Query 011775
Match_columns 477
No_of_seqs 238 out of 2186
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 05:05:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011775.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011775hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 4.2E-52 9.1E-57 393.4 29.8 367 9-475 65-465 (476)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 7E-47 1.5E-51 358.0 26.1 332 56-475 60-410 (476)
3 KOG1427 Uncharacterized conser 100.0 8.7E-42 1.9E-46 302.9 20.0 372 8-475 16-399 (443)
4 KOG1427 Uncharacterized conser 100.0 1.9E-39 4.1E-44 288.1 17.5 284 88-475 46-346 (443)
5 KOG0783 Uncharacterized conser 99.9 3.1E-27 6.7E-32 234.7 16.3 277 57-434 135-417 (1267)
6 KOG0783 Uncharacterized conser 99.9 1.7E-26 3.7E-31 229.5 16.5 302 12-425 142-450 (1267)
7 KOG1428 Inhibitor of type V ad 99.9 6.9E-25 1.5E-29 225.8 23.5 355 9-473 495-893 (3738)
8 KOG1428 Inhibitor of type V ad 99.9 2.8E-20 6E-25 192.4 19.6 209 222-475 526-837 (3738)
9 PF00415 RCC1: Regulator of ch 99.3 3.2E-12 6.9E-17 87.9 4.9 49 424-472 1-51 (51)
10 PF00415 RCC1: Regulator of ch 99.3 7.2E-12 1.6E-16 86.1 5.5 50 318-367 1-51 (51)
11 PF13540 RCC1_2: Regulator of 99.2 2.8E-11 6E-16 72.2 4.5 30 223-252 1-30 (30)
12 PF13540 RCC1_2: Regulator of 99.2 6.7E-11 1.4E-15 70.6 4.9 30 354-383 1-30 (30)
13 KOG0941 E3 ubiquitin protein l 99.0 1.7E-12 3.6E-17 132.0 -9.0 185 211-425 4-197 (850)
14 KOG0941 E3 ubiquitin protein l 99.0 7.3E-12 1.6E-16 127.4 -7.3 170 300-474 14-195 (850)
15 PF11725 AvrE: Pathogenicity f 95.5 0.17 3.6E-06 57.3 12.6 235 223-474 560-813 (1774)
16 KOG3669 Uncharacterized conser 92.3 1.9 4.2E-05 43.7 11.5 69 301-375 228-298 (705)
17 KOG3669 Uncharacterized conser 90.5 5 0.00011 40.9 12.3 121 307-443 190-313 (705)
18 KOG0943 Predicted ubiquitin-pr 90.3 0.051 1.1E-06 58.8 -1.5 83 218-331 426-509 (3015)
19 KOG0943 Predicted ubiquitin-pr 86.0 0.061 1.3E-06 58.2 -4.2 127 299-432 373-504 (3015)
20 PF07569 Hira: TUP1-like enhan 82.5 10 0.00022 34.5 9.1 28 221-248 13-40 (219)
21 PF07569 Hira: TUP1-like enhan 81.5 11 0.00023 34.4 8.9 30 351-380 12-41 (219)
22 PF11725 AvrE: Pathogenicity f 77.5 19 0.00042 41.8 10.7 71 221-319 744-815 (1774)
23 PF02239 Cytochrom_D1: Cytochr 74.5 90 0.0019 30.9 13.8 121 215-376 21-155 (369)
24 smart00706 TECPR Beta propelle 73.1 8.6 0.00019 23.3 4.0 24 222-245 9-33 (35)
25 smart00706 TECPR Beta propelle 72.3 8.2 0.00018 23.4 3.8 25 98-122 8-33 (35)
26 KOG0291 WD40-repeat-containing 70.7 1.6E+02 0.0034 31.7 20.4 36 353-388 522-559 (893)
27 KOG1900 Nuclear pore complex, 66.7 1.2E+02 0.0026 34.7 13.4 46 209-254 229-278 (1311)
28 KOG0315 G-protein beta subunit 62.3 1.3E+02 0.0029 27.8 16.8 25 302-326 170-196 (311)
29 KOG0315 G-protein beta subunit 61.8 1.3E+02 0.0029 27.7 18.3 104 305-434 91-198 (311)
30 KOG0649 WD40 repeat protein [G 61.6 97 0.0021 28.5 9.7 47 351-398 62-109 (325)
31 KOG1900 Nuclear pore complex, 60.8 1.9E+02 0.0042 33.2 13.6 166 234-437 93-276 (1311)
32 PF04762 IKI3: IKI3 family; I 58.7 3.2E+02 0.0068 31.0 16.7 27 221-247 427-455 (928)
33 KOG1408 WD40 repeat protein [F 58.1 1E+02 0.0022 32.8 10.4 25 99-123 219-247 (1080)
34 PLN02153 epithiospecifier prot 55.3 2.1E+02 0.0045 27.8 22.0 18 54-72 24-41 (341)
35 COG4257 Vgb Streptogramin lyas 52.3 45 0.00098 31.2 6.2 97 9-125 70-167 (353)
36 PF12341 DUF3639: Protein of u 51.8 44 0.00096 19.1 3.9 24 221-244 2-25 (27)
37 TIGR03300 assembly_YfgL outer 51.3 2.5E+02 0.0054 27.6 13.6 56 362-430 321-376 (377)
38 PF06739 SBBP: Beta-propeller 45.6 24 0.00052 21.9 2.5 18 362-379 15-32 (38)
39 KOG0293 WD40 repeat-containing 43.4 3.5E+02 0.0076 27.0 11.3 28 353-380 442-471 (519)
40 KOG2055 WD40 repeat protein [G 40.1 4.1E+02 0.0089 26.9 14.1 36 90-125 339-374 (514)
41 COG4257 Vgb Streptogramin lyas 39.4 2.4E+02 0.0052 26.6 8.7 61 49-123 58-121 (353)
42 TIGR01063 gyrA DNA gyrase, A s 39.0 5.9E+02 0.013 28.3 20.7 69 53-123 545-618 (800)
43 KOG1274 WD40 repeat protein [G 38.4 5.9E+02 0.013 28.2 15.1 26 299-324 56-81 (933)
44 KOG2106 Uncharacterized conser 36.3 5E+02 0.011 26.7 13.3 26 222-247 248-274 (626)
45 PRK05560 DNA gyrase subunit A; 35.1 6.7E+02 0.015 27.9 20.5 223 43-376 537-769 (805)
46 PF13418 Kelch_4: Galactose ox 34.0 43 0.00094 21.7 2.5 16 416-431 4-19 (49)
47 TIGR01062 parC_Gneg DNA topois 34.0 5.4E+02 0.012 28.2 11.9 76 44-123 525-603 (735)
48 KOG1034 Transcriptional repres 33.7 1.1E+02 0.0024 29.4 5.8 36 211-246 344-381 (385)
49 PHA03098 kelch-like protein; P 33.6 3.6E+02 0.0078 28.1 10.6 17 231-248 335-351 (534)
50 KOG0646 WD40 repeat protein [G 33.5 5.2E+02 0.011 26.1 16.6 55 56-123 95-151 (476)
51 PF07312 DUF1459: Protein of u 32.9 33 0.00072 25.1 1.8 13 13-25 57-70 (84)
52 PHA02713 hypothetical protein; 32.9 6.1E+02 0.013 26.7 14.9 209 107-431 294-519 (557)
53 cd00058 FGF Acidic and basic f 32.1 2.8E+02 0.006 22.5 7.7 62 304-375 2-63 (123)
54 TIGR03300 assembly_YfgL outer 31.0 5.1E+02 0.011 25.3 14.4 56 310-376 321-376 (377)
55 TIGR01063 gyrA DNA gyrase, A s 30.1 8E+02 0.017 27.3 22.3 122 308-439 649-775 (800)
56 KOG1408 WD40 repeat protein [F 29.2 7.7E+02 0.017 26.7 11.7 26 299-324 217-246 (1080)
57 KOG0289 mRNA splicing factor [ 28.9 6.2E+02 0.013 25.5 12.0 68 362-433 350-419 (506)
58 KOG4693 Uncharacterized conser 28.9 2.9E+02 0.0064 25.8 7.5 65 53-123 79-146 (392)
59 KOG0291 WD40-repeat-containing 28.7 8E+02 0.017 26.8 22.9 123 222-382 299-425 (893)
60 KOG4441 Proteins containing BT 27.8 7.5E+02 0.016 26.2 13.0 25 408-432 506-530 (571)
61 PF00167 FGF: Fibroblast growt 27.7 3.2E+02 0.007 21.9 8.8 65 302-376 2-66 (122)
62 PLN03215 ascorbic acid mannose 27.3 2.8E+02 0.0061 27.5 7.8 61 302-377 162-225 (373)
63 KOG0293 WD40 repeat-containing 27.2 6.5E+02 0.014 25.2 11.3 72 352-434 396-471 (519)
64 KOG1034 Transcriptional repres 27.1 1.5E+02 0.0031 28.6 5.4 56 60-124 325-382 (385)
65 PF01436 NHL: NHL repeat; Int 27.0 1.3E+02 0.0028 17.0 3.4 19 416-434 4-22 (28)
66 PF03785 Peptidase_C25_C: Pept 26.5 2.1E+02 0.0045 21.3 5.0 42 211-254 8-50 (81)
67 smart00442 FGF Acidic and basi 25.6 3.7E+02 0.008 21.9 8.2 65 301-375 3-67 (126)
68 PF03785 Peptidase_C25_C: Pept 25.2 1.1E+02 0.0025 22.7 3.5 32 353-384 17-49 (81)
69 PLN03215 ascorbic acid mannose 24.7 2.9E+02 0.0063 27.4 7.3 62 353-431 161-225 (373)
70 PF09081 DUF1921: Domain of un 23.6 1.1E+02 0.0024 20.0 2.8 21 47-69 29-50 (51)
71 KOG0646 WD40 repeat protein [G 20.7 9E+02 0.019 24.6 17.7 25 353-377 221-245 (476)
72 PRK14131 N-acetylneuraminic ac 20.4 5.9E+02 0.013 25.1 8.9 113 310-431 131-286 (376)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=4.2e-52 Score=393.40 Aligned_cols=367 Identities=27% Similarity=0.461 Sum_probs=283.8
Q ss_pred cceEEEEEeecC-CCCCCCCCc---cccceEecCCCCCCcccccccccccceEEEEecCCcEEEecCCCCCCCccccCC-
Q 011775 9 KMERVVFMWGYL-PGALPQRSP---ILSPLVVRLPLTVGSAWRDVCGGGCGFAMAISDSRKLITWGSTDDLGQSYVTSG- 83 (477)
Q Consensus 9 ~~~~~v~~WG~~-~g~lg~~~~---~~~p~~~~~~~~~~~~i~~v~~g~~~~~~~lt~~G~v~~wG~n~~~gqlg~~~~- 83 (477)
.+...||+||+| .++||.+.. +..|+..+.-.-....|++++||+. |+++|++||+||+||+|. -|+||....
T Consensus 65 ~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~-hsl~ld~Dg~lyswG~N~-~G~Lgr~~~~ 142 (476)
T COG5184 65 VKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGN-HSLGLDHDGNLYSWGDND-DGALGRDIHK 142 (476)
T ss_pred hheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCc-eEEeecCCCCEEEeccCc-cccccccccc
Confidence 367899999999 888888743 3456655544223478999999997 999999999999999996 699986541
Q ss_pred ---------------CCCCCCcccCCCC----CCCEEEEecCcceEEEEecCCcEEEeeCCCCCCCCCccCCCCCCcccc
Q 011775 84 ---------------KHGEIPEPFPLPT----EASIVKAAAGWAHCVAVTEGGEVYTWGWKECVPSGRVFGDLSTGTGLD 144 (477)
Q Consensus 84 ---------------~~~~~p~~v~~~~----~~~i~~Ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~ 144 (477)
.....|..++..+ ..+|++++||+.++++|+++|+||+||.+.++.++....+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s------ 216 (476)
T COG5184 143 DICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNS------ 216 (476)
T ss_pred ccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCcccccccccccccc------
Confidence 1234555555521 337999999999999999999999999887765554322200
Q ss_pred cchhhcccccccccccCCcccccccCCCCCCCCCCCCCcCCCceeeeehhhcccccCCCCCCcccccceEEecCCCCcEE
Q 011775 145 KDVFERQSSFLTEQVSPRSQVSRSSGGTSSGTDGRGSGEEGSKRRRISLAKQTAESSSSGDENLSAFPCLVTLNPGVRIA 224 (477)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~i~~~~~~~i~ 224 (477)
.+...+..|..+. ...|+
T Consensus 217 -----------------------------------------------------------~k~~~~~~p~~v~---~~~i~ 234 (476)
T COG5184 217 -----------------------------------------------------------QKTSIQFTPLKVP---KKAIV 234 (476)
T ss_pred -----------------------------------------------------------ccceeeeeeeecC---chhee
Confidence 1111334454443 44899
Q ss_pred EEEeCCCeEEEEecCCcEEEEeCCCCCcccCCCCCccccCCcccCccccccCCCcccccccCccCCCCCCcccCCCcEEE
Q 011775 225 TVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSEGPGFRVPGNYVKG 304 (477)
Q Consensus 225 ~Ia~G~~h~~aLt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 304 (477)
++++|.+|.++|+++|+||+||+|..||||.....+ ...+.+++.+-. -..|+.
T Consensus 235 qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~-~~~~~lv~~~f~-------------------------i~~i~~ 288 (476)
T COG5184 235 QLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSER-LKLVVLVGDPFA-------------------------IRNIKY 288 (476)
T ss_pred eeccCCceEEEEecCCcEEEecCCcccccCCchhhh-cccccccCChhh-------------------------hhhhhh
Confidence 999999999999999999999999999999876422 223333321111 123889
Q ss_pred EeecCCeEEEEecCCCEEEEeecCCCCCCCCCCC----CcccceeecccCCCcEEEEEecCCeEEEEEcCCcEEEEeCCC
Q 011775 305 IACGGRHSAVITDAGALLTFGWGLYGQCGQGSTD----DELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAFGGNQ 380 (477)
Q Consensus 305 I~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~----~~~~p~~v~~~~~~~i~~i~~G~~hs~alt~~G~vy~wG~n~ 380 (477)
|+||.+|+++|+++|+||+||.|.+||||.+... ....|.....+.+..|.+|++|..|+++|..+|.||+||++.
T Consensus 289 vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~ 368 (476)
T COG5184 289 VACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGD 368 (476)
T ss_pred cccCcceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCc
Confidence 9999999999999999999999999999998221 245677777777778999999999999999999999999999
Q ss_pred CCCcCCCCCCC--cccceeecCCCCCCcceEEEEeCCCeEEEEECCCcEEEEECCCCCCcCCCCCC-CccccEEEe---e
Q 011775 381 FGQLGTGGDQA--ETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVFCWGWNKYGQLGLGDVI-DRNIPSQVT---I 454 (477)
Q Consensus 381 ~gqLG~~~~~~--~~~p~~v~~~~~~~~~i~~i~~G~~hs~al~~~g~vy~wG~n~~gqLG~g~~~-~~~~P~~v~---~ 454 (477)
.+|||..+... ...|+++. ...++.+++||..|+++.+++|+||.||++++|+||+++.. +...|+.++ +
T Consensus 369 ~~qlg~~~~~~~~~~~~~~ls----~~~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~~~~~pt~i~~~~~ 444 (476)
T COG5184 369 RGQLGIQEEITIDVSTPTKLS----VAIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQPLL 444 (476)
T ss_pred cccccCcccceeecCCccccc----cccceEEEEecCccceeeccCCceEEecCchhhhccCCchhhhcccccccccccc
Confidence 99999998443 33444443 12469999999999999999999999999999999999764 456788877 4
Q ss_pred CCCceEEEEecCCeeEEEEcC
Q 011775 455 EGCVPRNVACGWWHTLLLAVP 475 (477)
Q Consensus 455 ~~~~v~~v~~G~~hs~~l~~~ 475 (477)
+...++...||.+++++....
T Consensus 445 ~~~~~i~~g~~~~~~v~~~~~ 465 (476)
T COG5184 445 SGHNIILAGYGNQFSVIEETM 465 (476)
T ss_pred CCCceEEeccCcceEEEecch
Confidence 577889999999998887554
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=7e-47 Score=357.97 Aligned_cols=332 Identities=27% Similarity=0.481 Sum_probs=258.3
Q ss_pred eEEEEecCCcEEEecCCCCCCCccccCCCCC-CCCcccCCC--CCCCEEEEecCcceEEEEecCCcEEEeeCCCCCCCCC
Q 011775 56 FAMAISDSRKLITWGSTDDLGQSYVTSGKHG-EIPEPFPLP--TEASIVKAAAGWAHCVAVTEGGEVYTWGWKECVPSGR 132 (477)
Q Consensus 56 ~~~~lt~~G~v~~wG~n~~~gqlg~~~~~~~-~~p~~v~~~--~~~~i~~Ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~ 132 (477)
|..+++.-..||+||+|. ..+||++..... ..|+..++. +...|++++||..|+++|++||.||+||.|..|+||+
T Consensus 60 ~~~~~~~~~~v~~~Gsn~-~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr 138 (476)
T COG5184 60 HTHLLVKMASVYSWGSNG-MNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGR 138 (476)
T ss_pred chhhhhheeeeEEEecCc-ceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCccccccc
Confidence 666889999999999997 799998765544 677776665 5578999999999999999999999999999999987
Q ss_pred ccCCCCCCcccccchhhcccccccccccCCcccccccCCCCCCCCCCCCCcCCCceeeeehhhcccccCCCCCCcccccc
Q 011775 133 VFGDLSTGTGLDKDVFERQSSFLTEQVSPRSQVSRSSGGTSSGTDGRGSGEEGSKRRRISLAKQTAESSSSGDENLSAFP 212 (477)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 212 (477)
.... +. . .. ..+.....+.+...+|
T Consensus 139 ~~~~---------~~---------------------------------~---~~----------~~~~~~~~~~~~~~tP 163 (476)
T COG5184 139 DIHK---------DI---------------------------------C---DQ----------NNDIIDFDDYELESTP 163 (476)
T ss_pred cccc---------cc---------------------------------c---cc----------cccccccchhhcccCC
Confidence 5320 00 0 00 0000111233355677
Q ss_pred eEEec----CCCCcEEEEEeCCCeEEEEecCCcEEEEeCCCCCcccCCCCC---c--cccCCcccCccccccCCCccccc
Q 011775 213 CLVTL----NPGVRIATVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRI---R--MVSSPHPIPCIESSYGKDRSAAL 283 (477)
Q Consensus 213 ~~i~~----~~~~~i~~Ia~G~~h~~aLt~~G~vy~wG~n~~gqlG~~~~~---~--~~~~p~~i~~~~~~~~~~~~~~~ 283 (477)
..++. ....+|++++||++++++|+++|+||+||....+.++.+... + ....|..++
T Consensus 164 ~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~-------------- 229 (476)
T COG5184 164 FKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP-------------- 229 (476)
T ss_pred ceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccccccceeeeeeeecC--------------
Confidence 77776 122379999999999999999999999999888888776321 1 223333332
Q ss_pred ccCccCCCCCCcccCCCcEEEEeecCCeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCC-cEEEEEecCC
Q 011775 284 SRGSVNSEGPGFRVPGNYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGI-QIEGVAAGLW 362 (477)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~i~~I~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~-~i~~i~~G~~ 362 (477)
...|+++++|.+|.++|+++|+||+||+|..||||....+....+..+..+... .|+.|+||.+
T Consensus 230 ---------------~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~ 294 (476)
T COG5184 230 ---------------KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKD 294 (476)
T ss_pred ---------------chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhhhhhhhcccCcc
Confidence 245999999999999999999999999999999999888776666666544322 4789999999
Q ss_pred eEEEEEcCCcEEEEeCCCCCCcCCCCCCC----cccceeecCCCCCCcceEEEEeCCCeEEEEECCCcEEEEECCCCCCc
Q 011775 363 HTICISSDGDVYAFGGNQFGQLGTGGDQA----ETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVFCWGWNKYGQL 438 (477)
Q Consensus 363 hs~alt~~G~vy~wG~n~~gqLG~~~~~~----~~~p~~v~~~~~~~~~i~~i~~G~~hs~al~~~g~vy~wG~n~~gqL 438 (477)
|++||+++|+||+||.|.+||||.++... ...|.... .+.+..|.+|++|..|+++|..+|.||+||++..+||
T Consensus 295 h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~--~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~ql 372 (476)
T COG5184 295 HSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQ--LLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQL 372 (476)
T ss_pred eEEEEcCCCeEEEeccchhcccccCcccccceeeccccccc--cCCCceEEEEecCcceEEEEecCceEEEecCCccccc
Confidence 99999999999999999999999993321 12333333 2456679999999999999999999999999999999
Q ss_pred CCCC--CCCccccEEEeeCCCceEEEEecCCeeEEEEcC
Q 011775 439 GLGD--VIDRNIPSQVTIEGCVPRNVACGWWHTLLLAVP 475 (477)
Q Consensus 439 G~g~--~~~~~~P~~v~~~~~~v~~v~~G~~hs~~l~~~ 475 (477)
|..+ +.....|+++... .++..++||..|+++.+++
T Consensus 373 g~~~~~~~~~~~~~~ls~~-~~~~~v~~gt~~~~~~t~~ 410 (476)
T COG5184 373 GIQEEITIDVSTPTKLSVA-IKLEQVACGTHHNIARTDD 410 (476)
T ss_pred cCcccceeecCCccccccc-cceEEEEecCccceeeccC
Confidence 9998 4455556555432 3799999999999999876
No 3
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=8.7e-42 Score=302.89 Aligned_cols=372 Identities=22% Similarity=0.344 Sum_probs=280.9
Q ss_pred ccceEEEEEeecC-CC-----CCCCCCccccceEecCCCCCCcccccccccccc-eEEEEecCCcEEEecCCCCCCCccc
Q 011775 8 EKMERVVFMWGYL-PG-----ALPQRSPILSPLVVRLPLTVGSAWRDVCGGGCG-FAMAISDSRKLITWGSTDDLGQSYV 80 (477)
Q Consensus 8 ~~~~~~v~~WG~~-~g-----~lg~~~~~~~p~~~~~~~~~~~~i~~v~~g~~~-~~~~lt~~G~v~~wG~n~~~gqlg~ 80 (477)
+++-|.+...|.- -. ...+......|...+-... .+|+-|+.|-.. |+++|+-+|++|+||+|. .||||.
T Consensus 16 e~~~g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l~g--v~iR~VasG~~aaH~vli~megk~~~wGRNe-kGQLGh 92 (443)
T KOG1427|consen 16 EEKGGEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPLVG--VNIRFVASGCAAAHCVLIDMEGKCYTWGRNE-KGQLGH 92 (443)
T ss_pred hcCCccEEEeccchhhhhcccccccccccccceecccccc--ceEEEEecccchhhEEEEecccceeecccCc-cCccCc
Confidence 3455666666654 11 2233335556766665443 778888765432 899999999999999995 899999
Q ss_pred cCCCCCCCCcccCCCCCCCEEEEecCcceEEEEecCCcEEEeeCCCCCCCCCccCCCCCCcccccchhhccccccccccc
Q 011775 81 TSGKHGEIPEPFPLPTEASIVKAAAGWAHCVAVTEGGEVYTWGWKECVPSGRVFGDLSTGTGLDKDVFERQSSFLTEQVS 160 (477)
Q Consensus 81 ~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (477)
+.......|+.++-.+..+|++.+||++|+++||++|.||.+|.|.+||||.....
T Consensus 93 gD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~------------------------ 148 (443)
T KOG1427|consen 93 GDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAK------------------------ 148 (443)
T ss_pred cchhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccc------------------------
Confidence 98888889999998888999999999999999999999999999999999853211
Q ss_pred CCcccccccCCCCCCCCCCCCCcCCCceeeeehhhcccccCCCCCCcccccceEEecCCCCcEEEEEeCCCeEEEEecCC
Q 011775 161 PRSQVSRSSGGTSSGTDGRGSGEEGSKRRRISLAKQTAESSSSGDENLSAFPCLVTLNPGVRIATVAAGGRHTLALSDIG 240 (477)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~i~~~~~~~i~~Ia~G~~h~~aLt~~G 240 (477)
. ......+|..+ ...|+.|+||.+|++.|+..+
T Consensus 149 -------------------------~------------------~v~s~~~~~~~----~~~v~~v~cga~ftv~l~~~~ 181 (443)
T KOG1427|consen 149 -------------------------N------------------EVESTPLPCVV----SDEVTNVACGADFTVWLSSTE 181 (443)
T ss_pred -------------------------c------------------ccccCCCcccc----CccceeeccccceEEEeeccc
Confidence 0 00011222222 236999999999999999999
Q ss_pred cEEEEeCCCCCcccCCCCCccccCCcccCccccccCCCcccccccCccCCCCCCcccCCCcEEEEeecCCeEEEEecCCC
Q 011775 241 QVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSEGPGFRVPGNYVKGIACGGRHSAVITDAGA 320 (477)
Q Consensus 241 ~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~G~~~~~~lt~~g~ 320 (477)
.|..+|...+||||.+...+.......+..--. .-..+....++.+..|++++||.+|+++++++++
T Consensus 182 si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e-------------~~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkr 248 (443)
T KOG1427|consen 182 SILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYE-------------AQPRPKAIASLDGVQIVKVACGTNHTVAVDKNKR 248 (443)
T ss_pred ceeecCCccccccccCcchhhccccccceeeee-------------cCCCccccccccceeeEEEeccCcceeeecCCcc
Confidence 999999999999999876433222222211110 0000122345666889999999999999999999
Q ss_pred EEEEeecCCCCCCCCCCCCcccceeecccC--CCcEEEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceee
Q 011775 321 LLTFGWGLYGQCGQGSTDDELSPNCVSSLL--GIQIEGVAAGLWHTICISSDGDVYAFGGNQFGQLGTGGDQAETLPRLL 398 (477)
Q Consensus 321 vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~--~~~i~~i~~G~~hs~alt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v 398 (477)
||+||-+-||.||.....+...|.++..+. +.--.++.||+..++++.+-|.||.||.+... + .....|.++
T Consensus 249 VysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~~----g--e~~mypkP~ 322 (443)
T KOG1427|consen 249 VYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKNN----G--EDWMYPKPM 322 (443)
T ss_pred EEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeeccccC----c--ccccCCCch
Confidence 999999999999999999999999887653 33456788999999999999999999987532 1 223456555
Q ss_pred cCCCCCCcceEEEEeCCCeEEEEECCCcEEEEECCCCCCcCCCCC--CCccccEEEe-eCCCceEEEEecCCeeEEEEcC
Q 011775 399 DAPSLENVHSKSVSCGARHTAVIADDGKVFCWGWNKYGQLGLGDV--IDRNIPSQVT-IEGCVPRNVACGWWHTLLLAVP 475 (477)
Q Consensus 399 ~~~~~~~~~i~~i~~G~~hs~al~~~g~vy~wG~n~~gqLG~g~~--~~~~~P~~v~-~~~~~v~~v~~G~~hs~~l~~~ 475 (477)
- .+....+..|.++..|.++ ..|..+..||...+|.++-+.. .....|.+++ +.+..|..|++|..|+++|++.
T Consensus 323 ~--dlsgwnl~~~~~~~~h~~v-~ad~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~l~~i~v~~VamGysHs~vivd~ 399 (443)
T KOG1427|consen 323 M--DLSGWNLRWMDSGSMHHFV-GADSSCISWGHAQYGELLGGPNGQKSSAAPKKVDMLEGIHVMGVAMGYSHSMVIVDR 399 (443)
T ss_pred h--hcCCccCCCcCccceeeee-cccccccccccccccccccCccccccccCccccchhcceeccceeeccceEEEEEcc
Confidence 5 4667788999999998765 4566899999998888755433 3456788888 4578899999999999999875
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=1.9e-39 Score=288.06 Aligned_cols=284 Identities=31% Similarity=0.480 Sum_probs=238.2
Q ss_pred CCcccCCCCCCCEEEEecC--cceEEEEecCCcEEEeeCCCCCCCCCccCCCCCCcccccchhhcccccccccccCCccc
Q 011775 88 IPEPFPLPTEASIVKAAAG--WAHCVAVTEGGEVYTWGWKECVPSGRVFGDLSTGTGLDKDVFERQSSFLTEQVSPRSQV 165 (477)
Q Consensus 88 ~p~~v~~~~~~~i~~Ia~G--~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (477)
-|.++.-....+|.-|++| ..|+++|+-+|+.|.||+|..||||-
T Consensus 46 sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGh--------------------------------- 92 (443)
T KOG1427|consen 46 SPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGH--------------------------------- 92 (443)
T ss_pred cceeccccccceEEEEecccchhhEEEEecccceeecccCccCccCc---------------------------------
Confidence 3444444455678888866 78999999999999999999999884
Q ss_pred ccccCCCCCCCCCCCCCcCCCceeeeehhhcccccCCCCCCcccccceEEecCCCCcEEEEEeCCCeEEEEecCCcEEEE
Q 011775 166 SRSSGGTSSGTDGRGSGEEGSKRRRISLAKQTAESSSSGDENLSAFPCLVTLNPGVRIATVAAGGRHTLALSDIGQVWGW 245 (477)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~i~~~~~~~i~~Ia~G~~h~~aLt~~G~vy~w 245 (477)
++......|+.|+.++..+|++.+||++|+++||++|.||+|
T Consensus 93 --------------------------------------gD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~af 134 (443)
T KOG1427|consen 93 --------------------------------------GDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAF 134 (443)
T ss_pred --------------------------------------cchhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEe
Confidence 233355688999999999999999999999999999999999
Q ss_pred eCCCCCcccCCCCCccccCCcccCccccccCCCcccccccCccCCCCCCcccCCCcEEEEeecCCeEEEEecCCCEEEEe
Q 011775 246 GYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSEGPGFRVPGNYVKGIACGGRHSAVITDAGALLTFG 325 (477)
Q Consensus 246 G~n~~gqlG~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~G~~~~~~lt~~g~vy~wG 325 (477)
|.|.+||||+++....+..|.++-. .+..|+.|+||.++++.|+..+.+..+|
T Consensus 135 GeNK~GQlGlgn~~~~v~s~~~~~~---------------------------~~~~v~~v~cga~ftv~l~~~~si~t~g 187 (443)
T KOG1427|consen 135 GENKYGQLGLGNAKNEVESTPLPCV---------------------------VSDEVTNVACGADFTVWLSSTESILTAG 187 (443)
T ss_pred cccccccccccccccccccCCCccc---------------------------cCccceeeccccceEEEeecccceeecC
Confidence 9999999999987655555544432 2356999999999999999999999999
Q ss_pred ecCCCCCCCCCCCC--------------cccceeecccCCCcEEEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCC
Q 011775 326 WGLYGQCGQGSTDD--------------ELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAFGGNQFGQLGTGGDQA 391 (477)
Q Consensus 326 ~n~~gqlG~~~~~~--------------~~~p~~v~~~~~~~i~~i~~G~~hs~alt~~G~vy~wG~n~~gqLG~~~~~~ 391 (477)
.-.|||||.+.... +..|..|..+.+.+|++++||.+|++|++++++||+||.+.||+||+.+.++
T Consensus 188 lp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKD 267 (443)
T KOG1427|consen 188 LPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKD 267 (443)
T ss_pred CccccccccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcceeeecCCccEEEeccccccccccccchh
Confidence 99999999876542 3456777788888999999999999999999999999999999999999988
Q ss_pred cccceeecCCCCCCcceEEEEeCCCeEEEEECCCcEEEEECCCCCCcCCCCCCCccccEEEe-eCCCceEEEEecCCeeE
Q 011775 392 ETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVFCWGWNKYGQLGLGDVIDRNIPSQVT-IEGCVPRNVACGWWHTL 470 (477)
Q Consensus 392 ~~~p~~v~~~~~~~~~i~~i~~G~~hs~al~~~g~vy~wG~n~~gqLG~g~~~~~~~P~~v~-~~~~~v~~v~~G~~hs~ 470 (477)
.-.|+++++...++.--.++.||+..++++.+-|.||.||.+.. ..++-..|.++. +.+-.+..+.||..|.+
T Consensus 268 EmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~------~ge~~mypkP~~dlsgwnl~~~~~~~~h~~ 341 (443)
T KOG1427|consen 268 EMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKN------NGEDWMYPKPMMDLSGWNLRWMDSGSMHHF 341 (443)
T ss_pred hHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeecccc------CcccccCCCchhhcCCccCCCcCccceeee
Confidence 99999999888888888899999999999999999999998862 223444565554 55667888999999888
Q ss_pred EEEcC
Q 011775 471 LLAVP 475 (477)
Q Consensus 471 ~l~~~ 475 (477)
+=.++
T Consensus 342 v~ad~ 346 (443)
T KOG1427|consen 342 VGADS 346 (443)
T ss_pred ecccc
Confidence 76654
No 5
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.95 E-value=3.1e-27 Score=234.73 Aligned_cols=277 Identities=23% Similarity=0.337 Sum_probs=212.8
Q ss_pred EEEEecCCcEEEecCCCCCCCccccCCCCCCCCcccCCCCCC--CEEEEecCcceEEEEecCCcEEEeeCCCCCCCCCcc
Q 011775 57 AMAISDSRKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEA--SIVKAAAGWAHCVAVTEGGEVYTWGWKECVPSGRVF 134 (477)
Q Consensus 57 ~~~lt~~G~v~~wG~n~~~gqlg~~~~~~~~~p~~v~~~~~~--~i~~Ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~ 134 (477)
..+++.-.+||.||.|. .--||.+.+.....|..|.+.... =+.||+.+..|+++|++.|.||.+|...-|.||.
T Consensus 135 ~~~~d~pndvy~wG~N~-N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~-- 211 (1267)
T KOG0783|consen 135 HPVLDLPNDVYGWGTNV-NNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGF-- 211 (1267)
T ss_pred ccccCCccceeEecccc-cccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCc--
Confidence 45678889999999997 688999999999999999876643 3788999999999999999999999666544442
Q ss_pred CCCCCCcccccchhhcccccccccccCCcccccccCCCCCCCCCCCCCcCCCceeeeehhhcccccCCCCCCcccccceE
Q 011775 135 GDLSTGTGLDKDVFERQSSFLTEQVSPRSQVSRSSGGTSSGTDGRGSGEEGSKRRRISLAKQTAESSSSGDENLSAFPCL 214 (477)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 214 (477)
++.+....|++
T Consensus 212 ---------------------------------------------------------------------gdeq~~~iPkr 222 (1267)
T KOG0783|consen 212 ---------------------------------------------------------------------GDEQYNFIPKR 222 (1267)
T ss_pred ---------------------------------------------------------------------Ccccccccccc
Confidence 34557789999
Q ss_pred EecCCCCcEEEEEeCCCeEEEEecCCcEEEEeCCCCCcccCCCCCccccCCcccCccccccCCCcccccccCccCCCCCC
Q 011775 215 VTLNPGVRIATVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSEGPG 294 (477)
Q Consensus 215 i~~~~~~~i~~Ia~G~~h~~aLt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (477)
|+.+.+.+|.+|++...|+++||++|-||+||.|.++|||..+.......|..|.....
T Consensus 223 V~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~--------------------- 281 (1267)
T KOG0783|consen 223 VPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRI--------------------- 281 (1267)
T ss_pred cccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhh---------------------
Confidence 99998999999999999999999999999999999999999877655566665543322
Q ss_pred cccCC-CcEEEEeecCCeEEEEecCCCEEEEeecCCCCCCCCCCCC-cccceeecccCCCcEEEEEecCCeEEEEEcCCc
Q 011775 295 FRVPG-NYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDD-ELSPNCVSSLLGIQIEGVAAGLWHTICISSDGD 372 (477)
Q Consensus 295 ~~~~~-~~i~~I~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~-~~~p~~v~~~~~~~i~~i~~G~~hs~alt~~G~ 372 (477)
.+ ..|+.+++|..|+++.|.. .||+||.| .||||..+... ...|..+.. ....|..|+|....+++++.++.
T Consensus 282 ---kg~~~iIgvaAg~~hsVawt~~-~VY~wGlN-~GQlGi~~n~~~Vt~Pr~l~~-~~~~v~~v~a~~~ATVc~~~~~~ 355 (1267)
T KOG0783|consen 282 ---KGFKQIIGVAAGKSHSVAWTDT-DVYSWGLN-NGQLGISDNISVVTTPRRLAG-LLSPVIHVVATTRATVCLLQNNS 355 (1267)
T ss_pred ---cchhhhhhhhcccceeeeeecc-eEEEeccc-CceecCCCCCceeecchhhcc-cccceEEEEecCccEEEEecCCc
Confidence 22 2589999999999999876 69999998 59999877654 456755533 34589999999999999999999
Q ss_pred EEEEeCCCCCCcCCCCCCCcccceeecCC--CCCCcceEEEEeCCCeEEEEECCCcEEEEECCC
Q 011775 373 VYAFGGNQFGQLGTGGDQAETLPRLLDAP--SLENVHSKSVSCGARHTAVIADDGKVFCWGWNK 434 (477)
Q Consensus 373 vy~wG~n~~gqLG~~~~~~~~~p~~v~~~--~~~~~~i~~i~~G~~hs~al~~~g~vy~wG~n~ 434 (477)
+|++-+.. |.-.........-..+..- .+.-..+.+..+....-+++|+-|+||+|-++.
T Consensus 356 i~~~ady~--~~k~~~n~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~n 417 (1267)
T KOG0783|consen 356 IIAFADYN--QVKLPFNVDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKN 417 (1267)
T ss_pred EEEEeccc--ceecCcchhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCC
Confidence 99988644 3222221111111111111 111234667777778889999999999998654
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.94 E-value=1.7e-26 Score=229.49 Aligned_cols=302 Identities=19% Similarity=0.275 Sum_probs=220.4
Q ss_pred EEEEEeecC-CCCCCCCCc--cccceEecCCCCCCcccccccccccceEEEEecCCcEEEecCCCCCCCccccCCCCCCC
Q 011775 12 RVVFMWGYL-PGALPQRSP--ILSPLVVRLPLTVGSAWRDVCGGGCGFAMAISDSRKLITWGSTDDLGQSYVTSGKHGEI 88 (477)
Q Consensus 12 ~~v~~WG~~-~g~lg~~~~--~~~p~~~~~~~~~~~~i~~v~~g~~~~~~~lt~~G~v~~wG~n~~~gqlg~~~~~~~~~ 88 (477)
.-||.||.| +-.||.+.. ...|..|.+....+.-+.+|+.+.+ |+++|++.|+||++|-+. .|+||.+......+
T Consensus 142 ndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kf-HSvfl~~kgqvY~cGhG~-GGRlG~gdeq~~~i 219 (1267)
T KOG0783|consen 142 NDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKF-HSVFLTEKGQVYVCGHGA-GGRLGFGDEQYNFI 219 (1267)
T ss_pred cceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhc-eeeEecCCCcEEEeccCC-CCccCcCccccccc
Confidence 569999999 888888864 4566666655555677889999888 999999999999999996 89999998888889
Q ss_pred CcccCCCCCCCEEEEecCcceEEEEecCCcEEEeeCCCCCCCCCccCCCCCCcccccchhhcccccccccccCCcccccc
Q 011775 89 PEPFPLPTEASIVKAAAGWAHCVAVTEGGEVYTWGWKECVPSGRVFGDLSTGTGLDKDVFERQSSFLTEQVSPRSQVSRS 168 (477)
Q Consensus 89 p~~v~~~~~~~i~~Ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (477)
|++|+.....+|.+|++...|+++||++|-||+||.|.+.|||-....
T Consensus 220 PkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~-------------------------------- 267 (1267)
T KOG0783|consen 220 PKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDE-------------------------------- 267 (1267)
T ss_pred ccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCch--------------------------------
Confidence 999998888999999999999999999999999999999999853111
Q ss_pred cCCCCCCCCCCCCCcCCCceeeeehhhcccccCCCCCCcccccceEEecCCCCcEEEEEeCCCeEEEEecCCcEEEEeCC
Q 011775 169 SGGTSSGTDGRGSGEEGSKRRRISLAKQTAESSSSGDENLSAFPCLVTLNPGVRIATVAAGGRHTLALSDIGQVWGWGYG 248 (477)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~i~~~~~~~i~~Ia~G~~h~~aLt~~G~vy~wG~n 248 (477)
. ..+...+..|..+.... .|+.|++|..|++|.|+ -.||+||.|
T Consensus 268 -----------------~----------------~~~~p~qI~a~r~kg~~--~iIgvaAg~~hsVawt~-~~VY~wGlN 311 (1267)
T KOG0783|consen 268 -----------------L----------------KKDDPIQITARRIKGFK--QIIGVAAGKSHSVAWTD-TDVYSWGLN 311 (1267)
T ss_pred -----------------h----------------hcCchhhhhhHhhcchh--hhhhhhcccceeeeeec-ceEEEeccc
Confidence 0 00111222333333322 79999999999999996 589999997
Q ss_pred CCCcccCCCCCccccCCcccCccccccCCCcccccccCccCCCCCCcccCCCcEEEEeecCCeEEEEecCCCEEEEeecC
Q 011775 249 GEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSEGPGFRVPGNYVKGIACGGRHSAVITDAGALLTFGWGL 328 (477)
Q Consensus 249 ~~gqlG~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~G~~~~~~lt~~g~vy~wG~n~ 328 (477)
.||||+.+....+..|..+.... ..|..++|...-++++++++.+|++-+-.
T Consensus 312 -~GQlGi~~n~~~Vt~Pr~l~~~~---------------------------~~v~~v~a~~~ATVc~~~~~~i~~~ady~ 363 (1267)
T KOG0783|consen 312 -NGQLGISDNISVVTTPRRLAGLL---------------------------SPVIHVVATTRATVCLLQNNSIIAFADYN 363 (1267)
T ss_pred -CceecCCCCCceeecchhhcccc---------------------------cceEEEEecCccEEEEecCCcEEEEeccc
Confidence 58999988877777886553222 34899999999999999999999986432
Q ss_pred CCCCCCCCCCCcccceeecc----cCCCcEEEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeecCCCCC
Q 011775 329 YGQCGQGSTDDELSPNCVSS----LLGIQIEGVAAGLWHTICISSDGDVYAFGGNQFGQLGTGGDQAETLPRLLDAPSLE 404 (477)
Q Consensus 329 ~gqlG~~~~~~~~~p~~v~~----~~~~~i~~i~~G~~hs~alt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~ 404 (477)
.-.+ .......+-.+|.. +.-.++++..+...--+++|+-|+||.|-.+..-.- .-...|..+
T Consensus 364 ~~k~--~~n~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~~~-----~c~ftp~r~------ 430 (1267)
T KOG0783|consen 364 QVKL--PFNVDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNSTRT-----SCKFTPLRI------ 430 (1267)
T ss_pred ceec--CcchhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCcee-----eeeccccee------
Confidence 2211 11111111112211 011256677777788899999999999996642110 001122222
Q ss_pred CcceEEEEeCCCeEEEEECCC
Q 011775 405 NVHSKSVSCGARHTAVIADDG 425 (477)
Q Consensus 405 ~~~i~~i~~G~~hs~al~~~g 425 (477)
..|.+|+--.+..+++|.||
T Consensus 431 -~~isdIa~~~N~~~~~t~dG 450 (1267)
T KOG0783|consen 431 -FEISDIAWTANSLILCTRDG 450 (1267)
T ss_pred -eehhhhhhccceEEEEecCc
Confidence 23667888889999999999
No 7
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.94 E-value=6.9e-25 Score=225.78 Aligned_cols=355 Identities=20% Similarity=0.235 Sum_probs=232.0
Q ss_pred cceEEEEEeecCCCCCCCCCccccceEecCCCCCCcccccccccccc-eEEEEecCCcEEEecCCCCCCCccccCCCCCC
Q 011775 9 KMERVVFMWGYLPGALPQRSPILSPLVVRLPLTVGSAWRDVCGGGCG-FAMAISDSRKLITWGSTDDLGQSYVTSGKHGE 87 (477)
Q Consensus 9 ~~~~~v~~WG~~~g~lg~~~~~~~p~~~~~~~~~~~~i~~v~~g~~~-~~~~lt~~G~v~~wG~n~~~gqlg~~~~~~~~ 87 (477)
.++|+||+=|... .+|....-..=....+| ..|++++.|-.. |......+|.++.-|+....|.+
T Consensus 495 a~sGKvYYaGn~t-~~Gl~e~G~nWmEL~l~----~~IVq~SVG~D~~~~~~~A~~G~I~~v~D~k~~~~~--------- 560 (3738)
T KOG1428|consen 495 ARSGKVYYAGNGT-RFGLFETGNNWMELCLP----EPIVQISVGIDTIMFRSGAGHGWIASVDDKKRNGRL--------- 560 (3738)
T ss_pred hcCccEEEecCcc-EEeEEccCCceEEecCC----CceEEEEeccchhheeeccCcceEEeccCcccccch---------
Confidence 3899999999851 23333222333455555 678898887432 33344668888887765433332
Q ss_pred CCcccCCCCCCCEEEEecCcceEEEEecCCcEEEeeCCCCCCCCCccCCCCCCcccccchhhcccccccccccCCccccc
Q 011775 88 IPEPFPLPTEASIVKAAAGWAHCVAVTEGGEVYTWGWKECVPSGRVFGDLSTGTGLDKDVFERQSSFLTEQVSPRSQVSR 167 (477)
Q Consensus 88 ~p~~v~~~~~~~i~~Ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (477)
.+.++. +..+|+.+.+...-.-.+.+||++|..|...--
T Consensus 561 -Rr~~P~-n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm~--------------------------------------- 599 (3738)
T KOG1428|consen 561 -RRLVPS-NRRKIVHVCASGHVYGYVSENGKIFMGGLHTMR--------------------------------------- 599 (3738)
T ss_pred -hhcCCC-CcceeEEEeeeeEEEEEEccCCeEEeecceeEE---------------------------------------
Confidence 112222 234787775544445578999999999943210
Q ss_pred ccCCCCCCCCCCCCCcCCCceeeeehhhcccccCCCCCCcccccceEEecCCCCcEEEEEeCCCeEEEEecCCcEEEEeC
Q 011775 168 SSGGTSSGTDGRGSGEEGSKRRRISLAKQTAESSSSGDENLSAFPCLVTLNPGVRIATVAAGGRHTLALSDIGQVWGWGY 247 (477)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~i~~~~~~~i~~Ia~G~~h~~aLt~~G~vy~wG~ 247 (477)
....-+.+..+.+.-|.+++.|..|.++++++|+||.||.
T Consensus 600 ----------------------------------------~n~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~Gl 639 (3738)
T KOG1428|consen 600 ----------------------------------------VNVSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGL 639 (3738)
T ss_pred ----------------------------------------ecchHHHhhccccceeehhhccccceeEEEeCCeEEEEec
Confidence 0001112334445579999999999999999999999999
Q ss_pred CCCCcccCCCCCccccCCcccCccccccCCCcccccccCccCCCCCCcccCCCcEEEEeecCCeEEEEe------cCCCE
Q 011775 248 GGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSEGPGFRVPGNYVKGIACGGRHSAVIT------DAGAL 321 (477)
Q Consensus 248 n~~gqlG~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~G~~~~~~lt------~~g~v 321 (477)
|+.+|+|+-........|..-.-.+. .+.+.....++.+..-+...||......+. -.|.+
T Consensus 640 NN~~QCGRVEs~sTt~s~~~s~~~e~-------------~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~m 706 (3738)
T KOG1428|consen 640 NNMNQCGRVESTSTTSSPRHSGRQEY-------------QICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTM 706 (3738)
T ss_pred CCcccccccccccccCCcccccceee-------------cccCCccceeecCCcchhhhcccccccccccccCCCCCCcc
Confidence 99999998655443333332211111 223333444555555555555544332221 24555
Q ss_pred EEEeecCCCCCCCC--------CCC-------------------Ccccceeecc---cCCCcEEEEEecCCeEEEEEcCC
Q 011775 322 LTFGWGLYGQCGQG--------STD-------------------DELSPNCVSS---LLGIQIEGVAAGLWHTICISSDG 371 (477)
Q Consensus 322 y~wG~n~~gqlG~~--------~~~-------------------~~~~p~~v~~---~~~~~i~~i~~G~~hs~alt~~G 371 (477)
..+|.++.+.+--+ ... ....|.+|.. +-+.++.+|+||..|+++|.+++
T Consensus 707 C~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~ 786 (3738)
T KOG1428|consen 707 CHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDR 786 (3738)
T ss_pred cccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccCceEEEEecCC
Confidence 55665554443211 100 0123444332 22458999999999999999999
Q ss_pred cEEEEeCCCCCCcCCCCCCCcccceeecCCCCCCcceEEEEeCCCeEEEEECCCcEEEEECCCCCCcCCCCCC---Cccc
Q 011775 372 DVYAFGGNQFGQLGTGGDQAETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVFCWGWNKYGQLGLGDVI---DRNI 448 (477)
Q Consensus 372 ~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~al~~~g~vy~wG~n~~gqLG~g~~~---~~~~ 448 (477)
+||.+|.|.+||||.|+......|+.+..| .+..|++|++|++|++++..||.||++|.-..|||+..-.+ ....
T Consensus 787 ~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~--~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~e~~~WNA~ 864 (3738)
T KOG1428|consen 787 RVFTFGSNCHGQLGVGDTLSKNTPQQVILP--SDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPAGEKAGWNAI 864 (3738)
T ss_pred cEEEecCCcccccCcCccccCCCcceEEcC--CCCceEEEecCCCceEEEecCCcEEEeccccCccccCccccccccccC
Confidence 999999999999999999999999999864 56679999999999999999999999999999999986443 3346
Q ss_pred cEEEeeC----CCceEEEEecCCeeEEEE
Q 011775 449 PSQVTIE----GCVPRNVACGWWHTLLLA 473 (477)
Q Consensus 449 P~~v~~~----~~~v~~v~~G~~hs~~l~ 473 (477)
|.++.-. +.+..-|.+.++.+++-.
T Consensus 865 Pe~v~~~G~~f~~~A~WIGAdGDss~i~~ 893 (3738)
T KOG1428|consen 865 PEKVSGFGPGFNAFAGWIGADGDSSIIHS 893 (3738)
T ss_pred CCcCCCCCccccccceeeccCCCcceeeh
Confidence 7777622 445667777777776643
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.85 E-value=2.8e-20 Score=192.39 Aligned_cols=209 Identities=25% Similarity=0.365 Sum_probs=151.8
Q ss_pred cEEEEEeCCCeEEEEec--CCcEEEEeCCCCCcccCCCCCccccCCcccCccccccCCCcccccccCccCCCCCCcccCC
Q 011775 222 RIATVAAGGRHTLALSD--IGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSEGPGFRVPG 299 (477)
Q Consensus 222 ~i~~Ia~G~~h~~aLt~--~G~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (477)
+|++|+.|-+.+.++.- +|-|+.-++... .-+..+.++. ..
T Consensus 526 ~IVq~SVG~D~~~~~~~A~~G~I~~v~D~k~----------~~~~Rr~~P~---------------------------n~ 568 (3738)
T KOG1428|consen 526 PIVQISVGIDTIMFRSGAGHGWIASVDDKKR----------NGRLRRLVPS---------------------------NR 568 (3738)
T ss_pred ceEEEEeccchhheeeccCcceEEeccCccc----------ccchhhcCCC---------------------------Cc
Confidence 89999999998888764 455555543211 1111111111 11
Q ss_pred CcEEEEeecCCeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecCCeEEEEEcCCcEEEEeCC
Q 011775 300 NYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAFGGN 379 (477)
Q Consensus 300 ~~i~~I~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~alt~~G~vy~wG~n 379 (477)
.+|+.+.+...-.-.+.++|++|..|.... ........+..+.+.-|.+++.|..|.++++.+|+||.||.|
T Consensus 569 rKIv~v~~s~~VY~~vSenGkifM~G~~tm--------~~n~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlN 640 (3738)
T KOG1428|consen 569 RKIVHVCASGHVYGYVSENGKIFMGGLHTM--------RVNVSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLN 640 (3738)
T ss_pred ceeEEEeeeeEEEEEEccCCeEEeecceeE--------EecchHHHhhccccceeehhhccccceeEEEeCCeEEEEecC
Confidence 467777665555567789999999874321 001123345667777899999999999999999999999999
Q ss_pred CCCCcCCCCCCCcc-cc---------------------------------------------------------------
Q 011775 380 QFGQLGTGGDQAET-LP--------------------------------------------------------------- 395 (477)
Q Consensus 380 ~~gqLG~~~~~~~~-~p--------------------------------------------------------------- 395 (477)
..+|+|.-+..... .|
T Consensus 641 N~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG 720 (3738)
T KOG1428|consen 641 NMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCG 720 (3738)
T ss_pred CcccccccccccccCCcccccceeecccCCccceeecCCcchhhhcccccccccccccCCCCCCcccccCCCcccceecc
Confidence 99999865432100 00
Q ss_pred -----------------------------------eeecC-CCCCCcceEEEEeCCCeEEEEECCCcEEEEECCCCCCcC
Q 011775 396 -----------------------------------RLLDA-PSLENVHSKSVSCGARHTAVIADDGKVFCWGWNKYGQLG 439 (477)
Q Consensus 396 -----------------------------------~~v~~-~~~~~~~i~~i~~G~~hs~al~~~g~vy~wG~n~~gqLG 439 (477)
..+.. ...-+.++.+|+||..|+++|.+|++||++|.|.+||||
T Consensus 721 ~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG 800 (3738)
T KOG1428|consen 721 LCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLG 800 (3738)
T ss_pred ccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccCceEEEEecCCcEEEecCCcccccC
Confidence 00000 011256899999999999999999999999999999999
Q ss_pred CCCCCCccccEEEeeC-CCceEEEEecCCeeEEEEcC
Q 011775 440 LGDVIDRNIPSQVTIE-GCVPRNVACGWWHTLLLAVP 475 (477)
Q Consensus 440 ~g~~~~~~~P~~v~~~-~~~v~~v~~G~~hs~~l~~~ 475 (477)
.|+.....+|++|.++ +..+++|++|++|+++..++
T Consensus 801 ~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~D 837 (3738)
T KOG1428|consen 801 VGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRAND 837 (3738)
T ss_pred cCccccCCCcceEEcCCCCceEEEecCCCceEEEecC
Confidence 9999999999999977 55899999999999999876
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.30 E-value=3.2e-12 Score=87.90 Aligned_cols=49 Identities=49% Similarity=0.834 Sum_probs=44.8
Q ss_pred CCcEEEEECCCCCCcC-CCCCCCccccEEEeeC-CCceEEEEecCCeeEEE
Q 011775 424 DGKVFCWGWNKYGQLG-LGDVIDRNIPSQVTIE-GCVPRNVACGWWHTLLL 472 (477)
Q Consensus 424 ~g~vy~wG~n~~gqLG-~g~~~~~~~P~~v~~~-~~~v~~v~~G~~hs~~l 472 (477)
||+||+||.|.+|||| .+.......|++|+.+ +.+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 7788888999999955 66899999999999997
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.27 E-value=7.2e-12 Score=86.10 Aligned_cols=50 Identities=34% Similarity=0.531 Sum_probs=47.0
Q ss_pred CCCEEEEeecCCCCCC-CCCCCCcccceeecccCCCcEEEEEecCCeEEEE
Q 011775 318 AGALLTFGWGLYGQCG-QGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICI 367 (477)
Q Consensus 318 ~g~vy~wG~n~~gqlG-~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~al 367 (477)
||+||+||.|.+|||| .........|++++.+.+.+|++|+||.+|++||
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6899999999999999 7777888999999999989999999999999987
No 11
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.20 E-value=2.8e-11 Score=72.19 Aligned_cols=30 Identities=43% Similarity=0.793 Sum_probs=26.1
Q ss_pred EEEEEeCCCeEEEEecCCcEEEEeCCCCCc
Q 011775 223 IATVAAGGRHTLALSDIGQVWGWGYGGEGQ 252 (477)
Q Consensus 223 i~~Ia~G~~h~~aLt~~G~vy~wG~n~~gq 252 (477)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999997
No 12
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.16 E-value=6.7e-11 Score=70.56 Aligned_cols=30 Identities=43% Similarity=0.908 Sum_probs=26.0
Q ss_pred EEEEEecCCeEEEEEcCCcEEEEeCCCCCC
Q 011775 354 IEGVAAGLWHTICISSDGDVYAFGGNQFGQ 383 (477)
Q Consensus 354 i~~i~~G~~hs~alt~~G~vy~wG~n~~gq 383 (477)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999997
No 13
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.7e-12 Score=131.97 Aligned_cols=185 Identities=28% Similarity=0.426 Sum_probs=136.0
Q ss_pred cceEEecCCCCcEEEEEeCCCeEEEEecCCcEEEEeCCCCCcccCCCCCccccCCcccCccccccCCCcccccccCccCC
Q 011775 211 FPCLVTLNPGVRIATVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNS 290 (477)
Q Consensus 211 ~P~~i~~~~~~~i~~Ia~G~~h~~aLt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~ 290 (477)
.|+.+..+...+|.+++||.+|+++++..|++|.||.|.+||+|.+....... |.+++.
T Consensus 4 ~~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~-p~~~~s-------------------- 62 (850)
T KOG0941|consen 4 APRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAK-PEPVES-------------------- 62 (850)
T ss_pred hhHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCC-Cccchh--------------------
Confidence 34444444455899999999999999999999999999999999984433333 666643
Q ss_pred CCCCcccCCCcEEEEeecCCeEEEEec-------CCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecCCe
Q 011775 291 EGPGFRVPGNYVKGIACGGRHSAVITD-------AGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWH 363 (477)
Q Consensus 291 ~~~~~~~~~~~i~~I~~G~~~~~~lt~-------~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~h 363 (477)
+.+....+|+||.+|++++.. +|.++.+|....+|+|.........|..+..+.+..+..|+||..|
T Consensus 63 ------l~g~p~a~v~~g~~hs~~lS~~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e~i~~~~t~ia~~~~h 136 (850)
T KOG0941|consen 63 ------LKGVPLAQVSAGEAHSFALSSHTVLLTDEGKVFSFGAGSTGQLGHSLTENEVLPLLVLELIGSRVTRIACVRGH 136 (850)
T ss_pred ------hcCCcHHHHhcCCCcchhhhhchhhcchhccccccCCcccccccccccccccccHHHHHHHhhhhHHHHHHHHH
Confidence 334667888888888777765 9999999999999999977777888888888888899999999999
Q ss_pred EEEEE-cCCcEEEEeCCCCCCcCCCCCCCcccceeecCCC-CCCcceEEEEeCCCeEEEEECCC
Q 011775 364 TICIS-SDGDVYAFGGNQFGQLGTGGDQAETLPRLLDAPS-LENVHSKSVSCGARHTAVIADDG 425 (477)
Q Consensus 364 s~alt-~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~-~~~~~i~~i~~G~~hs~al~~~g 425 (477)
+.+.- .-|++|..|.+..| .+.......+.+..... .....+..+.+|...++.+...+
T Consensus 137 t~a~v~~l~qsf~~~~~~sG---k~~i~s~s~~~~l~~~d~~~~~~~~~~~~g~dq~~~l~~~~ 197 (850)
T KOG0941|consen 137 TLAIVPRLGQSFSFGKGASG---KGVIVSLSGEDLLRDHDSEKDHRCSLAFAGGDQTFSLSSKG 197 (850)
T ss_pred HHhhhhhhcceeecccCCCC---CceeeccchhhhcccccHHHHHHHHHHhcCCCceEEEEeec
Confidence 98864 46899999998877 11111111111111111 11234556788888888877654
No 14
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=7.3e-12 Score=127.36 Aligned_cols=170 Identities=27% Similarity=0.402 Sum_probs=131.8
Q ss_pred CcEEEEeecCCeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecCCeEEEEEc-------CCc
Q 011775 300 NYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICISS-------DGD 372 (477)
Q Consensus 300 ~~i~~I~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~alt~-------~G~ 372 (477)
.++.+++||..|+++++..|+++.||.|.+||+|.+.......|..++.+.+.+..+|++|.+|++++.. +|.
T Consensus 14 k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~~~~~lt~e~~ 93 (850)
T KOG0941|consen 14 KHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSSHTVLLTDEGK 93 (850)
T ss_pred hhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhhchhhcchhcc
Confidence 5699999999999999999999999999999999985444445999999999999999999999888766 999
Q ss_pred EEEEeCCCCCCcCCCCCCCcccceeecCCCCCCcceEEEEeCCCeEEEEE-CCCcEEEEECCCCCCcCCCCCCCccccEE
Q 011775 373 VYAFGGNQFGQLGTGGDQAETLPRLLDAPSLENVHSKSVSCGARHTAVIA-DDGKVFCWGWNKYGQLGLGDVIDRNIPSQ 451 (477)
Q Consensus 373 vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~al~-~~g~vy~wG~n~~gqLG~g~~~~~~~P~~ 451 (477)
++.+|....+|+|+........|..+. .+.+..+.+|+||..|+.++. .-|++|..|.+..| .+.-.....+.+
T Consensus 94 ~fs~Ga~~~~q~~h~~~~~~~~~~~v~--e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sG---k~~i~s~s~~~~ 168 (850)
T KOG0941|consen 94 VFSFGAGSTGQLGHSLTENEVLPLLVL--ELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASG---KGVIVSLSGEDL 168 (850)
T ss_pred ccccCCcccccccccccccccccHHHH--HHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCC---Cceeeccchhhh
Confidence 999999999999996665566776665 456678999999999999865 45899999999887 111111111111
Q ss_pred EeeC----CCceEEEEecCCeeEEEEc
Q 011775 452 VTIE----GCVPRNVACGWWHTLLLAV 474 (477)
Q Consensus 452 v~~~----~~~v~~v~~G~~hs~~l~~ 474 (477)
.... ...+..+++|.+.++.+.-
T Consensus 169 l~~~d~~~~~~~~~~~~g~dq~~~l~~ 195 (850)
T KOG0941|consen 169 LRDHDSEKDHRCSLAFAGGDQTFSLSS 195 (850)
T ss_pred cccccHHHHHHHHHHhcCCCceEEEEe
Confidence 1111 2235567778887777653
No 15
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=95.51 E-value=0.17 Score=57.31 Aligned_cols=235 Identities=15% Similarity=0.187 Sum_probs=123.2
Q ss_pred EEEEEeCCCeEEEEecCCcEEEEeCCCCCcccCCCCCccc--cCCcccCccccccCCCcccccccCccCCCCCCccc---
Q 011775 223 IATVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMV--SSPHPIPCIESSYGKDRSAALSRGSVNSEGPGFRV--- 297 (477)
Q Consensus 223 i~~Ia~G~~h~~aLt~~G~vy~wG~n~~gqlG~~~~~~~~--~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 297 (477)
.++=..|..|+++|.++|.=|.=|+|-.-.|=+....-.. ..|.+-..+ ..+..-...+..|.+..+...+.-
T Consensus 560 likd~~GQ~Hs~aLde~~~~~~pGWNLSd~Lvl~N~~GL~~~~~p~~~~~l--dl~r~G~v~L~~G~i~~wD~ttq~W~~ 637 (1774)
T PF11725_consen 560 LIKDRQGQRHSHALDEQGSQLQPGWNLSDALVLDNTRGLPKPPAPAPHEIL--DLGRAGLVGLQDGKIQYWDSTTQCWKD 637 (1774)
T ss_pred EEeccCCceeeccccccCCccCCCCcccceeEeeccCCCCCCCCCChHHhh--ccccccceeeccceEeeecCcchhhhh
Confidence 4445678899999999999998888865444333221111 122222211 122222333333332222111110
Q ss_pred CCC-cEEEEeecCCeEEEEecCCCEEEEeecC-CCCCCCCCCCC------cccc---eeecccCCCcEEEEEe-cCCeEE
Q 011775 298 PGN-YVKGIACGGRHSAVITDAGALLTFGWGL-YGQCGQGSTDD------ELSP---NCVSSLLGIQIEGVAA-GLWHTI 365 (477)
Q Consensus 298 ~~~-~i~~I~~G~~~~~~lt~~g~vy~wG~n~-~gqlG~~~~~~------~~~p---~~v~~~~~~~i~~i~~-G~~hs~ 365 (477)
.+. .|.++.-|.+.-..+.++|+|-----+. +.-+-.+.... ...| ..+..+.+..|+.++. +.++++
T Consensus 638 ~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~~~~a~~~~r~~~e~G~~l~Gl~~~~i~a~Avv~~~~fv 717 (1774)
T PF11725_consen 638 AGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGDNNVFALPQRRNKVELGDALEGLEDRVITAFAVVNDNKFV 717 (1774)
T ss_pred ccCcCHHHHhccccCCceEecCCceeeeecccCCCccccCCCcccccccccCCCCCCccccCCCcCcceeEEEEcCCceE
Confidence 011 2344444555555555555554322111 11111111111 0111 1234455556666554 678899
Q ss_pred EEEcCCcEEEEeCCCCCCcCCCCCCCcccceeecCCCCCCcceEEEEeCCCeE-EEEECCCcEEEEECCCCCCcCCCC-C
Q 011775 366 CISSDGDVYAFGGNQFGQLGTGGDQAETLPRLLDAPSLENVHSKSVSCGARHT-AVIADDGKVFCWGWNKYGQLGLGD-V 443 (477)
Q Consensus 366 alt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs-~al~~~g~vy~wG~n~~gqLG~g~-~ 443 (477)
+|+++|++-+.= ....|+.++.+.+.+ .|.+|++-..|. +|++.+|+||.-=.-..-+.-.++ .
T Consensus 718 ald~qg~lt~h~-------------k~g~p~~l~~~gl~G-~ik~l~lD~~~nL~Alt~~G~Lf~~~k~~WQ~~~~~~~~ 783 (1774)
T PF11725_consen 718 ALDDQGDLTAHQ-------------KPGRPVPLSRPGLSG-EIKDLALDEKQNLYALTSTGELFRLPKEAWQGNAEGDQM 783 (1774)
T ss_pred EeccCCcccccc-------------CCCCCccCCCCCCCc-chhheeeccccceeEecCCCceeecCHHHhhCcccCCcc
Confidence 999999876422 122377777666654 699999998876 579999999975443322222221 2
Q ss_pred CCccccEEEeeCCCceEEEEecCCeeEEEEc
Q 011775 444 IDRNIPSQVTIEGCVPRNVACGWWHTLLLAV 474 (477)
Q Consensus 444 ~~~~~P~~v~~~~~~v~~v~~G~~hs~~l~~ 474 (477)
...+.|..++ .+.+|..+....+|.+.+.-
T Consensus 784 ~~~W~~v~lP-~~~~v~~l~~~~~~~l~~~~ 813 (1774)
T PF11725_consen 784 AAKWQKVALP-DEQPVKSLRTNDDNHLSAQI 813 (1774)
T ss_pred ccCceeccCC-CCCchhhhhcCCCCceEEEe
Confidence 3455665555 35578888888888877653
No 16
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=92.31 E-value=1.9 Score=43.71 Aligned_cols=69 Identities=19% Similarity=0.263 Sum_probs=50.1
Q ss_pred cEEEEeecC-CeEEEEecCCCEEE-EeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecCCeEEEEEcCCcEEE
Q 011775 301 YVKGIACGG-RHSAVITDAGALLT-FGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYA 375 (477)
Q Consensus 301 ~i~~I~~G~-~~~~~lt~~g~vy~-wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~alt~~G~vy~ 375 (477)
.+.+|++|. .-..+++++|+||. .|-....+.|..=. +...|... + .++.|+.|..-.-+||++|.+|.
T Consensus 228 ~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~GdsWk-dI~tP~~a--~---~~v~iSvGt~t~Waldndg~lwf 298 (705)
T KOG3669|consen 228 DLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGDSWK-DIVTPRQA--L---EPVCISVGTQTLWALDNDGNLWF 298 (705)
T ss_pred ccceEeecCcceEEEEeeCCcEEEEecccccCCCCchhh-hccCcccc--c---ceEEEEeccceEEEEecCCcEEE
Confidence 389999998 78889999999763 46555555544221 23333322 2 38999999999999999999985
No 17
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=90.47 E-value=5 Score=40.87 Aligned_cols=121 Identities=17% Similarity=0.180 Sum_probs=74.3
Q ss_pred ecCCeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecC-CeEEEEEcCCcEE-EEeCCCCCCc
Q 011775 307 CGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGL-WHTICISSDGDVY-AFGGNQFGQL 384 (477)
Q Consensus 307 ~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~-~hs~alt~~G~vy-~wG~n~~gqL 384 (477)
.|.....+|..+|++|. +-|.....+.-.--++... ..++.+|++|. .-..||+.+|.|| =-|-....+.
T Consensus 190 ~g~~~awAI~s~Gd~y~-------RtGvs~~~P~GraW~~i~~-~t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~ 261 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYL-------RTGVSVDRPCGRAWKVICP-YTDLSQISAGPTGVVWAVTENGAVFYREGVSRQNPE 261 (705)
T ss_pred CCceEEEEEecCCcEEE-------eccccCCCCCCceeeecCC-CCccceEeecCcceEEEEeeCCcEEEEecccccCCC
Confidence 67778889999999995 2232222221111111111 11688999999 7788999999976 4565555555
Q ss_pred CCCCCCCcccceeecCCCCCCcceEEEEeCCCeEEEEECCCcEEEE-ECCCCCCcCCCCC
Q 011775 385 GTGGDQAETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVFCW-GWNKYGQLGLGDV 443 (477)
Q Consensus 385 G~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~al~~~g~vy~w-G~n~~gqLG~g~~ 443 (477)
|..-. +...|+.. ..++.|+.|...--||+.+|.+|.= |--..--+|....
T Consensus 262 GdsWk-dI~tP~~a-------~~~v~iSvGt~t~Waldndg~lwfrrgii~~kpeg~h~~ 313 (705)
T KOG3669|consen 262 GDSWK-DIVTPRQA-------LEPVCISVGTQTLWALDNDGNLWFRRGIISKKPEGDHDH 313 (705)
T ss_pred Cchhh-hccCcccc-------cceEEEEeccceEEEEecCCcEEEEecccccCccccccc
Confidence 54322 22333322 2389999999999999999999865 3333233444433
No 18
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=90.31 E-value=0.051 Score=58.81 Aligned_cols=83 Identities=16% Similarity=0.243 Sum_probs=55.7
Q ss_pred CCCCcEEEEEeCCCeEEEEecCCcEEEEeCCCCCcccCCCCCccccCC-cccCccccccCCCcccccccCccCCCCCCcc
Q 011775 218 NPGVRIATVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSP-HPIPCIESSYGKDRSAALSRGSVNSEGPGFR 296 (477)
Q Consensus 218 ~~~~~i~~Ia~G~~h~~aLt~~G~vy~wG~n~~gqlG~~~~~~~~~~p-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (477)
+.+.+|+.+++..-...++|++|+|.+|=+ .+|.+...+..... +.+ .
T Consensus 426 ~hge~ii~lSanniR~si~T~nghlasWlD----EcgagV~fkLa~ea~Tki---------------------------e 474 (3015)
T KOG0943|consen 426 LHGEKIILLSANNIRASIATENGHLASWLD----ECGAGVAFKLAHEAQTKI---------------------------E 474 (3015)
T ss_pred ccCCeeEEeecCceeeeeeecCCchhhHHh----hhhhhhhhhhhhhhhhhh---------------------------h
Confidence 446799999999999999999999999943 22222211111111 111 1
Q ss_pred cCCCcEEEEeecCCeEEEEecCCCEEEEeecCCCC
Q 011775 297 VPGNYVKGIACGGRHSAVITDAGALLTFGWGLYGQ 331 (477)
Q Consensus 297 ~~~~~i~~I~~G~~~~~~lt~~g~vy~wG~n~~gq 331 (477)
..+..+++.-|...|.++..++..+|=||.-.+.|
T Consensus 475 ed~~maVqd~~~adhlaAf~~dniihWcGiVPf~e 509 (3015)
T KOG0943|consen 475 EDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPFSE 509 (3015)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhceeeEEeeeeehh
Confidence 12344677778889999999999999999755444
No 19
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=85.96 E-value=0.061 Score=58.22 Aligned_cols=127 Identities=16% Similarity=0.187 Sum_probs=87.9
Q ss_pred CCcEEEEeecCCeEEEEecCCCEEEEeecCCCCCCCCC--CCCccccee-ecccCCCcEEEEEecCCeEEEEEcCCcEEE
Q 011775 299 GNYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGS--TDDELSPNC-VSSLLGIQIEGVAAGLWHTICISSDGDVYA 375 (477)
Q Consensus 299 ~~~i~~I~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~--~~~~~~p~~-v~~~~~~~i~~i~~G~~hs~alt~~G~vy~ 375 (477)
..+++.|.+-.+-.++|..+|++|.|-+...--|-..- ..+...|.. ...+.+.+|+.+++..-..-++|++|+|-+
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlas 452 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLAS 452 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhh
Confidence 35688888888889999999999999887654443311 112222322 224456799999999999999999999999
Q ss_pred EeCCCCCCcCCCCC--CCcccceeecCCCCCCcceEEEEeCCCeEEEEECCCcEEEEEC
Q 011775 376 FGGNQFGQLGTGGD--QAETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVFCWGW 432 (477)
Q Consensus 376 wG~n~~gqLG~~~~--~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~al~~~g~vy~wG~ 432 (477)
|=... |.+-. .....-++++ ..+..+++.-|-..|.+|...|+-+|.||-
T Consensus 453 WlDEc----gagV~fkLa~ea~Tkie---ed~~maVqd~~~adhlaAf~~dniihWcGi 504 (3015)
T KOG0943|consen 453 WLDEC----GAGVAFKLAHEAQTKIE---EDGEMAVQDHCCADHLAAFLEDNIIHWCGI 504 (3015)
T ss_pred HHhhh----hhhhhhhhhhhhhhhhh---hhhHHHHHHHHHHHHHHHHhhhceeeEEee
Confidence 96432 22211 1122333443 455677777788899999999999999994
No 20
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=82.52 E-value=10 Score=34.53 Aligned_cols=28 Identities=18% Similarity=0.432 Sum_probs=24.9
Q ss_pred CcEEEEEeCCCeEEEEecCCcEEEEeCC
Q 011775 221 VRIATVAAGGRHTLALSDIGQVWGWGYG 248 (477)
Q Consensus 221 ~~i~~Ia~G~~h~~aLt~~G~vy~wG~n 248 (477)
.++..+.|-..+.++||.+|.+|+|--.
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~ 40 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLK 40 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 3788899999999999999999999653
No 21
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.51 E-value=11 Score=34.36 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=26.2
Q ss_pred CCcEEEEEecCCeEEEEEcCCcEEEEeCCC
Q 011775 351 GIQIEGVAAGLWHTICISSDGDVYAFGGNQ 380 (477)
Q Consensus 351 ~~~i~~i~~G~~hs~alt~~G~vy~wG~n~ 380 (477)
+.++..+.|-..+-+|||++|.+|+|=...
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 347888999999999999999999998654
No 22
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=77.46 E-value=19 Score=41.77 Aligned_cols=71 Identities=13% Similarity=0.103 Sum_probs=43.0
Q ss_pred CcEEEEEeCCCeE-EEEecCCcEEEEeCCCCCcccCCCCCccccCCcccCccccccCCCcccccccCccCCCCCCcccCC
Q 011775 221 VRIATVAAGGRHT-LALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSEGPGFRVPG 299 (477)
Q Consensus 221 ~~i~~Ia~G~~h~-~aLt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (477)
..|++|+.-..|. +||+++|++|.--.-..-+.-.++.....+.|..++. +
T Consensus 744 G~ik~l~lD~~~nL~Alt~~G~Lf~~~k~~WQ~~~~~~~~~~~W~~v~lP~----------------------------~ 795 (1774)
T PF11725_consen 744 GEIKDLALDEKQNLYALTSTGELFRLPKEAWQGNAEGDQMAAKWQKVALPD----------------------------E 795 (1774)
T ss_pred cchhheeeccccceeEecCCCceeecCHHHhhCcccCCccccCceeccCCC----------------------------C
Confidence 3799999988864 5789999999864322222112222223333443331 2
Q ss_pred CcEEEEeecCCeEEEEecCC
Q 011775 300 NYVKGIACGGRHSAVITDAG 319 (477)
Q Consensus 300 ~~i~~I~~G~~~~~~lt~~g 319 (477)
.++..+....+|.+.+.-++
T Consensus 796 ~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 796 QPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred CchhhhhcCCCCceEEEecC
Confidence 45888888888887776544
No 23
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=74.48 E-value=90 Score=30.94 Aligned_cols=121 Identities=16% Similarity=0.263 Sum_probs=57.0
Q ss_pred EecCCCCcEEEEEeCCC-eE-EEEecCCc-EEEEeCCCCCcccCCCCCccccCCcccCccccccCCCcccccccCccCCC
Q 011775 215 VTLNPGVRIATVAAGGR-HT-LALSDIGQ-VWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSE 291 (477)
Q Consensus 215 i~~~~~~~i~~Ia~G~~-h~-~aLt~~G~-vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~ 291 (477)
|+......+..|..|.. |. ++.+.||+ +|..+. .|.+..-+. .
T Consensus 21 iD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r--dg~vsviD~------------~-------------------- 66 (369)
T PF02239_consen 21 IDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR--DGTVSVIDL------------A-------------------- 66 (369)
T ss_dssp EETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET--TSEEEEEET------------T--------------------
T ss_pred EECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC--CCeEEEEEC------------C--------------------
Confidence 45545556888988765 55 55678786 777643 343322111 0
Q ss_pred CCCcccCCCcEEEEeecCC-eEEEEecCCCEEEEeecCCCCCCCCCCCCccccee-eccc------CCCcEEEEEecCC-
Q 011775 292 GPGFRVPGNYVKGIACGGR-HSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNC-VSSL------LGIQIEGVAAGLW- 362 (477)
Q Consensus 292 ~~~~~~~~~~i~~I~~G~~-~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~-v~~~------~~~~i~~i~~G~~- 362 (477)
....+..|..|.. +.++++.||+...-++-..+++-.-+... .+|.+ ++.. ...++..|.+-..
T Consensus 67 ------~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~t-le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~ 139 (369)
T PF02239_consen 67 ------TGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAET-LEPVKTIPTGGMPVDGPESRVAAIVASPGR 139 (369)
T ss_dssp ------SSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-SSS
T ss_pred ------cccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEecccc-ccceeecccccccccccCCCceeEEecCCC
Confidence 0123677777765 88889999996655654444444322222 11221 1110 1235555544332
Q ss_pred --eEEEEEcCCcEEEE
Q 011775 363 --HTICISSDGDVYAF 376 (477)
Q Consensus 363 --hs~alt~~G~vy~w 376 (477)
+.+.+.+.+++|.-
T Consensus 140 ~~fVv~lkd~~~I~vV 155 (369)
T PF02239_consen 140 PEFVVNLKDTGEIWVV 155 (369)
T ss_dssp SEEEEEETTTTEEEEE
T ss_pred CEEEEEEccCCeEEEE
Confidence 34445566777754
No 24
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=73.14 E-value=8.6 Score=23.27 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=21.8
Q ss_pred cEEEEEeCC-CeEEEEecCCcEEEE
Q 011775 222 RIATVAAGG-RHTLALSDIGQVWGW 245 (477)
Q Consensus 222 ~i~~Ia~G~-~h~~aLt~~G~vy~w 245 (477)
.+++|++|. +...+++.+|.||..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 799999999 999999999999964
No 25
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=72.29 E-value=8.2 Score=23.37 Aligned_cols=25 Identities=24% Similarity=0.419 Sum_probs=22.1
Q ss_pred CCEEEEecCc-ceEEEEecCCcEEEe
Q 011775 98 ASIVKAAAGW-AHCVAVTEGGEVYTW 122 (477)
Q Consensus 98 ~~i~~Ia~G~-~h~~~Lt~~G~vy~w 122 (477)
..+++|++|. ....+++.+|.||..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 3789999999 889999999999964
No 26
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=70.66 E-value=1.6e+02 Score=31.71 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=27.3
Q ss_pred cEEEEEec--CCeEEEEEcCCcEEEEeCCCCCCcCCCC
Q 011775 353 QIEGVAAG--LWHTICISSDGDVYAFGGNQFGQLGTGG 388 (477)
Q Consensus 353 ~i~~i~~G--~~hs~alt~~G~vy~wG~n~~gqLG~~~ 388 (477)
.+..++.- ..-.++.|-+|++=.|-.+...|+|.-+
T Consensus 522 dvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Id 559 (893)
T KOG0291|consen 522 DVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSID 559 (893)
T ss_pred ceeEEEEcCCCCeEEEEEecceEEEEEhhhceeecccc
Confidence 45555554 5567788899999999999999996543
No 27
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.72 E-value=1.2e+02 Score=34.74 Aligned_cols=46 Identities=26% Similarity=0.440 Sum_probs=30.1
Q ss_pred cccceEEecC--CCCcEEEEEeCCCeEEE--EecCCcEEEEeCCCCCccc
Q 011775 209 SAFPCLVTLN--PGVRIATVAAGGRHTLA--LSDIGQVWGWGYGGEGQLG 254 (477)
Q Consensus 209 ~~~P~~i~~~--~~~~i~~Ia~G~~h~~a--Lt~~G~vy~wG~n~~gqlG 254 (477)
..+|.....+ ....|++|+......+. +++.|.|-+|-....|+-+
T Consensus 229 ~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~ 278 (1311)
T KOG1900|consen 229 SLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGG 278 (1311)
T ss_pred HhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCccc
Confidence 3455544443 34589999998877655 4677888888665555443
No 28
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=62.32 E-value=1.3e+02 Score=27.78 Aligned_cols=25 Identities=8% Similarity=0.139 Sum_probs=18.2
Q ss_pred EEEEeecCC--eEEEEecCCCEEEEee
Q 011775 302 VKGIACGGR--HSAVITDAGALLTFGW 326 (477)
Q Consensus 302 i~~I~~G~~--~~~~lt~~g~vy~wG~ 326 (477)
|.+++...+ ..++.+..|++|+|-.
T Consensus 170 i~sl~v~~dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 170 IQSLTVMPDGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred eeeEEEcCCCcEEEEecCCccEEEEEc
Confidence 666666544 5667789999999953
No 29
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=61.79 E-value=1.3e+02 Score=27.71 Aligned_cols=104 Identities=12% Similarity=0.190 Sum_probs=55.3
Q ss_pred EeecCCeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEE--ecCCeEEEEEcCCcEEEEeCCCCC
Q 011775 305 IACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVA--AGLWHTICISSDGDVYAFGGNQFG 382 (477)
Q Consensus 305 I~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~--~G~~hs~alt~~G~vy~wG~n~~g 382 (477)
..|-....+-=.+||.+-.|---. + ..+...... .+|..|. --..+-+.-+.+|.|++|-....-
T Consensus 91 F~~dgrWMyTgseDgt~kIWdlR~---~--------~~qR~~~~~--spVn~vvlhpnQteLis~dqsg~irvWDl~~~~ 157 (311)
T KOG0315|consen 91 FQCDGRWMYTGSEDGTVKIWDLRS---L--------SCQRNYQHN--SPVNTVVLHPNQTELISGDQSGNIRVWDLGENS 157 (311)
T ss_pred EeecCeEEEecCCCceEEEEeccC---c--------ccchhccCC--CCcceEEecCCcceEEeecCCCcEEEEEccCCc
Confidence 334444555556788888884322 1 111111111 1333333 344555666788999999864421
Q ss_pred CcCCCCCCCcccceeecCCCCCCcceEEEEeCCCeE--EEEECCCcEEEEECCC
Q 011775 383 QLGTGGDQAETLPRLLDAPSLENVHSKSVSCGARHT--AVIADDGKVFCWGWNK 434 (477)
Q Consensus 383 qLG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs--~al~~~g~vy~wG~n~ 434 (477)
..-.+++ ..+..|.+++....-+ +|.++.|++|+|-.-.
T Consensus 158 ----------c~~~liP---e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 158 ----------CTHELIP---EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred ----------cccccCC---CCCcceeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence 1112222 1224566666665544 5678999999996533
No 30
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=61.62 E-value=97 Score=28.47 Aligned_cols=47 Identities=21% Similarity=0.043 Sum_probs=32.2
Q ss_pred CCcEEEEEecCCeEEEEEcCCcEEEEeCCCCCC-cCCCCCCCcccceee
Q 011775 351 GIQIEGVAAGLWHTICISSDGDVYAFGGNQFGQ-LGTGGDQAETLPRLL 398 (477)
Q Consensus 351 ~~~i~~i~~G~~hs~alt~~G~vy~wG~n~~gq-LG~~~~~~~~~p~~v 398 (477)
+-+|-+++.-+.|- ..-.+|+||+|=+|+.-. ++..+.-....|..+
T Consensus 62 dgpiy~~~f~d~~L-ls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~ 109 (325)
T KOG0649|consen 62 DGPIYYLAFHDDFL-LSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQV 109 (325)
T ss_pred CCCeeeeeeehhhe-eeccCceEEEeeehhhhhhccchhhhhhcCcccc
Confidence 44777787776663 444579999999998776 666655545556554
No 31
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.80 E-value=1.9e+02 Score=33.22 Aligned_cols=166 Identities=13% Similarity=0.187 Sum_probs=85.2
Q ss_pred EEEecCCcEEEEeCCCCCcccCCCCCccccCCcccCccccccCCCcccccccCccCCCCCCcccCCCcEEEEeecC----
Q 011775 234 LALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSEGPGFRVPGNYVKGIACGG---- 309 (477)
Q Consensus 234 ~aLt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~G~---- 309 (477)
+-+|.|.++|.|-.++.+++-.-+....... .| ..++...|-
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl--~V--------------------------------~LvkPkpgvFv~~ 138 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTIL--KV--------------------------------GLVKPKPGVFVPE 138 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhhe--ee--------------------------------eeecCCCCcchhh
Confidence 4578899999999988777655443221111 11 111112221
Q ss_pred -CeEEEEecCCCEEEEeecCCCC-CCCCCCCCcccceeecccCCCcEEEEEecCCeEEEEE-cCCcEE----EEeCCCCC
Q 011775 310 -RHSAVITDAGALLTFGWGLYGQ-CGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICIS-SDGDVY----AFGGNQFG 382 (477)
Q Consensus 310 -~~~~~lt~~g~vy~wG~n~~gq-lG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~alt-~~G~vy----~wG~n~~g 382 (477)
.|.+++..--+|+..|-...-. .+....... .+++ ..+..|..|.+-.+-=++++ ++|.|| -.+.+.++
T Consensus 139 IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~---~~i~-~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~ 214 (1311)
T KOG1900|consen 139 IQHLLVVATPVEIVILGVSFDEFTGELSIFNTS---FKIS-VDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFG 214 (1311)
T ss_pred hheeEEecccceEEEEEEEeccccCcccccccc---eeee-cCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhh
Confidence 4899999999999998643211 111111111 1111 12334544443333333333 333332 22233333
Q ss_pred CcCCC-C----CCCcccceeecCCCCCCcceEEEEeCCCeEEE--EECCCcEEEEECCCCCC
Q 011775 383 QLGTG-G----DQAETLPRLLDAPSLENVHSKSVSCGARHTAV--IADDGKVFCWGWNKYGQ 437 (477)
Q Consensus 383 qLG~~-~----~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~a--l~~~g~vy~wG~n~~gq 437 (477)
+--.. . ......|..+.++......|.+|+.+....+. +++.|.|-+|=-...|+
T Consensus 215 ~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~ 276 (1311)
T KOG1900|consen 215 SRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGL 276 (1311)
T ss_pred cccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCc
Confidence 31110 0 01123677666654446689999999887764 66778877774444443
No 32
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=58.70 E-value=3.2e+02 Score=30.98 Aligned_cols=27 Identities=15% Similarity=0.141 Sum_probs=22.9
Q ss_pred CcEEEEEeCCCe--EEEEecCCcEEEEeC
Q 011775 221 VRIATVAAGGRH--TLALSDIGQVWGWGY 247 (477)
Q Consensus 221 ~~i~~Ia~G~~h--~~aLt~~G~vy~wG~ 247 (477)
..|.+|+....+ .++|+.+|.|..|-.
T Consensus 427 ~~v~~vaf~~~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 427 SPVNDVAFSPSNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred CCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence 489999998888 899999998877753
No 33
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=58.11 E-value=1e+02 Score=32.83 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=22.2
Q ss_pred CEEEEecCcc----eEEEEecCCcEEEee
Q 011775 99 SIVKAAAGWA----HCVAVTEGGEVYTWG 123 (477)
Q Consensus 99 ~i~~Ia~G~~----h~~~Lt~~G~vy~wG 123 (477)
.+..|+||.. .++|||..|.|..+-
T Consensus 219 ~f~avaCg~gicAestfait~qGhLvEFS 247 (1080)
T KOG1408|consen 219 EFLAVACGVGICAESTFAITAQGHLVEFS 247 (1080)
T ss_pred hhhhhhhcCcccccceEEEecccceeeec
Confidence 4788999988 899999999998876
No 34
>PLN02153 epithiospecifier protein
Probab=55.34 E-value=2.1e+02 Score=27.82 Aligned_cols=18 Identities=28% Similarity=0.702 Sum_probs=12.7
Q ss_pred cceEEEEecCCcEEEecCC
Q 011775 54 CGFAMAISDSRKLITWGST 72 (477)
Q Consensus 54 ~~~~~~lt~~G~v~~wG~n 72 (477)
.+|+++.. +++||.+|-.
T Consensus 24 ~~h~~~~~-~~~iyv~GG~ 41 (341)
T PLN02153 24 CSHGIAVV-GDKLYSFGGE 41 (341)
T ss_pred CcceEEEE-CCEEEEECCc
Confidence 34776654 6899999853
No 35
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=52.29 E-value=45 Score=31.22 Aligned_cols=97 Identities=14% Similarity=0.145 Sum_probs=60.7
Q ss_pred cceEEEEEeecCCCCCCCCCcccc-ceEecCCCCCCcccccccccccceEEEEecCCcEEEecCCCCCCCccccCCCCCC
Q 011775 9 KMERVVFMWGYLPGALPQRSPILS-PLVVRLPLTVGSAWRDVCGGGCGFAMAISDSRKLITWGSTDDLGQSYVTSGKHGE 87 (477)
Q Consensus 9 ~~~~~v~~WG~~~g~lg~~~~~~~-p~~~~~~~~~~~~i~~v~~g~~~~~~~lt~~G~v~~wG~n~~~gqlg~~~~~~~~ 87 (477)
..||.||+=++..+.+|+..+..- -..+.+. .|..-|.+++..||..|..-...-.+++.......
T Consensus 70 apdG~VWft~qg~gaiGhLdP~tGev~~ypLg-----------~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~ev-- 136 (353)
T COG4257 70 APDGAVWFTAQGTGAIGHLDPATGEVETYPLG-----------SGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEV-- 136 (353)
T ss_pred CCCCceEEecCccccceecCCCCCceEEEecC-----------CCCCCceEEECCCCCeeEecCcceeEEecCcccce--
Confidence 589999998888888887665432 2233333 23445899999999999876542122322211111
Q ss_pred CCcccCCCCCCCEEEEecCcceEEEEecCCcEEEeeCC
Q 011775 88 IPEPFPLPTEASIVKAAAGWAHCVAVTEGGEVYTWGWK 125 (477)
Q Consensus 88 ~p~~v~~~~~~~i~~Ia~G~~h~~~Lt~~G~vy~wG~n 125 (477)
++++++ .+.+-+.--+++++..|.||.-|.+
T Consensus 137 --t~f~lp-----~~~a~~nlet~vfD~~G~lWFt~q~ 167 (353)
T COG4257 137 --TRFPLP-----LEHADANLETAVFDPWGNLWFTGQI 167 (353)
T ss_pred --EEeecc-----cccCCCcccceeeCCCccEEEeecc
Confidence 223333 2344456678899999999999964
No 36
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=51.77 E-value=44 Score=19.13 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=20.2
Q ss_pred CcEEEEEeCCCeEEEEecCCcEEE
Q 011775 221 VRIATVAAGGRHTLALSDIGQVWG 244 (477)
Q Consensus 221 ~~i~~Ia~G~~h~~aLt~~G~vy~ 244 (477)
+.|+.|++|.....+.|+.+-|-.
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRi 25 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRI 25 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEe
Confidence 479999999999999998876643
No 37
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=51.33 E-value=2.5e+02 Score=27.58 Aligned_cols=56 Identities=11% Similarity=0.097 Sum_probs=30.2
Q ss_pred CeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeecCCCCCCcceEEEEeCCCeEEEEECCCcEEEE
Q 011775 362 WHTICISSDGDVYAFGGNQFGQLGTGGDQAETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVFCW 430 (477)
Q Consensus 362 ~hs~alt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~al~~~g~vy~w 430 (477)
.+.++.+.+|.||++-... |++ . -..+.. .......-..-..+-++.+.+|+||++
T Consensus 321 ~~l~~~~~~G~l~~~d~~t-G~~--------~--~~~~~~--~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 321 GYLVVGDFEGYLHWLSRED-GSF--------V--ARLKTD--GSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEeCCCEEEEEECCC-CCE--------E--EEEEcC--CCccccCCEEECCEEEEEeCCceEEEe
Confidence 4667778899999885432 221 0 011110 000111122333577888899999986
No 38
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=45.59 E-value=24 Score=21.95 Aligned_cols=18 Identities=28% Similarity=0.543 Sum_probs=15.3
Q ss_pred CeEEEEEcCCcEEEEeCC
Q 011775 362 WHTICISSDGDVYAFGGN 379 (477)
Q Consensus 362 ~hs~alt~~G~vy~wG~n 379 (477)
-+.++++.+|.+|+-|.-
T Consensus 15 ~~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 15 GNGIAVDSNGNIYVTGYT 32 (38)
T ss_pred EEEEEECCCCCEEEEEee
Confidence 357899999999999964
No 39
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=43.37 E-value=3.5e+02 Score=27.01 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=20.1
Q ss_pred cEEEEEecCCeEEEEE--cCCcEEEEeCCC
Q 011775 353 QIEGVAAGLWHTICIS--SDGDVYAFGGNQ 380 (477)
Q Consensus 353 ~i~~i~~G~~hs~alt--~~G~vy~wG~n~ 380 (477)
-|.+-..|.+..++.. +|++||.|=.-.
T Consensus 442 iIrSCFgg~~~~fiaSGSED~kvyIWhr~s 471 (519)
T KOG0293|consen 442 IIRSCFGGGNDKFIASGSEDSKVYIWHRIS 471 (519)
T ss_pred EEEeccCCCCcceEEecCCCceEEEEEccC
Confidence 4666777777566654 689999998653
No 40
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=40.14 E-value=4.1e+02 Score=26.90 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=22.4
Q ss_pred cccCCCCCCCEEEEecCcceEEEEecCCcEEEeeCC
Q 011775 90 EPFPLPTEASIVKAAAGWAHCVAVTEGGEVYTWGWK 125 (477)
Q Consensus 90 ~~v~~~~~~~i~~Ia~G~~h~~~Lt~~G~vy~wG~n 125 (477)
..+.++....-..+++-..+.++...+|+||.|--+
T Consensus 339 ~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~ 374 (514)
T KOG2055|consen 339 TSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLR 374 (514)
T ss_pred heeeeccEEeeEEEecCCcEEEEEcCCceEEEEecC
Confidence 334444422223344555778888889999999744
No 41
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=39.37 E-value=2.4e+02 Score=26.63 Aligned_cols=61 Identities=16% Similarity=0.180 Sum_probs=37.8
Q ss_pred ccccccceEEEEecCCcEEEecCCCCCCCccccCCCCCCCCcccCCCCCCCEEEEecC---cceEEEEecCCcEEEee
Q 011775 49 VCGGGCGFAMAISDSRKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEASIVKAAAG---WAHCVAVTEGGEVYTWG 123 (477)
Q Consensus 49 v~~g~~~~~~~lt~~G~v~~wG~n~~~gqlg~~~~~~~~~p~~v~~~~~~~i~~Ia~G---~~h~~~Lt~~G~vy~wG 123 (477)
+..|+--|.++...||.||.-+... |.+|.-. |..-+++.+..| .-|.+++..||..|..-
T Consensus 58 vp~G~ap~dvapapdG~VWft~qg~--gaiGhLd------------P~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd 121 (353)
T COG4257 58 VPNGSAPFDVAPAPDGAVWFTAQGT--GAIGHLD------------PATGEVETYPLGSGASPHGIVVGPDGSAWITD 121 (353)
T ss_pred cCCCCCccccccCCCCceEEecCcc--ccceecC------------CCCCceEEEecCCCCCCceEEECCCCCeeEec
Confidence 3344445899999999999877653 4444211 111134444443 34778888888888775
No 42
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=38.99 E-value=5.9e+02 Score=28.33 Aligned_cols=69 Identities=13% Similarity=0.085 Sum_probs=38.6
Q ss_pred ccceEEEEecCCcEEEecCCCCCCCccccCCCCCCCCcccCCCCCCCEEEEecC-----cceEEEEecCCcEEEee
Q 011775 53 GCGFAMAISDSRKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEASIVKAAAG-----WAHCVAVTEGGEVYTWG 123 (477)
Q Consensus 53 ~~~~~~~lt~~G~v~~wG~n~~~gqlg~~~~~~~~~p~~v~~~~~~~i~~Ia~G-----~~h~~~Lt~~G~vy~wG 123 (477)
...+.+++|++|++|..-.. +....+. ..........+.+..+.+|+.+.+- ....+++|.+|.+--.-
T Consensus 545 t~d~LllfTs~Grv~~l~~~-~IP~~~r-~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~ 618 (800)
T TIGR01063 545 THDYLLFFTNRGKVYWLKVY-QIPEASR-TAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTS 618 (800)
T ss_pred CCCeEEEEeCCCcEEEEEhh-hCcCCCc-CCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEE
Confidence 33468888999999988322 1111110 1111122223455666778776652 23567788888776554
No 43
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=38.42 E-value=5.9e+02 Score=28.21 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=20.8
Q ss_pred CCcEEEEeecCCeEEEEecCCCEEEE
Q 011775 299 GNYVKGIACGGRHSAVITDAGALLTF 324 (477)
Q Consensus 299 ~~~i~~I~~G~~~~~~lt~~g~vy~w 324 (477)
+..|..|+|-.+|.+.-++++.|-.+
T Consensus 56 g~~v~~ia~~s~~f~~~s~~~tv~~y 81 (933)
T KOG1274|consen 56 GELVSSIACYSNHFLTGSEQNTVLRY 81 (933)
T ss_pred CceeEEEeecccceEEeeccceEEEe
Confidence 35689999999999998888876543
No 44
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=36.34 E-value=5e+02 Score=26.74 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=16.4
Q ss_pred cEEEEEeCCC-eEEEEecCCcEEEEeC
Q 011775 222 RIATVAAGGR-HTLALSDIGQVWGWGY 247 (477)
Q Consensus 222 ~i~~Ia~G~~-h~~aLt~~G~vy~wG~ 247 (477)
-|..+..+.+ -.+-=+++|.++.|+.
T Consensus 248 ~Vl~v~F~engdviTgDS~G~i~Iw~~ 274 (626)
T KOG2106|consen 248 FVLCVTFLENGDVITGDSGGNILIWSK 274 (626)
T ss_pred EEEEEEEcCCCCEEeecCCceEEEEeC
Confidence 4555555443 3344467899999986
No 45
>PRK05560 DNA gyrase subunit A; Validated
Probab=35.07 E-value=6.7e+02 Score=27.89 Aligned_cols=223 Identities=11% Similarity=0.004 Sum_probs=0.0
Q ss_pred CcccccccccccceEEEEecCCcEEEecCCCCCCCccccCCCCCCCCcccCCCCCCCEEEEecCc-----ceEEEEecCC
Q 011775 43 GSAWRDVCGGGCGFAMAISDSRKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEASIVKAAAGW-----AHCVAVTEGG 117 (477)
Q Consensus 43 ~~~i~~v~~g~~~~~~~lt~~G~v~~wG~n~~~gqlg~~~~~~~~~p~~v~~~~~~~i~~Ia~G~-----~h~~~Lt~~G 117 (477)
+.-+..+.|-...+.+++|+.|++|..=-.. =......+........+.+..+.+|+.+.+-. ...+++|.+|
T Consensus 537 D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~--iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~G 614 (805)
T PRK05560 537 DFVEHLFVASTHDTLLFFTNRGRVYRLKVYE--IPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNG 614 (805)
T ss_pred CeeEEEEEecCCCeEEEEecCCeEEEEEhhh--CcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCC
Q ss_pred cEEEeeCCCCCCCCCccCCCCCCcccccchhhcccccccccccCCcccccccCCCCCCCCCCCCCcCCCceeeeehhhcc
Q 011775 118 EVYTWGWKECVPSGRVFGDLSTGTGLDKDVFERQSSFLTEQVSPRSQVSRSSGGTSSGTDGRGSGEEGSKRRRISLAKQT 197 (477)
Q Consensus 118 ~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (477)
.+----..++
T Consensus 615 yiKRi~l~~~---------------------------------------------------------------------- 624 (805)
T PRK05560 615 TVKKTSLSEF---------------------------------------------------------------------- 624 (805)
T ss_pred EEEEEEhHHh----------------------------------------------------------------------
Q ss_pred cccCCCCCCcccccceEEecCCCCcEEEEEeCCCe--EEEEecCCcEEEEeCCCCCcccCCCCCccccCCcccCcccccc
Q 011775 198 AESSSSGDENLSAFPCLVTLNPGVRIATVAAGGRH--TLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSY 275 (477)
Q Consensus 198 ~~~~~~~~~~~~~~P~~i~~~~~~~i~~Ia~G~~h--~~aLt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~ 275 (477)
......-...+.+.++..++.+.....+ .+++|++|++|.+-....-..+.... ...+..+..
T Consensus 625 -------~~~~r~G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~------Gv~~i~L~~-- 689 (805)
T PRK05560 625 -------SNIRSNGIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTAR------GVRGIKLRE-- 689 (805)
T ss_pred -------hhcccCCceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccC------CcccccCCC--
Q ss_pred CCCcccccccCccCCCCCCcccCCCcEEEEeecCC---eEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCC
Q 011775 276 GKDRSAALSRGSVNSEGPGFRVPGNYVKGIACGGR---HSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGI 352 (477)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~G~~---~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~ 352 (477)
+.+|+.+.+-.. +.+++|+.|.+.-.=.+++-....+....... ..-......
T Consensus 690 -----------------------~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~kG~~~l-kl~~~~d~l 745 (805)
T PRK05560 690 -----------------------GDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGKGVITI-KITEKNGKL 745 (805)
T ss_pred -----------------------CCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCCcEEee-eccCCCCeE
Q ss_pred cEEEEEecCCeEEEEEcCCcEEEE
Q 011775 353 QIEGVAAGLWHTICISSDGDVYAF 376 (477)
Q Consensus 353 ~i~~i~~G~~hs~alt~~G~vy~w 376 (477)
-...+..+.+..+++|.+|++.-+
T Consensus 746 v~v~~v~~~~~v~i~T~~G~~lrf 769 (805)
T PRK05560 746 VGALPVDDDDEIMLITDSGKLIRT 769 (805)
T ss_pred EEEEEecCCCeEEEEecCCeEEEE
No 46
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=34.01 E-value=43 Score=21.69 Aligned_cols=16 Identities=31% Similarity=0.696 Sum_probs=11.5
Q ss_pred CeEEEEECCCcEEEEE
Q 011775 416 RHTAVIADDGKVFCWG 431 (477)
Q Consensus 416 ~hs~al~~~g~vy~wG 431 (477)
.|+++...+++||++|
T Consensus 4 ~h~~~~~~~~~i~v~G 19 (49)
T PF13418_consen 4 GHSAVSIGDNSIYVFG 19 (49)
T ss_dssp S-EEEEE-TTEEEEE-
T ss_pred eEEEEEEeCCeEEEEC
Confidence 6888888889999997
No 47
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=33.95 E-value=5.4e+02 Score=28.23 Aligned_cols=76 Identities=12% Similarity=0.140 Sum_probs=45.2
Q ss_pred ccccccccc-ccceEEEEecCCcEEEecCCCCCCCccccCCCCCCCCcccCCCCCCCEEEEecCcc--eEEEEecCCcEE
Q 011775 44 SAWRDVCGG-GCGFAMAISDSRKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEASIVKAAAGWA--HCVAVTEGGEVY 120 (477)
Q Consensus 44 ~~i~~v~~g-~~~~~~~lt~~G~v~~wG~n~~~gqlg~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~--h~~~Lt~~G~vy 120 (477)
..++.+..+ ...+.+++|++|++|.+-... .-. | ......+...+.+..+.+|+.+.+... +.+++|+.|.++
T Consensus 525 D~L~~~~~~~t~d~LllfTs~Gr~yrf~v~e-IP~-G--R~aGgpV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGK 600 (735)
T TIGR01062 525 DSEKAIIEGKSNQKVVFIDSTGRSYALDPDN-LPS-A--RGQGEPLTGKLLLPIGATITNILMYSPNQLLLMASDAGYGF 600 (735)
T ss_pred CeEEEEEEecCCCEEEEEECCCeEEEEEhHh-cCc-C--ccCCceeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCcEE
Confidence 444444332 333688889999999997653 321 2 111111222345566778888776543 578888888766
Q ss_pred Eee
Q 011775 121 TWG 123 (477)
Q Consensus 121 ~wG 123 (477)
-.-
T Consensus 601 rt~ 603 (735)
T TIGR01062 601 LCN 603 (735)
T ss_pred EEE
Confidence 654
No 48
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=33.67 E-value=1.1e+02 Score=29.43 Aligned_cols=36 Identities=19% Similarity=0.423 Sum_probs=24.9
Q ss_pred cceEEecCCCCcEEEEEeCCCe--EEEEecCCcEEEEe
Q 011775 211 FPCLVTLNPGVRIATVAAGGRH--TLALSDIGQVWGWG 246 (477)
Q Consensus 211 ~P~~i~~~~~~~i~~Ia~G~~h--~~aLt~~G~vy~wG 246 (477)
.+++........|.|.+...+- .++..+++.||.|-
T Consensus 344 ~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 344 CTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred CceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 4455555556678888876554 45558899999994
No 49
>PHA03098 kelch-like protein; Provisional
Probab=33.59 E-value=3.6e+02 Score=28.08 Aligned_cols=17 Identities=6% Similarity=-0.021 Sum_probs=11.7
Q ss_pred CeEEEEecCCcEEEEeCC
Q 011775 231 RHTLALSDIGQVWGWGYG 248 (477)
Q Consensus 231 ~h~~aLt~~G~vy~wG~n 248 (477)
.|+++.. +|+||.+|-.
T Consensus 335 ~~~~~~~-~~~lyv~GG~ 351 (534)
T PHA03098 335 NPGVTVF-NNRIYVIGGI 351 (534)
T ss_pred cceEEEE-CCEEEEEeCC
Confidence 3555444 7899999953
No 50
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=33.47 E-value=5.2e+02 Score=26.14 Aligned_cols=55 Identities=24% Similarity=0.302 Sum_probs=30.8
Q ss_pred eEEEEecCCcEEEecCCCCCCCccccCCCCCCCCcccCCCCCCCEEEEe--cCcceEEEEecCCcEEEee
Q 011775 56 FAMAISDSRKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEASIVKAA--AGWAHCVAVTEGGEVYTWG 123 (477)
Q Consensus 56 ~~~~lt~~G~v~~wG~n~~~gqlg~~~~~~~~~p~~v~~~~~~~i~~Ia--~G~~h~~~Lt~~G~vy~wG 123 (477)
|-++=+..|++|.|=-+. |.|-.--..+ ...|+.+. --+.|.+-=.+||.|..|=
T Consensus 95 ~l~ag~i~g~lYlWelss--G~LL~v~~aH-----------YQ~ITcL~fs~dgs~iiTgskDg~V~vW~ 151 (476)
T KOG0646|consen 95 FLLAGTISGNLYLWELSS--GILLNVLSAH-----------YQSITCLKFSDDGSHIITGSKDGAVLVWL 151 (476)
T ss_pred EEEeecccCcEEEEEecc--ccHHHHHHhh-----------ccceeEEEEeCCCcEEEecCCCccEEEEE
Confidence 444446899999999873 5543211111 11233333 3344444455788999996
No 51
>PF07312 DUF1459: Protein of unknown function (DUF1459); InterPro: IPR009924 This family consists of several hypothetical Caenorhabditis elegans proteins of around 85 residues in length. The function of this family is unknown.
Probab=32.95 E-value=33 Score=25.11 Aligned_cols=13 Identities=23% Similarity=0.496 Sum_probs=9.6
Q ss_pred EE-EEeecCCCCCC
Q 011775 13 VV-FMWGYLPGALP 25 (477)
Q Consensus 13 ~v-~~WG~~~g~lg 25 (477)
+| |.||+|.++-+
T Consensus 57 sv~waWGSNKnk~~ 70 (84)
T PF07312_consen 57 SVYWAWGSNKNKQA 70 (84)
T ss_pred ceeeeeccCCCCCC
Confidence 56 99999966543
No 52
>PHA02713 hypothetical protein; Provisional
Probab=32.88 E-value=6.1e+02 Score=26.73 Aligned_cols=209 Identities=7% Similarity=-0.048 Sum_probs=0.0
Q ss_pred cceEEEEecCCcEEEeeCCCCCCCCCccCCCCCCcccccchhhcccccccccccCCcccccccCCCCCCCCCCCCCcCCC
Q 011775 107 WAHCVAVTEGGEVYTWGWKECVPSGRVFGDLSTGTGLDKDVFERQSSFLTEQVSPRSQVSRSSGGTSSGTDGRGSGEEGS 186 (477)
Q Consensus 107 ~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (477)
..+..+..-++.||..| |.....
T Consensus 294 r~~~~~a~l~~~IYviG-------G~~~~~-------------------------------------------------- 316 (557)
T PHA02713 294 IINYASAIVDNEIIIAG-------GYNFNN-------------------------------------------------- 316 (557)
T ss_pred ccceEEEEECCEEEEEc-------CCCCCC--------------------------------------------------
Q ss_pred ceeeeehhhcccccCCCCCCcccccceEEecCCCCcEEEEE---eCCCeEEEEecCCcEEEEeCCCCCcccCCCCCcccc
Q 011775 187 KRRRISLAKQTAESSSSGDENLSAFPCLVTLNPGVRIATVA---AGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVS 263 (477)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~i~~~~~~~i~~Ia---~G~~h~~aLt~~G~vy~wG~n~~gqlG~~~~~~~~~ 263 (477)
....-...--+.......++ ....+..+..-+|+||++|-......-..-......
T Consensus 317 ---------------------~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~ 375 (557)
T PHA02713 317 ---------------------PSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMG 375 (557)
T ss_pred ---------------------CccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECC
Q ss_pred CCcccCccccccCCCcccccccCccCCCCCCcccCCCcEEEEeecCCeEEEEecCCCEEEEeecC----------CCCCC
Q 011775 264 SPHPIPCIESSYGKDRSAALSRGSVNSEGPGFRVPGNYVKGIACGGRHSAVITDAGALLTFGWGL----------YGQCG 333 (477)
Q Consensus 264 ~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~G~~~~~~lt~~g~vy~wG~n~----------~gqlG 333 (477)
.-+-.. +..+-....+..+..-+|+||+.|-.. .+.++
T Consensus 376 ~~~W~~--------------------------------~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~ 423 (557)
T PHA02713 376 DDKWKM--------------------------------LPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSID 423 (557)
T ss_pred CCeEEE--------------------------------CCCCCcccccccEEEECCEEEEEeCCCccccccccccccccc
Q ss_pred CCCCCCcccceeecccCCCcEEEEE---ecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeecCCC-CCCcceE
Q 011775 334 QGSTDDELSPNCVSSLLGIQIEGVA---AGLWHTICISSDGDVYAFGGNQFGQLGTGGDQAETLPRLLDAPS-LENVHSK 409 (477)
Q Consensus 334 ~~~~~~~~~p~~v~~~~~~~i~~i~---~G~~hs~alt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~-~~~~~i~ 409 (477)
.........-...-.+.......++ .......+..-+|+||+.|-.. +.......-....... -.-..+.
T Consensus 424 ~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~------~~~~~~~~ve~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 424 MEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIK------DEKNVKTCIFRYNTNTYNGWELIT 497 (557)
T ss_pred ccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCC------CCCccceeEEEecCCCCCCeeEcc
Q ss_pred EEEeCCCeEEEEECCCcEEEEE
Q 011775 410 SVSCGARHTAVIADDGKVFCWG 431 (477)
Q Consensus 410 ~i~~G~~hs~al~~~g~vy~wG 431 (477)
.+..-..+..+..-+|+||+.|
T Consensus 498 ~m~~~r~~~~~~~~~~~iyv~G 519 (557)
T PHA02713 498 TTESRLSALHTILHDNTIMMLH 519 (557)
T ss_pred ccCcccccceeEEECCEEEEEe
No 53
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=32.14 E-value=2.8e+02 Score=22.53 Aligned_cols=62 Identities=10% Similarity=0.059 Sum_probs=33.5
Q ss_pred EEeecCCeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecCCeEEEEEcCCcEEE
Q 011775 304 GIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYA 375 (477)
Q Consensus 304 ~I~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~alt~~G~vy~ 375 (477)
++.|-..+.+.+..||+|-+-.+ ..+...-..+.......|.=-.+-....+++++.|+||+
T Consensus 2 qLy~~~~~~L~I~~dG~V~Gt~~----------~~~~~s~l~~~s~~~g~v~i~~v~s~~YLCmn~~G~ly~ 63 (123)
T cd00058 2 QLYCRTGFHLQILPDGTVDGTRD----------DSSSYTILERIAVAVGVVSIKGVASCRYLCMNKCGKLYG 63 (123)
T ss_pred eEEEcCCeEEEEcCCCcEecccC----------CCCCCceEEEEECCCCEEEEEEcccceEEEECCCCCEEE
Confidence 45555578888999999975432 111111122222222122222223456788999999995
No 54
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=31.01 E-value=5.1e+02 Score=25.30 Aligned_cols=56 Identities=18% Similarity=-0.025 Sum_probs=28.6
Q ss_pred CeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecCCeEEEEEcCCcEEEE
Q 011775 310 RHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAF 376 (477)
Q Consensus 310 ~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~alt~~G~vy~w 376 (477)
.+.++.+.+|.||++-... |++-. ..+.....-...-+.-.++.++.+.+|+||++
T Consensus 321 ~~l~~~~~~G~l~~~d~~t-G~~~~----------~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 321 GYLVVGDFEGYLHWLSRED-GSFVA----------RLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEeCCCEEEEEECCC-CCEEE----------EEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 4667778889999874322 22100 00000000011112233567788899999986
No 55
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=30.13 E-value=8e+02 Score=27.28 Aligned_cols=122 Identities=10% Similarity=0.035 Sum_probs=60.9
Q ss_pred cCCeEEEEecCCCEEEEeecCCCCCCCCCCCCccccee-ecccCCCcEEEEEec--CCeEEEEEcCCcEEEEeCCCCCCc
Q 011775 308 GGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNC-VSSLLGIQIEGVAAG--LWHTICISSDGDVYAFGGNQFGQL 384 (477)
Q Consensus 308 G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~-v~~~~~~~i~~i~~G--~~hs~alt~~G~vy~wG~n~~gqL 384 (477)
..++.+++|++|++|.+=...--..+... .... +..-.+.+|+.+.+- ..+.+++|++|.+.-.=...+-..
T Consensus 649 ~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~-----~Gv~~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~ 723 (800)
T TIGR01063 649 GDDEVMLGSKNGKAVRFPEEDVRPMGRAA-----RGVRGIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRET 723 (800)
T ss_pred CCCEEEEEECCCcEEEEEhhhcCCcCCCC-----CCeecccCCCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHcccc
Confidence 44578999999999988655443333221 1122 222244567666553 335677888886664433222111
Q ss_pred CCCCCCCcccceeecCCCCCCcceEEE--EeCCCeEEEEECCCcEEEEECCCCCCcC
Q 011775 385 GTGGDQAETLPRLLDAPSLENVHSKSV--SCGARHTAVIADDGKVFCWGWNKYGQLG 439 (477)
Q Consensus 385 G~~~~~~~~~p~~v~~~~~~~~~i~~i--~~G~~hs~al~~~g~vy~wG~n~~gqLG 439 (477)
..+.. .-..+.+. ..+..++.+ .-.....++++++|.+..+-.++--..|
T Consensus 724 ~R~~k----Gv~~ikl~-~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~eI~~~g 775 (800)
T TIGR01063 724 SRGGK----GVKSIKIT-DRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQDVSEQG 775 (800)
T ss_pred CCCCc----ceEEEEcc-CCCCeEEEEEEecCCCeEEEEecCCeEEEeeHhhCCccc
Confidence 11000 00111110 011123322 2244457888889988877655443333
No 56
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=29.15 E-value=7.7e+02 Score=26.75 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=22.0
Q ss_pred CCcEEEEeecCC----eEEEEecCCCEEEE
Q 011775 299 GNYVKGIACGGR----HSAVITDAGALLTF 324 (477)
Q Consensus 299 ~~~i~~I~~G~~----~~~~lt~~g~vy~w 324 (477)
...+..++||.. .+++||..|.+.-|
T Consensus 217 ~n~f~avaCg~gicAestfait~qGhLvEF 246 (1080)
T KOG1408|consen 217 FNEFLAVACGVGICAESTFAITAQGHLVEF 246 (1080)
T ss_pred cchhhhhhhcCcccccceEEEecccceeee
Confidence 355888999987 99999999998866
No 57
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=28.91 E-value=6.2e+02 Score=25.54 Aligned_cols=68 Identities=21% Similarity=0.303 Sum_probs=44.7
Q ss_pred CeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeecCCCCCCcceEEEEeCCCeEEEE--ECCCcEEEEECC
Q 011775 362 WHTICISSDGDVYAFGGNQFGQLGTGGDQAETLPRLLDAPSLENVHSKSVSCGARHTAVI--ADDGKVFCWGWN 433 (477)
Q Consensus 362 ~hs~alt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~al--~~~g~vy~wG~n 433 (477)
.+++++.-||-+|+-|.- .|++-.-+..... ..-.+|. ...+|..|+.+.+-.... .+|+.|.+|-..
T Consensus 350 ~ts~~fHpDgLifgtgt~-d~~vkiwdlks~~--~~a~Fpg-ht~~vk~i~FsENGY~Lat~add~~V~lwDLR 419 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTP-DGVVKIWDLKSQT--NVAKFPG-HTGPVKAISFSENGYWLATAADDGSVKLWDLR 419 (506)
T ss_pred eEEeeEcCCceEEeccCC-CceEEEEEcCCcc--ccccCCC-CCCceeEEEeccCceEEEEEecCCeEEEEEeh
Confidence 678888899999988865 3566554433322 2223333 234799999988866544 467789999754
No 58
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=28.90 E-value=2.9e+02 Score=25.84 Aligned_cols=65 Identities=22% Similarity=0.325 Sum_probs=35.6
Q ss_pred ccceEEEEecCCcEEEecC-CCCCCCccccCCCCCCCCcccCCCCCCCEEEEecC--cceEEEEecCCcEEEee
Q 011775 53 GCGFAMAISDSRKLITWGS-TDDLGQSYVTSGKHGEIPEPFPLPTEASIVKAAAG--WAHCVAVTEGGEVYTWG 123 (477)
Q Consensus 53 ~~~~~~~lt~~G~v~~wG~-n~~~gqlg~~~~~~~~~p~~v~~~~~~~i~~Ia~G--~~h~~~Lt~~G~vy~wG 123 (477)
.++|++++- ++++|.||- |++.|....- ....|.- ..-....|....-| ..|++++-. ...|.+|
T Consensus 79 RYGHtvV~y-~d~~yvWGGRND~egaCN~L---y~fDp~t-~~W~~p~v~G~vPgaRDGHsAcV~g-n~MyiFG 146 (392)
T KOG4693|consen 79 RYGHTVVEY-QDKAYVWGGRNDDEGACNLL---YEFDPET-NVWKKPEVEGFVPGARDGHSACVWG-NQMYIFG 146 (392)
T ss_pred hcCceEEEE-cceEEEEcCccCccccccee---eeecccc-ccccccceeeecCCccCCceeeEEC-cEEEEec
Confidence 567887664 889999984 5434443211 1111110 11111234444433 678888774 4789998
No 59
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=28.68 E-value=8e+02 Score=26.76 Aligned_cols=123 Identities=14% Similarity=0.091 Sum_probs=66.2
Q ss_pred cEEEEEeCCCe--EEEEecCCcEEEEeCCCCCcccCCCCCccccCCcccCccccccCCCcccccccCccCCCCCCcccCC
Q 011775 222 RIATVAAGGRH--TLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSEGPGFRVPG 299 (477)
Q Consensus 222 ~i~~Ia~G~~h--~~aLt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (477)
-|-+++.+..- ++++...|.-.++|....|||..-+.......-+.-. .-
T Consensus 299 lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQg----------------------------H~ 350 (893)
T KOG0291|consen 299 LIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQG----------------------------HS 350 (893)
T ss_pred EEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccc----------------------------cc
Confidence 45566666543 4455556999999999999998654311111000000 00
Q ss_pred CcEEEEeecCCeEEEEe--cCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecCCeEEEEEcCCcEEEEe
Q 011775 300 NYVKGIACGGRHSAVIT--DAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAFG 377 (477)
Q Consensus 300 ~~i~~I~~G~~~~~~lt--~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~alt~~G~vy~wG 377 (477)
..+..++-..+-.++.| +||+|-.|-..+.-++ -+.-..-.+....+...-.+..+...-||.|-+|-
T Consensus 351 ~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~----------vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwD 420 (893)
T KOG0291|consen 351 DRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCF----------VTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWD 420 (893)
T ss_pred cceeeEEECCCCcEEEeccCCCcEEEEeccCceEE----------EEeccCCCceEEEEEEecCCEEEEeecCCeEEeee
Confidence 22555555555444443 6788888843221000 00011112334556666666666666799999999
Q ss_pred CCCCC
Q 011775 378 GNQFG 382 (477)
Q Consensus 378 ~n~~g 382 (477)
...|-
T Consensus 421 lkRYr 425 (893)
T KOG0291|consen 421 LKRYR 425 (893)
T ss_pred ecccc
Confidence 77654
No 60
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=27.81 E-value=7.5e+02 Score=26.19 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=18.7
Q ss_pred eEEEEeCCCeEEEEECCCcEEEEEC
Q 011775 408 SKSVSCGARHTAVIADDGKVFCWGW 432 (477)
Q Consensus 408 i~~i~~G~~hs~al~~~g~vy~wG~ 432 (477)
+..+.....+..+..-++++|+-|-
T Consensus 506 v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 506 VAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred cccCccccccccEEEECCEEEEEec
Confidence 3345567777777888999999985
No 61
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=27.68 E-value=3.2e+02 Score=21.89 Aligned_cols=65 Identities=14% Similarity=0.095 Sum_probs=39.2
Q ss_pred EEEEeecCCeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecCCeEEEEEcCCcEEEE
Q 011775 302 VKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAF 376 (477)
Q Consensus 302 i~~I~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~alt~~G~vy~w 376 (477)
.+++-|-..+.+.+..+|.|-+-++. .+....+....+.. ..|.=-.+-....+++++.|+||+-
T Consensus 2 ~~~Ly~~~~~~L~i~~~g~V~gt~~~-------~~~~s~~~i~~~~~---g~V~i~~~~s~~YLcmn~~G~ly~~ 66 (122)
T PF00167_consen 2 HVQLYCRTGYFLQINPNGTVDGTGDD-------NSPYSVFEIHSVGF---GVVRIRGVKSCRYLCMNKCGRLYGS 66 (122)
T ss_dssp EEEEEETTSEEEEEETTSBEEEESST-------TSTTGEEEEEEEET---TEEEEEETTTTEEEEEBTTSBEEEE
T ss_pred CEEEEECCCeEEEECCCCeEeCCCCc-------CcceeEEEEEeccc---eEEEEEEecceEEEEECCCCeEccc
Confidence 56788887899999999999876432 01111112222211 1233233334677999999999974
No 62
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=27.31 E-value=2.8e+02 Score=27.46 Aligned_cols=61 Identities=16% Similarity=0.216 Sum_probs=44.8
Q ss_pred EEEEeecCCe---EEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecCCeEEEEEcCCcEEEEe
Q 011775 302 VKGIACGGRH---SAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAFG 377 (477)
Q Consensus 302 i~~I~~G~~~---~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~alt~~G~vy~wG 377 (477)
+..+.++.++ .+++..+|++.-|-.+.. +.++ .....+.+|..-....+|++..|+||.+-
T Consensus 162 ~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~W--------------t~l~-~~~~~~~DIi~~kGkfYAvD~~G~l~~i~ 225 (373)
T PLN03215 162 LVKVKEGDNHRDGVLGIGRDGKINYWDGNVL--------------KALK-QMGYHFSDIIVHKGQTYALDSIGIVYWIN 225 (373)
T ss_pred EEEeecCCCcceEEEEEeecCcEeeecCCee--------------eEcc-CCCceeeEEEEECCEEEEEcCCCeEEEEe
Confidence 5557777776 777788999988853221 2222 24557889999999999999899999887
No 63
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=27.22 E-value=6.5e+02 Score=25.24 Aligned_cols=72 Identities=14% Similarity=0.184 Sum_probs=38.4
Q ss_pred CcEEEEEecCCeEEEEE--cCCcEEEEeCCCCCCcCCCCCCCcccceeecCCCCCCcceEEEEeCCCeEEEEE--CCCcE
Q 011775 352 IQIEGVAAGLWHTICIS--SDGDVYAFGGNQFGQLGTGGDQAETLPRLLDAPSLENVHSKSVSCGARHTAVIA--DDGKV 427 (477)
Q Consensus 352 ~~i~~i~~G~~hs~alt--~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~al~--~~g~v 427 (477)
.+|.++....+.-+||. .+.++..|-..+ ...+.+.........-|.+-..|.+..++.. +|++|
T Consensus 396 ~~its~~iS~d~k~~LvnL~~qei~LWDl~e-----------~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kv 464 (519)
T KOG0293|consen 396 QPITSFSISKDGKLALVNLQDQEIHLWDLEE-----------NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKV 464 (519)
T ss_pred CceeEEEEcCCCcEEEEEcccCeeEEeecch-----------hhHHHHhhcccccceEEEeccCCCCcceEEecCCCceE
Confidence 36777666655555554 467788887542 1122222211111222444444444456553 78999
Q ss_pred EEEECCC
Q 011775 428 FCWGWNK 434 (477)
Q Consensus 428 y~wG~n~ 434 (477)
|.|-+-.
T Consensus 465 yIWhr~s 471 (519)
T KOG0293|consen 465 YIWHRIS 471 (519)
T ss_pred EEEEccC
Confidence 9997654
No 64
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=27.12 E-value=1.5e+02 Score=28.62 Aligned_cols=56 Identities=14% Similarity=0.259 Sum_probs=37.0
Q ss_pred EecCCcEEEecCCCCCCCccccCCCCCCCCcccCCCCCCCEEEEecC--cceEEEEecCCcEEEeeC
Q 011775 60 ISDSRKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEASIVKAAAG--WAHCVAVTEGGEVYTWGW 124 (477)
Q Consensus 60 lt~~G~v~~wG~n~~~gqlg~~~~~~~~~p~~v~~~~~~~i~~Ia~G--~~h~~~Lt~~G~vy~wG~ 124 (477)
....|+||.|--... +....++.........|.|.+-. ....+++.++|.||-|-+
T Consensus 325 gnq~g~v~vwdL~~~---------ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 325 GNQSGKVYVWDLDNN---------EPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred ccCCCcEEEEECCCC---------CCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 357899999985321 12234444445556678886655 445567799999999973
No 65
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=26.98 E-value=1.3e+02 Score=17.02 Aligned_cols=19 Identities=16% Similarity=0.391 Sum_probs=14.2
Q ss_pred CeEEEEECCCcEEEEECCC
Q 011775 416 RHTAVIADDGKVFCWGWNK 434 (477)
Q Consensus 416 ~hs~al~~~g~vy~wG~n~ 434 (477)
-|.+++..+|+||+.-.+.
T Consensus 4 P~gvav~~~g~i~VaD~~n 22 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGN 22 (28)
T ss_dssp EEEEEEETTSEEEEEECCC
T ss_pred CcEEEEeCCCCEEEEECCC
Confidence 3678888999999875443
No 66
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=26.45 E-value=2.1e+02 Score=21.34 Aligned_cols=42 Identities=21% Similarity=0.300 Sum_probs=29.0
Q ss_pred cceEEecCCCCcEEEEEeC-CCeEEEEecCCcEEEEeCCCCCccc
Q 011775 211 FPCLVTLNPGVRIATVAAG-GRHTLALSDIGQVWGWGYGGEGQLG 254 (477)
Q Consensus 211 ~P~~i~~~~~~~i~~Ia~G-~~h~~aLt~~G~vy~wG~n~~gqlG 254 (477)
.|..+... ..=..|+|. ..-.++|+.||.+|+-+--..|++-
T Consensus 8 ~Pa~i~~~--~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~at 50 (81)
T PF03785_consen 8 HPASINLG--QTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNAT 50 (81)
T ss_dssp --SEEETT---SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEEE
T ss_pred cccccccc--ccEEEEEecCCCcEEEEecCCEEEEEEEecCceEE
Confidence 44445443 256789999 8999999999999999876676653
No 67
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=25.62 E-value=3.7e+02 Score=21.89 Aligned_cols=65 Identities=9% Similarity=0.148 Sum_probs=35.9
Q ss_pred cEEEEeecCCeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecCCeEEEEEcCCcEEE
Q 011775 301 YVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYA 375 (477)
Q Consensus 301 ~i~~I~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~alt~~G~vy~ 375 (477)
..+++.|-..+.+.+..+|.|-+- . +......-..+.......|.=-.+-....+++++.|+||+
T Consensus 3 R~~~Ly~~~~~~L~I~~~G~V~Gt--~--------~~~~~~~ile~~s~~~g~V~ik~~~s~~YLCmn~~G~ly~ 67 (126)
T smart00442 3 RLRQLYCRNGQHLQILPDGTVDGT--R--------DESSSFTILEIIAVAVGVVAIKGVASCRYLCMNKCGKLYG 67 (126)
T ss_pred eEEEEEeCCCeEEEEcCCceEecc--c--------CCCCcceEEEEEeccCCEEEEEEcccceEEEECCCCCEEE
Confidence 367777866577888889988643 1 1111111111211111123323334456789999999996
No 68
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=25.17 E-value=1.1e+02 Score=22.69 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=25.1
Q ss_pred cEEEEEec-CCeEEEEEcCCcEEEEeCCCCCCc
Q 011775 353 QIEGVAAG-LWHTICISSDGDVYAFGGNQFGQL 384 (477)
Q Consensus 353 ~i~~i~~G-~~hs~alt~~G~vy~wG~n~~gqL 384 (477)
.=..|+|. ....++|+.||.+|+-+--..|.+
T Consensus 17 tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 17 TSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred cEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 55679999 888999999999999886556654
No 69
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=24.66 E-value=2.9e+02 Score=27.40 Aligned_cols=62 Identities=21% Similarity=0.291 Sum_probs=42.5
Q ss_pred cEEEEEecCCe---EEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeecCCCCCCcceEEEEeCCCeEEEEECCCcEEE
Q 011775 353 QIEGVAAGLWH---TICISSDGDVYAFGGNQFGQLGTGGDQAETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVFC 429 (477)
Q Consensus 353 ~i~~i~~G~~h---s~alt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~al~~~g~vy~ 429 (477)
.+..+.+++++ .+++..+|++.-|-.+.. +.++ .....+.+|..-....+|++..|+||+
T Consensus 161 ~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~W--------------t~l~---~~~~~~~DIi~~kGkfYAvD~~G~l~~ 223 (373)
T PLN03215 161 ALVKVKEGDNHRDGVLGIGRDGKINYWDGNVL--------------KALK---QMGYHFSDIIVHKGQTYALDSIGIVYW 223 (373)
T ss_pred EEEEeecCCCcceEEEEEeecCcEeeecCCee--------------eEcc---CCCceeeEEEEECCEEEEEcCCCeEEE
Confidence 34446777776 677778899988864321 2222 234567888888888888888888888
Q ss_pred EE
Q 011775 430 WG 431 (477)
Q Consensus 430 wG 431 (477)
+-
T Consensus 224 i~ 225 (373)
T PLN03215 224 IN 225 (373)
T ss_pred Ee
Confidence 75
No 70
>PF09081 DUF1921: Domain of unknown function (DUF1921); InterPro: IPR015165 This domain, which is found in a set of prokaryotic amylases, has no known function []. ; PDB: 1QI5_A 1JDC_A 2AMG_A 1QPK_A 1JDD_A 1QI4_A 1JDA_A 1GCY_A 1QI3_A.
Probab=23.64 E-value=1.1e+02 Score=19.99 Aligned_cols=21 Identities=24% Similarity=0.684 Sum_probs=13.6
Q ss_pred ccccccccceEEEEec-CCcEEEe
Q 011775 47 RDVCGGGCGFAMAISD-SRKLITW 69 (477)
Q Consensus 47 ~~v~~g~~~~~~~lt~-~G~v~~w 69 (477)
-+|+.|. |+.++.+ +|.|-.|
T Consensus 29 ~qVasGs--fs~a~N~dnG~vRiW 50 (51)
T PF09081_consen 29 NQVASGS--FSQAVNEDNGQVRIW 50 (51)
T ss_dssp GGT-SS----EEEEEETTTTEEEE
T ss_pred ccccccc--hHhhhhccCCcEEee
Confidence 4677764 8888854 7888887
No 71
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=20.68 E-value=9e+02 Score=24.56 Aligned_cols=25 Identities=4% Similarity=0.015 Sum_probs=16.7
Q ss_pred cEEEEEecCCeEEEEEcCCcEEEEe
Q 011775 353 QIEGVAAGLWHTICISSDGDVYAFG 377 (477)
Q Consensus 353 ~i~~i~~G~~hs~alt~~G~vy~wG 377 (477)
.-..+.-+..+.++=+++|++|..=
T Consensus 221 ~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 221 KAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred eeEEEcccccEEEecCCcceEEeee
Confidence 3444555667777778888888543
No 72
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=20.44 E-value=5.9e+02 Score=25.08 Aligned_cols=113 Identities=14% Similarity=0.098 Sum_probs=0.0
Q ss_pred CeEEEEecCCCEEEEeecCCCCCCCCCCCC-----------------------------------cccceeecccCCCcE
Q 011775 310 RHSAVITDAGALLTFGWGLYGQCGQGSTDD-----------------------------------ELSPNCVSSLLGIQI 354 (477)
Q Consensus 310 ~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~-----------------------------------~~~p~~v~~~~~~~i 354 (477)
.|+.+...+++||++| +.... ...-..+-.+.....
T Consensus 131 ~~~~~~~~~~~IYv~G---------G~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W 201 (376)
T PRK14131 131 GHVAVSLHNGKAYITG---------GVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQW 201 (376)
T ss_pred ceEEEEeeCCEEEEEC---------CCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCee
Q ss_pred EEEEecCC----eEEEEEcCCcEEEEeCCCCCCcCCCCCC----CcccceeecCCCCCCcceEEEEeCCCeEEEEECCCc
Q 011775 355 EGVAAGLW----HTICISSDGDVYAFGGNQFGQLGTGGDQ----AETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGK 426 (477)
Q Consensus 355 ~~i~~G~~----hs~alt~~G~vy~wG~n~~gqLG~~~~~----~~~~p~~v~~~~~~~~~i~~i~~G~~hs~al~~~g~ 426 (477)
..+..-.. +..++..+++||..|-......-..... ....-+-...+.+...+.-...-+..+..+..-+++
T Consensus 202 ~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~ 281 (376)
T PRK14131 202 KNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGV 281 (376)
T ss_pred eECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCE
Q ss_pred EEEEE
Q 011775 427 VFCWG 431 (477)
Q Consensus 427 vy~wG 431 (477)
||+.|
T Consensus 282 iyv~G 286 (376)
T PRK14131 282 LLVAG 286 (376)
T ss_pred EEEee
Done!