGDLSTGTGLDK 145
+YT G E GRV F + GL++
Sbjct: 174 LYTLGCGEQGQLGRVPELFANRGGRQGLER 203
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 60 ISDSRKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEASIVKAAAGWAHCVAVTEGGEV 119
+S S ++ ++G D+ TS + E+ P + + +V+ +AG +H A+T+ G V
Sbjct: 63 LSKSGQVYSFGCNDEGALGRDTSVEGSEMV-PGKVELQEKVVQVSAGDSHTAALTDDGRV 121
Query: 120 YTWG 123
+ WG
Sbjct: 122 FLWG 125
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 10/158 (6%)
Query: 319 GALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGI-QIEGVAAGLWHTICISSDGDVYAX- 376
G +L G G GQ G G +D L +S + GI ++AG H + ++ GD+Y+
Sbjct: 43 GNVLVCGNGDVGQLGLG--EDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFG 100
Query: 377 -XXXXXXXXXXXXDQAETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVFCWGWNKY 435
D +E+ P L+D P + +S G H+A + +DG+VF WG +
Sbjct: 101 CNDEGALGRDTSEDGSESKPDLIDLPG----KALCISAGDSHSACLLEDGRVFAWGSFRD 156
Query: 436 GQLGLGDVIDRNIPSQVTI-EGCVPRNVACGWWHTLLL 472
+G ID N + + + EG V ++A G H ++L
Sbjct: 157 SHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVIL 194
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 10/139 (7%)
Query: 305 IACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDD--ELSPNCVSSLLGIQIEGVAAGLW 362
I+ GG H+ V+T +G + +FG G G+ +++D E P+ + L + ++AG
Sbjct: 80 ISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLID--LPGKALCISAGDS 137
Query: 363 HTICISSDGDVYA--XXXXXXXXXXXXXDQAETLPRLLDAPSLENVHSKSVSCGARHTAV 420
H+ C+ DG V+A D + P L +E S++ GA H +
Sbjct: 138 HSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDL----MEGTVCCSIASGADHLVI 193
Query: 421 IADDGKVFCWGWNKYGQLG 439
+ GKVF G + GQLG
Sbjct: 194 LTTAGKVFTVGCAEQGQLG 212
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 61/166 (36%), Gaps = 18/166 (10%)
Query: 296 RVPGNYVKGIAC-----GGRHSAVITDAGALLTFGWGLYGQCGQGS-----------TDD 339
R P + ++G C G H ++T AG + T G GQ G+ S D
Sbjct: 170 RTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRD 229
Query: 340 ELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAXXXXXXXXXXXXXDQAETLPRLLD 399
L P + E + A + T S V + +
Sbjct: 230 LLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPI 289
Query: 400 APSLENVHSKSVSCGARHTAVIADDGKVFCWGWNKYGQLGLGDVID 445
L+++ + ++ G HT ++ D K G +YG+LGLGDV D
Sbjct: 290 KTELKDI--RHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKD 333
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 305 IACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSS 348
+ CG S +T G L ++G G+ Q G G DDEL P V S
Sbjct: 351 VGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVS 394
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 410 SVSCGARHTAVIADDGKVFCWGWNKYGQLGLGDVIDRNIP 449
SV CG + + DGK++ WG QLG+GD D P
Sbjct: 350 SVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEP 389
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 48 DVCGGGCGFAMAISDSRKLITWGSTDD--LGQSYVTSGKHGEIPEPFPLPTEASIVKAAA 105
D+ GG + ++ S + ++G D+ LG+ G + P+ LP +A + +A
Sbjct: 79 DISAGGM-HNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESK-PDLIDLPGKALCI--SA 134
Query: 106 GWAHCVAVTEGGEVYTWG 123
G +H + E G V+ WG
Sbjct: 135 GDSHSACLLEDGRVFAWG 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,250,930
Number of Sequences: 62578
Number of extensions: 530716
Number of successful extensions: 1092
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 877
Number of HSP's gapped (non-prelim): 132
length of query: 477
length of database: 14,973,337
effective HSP length: 102
effective length of query: 375
effective length of database: 8,590,381
effective search space: 3221392875
effective search space used: 3221392875
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)