Query 011775
Match_columns 477
No_of_seqs 238 out of 2186
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 15:04:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011775.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011775hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kci_A Probable E3 ubiquitin-p 100.0 6.7E-73 2.3E-77 564.4 32.1 365 7-475 15-387 (389)
2 1a12_A RCC1, regulator of chro 100.0 1.4E-69 4.8E-74 545.2 40.4 366 5-475 20-409 (413)
3 3mvd_K Regulator of chromosome 100.0 1.9E-68 6.6E-73 538.9 45.0 361 5-476 36-419 (423)
4 4d9s_A UVB-resistance protein 100.0 5.5E-69 1.9E-73 539.0 36.2 346 6-453 29-376 (406)
5 3of7_A Regulator of chromosome 100.0 1.7E-68 5.9E-73 545.6 39.2 364 8-475 25-450 (473)
6 4d9s_A UVB-resistance protein 100.0 7.8E-67 2.7E-71 523.3 37.5 330 44-475 16-347 (406)
7 3kci_A Probable E3 ubiquitin-p 100.0 4.1E-63 1.4E-67 493.8 27.0 320 55-475 11-335 (389)
8 1a12_A RCC1, regulator of chro 100.0 1.6E-61 5.5E-66 486.5 33.1 316 55-475 18-355 (413)
9 3mvd_K Regulator of chromosome 100.0 1.2E-60 4.2E-65 481.9 34.4 323 44-475 24-364 (423)
10 3of7_A Regulator of chromosome 100.0 1.7E-59 6E-64 479.0 32.3 351 44-475 10-395 (473)
11 3qhy_B Beta-lactamase inhibito 100.0 2E-56 6.8E-61 424.3 30.1 270 12-475 2-272 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 1.9E-48 6.3E-53 369.6 27.9 234 64-473 2-235 (282)
13 4gbf_A Phikz131; 7-bladed beta 96.5 0.0063 2.2E-07 53.8 7.2 72 300-384 309-380 (400)
14 4gbf_A Phikz131; 7-bladed beta 96.3 0.0079 2.7E-07 53.2 6.6 71 222-332 310-380 (400)
15 1p22_A F-BOX/WD-repeat protein 95.9 1.4 4.7E-05 43.0 26.8 158 221-434 257-414 (435)
16 2ovr_B FBW7, F-BOX/WD repeat p 94.7 3.4 0.00012 40.1 34.4 151 222-434 241-391 (445)
17 1p22_A F-BOX/WD-repeat protein 94.3 4.1 0.00014 39.5 30.8 149 222-432 215-363 (435)
18 2zwa_A Leucine carboxyl methyl 92.4 6.3 0.00021 41.3 18.7 17 107-123 441-458 (695)
19 1k3i_A Galactose oxidase precu 87.3 29 0.00099 35.8 25.9 72 362-437 458-534 (656)
20 2zwa_A Leucine carboxyl methyl 86.8 26 0.00087 36.6 17.8 18 230-247 441-459 (695)
21 2ovr_B FBW7, F-BOX/WD repeat p 84.8 29 0.00098 33.3 33.8 148 222-434 201-348 (445)
22 3no0_A DNA gyrase subunit A; D 82.5 28 0.00096 31.5 20.9 175 219-439 66-251 (276)
23 3odt_A Protein DOA1; ubiquitin 78.3 36 0.0012 30.2 25.8 97 312-434 198-296 (313)
24 2xyi_A Probable histone-bindin 77.7 50 0.0017 31.5 25.9 121 302-433 280-409 (430)
25 4aez_A CDC20, WD repeat-contai 76.1 53 0.0018 30.9 27.1 57 56-124 105-163 (401)
26 3k26_A Polycomb protein EED; W 75.7 48 0.0016 30.2 23.7 28 353-380 233-260 (366)
27 3sfz_A APAF-1, apoptotic pepti 74.8 91 0.0031 34.6 17.9 224 7-376 1020-1245(1249)
28 3no0_A DNA gyrase subunit A; D 73.9 51 0.0018 29.8 21.3 127 222-385 117-251 (276)
29 1gxr_A ESG1, transducin-like e 72.4 54 0.0018 29.4 33.6 105 302-434 186-296 (337)
30 4aez_A CDC20, WD repeat-contai 70.3 72 0.0025 29.9 24.5 69 301-380 178-248 (401)
31 3uc1_A DNA gyrase subunit A; D 70.1 70 0.0024 29.7 21.9 126 305-439 153-284 (327)
32 1yfq_A Cell cycle arrest prote 70.0 63 0.0022 29.1 24.6 121 300-434 151-282 (342)
33 3odt_A Protein DOA1; ubiquitin 67.2 67 0.0023 28.4 31.5 145 221-433 105-254 (313)
34 3ii7_A Kelch-like protein 7; p 64.5 74 0.0025 28.6 12.1 16 362-378 193-208 (306)
35 3p6j_A De novo designed beta-t 62.2 60 0.002 26.1 11.2 108 299-429 29-138 (142)
36 3p6j_A De novo designed beta-t 58.9 69 0.0023 25.7 12.7 106 220-375 29-138 (142)
37 3k26_A Polycomb protein EED; W 57.6 1.1E+02 0.0037 27.6 24.8 124 301-432 233-364 (366)
38 3v7d_B Cell division control p 56.1 1.4E+02 0.0048 28.4 31.4 109 300-434 271-381 (464)
39 1gxr_A ESG1, transducin-like e 55.7 1.1E+02 0.0038 27.1 30.8 106 302-434 144-255 (337)
40 1pgu_A Actin interacting prote 53.0 1.8E+02 0.0061 28.7 27.0 111 301-435 448-573 (615)
41 3uc1_A DNA gyrase subunit A; D 52.0 1.5E+02 0.0051 27.4 21.4 69 53-123 52-125 (327)
42 3mkq_A Coatomer beta'-subunit; 51.1 2.3E+02 0.0077 29.3 26.7 108 302-434 143-259 (814)
43 3v7d_B Cell division control p 49.4 1.8E+02 0.006 27.6 34.8 149 221-434 271-421 (464)
44 1k3i_A Galactose oxidase precu 47.6 81 0.0028 32.3 10.1 57 310-378 245-305 (656)
45 3mmy_A MRNA export factor; mRN 47.0 1.6E+02 0.0055 26.4 24.5 115 302-434 173-304 (368)
46 3i2n_A WD repeat-containing pr 46.9 1.6E+02 0.0055 26.4 22.4 239 43-430 18-287 (357)
47 1zvt_A Topoisomerase IV subuni 46.5 1.2E+02 0.0041 26.9 9.8 132 43-255 33-169 (256)
48 1r5m_A SIR4-interacting protei 46.0 1.8E+02 0.0062 26.7 24.3 106 302-433 250-360 (425)
49 4g56_B MGC81050 protein; prote 45.8 1.8E+02 0.0062 26.7 32.4 106 302-434 229-343 (357)
50 3mmy_A MRNA export factor; mRN 45.6 1.7E+02 0.0057 26.3 22.9 111 301-434 129-247 (368)
51 3no2_A Uncharacterized protein 45.1 1.6E+02 0.0056 26.0 21.7 23 363-386 245-267 (276)
52 1xip_A Nucleoporin NUP159; bet 45.0 61 0.0021 31.0 8.0 76 341-433 79-154 (388)
53 1zvu_A Topoisomerase IV subuni 43.8 2.7E+02 0.0093 28.8 12.8 69 51-123 511-581 (716)
54 4gga_A P55CDC, cell division c 42.1 2.2E+02 0.0076 26.6 25.9 95 7-123 120-215 (420)
55 1yfq_A Cell cycle arrest prote 41.2 1.9E+02 0.0066 25.7 20.4 28 222-249 152-179 (342)
56 1xip_A Nucleoporin NUP159; bet 39.6 2.5E+02 0.0086 26.6 12.7 98 302-430 90-187 (388)
57 3jrp_A Fusion protein of prote 35.3 2.5E+02 0.0085 25.2 26.1 107 310-433 173-286 (379)
58 3mkq_A Coatomer beta'-subunit; 33.3 4.2E+02 0.014 27.2 25.2 108 302-433 100-216 (814)
59 1suu_A DNA gyrase subunit A; t 32.9 2.8E+02 0.0097 25.2 23.8 177 217-435 96-284 (312)
60 4a11_B DNA excision repair pro 32.8 2.8E+02 0.0097 25.2 31.4 126 302-434 189-323 (408)
61 1suu_A DNA gyrase subunit A; t 32.7 2.9E+02 0.0098 25.2 20.2 175 225-440 53-237 (312)
62 3q7x_A De novo designed beta-t 32.2 1.8E+02 0.0062 22.7 8.7 105 302-430 8-114 (132)
63 1wp5_A Topoisomerase IV; broke 30.6 3.2E+02 0.011 25.1 23.3 69 53-123 49-122 (323)
64 1sq9_A Antiviral protein SKI8; 30.5 3.1E+02 0.011 24.9 23.2 72 44-123 17-97 (397)
65 2xyi_A Probable histone-bindin 30.5 3.4E+02 0.012 25.4 23.7 79 301-379 323-409 (430)
66 3f3f_A Nucleoporin SEH1; struc 29.5 2.9E+02 0.0098 24.2 26.3 28 221-248 111-142 (351)
67 2uvk_A YJHT; unknown function, 29.2 1.1E+02 0.0039 28.0 7.1 17 361-378 110-126 (357)
68 2z2n_A Virginiamycin B lyase; 28.6 2.8E+02 0.0097 23.8 21.5 16 56-71 18-33 (299)
69 1q7f_A NHL, brain tumor CG1071 27.6 3E+02 0.01 23.8 17.4 15 109-123 124-138 (286)
70 2woz_A Kelch repeat and BTB do 26.4 2E+02 0.0068 25.8 8.1 16 362-378 151-166 (318)
71 1q7f_A NHL, brain tumor CG1071 26.3 3.1E+02 0.011 23.6 23.1 17 363-379 210-226 (286)
72 1wp5_A Topoisomerase IV; broke 25.3 4E+02 0.014 24.4 24.3 127 305-440 151-283 (323)
73 2pm9_A Protein WEB1, protein t 23.9 4.1E+02 0.014 24.2 21.5 230 56-430 71-333 (416)
74 4a11_B DNA excision repair pro 23.3 4.1E+02 0.014 24.0 31.1 118 300-436 246-367 (408)
75 3zwl_B Eukaryotic translation 21.8 4.2E+02 0.014 23.4 22.7 68 353-433 177-248 (369)
76 3zwl_B Eukaryotic translation 20.6 4.4E+02 0.015 23.3 28.2 60 309-379 187-248 (369)
No 1
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=6.7e-73 Score=564.41 Aligned_cols=365 Identities=26% Similarity=0.438 Sum_probs=312.5
Q ss_pred cccceEEEEEeecC-CCCCCCCCcc--ccceEecCCCCCCcccccccccccceEEEEecCCcEEEecCCCCCCCccccCC
Q 011775 7 EEKMERVVFMWGYL-PGALPQRSPI--LSPLVVRLPLTVGSAWRDVCGGGCGFAMAISDSRKLITWGSTDDLGQSYVTSG 83 (477)
Q Consensus 7 ~~~~~~~v~~WG~~-~g~lg~~~~~--~~p~~~~~~~~~~~~i~~v~~g~~~~~~~lt~~G~v~~wG~n~~~gqlg~~~~ 83 (477)
..+.+++||+||.| .||||..... ..|+++.... ..+|++|++|.. |+++|+++|+||+||.|. +||||.+..
T Consensus 15 ~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~--~~~i~~i~~G~~-~~~~l~~~G~v~~wG~n~-~GqLG~g~~ 90 (389)
T 3kci_A 15 YFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALA--TLRPVQLIGGEQ-TLFAVTADGKLYATGYGA-GGRLGIGGT 90 (389)
T ss_dssp ------CEEEEEECTTSTTSSCSCSEEEEEEECHHHH--HTCEEEEEEETT-EEEEEETTSCEEEEECCG-GGTTSSSSS
T ss_pred eECCCCeEEEeeCCCCccCCCCcCccccCCEeccccc--CCceEEEEeCCC-eEEEEcCCCcEEEEECCC-CCCCCCCCc
Confidence 34689999999999 9999976544 4455555432 368899999876 999999999999999996 899998877
Q ss_pred CCCCCCcccCCCCCC--CEEEEecCcceEEEEecCCcEEEeeCCCCCCCCCccCCCCCCcccccchhhcccccccccccC
Q 011775 84 KHGEIPEPFPLPTEA--SIVKAAAGWAHCVAVTEGGEVYTWGWKECVPSGRVFGDLSTGTGLDKDVFERQSSFLTEQVSP 161 (477)
Q Consensus 84 ~~~~~p~~v~~~~~~--~i~~Ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (477)
.....|.+++..... ++++|+||..|++||+++|+||+||.|.+||||...
T Consensus 91 ~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~--------------------------- 143 (389)
T 3kci_A 91 ESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGN--------------------------- 143 (389)
T ss_dssp CCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSS---------------------------
T ss_pred CCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCC---------------------------
Confidence 666677777655544 457899999999999999999999999999998521
Q ss_pred CcccccccCCCCCCCCCCCCCcCCCceeeeehhhcccccCCCCCCcccccceEEecCCCCcEEEEEeCCCeEEEEecCCc
Q 011775 162 RSQVSRSSGGTSSGTDGRGSGEEGSKRRRISLAKQTAESSSSGDENLSAFPCLVTLNPGVRIATVAAGGRHTLALSDIGQ 241 (477)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~i~~~~~~~i~~Ia~G~~h~~aLt~~G~ 241 (477)
......|.+++.+...+|++|+||..|++||+++|+
T Consensus 144 --------------------------------------------~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~ 179 (389)
T 3kci_A 144 --------------------------------------------RSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGD 179 (389)
T ss_dssp --------------------------------------------CCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSC
T ss_pred --------------------------------------------CccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCe
Confidence 112346777777777799999999999999999999
Q ss_pred EEEEeCCCCCcccCCCCCccccCCcccCccccccCCCcccccccCccCCCCCCcccCCCcEEEEeecC--CeEEEEecCC
Q 011775 242 VWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSEGPGFRVPGNYVKGIACGG--RHSAVITDAG 319 (477)
Q Consensus 242 vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~G~--~~~~~lt~~g 319 (477)
||+||.|.+||||.++.. ....|.+++.+.. .+|++|+||. .|+++|+++|
T Consensus 180 v~~wG~n~~GqLG~~~~~-~~~~p~~v~~~~~--------------------------~~v~~ia~G~g~~~t~~l~~~G 232 (389)
T 3kci_A 180 LYTWGKGRYGRLGHSDSE-DQLKPKLVEALQG--------------------------HRVVDIACGSGDAQTLCLTDDD 232 (389)
T ss_dssp EEEEECCGGGTTCSSSCC-CEEEEEECGGGTT--------------------------SCEEEEEECCSSCEEEEEETTT
T ss_pred EEEeCCCCCCCcCCCCCc-ccccceEecccCC--------------------------CeEEEEEEcCCCcEEEEEccCC
Confidence 999999999999998763 3455776654443 6799999995 8999999999
Q ss_pred CEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeec
Q 011775 320 ALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAFGGNQFGQLGTGGDQAETLPRLLD 399 (477)
Q Consensus 320 ~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~alt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~ 399 (477)
+||+||.|.+||||.+.......|.+++.+.+.+|++|+||.+|++||+++|+||+||.|.+||||.+.......|+.++
T Consensus 233 ~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~ 312 (389)
T 3kci_A 233 TVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 312 (389)
T ss_dssp EEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECG
T ss_pred EEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEec
Confidence 99999999999999999888899999999888899999999999999999999999999999999999887778888887
Q ss_pred CCCCCCcceEEEEeCCCeEEEEECCCcEEEEECCCCCCcCCCCCCCccccEEEe-eCCCceEEEEecCCeeEEEEcC
Q 011775 400 APSLENVHSKSVSCGARHTAVIADDGKVFCWGWNKYGQLGLGDVIDRNIPSQVT-IEGCVPRNVACGWWHTLLLAVP 475 (477)
Q Consensus 400 ~~~~~~~~i~~i~~G~~hs~al~~~g~vy~wG~n~~gqLG~g~~~~~~~P~~v~-~~~~~v~~v~~G~~hs~~l~~~ 475 (477)
.+.+.+|++|+||.+|++||+++|+||+||.|.+||||++...+...|++|+ +.+.+|.+|+||.+|++||+++
T Consensus 313 --~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~v~~va~G~~ht~al~~~ 387 (389)
T 3kci_A 313 --GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTLAWSTS 387 (389)
T ss_dssp --GGTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCCCEEEEETTEEEEECC-
T ss_pred --cCCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEecccCCCCEEEEEecCCcEEEEecC
Confidence 4667789999999999999999999999999999999999999999999997 4577999999999999999987
No 2
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=1.4e-69 Score=545.18 Aligned_cols=366 Identities=27% Similarity=0.427 Sum_probs=303.8
Q ss_pred cccccceEEEEEeecC-CCCCCCCCcc---ccceEecCCCCCCcccccccccccceEEEEecCCcEEEecCCCCCCCccc
Q 011775 5 GQEEKMERVVFMWGYL-PGALPQRSPI---LSPLVVRLPLTVGSAWRDVCGGGCGFAMAISDSRKLITWGSTDDLGQSYV 80 (477)
Q Consensus 5 ~~~~~~~~~v~~WG~~-~g~lg~~~~~---~~p~~~~~~~~~~~~i~~v~~g~~~~~~~lt~~G~v~~wG~n~~~gqlg~ 80 (477)
-+....+++||+||.| .||||.+... ..|+++..+ .+|++|++|.. |+++|+++|+||+||.|. +||||.
T Consensus 20 ~~~l~~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~~----~~i~~va~G~~-hs~~l~~~G~v~~wG~n~-~GqLG~ 93 (413)
T 1a12_A 20 RSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP----EDVVQAEAGGM-HTVCLSKSGQVYSFGCND-EGALGR 93 (413)
T ss_dssp TTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCS----SCEEEEEECSS-EEEEEETTSCEEEEECCT-TSTTCS
T ss_pred ceeecCCCcEEEEECCCCCcCCCCCCccccccceEccCC----CCeEEEEeCCC-eEEEEcCCCCEEEEECCC-CCCCCC
Confidence 3556789999999999 9999998753 355555543 79999999986 999999999999999996 899998
Q ss_pred cCCC--CCCCCcccCCCCCCCEEEEecCcceEEEEecCCcEEEeeC--CCCCCCCCccCCCCCCcccccchhhccccccc
Q 011775 81 TSGK--HGEIPEPFPLPTEASIVKAAAGWAHCVAVTEGGEVYTWGW--KECVPSGRVFGDLSTGTGLDKDVFERQSSFLT 156 (477)
Q Consensus 81 ~~~~--~~~~p~~v~~~~~~~i~~Ia~G~~h~~~Lt~~G~vy~wG~--n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (477)
+... ....|.++.++. +|++|+||..|++||+++|+||+||. |.+||||....
T Consensus 94 ~~~~~~~~~~P~~v~l~~--~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~--------------------- 150 (413)
T 1a12_A 94 DTSVEGSEMVPGKVELQE--KVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEP--------------------- 150 (413)
T ss_dssp CCCSTTGGGSCEECCCCS--CEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBB---------------------
T ss_pred CCCCCccccCCeEecCCC--cEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCc---------------------
Confidence 7653 334677776543 89999999999999999999999998 88988874210
Q ss_pred ccccCCcccccccCCCCCCCCCCCCCcCCCceeeeehhhcccccCCCCCCcccccceEEecCCCCcEEEEEeCCCeEEEE
Q 011775 157 EQVSPRSQVSRSSGGTSSGTDGRGSGEEGSKRRRISLAKQTAESSSSGDENLSAFPCLVTLNPGVRIATVAAGGRHTLAL 236 (477)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~i~~~~~~~i~~Ia~G~~h~~aL 236 (477)
......|.++ +...+|++|+||.+|+++|
T Consensus 151 -------------------------------------------------~~~~~~P~~v--~~~~~i~~ia~G~~hs~al 179 (413)
T 1a12_A 151 -------------------------------------------------MKKSMVPVQV--QLDVPVVKVASGNDHLVML 179 (413)
T ss_dssp -------------------------------------------------TBCEEEEEEE--CCSSCEEEEEECSSEEEEE
T ss_pred -------------------------------------------------cccccCCEEe--cCCCCEEEEEecCceEEEE
Confidence 0012246655 3455899999999999999
Q ss_pred ecCCcEEEEeCCCCCcccCCCCCc----------cccCCcccCccccccCCCcccccccCccCCCCCCcccCCCcEEEEe
Q 011775 237 SDIGQVWGWGYGGEGQLGLGSRIR----------MVSSPHPIPCIESSYGKDRSAALSRGSVNSEGPGFRVPGNYVKGIA 306 (477)
Q Consensus 237 t~~G~vy~wG~n~~gqlG~~~~~~----------~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~ 306 (477)
+++|+||+||.|.+||||.+.... ....|+.+..... ......+|++|+
T Consensus 180 t~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~---------------------g~~~~~~i~~ia 238 (413)
T 1a12_A 180 TADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSR---------------------GSRGHVRFQDAF 238 (413)
T ss_dssp ETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCS---------------------SCCSBCCEEEEE
T ss_pred cCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccc---------------------cccCCccEEEEE
Confidence 999999999999999999875321 1123332221100 001235699999
Q ss_pred ecCCeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCC--CcEEEEEecCCeEEEEEcCCcEEEEeCCCCCCc
Q 011775 307 CGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLG--IQIEGVAAGLWHTICISSDGDVYAFGGNQFGQL 384 (477)
Q Consensus 307 ~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~--~~i~~i~~G~~hs~alt~~G~vy~wG~n~~gqL 384 (477)
||.+|+++|+++|+||+||.|.+||||.+.......|.++..+.+ .+|++|+||.+|++||+++|+||+||.|.+|||
T Consensus 239 ~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqL 318 (413)
T 1a12_A 239 CGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRL 318 (413)
T ss_dssp EETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTT
T ss_pred eCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCcc
Confidence 999999999999999999999999999999888899999998876 579999999999999999999999999999999
Q ss_pred CCCC-CCCcccceeecCCCCCCcceEEEEeCCCeEEEEECCCcEEEEECCCCCCcCCCCCCCccccEEEee---CCCceE
Q 011775 385 GTGG-DQAETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVFCWGWNKYGQLGLGDVIDRNIPSQVTI---EGCVPR 460 (477)
Q Consensus 385 G~~~-~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~al~~~g~vy~wG~n~~gqLG~g~~~~~~~P~~v~~---~~~~v~ 460 (477)
|.+. ......|++++. +. +|++|+||.+|++||+++|+||+||.|.+||||.++..+...|++|+. .+.+|.
T Consensus 319 G~g~~~~~~~~P~~v~~--l~--~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~~~v~ 394 (413)
T 1a12_A 319 GLGEGAEEKSIPTLISR--LP--AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVL 394 (413)
T ss_dssp CSCTTCCCEEEEEECCS--SS--SEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTTTEEEE
T ss_pred CCCCCCccccCCEEecc--cC--ceeEEEECcceEEEEeCCCCEEEecCCCCCCCCCCCCCCcccCeEccccccCCCeEE
Confidence 9994 444568888874 33 799999999999999999999999999999999999988999999973 466899
Q ss_pred EEEecCCeeEEEEcC
Q 011775 461 NVACGWWHTLLLAVP 475 (477)
Q Consensus 461 ~v~~G~~hs~~l~~~ 475 (477)
+|+||.+|+++|+++
T Consensus 395 ~v~~G~~ht~~l~~~ 409 (413)
T 1a12_A 395 SVSSGGQHTVLLVKD 409 (413)
T ss_dssp EEEECSSEEEEEEEE
T ss_pred EEeeCCCcEEEEEec
Confidence 999999999999986
No 3
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=1.9e-68 Score=538.93 Aligned_cols=361 Identities=21% Similarity=0.316 Sum_probs=298.1
Q ss_pred cccccceEEEEEeecC-CCCCCCCCc-cccceEecCCCCCCcccccccccccceEEEEecCCcEEEecCCCCCCCccccC
Q 011775 5 GQEEKMERVVFMWGYL-PGALPQRSP-ILSPLVVRLPLTVGSAWRDVCGGGCGFAMAISDSRKLITWGSTDDLGQSYVTS 82 (477)
Q Consensus 5 ~~~~~~~~~v~~WG~~-~g~lg~~~~-~~~p~~~~~~~~~~~~i~~v~~g~~~~~~~lt~~G~v~~wG~n~~~gqlg~~~ 82 (477)
.+....+++||+||.| .||||.+.. ...+.|.+++.. ..|++|++|+. |+++|+++|+||+||.|. +||||.+.
T Consensus 36 ~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l--~~v~~va~G~~-h~~~l~~~G~v~~wG~n~-~GqLG~~~ 111 (423)
T 3mvd_K 36 PKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGI--PDAVDISAGGM-HNLVLTKSGDIYSFGCND-EGALGRDT 111 (423)
T ss_dssp CCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSC--SSEEEEEECSS-EEEEEETTSCEEEEECCS-SSTTCSCC
T ss_pred ceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCC--CCceEEeeCCC-eEEEEeCCCeEEEeECCC-CcCCCCCC
Confidence 4556799999999999 999999864 233444444444 67999999986 999999999999999996 89999877
Q ss_pred CCC--CCCCcccCCCCCCCEEEEecCcceEEEEecCCcEEEeeC--CCCCCCCCccCCCCCCcccccchhhccccccccc
Q 011775 83 GKH--GEIPEPFPLPTEASIVKAAAGWAHCVAVTEGGEVYTWGW--KECVPSGRVFGDLSTGTGLDKDVFERQSSFLTEQ 158 (477)
Q Consensus 83 ~~~--~~~p~~v~~~~~~~i~~Ia~G~~h~~~Lt~~G~vy~wG~--n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (477)
... ...|.++.++ .+|++|+||..|++||+++|+||+||. |.+||||.....
T Consensus 112 ~~~~~~~~P~~v~~~--~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~---------------------- 167 (423)
T 3mvd_K 112 SEDGSESKPDLIDLP--GKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDG---------------------- 167 (423)
T ss_dssp CSTTSSSSCEECCCS--SCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTB----------------------
T ss_pred cCCccccCCeEEcCC--CCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCC----------------------
Confidence 654 3455555544 489999999999999999999999998 999988852110
Q ss_pred ccCCcccccccCCCCCCCCCCCCCcCCCceeeeehhhcccccCCCCCCcccccceEEecCCCCcEEEEEeCCCeEEEEec
Q 011775 159 VSPRSQVSRSSGGTSSGTDGRGSGEEGSKRRRISLAKQTAESSSSGDENLSAFPCLVTLNPGVRIATVAAGGRHTLALSD 238 (477)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~i~~~~~~~i~~Ia~G~~h~~aLt~ 238 (477)
. .|.++..+...+|++|+||.+|++||++
T Consensus 168 -------------------------------------------------~--~~~p~~~~~~~~i~~va~G~~hs~alt~ 196 (423)
T 3mvd_K 168 -------------------------------------------------N--KRTPIDLMEGTVCCSIASGADHLVILTT 196 (423)
T ss_dssp -------------------------------------------------C--EEEEEESSTTCCEEEEEECSSEEEEEET
T ss_pred -------------------------------------------------C--CceeeEecCCCcEEEEecCCCeEEEEec
Confidence 1 1333455666799999999999999999
Q ss_pred CCcEEEEeCCCCCcccCCCCCc----------cccCCcccCccccccCCCcccccccCccCCCCCCcccCCCcEEEEeec
Q 011775 239 IGQVWGWGYGGEGQLGLGSRIR----------MVSSPHPIPCIESSYGKDRSAALSRGSVNSEGPGFRVPGNYVKGIACG 308 (477)
Q Consensus 239 ~G~vy~wG~n~~gqlG~~~~~~----------~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~G 308 (477)
+|+||+||.|.+||||.+.... ....|.++... ...+|++|+||
T Consensus 197 ~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~--------------------------~~~~v~~i~~g 250 (423)
T 3mvd_K 197 AGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIIT--------------------------RAKPFEAIWAT 250 (423)
T ss_dssp TSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCT--------------------------TCCCEEEEEEE
T ss_pred CCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeec--------------------------CCccEEEEEEC
Confidence 9999999999999999976532 12233333322 23579999999
Q ss_pred CCeEEEE-ecCCCEEEEeecCCCCCCCCCCCC--cccceeecccCCCcEEEEEecCCeEEEEEcCCcEEEEeCCCCCCcC
Q 011775 309 GRHSAVI-TDAGALLTFGWGLYGQCGQGSTDD--ELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAFGGNQFGQLG 385 (477)
Q Consensus 309 ~~~~~~l-t~~g~vy~wG~n~~gqlG~~~~~~--~~~p~~v~~~~~~~i~~i~~G~~hs~alt~~G~vy~wG~n~~gqLG 385 (477)
.+|++++ +++|+||+||.|.+||||.+.... ...|.++. ..+|++|+||.+|++||+++|+||+||.|.+||||
T Consensus 251 ~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~---~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG 327 (423)
T 3mvd_K 251 NYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE---LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLG 327 (423)
T ss_dssp TTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC---CCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTC
T ss_pred CcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC---CCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCC
Confidence 9999999 699999999999999999965544 34555554 34899999999999999999999999999999999
Q ss_pred CCCCCC-cccceeecCCCCCCcceEEEEeCCCeEEEEECCCcEEEEECCCCCCcCCCCCCCccccEEEe---eCCCceEE
Q 011775 386 TGGDQA-ETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVFCWGWNKYGQLGLGDVIDRNIPSQVT---IEGCVPRN 461 (477)
Q Consensus 386 ~~~~~~-~~~p~~v~~~~~~~~~i~~i~~G~~hs~al~~~g~vy~wG~n~~gqLG~g~~~~~~~P~~v~---~~~~~v~~ 461 (477)
.+.... ...|+.++. +.. +|++|+||.+|++||+++|+||+||.|.+||||+++..+...|++|. +.+.+|.+
T Consensus 328 ~g~~~~~~~~p~~v~~--l~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~~~v~~ 404 (423)
T 3mvd_K 328 LGDVKDVVEKPTIVKK--LTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLL 404 (423)
T ss_dssp SSSCCSCEEEEEECTT--CCS-CEEEEEEETTEEEEEETTSCEEEEECCTTSCSSSSSSCCEEEEEECCSTTTTTCCEEE
T ss_pred CCCccccccCceEecc--CCC-CEEEEEcCCCeEEEEcCCCCEEEECCCCCCCCCCCCCCCcccCeEEeCcccCCCEEEE
Confidence 998755 347777763 444 89999999999999999999999999999999999999999999998 45778999
Q ss_pred EEecCCeeEEEEcCC
Q 011775 462 VACGWWHTLLLAVPP 476 (477)
Q Consensus 462 v~~G~~hs~~l~~~~ 476 (477)
|+||.+|+++|+++.
T Consensus 405 va~G~~ht~~l~~~~ 419 (423)
T 3mvd_K 405 ASGGGQHAIFLVKAD 419 (423)
T ss_dssp EEECSSEEEEEEECC
T ss_pred EEECCCcEEEEEccc
Confidence 999999999999873
No 4
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=5.5e-69 Score=538.96 Aligned_cols=346 Identities=33% Similarity=0.578 Sum_probs=306.7
Q ss_pred ccccceEEEEEeecC-CCCCCCCCccccceEecCCCCCCcccccccccccceEEEEecCC-cEEEecCCCCCCCccccCC
Q 011775 6 QEEKMERVVFMWGYL-PGALPQRSPILSPLVVRLPLTVGSAWRDVCGGGCGFAMAISDSR-KLITWGSTDDLGQSYVTSG 83 (477)
Q Consensus 6 ~~~~~~~~v~~WG~~-~g~lg~~~~~~~p~~~~~~~~~~~~i~~v~~g~~~~~~~lt~~G-~v~~wG~n~~~gqlg~~~~ 83 (477)
++...+++||+||.| .||||.+.....++|.+++.+...+|++|+||.. |+++|+++| +||+||.|. +||||.+..
T Consensus 29 ~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~-ht~al~~~gg~v~~wG~n~-~GqLG~g~~ 106 (406)
T 4d9s_A 29 VALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGAD-HTVAYSQSGMEVYSWGWGD-FGRLGHGNS 106 (406)
T ss_dssp EEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS-EEEEEETTTTEEEEEECCG-GGTTCSSSC
T ss_pred EEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcc-eEEEEECCCCEEEEEcCCC-CcCCCCCCC
Confidence 445689999999999 9999999877777777776665579999999986 999999886 999999996 899998877
Q ss_pred CCCCCCcccCCCCCCCEEEEecCcceEEEEecCCcEEEeeCCCCCCCCCccCCCCCCcccccchhhcccccccccccCCc
Q 011775 84 KHGEIPEPFPLPTEASIVKAAAGWAHCVAVTEGGEVYTWGWKECVPSGRVFGDLSTGTGLDKDVFERQSSFLTEQVSPRS 163 (477)
Q Consensus 84 ~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (477)
.....|.++..+...+|++|+||..|++||+++|+||+||.|.+||||...
T Consensus 107 ~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~----------------------------- 157 (406)
T 4d9s_A 107 SDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGD----------------------------- 157 (406)
T ss_dssp CCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSS-----------------------------
T ss_pred CccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCC-----------------------------
Confidence 666778888777778999999999999999999999999999999998521
Q ss_pred ccccccCCCCCCCCCCCCCcCCCceeeeehhhcccccCCCCCCcccccceEEecCCCCcEEEEEeCCCeEEEEecCCcEE
Q 011775 164 QVSRSSGGTSSGTDGRGSGEEGSKRRRISLAKQTAESSSSGDENLSAFPCLVTLNPGVRIATVAAGGRHTLALSDIGQVW 243 (477)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~i~~~~~~~i~~Ia~G~~h~~aLt~~G~vy 243 (477)
......|..+..++..+|++|+||.+|++||+++|+||
T Consensus 158 ------------------------------------------~~~~~~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~ 195 (406)
T 4d9s_A 158 ------------------------------------------TEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLY 195 (406)
T ss_dssp ------------------------------------------CCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEE
T ss_pred ------------------------------------------CCCcccceEecccCCCcEEEEecCCCeEEEEeCCCCEE
Confidence 11334677777777779999999999999999999999
Q ss_pred EEeCCCCCcccCCCCCccccCCcccCccccccCCCcccccccCccCCCCCCcccCCCcEEEEeecCCeEEEEecCCCEEE
Q 011775 244 GWGYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSEGPGFRVPGNYVKGIACGGRHSAVITDAGALLT 323 (477)
Q Consensus 244 ~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~G~~~~~~lt~~g~vy~ 323 (477)
+||.|.+||||.++... ...|.++..+. ..+|++|+||.+|+++|+++|+||+
T Consensus 196 ~wG~n~~GqlG~g~~~~-~~~p~~v~~~~--------------------------~~~i~~va~G~~ht~~l~~~G~v~~ 248 (406)
T 4d9s_A 196 GWGWGRYGNLGLGDRTD-RLVPERVTSTG--------------------------GEKMSMVACGWRHTISVSYSGALYT 248 (406)
T ss_dssp EEECCTTSTTCSSSSCC-EEEEEECCCST--------------------------TCCEEEEEECSSEEEEEETTCCEEE
T ss_pred EeeCCCCCCCCCCCCCC-cCccEEecccC--------------------------CceEEEEEECCCcEEEEcCCCCEEE
Confidence 99999999999987633 34566664333 3679999999999999999999999
Q ss_pred EeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeecCCCC
Q 011775 324 FGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAFGGNQFGQLGTGGDQAETLPRLLDAPSL 403 (477)
Q Consensus 324 wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~alt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~ 403 (477)
||.|.+||||.+.......|.++..+.+.+|++|+||.+|++||+++|+||+||.|.+||||.+.......|+.++++
T Consensus 249 wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~-- 326 (406)
T 4d9s_A 249 YGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP-- 326 (406)
T ss_dssp EECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCG--
T ss_pred eeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEecc--
Confidence 999999999999998999999999998889999999999999999999999999999999999998878889998753
Q ss_pred CCcceEEEEeCCCeEEEEECCCcEEEEECCCCCCcCCCCCCCccccEEEe
Q 011775 404 ENVHSKSVSCGARHTAVIADDGKVFCWGWNKYGQLGLGDVIDRNIPSQVT 453 (477)
Q Consensus 404 ~~~~i~~i~~G~~hs~al~~~g~vy~wG~n~~gqLG~g~~~~~~~P~~v~ 453 (477)
...+|++|+||.+|++||+++|+||+||+|.+||||+++..++..|++|+
T Consensus 327 ~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~ 376 (406)
T 4d9s_A 327 DDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIE 376 (406)
T ss_dssp GGCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECG
T ss_pred CCCcEEEEEeCCCeEEEEeCCCCEEEecCCCCCccCCCCCCCCcCCEEee
Confidence 44679999999999999999999999999999999999999999999987
No 5
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-68 Score=545.58 Aligned_cols=364 Identities=26% Similarity=0.410 Sum_probs=297.4
Q ss_pred ccceEEEEEeecC-CCCCCCCCc-----cccceEecCCCCCCcccccccccccceEEEEecCCcEEEecCCCCCCCcccc
Q 011775 8 EKMERVVFMWGYL-PGALPQRSP-----ILSPLVVRLPLTVGSAWRDVCGGGCGFAMAISDSRKLITWGSTDDLGQSYVT 81 (477)
Q Consensus 8 ~~~~~~v~~WG~~-~g~lg~~~~-----~~~p~~~~~~~~~~~~i~~v~~g~~~~~~~lt~~G~v~~wG~n~~~gqlg~~ 81 (477)
...+++||+||.| .||||.+.. ...|++++.......+|++|+||+. |+++|+++|+||+||.|. +||||.+
T Consensus 25 ~~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~-Ht~alt~~G~v~~wG~n~-~GqLG~~ 102 (473)
T 3of7_A 25 SVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGM-HTLALDEESNVWSWGCND-VGALGRD 102 (473)
T ss_dssp CSSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSS-EEEEEETTCCEEEEECCT-TSTTCSC
T ss_pred CCCCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCC-eEEEEecCCeEEEeECCC-CCCCCCC
Confidence 4578999999999 999999863 3345555544334579999999986 999999999999999996 8999987
Q ss_pred CCCC-----------------------CCCCcccC---CC---CCCCEEEEecCcceEEEEecCCcEEEeeC--CCCCCC
Q 011775 82 SGKH-----------------------GEIPEPFP---LP---TEASIVKAAAGWAHCVAVTEGGEVYTWGW--KECVPS 130 (477)
Q Consensus 82 ~~~~-----------------------~~~p~~v~---~~---~~~~i~~Ia~G~~h~~~Lt~~G~vy~wG~--n~~gql 130 (477)
.... ...|.+++ ++ ...+|++|+||..|++||+++|+||+||. +..|||
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqL 182 (473)
T 3of7_A 103 TSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGIL 182 (473)
T ss_dssp CC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEE
T ss_pred CcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCcc
Confidence 6543 23455555 32 35799999999999999999999999998 577877
Q ss_pred CCccCCCCCCcccccchhhcccccccccccCCcccccccCCCCCCCCCCCCCcCCCceeeeehhhcccccCCCCCCcccc
Q 011775 131 GRVFGDLSTGTGLDKDVFERQSSFLTEQVSPRSQVSRSSGGTSSGTDGRGSGEEGSKRRRISLAKQTAESSSSGDENLSA 210 (477)
Q Consensus 131 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (477)
|.... ......
T Consensus 183 G~~~~---------------------------------------------------------------------~~~~~~ 193 (473)
T 3of7_A 183 GFYQD---------------------------------------------------------------------KIKIQK 193 (473)
T ss_dssp ESBTT---------------------------------------------------------------------TBSCEE
T ss_pred CCCCC---------------------------------------------------------------------CCcccc
Confidence 74210 011344
Q ss_pred cceEEecCCCCcEEEEEeCCCeEEEEecCCcEEEEeCCCCCcccCCCCCcc---ccCCcccCccccccCCCcccccccCc
Q 011775 211 FPCLVTLNPGVRIATVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRM---VSSPHPIPCIESSYGKDRSAALSRGS 287 (477)
Q Consensus 211 ~P~~i~~~~~~~i~~Ia~G~~h~~aLt~~G~vy~wG~n~~gqlG~~~~~~~---~~~p~~i~~~~~~~~~~~~~~~~~~~ 287 (477)
.|.++..+...+|++|+||.+|++||+++|+||+||.|.+||||.+..... ...|.++.
T Consensus 194 ~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~------------------ 255 (473)
T 3of7_A 194 TPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFG------------------ 255 (473)
T ss_dssp EEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECS------------------
T ss_pred CcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceecC------------------
Confidence 677787777778999999999999999999999999999999998764321 22333332
Q ss_pred cCCCCCCcccCCCcEEEEeecCCeEEEEecCCCEEEEeecCCCCCCCCCCC----CcccceeecccCCCcEEEEEecCCe
Q 011775 288 VNSEGPGFRVPGNYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTD----DELSPNCVSSLLGIQIEGVAAGLWH 363 (477)
Q Consensus 288 ~~~~~~~~~~~~~~i~~I~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~----~~~~p~~v~~~~~~~i~~i~~G~~h 363 (477)
..+|++|+||.+|+++|+++|+||+||.|.+||||.+... ....|+++..+.+.+|++|+||.+|
T Consensus 256 -----------~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~G~~h 324 (473)
T 3of7_A 256 -----------LRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHH 324 (473)
T ss_dssp -----------CCSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEECSSE
T ss_pred -----------CcceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCccEEEEEeCCCe
Confidence 1459999999999999999999999999999999988754 2467899988888899999999999
Q ss_pred EEEEEcCCcEEEEeCCCCCCcCCCCCC------------C--cccceeecCCCCCCcceEEEEeCCCeEEEEECCCcEEE
Q 011775 364 TICISSDGDVYAFGGNQFGQLGTGGDQ------------A--ETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVFC 429 (477)
Q Consensus 364 s~alt~~G~vy~wG~n~~gqLG~~~~~------------~--~~~p~~v~~~~~~~~~i~~i~~G~~hs~al~~~g~vy~ 429 (477)
++||+++|+||+||.|.+||||.+... . ...|..++ .+ .+|++|+||.+|++||+++|+||+
T Consensus 325 s~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~--~~--~~v~~Ia~G~~hs~al~~~G~vy~ 400 (473)
T 3of7_A 325 SLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLN--NV--PKFKSVAAGSHHSVAVAQNGIAYS 400 (473)
T ss_dssp EEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECC--SS--CCEEEEEECSSEEEEEETTSCEEE
T ss_pred EEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccC--CC--CceEEEEeCCCeEEEEeCCCcEEE
Confidence 999999999999999999999987531 1 12344443 22 279999999999999999999999
Q ss_pred EECCCCCCcCCCC-CCCccccEEEee---CCCceEEEEecCCeeEEEEcC
Q 011775 430 WGWNKYGQLGLGD-VIDRNIPSQVTI---EGCVPRNVACGWWHTLLLAVP 475 (477)
Q Consensus 430 wG~n~~gqLG~g~-~~~~~~P~~v~~---~~~~v~~v~~G~~hs~~l~~~ 475 (477)
||.|.+||||+++ ..+...|++|+. .+.+|++|+||.+||+++.++
T Consensus 401 wG~n~~GqLG~g~~~~~~~~P~~v~~~~~~~~~v~~v~cG~~~s~~~~~~ 450 (473)
T 3of7_A 401 WGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSVSGGVK 450 (473)
T ss_dssp EECCTTCTTCCCSCCSCEEEEEECCCTTTTTEEEEEEEECSSEEEEEEEE
T ss_pred eeCCCCCCCCCCCCCccccCCeEecccccCCCeEEEEeeCCCeEEEEEec
Confidence 9999999999998 778889999983 366899999999999999875
No 6
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=7.8e-67 Score=523.33 Aligned_cols=330 Identities=34% Similarity=0.605 Sum_probs=295.6
Q ss_pred cccccccccccceEEEEecCCcEEEecCCCCCCCccccCCCCCCCCcccCCCCCCCEEEEecCcceEEEEecCC-cEEEe
Q 011775 44 SAWRDVCGGGCGFAMAISDSRKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEASIVKAAAGWAHCVAVTEGG-EVYTW 122 (477)
Q Consensus 44 ~~i~~v~~g~~~~~~~lt~~G~v~~wG~n~~~gqlg~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~Lt~~G-~vy~w 122 (477)
.+|++|++|.. |+++|+++|+||+||+|. +||||.+.......|.++......+|++|+||..|++||+++| +||+|
T Consensus 16 ~~v~~ia~G~~-hs~al~~~g~v~~wG~n~-~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~w 93 (406)
T 4d9s_A 16 RKVLIISAGAS-HSVALLSGDIVCSWGRGE-DGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSW 93 (406)
T ss_dssp CCEEEEEECSS-EEEEEETTTEEEEEECCT-TSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEE
T ss_pred cceEEEecCCC-eEEEEEeCCEEEEEeCCC-CCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEE
Confidence 78999999986 999999999999999996 8999998877777777777777779999999999999999986 99999
Q ss_pred eCCCCCCCCCccCCCCCCcccccchhhcccccccccccCCcccccccCCCCCCCCCCCCCcCCCceeeeehhhcccccCC
Q 011775 123 GWKECVPSGRVFGDLSTGTGLDKDVFERQSSFLTEQVSPRSQVSRSSGGTSSGTDGRGSGEEGSKRRRISLAKQTAESSS 202 (477)
Q Consensus 123 G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (477)
|.|.+||||...
T Consensus 94 G~n~~GqLG~g~-------------------------------------------------------------------- 105 (406)
T 4d9s_A 94 GWGDFGRLGHGN-------------------------------------------------------------------- 105 (406)
T ss_dssp ECCGGGTTCSSS--------------------------------------------------------------------
T ss_pred cCCCCcCCCCCC--------------------------------------------------------------------
Confidence 999999998521
Q ss_pred CCCCcccccceEEecCCCCcEEEEEeCCCeEEEEecCCcEEEEeCCCCCcccCCCCCccccCCcccCccccccCCCcccc
Q 011775 203 SGDENLSAFPCLVTLNPGVRIATVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAA 282 (477)
Q Consensus 203 ~~~~~~~~~P~~i~~~~~~~i~~Ia~G~~h~~aLt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~~~~~~~~ 282 (477)
......|.++..+...+|++|+||..|++||+++|+||+||.|.+||||.++.. ....|.++..+..
T Consensus 106 ---~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~-~~~~p~~v~~~~~--------- 172 (406)
T 4d9s_A 106 ---SSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTE-DSLVPQKIQAFEG--------- 172 (406)
T ss_dssp ---CCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCC-CEEEEEECGGGTT---------
T ss_pred ---CCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCC-CcccceEecccCC---------
Confidence 112346667777777799999999999999999999999999999999998763 3345666654432
Q ss_pred cccCccCCCCCCcccCCCcEEEEeecCCeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecCC
Q 011775 283 LSRGSVNSEGPGFRVPGNYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLW 362 (477)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~i~~I~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~ 362 (477)
.+|++|+||.+|+++|+++|+||+||.|.+||||.+.......|.++..+...+|++|+||.+
T Consensus 173 -----------------~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ 235 (406)
T 4d9s_A 173 -----------------IRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWR 235 (406)
T ss_dssp -----------------CCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSS
T ss_pred -----------------CcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCC
Confidence 679999999999999999999999999999999999998899999999888889999999999
Q ss_pred eEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeecCCCCCCcceEEEEeCCCeEEEEECCCcEEEEECCCCCCcCCCC
Q 011775 363 HTICISSDGDVYAFGGNQFGQLGTGGDQAETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVFCWGWNKYGQLGLGD 442 (477)
Q Consensus 363 hs~alt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~al~~~g~vy~wG~n~~gqLG~g~ 442 (477)
|+++|+++|+||+||.|.+||||.+.......|+.++ .+.+.+|++|+||.+|++||+++|+||+||.|.+||||.+.
T Consensus 236 ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~--~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~ 313 (406)
T 4d9s_A 236 HTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLE--ALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGN 313 (406)
T ss_dssp EEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECG--GGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSS
T ss_pred cEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEec--ccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCC
Confidence 9999999999999999999999999887788898887 46677899999999999999999999999999999999999
Q ss_pred CCCccccEEEeeC-CCceEEEEecCCeeEEEEcC
Q 011775 443 VIDRNIPSQVTIE-GCVPRNVACGWWHTLLLAVP 475 (477)
Q Consensus 443 ~~~~~~P~~v~~~-~~~v~~v~~G~~hs~~l~~~ 475 (477)
..+...|+++.++ ..+|++|+||..|++||+++
T Consensus 314 ~~~~~~p~~v~~~~~~~v~~va~G~~hs~alt~~ 347 (406)
T 4d9s_A 314 NLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTER 347 (406)
T ss_dssp SSCEEEEEEECCGGGCCEEEEEECSSEEEEEETT
T ss_pred CCCCccCEEEeccCCCcEEEEEeCCCeEEEEeCC
Confidence 9899999999865 56899999999999999986
No 7
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=4.1e-63 Score=493.80 Aligned_cols=320 Identities=30% Similarity=0.528 Sum_probs=273.1
Q ss_pred ceEEEEecCCcEEEecCCCCCCCccccCCCCCCCCcccCCCCCCCEEEEecCcceEEEEecCCcEEEeeCCCCCCCCCcc
Q 011775 55 GFAMAISDSRKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEASIVKAAAGWAHCVAVTEGGEVYTWGWKECVPSGRVF 134 (477)
Q Consensus 55 ~~~~~lt~~G~v~~wG~n~~~gqlg~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~ 134 (477)
.+.++|++||+||+||+|. .||||.+.......|.++..+...+|++|+||..|+++|+++|+||+||.|.+||||...
T Consensus 11 ~~~~~l~~~G~v~~wG~n~-~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~ 89 (389)
T 3kci_A 11 RENLYFQGSGTIYGWGHNH-RGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGG 89 (389)
T ss_dssp ----------CEEEEEECT-TSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSS
T ss_pred ccceeECCCCeEEEeeCCC-CccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCC
Confidence 3788999999999999996 899998777777788888777777999999999999999999999999999999998521
Q ss_pred CCCCCCcccccchhhcccccccccccCCcccccccCCCCCCCCCCCCCcCCCceeeeehhhcccccCCCCCCcccccceE
Q 011775 135 GDLSTGTGLDKDVFERQSSFLTEQVSPRSQVSRSSGGTSSGTDGRGSGEEGSKRRRISLAKQTAESSSSGDENLSAFPCL 214 (477)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 214 (477)
. .....|.+
T Consensus 90 ~-----------------------------------------------------------------------~~~~~p~~ 98 (389)
T 3kci_A 90 T-----------------------------------------------------------------------ESVSTPTL 98 (389)
T ss_dssp S-----------------------------------------------------------------------CCEEEEEE
T ss_pred c-----------------------------------------------------------------------CCccCCEE
Confidence 1 12235555
Q ss_pred EecCCCC--cEEEEEeCCCeEEEEecCCcEEEEeCCCCCcccCCCCCccccCCcccCccccccCCCcccccccCccCCCC
Q 011775 215 VTLNPGV--RIATVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSEG 292 (477)
Q Consensus 215 i~~~~~~--~i~~Ia~G~~h~~aLt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~ 292 (477)
++.+... ++++|+||.+|++||+++|+||+||.|.+||||.++.. ....|.+++.+.
T Consensus 99 v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~-~~~~p~~v~~l~-------------------- 157 (389)
T 3kci_A 99 LESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRS-PCDRPRVIESLR-------------------- 157 (389)
T ss_dssp CGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCC-CEEEEEECGGGT--------------------
T ss_pred cccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCc-cCcCCeEecccC--------------------
Confidence 5554433 56889999999999999999999999999999998763 335566665443
Q ss_pred CCcccCCCcEEEEeecCCeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecC--CeEEEEEcC
Q 011775 293 PGFRVPGNYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGL--WHTICISSD 370 (477)
Q Consensus 293 ~~~~~~~~~i~~I~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~hs~alt~~ 370 (477)
+.+|++|+||.+|+++|+++|+||+||.|.+||||.+.......|.++..+.+.+|++|+||. .|+++|+++
T Consensus 158 ------~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~ 231 (389)
T 3kci_A 158 ------GIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDD 231 (389)
T ss_dssp ------TSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETT
T ss_pred ------CCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccC
Confidence 367999999999999999999999999999999999999999999999999888999999995 899999999
Q ss_pred CcEEEEeCCCCCCcCCCCCCCcccceeecCCCCCCcceEEEEeCCCeEEEEECCCcEEEEECCCCCCcCCCCCCCccccE
Q 011775 371 GDVYAFGGNQFGQLGTGGDQAETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVFCWGWNKYGQLGLGDVIDRNIPS 450 (477)
Q Consensus 371 G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~al~~~g~vy~wG~n~~gqLG~g~~~~~~~P~ 450 (477)
|+||+||.|.+||||.+.......|+.++ .+.+.+|++|+||.+|++||+++|+||+||.|.+||||.+.......|+
T Consensus 232 G~v~~wG~n~~GqLG~g~~~~~~~p~~v~--~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~ 309 (389)
T 3kci_A 232 DTVWSWGDGDYGKLGRGGSDGCKVPMKID--SLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPR 309 (389)
T ss_dssp TEEEEEECCGGGTTSSSSCCCEEEEEECG--GGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEE
T ss_pred CEEEEEeCCCCCCCCCCCCCCccccEEec--ccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCe
Confidence 99999999999999999887777888887 4667789999999999999999999999999999999999988889999
Q ss_pred EEe-eCCCceEEEEecCCeeEEEEcC
Q 011775 451 QVT-IEGCVPRNVACGWWHTLLLAVP 475 (477)
Q Consensus 451 ~v~-~~~~~v~~v~~G~~hs~~l~~~ 475 (477)
+|+ +.+.+|++|+||.+|++||+++
T Consensus 310 ~v~~l~~~~v~~ia~G~~h~~al~~~ 335 (389)
T 3kci_A 310 QVQGLQGKKVIAIATGSLHCVCCTED 335 (389)
T ss_dssp ECGGGTTCCEEEEEECSSEEEEEETT
T ss_pred EeccCCCCCEEEEEeccCeEEEECCC
Confidence 998 4567899999999999999986
No 8
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=1.6e-61 Score=486.52 Aligned_cols=316 Identities=29% Similarity=0.468 Sum_probs=265.4
Q ss_pred ceEEEEecCCcEEEecCCCCCCCccccCCCC-CCCCcccCCCCCCCEEEEecCcceEEEEecCCcEEEeeCCCCCCCCCc
Q 011775 55 GFAMAISDSRKLITWGSTDDLGQSYVTSGKH-GEIPEPFPLPTEASIVKAAAGWAHCVAVTEGGEVYTWGWKECVPSGRV 133 (477)
Q Consensus 55 ~~~~~lt~~G~v~~wG~n~~~gqlg~~~~~~-~~~p~~v~~~~~~~i~~Ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~ 133 (477)
.|+++|+++|+||+||.|. +||||.+.... ...|.++..+ .+|++|+||..|+++|+++|+||+||.|.+||||..
T Consensus 18 ~h~~~l~~~g~v~~wG~n~-~GqLG~g~~~~~~~~P~~v~~~--~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~ 94 (413)
T 1a12_A 18 SHRSHSTEPGLVLTLGQGD-VGQLGLGENVMERKKPALVSIP--EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRD 94 (413)
T ss_dssp CCTTCCCCCBEEEEEEECT-TSTTCSCTTCCEEEEEEEECCS--SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSC
T ss_pred ccceeecCCCcEEEEECCC-CCcCCCCCCccccccceEccCC--CCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCC
Confidence 4999999999999999996 89999876543 3456666544 689999999999999999999999999999999853
Q ss_pred cCCCCCCcccccchhhcccccccccccCCcccccccCCCCCCCCCCCCCcCCCceeeeehhhcccccCCCCCCcccccce
Q 011775 134 FGDLSTGTGLDKDVFERQSSFLTEQVSPRSQVSRSSGGTSSGTDGRGSGEEGSKRRRISLAKQTAESSSSGDENLSAFPC 213 (477)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 213 (477)
... ......|.
T Consensus 95 ~~~---------------------------------------------------------------------~~~~~~P~ 105 (413)
T 1a12_A 95 TSV---------------------------------------------------------------------EGSEMVPG 105 (413)
T ss_dssp CCS---------------------------------------------------------------------TTGGGSCE
T ss_pred CCC---------------------------------------------------------------------CccccCCe
Confidence 110 01234677
Q ss_pred EEecCCCCcEEEEEeCCCeEEEEecCCcEEEEeC--CCCCcccCCCCCccccCCcccCccccccCCCcccccccCccCCC
Q 011775 214 LVTLNPGVRIATVAAGGRHTLALSDIGQVWGWGY--GGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSE 291 (477)
Q Consensus 214 ~i~~~~~~~i~~Ia~G~~h~~aLt~~G~vy~wG~--n~~gqlG~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~ 291 (477)
+|.++ .+|++|+||.+|++||+++|+||+||. |.+||||.++.......|.++..
T Consensus 106 ~v~l~--~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v~~--------------------- 162 (413)
T 1a12_A 106 KVELQ--EKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQL--------------------- 162 (413)
T ss_dssp ECCCC--SCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECC---------------------
T ss_pred EecCC--CcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEecC---------------------
Confidence 77543 389999999999999999999999999 99999999876544444655521
Q ss_pred CCCcccCCCcEEEEeecCCeEEEEecCCCEEEEeecCCCCCCCCCCCC-----------cccceeeccc-----CCCcEE
Q 011775 292 GPGFRVPGNYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDD-----------ELSPNCVSSL-----LGIQIE 355 (477)
Q Consensus 292 ~~~~~~~~~~i~~I~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~-----------~~~p~~v~~~-----~~~~i~ 355 (477)
..+|++|+||.+|+++|+++|+||+||.|.+||||.+.... ...|.++... ...+|+
T Consensus 163 -------~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~ 235 (413)
T 1a12_A 163 -------DVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQ 235 (413)
T ss_dssp -------SSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEE
T ss_pred -------CCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEE
Confidence 24699999999999999999999999999999999875321 2467666543 346899
Q ss_pred EEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeecCCCCCC--cceEEEEeCCCeEEEEECCCcEEEEECC
Q 011775 356 GVAAGLWHTICISSDGDVYAFGGNQFGQLGTGGDQAETLPRLLDAPSLEN--VHSKSVSCGARHTAVIADDGKVFCWGWN 433 (477)
Q Consensus 356 ~i~~G~~hs~alt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~--~~i~~i~~G~~hs~al~~~g~vy~wG~n 433 (477)
+|+||.+|++||+++|+||+||.|.+||||.+.......|+.++. +.+ .+|++|+||.+|++||+++|+||+||.|
T Consensus 236 ~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~--l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n 313 (413)
T 1a12_A 236 DAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTS--FKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRA 313 (413)
T ss_dssp EEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGG--GCCTTCCEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred EEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchh--ccCCCceEEEEecccceEEEEeCCCCEEEeeCC
Confidence 999999999999999999999999999999998877778888874 444 6799999999999999999999999999
Q ss_pred CCCCcCCC-CCCCccccEEEeeCCCceEEEEecCCeeEEEEcC
Q 011775 434 KYGQLGLG-DVIDRNIPSQVTIEGCVPRNVACGWWHTLLLAVP 475 (477)
Q Consensus 434 ~~gqLG~g-~~~~~~~P~~v~~~~~~v~~v~~G~~hs~~l~~~ 475 (477)
.+||||++ +......|++|+... +|++|+||.+|++||+++
T Consensus 314 ~~GqLG~g~~~~~~~~P~~v~~l~-~v~~v~~G~~hs~alt~~ 355 (413)
T 1a12_A 314 EYGRLGLGEGAEEKSIPTLISRLP-AVSSVACGASVGYAVTKD 355 (413)
T ss_dssp GGGTTCSCTTCCCEEEEEECCSSS-SEEEEEECSSEEEEEETT
T ss_pred CCCccCCCCCCccccCCEEecccC-ceeEEEECcceEEEEeCC
Confidence 99999999 556678899988554 899999999999999986
No 9
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=1.2e-60 Score=481.95 Aligned_cols=323 Identities=24% Similarity=0.337 Sum_probs=264.0
Q ss_pred cccccccccccceEEEEecCCcEEEecCCCCCCCccccCC-CCCCCCcccCCCCCCCEEEEecCcceEEEEecCCcEEEe
Q 011775 44 SAWRDVCGGGCGFAMAISDSRKLITWGSTDDLGQSYVTSG-KHGEIPEPFPLPTEASIVKAAAGWAHCVAVTEGGEVYTW 122 (477)
Q Consensus 44 ~~i~~v~~g~~~~~~~lt~~G~v~~wG~n~~~gqlg~~~~-~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~Lt~~G~vy~w 122 (477)
.++++|++|.. |+++|+++|+||+||.|. +||||.+.. .....|.+++. ..+|++|+||..|+++|+++|+||+|
T Consensus 24 ~~~~~ia~g~~-~~~~l~~~G~v~~wG~n~-~GqLG~g~~~~~~~~p~~v~~--l~~v~~va~G~~h~~~l~~~G~v~~w 99 (423)
T 3mvd_K 24 AKRARIAFHLE-LPKRRTVLGNVLVCGNGD-VGQLGLGEDILERKRLSPVAG--IPDAVDISAGGMHNLVLTKSGDIYSF 99 (423)
T ss_dssp -----CCCCCC-CCCCCCCCEEEEEEEECT-TSTTCSCSSCCEEEEEEECCS--CSSEEEEEECSSEEEEEETTSCEEEE
T ss_pred ceeeEEecCCc-cceeecCCCcEEEEeCCC-CCCCCCCCCCccCcCCeEccC--CCCceEEeeCCCeEEEEeCCCeEEEe
Confidence 67788999875 999999999999999996 899998753 22334555544 34799999999999999999999999
Q ss_pred eCCCCCCCCCccCCCCCCcccccchhhcccccccccccCCcccccccCCCCCCCCCCCCCcCCCceeeeehhhcccccCC
Q 011775 123 GWKECVPSGRVFGDLSTGTGLDKDVFERQSSFLTEQVSPRSQVSRSSGGTSSGTDGRGSGEEGSKRRRISLAKQTAESSS 202 (477)
Q Consensus 123 G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (477)
|.|.+||||.....
T Consensus 100 G~n~~GqLG~~~~~------------------------------------------------------------------ 113 (423)
T 3mvd_K 100 GCNDEGALGRDTSE------------------------------------------------------------------ 113 (423)
T ss_dssp ECCSSSTTCSCCCS------------------------------------------------------------------
T ss_pred ECCCCcCCCCCCcC------------------------------------------------------------------
Confidence 99999999853111
Q ss_pred CCCCcccccceEEecCCCCcEEEEEeCCCeEEEEecCCcEEEEeC--CCCCcccCCCCCccccCCcccCccccccCCCcc
Q 011775 203 SGDENLSAFPCLVTLNPGVRIATVAAGGRHTLALSDIGQVWGWGY--GGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRS 280 (477)
Q Consensus 203 ~~~~~~~~~P~~i~~~~~~~i~~Ia~G~~h~~aLt~~G~vy~wG~--n~~gqlG~~~~~~~~~~p~~i~~~~~~~~~~~~ 280 (477)
......|.++..+. +|++|+||.+|++||+++|+||+||. |.+||||.+.... ...|.++ +
T Consensus 114 ---~~~~~~P~~v~~~~--~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~-~~~p~~~--~--------- 176 (423)
T 3mvd_K 114 ---DGSESKPDLIDLPG--KALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGN-KRTPIDL--M--------- 176 (423)
T ss_dssp ---TTSSSSCEECCCSS--CEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBC-EEEEEES--S---------
T ss_pred ---CccccCCeEEcCCC--CEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCC-CceeeEe--c---------
Confidence 01234676666543 89999999999999999999999999 9999999876532 2233322 2
Q ss_pred cccccCccCCCCCCcccCCCcEEEEeecCCeEEEEecCCCEEEEeecCCCCCCCCCCC-----------Ccccceeeccc
Q 011775 281 AALSRGSVNSEGPGFRVPGNYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTD-----------DELSPNCVSSL 349 (477)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~i~~I~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~-----------~~~~p~~v~~~ 349 (477)
...+|++|+||.+|+++|+++|+||+||.|.+||||.+... ....|.++..+
T Consensus 177 -----------------~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~ 239 (423)
T 3mvd_K 177 -----------------EGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIIT 239 (423)
T ss_dssp -----------------TTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCT
T ss_pred -----------------CCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeec
Confidence 22569999999999999999999999999999999987643 45688888887
Q ss_pred CCCcEEEEEecCCeEEEE-EcCCcEEEEeCCCCCCcCCCCCCCcc--cceeecCCCCCCcceEEEEeCCCeEEEEECCCc
Q 011775 350 LGIQIEGVAAGLWHTICI-SSDGDVYAFGGNQFGQLGTGGDQAET--LPRLLDAPSLENVHSKSVSCGARHTAVIADDGK 426 (477)
Q Consensus 350 ~~~~i~~i~~G~~hs~al-t~~G~vy~wG~n~~gqLG~~~~~~~~--~p~~v~~~~~~~~~i~~i~~G~~hs~al~~~g~ 426 (477)
...+|++|+||.+|++++ +++|+||+||.|.+||||.+...... .|..+. ..+|++|+||.+|++||+++|+
T Consensus 240 ~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~-----~~~v~~ia~G~~ht~alt~~G~ 314 (423)
T 3mvd_K 240 RAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE-----LKDIRHIAGGQHHTVILTTDLK 314 (423)
T ss_dssp TCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC-----CCSEEEEEECSSEEEEEETTCC
T ss_pred CCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC-----CCCeEEEEcccCeEEEEeCCCc
Confidence 778999999999999999 68999999999999999996654443 444443 2479999999999999999999
Q ss_pred EEEEECCCCCCcCCCCCCC-ccccEEEeeCCCceEEEEecCCeeEEEEcC
Q 011775 427 VFCWGWNKYGQLGLGDVID-RNIPSQVTIEGCVPRNVACGWWHTLLLAVP 475 (477)
Q Consensus 427 vy~wG~n~~gqLG~g~~~~-~~~P~~v~~~~~~v~~v~~G~~hs~~l~~~ 475 (477)
||+||.|.+||||.+...+ ...|++++....+|++|+||.+|++||+++
T Consensus 315 v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~hs~alt~~ 364 (423)
T 3mvd_K 315 CSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVCSYAVTID 364 (423)
T ss_dssp EEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETTEEEEEETT
T ss_pred EEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCCeEEEEcCC
Confidence 9999999999999998766 467888885544899999999999999986
No 10
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-59 Score=479.03 Aligned_cols=351 Identities=22% Similarity=0.380 Sum_probs=266.4
Q ss_pred cccccccccccceEEEEecCCcEEEecCCCCCCCccccCCC---CCCCCcccCCC--CCCCEEEEecCcceEEEEecCCc
Q 011775 44 SAWRDVCGGGCGFAMAISDSRKLITWGSTDDLGQSYVTSGK---HGEIPEPFPLP--TEASIVKAAAGWAHCVAVTEGGE 118 (477)
Q Consensus 44 ~~i~~v~~g~~~~~~~lt~~G~v~~wG~n~~~gqlg~~~~~---~~~~p~~v~~~--~~~~i~~Ia~G~~h~~~Lt~~G~ 118 (477)
..|+...+ ++.|+++++++|+||+||.|. +||||.+... ....|++++.. ...+|++|+||..|++||+++|+
T Consensus 10 ~~~~~~~~-~~~h~~~~~~~g~v~~wG~n~-~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~ 87 (473)
T 3of7_A 10 SHIINAQE-DYKHMYLSVQPLDIFCWGTGS-MCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESN 87 (473)
T ss_dssp TTCCCCGG-GGHHHHCCSSCCEEEEEEECT-TSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCC
T ss_pred hhhhhhcc-cccccccCCCCccEEEEcCCC-CCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEecCCe
Confidence 34445554 477999999999999999996 8999988743 33455555544 55789999999999999999999
Q ss_pred EEEeeCCCCCCCCCccCCCCCCcccccchhhcccccccccccCCcccccccCCCCCCCCCCCCCcCCCceeeeehhhccc
Q 011775 119 VYTWGWKECVPSGRVFGDLSTGTGLDKDVFERQSSFLTEQVSPRSQVSRSSGGTSSGTDGRGSGEEGSKRRRISLAKQTA 198 (477)
Q Consensus 119 vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (477)
||+||.|++||||....... . ..+.+......
T Consensus 88 v~~wG~n~~GqLG~~~~~~~-------~----------------------------------------~~~~~~~~~~~- 119 (473)
T 3of7_A 88 VWSWGCNDVGALGRDTSNAK-------E----------------------------------------QLKDMDADDSS- 119 (473)
T ss_dssp EEEEECCTTSTTCSCCC---------------------------------------------------------------
T ss_pred EEEeECCCCCCCCCCCcccc-------c----------------------------------------ccccccccccC-
Confidence 99999999999996422100 0 00000000000
Q ss_pred ccCCCCCCcccccceEEec--C----CCCcEEEEEeCCCeEEEEecCCcEEEEeC--CCCCcccCCCC-CccccCCcccC
Q 011775 199 ESSSSGDENLSAFPCLVTL--N----PGVRIATVAAGGRHTLALSDIGQVWGWGY--GGEGQLGLGSR-IRMVSSPHPIP 269 (477)
Q Consensus 199 ~~~~~~~~~~~~~P~~i~~--~----~~~~i~~Ia~G~~h~~aLt~~G~vy~wG~--n~~gqlG~~~~-~~~~~~p~~i~ 269 (477)
+............|.+|.. + +..+|++|+||.+|++||+++|+||+||. |..||||.... ......|.+++
T Consensus 120 ~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~ 199 (473)
T 3of7_A 120 DDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVP 199 (473)
T ss_dssp ------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECC
T ss_pred ccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEcc
Confidence 0000001113457777764 3 35699999999999999999999999998 68899998543 33445676665
Q ss_pred ccccccCCCcccccccCccCCCCCCcccCCCcEEEEeecCCeEEEEecCCCEEEEeecCCCCCCCCCCCC----ccccee
Q 011775 270 CIESSYGKDRSAALSRGSVNSEGPGFRVPGNYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDD----ELSPNC 345 (477)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~----~~~p~~ 345 (477)
.+.. .+|++|+||.+|+++|+++|+||+||.|.+||||.+.... ...|.+
T Consensus 200 ~l~~--------------------------~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~ 253 (473)
T 3of7_A 200 TFSK--------------------------YNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRP 253 (473)
T ss_dssp CCCS--------------------------SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEE
T ss_pred ccCC--------------------------CCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCcee
Confidence 4433 6799999999999999999999999999999999986543 446666
Q ss_pred ecccCCCcEEEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCC----cccceeecCCCCCCcceEEEEeCCCeEEEE
Q 011775 346 VSSLLGIQIEGVAAGLWHTICISSDGDVYAFGGNQFGQLGTGGDQA----ETLPRLLDAPSLENVHSKSVSCGARHTAVI 421 (477)
Q Consensus 346 v~~~~~~~i~~i~~G~~hs~alt~~G~vy~wG~n~~gqLG~~~~~~----~~~p~~v~~~~~~~~~i~~i~~G~~hs~al 421 (477)
+.. .+|++|+||.+|++||+++|+||+||.|.+||||.+.... ...|+.+. .+.+.+|++|+||.+|++||
T Consensus 254 ~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~--~~~~~~i~~ia~G~~hs~~l 328 (473)
T 3of7_A 254 FGL---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLA--LPDNVVIRSIAAGEHHSLIL 328 (473)
T ss_dssp CSC---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECC--CCTTCCEEEEEECSSEEEEE
T ss_pred cCC---cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeecccccc--ccCCccEEEEEeCCCeEEEE
Confidence 543 4899999999999999999999999999999999987642 24677776 45667899999999999999
Q ss_pred ECCCcEEEEECCCCCCcCCCCCC------------CccccEEEeeCCC-ceEEEEecCCeeEEEEcC
Q 011775 422 ADDGKVFCWGWNKYGQLGLGDVI------------DRNIPSQVTIEGC-VPRNVACGWWHTLLLAVP 475 (477)
Q Consensus 422 ~~~g~vy~wG~n~~gqLG~g~~~------------~~~~P~~v~~~~~-~v~~v~~G~~hs~~l~~~ 475 (477)
+++|+||+||.|.+||||++... ....|.+..+++. +|++|+||.+|++||+++
T Consensus 329 t~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~v~~Ia~G~~hs~al~~~ 395 (473)
T 3of7_A 329 SQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQN 395 (473)
T ss_dssp ETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSCCEEEEEECSSEEEEEETT
T ss_pred eCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCCceEEEEeCCCeEEEEeCC
Confidence 99999999999999999987531 1122333333333 899999999999999976
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=2e-56 Score=424.35 Aligned_cols=270 Identities=24% Similarity=0.399 Sum_probs=224.4
Q ss_pred EEEEEeecC-CCCCCCCCccccceEecCCCCCCcccccccccccceEEEEecCCcEEEecCCCCCCCccccCCCCCCCCc
Q 011775 12 RVVFMWGYL-PGALPQRSPILSPLVVRLPLTVGSAWRDVCGGGCGFAMAISDSRKLITWGSTDDLGQSYVTSGKHGEIPE 90 (477)
Q Consensus 12 ~~v~~WG~~-~g~lg~~~~~~~p~~~~~~~~~~~~i~~v~~g~~~~~~~lt~~G~v~~wG~n~~~gqlg~~~~~~~~~p~ 90 (477)
.+||+||.| ..++ .+.|+... .+|++|++|.. |+++|+ +|+||+||.|. +||||. |.
T Consensus 2 ~~v~~WG~n~~~~~-------~~~p~~~~----~~i~~ia~G~~-h~~~l~-~G~v~~wG~n~-~Gqlg~--------p~ 59 (282)
T 3qhy_B 2 TSVVAWGGNNDWGE-------ATVPAEAQ----SGVDAIAGGYF-HGLALK-GGKVLGWGANL-NGQLTM--------PA 59 (282)
T ss_dssp CEEEEECSCCTTST-------TCCCGGGS----SSCCEEEECSS-EEEEEE-TTEEEEEECCS-SSTTSC--------CG
T ss_pred eEEEEeCCCCCcCc-------ccCCcccc----CCCcEEEeCCC-eEEEEE-CCEEEEEeCCC-CCCCCC--------Cc
Confidence 469999987 3333 23344444 68999999986 999998 99999999996 899983 22
Q ss_pred ccCCCCCCCEEEEecCcceEEEEecCCcEEEeeCCCCCCCCCccCCCCCCcccccchhhcccccccccccCCcccccccC
Q 011775 91 PFPLPTEASIVKAAAGWAHCVAVTEGGEVYTWGWKECVPSGRVFGDLSTGTGLDKDVFERQSSFLTEQVSPRSQVSRSSG 170 (477)
Q Consensus 91 ~v~~~~~~~i~~Ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (477)
+ ...+|++|+||..|+++|+ ||+||+||.|.+||||.
T Consensus 60 ~----~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~-------------------------------------- 96 (282)
T 3qhy_B 60 A----TQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV-------------------------------------- 96 (282)
T ss_dssp G----GGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC--------------------------------------
T ss_pred c----CCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC--------------------------------------
Confidence 2 2348999999999999996 99999999999998872
Q ss_pred CCCCCCCCCCCCcCCCceeeeehhhcccccCCCCCCcccccceEEecCCCCcEEEEEeCCCeEEEEecCCcEEEEeCCCC
Q 011775 171 GTSSGTDGRGSGEEGSKRRRISLAKQTAESSSSGDENLSAFPCLVTLNPGVRIATVAAGGRHTLALSDIGQVWGWGYGGE 250 (477)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~i~~~~~~~i~~Ia~G~~h~~aLt~~G~vy~wG~n~~ 250 (477)
|..+ ..+|++|+||.+|+++|+ +|+||+||.|.+
T Consensus 97 -----------------------------------------P~~~----~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~ 130 (282)
T 3qhy_B 97 -----------------------------------------PAEA----RSGVDAIAAGAWASYALK-DGKVIAWGDDSD 130 (282)
T ss_dssp -----------------------------------------CGGG----SSSEEEEEEETTEEEEEE-TTEEEEEECCTT
T ss_pred -----------------------------------------Cccc----CCCeEEEECcCCEEEEEe-CCeEEEecCCCC
Confidence 2111 127999999999999999 999999999999
Q ss_pred CcccCCCCCccccCCcccCccccccCCCcccccccCccCCCCCCcccCCCcEEEEeecCCeEEEEecCCCEEEEeecCCC
Q 011775 251 GQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSEGPGFRVPGNYVKGIACGGRHSAVITDAGALLTFGWGLYG 330 (477)
Q Consensus 251 gqlG~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~G~~~~~~lt~~g~vy~wG~n~~g 330 (477)
||||.. .+. . .+|++|+||.+|+++|+ +|+||+||.|.+|
T Consensus 131 gqlg~~---------~~~--~----------------------------~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~g 170 (282)
T 3qhy_B 131 GQTTVP---------AEA--Q----------------------------SGVTALDGGVYTALAVK-NGGVIAWGDNYFG 170 (282)
T ss_dssp STTSCC---------GGG--G----------------------------SSEEEEEECSSEEEEEE-TTEEEEEECCTTS
T ss_pred CcCCCC---------ccC--C----------------------------CCeEEEEcccCEEEEEE-CCEEEEecCCCCC
Confidence 999742 111 1 34999999999999999 8999999999999
Q ss_pred CCCCCCCCCcccceeecccCCCcEEEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeecCCCCCCcceEE
Q 011775 331 QCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAFGGNQFGQLGTGGDQAETLPRLLDAPSLENVHSKS 410 (477)
Q Consensus 331 qlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~alt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~~i~~ 410 (477)
|||. |.++ ..+|++|+||.+|+++| ++|+||+||.|.+||||.+.. . + .+|++
T Consensus 171 qlg~--------p~~~----~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~~--------~----~--~~v~~ 223 (282)
T 3qhy_B 171 QTTV--------PAEA----QSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPTE--------A----L--SGVSA 223 (282)
T ss_dssp TTSC--------CGGG----GSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGG--------G----G--SSCCE
T ss_pred CCCC--------ceec----CCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCcc--------c----C--CCceE
Confidence 9983 2222 34899999999999999 899999999999999985321 1 1 35999
Q ss_pred EEeCCCeEEEEECCCcEEEEECCCCCCcCCCCCCCccccEEEeeCCCceEEEEecCCeeEEEEcC
Q 011775 411 VSCGARHTAVIADDGKVFCWGWNKYGQLGLGDVIDRNIPSQVTIEGCVPRNVACGWWHTLLLAVP 475 (477)
Q Consensus 411 i~~G~~hs~al~~~g~vy~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~v~~v~~G~~hs~~l~~~ 475 (477)
|+||..|+++|+ +|+||+||.|.++|++.. ..|++|+||..|++||+++
T Consensus 224 i~~G~~h~~al~-~g~v~~wG~n~~gq~~v~---------------~~v~~iaaG~~h~~al~~~ 272 (282)
T 3qhy_B 224 IASGEWYSLALK-NGKVIAWGSSRTAPSSVQ---------------SGVSSIEAGPNAAYALKGG 272 (282)
T ss_dssp EEECSSCEEEEE-TTEEEEESTTCCCCGGGS---------------SCEEEEEECSSCEEEEEC-
T ss_pred EEcCCCEEEEEE-CCEEEEecCCCCccccCC---------------CCcEEEEECcCeEEEEecC
Confidence 999999999999 999999999999999751 2689999999999999987
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=1.9e-48 Score=369.57 Aligned_cols=234 Identities=28% Similarity=0.480 Sum_probs=192.9
Q ss_pred CcEEEecCCCCCCCccccCCCCCCCCcccCCCCCCCEEEEecCcceEEEEecCCcEEEeeCCCCCCCCCccCCCCCCccc
Q 011775 64 RKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEASIVKAAAGWAHCVAVTEGGEVYTWGWKECVPSGRVFGDLSTGTGL 143 (477)
Q Consensus 64 G~v~~wG~n~~~gqlg~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~ 143 (477)
.+||+||+|.++++. +.|+ +...+|++|+||..|+++|+ +|+||+||.|.+||||.
T Consensus 2 ~~v~~WG~n~~~~~~----------~~p~--~~~~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~----------- 57 (282)
T 3qhy_B 2 TSVVAWGGNNDWGEA----------TVPA--EAQSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTM----------- 57 (282)
T ss_dssp CEEEEECSCCTTSTT----------CCCG--GGSSSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSC-----------
T ss_pred eEEEEeCCCCCcCcc----------cCCc--cccCCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCC-----------
Confidence 369999998643331 2222 23348999999999999998 99999999999998872
Q ss_pred ccchhhcccccccccccCCcccccccCCCCCCCCCCCCCcCCCceeeeehhhcccccCCCCCCcccccceEEecCCCCcE
Q 011775 144 DKDVFERQSSFLTEQVSPRSQVSRSSGGTSSGTDGRGSGEEGSKRRRISLAKQTAESSSSGDENLSAFPCLVTLNPGVRI 223 (477)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~i~~~~~~~i 223 (477)
|.. . ..+|
T Consensus 58 --------------------------------------------------------------------p~~--~--~~~i 65 (282)
T 3qhy_B 58 --------------------------------------------------------------------PAA--T--QSGV 65 (282)
T ss_dssp --------------------------------------------------------------------CGG--G--GSCC
T ss_pred --------------------------------------------------------------------Ccc--C--CCCE
Confidence 100 0 1279
Q ss_pred EEEEeCCCeEEEEecCCcEEEEeCCCCCcccCCCCCccccCCcccCccccccCCCcccccccCccCCCCCCcccCCCcEE
Q 011775 224 ATVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSEGPGFRVPGNYVK 303 (477)
Q Consensus 224 ~~Ia~G~~h~~aLt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 303 (477)
++|+||.+|+++|+ +|+||+||.|.+||||. |.++. .+|+
T Consensus 66 ~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~---------P~~~~------------------------------~~v~ 105 (282)
T 3qhy_B 66 DAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV---------PAEAR------------------------------SGVD 105 (282)
T ss_dssp CEEEECSSEEEEEE-TTEEEEEECCTTSTTCC---------CGGGS------------------------------SSEE
T ss_pred EEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC---------CcccC------------------------------CCeE
Confidence 99999999999996 99999999999999985 33331 3599
Q ss_pred EEeecCCeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecCCeEEEEEcCCcEEEEeCCCCCC
Q 011775 304 GIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAFGGNQFGQ 383 (477)
Q Consensus 304 ~I~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~alt~~G~vy~wG~n~~gq 383 (477)
+|+||.+|+++|+ +|+||+||.|.+||||.. . ....+|++|+||.+|+++|+ +|+||+||.|.+||
T Consensus 106 ~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~--------~----~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gq 171 (282)
T 3qhy_B 106 AIAAGAWASYALK-DGKVIAWGDDSDGQTTVP--------A----EAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQ 171 (282)
T ss_dssp EEEEETTEEEEEE-TTEEEEEECCTTSTTSCC--------G----GGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTST
T ss_pred EEECcCCEEEEEe-CCeEEEecCCCCCcCCCC--------c----cCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCC
Confidence 9999999999999 999999999999999742 1 12247999999999999999 89999999999999
Q ss_pred cCCCCCCCcccceeecCCCCCCcceEEEEeCCCeEEEEECCCcEEEEECCCCCCcCCCCCCCccccEEEeeCCCceEEEE
Q 011775 384 LGTGGDQAETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVFCWGWNKYGQLGLGDVIDRNIPSQVTIEGCVPRNVA 463 (477)
Q Consensus 384 LG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~al~~~g~vy~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~v~~v~ 463 (477)
||. |..+ ..+|++|+||.+|+++| ++|+||+||.|.+||||.+... ..+|++|+
T Consensus 172 lg~--------p~~~------~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~~~-----------~~~v~~i~ 225 (282)
T 3qhy_B 172 TTV--------PAEA------QSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPTEA-----------LSGVSAIA 225 (282)
T ss_dssp TSC--------CGGG------GSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGGG-----------GSSCCEEE
T ss_pred CCC--------ceec------CCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCccc-----------CCCceEEE
Confidence 983 3222 24699999999999999 8999999999999999964311 13699999
Q ss_pred ecCCeeEEEE
Q 011775 464 CGWWHTLLLA 473 (477)
Q Consensus 464 ~G~~hs~~l~ 473 (477)
||..|+++|+
T Consensus 226 ~G~~h~~al~ 235 (282)
T 3qhy_B 226 SGEWYSLALK 235 (282)
T ss_dssp ECSSCEEEEE
T ss_pred cCCCEEEEEE
Confidence 9999999998
No 13
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.48 E-value=0.0063 Score=53.77 Aligned_cols=72 Identities=24% Similarity=0.279 Sum_probs=59.9
Q ss_pred CcEEEEeecCCeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecCCeEEEEEcCCcEEEEeCC
Q 011775 300 NYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAFGGN 379 (477)
Q Consensus 300 ~~i~~I~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~alt~~G~vy~wG~n 379 (477)
..|..|+.-..|..++--+++++.||+++.||+-..... -+..++.+|.++++-+..-..+-.||+.
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~ta-------------gPfla~~AG~~fTVTVn~~nyv~FWGDS 375 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHA-------------GPYIQLAAGHNFTVTVNTLNQVMFWGDS 375 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGG-------------CCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCCc-------------chHHhHhccCCeEEEEeceeeEEEecCC
Confidence 457888888999999999999999999999998553221 2688999999999999999999999987
Q ss_pred CCCCc
Q 011775 380 QFGQL 384 (477)
Q Consensus 380 ~~gqL 384 (477)
....|
T Consensus 376 PDNSL 380 (400)
T 4gbf_A 376 PDNSL 380 (400)
T ss_dssp TTSTT
T ss_pred CCcce
Confidence 66555
No 14
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.26 E-value=0.0079 Score=53.15 Aligned_cols=71 Identities=15% Similarity=0.157 Sum_probs=59.7
Q ss_pred cEEEEEeCCCeEEEEecCCcEEEEeCCCCCcccCCCCCccccCCcccCccccccCCCcccccccCccCCCCCCcccCCCc
Q 011775 222 RIATVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSEGPGFRVPGNY 301 (477)
Q Consensus 222 ~i~~Ia~G~~h~~aLt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (477)
.|.+|+--..|..++--+++++.||++++||+-..... -+
T Consensus 310 ~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~ta----------------------------------------gP 349 (400)
T 4gbf_A 310 PIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHA----------------------------------------GP 349 (400)
T ss_dssp CCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGG----------------------------------------CC
T ss_pred ccccccccccceEEEecCceeEEeccCCCCceecCCCc----------------------------------------ch
Confidence 68889999999999999999999999999998654321 23
Q ss_pred EEEEeecCCeEEEEecCCCEEEEeecCCCCC
Q 011775 302 VKGIACGGRHSAVITDAGALLTFGWGLYGQC 332 (477)
Q Consensus 302 i~~I~~G~~~~~~lt~~g~vy~wG~n~~gql 332 (477)
+.++.+|.++++-+..-..+-.||+....-|
T Consensus 350 fla~~AG~~fTVTVn~~nyv~FWGDSPDNSL 380 (400)
T 4gbf_A 350 YIQLAAGHNFTVTVNTLNQVMFWGDSPDNSL 380 (400)
T ss_dssp EEEEEECSSEEEEEETTCCEEEEECCTTSTT
T ss_pred HHhHhccCCeEEEEeceeeEEEecCCCCcce
Confidence 8999999999999999999999998754444
No 15
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=95.92 E-value=1.4 Score=42.96 Aligned_cols=158 Identities=7% Similarity=-0.023 Sum_probs=87.8
Q ss_pred CcEEEEEeCCCeEEEEecCCcEEEEeCCCCCcccCCCCCccccCCcccCccccccCCCcccccccCccCCCCCCcccCCC
Q 011775 221 VRIATVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSEGPGFRVPGN 300 (477)
Q Consensus 221 ~~i~~Ia~G~~h~~aLt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (477)
..|..++....+.+.-..||.|..|-....- .+..+.. ...
T Consensus 257 ~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~---------------~~~~~~~------------------------~~~ 297 (435)
T 1p22_A 257 AAVNVVDFDDKYIVSASGDRTIKVWNTSTCE---------------FVRTLNG------------------------HKR 297 (435)
T ss_dssp SCEEEEEEETTEEEEEETTSEEEEEETTTCC---------------EEEEEEC------------------------CSS
T ss_pred CcEEEEEeCCCEEEEEeCCCeEEEEECCcCc---------------EEEEEcC------------------------CCC
Confidence 3677777777777777889999999643221 1111110 012
Q ss_pred cEEEEeecCCeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecCCeEEEEEcCCcEEEEeCCC
Q 011775 301 YVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAFGGNQ 380 (477)
Q Consensus 301 ~i~~I~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~alt~~G~vy~wG~n~ 380 (477)
.|..++......+.-..+|.|..|-.... .+..........|..++....+.+.-..+|.|..|-...
T Consensus 298 ~v~~~~~~~~~l~~g~~dg~i~iwd~~~~------------~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~ 365 (435)
T 1p22_A 298 GIACLQYRDRLVVSGSSDNTIRLWDIECG------------ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVA 365 (435)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETTTC------------CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHH
T ss_pred cEEEEEeCCCEEEEEeCCCeEEEEECCCC------------CEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCC
Confidence 36666666677777788999999953221 111111112336888888667766677899999997532
Q ss_pred CCCcCCCCCCCcccceeecCCCCCCcceEEEEeCCCeEEEEECCCcEEEEECCC
Q 011775 381 FGQLGTGGDQAETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVFCWGWNK 434 (477)
Q Consensus 381 ~gqLG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~al~~~g~vy~wG~n~ 434 (477)
......... ......+. .....|..++....+.+.-..||.|..|--..
T Consensus 366 ~~~~~~~~~--~~~~~~~~---~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 366 ALDPRAPAG--TLCLRTLV---EHSGRVFRLQFDEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp HTSTTSCTT--TTEEEEEC---CCSSCCCCEEECSSCEEECCSSSEEEEEC---
T ss_pred CCCcccccc--chheeecc---CCCCCeEEEEeCCCEEEEEeCCCEEEEEECCC
Confidence 111000000 00011111 12234666777666666666799999995443
No 16
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=94.68 E-value=3.4 Score=40.13 Aligned_cols=151 Identities=13% Similarity=0.060 Sum_probs=91.0
Q ss_pred cEEEEEeCCCeEEEEecCCcEEEEeCCCCCcccCCCCCccccCCcccCccccccCCCcccccccCccCCCCCCcccCCCc
Q 011775 222 RIATVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSEGPGFRVPGNY 301 (477)
Q Consensus 222 ~i~~Ia~G~~h~~aLt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (477)
.|..++......++-..+|.|..|-.... ..+..+.. ....
T Consensus 241 ~v~~~~~~~~~l~~~~~dg~i~iwd~~~~---------------~~~~~~~~------------------------~~~~ 281 (445)
T 2ovr_B 241 AVRCVQYDGRRVVSGAYDFMVKVWDPETE---------------TCLHTLQG------------------------HTNR 281 (445)
T ss_dssp CEEEEEECSSCEEEEETTSCEEEEEGGGT---------------EEEEEECC------------------------CSSC
T ss_pred cEEEEEECCCEEEEEcCCCEEEEEECCCC---------------cEeEEecC------------------------CCCc
Confidence 56777776667777788999999953211 11111100 1123
Q ss_pred EEEEeecCCeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecCCeEEEEEcCCcEEEEeCCCC
Q 011775 302 VKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAFGGNQF 381 (477)
Q Consensus 302 i~~I~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~alt~~G~vy~wG~n~~ 381 (477)
|..++....+.+.-..+|.|..|-.... .+..........+..++......++-..+|.|..|-....
T Consensus 282 v~~~~~~~~~l~~~~~d~~i~i~d~~~~------------~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~ 349 (445)
T 2ovr_B 282 VYSLQFDGIHVVSGSLDTSIRVWDVETG------------NCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG 349 (445)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEETTTC------------CEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTC
T ss_pred eEEEEECCCEEEEEeCCCeEEEEECCCC------------CEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCC
Confidence 6677776667777788999999953221 1111111122356677777777777778999999975431
Q ss_pred CCcCCCCCCCcccceeecCCCCCCcceEEEEeCCCeEEEEECCCcEEEEECCC
Q 011775 382 GQLGTGGDQAETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVFCWGWNK 434 (477)
Q Consensus 382 gqLG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~al~~~g~vy~wG~n~ 434 (477)
. ....+..+......|..++....+.++-..||.|..|-...
T Consensus 350 ~-----------~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~ 391 (445)
T 2ovr_B 350 Q-----------CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT 391 (445)
T ss_dssp C-----------EEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred c-----------EEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCC
Confidence 1 11222211112345888888777777788899999997554
No 17
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=94.31 E-value=4.1 Score=39.47 Aligned_cols=149 Identities=9% Similarity=-0.002 Sum_probs=90.8
Q ss_pred cEEEEEeCCCeEEEEecCCcEEEEeCCCCCcccCCCCCccccCCcccCccccccCCCcccccccCccCCCCCCcccCCCc
Q 011775 222 RIATVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSEGPGFRVPGNY 301 (477)
Q Consensus 222 ~i~~Ia~G~~h~~aLt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (477)
.|..++......+.-..+|.|..|-...... ......+. -....
T Consensus 215 ~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~------------~~~~~~~~------------------------~~~~~ 258 (435)
T 1p22_A 215 AVLHLRFNNGMMVTCSKDRSIAVWDMASPTD------------ITLRRVLV------------------------GHRAA 258 (435)
T ss_dssp CEEEEECCTTEEEEEETTSCEEEEECSSSSC------------CEEEEEEC------------------------CCSSC
T ss_pred cEEEEEEcCCEEEEeeCCCcEEEEeCCCCCC------------ceeeeEec------------------------CCCCc
Confidence 5777877777777888999999995432210 00000000 01134
Q ss_pred EEEEeecCCeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecCCeEEEEEcCCcEEEEeCCCC
Q 011775 302 VKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAFGGNQF 381 (477)
Q Consensus 302 i~~I~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~alt~~G~vy~wG~n~~ 381 (477)
|..++....+.+.-..+|.|..|-.... .+..........|..++......++-..+|.|..|-....
T Consensus 259 v~~~~~~~~~l~s~~~dg~i~vwd~~~~------------~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~ 326 (435)
T 1p22_A 259 VNVVDFDDKYIVSASGDRTIKVWNTSTC------------EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG 326 (435)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEETTTC------------CEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTC
T ss_pred EEEEEeCCCEEEEEeCCCeEEEEECCcC------------cEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCC
Confidence 6677776777777788999999943211 1111111122367777777777777788999999976431
Q ss_pred CCcCCCCCCCcccceeecCCCCCCcceEEEEeCCCeEEEEECCCcEEEEEC
Q 011775 382 GQLGTGGDQAETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVFCWGW 432 (477)
Q Consensus 382 gqLG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~al~~~g~vy~wG~ 432 (477)
. ....+. .....|..++....+.+.-..||.|..|-.
T Consensus 327 ~-----------~~~~~~---~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 327 A-----------CLRVLE---GHEELVRCIRFDNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp C-----------EEEEEC---CCSSCEEEEECCSSEEEEEETTSCEEEEEH
T ss_pred C-----------EEEEEe---CCcCcEEEEEecCCEEEEEeCCCcEEEEEC
Confidence 1 111121 122457888887777777788999999964
No 18
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=92.42 E-value=6.3 Score=41.28 Aligned_cols=17 Identities=12% Similarity=0.259 Sum_probs=14.4
Q ss_pred cceEEEEec-CCcEEEee
Q 011775 107 WAHCVAVTE-GGEVYTWG 123 (477)
Q Consensus 107 ~~h~~~Lt~-~G~vy~wG 123 (477)
..|++++.. +|+||..|
T Consensus 441 ~~hs~~~~~~~~~lyv~G 458 (695)
T 2zwa_A 441 MCHTFTTISRNNQLLLIG 458 (695)
T ss_dssp BSCEEEEETTTTEEEEEC
T ss_pred cceEEEEEccCCEEEEEc
Confidence 468888876 99999999
No 19
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=87.32 E-value=29 Score=35.76 Aligned_cols=72 Identities=22% Similarity=0.312 Sum_probs=38.3
Q ss_pred CeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeecCCCCCCcceEEEE----eCCCeEEE-EECCCcEEEEECCCCC
Q 011775 362 WHTICISSDGDVYAFGGNQFGQLGTGGDQAETLPRLLDAPSLENVHSKSVS----CGARHTAV-IADDGKVFCWGWNKYG 436 (477)
Q Consensus 362 ~hs~alt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~~i~~i~----~G~~hs~a-l~~~g~vy~wG~n~~g 436 (477)
.|++++..+|+||+.|-...+.. .........+..... ...++..+. .=.+|+++ +..+|+||+.|.+.++
T Consensus 458 ~~~~~~l~~g~i~v~GG~~~~~~-~~~~~~~~~v~~ydp---~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~ 533 (656)
T 1k3i_A 458 FHTSVVLPDGSTFITGGQRRGIP-FEDSTPVFTPEIYVP---EQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCG 533 (656)
T ss_dssp SCEEEECTTSCEEEECCBSBCCT-TCCCSBCCCCEEEEG---GGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCT
T ss_pred cCCeEECCCCCEEEECCcccCcC-cCCCCcccceEEEcC---CCCceeecCCCCCccccccHhhcCCCcEEEecCCCCCC
Confidence 67777777899999996543321 111111112222221 112233222 12356654 5679999999987655
Q ss_pred C
Q 011775 437 Q 437 (477)
Q Consensus 437 q 437 (477)
.
T Consensus 534 ~ 534 (656)
T 1k3i_A 534 D 534 (656)
T ss_dssp T
T ss_pred C
Confidence 3
No 20
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=86.77 E-value=26 Score=36.59 Aligned_cols=18 Identities=22% Similarity=0.014 Sum_probs=14.6
Q ss_pred CCeEEEEec-CCcEEEEeC
Q 011775 230 GRHTLALSD-IGQVWGWGY 247 (477)
Q Consensus 230 ~~h~~aLt~-~G~vy~wG~ 247 (477)
..|+++... +|+||.+|-
T Consensus 441 ~~hs~~~~~~~~~lyv~GG 459 (695)
T 2zwa_A 441 MCHTFTTISRNNQLLLIGG 459 (695)
T ss_dssp BSCEEEEETTTTEEEEECC
T ss_pred cceEEEEEccCCEEEEEcC
Confidence 468888876 899999984
No 21
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=84.76 E-value=29 Score=33.33 Aligned_cols=148 Identities=8% Similarity=-0.037 Sum_probs=89.6
Q ss_pred cEEEEEeCCCeEEEEecCCcEEEEeCCCCCcccCCCCCccccCCcccCccccccCCCcccccccCccCCCCCCcccCCCc
Q 011775 222 RIATVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSEGPGFRVPGNY 301 (477)
Q Consensus 222 ~i~~Ia~G~~h~~aLt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (477)
.|..++......+.-..||.|..|-....- .+..+.. ....
T Consensus 201 ~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~---------------~~~~~~~------------------------~~~~ 241 (445)
T 2ovr_B 201 TVRCMHLHEKRVVSGSRDATLRVWDIETGQ---------------CLHVLMG------------------------HVAA 241 (445)
T ss_dssp CEEEEEEETTEEEEEETTSEEEEEESSSCC---------------EEEEEEC------------------------CSSC
T ss_pred cEEEEEecCCEEEEEeCCCEEEEEECCCCc---------------EEEEEcC------------------------Cccc
Confidence 577777767777778889999999643211 1100000 1123
Q ss_pred EEEEeecCCeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecCCeEEEEEcCCcEEEEeCCCC
Q 011775 302 VKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAFGGNQF 381 (477)
Q Consensus 302 i~~I~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~alt~~G~vy~wG~n~~ 381 (477)
|..++......+.-..+|.|+.|-.... .+..........|..++....+.+.-..+|.|..|=....
T Consensus 242 v~~~~~~~~~l~~~~~dg~i~iwd~~~~------------~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~ 309 (445)
T 2ovr_B 242 VRCVQYDGRRVVSGAYDFMVKVWDPETE------------TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETG 309 (445)
T ss_dssp EEEEEECSSCEEEEETTSCEEEEEGGGT------------EEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTC
T ss_pred EEEEEECCCEEEEEcCCCEEEEEECCCC------------cEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCC
Confidence 6666666667777788999999953211 1111111122367888886677777778999999976431
Q ss_pred CCcCCCCCCCcccceeecCCCCCCcceEEEEeCCCeEEEEECCCcEEEEECCC
Q 011775 382 GQLGTGGDQAETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVFCWGWNK 434 (477)
Q Consensus 382 gqLG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~al~~~g~vy~wG~n~ 434 (477)
.. ...+. .....+..++......++-..+|.|+.|-...
T Consensus 310 ~~-----------~~~~~---~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~ 348 (445)
T 2ovr_B 310 NC-----------IHTLT---GHQSLTSGMELKDNILVSGNADSTVKIWDIKT 348 (445)
T ss_dssp CE-----------EEEEC---CCCSCEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred CE-----------EEEEc---CCcccEEEEEEeCCEEEEEeCCCeEEEEECCC
Confidence 11 11111 12234667777777777778899999997543
No 22
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=82.50 E-value=28 Score=31.52 Aligned_cols=175 Identities=13% Similarity=0.066 Sum_probs=94.1
Q ss_pred CCCcEEEEEeC---CCeEEEEecCCcEEEEeCCCCCcccCCCCCccccCCcccCccccccCCCcccccccCccCCCCCCc
Q 011775 219 PGVRIATVAAG---GRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSEGPGF 295 (477)
Q Consensus 219 ~~~~i~~Ia~G---~~h~~aLt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (477)
++++|+.+.+- ....+++|++|.+.-.-...+-+-. .-...+. +.
T Consensus 66 ~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~--------~G~~~i~-lk----------------------- 113 (276)
T 3no0_A 66 REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKA--------QGMPIIK-LT----------------------- 113 (276)
T ss_dssp TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCS--------TTEECSC-CC-----------------------
T ss_pred CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhc--------CCeEEEe-cC-----------------------
Confidence 45678887761 2478889999999887654431000 0000000 00
Q ss_pred ccCCCcEEEE--eecCCeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecC--CeEEEEEcCC
Q 011775 296 RVPGNYVKGI--ACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGL--WHTICISSDG 371 (477)
Q Consensus 296 ~~~~~~i~~I--~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~hs~alt~~G 371 (477)
.+..++.+ +.+.++.+++|++|++|.+-..+.-.+|....-. + .+....+..|+.+.... .+.+++|++|
T Consensus 114 --egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv---~-~i~L~~~d~vv~~~~~~~~~~ll~~T~~G 187 (276)
T 3no0_A 114 --EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGV---Q-GIKLEKNDETSGLRIWNGEPYLLVITAKG 187 (276)
T ss_dssp --TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCE---E-CCCCCTTCCEEEEEEESSCSEEEEEETTS
T ss_pred --CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCE---E-EEccCCCCEEEEEEEeCCCCEEEEEeCCC
Confidence 11234333 3356679999999999998665544443321110 0 12222345777665543 4677788999
Q ss_pred cEEEEeCCCCCCcCCCCCCCcccceeecCCCCCCcceEEE--EeCCCeEEEEECCCcEEE--EECCCCCCcC
Q 011775 372 DVYAFGGNQFGQLGTGGDQAETLPRLLDAPSLENVHSKSV--SCGARHTAVIADDGKVFC--WGWNKYGQLG 439 (477)
Q Consensus 372 ~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~~i~~i--~~G~~hs~al~~~g~vy~--wG~n~~gqLG 439 (477)
.+.-.=...+-..+.+....... + .+..++.+ ..+....++++++|.+.. +-.++--.+|
T Consensus 188 ~~kr~~~~e~~~~~R~gkGv~~i----~----~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~i~~~~ 251 (276)
T 3no0_A 188 RVKKISHEEIPKTNRGVKGTEVS----G----TKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKDIPLST 251 (276)
T ss_dssp CEEEEEGGGSCCCCTTCCCEECC----C----SSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGGSCBCC
T ss_pred cEEEeEHHHcccCCCCCcceEEE----c----CCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHHCCCcC
Confidence 87766554443332221110111 1 11234433 235567888999999988 7655544444
No 23
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=78.34 E-value=36 Score=30.22 Aligned_cols=97 Identities=12% Similarity=0.021 Sum_probs=54.5
Q ss_pred EEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecCC-eEEEEEcCCcEEEEeCCCCCCcCCCCCC
Q 011775 312 SAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLW-HTICISSDGDVYAFGGNQFGQLGTGGDQ 390 (477)
Q Consensus 312 ~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~-hs~alt~~G~vy~wG~n~~gqLG~~~~~ 390 (477)
.++-..+|.|+.|-.... .+..........|..++...+ ..++...+|.|+.|-....
T Consensus 198 ~~~~~~dg~i~i~d~~~~------------~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~--------- 256 (313)
T 3odt_A 198 FISCSNDGLIKLVDMHTG------------DVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENG--------- 256 (313)
T ss_dssp EEEEETTSEEEEEETTTC------------CEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTC---------
T ss_pred EEEccCCCeEEEEECCch------------hhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCC---------
Confidence 556678889999843221 111111112336777776544 4555667889999965431
Q ss_pred CcccceeecCCCCCCcceEEEEeCCC-eEEEEECCCcEEEEECCC
Q 011775 391 AETLPRLLDAPSLENVHSKSVSCGAR-HTAVIADDGKVFCWGWNK 434 (477)
Q Consensus 391 ~~~~p~~v~~~~~~~~~i~~i~~G~~-hs~al~~~g~vy~wG~n~ 434 (477)
.....+. .....|..++.... ..++-..+|.|+.|-.+.
T Consensus 257 --~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 257 --SLKQVIT---LPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp --CEEEEEE---CSSSCEEEEEECTTSCEEEEETTSCEEEEESCG
T ss_pred --ceeEEEe---ccCceEEEEEEccCCCEEEEeCCCcEEEEeCCC
Confidence 1111222 12235777766443 456677899999996543
No 24
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=77.71 E-value=50 Score=31.53 Aligned_cols=121 Identities=11% Similarity=0.031 Sum_probs=59.3
Q ss_pred EEEEeecCC---eEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecCCe---EEEEEcCCcEEE
Q 011775 302 VKGIACGGR---HSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWH---TICISSDGDVYA 375 (477)
Q Consensus 302 i~~I~~G~~---~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~h---s~alt~~G~vy~ 375 (477)
|..|+...+ ..+.-..+|.|..|-..... .|..........|..|+..... .+.-..+|.|..
T Consensus 280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-----------~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~i 348 (430)
T 2xyi_A 280 VNCLSFNPYSEFILATGSADKTVALWDLRNLK-----------LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 348 (430)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETTCTT-----------SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEE
T ss_pred eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-----------CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEE
Confidence 555555332 23344578888888543211 1221111123367777775433 444456888999
Q ss_pred EeCCCCCCcCCCCCCCcccceeecCCCCCCcceEEEEeCCC---eEEEEECCCcEEEEECC
Q 011775 376 FGGNQFGQLGTGGDQAETLPRLLDAPSLENVHSKSVSCGAR---HTAVIADDGKVFCWGWN 433 (477)
Q Consensus 376 wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~---hs~al~~~g~vy~wG~n 433 (477)
|-....+..-.........|..+.........|..++.... ..+....+|.|.+|-.+
T Consensus 349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 349 WDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp EEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred EeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 97654322110000000012222211112235777766544 44556778999999644
No 25
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=76.13 E-value=53 Score=30.93 Aligned_cols=57 Identities=11% Similarity=0.099 Sum_probs=34.1
Q ss_pred eEEEEecCCcEEEecCCCCCCCccccCCCCCCCCcccCCCCCCCEEEEec--CcceEEEEecCCcEEEeeC
Q 011775 56 FAMAISDSRKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEASIVKAAA--GWAHCVAVTEGGEVYTWGW 124 (477)
Q Consensus 56 ~~~~lt~~G~v~~wG~n~~~gqlg~~~~~~~~~p~~v~~~~~~~i~~Ia~--G~~h~~~Lt~~G~vy~wG~ 124 (477)
+.++...+|.|+.|-... ++. ...+.......|..|+- ...+.++-..+|.|+.|-.
T Consensus 105 ~l~~~~~d~~v~lw~~~~--~~~----------~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 105 NVVAVALERNVYVWNADS--GSV----------SALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp SEEEEEETTEEEEEETTT--CCE----------EEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CEEEEECCCeEEEeeCCC--CcE----------eEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence 566778899999998653 221 11122222334555553 3455666677899999963
No 26
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=75.66 E-value=48 Score=30.20 Aligned_cols=28 Identities=7% Similarity=-0.045 Sum_probs=19.9
Q ss_pred cEEEEEecCCeEEEEEcCCcEEEEeCCC
Q 011775 353 QIEGVAAGLWHTICISSDGDVYAFGGNQ 380 (477)
Q Consensus 353 ~i~~i~~G~~hs~alt~~G~vy~wG~n~ 380 (477)
.|..++......+.-..+|.|..|-...
T Consensus 233 ~v~~~~~~~~~l~~~~~d~~i~~wd~~~ 260 (366)
T 3k26_A 233 YVDCVRWLGDLILSKSCENAIVCWKPGK 260 (366)
T ss_dssp CCCEEEEETTEEEEECSSSEEEEEEESS
T ss_pred eEEEEEEcCCEEEEEecCCEEEEEeCCC
Confidence 5666666566666677789999998654
No 27
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=74.81 E-value=91 Score=34.56 Aligned_cols=224 Identities=9% Similarity=0.050 Sum_probs=0.0
Q ss_pred cccceEEEEEeecCCCCCCCCCccccceEecCCCCCCcccccccccccceEEEEecCCcEEEecCCCCCCCccccCCCCC
Q 011775 7 EEKMERVVFMWGYLPGALPQRSPILSPLVVRLPLTVGSAWRDVCGGGCGFAMAISDSRKLITWGSTDDLGQSYVTSGKHG 86 (477)
Q Consensus 7 ~~~~~~~v~~WG~~~g~lg~~~~~~~p~~~~~~~~~~~~i~~v~~g~~~~~~~lt~~G~v~~wG~n~~~gqlg~~~~~~~ 86 (477)
....|+.|.+|-. ..............|..++.-..+..++...+|.|+.|-... ..
T Consensus 1020 s~~~dg~i~vwd~------------~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~-----------~~ 1076 (1249)
T 3sfz_A 1020 SSSEDSVIQVWNW------------QTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVIT-----------GR 1076 (1249)
T ss_dssp EECSSSBEEEEET------------TTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTT-----------TC
T ss_pred EEcCCCEEEEEEC------------CCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCC-----------Cc
Q ss_pred CCCcccCCCCCCCEEEEecCcceEEEEecCCcEEEeeCCCCCCCCCccCCCCCCcccccchhhcccccccccccCCcccc
Q 011775 87 EIPEPFPLPTEASIVKAAAGWAHCVAVTEGGEVYTWGWKECVPSGRVFGDLSTGTGLDKDVFERQSSFLTEQVSPRSQVS 166 (477)
Q Consensus 87 ~~p~~v~~~~~~~i~~Ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (477)
.......-.....-..++.-....+.-..||.|+.|-....
T Consensus 1077 ~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~--------------------------------------- 1117 (1249)
T 3sfz_A 1077 IERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL--------------------------------------- 1117 (1249)
T ss_dssp CCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSS---------------------------------------
T ss_pred eeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCc---------------------------------------
Q ss_pred cccCCCCCCCCCCCCCcCCCceeeeehhhcccccCCCCCCcccccceEEecCCCCcEEEEEeCCC--eEEEEecCCcEEE
Q 011775 167 RSSGGTSSGTDGRGSGEEGSKRRRISLAKQTAESSSSGDENLSAFPCLVTLNPGVRIATVAAGGR--HTLALSDIGQVWG 244 (477)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~i~~~~~~~i~~Ia~G~~--h~~aLt~~G~vy~ 244 (477)
.+...-......|..++...+ ..+.-..||.|+.
T Consensus 1118 --------------------------------------------~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~v 1153 (1249)
T 3sfz_A 1118 --------------------------------------------SPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRI 1153 (1249)
T ss_dssp --------------------------------------------SCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCE
T ss_pred --------------------------------------------ceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEE
Q ss_pred EeCCCCCcccCCCCCccccCCcccCccccccCCCcccccccCccCCCCCCcccCCCcEEEEeecCCeEEEEecCCCEEEE
Q 011775 245 WGYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSEGPGFRVPGNYVKGIACGGRHSAVITDAGALLTF 324 (477)
Q Consensus 245 wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~G~~~~~~lt~~g~vy~w 324 (477)
|-....-.+..-...........-. ..|..++...+..++++.+|.|..|
T Consensus 1154 wd~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~v~~l~fs~dg~~l~s~~g~v~vw 1203 (1249)
T 3sfz_A 1154 WNVSDGQLLHSCAPISVEEGTATHG------------------------------GWVTDVCFSPDSKTLVSAGGYLKWW 1203 (1249)
T ss_dssp EESSSSCCCCCCCCCC-------CC------------------------------SCCCEEEECTTSSCEEEESSSEEEB
T ss_pred EECCCCceEEEeccccccccccccC------------------------------ceEEEEEECCCCCEEEECCCeEEEE
Q ss_pred eecCCCCCCCCCCCCcccceeecccCCCcEEEEEecCCeEEEEEcCCcEEEE
Q 011775 325 GWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAF 376 (477)
Q Consensus 325 G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~alt~~G~vy~w 376 (477)
...................-..++....+.++.+.+|.|+.|
T Consensus 1204 ----------d~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw 1245 (1249)
T 3sfz_A 1204 ----------NVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYIL 1245 (1249)
T ss_dssp ----------CSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEE
T ss_pred ----------ECCCCceeeeeeccCCcccEEEECCCCCEEEEecCCcEEEEE
No 28
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=73.89 E-value=51 Score=29.75 Aligned_cols=127 Identities=13% Similarity=0.094 Sum_probs=67.8
Q ss_pred cEEEEEe--CCCeEEEEecCCcEEEEeCCCCCcccCCCCCccccCCcccCccccccCCCcccccccCccCCCCCCcccCC
Q 011775 222 RIATVAA--GGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSEGPGFRVPG 299 (477)
Q Consensus 222 ~i~~Ia~--G~~h~~aLt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (477)
.++.+.. +..+.+++|++|++|.+-....-.+|....- .+.-.+. .+
T Consensus 117 ~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~G------v~~i~L~-------------------------~~ 165 (276)
T 3no0_A 117 EVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARG------VQGIKLE-------------------------KN 165 (276)
T ss_dssp CEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCC------EECCCCC-------------------------TT
T ss_pred EEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCC------EEEEccC-------------------------CC
Confidence 4444433 5567899999999999976544333332110 0000010 12
Q ss_pred CcEEEEeec--CCeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEE--ecCCeEEEEEcCCcEEE
Q 011775 300 NYVKGIACG--GRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVA--AGLWHTICISSDGDVYA 375 (477)
Q Consensus 300 ~~i~~I~~G--~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~--~G~~hs~alt~~G~vy~ 375 (477)
.+|+.+..- ..+.+++|++|.+.-.-..++-..+.+..- ...- ..+.+++.+. .+.+..+++|++|++.-
T Consensus 166 d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkG-----v~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir 239 (276)
T 3no0_A 166 DETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKG-----TEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFY 239 (276)
T ss_dssp CCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCC-----EECC-CSSSCEEEEEEESSEEEEEEEETTSCEEE
T ss_pred CEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcc-----eEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEE
Confidence 445554433 347888899998887755544333222110 0000 1222444432 34567888999999987
Q ss_pred --EeCCCCCCcC
Q 011775 376 --FGGNQFGQLG 385 (477)
Q Consensus 376 --wG~n~~gqLG 385 (477)
+-.++.-.+|
T Consensus 240 ~~~~~~~i~~~~ 251 (276)
T 3no0_A 240 DKINQKDIPLST 251 (276)
T ss_dssp EEEEGGGSCBCC
T ss_pred eeeCHHHCCCcC
Confidence 6654443333
No 29
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=72.37 E-value=54 Score=29.35 Aligned_cols=105 Identities=10% Similarity=-0.051 Sum_probs=55.3
Q ss_pred EEEEeec--CCeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecC--CeEEEEEcCCcEEEEe
Q 011775 302 VKGIACG--GRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGL--WHTICISSDGDVYAFG 377 (477)
Q Consensus 302 i~~I~~G--~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~hs~alt~~G~vy~wG 377 (477)
|..++.. ....+....+|.|+.|-.... ....... ....+..++... ...++-..+|.|+.|-
T Consensus 186 i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-----------~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~ 252 (337)
T 1gxr_A 186 ASCIDISNDGTKLWTGGLDNTVRSWDLREG-----------RQLQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLH 252 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTT-----------EEEEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eEEEEECCCCCEEEEEecCCcEEEEECCCC-----------ceEeeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 5555553 335555567889999843211 0001111 122455555532 3444455678888886
Q ss_pred CCCCCCcCCCCCCCcccceeecCCCCCCcceEEEEeC--CCeEEEEECCCcEEEEECCC
Q 011775 378 GNQFGQLGTGGDQAETLPRLLDAPSLENVHSKSVSCG--ARHTAVIADDGKVFCWGWNK 434 (477)
Q Consensus 378 ~n~~gqLG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G--~~hs~al~~~g~vy~wG~n~ 434 (477)
..... ...+. .....|..++.. ....++...+|.|+.|-...
T Consensus 253 ~~~~~------------~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~ 296 (337)
T 1gxr_A 253 VNKPD------------KYQLH---LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY 296 (337)
T ss_dssp TTSSC------------EEEEC---CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CCCCC------------eEEEc---CCccceeEEEECCCCCEEEEecCCCcEEEEECCC
Confidence 54311 11111 122346666665 34455566789999997554
No 30
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=70.28 E-value=72 Score=29.93 Aligned_cols=69 Identities=10% Similarity=-0.015 Sum_probs=40.6
Q ss_pred cEEEEeecCCeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecC--CeEEEEEcCCcEEEEeC
Q 011775 301 YVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGL--WHTICISSDGDVYAFGG 378 (477)
Q Consensus 301 ~i~~I~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~hs~alt~~G~vy~wG~ 378 (477)
.|..++...+..+.-..+|.|+.|-..... .+..........|..++.-. .+.+.-..+|.|+.|-.
T Consensus 178 ~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~ 246 (401)
T 4aez_A 178 RVGCLSWNRHVLSSGSRSGAIHHHDVRIAN-----------HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDA 246 (401)
T ss_dssp CEEEEEEETTEEEEEETTSEEEEEETTSSS-----------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ceEEEEECCCEEEEEcCCCCEEEEecccCc-----------ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccC
Confidence 467777766777777889999999532111 11111111223566666643 34444567889999976
Q ss_pred CC
Q 011775 379 NQ 380 (477)
Q Consensus 379 n~ 380 (477)
..
T Consensus 247 ~~ 248 (401)
T 4aez_A 247 RS 248 (401)
T ss_dssp TC
T ss_pred CC
Confidence 53
No 31
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=70.11 E-value=70 Score=29.70 Aligned_cols=126 Identities=10% Similarity=0.067 Sum_probs=66.4
Q ss_pred EeecCCeEEEEecCCCEEEEeec--CCCCCCCCCCCCcccceeecccCCCcEEEEEecC--CeEEEEEcCCcEEEEeCCC
Q 011775 305 IACGGRHSAVITDAGALLTFGWG--LYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGL--WHTICISSDGDVYAFGGNQ 380 (477)
Q Consensus 305 I~~G~~~~~~lt~~g~vy~wG~n--~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~hs~alt~~G~vy~wG~n~ 380 (477)
++.+.++.+++|++|++|.+-.. +--..|....- . ..+....+..|+.+..-. .+.+++|++|.+.-.=...
T Consensus 153 ~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~G---v-~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 153 LCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSG---V-QGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp EECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBC---E-ESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EecCCCEEEEEECCCeEEEEECcccccCcCCcCCCC---e-eeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence 44567789999999999988765 33333322111 0 112223456777776643 4577788888665443333
Q ss_pred CCCcCCCCCCCcccceeecCCCCCCcceEEE--EeCCCeEEEEECCCcEEEEECCCCCCcC
Q 011775 381 FGQLGTGGDQAETLPRLLDAPSLENVHSKSV--SCGARHTAVIADDGKVFCWGWNKYGQLG 439 (477)
Q Consensus 381 ~gqLG~~~~~~~~~p~~v~~~~~~~~~i~~i--~~G~~hs~al~~~g~vy~wG~n~~gqLG 439 (477)
+-..+.+... -..+++... +..++.+ ..+..+.++++++|.+.-+-.++--.+|
T Consensus 229 ~~~~~R~~~G----~~~~~l~~~-~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~g 284 (327)
T 3uc1_A 229 YPVQGRGGKG----VLTVMYDRR-RGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAG 284 (327)
T ss_dssp SCBCCTTSCC----EESSCCCTT-TCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCC
T ss_pred ccccCcCCCc----EEEEEecCC-CCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccC
Confidence 2221111110 001111010 1223333 3466788999999998888544433333
No 32
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=69.95 E-value=63 Score=29.11 Aligned_cols=121 Identities=18% Similarity=0.109 Sum_probs=63.8
Q ss_pred CcEEEEeecCCeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecC---CeEEEEEcCCcEEEE
Q 011775 300 NYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGL---WHTICISSDGDVYAF 376 (477)
Q Consensus 300 ~~i~~I~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~---~hs~alt~~G~vy~w 376 (477)
..|..++...+..++.+.+|.|+.|-....+. .............|..|+... ...++-..+|.+..|
T Consensus 151 ~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---------~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~ 221 (342)
T 1yfq_A 151 NKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED---------DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVE 221 (342)
T ss_dssp CCEEEEEECSSEEEEEESTTEEEEEESSCCTT---------CCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEE
T ss_pred CceEEEEecCCcEEEEeCCCeEEEEECCcccc---------ccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEE
Confidence 34777777777777778899999996432111 011112222233566666653 455556678889888
Q ss_pred eCCCCCCcCCCCCCCcccceeecCCCC------CCcceEEEEeCC--CeEEEEECCCcEEEEECCC
Q 011775 377 GGNQFGQLGTGGDQAETLPRLLDAPSL------ENVHSKSVSCGA--RHTAVIADDGKVFCWGWNK 434 (477)
Q Consensus 377 G~n~~gqLG~~~~~~~~~p~~v~~~~~------~~~~i~~i~~G~--~hs~al~~~g~vy~wG~n~ 434 (477)
=....+.- ........+..... ....|..++... ...+.-..+|.|+.|=...
T Consensus 222 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 282 (342)
T 1yfq_A 222 FFDDQGDD-----YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT 282 (342)
T ss_dssp ECCTTCCS-----TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred EEcCCCcc-----cccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCcc
Confidence 76543100 00000111111000 012566666543 3445556789999996543
No 33
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=67.17 E-value=67 Score=28.36 Aligned_cols=145 Identities=11% Similarity=0.014 Sum_probs=78.9
Q ss_pred CcEEEEEeCCCeEEEEecCCcEEEEeCCCCCcccCCCCCccccCCcccCccccccCCCcccccccCccCCCCCCcccCCC
Q 011775 221 VRIATVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSEGPGFRVPGN 300 (477)
Q Consensus 221 ~~i~~Ia~G~~h~~aLt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (477)
..|..++......+.-..+|.|+.|- .++ .+..+.. ...
T Consensus 105 ~~i~~~~~~~~~l~~~~~d~~i~~~d---~~~--------------~~~~~~~------------------------~~~ 143 (313)
T 3odt_A 105 GNVCSLSFQDGVVISGSWDKTAKVWK---EGS--------------LVYNLQA------------------------HNA 143 (313)
T ss_dssp SCEEEEEEETTEEEEEETTSEEEEEE---TTE--------------EEEEEEC------------------------CSS
T ss_pred cCEEEEEecCCEEEEEeCCCCEEEEc---CCc--------------EEEeccc------------------------CCC
Confidence 36777777677777778899999994 110 0000000 012
Q ss_pred cEEEEee---cCCeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecCC-eEEEEEcCCcEEEE
Q 011775 301 YVKGIAC---GGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLW-HTICISSDGDVYAF 376 (477)
Q Consensus 301 ~i~~I~~---G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~-hs~alt~~G~vy~w 376 (477)
.+..+.. .....+....+|.|+.|-.. .....+.......|..++.-.+ ..++...+|.|+.|
T Consensus 144 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~-------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~ 210 (313)
T 3odt_A 144 SVWDAKVVSFSENKFLTASADKTIKLWQND-------------KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLV 210 (313)
T ss_dssp CEEEEEEEETTTTEEEEEETTSCEEEEETT-------------EEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEE
T ss_pred ceeEEEEccCCCCEEEEEECCCCEEEEecC-------------ceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEE
Confidence 2444333 45566777889999999310 0111111112335666655432 34555678899999
Q ss_pred eCCCCCCcCCCCCCCcccceeecCCCCCCcceEEEEeCCC-eEEEEECCCcEEEEECC
Q 011775 377 GGNQFGQLGTGGDQAETLPRLLDAPSLENVHSKSVSCGAR-HTAVIADDGKVFCWGWN 433 (477)
Q Consensus 377 G~n~~gqLG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~-hs~al~~~g~vy~wG~n 433 (477)
-...... ...+. .....|..++.... ..++...+|.|+.|-..
T Consensus 211 d~~~~~~-----------~~~~~---~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~ 254 (313)
T 3odt_A 211 DMHTGDV-----------LRTYE---GHESFVYCIKLLPNGDIVSCGEDRTVRIWSKE 254 (313)
T ss_dssp ETTTCCE-----------EEEEE---CCSSCEEEEEECTTSCEEEEETTSEEEEECTT
T ss_pred ECCchhh-----------hhhhh---cCCceEEEEEEecCCCEEEEecCCEEEEEECC
Confidence 7643111 11111 11234777766544 45566789999999543
No 34
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=64.51 E-value=74 Score=28.57 Aligned_cols=16 Identities=25% Similarity=0.607 Sum_probs=11.8
Q ss_pred CeEEEEEcCCcEEEEeC
Q 011775 362 WHTICISSDGDVYAFGG 378 (477)
Q Consensus 362 ~hs~alt~~G~vy~wG~ 378 (477)
.|++++. +++||+.|-
T Consensus 193 ~~~~~~~-~~~i~v~GG 208 (306)
T 3ii7_A 193 NHGLVFV-KDKIFAVGG 208 (306)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred cceEEEE-CCEEEEEeC
Confidence 5666655 679999984
No 35
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=62.22 E-value=60 Score=26.06 Aligned_cols=108 Identities=17% Similarity=0.021 Sum_probs=61.1
Q ss_pred CCcEEEEeecC-CeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEec-CCeEEEEEcCCcEEEE
Q 011775 299 GNYVKGIACGG-RHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAG-LWHTICISSDGDVYAF 376 (477)
Q Consensus 299 ~~~i~~I~~G~-~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G-~~hs~alt~~G~vy~w 376 (477)
+...+++.|-. .+.+-+..||.|-+-.. ..+...-..+... ...++.|.|- ..+.+++..+|+||+-
T Consensus 29 ~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~----------~~~~~s~lei~sv-~~G~V~L~g~~sg~yL~mn~~G~l~Gs 97 (142)
T 3p6j_A 29 GNGEVLLKSTETGQYLRINPDGTVDGTRD----------RSDTHIQFQISPE-GNGEVLLKSTETGQYLRINPDGTVDGT 97 (142)
T ss_dssp STTCEEEEETTTCCEEEECTTSBEEEECC----------TTCGGGCEEEEEE-ETTEEEEEETTTTEEEEECTTSBEEEE
T ss_pred cCcEEEEEEeCCCEEEEECCCCCEeeecC----------CCCCceEEEEEEc-cCCEEEEEEecCCEEEeECCCCCEeec
Confidence 45688999976 67788899999985432 1111221222211 1247777765 5778899999999963
Q ss_pred eCCCCCCcCCCCCCCcccceeecCCCCCCcceEEEEeCCCeEEEEECCCcEEE
Q 011775 377 GGNQFGQLGTGGDQAETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVFC 429 (477)
Q Consensus 377 G~n~~gqLG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~al~~~g~vy~ 429 (477)
-.. .+......+.....-...|..+. ....+|++++|++|.
T Consensus 98 ~~~----------t~ecsflEi~~en~y~v~i~g~~--sg~YLamnk~Grlyg 138 (142)
T 3p6j_A 98 RDR----------SDTHIQFQISPEGNGEVLLKSTE--TGQYLRINPDGTVDG 138 (142)
T ss_dssp CCT----------TCGGGCEEEEECSTTCEEEEETT--TCCEEEECTTSBEEE
T ss_pred ccC----------CCCceEEEEEeecCcEEEEEEec--CCEEEEECCCcCCcc
Confidence 221 11122222221112222233322 335899999999995
No 36
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=58.90 E-value=69 Score=25.69 Aligned_cols=106 Identities=15% Similarity=0.050 Sum_probs=59.6
Q ss_pred CCcEEEEEeCC-CeEEEEecCCcEEEEeCCCCCcccCCCCCccccCCcccCccccccCCCcccccccCccCCCCCCcccC
Q 011775 220 GVRIATVAAGG-RHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSEGPGFRVP 298 (477)
Q Consensus 220 ~~~i~~Ia~G~-~h~~aLt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (477)
.....++-|-. .+.+-+..||+|-.-..... .........+
T Consensus 29 ~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~~~--------~~s~lei~sv------------------------------ 70 (142)
T 3p6j_A 29 GNGEVLLKSTETGQYLRINPDGTVDGTRDRSD--------THIQFQISPE------------------------------ 70 (142)
T ss_dssp STTCEEEEETTTCCEEEECTTSBEEEECCTTC--------GGGCEEEEEE------------------------------
T ss_pred cCcEEEEEEeCCCEEEEECCCCCEeeecCCCC--------CceEEEEEEc------------------------------
Confidence 45788999976 67888899999986533111 0000000000
Q ss_pred CCcEEEEeec-CCeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccC--CCcEEEEEecCCeEEEEEcCCcEEE
Q 011775 299 GNYVKGIACG-GRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLL--GIQIEGVAAGLWHTICISSDGDVYA 375 (477)
Q Consensus 299 ~~~i~~I~~G-~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~--~~~i~~i~~G~~hs~alt~~G~vy~ 375 (477)
...++.|.|- ..+.+++..+|+||+- -. ..+......+.... ..-|+.+.. ...+|++.+|++|+
T Consensus 71 ~~G~V~L~g~~sg~yL~mn~~G~l~Gs--~~--------~t~ecsflEi~~en~y~v~i~g~~s--g~YLamnk~Grlyg 138 (142)
T 3p6j_A 71 GNGEVLLKSTETGQYLRINPDGTVDGT--RD--------RSDTHIQFQISPEGNGEVLLKSTET--GQYLRINPDGTVDG 138 (142)
T ss_dssp ETTEEEEEETTTTEEEEECTTSBEEEE--CC--------TTCGGGCEEEEECSTTCEEEEETTT--CCEEEECTTSBEEE
T ss_pred cCCEEEEEEecCCEEEeECCCCCEeec--cc--------CCCCceEEEEEeecCcEEEEEEecC--CEEEEECCCcCCcc
Confidence 1236777775 4688999999999964 11 11122222222111 112333333 34899999999995
No 37
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=57.55 E-value=1.1e+02 Score=27.61 Aligned_cols=124 Identities=11% Similarity=0.034 Sum_probs=59.2
Q ss_pred cEEEEeecCCeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeeccc--CCCcEEEEEec----CCeEEEEEcCCcEE
Q 011775 301 YVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSL--LGIQIEGVAAG----LWHTICISSDGDVY 374 (477)
Q Consensus 301 ~i~~I~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~--~~~~i~~i~~G----~~hs~alt~~G~vy 374 (477)
.|..++......+.-..+|.|..|-.....+.-............+..+ ....|..++.. ..+.++-..+|.|+
T Consensus 233 ~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~ 312 (366)
T 3k26_A 233 YVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLY 312 (366)
T ss_dssp CCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEE
T ss_pred eEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEE
Confidence 3555554456777777899999997544322110000001111111111 11122223222 34445556788999
Q ss_pred EEeCCCCCCcCCCCCCCcccceeecCCCCCCcceEEEEeCC--CeEEEEECCCcEEEEEC
Q 011775 375 AFGGNQFGQLGTGGDQAETLPRLLDAPSLENVHSKSVSCGA--RHTAVIADDGKVFCWGW 432 (477)
Q Consensus 375 ~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~--~hs~al~~~g~vy~wG~ 432 (477)
.|-......+ ......+... .....|..++... ..-+.-..||.|+.|-.
T Consensus 313 vwd~~~~~~~-------~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 313 VWDLEVEDPH-------KAKCTTLTHH-KCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp EEECCSSSGG-------GCEEEEECCT-TCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred EEECCCCCCc-------cccceEEccc-ccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 9986542111 0011122211 0134577777654 34555668899999953
No 38
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=56.14 E-value=1.4e+02 Score=28.38 Aligned_cols=109 Identities=14% Similarity=0.046 Sum_probs=66.5
Q ss_pred CcEEEEeecCCeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecC--CeEEEEEcCCcEEEEe
Q 011775 300 NYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGL--WHTICISSDGDVYAFG 377 (477)
Q Consensus 300 ~~i~~I~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~hs~alt~~G~vy~wG 377 (477)
..+..++......+.-..+|.|+.|-.... .+..........|..++... ...+.-..+|.|+.|-
T Consensus 271 ~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd 338 (464)
T 3v7d_B 271 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQM------------KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWD 338 (464)
T ss_dssp SCEEEEEEETTEEEEEETTSCEEEEETTTT------------EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred ceEEEEcCCCCEEEEEeCCCeEEEEECCCC------------cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence 346777777778888888999999953211 11111111223566666654 3555566788899997
Q ss_pred CCCCCCcCCCCCCCcccceeecCCCCCCcceEEEEeCCCeEEEEECCCcEEEEECCC
Q 011775 378 GNQFGQLGTGGDQAETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVFCWGWNK 434 (477)
Q Consensus 378 ~n~~gqLG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~al~~~g~vy~wG~n~ 434 (477)
.... + ....+. .....|..++....+.+.-..||.|.+|-.+.
T Consensus 339 ~~~~-~----------~~~~~~---~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 339 LENG-E----------LMYTLQ---GHTALVGLLRLSDKFLVSAAADGSIRGWDAND 381 (464)
T ss_dssp TTTT-E----------EEEEEC---CCSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred CCCC-c----------EEEEEe---CCCCcEEEEEEcCCEEEEEeCCCcEEEEECCC
Confidence 5431 1 111111 12245777888777777888999999997654
No 39
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=55.69 E-value=1.1e+02 Score=27.13 Aligned_cols=106 Identities=11% Similarity=-0.080 Sum_probs=55.3
Q ss_pred EEEEeec--CCeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecC--CeEEEEEcCCcEEEEe
Q 011775 302 VKGIACG--GRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGL--WHTICISSDGDVYAFG 377 (477)
Q Consensus 302 i~~I~~G--~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~hs~alt~~G~vy~wG 377 (477)
|..++.. ..+.+.-..+|.|+.|-.... .+..........|..++... ...++...+|.|+.|-
T Consensus 144 i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d 211 (337)
T 1gxr_A 144 CYALAISPDSKVCFSCCSDGNIAVWDLHNQ------------TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTT------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCC------------ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEE
Confidence 5554443 335555667899999843210 11111111233577776643 3445556788999997
Q ss_pred CCCCCCcCCCCCCCcccceeecCCCCCCcceEEEEeC--CCeEEEEECCCcEEEEECCC
Q 011775 378 GNQFGQLGTGGDQAETLPRLLDAPSLENVHSKSVSCG--ARHTAVIADDGKVFCWGWNK 434 (477)
Q Consensus 378 ~n~~gqLG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G--~~hs~al~~~g~vy~wG~n~ 434 (477)
...... ...+.. ...+..++.. ....++-..+|.|+.|-...
T Consensus 212 ~~~~~~-----------~~~~~~----~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~ 255 (337)
T 1gxr_A 212 LREGRQ-----------LQQHDF----TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK 255 (337)
T ss_dssp TTTTEE-----------EEEEEC----SSCEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred CCCCce-----------EeeecC----CCceEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence 543111 111111 1235555543 33445556788999996544
No 40
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=53.03 E-value=1.8e+02 Score=28.68 Aligned_cols=111 Identities=10% Similarity=-0.013 Sum_probs=60.2
Q ss_pred cEEEEeecCCeEEEEec-CCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecC--CeEEEEEcCCcEEEEe
Q 011775 301 YVKGIACGGRHSAVITD-AGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGL--WHTICISSDGDVYAFG 377 (477)
Q Consensus 301 ~i~~I~~G~~~~~~lt~-~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~hs~alt~~G~vy~wG 377 (477)
.+..++....+.++-.. +|.|+.|-.... ...+..+. .....|..++... .+.+.-..+|.|+.|-
T Consensus 448 ~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~----------~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~ 516 (615)
T 1pgu_A 448 PGSAVSLSQNYVAVGLEEGNTIQVFKLSDL----------EVSFDLKT-PLRAKPSYISISPSETYIAAGDVMGKILLYD 516 (615)
T ss_dssp CEEEEEECSSEEEEEETTTSCEEEEETTEE----------EEEEECSS-CCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CceEEEEcCCEEEEeecCCCeEEEEECCCc----------cccccccC-CccCceEEEEECCCCCEEEEcCCCCeEEEee
Confidence 35555555555555566 899998853221 00001111 1123577776643 4455556789999997
Q ss_pred CCCCCCcCCCCCCCcccceeecCCCCCCcceEEEEeCC------------CeEEEEECCCcEEEEECCCC
Q 011775 378 GNQFGQLGTGGDQAETLPRLLDAPSLENVHSKSVSCGA------------RHTAVIADDGKVFCWGWNKY 435 (477)
Q Consensus 378 ~n~~gqLG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~------------~hs~al~~~g~vy~wG~n~~ 435 (477)
......+. .+. ......|..++... ..-+.-..||.|+.|-....
T Consensus 517 ~~~~~~~~-----------~~~--~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 573 (615)
T 1pgu_A 517 LQSREVKT-----------SRW--AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 573 (615)
T ss_dssp TTTTEEEE-----------CCS--CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred CCCCccee-----------Eee--cCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCC
Confidence 65322111 111 11224577777643 44455567999999976553
No 41
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=51.99 E-value=1.5e+02 Score=27.44 Aligned_cols=69 Identities=12% Similarity=0.094 Sum_probs=42.4
Q ss_pred ccceEEEEecCCcEEEecCCCCCCCccccCCCCCCCCcccCCCCCCCEEEEecCc-----ceEEEEecCCcEEEee
Q 011775 53 GCGFAMAISDSRKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEASIVKAAAGW-----AHCVAVTEGGEVYTWG 123 (477)
Q Consensus 53 ~~~~~~~lt~~G~v~~wG~n~~~gqlg~~~~~~~~~p~~v~~~~~~~i~~Ia~G~-----~h~~~Lt~~G~vy~wG 123 (477)
...+.+++|+.|++|..--.. ....+. ......+...+++..+.+|+.+.+.. ...+++|++|.+.-.-
T Consensus 52 t~d~ll~fT~~Gr~y~~~~~~-lp~~~r-~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~ 125 (327)
T 3uc1_A 52 THDLILFFTTQGRVYRAKAYD-LPEASR-TARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSK 125 (327)
T ss_dssp TTSEEEEEETTSEEEEEEGGG-SCBCCS-SSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEEHHH-CcCCCc-cCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeE
Confidence 334678889999999876432 221110 00111122345677778899876653 4678889999888665
No 42
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=51.08 E-value=2.3e+02 Score=29.31 Aligned_cols=108 Identities=11% Similarity=-0.021 Sum_probs=54.4
Q ss_pred EEEEeecC---CeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEe----cCCeEEEEEcCCcEE
Q 011775 302 VKGIACGG---RHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAA----GLWHTICISSDGDVY 374 (477)
Q Consensus 302 i~~I~~G~---~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~----G~~hs~alt~~G~vy 374 (477)
|..++... ...+.-..+|.|+.|-.... .....+.......|..++. .....++-..+|.|+
T Consensus 143 v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 211 (814)
T 3mkq_A 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQS-----------TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211 (814)
T ss_dssp EEEEEEETTEEEEEEEEETTSEEEEEETTCS-----------SCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEE
T ss_pred EEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----------cceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEE
Confidence 55555433 34455567899999953211 0111111111123444444 334445556788899
Q ss_pred EEeCCCCCCcCCCCCCCcccceeecCCCCCCcceEEEEeCCC--eEEEEECCCcEEEEECCC
Q 011775 375 AFGGNQFGQLGTGGDQAETLPRLLDAPSLENVHSKSVSCGAR--HTAVIADDGKVFCWGWNK 434 (477)
Q Consensus 375 ~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~--hs~al~~~g~vy~wG~n~ 434 (477)
.|-.... .....+.. ....|..++.... ..+.-..+|.|+.|-...
T Consensus 212 ~~d~~~~-----------~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 212 IWDYQTK-----------SCVATLEG---HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (814)
T ss_dssp EEETTTT-----------EEEEEEEC---CSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred EEECCCC-----------cEEEEEcC---CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 9965321 11122221 1234666655443 445556789999996554
No 43
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=49.42 E-value=1.8e+02 Score=27.60 Aligned_cols=149 Identities=7% Similarity=0.034 Sum_probs=84.7
Q ss_pred CcEEEEEeCCCeEEEEecCCcEEEEeCCCCCcccCCCCCccccCCcccCccccccCCCcccccccCccCCCCCCcccCCC
Q 011775 221 VRIATVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSEGPGFRVPGN 300 (477)
Q Consensus 221 ~~i~~Ia~G~~h~~aLt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (477)
..|..++....+.+.-..+|.|..|-....- .+..+.. ...
T Consensus 271 ~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~---------------~~~~~~~------------------------~~~ 311 (464)
T 3v7d_B 271 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK---------------CLYILSG------------------------HTD 311 (464)
T ss_dssp SCEEEEEEETTEEEEEETTSCEEEEETTTTE---------------EEEEECC------------------------CSS
T ss_pred ceEEEEcCCCCEEEEEeCCCeEEEEECCCCc---------------EEEEecC------------------------CCC
Confidence 4677787777788888899999999653211 1110000 012
Q ss_pred cEEEEeec--CCeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecCCeEEEEEcCCcEEEEeC
Q 011775 301 YVKGIACG--GRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAFGG 378 (477)
Q Consensus 301 ~i~~I~~G--~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~alt~~G~vy~wG~ 378 (477)
.|..++.. ....+.-..+|.|+.|-... + .+...-......|..++....+.+.-..+|.|..|-.
T Consensus 312 ~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~-----------~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~ 379 (464)
T 3v7d_B 312 RIYSTIYDHERKRCISASMDTTIRIWDLEN-G-----------ELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDA 379 (464)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEETTT-T-----------EEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEET
T ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCC-C-----------cEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEEC
Confidence 35555443 33556667889999984321 1 1111111123367788887777777888999999976
Q ss_pred CCCCCcCCCCCCCcccceeecCCCCCCcceEEEEeCCCeEEEEECCCcEEEEECCC
Q 011775 379 NQFGQLGTGGDQAETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVFCWGWNK 434 (477)
Q Consensus 379 n~~gqLG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~al~~~g~vy~wG~n~ 434 (477)
....+ ..... ......+..+..... .++...+|.|+.|=...
T Consensus 380 ~~~~~-----------~~~~~--~~~~~~~~~~~~~~~-~l~~~~dg~i~iwd~~~ 421 (464)
T 3v7d_B 380 NDYSR-----------KFSYH--HTNLSAITTFYVSDN-ILVSGSENQFNIYNLRS 421 (464)
T ss_dssp TTCCE-----------EEEEE--CTTCCCEEEEEECSS-EEEEEETTEEEEEETTT
T ss_pred CCCce-----------eeeec--CCCCccEEEEEeCCC-EEEEecCCeEEEEECCC
Confidence 54211 11111 112234555555544 44445589999996554
No 44
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=47.64 E-value=81 Score=32.32 Aligned_cols=57 Identities=16% Similarity=0.143 Sum_probs=31.9
Q ss_pred CeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEE----ecCCeEEEEEcCCcEEEEeC
Q 011775 310 RHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVA----AGLWHTICISSDGDVYAFGG 378 (477)
Q Consensus 310 ~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~----~G~~hs~alt~~G~vy~wG~ 378 (477)
.+++++..+|+||.+|-.... . ..+-.+.......+. .-..|++++..+|+||++|-
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~--------~----v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG 305 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAK--------K----TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGG 305 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTT--------C----EEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECC
T ss_pred cccccCCCCCCEEEeCCCCCC--------c----eEEecCcCCceeECCCCCccccccceEEecCCeEEEEeC
Confidence 345677789999999843211 0 111111111111111 22467878777899999996
No 45
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=47.04 E-value=1.6e+02 Score=26.41 Aligned_cols=115 Identities=10% Similarity=-0.027 Sum_probs=57.6
Q ss_pred EEEEeecCCeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeeccc--CCCcEEEEEecCCe----EEEEEcCCcEEE
Q 011775 302 VKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSL--LGIQIEGVAAGLWH----TICISSDGDVYA 375 (477)
Q Consensus 302 i~~I~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~--~~~~i~~i~~G~~h----s~alt~~G~vy~ 375 (477)
+..+..-....++.+.++.++.|-...... ....+... ....+..+...... .++-..+|.|..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i 242 (368)
T 3mmy_A 173 CYCADVIYPMAVVATAERGLIVYQLENQPS----------EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAI 242 (368)
T ss_dssp EEEEEEETTEEEEEEGGGCEEEEECSSSCE----------EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEE
T ss_pred ceEEEecCCeeEEEeCCCcEEEEEeccccc----------hhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEE
Confidence 455555566777888899999985432110 01111111 11133344433332 566677899999
Q ss_pred EeCCCCCCcCCCCCCCcccceeecCCC---------CCCcceEEEEeCCC--eEEEEECCCcEEEEECCC
Q 011775 376 FGGNQFGQLGTGGDQAETLPRLLDAPS---------LENVHSKSVSCGAR--HTAVIADDGKVFCWGWNK 434 (477)
Q Consensus 376 wG~n~~gqLG~~~~~~~~~p~~v~~~~---------~~~~~i~~i~~G~~--hs~al~~~g~vy~wG~n~ 434 (477)
|-....... .....+.... .....|..++.... ..+.-..||.|+.|-...
T Consensus 243 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~ 304 (368)
T 3mmy_A 243 HYINPPNPA--------KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA 304 (368)
T ss_dssp EESSCSCHH--------HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred EecCCCCcc--------ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCC
Confidence 876542110 0000111000 00013666666543 445556799999996543
No 46
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=46.89 E-value=1.6e+02 Score=26.36 Aligned_cols=239 Identities=11% Similarity=0.045 Sum_probs=0.0
Q ss_pred CcccccccccccceEEEEec-----CCcEEEecCCCCCCCccccCCCCCCCCcccCCCCCCCEEEEecCc-----ceEEE
Q 011775 43 GSAWRDVCGGGCGFAMAISD-----SRKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEASIVKAAAGW-----AHCVA 112 (477)
Q Consensus 43 ~~~i~~v~~g~~~~~~~lt~-----~G~v~~wG~n~~~gqlg~~~~~~~~~p~~v~~~~~~~i~~Ia~G~-----~h~~~ 112 (477)
...|..++---.+-.++++. ||.|+.|-.... .............|..++-.. ...+.
T Consensus 18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ 85 (357)
T 3i2n_A 18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHG------------DLKLLREIEKAKPIKCGTFGATSLQQRYLAT 85 (357)
T ss_dssp SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSS------------SEEEEEEEEESSCEEEEECTTCCTTTCCEEE
T ss_pred CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCC------------cccceeeecccCcEEEEEEcCCCCCCceEEE
Q ss_pred EecCCcEEEeeCCCCCCCCCccCCCCCCcccccchhhcccccccccccCCcccccccCCCCCCCCCCCCCcCCCceeeee
Q 011775 113 VTEGGEVYTWGWKECVPSGRVFGDLSTGTGLDKDVFERQSSFLTEQVSPRSQVSRSSGGTSSGTDGRGSGEEGSKRRRIS 192 (477)
Q Consensus 113 Lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (477)
-..||.|..|-....
T Consensus 86 ~~~dg~i~iwd~~~~----------------------------------------------------------------- 100 (357)
T 3i2n_A 86 GDFGGNLHIWNLEAP----------------------------------------------------------------- 100 (357)
T ss_dssp EETTSCEEEECTTSC-----------------------------------------------------------------
T ss_pred ecCCCeEEEEeCCCC-----------------------------------------------------------------
Q ss_pred hhhcccccCCCCCCccccc-ceEEecCCCCcEEEE--------EeCCCeEEEEecCCcEEEEeCCCCCcccCCCCCcccc
Q 011775 193 LAKQTAESSSSGDENLSAF-PCLVTLNPGVRIATV--------AAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVS 263 (477)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~-P~~i~~~~~~~i~~I--------a~G~~h~~aLt~~G~vy~wG~n~~gqlG~~~~~~~~~ 263 (477)
. +...-......|..+ +....+.+.-..+|.|..|-.... .......
T Consensus 101 ------------------~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~------~~~~~~~ 156 (357)
T 3i2n_A 101 ------------------EMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQK------DDPVANM 156 (357)
T ss_dssp ------------------SSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSC------SSCSEEE
T ss_pred ------------------CccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCC------CCcceec
Q ss_pred CCcccCccccccCCCcccccccCccCCCCCCcccCCCcEEEEe------ecCCeEEEEecCCCEEEEeecCCCCCCCCCC
Q 011775 264 SPHPIPCIESSYGKDRSAALSRGSVNSEGPGFRVPGNYVKGIA------CGGRHSAVITDAGALLTFGWGLYGQCGQGST 337 (477)
Q Consensus 264 ~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~------~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~ 337 (477)
.+..-..... +..++ ....+.+.-..+|.|+.| +.
T Consensus 157 ~~~~~~~~~~----------------------------v~~~~~~~~~~~~~~~l~~~~~d~~i~i~-----------d~ 197 (357)
T 3i2n_A 157 EPVQGENKRD----------------------------CWTVAFGNAYNQEERVVCAGYDNGDIKLF-----------DL 197 (357)
T ss_dssp CCCTTSCCCC----------------------------EEEEEEECCCC-CCCEEEEEETTSEEEEE-----------ET
T ss_pred cccCCCCCCc----------------------------eEEEEEEeccCCCCCEEEEEccCCeEEEE-----------EC
Q ss_pred CCcccceeecccCCCcEEEEEe---cCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeecCCCCCCcceEEEEeC
Q 011775 338 DDELSPNCVSSLLGIQIEGVAA---GLWHTICISSDGDVYAFGGNQFGQLGTGGDQAETLPRLLDAPSLENVHSKSVSCG 414 (477)
Q Consensus 338 ~~~~~p~~v~~~~~~~i~~i~~---G~~hs~alt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G 414 (477)
................-..+.. .....++-..+|.|+.|-......+ ...+.... ......|..++..
T Consensus 198 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------~~~~~~~~--~~~~~~v~~~~~~ 268 (357)
T 3i2n_A 198 RNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT-------KGFASVSE--KAHKSTVWQVRHL 268 (357)
T ss_dssp TTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT-------TEEEEEEE--ECCSSCEEEEEEE
T ss_pred ccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc-------cceeeecc--CCCcCCEEEEEEC
Q ss_pred CC---eEEEEECCCcEEEE
Q 011775 415 AR---HTAVIADDGKVFCW 430 (477)
Q Consensus 415 ~~---hs~al~~~g~vy~w 430 (477)
.. ..+.-..+|.|+.|
T Consensus 269 ~~~~~~l~~~~~dg~i~iw 287 (357)
T 3i2n_A 269 PQNRELFLTAGGAGGLHLW 287 (357)
T ss_dssp TTEEEEEEEEETTSEEEEE
T ss_pred CCCCcEEEEEeCCCcEEEe
No 47
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=46.51 E-value=1.2e+02 Score=26.94 Aligned_cols=132 Identities=13% Similarity=0.103 Sum_probs=0.0
Q ss_pred CcccccccccccceEEEEecCCcEEEecCCCCCCCccccCCCCCCCCcccCCCCCCCEEEEec--CcceEEEEecCCcEE
Q 011775 43 GSAWRDVCGGGCGFAMAISDSRKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEASIVKAAA--GWAHCVAVTEGGEVY 120 (477)
Q Consensus 43 ~~~i~~v~~g~~~~~~~lt~~G~v~~wG~n~~~gqlg~~~~~~~~~p~~v~~~~~~~i~~Ia~--G~~h~~~Lt~~G~vy 120 (477)
+.-+..+.+-...+.+++|+.|++|..--.. +.............+.+..+..|+.+.. ...+.+++|++|.+.
T Consensus 33 D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~e----lp~~r~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~K 108 (256)
T 1zvt_A 33 DSFKAAVKGKSNQPVVFVDSTGRSYAIDPIT----LPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGF 108 (256)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECGGG----SCCSSSCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEE
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHH----CCCcCCCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEE
Q ss_pred EeeCCCCCCCCCccCCCCCCcccccchhhcccccccccccCCcccccccCCCCCCCCCCCCCcCCCceeeeehhhccccc
Q 011775 121 TWGWKECVPSGRVFGDLSTGTGLDKDVFERQSSFLTEQVSPRSQVSRSSGGTSSGTDGRGSGEEGSKRRRISLAKQTAES 200 (477)
Q Consensus 121 ~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (477)
-.-..++
T Consensus 109 r~~~~e~------------------------------------------------------------------------- 115 (256)
T 1zvt_A 109 VCTFNDL------------------------------------------------------------------------- 115 (256)
T ss_dssp EEEGGGG-------------------------------------------------------------------------
T ss_pred EeEHHHh-------------------------------------------------------------------------
Q ss_pred CCCCCCcccccceEEecCCCCcEEEEEeC---CCeEEEEecCCcEEEEeCCCCCcccC
Q 011775 201 SSSGDENLSAFPCLVTLNPGVRIATVAAG---GRHTLALSDIGQVWGWGYGGEGQLGL 255 (477)
Q Consensus 201 ~~~~~~~~~~~P~~i~~~~~~~i~~Ia~G---~~h~~aLt~~G~vy~wG~n~~gqlG~ 255 (477)
......--..+...++..++.+..- .++.+++|++|++.-+-.+..-.+|.
T Consensus 116 ----~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ei~~~gR 169 (256)
T 1zvt_A 116 ----VARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 169 (256)
T ss_dssp ----CCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGGSCBCSS
T ss_pred ----cccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHHCCCcCc
No 48
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=46.00 E-value=1.8e+02 Score=26.73 Aligned_cols=106 Identities=21% Similarity=0.105 Sum_probs=56.2
Q ss_pred EEEEee--cCCeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecCC-eEEEEEcCCcEEEEeC
Q 011775 302 VKGIAC--GGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLW-HTICISSDGDVYAFGG 378 (477)
Q Consensus 302 i~~I~~--G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~-hs~alt~~G~vy~wG~ 378 (477)
|..++. .....+.-..+|.|+.|-.... .....+. .....|..++...+ ..++...+|.|+.|=.
T Consensus 250 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-----------~~~~~~~-~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~ 317 (425)
T 1r5m_A 250 ISVLEFNDTNKLLLSASDDGTLRIWHGGNG-----------NSQNCFY-GHSQSIVSASWVGDDKVISCSMDGSVRLWSL 317 (425)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEECSSSB-----------SCSEEEC-CCSSCEEEEEEETTTEEEEEETTSEEEEEET
T ss_pred eEEEEECCCCCEEEEEcCCCEEEEEECCCC-----------ccceEec-CCCccEEEEEECCCCEEEEEeCCCcEEEEEC
Confidence 444443 2335555567888998842211 0111111 12335667766544 5555667889999975
Q ss_pred CCCCCcCCCCCCCcccceeecCCCCCCcceEEEEeC--CCeEEEEECCCcEEEEECC
Q 011775 379 NQFGQLGTGGDQAETLPRLLDAPSLENVHSKSVSCG--ARHTAVIADDGKVFCWGWN 433 (477)
Q Consensus 379 n~~gqLG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G--~~hs~al~~~g~vy~wG~n 433 (477)
...- ....+. .....|..++.. ....++-..+|.|+.|-..
T Consensus 318 ~~~~-----------~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 318 KQNT-----------LLALSI---VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp TTTE-----------EEEEEE---CTTCCEEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred CCCc-----------EeEecc---cCCccEEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence 4311 111111 112346666654 3345556678999999654
No 49
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=45.83 E-value=1.8e+02 Score=26.67 Aligned_cols=106 Identities=13% Similarity=0.062 Sum_probs=53.9
Q ss_pred EEEEeecC--CeEE-EEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecC---CeEEEEEcCCcEEE
Q 011775 302 VKGIACGG--RHSA-VITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGL---WHTICISSDGDVYA 375 (477)
Q Consensus 302 i~~I~~G~--~~~~-~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~---~hs~alt~~G~vy~ 375 (477)
+..|+... .+.+ .-..++.|+.|-.... .+..........|..|+... ...+.-..||.|+.
T Consensus 229 v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~------------~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~i 296 (357)
T 4g56_B 229 PTSVTWHPEKDDTFACGDETGNVSLVNIKNP------------DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAV 296 (357)
T ss_dssp EEEEEECTTSTTEEEEEESSSCEEEEESSCG------------GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEE
T ss_pred ccchhhhhcccceEEEeecccceeEEECCCC------------cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence 55565432 2233 3367888998842210 11111111233677777643 23333457899999
Q ss_pred EeCCCCCCcCCCCCCCcccceeecCCCCCCcceEEEEeC---CCeEEEEECCCcEEEEECCC
Q 011775 376 FGGNQFGQLGTGGDQAETLPRLLDAPSLENVHSKSVSCG---ARHTAVIADDGKVFCWGWNK 434 (477)
Q Consensus 376 wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G---~~hs~al~~~g~vy~wG~n~ 434 (477)
|=... ++ .+..... ...|..|+.. ....+.-..||.|+.|=-..
T Consensus 297 wd~~~-~~-------------~~~~~~H-~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 297 LDADF-SE-------------VFRDLSH-RDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp ECTTS-CE-------------EEEECCC-SSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred EECCC-Cc-------------EeEECCC-CCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 94322 11 1111111 2357888764 22333346799999996544
No 50
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=45.62 E-value=1.7e+02 Score=26.25 Aligned_cols=111 Identities=9% Similarity=-0.075 Sum_probs=59.7
Q ss_pred cEEEEee--cCC--eEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecCCeEEEEEcCCcEEEE
Q 011775 301 YVKGIAC--GGR--HSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAF 376 (477)
Q Consensus 301 ~i~~I~~--G~~--~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~alt~~G~vy~w 376 (477)
.|..++. ..+ +.+.-..+|.|+.|-.... .....+.. ...+..+..-....++.+.++.++.|
T Consensus 129 ~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-----------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~ 195 (368)
T 3mmy_A 129 PVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS-----------NPMMVLQL--PERCYCADVIYPMAVVATAERGLIVY 195 (368)
T ss_dssp CEEEEEEEECSSCEEEEEEETTSEEEEECSSCS-----------SCSEEEEC--SSCEEEEEEETTEEEEEEGGGCEEEE
T ss_pred ceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC-----------cEEEEEec--CCCceEEEecCCeeEEEeCCCcEEEE
Confidence 3666654 322 3444467899999942211 01111111 12566666667778888889999999
Q ss_pred eCCCCCCcCCCCCCCcccceeecCCCCCCcceEEEEeCCCe----EEEEECCCcEEEEECCC
Q 011775 377 GGNQFGQLGTGGDQAETLPRLLDAPSLENVHSKSVSCGARH----TAVIADDGKVFCWGWNK 434 (477)
Q Consensus 377 G~n~~gqLG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~h----s~al~~~g~vy~wG~n~ 434 (477)
-...... ....+..+......+..+...... .++-..+|.|..|-.+.
T Consensus 196 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~ 247 (368)
T 3mmy_A 196 QLENQPS----------EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP 247 (368)
T ss_dssp ECSSSCE----------EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSC
T ss_pred Eeccccc----------hhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCC
Confidence 8653211 111111111122334444444443 66677899999997654
No 51
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=45.12 E-value=1.6e+02 Score=26.00 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=14.4
Q ss_pred eEEEEEcCCcEEEEeCCCCCCcCC
Q 011775 363 HTICISSDGDVYAFGGNQFGQLGT 386 (477)
Q Consensus 363 hs~alt~~G~vy~wG~n~~gqLG~ 386 (477)
+.+.++.+|+| .|=.+.....|.
T Consensus 245 ~~~~~~~~g~~-~W~~~~~~~~~~ 267 (276)
T 3no2_A 245 QLVEIDSEGKV-VWQLNDKVKFGM 267 (276)
T ss_dssp SEEEECTTSBE-EEEECCTTTSCC
T ss_pred eEEEECCCCCE-EEEecCcccccc
Confidence 57778888885 555555445443
No 52
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=45.03 E-value=61 Score=30.98 Aligned_cols=76 Identities=7% Similarity=0.063 Sum_probs=47.4
Q ss_pred ccceeecccCCCcEEEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeecCCCCCCcceEEEEeCCCeEEE
Q 011775 341 LSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAFGGNQFGQLGTGGDQAETLPRLLDAPSLENVHSKSVSCGARHTAV 420 (477)
Q Consensus 341 ~~p~~v~~~~~~~i~~i~~G~~hs~alt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~a 420 (477)
+.|.....+.. |.+|++ +...+++..++.|..|=.....+.. .. ...+ ..+.++.+-....++
T Consensus 79 ~~~~~~~~lp~--V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~~~-------~~-~~~~------~~v~~i~~~~p~~av 141 (388)
T 1xip_A 79 LTFKWEKEIPD--VIFVCF-HGDQVLVSTRNALYSLDLEELSEFR-------TV-TSFE------KPVFQLKNVNNTLVI 141 (388)
T ss_dssp CCCSEEEECTT--EEEEEE-ETTEEEEEESSEEEEEESSSTTCEE-------EE-EECS------SCEEEEEECSSEEEE
T ss_pred ccceEEeeCCC--eeEEEE-CCCEEEEEcCCcEEEEEchhhhccC-------cc-ceee------cceeeEEecCCCEEE
Confidence 44533333443 899999 7777888888889988755432210 00 1111 235566666666778
Q ss_pred EECCCcEEEEECC
Q 011775 421 IADDGKVFCWGWN 433 (477)
Q Consensus 421 l~~~g~vy~wG~n 433 (477)
++.+|.|++|=-.
T Consensus 142 ~~~dG~L~v~dl~ 154 (388)
T 1xip_A 142 LNSVNDLSALDLR 154 (388)
T ss_dssp EETTSEEEEEETT
T ss_pred EECCCCEEEEEcc
Confidence 8999999999543
No 53
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=43.76 E-value=2.7e+02 Score=28.78 Aligned_cols=69 Identities=10% Similarity=0.144 Sum_probs=43.8
Q ss_pred ccccceEEEEecCCcEEEecCCCCCCCccccCCCCCCCCcccCCCCCCCEEEEecC--cceEEEEecCCcEEEee
Q 011775 51 GGGCGFAMAISDSRKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEASIVKAAAG--WAHCVAVTEGGEVYTWG 123 (477)
Q Consensus 51 ~g~~~~~~~lt~~G~v~~wG~n~~~gqlg~~~~~~~~~p~~v~~~~~~~i~~Ia~G--~~h~~~Lt~~G~vy~wG 123 (477)
+-...+.+++|+.|++|.---.. ... .......+...+++..+.+|+.+-+. ..+.++.|++|.+.-.-
T Consensus 511 ~~t~d~ll~ft~~Gr~y~~~~~~-lP~---~~~~G~~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~ 581 (716)
T 1zvu_A 511 GKSNQPVVFVDSTGRSYAIDPIT-LPS---ARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCT 581 (716)
T ss_dssp CCSSSCEEEEETTSEEEEECTTT-SCC---CC---CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEE
T ss_pred ecCCCEEEEEecCCcEEEEEeee-ccc---ccccCeeHHhccCCCCCCeEEEEEEecCCceEEEEeCCceEEEec
Confidence 33344688889999999877542 222 12223334455667777889887765 34567778888887654
No 54
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=42.07 E-value=2.2e+02 Score=26.63 Aligned_cols=95 Identities=9% Similarity=0.151 Sum_probs=46.9
Q ss_pred cccceEEEEEeecCCCCCCCCCccccceEecCCCCCCccccccccccc-ceEEEEecCCcEEEecCCCCCCCccccCCCC
Q 011775 7 EEKMERVVFMWGYLPGALPQRSPILSPLVVRLPLTVGSAWRDVCGGGC-GFAMAISDSRKLITWGSTDDLGQSYVTSGKH 85 (477)
Q Consensus 7 ~~~~~~~v~~WG~~~g~lg~~~~~~~p~~~~~~~~~~~~i~~v~~g~~-~~~~~lt~~G~v~~wG~n~~~gqlg~~~~~~ 85 (477)
++..|++||+|=...+.+ . ....... ....|..|+--.. .+.+.-..||.|..|-... ++.-
T Consensus 120 Avgld~tV~lWd~~tg~~-------~-~~~~~~~-~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~--~~~~------ 182 (420)
T 4gga_A 120 AVALDNSVYLWSASSGDI-------L-QLLQMEQ-PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ--QKRL------ 182 (420)
T ss_dssp EEEETTEEEEEETTTCCE-------E-EEEECCS-TTCCEEEEEECTTSSEEEEEETTSCEEEEETTT--TEEE------
T ss_pred EEEeCCEEEEEECCCCCE-------E-EEEEecC-CCCcEEEEEECCCCCEEEEEECCCeEEEEEcCC--CcEE------
Confidence 456788999995543321 0 0111111 1134555542111 1444457788888887643 2210
Q ss_pred CCCCcccCCCCCCCEEEEecCcceEEEEecCCcEEEee
Q 011775 86 GEIPEPFPLPTEASIVKAAAGWAHCVAVTEGGEVYTWG 123 (477)
Q Consensus 86 ~~~p~~v~~~~~~~i~~Ia~G~~h~~~Lt~~G~vy~wG 123 (477)
..+. .....+..++......+.-..++.++.|-
T Consensus 183 ----~~~~-~h~~~v~~~s~~~~~l~sgs~d~~i~~~d 215 (420)
T 4gga_A 183 ----RNMT-SHSARVGSLSWNSYILSSGSRSGHIHHHD 215 (420)
T ss_dssp ----EEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred ----EEEe-CCCCceEEEeeCCCEEEEEeCCCceeEee
Confidence 0111 11235666665555555556677777775
No 55
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=41.18 E-value=1.9e+02 Score=25.66 Aligned_cols=28 Identities=14% Similarity=0.022 Sum_probs=21.8
Q ss_pred cEEEEEeCCCeEEEEecCCcEEEEeCCC
Q 011775 222 RIATVAAGGRHTLALSDIGQVWGWGYGG 249 (477)
Q Consensus 222 ~i~~Ia~G~~h~~aLt~~G~vy~wG~n~ 249 (477)
.|..++...+..++.+.+|.|+.|-...
T Consensus 152 ~v~~~~~~~~~l~~~~~d~~i~i~d~~~ 179 (342)
T 1yfq_A 152 KIFTMDTNSSRLIVGMNNSQVQWFRLPL 179 (342)
T ss_dssp CEEEEEECSSEEEEEESTTEEEEEESSC
T ss_pred ceEEEEecCCcEEEEeCCCeEEEEECCc
Confidence 6777887777777778899999997643
No 56
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=39.60 E-value=2.5e+02 Score=26.57 Aligned_cols=98 Identities=13% Similarity=0.092 Sum_probs=59.5
Q ss_pred EEEEeecCCeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecCCeEEEEEcCCcEEEEeCCCC
Q 011775 302 VKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAFGGNQF 381 (477)
Q Consensus 302 i~~I~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~alt~~G~vy~wG~n~~ 381 (477)
|.+|+. ....+++.+++.|..|=.....+. ...+.. ...+.++.+-....++++.+|.|+.|=...
T Consensus 90 V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~~-----------~~~~~~-~~~v~~i~~~~p~~av~~~dG~L~v~dl~~- 155 (388)
T 1xip_A 90 VIFVCF-HGDQVLVSTRNALYSLDLEELSEF-----------RTVTSF-EKPVFQLKNVNNTLVILNSVNDLSALDLRT- 155 (388)
T ss_dssp EEEEEE-ETTEEEEEESSEEEEEESSSTTCE-----------EEEEEC-SSCEEEEEECSSEEEEEETTSEEEEEETTT-
T ss_pred eeEEEE-CCCEEEEEcCCcEEEEEchhhhcc-----------Ccccee-ecceeeEEecCCCEEEEECCCCEEEEEccC-
Confidence 888888 667777778888988854332211 111111 224566666666678889999999996542
Q ss_pred CCcCCCCCCCcccceeecCCCCCCcceEEEEeCCCeEEEEECCCcEEEE
Q 011775 382 GQLGTGGDQAETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVFCW 430 (477)
Q Consensus 382 gqLG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~al~~~g~vy~w 430 (477)
+++ .+ +. ..|..|+....-.++...||++..|
T Consensus 156 ~~~---------~~--~~------~~Vs~v~WSpkG~~vg~~dg~i~~~ 187 (388)
T 1xip_A 156 KST---------KQ--LA------QNVTSFDVTNSQLAVLLKDRSFQSF 187 (388)
T ss_dssp CCE---------EE--EE------ESEEEEEECSSEEEEEETTSCEEEE
T ss_pred Ccc---------cc--cc------CCceEEEEcCCceEEEEcCCcEEEE
Confidence 111 11 11 2466666665555666677777666
No 57
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=35.25 E-value=2.5e+02 Score=25.23 Aligned_cols=107 Identities=13% Similarity=-0.032 Sum_probs=54.4
Q ss_pred CeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecCC-----eEEEEEcCCcEEEEeCCCCCCc
Q 011775 310 RHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLW-----HTICISSDGDVYAFGGNQFGQL 384 (477)
Q Consensus 310 ~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~-----hs~alt~~G~vy~wG~n~~gqL 384 (477)
...+.-..+|.|+.|-..... ....+..........|..++...+ ..+....+|.|..|-......
T Consensus 173 ~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~- 243 (379)
T 3jrp_A 173 RKFVTGGADNLVKIWKYNSDA--------QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG- 243 (379)
T ss_dssp CEEEEEETTSCEEEEEEETTT--------TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS-
T ss_pred CEEEEEeCCCeEEEEEecCCC--------cceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc-
Confidence 455566788999999543210 011111111112336777777654 344455689999997543110
Q ss_pred CCCCCCCcccceeecCCCCCCcceEEEEeCCC--eEEEEECCCcEEEEECC
Q 011775 385 GTGGDQAETLPRLLDAPSLENVHSKSVSCGAR--HTAVIADDGKVFCWGWN 433 (477)
Q Consensus 385 G~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~--hs~al~~~g~vy~wG~n 433 (477)
......... ......|..++.... ..++-..+|.|+.|=.+
T Consensus 244 -------~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 244 -------PWKKTLLKE-EKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp -------CCEEEESSS-SCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred -------cceeeeecc-ccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 001111111 012234666665443 34445689999999654
No 58
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=33.26 E-value=4.2e+02 Score=27.22 Aligned_cols=108 Identities=13% Similarity=0.005 Sum_probs=53.4
Q ss_pred EEEEeecCC--eEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecC---CeEEEEEcCCcEEEE
Q 011775 302 VKGIACGGR--HSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGL---WHTICISSDGDVYAF 376 (477)
Q Consensus 302 i~~I~~G~~--~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~---~hs~alt~~G~vy~w 376 (477)
|..++...+ +.+.-..+|.|..|-.... ..+..........|..++... ...+....+|.|+.|
T Consensus 100 v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~-----------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vw 168 (814)
T 3mkq_A 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENN-----------WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168 (814)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEEGGGT-----------SEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred EEEEEEeCCCCEEEEEcCCCEEEEEECCCC-----------ceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 555544332 4444567888888853211 011111111223577777654 344445678999999
Q ss_pred eCCCCCCcCCCCCCCcccceeecCCCCCCcceEEEEe----CCCeEEEEECCCcEEEEECC
Q 011775 377 GGNQFGQLGTGGDQAETLPRLLDAPSLENVHSKSVSC----GARHTAVIADDGKVFCWGWN 433 (477)
Q Consensus 377 G~n~~gqLG~~~~~~~~~p~~v~~~~~~~~~i~~i~~----G~~hs~al~~~g~vy~wG~n 433 (477)
-..... ....+... ....+..++. .....++-..+|.|+.|-..
T Consensus 169 d~~~~~-----------~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 216 (814)
T 3mkq_A 169 SLGQST-----------PNFTLTTG--QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ 216 (814)
T ss_dssp ETTCSS-----------CSEEEECC--CTTCCCEEEECCSTTCCEEEEECTTSEEEEEETT
T ss_pred ECCCCc-----------ceeEEecC--CCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 754311 11111111 1122333433 33445555678999999643
No 59
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=32.88 E-value=2.8e+02 Score=25.18 Aligned_cols=177 Identities=11% Similarity=0.047 Sum_probs=90.3
Q ss_pred cCCCCcEEEEEeC-----CCeEEEEecCCcEEEEeCCCCCcccCCCCCccccCCcccCccccccCCCcccccccCccCCC
Q 011775 217 LNPGVRIATVAAG-----GRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSE 291 (477)
Q Consensus 217 ~~~~~~i~~Ia~G-----~~h~~aLt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~ 291 (477)
+.++.+|+.+... ..+.+++|++|.++-.-...+-.. . ........+.
T Consensus 96 l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~-r-------~~G~~~i~L~------------------- 148 (312)
T 1suu_A 96 LGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAV-K-------SRGVIVIKLN------------------- 148 (312)
T ss_dssp CCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC------------CEECBCCC-------------------
T ss_pred CCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhcc-C-------CCcEEEEecC-------------------
Confidence 3345567777654 456888899999998865433100 0 0000100000
Q ss_pred CCCcccCCCcEEEE--eecCCeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceee-cccCCCcEEEEEe--cCCeEEE
Q 011775 292 GPGFRVPGNYVKGI--ACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCV-SSLLGIQIEGVAA--GLWHTIC 366 (477)
Q Consensus 292 ~~~~~~~~~~i~~I--~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v-~~~~~~~i~~i~~--G~~hs~a 366 (477)
.+..++.+ ..+..+.+++|++|.+.-+-.++.-..|.... -.+. ....+..|+.+.. ...+.++
T Consensus 149 ------~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~-----Gv~~i~L~~~d~vv~~~~v~~~~~l~~ 217 (312)
T 1suu_A 149 ------DKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQ-----GVCGMKLKEGDLFVKVLSVKENPYLLI 217 (312)
T ss_dssp ------TTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBC-----CEECCCCCTTCCEEEEEECTTCSEEEE
T ss_pred ------CCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCC-----CeEeEEeCCCCEEEEEEEECCCCeEEE
Confidence 01233333 24567899999999999887665433333211 1111 1113445665543 3456778
Q ss_pred EEcCCcEEEEeCCCCCCcCCCCCCCcccceeecCCCCCCcceEE--EEeCCCeEEEEECCCcEEEEECCCC
Q 011775 367 ISSDGDVYAFGGNQFGQLGTGGDQAETLPRLLDAPSLENVHSKS--VSCGARHTAVIADDGKVFCWGWNKY 435 (477)
Q Consensus 367 lt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~~i~~--i~~G~~hs~al~~~g~vy~wG~n~~ 435 (477)
++++|.+.-.-...+-..+.+..... . +.+.......++. ........++++++|.+.-.-.+..
T Consensus 218 vt~~G~~kr~~~~e~~~~~R~~kGv~-~---~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~~~i 284 (312)
T 1suu_A 218 VSENGYGKRLNMSKISELKRGATGYT-S---YKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGKV 284 (312)
T ss_dssp EETTSEEEEEEGGGSCBCCTTCCCEE-C---SCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEGGGS
T ss_pred EECCCceEEEEHHHhcccCCCCCCEE-e---eEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEcccC
Confidence 88898877666655544443322110 1 1111011123333 2235566677888887766544443
No 60
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=32.81 E-value=2.8e+02 Score=25.16 Aligned_cols=126 Identities=6% Similarity=0.000 Sum_probs=58.7
Q ss_pred EEEEeecCC--e-EEEEecCCCEEEEeecCCCCC-CCC---CCCCcccceeecccCCCcEEEEEecCC--eEEEEEcCCc
Q 011775 302 VKGIACGGR--H-SAVITDAGALLTFGWGLYGQC-GQG---STDDELSPNCVSSLLGIQIEGVAAGLW--HTICISSDGD 372 (477)
Q Consensus 302 i~~I~~G~~--~-~~~lt~~g~vy~wG~n~~gql-G~~---~~~~~~~p~~v~~~~~~~i~~i~~G~~--hs~alt~~G~ 372 (477)
|..++...+ + .+.-..+|.|+.|-....... -.- .......+..........|..++...+ +.++...+|.
T Consensus 189 v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 268 (408)
T 4a11_B 189 ILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR 268 (408)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCe
Confidence 555554433 2 445568899999964322110 000 000000011111112235777776543 4555667899
Q ss_pred EEEEeCCCCCCcCCCCCCCcccceeecCCCCCCcceEEEEeCCCeEEEEECCCcEEEEECCC
Q 011775 373 VYAFGGNQFGQLGTGGDQAETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVFCWGWNK 434 (477)
Q Consensus 373 vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~al~~~g~vy~wG~n~ 434 (477)
|+.|-......+-.-.. ...........+..........++...++.|+.|-...
T Consensus 269 i~vwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~ 323 (408)
T 4a11_B 269 MRLWNSSNGENTLVNYG-------KVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYS 323 (408)
T ss_dssp EEEEETTTCCBCCCCCC-------CCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTT
T ss_pred EEEEECCCCccceeccc-------cccccccccceeEEecCCCceEEEEecCCEEEEEECcC
Confidence 99998654322211000 00000111122333333345556667789999997544
No 61
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=32.70 E-value=2.9e+02 Score=25.16 Aligned_cols=175 Identities=12% Similarity=0.024 Sum_probs=94.4
Q ss_pred EEEeCCCeEEEEecCCcEEEEeCCCCCcccCCCCCccccCCcccCccccccCCCcccccccCccCCCCCCcccCCCcEEE
Q 011775 225 TVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSEGPGFRVPGNYVKG 304 (477)
Q Consensus 225 ~Ia~G~~h~~aLt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 304 (477)
.++.+.++.+++|+.|++|..-....-..+....-. .....+. -.+++.|+.
T Consensus 53 ~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~--~i~~~l~--------------------------l~~~e~i~~ 104 (312)
T 1suu_A 53 LCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQ--NISELIN--------------------------LGDQEEILT 104 (312)
T ss_dssp EEEETTCEEEEEETTSEEEEEEGGGSCC-------C--BGGGTSC--------------------------CCTTCCEEE
T ss_pred EEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCc--ChhhccC--------------------------CCCCCEEEE
Confidence 356678889999999999998654322111111000 0000111 112355666
Q ss_pred Eeec-----CCeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeeccc-CCCcEEEEEe--cCCeEEEEEcCCcEEEE
Q 011775 305 IACG-----GRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSL-LGIQIEGVAA--GLWHTICISSDGDVYAF 376 (477)
Q Consensus 305 I~~G-----~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~-~~~~i~~i~~--G~~hs~alt~~G~vy~w 376 (477)
+... ..+.+++|++|.++-.-..++-... ..-...-.+ .+..++.+.. +..+.+++|++|.++-+
T Consensus 105 ~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r-------~~G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~ 177 (312)
T 1suu_A 105 IKNSKDLTDDAYLLLTTASGKIARFESTDFKAVK-------SRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIF 177 (312)
T ss_dssp EEEESCCCTTCEEEEEETTSEEEEEEGGGGCC-----------CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred EEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccC-------CCcEEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEE
Confidence 6543 4578899999999987654431110 011111111 2345555444 45678889999998888
Q ss_pred eCCCCCCcCCCCCCCcccceeecCCCCCCcceEEEEe--CCCeEEEEECCCcEEEEECCCCCCcCC
Q 011775 377 GGNQFGQLGTGGDQAETLPRLLDAPSLENVHSKSVSC--GARHTAVIADDGKVFCWGWNKYGQLGL 440 (477)
Q Consensus 377 G~n~~gqLG~~~~~~~~~p~~v~~~~~~~~~i~~i~~--G~~hs~al~~~g~vy~wG~n~~gqLG~ 440 (477)
-..+.-.+|.... --..+.+. ++..|+.+.. ...+-++++++|.+...-.+++-..+.
T Consensus 178 ~~~ev~~~gR~~~----Gv~~i~L~--~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R 237 (312)
T 1suu_A 178 NSRDVRLTNRGTQ----GVCGMKLK--EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKR 237 (312)
T ss_dssp EGGGSCBCCTTBC----CEECCCCC--TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred EHHHccccCCCCC----CeEeEEeC--CCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCC
Confidence 7665433333221 11222221 2345666543 345678889999888777666555544
No 62
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A
Probab=32.18 E-value=1.8e+02 Score=22.75 Aligned_cols=105 Identities=13% Similarity=-0.095 Sum_probs=52.5
Q ss_pred EEEEeecCCeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEE-ecCCeEEEEEcCCcEEEEeCCC
Q 011775 302 VKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVA-AGLWHTICISSDGDVYAFGGNQ 380 (477)
Q Consensus 302 i~~I~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~-~G~~hs~alt~~G~vy~wG~n~ 380 (477)
+.--.|...+.+-+..||+|-+-.. ..+...-..+.... ..++.|. .-..+.+++..+|+||+--...
T Consensus 8 ~~~~~~~~g~~L~I~~dG~V~Gt~~----------~~~~~s~l~~~~v~-~G~V~I~g~~sg~yL~m~~~G~v~Gs~~~s 76 (132)
T 3q7x_A 8 VLLRSTETGQFLRINPDGTVDGTRD----------RSDPGIQFQISPEG-NGEVLLRSTETGQFLRINPDGTVDGTRDRS 76 (132)
T ss_dssp EEEEETTTCCEEEECTTSBEEEECC----------TTCGGGCEEEEEEE-TTEEEEEETTTCCEEEECTTSBEEEECC-C
T ss_pred heeeeccCcEEEEECCCCcEEeecC----------CCCCCcEEEEEecc-cCEEEEEEEcccEEEEECCCCCEeeccCCC
Confidence 4444577777888899999986532 11111111111111 1233332 3345668888999999642211
Q ss_pred CCCcCCCCCCCcccceeecCCCCCCcceEEE-EeCCCeEEEEECCCcEEEE
Q 011775 381 FGQLGTGGDQAETLPRLLDAPSLENVHSKSV-SCGARHTAVIADDGKVFCW 430 (477)
Q Consensus 381 ~gqLG~~~~~~~~~p~~v~~~~~~~~~i~~i-~~G~~hs~al~~~g~vy~w 430 (477)
.+...-..+.. .. ..+.| ..-....+|+.++|++|.-
T Consensus 77 ---------~ec~flE~~~~-~~---g~v~ikg~~sg~YLamnk~G~lygs 114 (132)
T 3q7x_A 77 ---------DPGIQFQISPE-GN---GEVLLRSTETGQFLRINPDGTVDGT 114 (132)
T ss_dssp ---------CGGGCEEEEEE-ET---TEEEEEETTTCCEEEECTTSBEEEE
T ss_pred ---------CCceeEEEEee-cC---cEEEEEeccCCeEEEECCCCcCcCC
Confidence 01111111110 11 12222 2333458999999999963
No 63
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=30.65 E-value=3.2e+02 Score=25.06 Aligned_cols=69 Identities=14% Similarity=0.097 Sum_probs=41.7
Q ss_pred ccceEEEEecCCcEEEecCCCCCCCccccCCCCCCCCcccCCCCCCCEEEEecC-----cceEEEEecCCcEEEee
Q 011775 53 GCGFAMAISDSRKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEASIVKAAAG-----WAHCVAVTEGGEVYTWG 123 (477)
Q Consensus 53 ~~~~~~~lt~~G~v~~wG~n~~~gqlg~~~~~~~~~p~~v~~~~~~~i~~Ia~G-----~~h~~~Lt~~G~vy~wG 123 (477)
...+.+++|+.|++|..-... .-..+.. .....+...+.+..+.+|+.+..- ....+++|++|.+--.-
T Consensus 49 t~d~ll~fT~~Gr~~~~~~~e-lp~~~r~-a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~ 122 (323)
T 1wp5_A 49 TKDVLLLFTNKGNYLYCPVHE-LPDIRWK-DLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTE 122 (323)
T ss_dssp TTSEEEEEETTSEEEEEEGGG-SCBCCTT-SCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEECCCEEEEEEHHH-CcCCCCC-CCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeE
Confidence 344788899999999887642 2222110 011122334556667788875443 23578889999877665
No 64
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=30.54 E-value=3.1e+02 Score=24.91 Aligned_cols=72 Identities=8% Similarity=0.060 Sum_probs=38.2
Q ss_pred cccccccccccceEEEEecCCcEEEecCCCCCCCccccCCCCCCCCcccCCCCCCCEEEEecC------c---ceEEEEe
Q 011775 44 SAWRDVCGGGCGFAMAISDSRKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEASIVKAAAG------W---AHCVAVT 114 (477)
Q Consensus 44 ~~i~~v~~g~~~~~~~lt~~G~v~~wG~n~~~gqlg~~~~~~~~~p~~v~~~~~~~i~~Ia~G------~---~h~~~Lt 114 (477)
..|..++-.. .+.+.-..||.|+.|-... +... ........+. .....|..++-. . ...+...
T Consensus 17 ~~i~~~~~~~-~~l~s~~~dg~i~iw~~~~--~~~~----~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s~~ 88 (397)
T 1sq9_A 17 ADIFSVSACN-SFTVSCSGDGYLKVWDNKL--LDNE----NPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVATTS 88 (397)
T ss_dssp SCEEEEEECS-SEEEEEETTSEEEEEESBC--CTTC----CGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred cCeEEEEecC-CeEEEEcCCCEEEEEECCC--cccc----cCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEEEc
Confidence 5666666544 3555667899999998753 2200 0000011111 122345555543 2 3455567
Q ss_pred cCCcEEEee
Q 011775 115 EGGEVYTWG 123 (477)
Q Consensus 115 ~~G~vy~wG 123 (477)
.||.|+.|-
T Consensus 89 ~dg~i~iw~ 97 (397)
T 1sq9_A 89 FSGDLLFYR 97 (397)
T ss_dssp TTSCEEEEE
T ss_pred CCCCEEEEE
Confidence 788999886
No 65
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=30.52 E-value=3.4e+02 Score=25.40 Aligned_cols=79 Identities=9% Similarity=-0.031 Sum_probs=39.2
Q ss_pred cEEEEeecC---CeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccC--CCcEEEEEecCC---eEEEEEcCCc
Q 011775 301 YVKGIACGG---RHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLL--GIQIEGVAAGLW---HTICISSDGD 372 (477)
Q Consensus 301 ~i~~I~~G~---~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~--~~~i~~i~~G~~---hs~alt~~G~ 372 (477)
.|..|+... ...+.-..+|.|..|-....+..-.........|..+.... ...|..++...+ ..+....+|.
T Consensus 323 ~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~ 402 (430)
T 2xyi_A 323 EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNI 402 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSE
T ss_pred CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCC
Confidence 355555533 23444557899999965442211000000000122222222 235777776554 3444567888
Q ss_pred EEEEeCC
Q 011775 373 VYAFGGN 379 (477)
Q Consensus 373 vy~wG~n 379 (477)
|..|-..
T Consensus 403 i~iw~~~ 409 (430)
T 2xyi_A 403 MQVWQMA 409 (430)
T ss_dssp EEEEEEC
T ss_pred EEEeEcc
Confidence 8888754
No 66
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=29.46 E-value=2.9e+02 Score=24.18 Aligned_cols=28 Identities=11% Similarity=-0.051 Sum_probs=20.0
Q ss_pred CcEEEEEeCC----CeEEEEecCCcEEEEeCC
Q 011775 221 VRIATVAAGG----RHTLALSDIGQVWGWGYG 248 (477)
Q Consensus 221 ~~i~~Ia~G~----~h~~aLt~~G~vy~wG~n 248 (477)
..|..|+... .+.+.-..+|.|+.|-..
T Consensus 111 ~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 142 (351)
T 3f3f_A 111 GSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142 (351)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTCEEEEEECS
T ss_pred CceeEEEEcCCCCCcEEEEecCCCcEEEecCC
Confidence 3677777664 356666789999999653
No 67
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=29.24 E-value=1.1e+02 Score=28.03 Aligned_cols=17 Identities=29% Similarity=0.600 Sum_probs=13.1
Q ss_pred CCeEEEEEcCCcEEEEeC
Q 011775 361 LWHTICISSDGDVYAFGG 378 (477)
Q Consensus 361 ~~hs~alt~~G~vy~wG~ 378 (477)
..|++++ .+++||++|-
T Consensus 110 ~~~~~~~-~~~~iyv~GG 126 (357)
T 2uvk_A 110 AGHVTFV-HNGKAYVTGG 126 (357)
T ss_dssp SSEEEEE-ETTEEEEEEC
T ss_pred ccceEEE-ECCEEEEEeC
Confidence 4676666 6789999995
No 68
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=28.57 E-value=2.8e+02 Score=23.83 Aligned_cols=16 Identities=19% Similarity=0.329 Sum_probs=12.3
Q ss_pred eEEEEecCCcEEEecC
Q 011775 56 FAMAISDSRKLITWGS 71 (477)
Q Consensus 56 ~~~~lt~~G~v~~wG~ 71 (477)
++++++.+|++|.-..
T Consensus 18 ~~i~~d~~g~l~v~~~ 33 (299)
T 2z2n_A 18 YGITVSDKGKVWITQH 33 (299)
T ss_dssp EEEEECTTSCEEEEET
T ss_pred cceEECCCCCEEEEec
Confidence 6788888899887554
No 69
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=27.60 E-value=3e+02 Score=23.77 Aligned_cols=15 Identities=20% Similarity=0.264 Sum_probs=8.9
Q ss_pred eEEEEecCCcEEEee
Q 011775 109 HCVAVTEGGEVYTWG 123 (477)
Q Consensus 109 h~~~Lt~~G~vy~wG 123 (477)
+.++++.+|++|.-.
T Consensus 124 ~~i~~~~~g~l~v~~ 138 (286)
T 1q7f_A 124 RGVTVDNKGRIIVVE 138 (286)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred eEEEEeCCCCEEEEE
Confidence 455566666666654
No 70
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=26.35 E-value=2e+02 Score=25.80 Aligned_cols=16 Identities=31% Similarity=0.727 Sum_probs=12.1
Q ss_pred CeEEEEEcCCcEEEEeC
Q 011775 362 WHTICISSDGDVYAFGG 378 (477)
Q Consensus 362 ~hs~alt~~G~vy~wG~ 378 (477)
.|++++ .+++||++|-
T Consensus 151 ~~~~~~-~~~~iyv~GG 166 (318)
T 2woz_A 151 GHNVIS-HNGMIYCLGG 166 (318)
T ss_dssp SCEEEE-ETTEEEEECC
T ss_pred ccEEEE-ECCEEEEEcC
Confidence 566666 5789999995
No 71
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=26.31 E-value=3.1e+02 Score=23.61 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=10.6
Q ss_pred eEEEEEcCCcEEEEeCC
Q 011775 363 HTICISSDGDVYAFGGN 379 (477)
Q Consensus 363 hs~alt~~G~vy~wG~n 379 (477)
..++++.+|++|+-...
T Consensus 210 ~~i~~d~~G~l~v~~~~ 226 (286)
T 1q7f_A 210 IGVGINSNGEILIADNH 226 (286)
T ss_dssp EEEEECTTCCEEEEECS
T ss_pred cEEEECCCCCEEEEeCC
Confidence 35666677777766543
No 72
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=25.26 E-value=4e+02 Score=24.39 Aligned_cols=127 Identities=12% Similarity=-0.025 Sum_probs=65.6
Q ss_pred EeecCCeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeeccc-CCCcEEEEEec--CC-eEEEEEcCCcEEEEeCCC
Q 011775 305 IACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSL-LGIQIEGVAAG--LW-HTICISSDGDVYAFGGNQ 380 (477)
Q Consensus 305 I~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~-~~~~i~~i~~G--~~-hs~alt~~G~vy~wG~n~ 380 (477)
+..+.++.+++|++|+++-+-.++.-..|.. ....+.-.+ .+..|+.+..= .. ..+.+|++|...-.-...
T Consensus 151 ~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~-----a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 151 LTDGMNELFLVTHNGYALWFDESEVSIVGVR-----AAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EECSCSEEEEEETTSEEEEEEGGGSCBCCSS-----CCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EeCCCCEEEEEeCCCcEEEEEHHHCcccCCC-----CcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 3346788999999999998877654333331 122222222 34456665431 12 566677777543333333
Q ss_pred CCCcCCCCCCCcccceeecCCCCCCcceEE--EEeCCCeEEEEECCCcEEEEECCCCCCcCC
Q 011775 381 FGQLGTGGDQAETLPRLLDAPSLENVHSKS--VSCGARHTAVIADDGKVFCWGWNKYGQLGL 440 (477)
Q Consensus 381 ~gqLG~~~~~~~~~p~~v~~~~~~~~~i~~--i~~G~~hs~al~~~g~vy~wG~n~~gqLG~ 440 (477)
+-..+.+... ...+...+ ..+..++. +..+....++++++|.+.-.-.++--..|.
T Consensus 226 ~~~~~Rg~kG-v~~~~~~~---~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~i~~~~R 283 (323)
T 1wp5_A 226 FEKATRAKRG-VVILRELK---ANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGDIRFSDR 283 (323)
T ss_dssp SCCCCTTSCC-EECSCCCS---SSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGGSCBCCS
T ss_pred ccccCCCCCC-EECeeecC---CCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhhcCccCc
Confidence 2221111110 11111111 11223443 234567888999999988776665555554
No 73
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=23.92 E-value=4.1e+02 Score=24.17 Aligned_cols=230 Identities=10% Similarity=0.036 Sum_probs=0.0
Q ss_pred eEEEEecCCcEEEecCCCCCCCccccCCCC---CCCCcccCCCCCCCEEEEecC---cceEEEEecCCcEEEeeCCCCCC
Q 011775 56 FAMAISDSRKLITWGSTDDLGQSYVTSGKH---GEIPEPFPLPTEASIVKAAAG---WAHCVAVTEGGEVYTWGWKECVP 129 (477)
Q Consensus 56 ~~~~lt~~G~v~~wG~n~~~gqlg~~~~~~---~~~p~~v~~~~~~~i~~Ia~G---~~h~~~Lt~~G~vy~wG~n~~gq 129 (477)
.+++...+|+.++.|..+ |.+-.-.... ...+..........|..|+.. ....+.-..||.|+.|-....
T Consensus 71 ~~~~~s~~~~~l~~~~~d--g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-- 146 (416)
T 2pm9_A 71 NDLDWSHNNKIIAGALDN--GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKC-- 146 (416)
T ss_dssp EEEEECSSSSCEEEEESS--SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTT--
T ss_pred EEEEECCCCCeEEEEccC--CeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCC--
Q ss_pred CCCccCCCCCCcccccchhhcccccccccccCCcccccccCCCCCCCCCCCCCcCCCceeeeehhhcccccCCCCCCcc-
Q 011775 130 SGRVFGDLSTGTGLDKDVFERQSSFLTEQVSPRSQVSRSSGGTSSGTDGRGSGEEGSKRRRISLAKQTAESSSSGDENL- 208 (477)
Q Consensus 130 lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 208 (477)
.
T Consensus 147 ------------------------------------------------------------------------------~~ 148 (416)
T 2pm9_A 147 ------------------------------------------------------------------------------TE 148 (416)
T ss_dssp ------------------------------------------------------------------------------SS
T ss_pred ------------------------------------------------------------------------------cc
Q ss_pred -----cccceEEecCCCCcEEEEEeCCC---eEEEEecCCcEEEEeCCCCCcccCCCCCccccCCcccCccc-----ccc
Q 011775 209 -----SAFPCLVTLNPGVRIATVAAGGR---HTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIE-----SSY 275 (477)
Q Consensus 209 -----~~~P~~i~~~~~~~i~~Ia~G~~---h~~aLt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~-----~~~ 275 (477)
..............|..++.... ..+.-..+|.|..|-. ........+.... .
T Consensus 149 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~------------~~~~~~~~~~~~~~~~~~~-- 214 (416)
T 2pm9_A 149 SPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDL------------KAKKEVIHLSYTSPNSGIK-- 214 (416)
T ss_dssp CTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEET------------TTTEEEEEECCCCCSSCCC--
T ss_pred ccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEEC------------CCCCcceEEeccccccccC--
Q ss_pred CCCcccccccCccCCCCCCcccCCCcEEEEeecCC---eEEEEecCC---CEEEEeecCCCCCCCCCCCCcccceeecc-
Q 011775 276 GKDRSAALSRGSVNSEGPGFRVPGNYVKGIACGGR---HSAVITDAG---ALLTFGWGLYGQCGQGSTDDELSPNCVSS- 348 (477)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~G~~---~~~~lt~~g---~vy~wG~n~~gqlG~~~~~~~~~p~~v~~- 348 (477)
..|..++...+ ..+.-..++ .|+.| +......|.....
T Consensus 215 ------------------------~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~-----------d~~~~~~~~~~~~~ 259 (416)
T 2pm9_A 215 ------------------------QQLSVVEWHPKNSTRVATATGSDNDPSILIW-----------DLRNANTPLQTLNQ 259 (416)
T ss_dssp ------------------------CCEEEEEECSSCTTEEEEEECCSSSCCCCEE-----------ETTSTTSCSBCCCS
T ss_pred ------------------------CceEEEEECCCCCCEEEEEECCCCCceEEEE-----------eCCCCCCCcEEeec
Q ss_pred cCCCcEEEEEe---cCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeecCCCCCCcceEEEEeCC---CeEEEEE
Q 011775 349 LLGIQIEGVAA---GLWHTICISSDGDVYAFGGNQFGQLGTGGDQAETLPRLLDAPSLENVHSKSVSCGA---RHTAVIA 422 (477)
Q Consensus 349 ~~~~~i~~i~~---G~~hs~alt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~---~hs~al~ 422 (477)
.....|..++. .....+.-..+|.|+.|=... ......+. .....|..++... ...+.-.
T Consensus 260 ~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~-----------~~~~~~~~---~~~~~v~~~~~s~~~~~~l~s~~ 325 (416)
T 2pm9_A 260 GHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES-----------AEQLSQFP---ARGNWCFKTKFAPEAPDLFACAS 325 (416)
T ss_dssp CCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS-----------CCEEEEEE---CSSSCCCCEEECTTCTTEEEECC
T ss_pred CccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC-----------Cccceeec---CCCCceEEEEECCCCCCEEEEEe
Q ss_pred CCCcEEEE
Q 011775 423 DDGKVFCW 430 (477)
Q Consensus 423 ~~g~vy~w 430 (477)
.||.|..|
T Consensus 326 ~d~~i~iw 333 (416)
T 2pm9_A 326 FDNKIEVQ 333 (416)
T ss_dssp SSSEEEEE
T ss_pred cCCcEEEE
No 74
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=23.31 E-value=4.1e+02 Score=23.95 Aligned_cols=118 Identities=9% Similarity=0.044 Sum_probs=58.1
Q ss_pred CcEEEEeecCC--eEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecCCeEEEEEcCCcEEEEe
Q 011775 300 NYVKGIACGGR--HSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAFG 377 (477)
Q Consensus 300 ~~i~~I~~G~~--~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~alt~~G~vy~wG 377 (477)
..|..++...+ +.+....+|.|+.|-......+-.... ...........+..........++...++.|+.|-
T Consensus 246 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d 320 (408)
T 4a11_B 246 GKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYG-----KVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYT 320 (408)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCC-----CCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEE
T ss_pred CceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccc-----cccccccccceeEEecCCCceEEEEecCCEEEEEE
Confidence 34666666433 566667899999996543221110000 00000011112222223334455667788999997
Q ss_pred CCCCCCcCCCCCCCcccceeecCCCCCCcceEEEEeCC--CeEEEEECCCcEEEEECCCCC
Q 011775 378 GNQFGQLGTGGDQAETLPRLLDAPSLENVHSKSVSCGA--RHTAVIADDGKVFCWGWNKYG 436 (477)
Q Consensus 378 ~n~~gqLG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~--~hs~al~~~g~vy~wG~n~~g 436 (477)
...... ...+. .....|..++... .+.+.-..||.|+.|=....-
T Consensus 321 ~~~~~~-----------~~~~~---~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 321 VYSGEQ-----------ITMLK---GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp TTTCCE-----------EEEEC---CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred CcCCcc-----------eeeec---cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 643211 11111 1123466665543 445556679999999766543
No 75
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=21.78 E-value=4.2e+02 Score=23.43 Aligned_cols=68 Identities=10% Similarity=-0.006 Sum_probs=34.7
Q ss_pred cEEEEEec--CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeecCCCCCCcceEEEEeCCC--eEEEEECCCcEE
Q 011775 353 QIEGVAAG--LWHTICISSDGDVYAFGGNQFGQLGTGGDQAETLPRLLDAPSLENVHSKSVSCGAR--HTAVIADDGKVF 428 (477)
Q Consensus 353 ~i~~i~~G--~~hs~alt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~--hs~al~~~g~vy 428 (477)
.+..++.. ....++-..+|.|+.|-....++ ....+. .....|..++.... ..++...+|.|+
T Consensus 177 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 243 (369)
T 3zwl_B 177 AATVAGWSTKGKYIIAGHKDGKISKYDVSNNYE----------YVDSID---LHEKSISDMQFSPDLTYFITSSRDTNSF 243 (369)
T ss_dssp CEEEEEECGGGCEEEEEETTSEEEEEETTTTTE----------EEEEEE---CCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcE----------eEEEEe---cCCCceeEEEECCCCCEEEEecCCceEE
Confidence 45445443 33455556788899887543111 111111 11234666655433 344445678888
Q ss_pred EEECC
Q 011775 429 CWGWN 433 (477)
Q Consensus 429 ~wG~n 433 (477)
.|-..
T Consensus 244 v~d~~ 248 (369)
T 3zwl_B 244 LVDVS 248 (369)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 88644
No 76
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=20.57 E-value=4.4e+02 Score=23.25 Aligned_cols=60 Identities=12% Similarity=-0.017 Sum_probs=32.7
Q ss_pred CCeEEEEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecCC--eEEEEEcCCcEEEEeCC
Q 011775 309 GRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLW--HTICISSDGDVYAFGGN 379 (477)
Q Consensus 309 ~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~--hs~alt~~G~vy~wG~n 379 (477)
..+.++-..+|.|+.|-.... ..+..........|..++...+ ..++...+|.|+.|=..
T Consensus 187 ~~~l~~~~~dg~i~i~d~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~ 248 (369)
T 3zwl_B 187 GKYIIAGHKDGKISKYDVSNN-----------YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVS 248 (369)
T ss_dssp GCEEEEEETTSEEEEEETTTT-----------TEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCEEEEEcCCCEEEEEECCCC-----------cEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECC
Confidence 345555677888888843211 1112111122336777766433 34445568889988654
Done!