Your job contains 1 sequence.
>011776
MELYGRNNTSRNGSQSGHQPQWSPTDQATGLEESMWQSDLKVNESYPQRHGVPDCVFYMR
TGVCGYGDRCRYNHPRNRAAVEAAVRATGDYPDRPGEPICQFYLKTGTCKFGASCKFHHP
KHSGGSMSHVPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQPAGTSLPASAPQF
YPPVQSPTVPMAEQYGGASTSLRVARPPLLASSYVQGAYGPVLFSPGVVPFSGWNPYSAS
VSPVLSPGAQPAVGATSLYGVTQISSSMPALAGLYPSLPSSAGPSSSGQMEQSFPERPGE
PECQYFLKTGDCKFGSSCRFHHPRDRVVPRTNCALSPLGLPLRPGAQPCTFYLQNGRCKF
GATCKFDHPMGAMRYSPSASSLIETPVAPYPVGSLLSTLAPASSSSDLRPELISGSKKDS
LLSRIPSSGNTSSSSVGLIFSQTGSVPLSDLQLSGQSSVPLSSSRSARQGVEVRRLS
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 011776
(477 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2043368 - symbol:AT2G47850 species:3702 "Arabi... 1569 4.0e-161 1
TAIR|locus:2182988 - symbol:AT5G18550 species:3702 "Arabi... 1116 4.1e-113 1
TAIR|locus:2081066 - symbol:AT3G06410 species:3702 "Arabi... 1085 7.8e-110 1
TAIR|locus:2171407 - symbol:ZFN3 "zinc finger nuclease 3"... 500 1.5e-81 2
TAIR|locus:2075477 - symbol:ZFN1 "zinc finger protein 1" ... 781 1.3e-77 1
TAIR|locus:2101170 - symbol:AT3G48440 species:3702 "Arabi... 555 1.1e-53 1
TAIR|locus:2087775 - symbol:HUA1 "ENHANCER OF AG-4 1" spe... 537 9.2e-52 1
TAIR|locus:2010562 - symbol:AT1G04990 species:3702 "Arabi... 480 1.0e-45 1
TAIR|locus:1006230718 - symbol:AT1G48195 species:3702 "Ar... 247 1.0e-20 1
ASPGD|ASPL0000062209 - symbol:AN0298 species:162425 "Emer... 97 1.1e-07 2
ZFIN|ZDB-GENE-990806-20 - symbol:cth1 "cth1" species:7955... 101 8.2e-06 2
TAIR|locus:2013763 - symbol:AT1G29570 species:3702 "Arabi... 123 7.5e-05 1
UNIPROTKB|Q9H000 - symbol:MKRN2 "Probable E3 ubiquitin-pr... 84 0.00011 3
UNIPROTKB|F1M3I4 - symbol:Mkrn2 "Protein Mkrn2" species:1... 83 0.00014 3
RGD|1310618 - symbol:Mkrn2 "makorin, ring finger protein,... 82 0.00018 3
UNIPROTKB|B7Z7B0 - symbol:CPSF4 "Cleavage and polyadenyla... 113 0.00022 1
RGD|1559581 - symbol:Zfp36l3 "zinc finger protein 36, C3H... 108 0.00022 2
UNIPROTKB|O19137 - symbol:CPSF4 "Cleavage and polyadenyla... 116 0.00024 1
UNIPROTKB|G3V789 - symbol:Mkrn1 "Protein Mkrn1" species:1... 91 0.00025 3
UNIPROTKB|F1SRP7 - symbol:MKRN1 "Uncharacterized protein"... 90 0.00026 3
ZFIN|ZDB-GENE-020213-1 - symbol:mkrn1 "makorin, ring fing... 83 0.00028 3
MGI|MGI:1914277 - symbol:Mkrn2 "makorin, ring finger prot... 82 0.00029 3
RGD|620440 - symbol:Cpsf4 "cleavage and polyadenylation s... 115 0.00031 1
UNIPROTKB|P26651 - symbol:ZFP36 "Tristetraprolin" species... 116 0.00047 1
UNIPROTKB|E2REH2 - symbol:MKRN2 "Uncharacterized protein"... 78 0.00050 3
UNIPROTKB|D4A905 - symbol:Cpsf4 "Cleavage and polyadenyla... 113 0.00052 1
UNIPROTKB|Q6GLD9 - symbol:mkrn2 "Probable E3 ubiquitin-pr... 91 0.00057 3
MGI|MGI:1859353 - symbol:Mkrn1 "makorin, ring finger prot... 91 0.00063 3
UNIPROTKB|F1MF12 - symbol:MKRN1 "Uncharacterized protein"... 90 0.00064 3
UNIPROTKB|E2RRA5 - symbol:MKRN1 "Uncharacterized protein"... 91 0.00066 3
ZFIN|ZDB-GENE-020213-2 - symbol:mkrn2 "makorin, ring fing... 82 0.00087 3
UNIPROTKB|F1NI93 - symbol:MKRN2 "Uncharacterized protein"... 72 0.00092 3
>TAIR|locus:2043368 [details] [associations]
symbol:AT2G47850 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:AC005309 EMBL:BT030391
EMBL:BT004106 IPI:IPI00519400 PIR:C84920 RefSeq:NP_001078078.1
RefSeq:NP_182306.2 UniGene:At.21006 ProteinModelPortal:Q84W91
SMR:Q84W91 PaxDb:Q84W91 PRIDE:Q84W91 EnsemblPlants:AT2G47850.1
EnsemblPlants:AT2G47850.3 GeneID:819397 KEGG:ath:AT2G47850
TAIR:At2g47850 eggNOG:NOG312935 HOGENOM:HOG000237733
InParanoid:Q84W91 OMA:RYGVACK PhylomeDB:Q84W91
ProtClustDB:CLSN2680305 Genevestigator:Q84W91 GermOnline:AT2G47850
Uniprot:Q84W91
Length = 468
Score = 1569 (557.4 bits), Expect = 4.0e-161, P = 4.0e-161
Identities = 294/477 (61%), Positives = 338/477 (70%)
Query: 3 LYGRNNTSRNGSQSGHQPQWSPTDQATGLEESMWQSDLKVNESYPQRHGVPDCVFYMRTG 62
+Y RN NGSQS P W+P D TGL+ESMW+ L ++SYP+R G PDC +YMRTG
Sbjct: 1 MYARN-PPLNGSQSAQAPDWTPADADTGLQESMWRLGLG-SDSYPERPGAPDCAYYMRTG 58
Query: 63 VCGYGDRCRYNHPRNXXXXXXXXXXTGDYPDRPGEPICQFYLKTGTCKFGASCKFHHPKH 122
VCGYG+RCRYNHPR+ TG YP+R GEP CQFYLKTGTCKFGASCKFHHPK+
Sbjct: 59 VCGYGNRCRYNHPRDRASVEATVRATGQYPERFGEPPCQFYLKTGTCKFGASCKFHHPKN 118
Query: 123 SGGSMSHVPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQPAGTSLP---ASAPQ 179
+GGSMSHVPLNIYGYP+R G+ ECSYYLKTGQCKFGITCKFHHPQPAGT++P ASAPQ
Sbjct: 119 AGGSMSHVPLNIYGYPVREGDNECSYYLKTGQCKFGITCKFHHPQPAGTTVPPPPASAPQ 178
Query: 180 FYPPVQSPTVPMAEQYGGASTSLRVARPPLLASSYVQGAYGPVLFSPGVVPFSGWNPYSA 239
FYP VQS M +QYGG S+SLRVAR LL SY+QGAYGP+L +PGVVP GW+PYSA
Sbjct: 179 FYPSVQSL---MPDQYGGPSSSLRVART-LLPGSYMQGAYGPMLLTPGVVPIPGWSPYSA 234
Query: 240 SVSPVLSPGAQPAVGATSLYGVTQISSSMPALAXXXXXXXXXXXXXXXXQMEQSFPERPG 299
VSP LSPGAQ AVGATSLYGVTQ++S+ P+L Q EQ+FPERPG
Sbjct: 235 PVSPALSPGAQHAVGATSLYGVTQLTSTTPSLPGVYPSLSSPTGVI---QKEQAFPERPG 291
Query: 300 EPECQYFLKTGDCKFGSSCRFHHPRDRVVPRTNCALSPLGLPLRPGAQPCTFYLQNGRCK 359
EPECQY+LKTGDCKFG+SC+FHHPRDRV PR NC LSP+GLPLRPG Q CTFY+QNG CK
Sbjct: 292 EPECQYYLKTGDCKFGTSCKFHHPRDRVPPRANCVLSPIGLPLRPGVQRCTFYVQNGFCK 351
Query: 360 FGATCKFDHPMGAMRYSPSASSLIETPVAPYPVGXXXXXXXXXXXXXXXRPELISGSKKD 419
FG+TCKFDHPMG +RY+PSASSL + PVAPYPV ELI+G KD
Sbjct: 352 FGSTCKFDHPMGTIRYNPSASSLADAPVAPYPVSSLLGALAAAPSSSST--ELIAGGAKD 409
Query: 420 SLLXXXXXXXXXXXXXVGLIFSQTG-SVPLSDXXXXXXXXXXXXXXXXXXXGVEVRR 475
+ + GLIFSQ+G S+P S+ G E+RR
Sbjct: 410 AYMTGVPTSRSTSNISAGLIFSQSGGSIPFSELQLSSQSSLPLTGSRITRQGREIRR 466
>TAIR|locus:2182988 [details] [associations]
symbol:AT5G18550 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 eggNOG:NOG312935
HOGENOM:HOG000237733 ProtClustDB:CLSN2681554 EMBL:AC069328
EMBL:BT010886 EMBL:AK230175 IPI:IPI00533261 RefSeq:NP_197356.2
UniGene:At.22535 ProteinModelPortal:Q6NPN3 SMR:Q6NPN3 STRING:Q6NPN3
PaxDb:Q6NPN3 PRIDE:Q6NPN3 EnsemblPlants:AT5G18550.1 GeneID:831973
KEGG:ath:AT5G18550 TAIR:At5g18550 InParanoid:Q6NPN3 OMA:GSQPCAY
PhylomeDB:Q6NPN3 Genevestigator:Q6NPN3 GermOnline:AT5G18550
Uniprot:Q6NPN3
Length = 465
Score = 1116 (397.9 bits), Expect = 4.1e-113, P = 4.1e-113
Identities = 209/410 (50%), Positives = 271/410 (66%)
Query: 1 MELYGRNNTSRNGSQSGHQPQWSPTDQATGLEESMWQSDLKVN----ESYPQRHGVPDCV 56
ME YG + S H+ WS TG+E SMW+ L+ E++P+R PDC+
Sbjct: 1 MERYGGAGEDESRSDPSHE--WSAQGTETGIEASMWRLGLRGGGGGGETFPERPDEPDCI 58
Query: 57 FYMRTGVCGYGDRCRYNHPRNXX-XXXXXXXXTGDYPDRPGEPICQFYLKTGTCKFGASC 115
+Y+RTGVCGYG RCR+NHPRN G++P+R G+P+CQ +++TGTCKFGASC
Sbjct: 59 YYLRTGVCGYGSRCRFNHPRNRAPVLGGLRTEAGEFPERMGQPVCQHFMRTGTCKFGASC 118
Query: 116 KFHHPKHSGG--SMSHVPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQPAGTSL 173
K+HHP+ GG S++ V LN G+PLRPGEKECSY+++TGQCKFG TC++HHP P G
Sbjct: 119 KYHHPRQGGGGDSVTPVSLNYMGFPLRPGEKECSYFMRTGQCKFGSTCRYHHPVPPGVQA 178
Query: 174 PA-------SA-PQFYPPVQSPTVPMAEQYGGASTSLRVARPPLLASSYVQG--AYGPVL 223
P+ SA P YP +QS TVP ++QYG + +ARP LL SYVQ YG ++
Sbjct: 179 PSQQQQQQLSAGPTMYPSLQSQTVPSSQQYG-----VVLARPQLLPGSYVQSPYGYGQMV 233
Query: 224 FSPGVVPFSGWNPYSASVSPVLSPGAQPAVGATSLYGVTQISSSMPALAXXXXXXXXXXX 283
PG+VP+SGWNPY ASVS + SPG QP++G +S+YG+T +S S PA
Sbjct: 234 LPPGMVPYSGWNPYQASVSAMPSPGTQPSMGTSSVYGITPLSPSAPAYQSGPSSTGVS-- 291
Query: 284 XXXXXQMEQSFPERPGEPECQYFLKTGDCKFGSSCRFHHPRDRVVPRTNCALSPLGLPLR 343
EQ+FP+RP +PECQYF++TGDCKFG+SCRFHHP + P + LS +GLPLR
Sbjct: 292 -----NKEQTFPQRPEQPECQYFMRTGDCKFGTSCRFHHPMEAASPEAS-TLSHIGLPLR 345
Query: 344 PGAQPCTFYLQNGRCKFGATCKFDHPMGA--MRYSPSASSLIETPVAPYP 391
PGA PCT + Q+G CKFG CKFDH +G+ + YSPS SSL + PVAPYP
Sbjct: 346 PGAVPCTHFAQHGICKFGPACKFDHSLGSSSLSYSPSPSSLTDMPVAPYP 395
>TAIR|locus:2081066 [details] [associations]
symbol:AT3G06410 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:AC011623
eggNOG:NOG312935 HOGENOM:HOG000237733 EMBL:AK230312 EMBL:AK230438
IPI:IPI00535086 RefSeq:NP_187292.2 UniGene:At.27771
ProteinModelPortal:Q9SQU4 SMR:Q9SQU4 EnsemblPlants:AT3G06410.1
GeneID:819815 KEGG:ath:AT3G06410 TAIR:At3g06410 InParanoid:Q9SQU4
OMA:SSQQYGL PhylomeDB:Q9SQU4 ProtClustDB:CLSN2681554
Genevestigator:Q9SQU4 GermOnline:AT3G06410 Uniprot:Q9SQU4
Length = 462
Score = 1085 (387.0 bits), Expect = 7.8e-110, P = 7.8e-110
Identities = 206/434 (47%), Positives = 265/434 (61%)
Query: 1 MELYGRNNTSRNGSQSGHQPQWSPTDQATGLEESMWQSDLKVN-------ESYPQRHGVP 53
ME YGR GS+S +W+ T +E MW+ L ESYP+R P
Sbjct: 1 MERYGR--PGEEGSRSDPSLEWTSHGGETAVEAPMWRLGLSGGGGGGGGGESYPERPDEP 58
Query: 54 DCVFYMRTGVCGYGDRCRYNHPRNXXXXXXXXXX-TGDYPDRPGEPICQFYLKTGTCKFG 112
DC++Y+RTGVCGYG RCR+NHPR+ G P+R G P+CQ +++TGTCKFG
Sbjct: 59 DCIYYLRTGVCGYGSRCRFNHPRDRGAVIGGVRGEAGALPERMGHPVCQHFMRTGTCKFG 118
Query: 113 ASCKFHHPKHSGG--SMSHVPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQPAG 170
ASCK+HHP+ GG S++ V L+ GYPLRPGEKECSYYL+TGQCKFG+TC+F+HP P
Sbjct: 119 ASCKYHHPRQGGGGGSVAPVSLSYLGYPLRPGEKECSYYLRTGQCKFGLTCRFNHPVPLA 178
Query: 171 TSLPASAPQ------------FYPPVQSPTVPMAEQYGGASTSLRVARPPLLASSYVQGA 218
P PQ YP +QS ++P ++QYG L + RP L SY+Q
Sbjct: 179 VQGPPQQPQQQQPQPQPQLQTIYPTLQSQSIPSSQQYG-----LVLTRPSFLTGSYLQSP 233
Query: 219 YGP-VLFSPGVVPFSGWNPYSASVSPVLSPGAQPAVGATSLYGVTQISSSMPALAXXXXX 277
YGP ++ PG+VP+SGWNPY AS+S + SPG QP++G++S+YG+T +S S A
Sbjct: 234 YGPPMVLPPGMVPYSGWNPYQASLSAMPSPGTQPSIGSSSIYGLTPLSPSATAYTGTYQS 293
Query: 278 XXXXXXXXXXXQMEQSFPERPGEPECQYFLKTGDCKFGSSCRFHHPRDRVVPRTNCALSP 337
+ FP+RP +PECQYF++TGDCKFGSSCR+HHP D V P+T LS
Sbjct: 294 VPSSNSTS------KEFPQRPDQPECQYFMRTGDCKFGSSCRYHHPVDAVPPKTGIVLSS 347
Query: 338 LGLPLRPGAQPCTFYLQNGRCKFGATCKFDHPMGA-MRYSPSASSLIETPVAPYPVGXXX 396
+GLPLRPG CT + Q+G CKFG CKFDH M + + YSPSASSL + PVAPYP+G
Sbjct: 348 IGLPLRPGVAQCTHFAQHGICKFGPACKFDHSMSSSLSYSPSASSLTDMPVAPYPIGSSS 407
Query: 397 XXXXXXXXXXXXRP 410
P
Sbjct: 408 LSGSSAPVSSSNEP 421
>TAIR|locus:2171407 [details] [associations]
symbol:ZFN3 "zinc finger nuclease 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=TAS] [GO:0004518 "nuclease activity" evidence=TAS]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:AB005242 GO:GO:0004518
HOGENOM:HOG000237733 EMBL:AF138872 EMBL:AY084634 EMBL:AY128342
EMBL:BT000014 EMBL:BX831982 IPI:IPI00516322 IPI:IPI00528450
IPI:IPI00528912 RefSeq:NP_568332.2 RefSeq:NP_851041.1
RefSeq:NP_974790.1 UniGene:At.21711 ProteinModelPortal:Q8L7N8
SMR:Q8L7N8 EnsemblPlants:AT5G16540.1 GeneID:831516
KEGG:ath:AT5G16540 GeneFarm:4900 TAIR:At5g16540 eggNOG:NOG281021
InParanoid:Q8L7N8 OMA:SAGNQGM PhylomeDB:Q8L7N8
ProtClustDB:CLSN2690167 Genevestigator:Q8L7N8 Uniprot:Q8L7N8
Length = 375
Score = 500 (181.1 bits), Expect = 1.5e-81, Sum P(2) = 1.5e-81
Identities = 98/206 (47%), Positives = 127/206 (61%)
Query: 32 EESMWQ----SD--LKVNESYPQRHGVPDCVFYMRTGVCGYGDRCRYNHPRNXXXXXXXX 85
+ +MWQ SD + V+ SYP+RHG PDC +Y+RTG+C +G CR+NHP +
Sbjct: 19 QNAMWQMNLGSDDTMGVDGSYPERHGEPDCAYYIRTGLCRFGSTCRFNHPHDRKLVIATA 78
Query: 86 XXTGDYPDRPGEPICQFYLKTGTCKFGASCKFHHPKHSGGSMSHVPLNIYGYPLRPGEKE 145
G+YP+R G+P C+FYLKTGTCKFG +CKFHHP++ G V +N+ YPLRP E +
Sbjct: 79 RIKGEYPERIGQPECEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPNEDD 138
Query: 146 CSYYLKTGQCKFGITCKFHHPQPAGTSLPASAPQFYPPVQSPTVPMAEQ--YGGASTSLR 203
CSY+L+ GQCKFG TCKF+HPQ T+L S PV S + Q Y + TS
Sbjct: 139 CSYFLRIGQCKFGGTCKFNHPQTQSTNLMVSVRG--SPVYSALQSLTGQPSYSWSRTSF- 195
Query: 204 VARPPLLA--SSYVQGAYGPVLFSPG 227
VA PP L S + G+ G LFS G
Sbjct: 196 VANPPRLQDPSGFASGSQGG-LFSSG 220
Score = 337 (123.7 bits), Expect = 1.5e-81, Sum P(2) = 1.5e-81
Identities = 60/103 (58%), Positives = 71/103 (68%)
Query: 291 EQSFPERPGEPECQYFLKTGDCKFGSSCRFHHPRDRVVPRTNCALSPLGLPLRPGAQPCT 350
E FPERPG+PECQ+++KTGDCKFG+ C+FHHPRDR P +C LS +GLPLRPG C
Sbjct: 237 ENVFPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLCV 296
Query: 351 FYLQNGRCKFGATCKFDHPMGAMRY-----SPSASSLIETPVA 388
FY + G CKFG +CKFDHPM Y SPS SS + A
Sbjct: 297 FYSRYGICKFGPSCKFDHPMRVFTYNNNTASPSPSSSLHQETA 339
Score = 255 (94.8 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 45/101 (44%), Positives = 70/101 (69%)
Query: 289 QMEQSFPERPGEPECQYFLKTGDCKFGSSCRFHHPRDRVVPRTNCALSPLGLPLRPGAQP 348
+++ +PER G+PEC+++LKTG CKFG +C+FHHPR++ + +++ L PLRP
Sbjct: 79 RIKGEYPERIGQPECEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPNEDD 138
Query: 349 CTFYLQNGRCKFGATCKFDHP-------MGAMRYSPSASSL 382
C+++L+ G+CKFG TCKF+HP M ++R SP S+L
Sbjct: 139 CSYFLRIGQCKFGGTCKFNHPQTQSTNLMVSVRGSPVYSAL 179
Score = 248 (92.4 bits), Expect = 3.0e-19, P = 3.0e-19
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 91 YPDRPGEPICQFYLKTGTCKFGASCKFHHPKHSGGSMSHVPLNIYGYPLRPGEKECSYYL 150
+P+RPG+P CQFY+KTG CKFG CKFHHP+ L+ G PLRPGE C +Y
Sbjct: 240 FPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLCVFYS 299
Query: 151 KTGQCKFGITCKFHHP 166
+ G CKFG +CKF HP
Sbjct: 300 RYGICKFGPSCKFDHP 315
Score = 240 (89.5 bits), Expect = 3.1e-18, P = 3.1e-18
Identities = 44/101 (43%), Positives = 61/101 (60%)
Query: 290 MEQSFPERPGEPECQYFLKTGDCKFGSSCRFHHPRDRVVPRTNCALSPLGLPLRPGAQPC 349
++ S+PER GEP+C Y+++TG C+FGS+CRF+HP DR + + P R G C
Sbjct: 35 VDGSYPERHGEPDCAYYIRTGLCRFGSTCRFNHPHDRKLVIATARIKG-EYPERIGQPEC 93
Query: 350 TFYLQNGRCKFGATCKFDHPMGAMRYSPSAS-SLIETPVAP 389
FYL+ G CKFG TCKF HP S S +++ P+ P
Sbjct: 94 EFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRP 134
Score = 209 (78.6 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 36/76 (47%), Positives = 48/76 (63%)
Query: 46 YPQRHGVPDCVFYMRTGVCGYGDRCRYNHPRNXXXXXXXXXXTG-DYPDRPGEPICQFYL 104
+P+R G P+C FYM+TG C +G C+++HPR+ + P RPGEP+C FY
Sbjct: 240 FPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLCVFYS 299
Query: 105 KTGTCKFGASCKFHHP 120
+ G CKFG SCKF HP
Sbjct: 300 RYGICKFGPSCKFDHP 315
Score = 153 (58.9 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 30/59 (50%), Positives = 35/59 (59%)
Query: 122 HSGGSMSHVPLNIYG------YPLRPGEKECSYYLKTGQCKFGITCKFHHPQPAGTSLP 174
HSG S VPL Y +P RPG+ EC +Y+KTG CKFG CKFHHP+ T P
Sbjct: 222 HSGNS---VPLGFYALPRENVFPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPP 277
>TAIR|locus:2075477 [details] [associations]
symbol:ZFN1 "zinc finger protein 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=TAS] [GO:0004518 "nuclease activity" evidence=TAS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0010313 "phytochrome
binding" evidence=IPI] [GO:0017148 "negative regulation of
translation" evidence=IMP] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IPI] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005829 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0017148 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0048027 GO:GO:0004518 HOGENOM:HOG000237733
EMBL:AF138743 EMBL:AC018363 EMBL:AK117978 EMBL:BT025966
IPI:IPI00539955 PIR:T48874 RefSeq:NP_566183.1 UniGene:At.23706
ProteinModelPortal:Q8GXX7 SMR:Q8GXX7 STRING:Q8GXX7 PaxDb:Q8GXX7
PRIDE:Q8GXX7 EnsemblPlants:AT3G02830.1 GeneID:821230
KEGG:ath:AT3G02830 GeneFarm:4898 TAIR:At3g02830 eggNOG:NOG329662
InParanoid:Q8GXX7 OMA:SSDDQQR PhylomeDB:Q8GXX7
ProtClustDB:CLSN2917075 Genevestigator:Q8GXX7 GermOnline:AT3G02830
Uniprot:Q8GXX7
Length = 397
Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
Identities = 156/360 (43%), Positives = 204/360 (56%)
Query: 32 EESMWQSDLKVNE-----SYPQRHGVPDCVFYMRTGVCGYGDRCRYNHPRNXXXXXXXXX 86
+++MWQ +L +E SYP+R G PDC +Y+RTG+C +G CR+NHPR+
Sbjct: 18 QDAMWQMNLSSDETMETGSYPERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRELVIATAR 77
Query: 87 XTGDYPDRPGEPICQFYLKTGTCKFGASCKFHHPKHSGGSMSHVPLNIYGYPLRPGEKEC 146
G+YP+R G+P C++YLKTGTCKFG +CKFHHP++ G V LN+ GYPLR E +C
Sbjct: 78 MRGEYPERIGQPECEYYLKTGTCKFGVTCKFHHPRNKAGIAGRVSLNMLGYPLRSNEVDC 137
Query: 147 SYYLKTGQCKFGITCKFHHPQPAGTSL--PASAPQFYPPVQSPTVPMAEQYGGASTSLRV 204
+Y+L+TG CKFG TCKF+HPQP T++ P S Q YP ++ + S R
Sbjct: 138 AYFLRTGHCKFGGTCKFNHPQPQPTNMMVPTSGQQSYPWSRASFI----------ASPRW 187
Query: 205 ARPPLLASSYVQGAYGPVLFSPGVVPFSGWNPYSASVSPVLSPGAQPAVGATSLYGVTQI 264
P AS + PV G P+SG SVSP + Q +
Sbjct: 188 QDPSSYASLIMPQGVVPV---QGWNPYSG---QLGSVSPSGTGNDQNYRNLQQNETIESG 241
Query: 265 SSSMPALAXXXXXXXXXXXXXXXXQMEQSFPERPGEPECQYFLKTGDCKFGSSCRFHHPR 324
S S + + E FPERPG+PECQ+++KTGDCKFG+ C+FHHPR
Sbjct: 242 SQSQGSFSGYNPGSSVPLGGYYALPRENVFPERPGQPECQFYMKTGDCKFGTVCKFHHPR 301
Query: 325 DRVVPRTNCALSPLGLPLRPGAQPCTFYLQNGRCKFGATCKFDHPMGAMRYSPSASSLIE 384
DR P +C LS +GLPLRPG C FY + G CKFG +CKFDHPM Y +AS E
Sbjct: 302 DRQAPPPDCLLSSIGLPLRPGEPLCVFYTRYGICKFGPSCKFDHPMRVFTYDNTASETDE 361
>TAIR|locus:2101170 [details] [associations]
symbol:AT3G48440 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:AL049659
HOGENOM:HOG000237733 EMBL:BT033139 IPI:IPI00517303 PIR:T06698
RefSeq:NP_190414.1 UniGene:At.50258 ProteinModelPortal:Q9STM4
SMR:Q9STM4 PaxDb:Q9STM4 PRIDE:Q9STM4 EnsemblPlants:AT3G48440.1
GeneID:824003 KEGG:ath:AT3G48440 TAIR:At3g48440 eggNOG:NOG288127
InParanoid:Q9STM4 OMA:PEWNGYQ PhylomeDB:Q9STM4
ProtClustDB:CLSN2719348 Genevestigator:Q9STM4 GermOnline:AT3G48440
Uniprot:Q9STM4
Length = 448
Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
Identities = 131/356 (36%), Positives = 175/356 (49%)
Query: 43 NES---YPQRHGVPDCVFYMRTGVCGYGDRCRYNHPRNXXXXXXXXXXTGDYPDRPGEP- 98
NES YP R G DC FYMRTG C +G C++NHP + D G+
Sbjct: 101 NESENVYPVRPGAEDCSFYMRTGSCKFGSSCKFNHPLARKFQIARDNKVREKEDDGGKLG 160
Query: 99 --ICQFYLKTGTCKFGASCKFHHPKHSGGSMSHVPLNIYGYPLRPGEKECSYYLKTGQCK 156
C++Y +TG CK+G +C+F+H G S LN G PLRPGE EC YY++ G CK
Sbjct: 161 LIDCKYYFRTGGCKYGETCRFNHTIPKSGLASAPELNFLGLPLRPGEVECPYYMRNGSCK 220
Query: 157 FGITCKFHHPQPAGTSLPASAPQFYPP--VQSPTVPMAEQYGGASTSLRVARPPLLASSY 214
+G CKF+HP P T +P F V T + +STS R S +
Sbjct: 221 YGAECKFNHPDPT-TIGGTDSPSFRGNNGVSIGTFSPKATFQASSTSWSSPRHVNGTSPF 279
Query: 215 VQGAYGPVLFSP--GVVPFSG-WNPYSASVSPVLSPGAQPAVGATSLYGVTQISSSMPAL 271
+ PV+ S GV + WN Y ASV +S GV S S L
Sbjct: 280 I-----PVMLSQTHGVTSQNPEWNGYQASVY-------------SSERGV--FSPSTTYL 319
Query: 272 AXXXXXXXXXXXXXXXXQME-QSFPERPGEPECQYFLKTGDCKFGSSCRFHHPRDRVVPR 330
QM + FPERP +PEC Y++KTGDCKF +C++HHP++R+
Sbjct: 320 MNNSSAETSMLLSQYRHQMPAEEFPERPDQPECSYYMKTGDCKFKFNCKYHHPKNRLPKL 379
Query: 331 TNCALSPLGLPLRPGAQPCTFYLQNGRCKFGATCKFDHPMGAMRYSPSASSLIETP 386
AL+ GLPLRP CT+Y + G CKFG C+FDH + + S+ +++E P
Sbjct: 380 PPYALNDKGLPLRPDQNICTYYSRYGICKFGPACRFDHSVQPPYSTESSQAIVEPP 435
>TAIR|locus:2087775 [details] [associations]
symbol:HUA1 "ENHANCER OF AG-4 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA;TAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0001709 "cell fate
determination" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISS;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0016607
GO:GO:0008270 GO:GO:0006397 GO:GO:0003723 GO:GO:0009908
EMBL:AB024033 GO:GO:0001709 EMBL:AY024357 EMBL:AC069474
EMBL:AK229145 IPI:IPI00536814 RefSeq:NP_187874.2 UniGene:At.5670
ProteinModelPortal:Q941Q3 SMR:Q941Q3 STRING:Q941Q3 PaxDb:Q941Q3
PRIDE:Q941Q3 EnsemblPlants:AT3G12680.1 GeneID:820448
KEGG:ath:AT3G12680 TAIR:At3g12680 eggNOG:NOG250655
HOGENOM:HOG000078745 InParanoid:Q941Q3 OMA:LGAHNTI PhylomeDB:Q941Q3
ProtClustDB:CLSN2690537 Genevestigator:Q941Q3 Uniprot:Q941Q3
Length = 524
Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
Identities = 128/373 (34%), Positives = 177/373 (47%)
Query: 17 GHQPQWSPTDQATGLEESMWQSDLKVNESYPQRHGVPDCVFYMRTGVCGYGDRCRYNHP- 75
G W TD T + S L + YPQR G DC YM+T C +G+ CR++HP
Sbjct: 145 GQTEAWYTTDYFTKRPKLESTSHLPI---YPQRAGEKDCTHYMQTRTCKFGESCRFDHPI 201
Query: 76 -----RNXXXXXXXXXXTGDYPDRPGEPICQFYLKTGTCKFGASCKFHHPKHSGGSMSHV 130
+YP+RPGEP C +Y+KT CK+G+ CKF+HP+
Sbjct: 202 WVPEGGIPDWKEAPVVPNEEYPERPGEPDCPYYIKTQRCKYGSKCKFNHPREEAAVSVET 261
Query: 131 PLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQPAGTSLPASAPQFYPPVQSPTVP 190
++ P RP E C++Y+KTG+CKFG++CKFHHP+ LP+S+ V + P
Sbjct: 262 QDSL---PERPSEPMCTFYMKTGKCKFGLSCKFHHPKDI--QLPSSSQDIGSSVGLTSEP 316
Query: 191 MAEQYGGASTSLRVARPPLLASSYVQGAYGPVLFSPGVVPF---SGWNPYSASVS---PV 244
A+ + V P L Y PV PF +G Y A+ P
Sbjct: 317 ------DATNNPHVTFTPAL---YHNSKGLPVRSGEVDCPFYLKTGSCKYGATCRYNHPE 367
Query: 245 LSPGAQPAVGAT-SLYGVTQISSSMPALAXXXXXXXXXXXXXXXXQMEQSFPERPGEPEC 303
+ A G SL + ++ L + ++P+RPG+ EC
Sbjct: 368 RTAFIPQAAGVNYSLVSSNTANLNL-GLVTPATSFYQTLTQPTLGVISATYPQRPGQSEC 426
Query: 304 QYFLKTGDCKFGSSCRFHHPRDRVVPRT-------NCALSPLGLPLRPGAQPCTFYLQNG 356
Y++KTG+CKFG C+FHHP DR+ T N LS G P R GA C +Y++ G
Sbjct: 427 DYYMKTGECKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAGYPRREGALNCPYYMKTG 486
Query: 357 RCKFGATCKFDHP 369
CK+GATCKFDHP
Sbjct: 487 TCKYGATCKFDHP 499
Score = 252 (93.8 bits), Expect = 4.9e-19, P = 4.9e-19
Identities = 44/85 (51%), Positives = 54/85 (63%)
Query: 91 YPDRPGEPICQFYLKTGTCKFGASCKFHHPKHSGGSMS-------HVPLNIYGYPLRPGE 143
YP RPG+ C +Y+KTG CKFG CKFHHP +M+ +V L++ GYP R G
Sbjct: 417 YPQRPGQSECDYYMKTGECKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAGYPRREGA 476
Query: 144 KECSYYLKTGQCKFGITCKFHHPQP 168
C YY+KTG CK+G TCKF HP P
Sbjct: 477 LNCPYYMKTGTCKYGATCKFDHPPP 501
>TAIR|locus:2010562 [details] [associations]
symbol:AT1G04990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=RCA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003723 GO:GO:0090305 EMBL:AC004809
GO:GO:0004518 HOGENOM:HOG000237733 EMBL:AY048253 EMBL:AY113065
IPI:IPI00522113 PIR:F86183 RefSeq:NP_563725.1 RefSeq:NP_973759.1
UniGene:At.21743 ProteinModelPortal:Q94AD9 SMR:Q94AD9 PaxDb:Q94AD9
PRIDE:Q94AD9 EnsemblPlants:AT1G04990.1 EnsemblPlants:AT1G04990.2
GeneID:839351 KEGG:ath:AT1G04990 TAIR:At1g04990 eggNOG:NOG290936
InParanoid:Q94AD9 OMA:THQRISP PhylomeDB:Q94AD9
ProtClustDB:CLSN2687681 Genevestigator:Q94AD9 GermOnline:AT1G04990
Uniprot:Q94AD9
Length = 404
Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
Identities = 122/343 (35%), Positives = 163/343 (47%)
Query: 40 LKVNES-------YPQRHGVPDCVFYMRTGVCGYGDRCRYNHPRNXXXXXXXXXXTGDYP 92
+KVNE+ YP R G DC FY+RTG+CGYG CRYNHP + + P
Sbjct: 31 MKVNETGVEELNPYPDRPGERDCQFYLRTGLCGYGSSCRYNHPTHLPQDVAYYKE--ELP 88
Query: 93 DRPGEPICQFYLKTGTCKFGASCKFHHPKHSGGSMSHVPLNIYGYPLRPGEKECSYYLKT 152
+R G+P C+++LKTG CK+G +CK+HHPK G+ V N+ G P+R GEK C YYL+T
Sbjct: 89 ERIGQPDCEYFLKTGACKYGPTCKYHHPKDRNGAQP-VMFNVIGLPMRLGEKPCPYYLRT 147
Query: 153 GQCKFGITCKFHHPQPAGTSLPASAPQFYPPVQSPTVPMAEQYGGASTSLRVARPPLLAS 212
G C+FG+ CKFHHPQP A +P + A ST + RP +
Sbjct: 148 GTCRFGVACKFHHPQPDNGHSTAYGMSSFPAAD---LRYASGLTMMSTYGTLPRPQV-PQ 203
Query: 213 SYVQGAYGPVLFSP--GVVPFSGWNPYSASVSPVLSPGAQPAVGATSLY---------GV 261
SYV P+L SP G +P GW PY A+ + + + QP +S G+
Sbjct: 204 SYV-----PILVSPSQGFLPPQGWAPYMAASNSMYNVKNQPYYSGSSASMAMAVALNRGL 258
Query: 262 TQISSSMPALAXXXXXXX--------XXXXXXXXXQMEQSF------PERPGEPECQYFL 307
++ SS P Q S P RPG+P C F
Sbjct: 259 SE-SSDQPECRFFMNTGTCKYGDDCKYSHPGVRISQPPPSLINPFVLPARPGQPACGNFR 317
Query: 308 KTGDCKFGSSCRFHHPRDRVVPRTNCALSPLGLPLRPGAQPCT 350
G CKFG +C+F HP ++P ++ LP P A P T
Sbjct: 318 SYGFCKFGPNCKFDHP---MLPYPGLTMAT-SLPT-PFASPVT 355
Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 98/316 (31%), Positives = 148/316 (46%)
Query: 91 YPDRPGEPICQFYLKTGTCKFGASCKFHHPKHSGGSMSHVPLNIYGYPLRPGEKECSYYL 150
YPDRPGE CQFYL+TG C +G+SC+++HP H +++ + P R G+ +C Y+L
Sbjct: 44 YPDRPGERDCQFYLRTGLCGYGSSCRYNHPTHLPQDVAYYKEEL---PERIGQPDCEYFL 100
Query: 151 KTGQCKFGITCKFHHPQPAGTSLPASAPQFYPPVQ--SPTVPMAEQYG----GASTSLRV 204
KTG CK+G TCK+HHP+ + P P++ P + G G +
Sbjct: 101 KTGACKYGPTCKYHHPKDRNGAQPVMFNVIGLPMRLGEKPCPYYLRTGTCRFGVACKFHH 160
Query: 205 ARPPL-LASSYVQGAY--GPVLFSPGVVPFS--GWNP---YSASVSPVLSPGAQPAVGAT 256
+P +++Y ++ + ++ G+ S G P S P+L +Q +
Sbjct: 161 PQPDNGHSTAYGMSSFPAADLRYASGLTMMSTYGTLPRPQVPQSYVPILVSPSQGFLPPQ 220
Query: 257 SLYGVTQISSSMPALAXXXXXXXXXXXXXXXXQMEQSFPERPGEPECQYFLKTGDCKFGS 316
S+SM + + + E +PEC++F+ TG CK+G
Sbjct: 221 GWAPYMAASNSMYNVKNQPYYSGSSASMAMAVALNRGLSESSDQPECRFFMNTGTCKYGD 280
Query: 317 SCRFHHPRDRVVPRTNCALSPLGLPLRPGAQPCTFYLQNGRCKFGATCKFDHPMGAMRYS 376
C++ HP R+ ++P LP RPG C + G CKFG CKFDHPM
Sbjct: 281 DCKYSHPGVRISQPPPSLINPFVLPARPGQPACGNFRSYGFCKFGPNCKFDHPMLPYPGL 340
Query: 377 PSASSLIETPVAPYPV 392
A+SL TP A PV
Sbjct: 341 TMATSL-PTPFAS-PV 354
>TAIR|locus:1006230718 [details] [associations]
symbol:AT1G48195 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 EMBL:AC023673 EMBL:BX818039 IPI:IPI00522286
RefSeq:NP_973988.1 UniGene:At.38465 UniGene:At.63148
ProteinModelPortal:Q3ECU8 SMR:Q3ECU8 EnsemblPlants:AT1G48195.1
GeneID:2745816 KEGG:ath:AT1G48195 TAIR:At1g48195 eggNOG:NOG304278
HOGENOM:HOG000107451 InParanoid:Q3ECU8 OMA:AICPHYS PhylomeDB:Q3ECU8
ProtClustDB:CLSN2681286 Genevestigator:Q3ECU8 Uniprot:Q3ECU8
Length = 82
Score = 247 (92.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 40/78 (51%), Positives = 52/78 (66%)
Query: 291 EQSFPERPGEPECQYFLKTGDCKFGSSCRFHHPRDRVVPRTNCALSPLGLPLRPGAQPCT 350
E+ FPERPGEPEC Y+L+TG+C +C++HHP++ C L+ GLPLRPG C
Sbjct: 3 EEKFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAICP 62
Query: 351 FYLQNGRCKFGATCKFDH 368
Y + G C+ G TCKFDH
Sbjct: 63 HYSRFGICRSGPTCKFDH 80
Score = 218 (81.8 bits), Expect = 1.9e-17, P = 1.9e-17
Identities = 37/75 (49%), Positives = 48/75 (64%)
Query: 91 YPDRPGEPICQFYLKTGTCKFGASCKFHHPKHSGGSMSHVPLNIYGYPLRPGEKECSYYL 150
+P+RPGEP C +YL+TG C +CK+HHPK+ S LN G PLRPG+ C +Y
Sbjct: 6 FPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAICPHYS 65
Query: 151 KTGQCKFGITCKFHH 165
+ G C+ G TCKF H
Sbjct: 66 RFGICRSGPTCKFDH 80
Score = 173 (66.0 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 30/77 (38%), Positives = 42/77 (54%)
Query: 44 ESYPQRHGVPDCVFYMRTGVCGYGDRCRYNHPRNXXXXXXXXXXTGD-YPDRPGEPICQF 102
E +P+R G P+C +Y+RTG C C+Y+HP+N P RPG+ IC
Sbjct: 4 EKFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAICPH 63
Query: 103 YLKTGTCKFGASCKFHH 119
Y + G C+ G +CKF H
Sbjct: 64 YSRFGICRSGPTCKFDH 80
Score = 123 (48.4 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 21/38 (55%), Positives = 25/38 (65%)
Query: 137 YPLRPGEKECSYYLKTGQCKFGITCKFHHPQPAGTSLP 174
+P RPGE ECSYYL+TG C CK+HHP+ S P
Sbjct: 6 FPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEP 43
>ASPGD|ASPL0000062209 [details] [associations]
symbol:AN0298 species:162425 "Emericella nidulans"
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0005634 EMBL:BN001308
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 GO:GO:0003723
eggNOG:COG5084 EMBL:AACD01000006 HOGENOM:HOG000212457 KO:K14404
RefSeq:XP_657902.1 ProteinModelPortal:Q5BGN2 STRING:Q5BGN2
EnsemblFungi:CADANIAT00002417 GeneID:2876077 KEGG:ani:AN0298.2
OMA:DPDRPVC OrthoDB:EOG4PG99D Uniprot:Q5BGN2
Length = 254
Score = 97 (39.2 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 25/76 (32%), Positives = 34/76 (44%)
Query: 301 PECQYFLKTGDCKFGSSCRFHHPRD--RVVPRTN-----CALSPLGLPLRPGAQPCTFYL 353
PECQ F ++G C G C + H R+ R+ P + C L PL + C +Y+
Sbjct: 118 PECQSFSRSGYCPNGDDCLYQHVREQARLPPCEHYDQGFCPLGPLCAKRHVRRRLCPYYV 177
Query: 354 QNGRCKFGATCKFDHP 369
G C G C HP
Sbjct: 178 A-GFCPEGPNCANAHP 192
Score = 92 (37.4 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 21/68 (30%), Positives = 32/68 (47%)
Query: 98 PICQFYLKTGTCKFGASCKFHHPKHSGGSMSHVPLNIYGYPLRPGEKECSYYLKTGQCKF 157
P+C+ Y + G C G +C HP S + S + G C ++LK G CK
Sbjct: 45 PVCKAYSE-GHCPLGPACPDRHPTPSRVTTSTTTASGLAPSTTHGSLVCKHFLK-GLCKK 102
Query: 158 GITCKFHH 165
G+ C++ H
Sbjct: 103 GMKCEYLH 110
Score = 91 (37.1 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 22/69 (31%), Positives = 28/69 (40%)
Query: 52 VPDCVFYMRTGVCGYGDRCRYNHPRNXXXXXXXXXXTGDYPDRP-GEPICQFYLKTGTCK 110
VP C Y G C G C HP +G P G +C+ +LK G CK
Sbjct: 44 VPVCKAYSE-GHCPLGPACPDRHPTPSRVTTSTTTASGLAPSTTHGSLVCKHFLK-GLCK 101
Query: 111 FGASCKFHH 119
G C++ H
Sbjct: 102 KGMKCEYLH 110
Score = 57 (25.1 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 15/44 (34%), Positives = 18/44 (40%)
Query: 128 SHVPL--NIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQPA 169
S VP YG+ L C Y + G C G C HP P+
Sbjct: 27 SFVPFLRKSYGFGLVTDVPVCKAYSE-GHCPLGPACPDRHPTPS 69
>ZFIN|ZDB-GENE-990806-20 [details] [associations]
symbol:cth1 "cth1" species:7955 "Danio rerio"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 ZFIN:ZDB-GENE-990806-20 GO:GO:0008270
GO:GO:0003676 HSSP:P22893 GeneTree:ENSGT00530000063262
EMBL:AL954709 EMBL:BC107984 EMBL:AJ249490 IPI:IPI00509714
RefSeq:NP_571014.1 UniGene:Dr.621 SMR:Q9PU62 STRING:Q9PU62
Ensembl:ENSDART00000101601 GeneID:30114 KEGG:dre:30114 CTD:30114
HOGENOM:HOG000153347 HOVERGEN:HBG078993 InParanoid:Q9PU62 KO:K13056
OMA:FTFSSQH NextBio:20806593 Uniprot:Q9PU62
Length = 319
Score = 101 (40.6 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 24/67 (35%), Positives = 30/67 (44%)
Query: 99 ICQFYLKTGTCKFGASCKFHHPKHSGGSMSHVPLNIYGYPLRPGEKECSYYLKTGQCKFG 158
+C Y +TGTCK+ C+F H H HVP +P E C Y G C +G
Sbjct: 64 LCSRYAETGTCKYAERCQFAHGLHD----LHVPSR---HPKYKTEL-CRTYHTAGYCVYG 115
Query: 159 ITCKFHH 165
C F H
Sbjct: 116 TRCLFVH 122
Score = 73 (30.8 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 21/79 (26%), Positives = 27/79 (34%)
Query: 295 PERPGEPECQYFLKTGDCKFGSSCRFHHPR-----DRVVPRTNCALSPLGLPLRPGAQPC 349
P R P C+ F G C FG+ C F H D +P C
Sbjct: 132 PRRRNVP-CRTFRAFGVCPFGNRCHFLHVEGGSESDGAEEEQTWQPPSQSQEWKPRGALC 190
Query: 350 TFYLQNGRCKFGATCKFDH 368
+ G C +G C+F H
Sbjct: 191 RTFSAFGFCLYGTRCRFQH 209
Score = 59 (25.8 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 292 QSFPERPGEPECQYFLKTGDCKFGSSCRFHH 322
QS +P C+ F G C +G+ CRF H
Sbjct: 179 QSQEWKPRGALCRTFSAFGFCLYGTRCRFQH 209
>TAIR|locus:2013763 [details] [associations]
symbol:AT1G29570 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0048445 "carpel morphogenesis" evidence=RCA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 EMBL:AC068667 IPI:IPI00519526 PIR:G86418
RefSeq:NP_174250.1 UniGene:At.51822 EnsemblPlants:AT1G29570.1
GeneID:839834 KEGG:ath:AT1G29570 TAIR:At1g29570 eggNOG:NOG325481
HOGENOM:HOG000107458 OMA:HIMDRNV PhylomeDB:Q9C7P4
ProtClustDB:CLSN2914472 Genevestigator:Q9C7P4 Uniprot:Q9C7P4
Length = 321
Score = 123 (48.4 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 21/40 (52%), Positives = 30/40 (75%)
Query: 289 QMEQS--FPERPGEPECQYFLKTGDCKFGSSCRFHHPRDR 326
+M QS +P RPG+ +CQ++LK G C++ SSCRF+HP R
Sbjct: 45 RMRQSSPYPVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQR 84
Score = 122 (48.0 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 137 YPLRPGEKECSYYLKTGQCKFGITCKFHHPQPAGTSLP 174
YP+RPG+K+C +YLK G C++ +C+F+HP LP
Sbjct: 52 YPVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQRPQELP 89
Score = 118 (46.6 bits), Expect = 0.00027, P = 0.00027
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 74 HPRNXXXXXXXXXXTGDYPDRPGEPICQFYLKTGTCKFGASCKFHHP 120
+P++ + YP RPG+ CQFYLK G C++ +SC+F+HP
Sbjct: 35 NPQDQIQSKERMRQSSPYPVRPGKKDCQFYLKNGLCRYRSSCRFNHP 81
>UNIPROTKB|Q9H000 [details] [associations]
symbol:MKRN2 "Probable E3 ubiquitin-protein ligase
makorin-2" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0005622 "intracellular"
evidence=IDA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 UniPathway:UPA00143
Prosite:PS00518 EMBL:CH471055 GO:GO:0046872 GO:GO:0016874
GO:GO:0008270 GO:GO:0003676 GO:GO:0016567 GO:GO:0005622
Gene3D:3.30.40.10 InterPro:IPR013083 eggNOG:COG5084
InterPro:IPR017907 InterPro:IPR026290 PANTHER:PTHR11224
HOGENOM:HOG000252976 KO:K15687 HOVERGEN:HBG066965 CTD:23609
OrthoDB:EOG4229K2 InterPro:IPR026293 PANTHER:PTHR11224:SF17
EMBL:AF302084 EMBL:AF277170 EMBL:AF277164 EMBL:AF277165
EMBL:AF277166 EMBL:AF277167 EMBL:AF277168 EMBL:AF277169
EMBL:AF161555 EMBL:AK091318 EMBL:AC018500 EMBL:BC001799
EMBL:BC015715 EMBL:AL834512 IPI:IPI00396406 RefSeq:NP_054879.3
UniGene:Hs.591666 ProteinModelPortal:Q9H000 SMR:Q9H000
IntAct:Q9H000 STRING:Q9H000 PhosphoSite:Q9H000 DMDM:45645205
PRIDE:Q9H000 DNASU:23609 Ensembl:ENST00000170447 GeneID:23609
KEGG:hsa:23609 UCSC:uc003bxd.3 GeneCards:GC03P012598 HGNC:HGNC:7113
HPA:HPA037559 HPA:HPA037560 MIM:608426 neXtProt:NX_Q9H000
PharmGKB:PA30832 InParanoid:Q9H000 OMA:KGYCAYG ChiTaRS:MKRN2
GenomeRNAi:23609 NextBio:46312 ArrayExpress:Q9H000 Bgee:Q9H000
CleanEx:HS_MKRN2 Genevestigator:Q9H000 GermOnline:ENSG00000075975
Uniprot:Q9H000
Length = 416
Score = 84 (34.6 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 29/102 (28%), Positives = 43/102 (42%)
Query: 58 YMRTGVCGYGDRCRYNHPRNXXXXXXXXXXTGDYPDRPGEPICQFYLKTGTCKFGASCKF 117
Y GVC G +C ++H D + IC++Y K G C +G C++
Sbjct: 10 YFMHGVCREGSQCLFSH---------------DLANSKPSTICKYYQK-GYCAYGTRCRY 53
Query: 118 HHPKHSG------GSMSH-VPLNIYGYPLRPGEKECSYYLKT 152
H + S G+M+H VP + P P E S +KT
Sbjct: 54 DHTRPSAAAGGAVGTMAHSVPSPAFHSPHPPSEVTASI-VKT 94
Score = 70 (29.7 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 289 QMEQSFPERPGEPECQYFLK-TGDCKFGSSCRFHH 322
++ ++F + G+ C+YF + G C FGS C + H
Sbjct: 313 ELIEAFKQGMGKKACKYFEQGKGTCPFGSKCLYRH 347
Score = 51 (23.0 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 143 EKECSYYLKTGQCKFGITCKFHH 165
E++ Y G+C+FG C + H
Sbjct: 167 EQQLCPYAAAGECRFGDACVYLH 189
>UNIPROTKB|F1M3I4 [details] [associations]
symbol:Mkrn2 "Protein Mkrn2" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 RGD:1310618
Prosite:PS00518 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907
InterPro:IPR026290 PANTHER:PTHR11224 InterPro:IPR026293
PANTHER:PTHR11224:SF17 IPI:IPI00566412 Ensembl:ENSRNOT00000044916
ArrayExpress:F1M3I4 Uniprot:F1M3I4
Length = 417
Score = 83 (34.3 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 23/79 (29%), Positives = 35/79 (44%)
Query: 56 VFYMRTGVCGYGDRCRYNHPRNXXXXXXXXXXTGDYPDRPGEPICQFYLKTGTCKFGASC 115
V Y GVC G +C ++H D + IC++Y K G C +GA C
Sbjct: 8 VRYFMHGVCREGSQCLFSH---------------DLANSKPSTICKYYQK-GYCAYGARC 51
Query: 116 KFHH---PKHSGGSMSHVP 131
++ H P +GG++ P
Sbjct: 52 RYDHTKPPAAAGGAVGPAP 70
Score = 70 (29.7 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 289 QMEQSFPERPGEPECQYFLK-TGDCKFGSSCRFHH 322
++ ++F + G+ C+YF + G C FGS C + H
Sbjct: 314 ELIEAFKQGMGKKACKYFEQGKGTCPFGSKCLYRH 348
Score = 51 (23.0 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 143 EKECSYYLKTGQCKFGITCKFHH 165
E++ Y G+C+FG C + H
Sbjct: 168 EQQLCPYAAAGECRFGDACVYLH 190
>RGD|1310618 [details] [associations]
symbol:Mkrn2 "makorin, ring finger protein, 2" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA;ISO]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 RGD:1310618
Prosite:PS00518 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
GO:GO:0005622 Gene3D:3.30.40.10 InterPro:IPR013083 eggNOG:COG5084
InterPro:IPR017907 InterPro:IPR026290 PANTHER:PTHR11224
HOGENOM:HOG000252976 KO:K15687 GeneTree:ENSGT00390000014093
HOVERGEN:HBG066965 CTD:23609 OrthoDB:EOG4229K2 InterPro:IPR026293
PANTHER:PTHR11224:SF17 OMA:KGYCAYG EMBL:BC083870 IPI:IPI00372043
RefSeq:NP_001008315.1 UniGene:Rn.129070 Ensembl:ENSRNOT00000013146
GeneID:297525 KEGG:rno:297525 UCSC:RGD:1310618 InParanoid:Q5XI23
NextBio:642384 Genevestigator:Q5XI23 Uniprot:Q5XI23
Length = 417
Score = 82 (33.9 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 22/77 (28%), Positives = 34/77 (44%)
Query: 58 YMRTGVCGYGDRCRYNHPRNXXXXXXXXXXTGDYPDRPGEPICQFYLKTGTCKFGASCKF 117
Y GVC G +C ++H D + IC++Y K G C +GA C++
Sbjct: 10 YFMHGVCREGSQCLFSH---------------DLANSKPSTICKYYQK-GYCAYGARCRY 53
Query: 118 HH---PKHSGGSMSHVP 131
H P +GG++ P
Sbjct: 54 DHTKPPAAAGGAVGPAP 70
Score = 70 (29.7 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 289 QMEQSFPERPGEPECQYFLK-TGDCKFGSSCRFHH 322
++ ++F + G+ C+YF + G C FGS C + H
Sbjct: 314 ELIEAFKQGMGKKACKYFEQGKGTCPFGSKCLYRH 348
Score = 51 (23.0 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 143 EKECSYYLKTGQCKFGITCKFHH 165
E++ Y G+C+FG C + H
Sbjct: 168 EQQLCPYAAAGECRFGDACVYLH 190
>UNIPROTKB|B7Z7B0 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation-specificity
factor subunit 4" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098
Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343
SMART:SM00356 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 HOGENOM:HOG000212457
HOVERGEN:HBG051108 OrthoDB:EOG4KH2VQ UniGene:Hs.489287
HGNC:HGNC:2327 EMBL:AC073063 EMBL:AK301745 IPI:IPI00924476
SMR:B7Z7B0 STRING:B7Z7B0 Ensembl:ENST00000441580 UCSC:uc011kix.2
Uniprot:B7Z7B0
Length = 191
Score = 113 (44.8 bits), Expect = 0.00022, P = 0.00022
Identities = 54/182 (29%), Positives = 70/182 (38%)
Query: 55 CVFYMRTGVCGYGDRCRYNHPRNXXXXXXXXXXTGDYPDRPGEPICQFYLKTGTCKFGAS 114
C ++R G+C GD+C + H +Y D P C FY K G C
Sbjct: 15 CKHWLR-GLCKKGDQCEFLH---------------EY-DMTKMPECYFYSKFGECS-NKE 56
Query: 115 CKFHH----------PKHSGGSMSHVPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFH 164
C F H P + G H PL + + R C YL G C G +CKF
Sbjct: 57 CPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRV---ICVNYL-VGFCPEGPSCKFM 112
Query: 165 HPQ---PAGTSLPASAPQ-FYPPVQ--SPTVPMAEQYGGASTSLRVARPPLLASSYVQGA 218
HP+ P GT+ PQ PP + +P V Q +S R RP + Y G
Sbjct: 113 HPRFELPMGTTEQPPLPQQTQPPAKQRTPQVIGVMQSQNSSAGNRGPRPLEQVTCYKCGE 172
Query: 219 YG 220
G
Sbjct: 173 KG 174
>RGD|1559581 [details] [associations]
symbol:Zfp36l3 "zinc finger protein 36, C3H type-like 3"
species:10116 "Rattus norvegicus" [GO:0000288 "nuclear-transcribed
mRNA catabolic process, deadenylation-dependent decay"
evidence=ISO] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0017091 "AU-rich element
binding" evidence=ISO] REFSEQ:XM_001053657 Ncbi:XP_001053657
Length = 722
Score = 108 (43.1 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 30/116 (25%), Positives = 45/116 (38%)
Query: 65 GYGDRCRYNHPRNXXXXXXXXXXTGDYPDRPGEPICQFYLKTGTCKFGASCKFHHPKHSG 124
G G+ P+ T + R +C+ + + GTC++G C+F H H
Sbjct: 95 GNGEHSLQQKPKQQKMSSSSSQATSE---RYKTELCRPFEENGTCRYGNKCQFAHGYHEL 151
Query: 125 GSMSHVPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQPAGTS-LPASAPQ 179
++S P Y P C + G C +G C F H QP LP S +
Sbjct: 152 RTLSRHPK----YKTEP----CRTFHSIGYCPYGSRCHFIHNQPEQLPMLPGSVSE 199
Score = 61 (26.5 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 28/90 (31%), Positives = 41/90 (45%)
Query: 175 ASAPQFYPPVQSPTVPMAEQYGGASTSLRVARPPLLASSYVQGAYGPVLFSPG--VVPFS 232
A AP P + P A GA+ + RVA P +++ GA +PG + P
Sbjct: 465 ALAPGAAIPPRVAFAPGAALAPGAAITPRVAIAP--GAAFTHGA---AALAPGAAITPRV 519
Query: 233 GWNPYSASVSP--VLSPGAQPAVGATSLYG 260
P +A+++P L+PGA A GA G
Sbjct: 520 AIAPGAATLAPRAALAPGAAFAPGAAMAPG 549
Score = 59 (25.8 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 33/121 (27%), Positives = 50/121 (41%)
Query: 163 FHHPQPAGTSLPASAPQFYPPVQ--SPTVPMAEQYGGASTSLRVARPPLLA---SSYVQG 217
+++ Q G LPASA QF P+ SP+ + Q G T+ +A P A ++ V G
Sbjct: 316 YNNQQQMG--LPASA-QFQMPLAGPSPSTTIFGQTGVGRTAAAIAPGPATAPGAAALVPG 372
Query: 218 A-YGP-VLFSPGVVPFSGW---------NPYSASVSPVLSPGAQPAVGATSLYGVTQISS 266
A P +PG +G + + L+PGA A GA G +
Sbjct: 373 AAMAPGTALAPGAAVATGTALALGAAMATGAAMATGAALTPGAAMATGAALALGAAMATG 432
Query: 267 S 267
+
Sbjct: 433 A 433
>UNIPROTKB|O19137 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation specificity
factor subunit 4" species:9913 "Bos taurus" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 GO:GO:0003723
Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG5084 HSSP:P47974
GO:GO:0005847 HOGENOM:HOG000212457 HOVERGEN:HBG051108 EMBL:U96448
IPI:IPI00715166 RefSeq:NP_776367.1 UniGene:Bt.55595
ProteinModelPortal:O19137 SMR:O19137 STRING:O19137
Ensembl:ENSBTAT00000002701 GeneID:280875 KEGG:bta:280875 CTD:10898
GeneTree:ENSGT00390000009627 InParanoid:O19137 KO:K14404
OMA:PLDQVTC OrthoDB:EOG4KH2VQ NextBio:20805014 Uniprot:O19137
Length = 243
Score = 116 (45.9 bits), Expect = 0.00024, P = 0.00024
Identities = 54/181 (29%), Positives = 70/181 (38%)
Query: 55 CVFYMRTGVCGYGDRCRYNHPRNXXXXXXXXXXTGDYPDRPGEPICQFYLKTGTCKFGAS 114
C ++R G+C GD+C + H +Y D P C FY K G C
Sbjct: 68 CKHWLR-GLCKKGDQCEFLH---------------EY-DMTKMPECYFYSKFGECS-NKE 109
Query: 115 CKFHH----------PKHSGGSMSHVPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFH 164
C F H P + G H PL + + R C YL G C G +CKF
Sbjct: 110 CPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRV---ICVNYL-VGFCPEGPSCKFM 165
Query: 165 HPQ---PAGTSLPASAPQ-FYPPVQ-SPTVPMAEQYGGASTSLRVARPPLLASSYVQGAY 219
HP+ P GT+ PQ PP + +P V Q +S R RP + Y G
Sbjct: 166 HPRFELPMGTTEQPPLPQQTQPPTKRTPQVIGVMQSQNSSAGSRGPRPLEQVTCYKCGEK 225
Query: 220 G 220
G
Sbjct: 226 G 226
>UNIPROTKB|G3V789 [details] [associations]
symbol:Mkrn1 "Protein Mkrn1" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 Prosite:PS00518
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:3.30.40.10
InterPro:IPR013083 EMBL:CH473959 InterPro:IPR017907
InterPro:IPR026290 PANTHER:PTHR11224 GeneTree:ENSGT00390000014093
OMA:YQRGCCA ProteinModelPortal:G3V789 Ensembl:ENSRNOT00000013124
Uniprot:G3V789
Length = 481
Score = 91 (37.1 bits), Expect = 0.00025, Sum P(3) = 0.00025
Identities = 22/67 (32%), Positives = 31/67 (46%)
Query: 55 CVFYMRTGVCGYGDRCRYNHPRNXXXXXXXXXXTGDYPDRPGEPICQFYLKTGTCKFGAS 114
C ++M GVC GD CRY+H D D P +C+ Y + G C +G
Sbjct: 61 CRYFMH-GVCKEGDNCRYSH---------------DLSDSPYGVVCK-YFQRGYCVYGDR 103
Query: 115 CKFHHPK 121
C++ H K
Sbjct: 104 CRYEHSK 110
Score = 60 (26.2 bits), Expect = 0.00025, Sum P(3) = 0.00025
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 292 QSFPERPGEPECQYFLK-TGDCKFGSSCRFHH 322
Q + E C+YF + G C FG +C + H
Sbjct: 359 QKYKEAMSNKACRYFDEGRGSCPFGGNCFYKH 390
Score = 52 (23.4 bits), Expect = 0.00025, Sum P(3) = 0.00025
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 143 EKECSYYLKTGQCKFGITCKFHH 165
EK+ Y G+C++G C + H
Sbjct: 210 EKQLCPYAAVGECRYGENCVYLH 232
>UNIPROTKB|F1SRP7 [details] [associations]
symbol:MKRN1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003682 "chromatin binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000571 Pfam:PF00642
Pfam:PF13639 PROSITE:PS50089 PROSITE:PS50103 SMART:SM00184
SMART:SM00356 Prosite:PS00518 GO:GO:0046872 GO:GO:0008270
GO:GO:0003682 GO:GO:0003676 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 InterPro:IPR026290 PANTHER:PTHR11224 KO:K15687
CTD:23608 GeneTree:ENSGT00390000014093 OMA:YQRGCCA EMBL:CU655865
RefSeq:XP_003134656.1 UniGene:Ssc.10393 Ensembl:ENSSSCT00000017962
GeneID:100514261 KEGG:ssc:100514261 Uniprot:F1SRP7
Length = 482
Score = 90 (36.7 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 22/67 (32%), Positives = 31/67 (46%)
Query: 55 CVFYMRTGVCGYGDRCRYNHPRNXXXXXXXXXXTGDYPDRPGEPICQFYLKTGTCKFGAS 114
C ++M GVC GD CRY+H D D P +C+ Y + G C +G
Sbjct: 61 CRYFMH-GVCKEGDNCRYSH---------------DLSDSPYGVVCK-YFQRGYCIYGDR 103
Query: 115 CKFHHPK 121
C++ H K
Sbjct: 104 CRYEHSK 110
Score = 60 (26.2 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 292 QSFPERPGEPECQYFLK-TGDCKFGSSCRFHH 322
Q + E C+YF + G C FG +C + H
Sbjct: 359 QKYKEAMSNKACRYFDEGRGSCPFGGNCFYKH 390
Score = 53 (23.7 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 143 EKECSYYLKTGQCKFGITCKFHHPQP 168
+K+ Y G+C++G C + H P
Sbjct: 210 KKQLCPYAAVGECRYGENCVYLHGDP 235
>ZFIN|ZDB-GENE-020213-1 [details] [associations]
symbol:mkrn1 "makorin, ring finger protein, 1"
species:7955 "Danio rerio" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000571
PROSITE:PS50089 PROSITE:PS50103 SMART:SM00184 SMART:SM00356
UniPathway:UPA00143 Prosite:PS00518 ZFIN:ZDB-GENE-020213-1
GO:GO:0046872 GO:GO:0016874 GO:GO:0008270 GO:GO:0003676
GO:GO:0016567 Gene3D:3.30.40.10 InterPro:IPR013083 eggNOG:COG5084
InterPro:IPR017907 HSSP:P47974 InterPro:IPR026290 PANTHER:PTHR11224
HOGENOM:HOG000252976 KO:K15687 EMBL:CR792454 EMBL:CT826375
EMBL:BC095243 EMBL:AF277173 IPI:IPI00639757 RefSeq:NP_694510.1
UniGene:Dr.78561 ProteinModelPortal:Q4VBT5 STRING:Q4VBT5
Ensembl:ENSDART00000061070 GeneID:170782 KEGG:dre:170782 CTD:23608
GeneTree:ENSGT00390000014093 HOVERGEN:HBG066965 InParanoid:Q4VBT5
OMA:YQRGCCA OrthoDB:EOG45DWPM NextBio:20797100 Bgee:Q4VBT5
Uniprot:Q4VBT5
Length = 439
Score = 83 (34.3 bits), Expect = 0.00028, Sum P(3) = 0.00028
Identities = 22/69 (31%), Positives = 31/69 (44%)
Query: 55 CVFYMRTGVCGYGDRCRYNHPRNXXXXXXXXXXTGDYPDRPGEPICQFYLKTGTCKFGAS 114
C ++M G+C G+ CRY+H D IC+F+ K G C FG
Sbjct: 24 CRYFMH-GLCKEGENCRYSH---------------DLSSCKQTMICKFFQK-GCCAFGDR 66
Query: 115 CKFHHPKHS 123
C++ H K S
Sbjct: 67 CRYEHTKPS 75
Score = 65 (27.9 bits), Expect = 0.00028, Sum P(3) = 0.00028
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 289 QMEQSFPERPGEPECQYFLK-TGDCKFGSSCRFHH 322
Q+ Q + + G C+YF + G C FG++C + H
Sbjct: 311 QLIQKYKDGMGTKPCRYFDEGRGTCPFGANCFYKH 345
Score = 62 (26.9 bits), Expect = 0.00054, Sum P(3) = 0.00054
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 345 GAQPCTFYLQN-GRCKFGATCKFDH 368
G +PC ++ + G C FGA C + H
Sbjct: 321 GTKPCRYFDEGRGTCPFGANCFYKH 345
Score = 54 (24.1 bits), Expect = 0.00028, Sum P(3) = 0.00028
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 143 EKECSYYLKTGQCKFGITCKFHH 165
+K+ Y G+C++G+ C + H
Sbjct: 165 KKQLCPYAAVGECRYGLNCAYLH 187
>MGI|MGI:1914277 [details] [associations]
symbol:Mkrn2 "makorin, ring finger protein, 2" species:10090
"Mus musculus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=ISO;ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 UniPathway:UPA00143
MGI:MGI:1914277 Prosite:PS00518 GO:GO:0046872 GO:GO:0016874
GO:GO:0008270 GO:GO:0003676 GO:GO:0016567 GO:GO:0005622
Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:CH466523 eggNOG:COG5084
InterPro:IPR017907 InterPro:IPR026290 PANTHER:PTHR11224
HOGENOM:HOG000252976 KO:K15687 GeneTree:ENSGT00390000014093
HOVERGEN:HBG066965 CTD:23609 OrthoDB:EOG4229K2 InterPro:IPR026293
PANTHER:PTHR11224:SF17 OMA:KGYCAYG EMBL:AF277171 EMBL:AK011295
EMBL:AK077926 EMBL:BC025547 IPI:IPI00620251 RefSeq:NP_075779.2
UniGene:Mm.101316 ProteinModelPortal:Q9ERV1 SMR:Q9ERV1
PhosphoSite:Q9ERV1 PRIDE:Q9ERV1 Ensembl:ENSMUST00000000449
GeneID:67027 KEGG:mmu:67027 InParanoid:Q6GTY9 NextBio:323348
Bgee:Q9ERV1 CleanEx:MM_MKRN2 Genevestigator:Q9ERV1
GermOnline:ENSMUSG00000000439 Uniprot:Q9ERV1
Length = 416
Score = 82 (33.9 bits), Expect = 0.00029, Sum P(3) = 0.00029
Identities = 22/77 (28%), Positives = 34/77 (44%)
Query: 58 YMRTGVCGYGDRCRYNHPRNXXXXXXXXXXTGDYPDRPGEPICQFYLKTGTCKFGASCKF 117
Y GVC G +C ++H D + IC++Y K G C +GA C++
Sbjct: 10 YFMHGVCREGSQCLFSH---------------DLANSKPSTICKYYQK-GYCAYGARCRY 53
Query: 118 HH---PKHSGGSMSHVP 131
H P +GG++ P
Sbjct: 54 DHTKPPAAAGGAVGPAP 70
Score = 70 (29.7 bits), Expect = 0.00029, Sum P(3) = 0.00029
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 289 QMEQSFPERPGEPECQYFLK-TGDCKFGSSCRFHH 322
++ ++F + G+ C+YF + G C FGS C + H
Sbjct: 313 ELIEAFKQGMGKKACKYFEQGKGTCPFGSKCLYRH 347
Score = 49 (22.3 bits), Expect = 0.00029, Sum P(3) = 0.00029
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 143 EKECSYYLKTGQCKFGITCKFHH 165
E + Y G+C+FG C + H
Sbjct: 167 EPQLCPYAAAGECRFGDACVYLH 189
>RGD|620440 [details] [associations]
symbol:Cpsf4 "cleavage and polyadenylation specific factor 4"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098
Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343
SMART:SM00356 RGD:620440 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG5084
HSSP:P47974 GO:GO:0005847 HOGENOM:HOG000212457 HOVERGEN:HBG051108
CTD:10898 GeneTree:ENSGT00390000009627 KO:K14404 OrthoDB:EOG4KH2VQ
EMBL:BC089824 IPI:IPI00553898 RefSeq:NP_001012351.1
UniGene:Rn.104788 ProteinModelPortal:Q5FVR7 SMR:Q5FVR7
Ensembl:ENSRNOT00000042474 GeneID:304277 KEGG:rno:304277
InParanoid:Q5FVR7 NextBio:652764 ArrayExpress:Q5FVR7
Genevestigator:Q5FVR7 GermOnline:ENSRNOG00000025217 Uniprot:Q5FVR7
Length = 243
Score = 115 (45.5 bits), Expect = 0.00031, P = 0.00031
Identities = 54/181 (29%), Positives = 70/181 (38%)
Query: 55 CVFYMRTGVCGYGDRCRYNHPRNXXXXXXXXXXTGDYPDRPGEPICQFYLKTGTCKFGAS 114
C ++R G+C GD+C + H +Y D P C FY K G C
Sbjct: 68 CKHWLR-GLCKKGDQCEFLH---------------EY-DMTKMPECYFYSKFGECS-NKE 109
Query: 115 CKFHH----------PKHSGGSMSHVPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFH 164
C F H P + G H PL + + R C YL G C G +CKF
Sbjct: 110 CPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRV---ICVNYL-VGFCPEGPSCKFM 165
Query: 165 HPQ---PAGTSLPASAPQ-FYPPVQ-SPTVPMAEQYGGASTSLRVARPPLLASSYVQGAY 219
HP+ P GT+ PQ PP + +P V Q +S R RP + Y G
Sbjct: 166 HPRFELPMGTTEQPPLPQQTQPPTKRAPQVIGVMQSQNSSAGNRGPRPLEQVTCYKCGEK 225
Query: 220 G 220
G
Sbjct: 226 G 226
>UNIPROTKB|P26651 [details] [associations]
symbol:ZFP36 "Tristetraprolin" species:9606 "Homo sapiens"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0007243 "intracellular
protein kinase cascade" evidence=IEA] [GO:0035925 "mRNA 3'-UTR
AU-rich region binding" evidence=IEA] [GO:0045638 "negative
regulation of myeloid cell differentiation" evidence=IEA]
[GO:0050728 "negative regulation of inflammatory response"
evidence=IEA] [GO:0050779 "RNA destabilization" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IMP;IDA] [GO:0006402
"mRNA catabolic process" evidence=IDA] [GO:0060213 "positive
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0019957 "C-C chemokine binding"
evidence=IPI] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0019901 "protein kinase binding"
evidence=IPI] [GO:0006950 "response to stress" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0071889
"14-3-3 protein binding" evidence=IDA] [GO:0032680 "regulation of
tumor necrosis factor production" evidence=IDA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA] [GO:1900153
"positive regulation of nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISS] [GO:0035278 "negative
regulation of translation involved in gene silencing by miRNA"
evidence=ISS] [GO:0003727 "single-stranded RNA binding"
evidence=TAS] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA;TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0005829
GO:GO:0005634 GO:GO:0010467 GO:GO:0006950 GO:GO:0046872
GO:GO:0003677 GO:GO:0050728 GO:GO:0008270 GO:GO:0003729
GO:GO:0003727 GO:GO:0007243 GO:GO:0017091 GO:GO:0000122
GO:GO:0006402 GO:GO:0071889 GO:GO:0010494 GO:GO:0060213
eggNOG:COG5063 GO:GO:0000289 GO:GO:0045638 GO:GO:0070935
GO:GO:0032680 GO:GO:0050779 HOGENOM:HOG000233479 HOVERGEN:HBG008483
CTD:7538 KO:K15308 EMBL:M92843 EMBL:M92844 EMBL:M63625
EMBL:AK314042 EMBL:AY771351 EMBL:BC009693 IPI:IPI00000893
PIR:S34427 RefSeq:NP_003398.2 UniGene:Hs.534052
ProteinModelPortal:P26651 SMR:P26651 DIP:DIP-29845N IntAct:P26651
MINT:MINT-1171915 STRING:P26651 PhosphoSite:P26651 DMDM:136471
PRIDE:P26651 DNASU:7538 Ensembl:ENST00000248673 GeneID:7538
KEGG:hsa:7538 UCSC:uc002olh.1 GeneCards:GC19P039897 HGNC:HGNC:12862
HPA:HPA006009 MIM:190700 neXtProt:NX_P26651 PharmGKB:PA37451
InParanoid:P26651 OMA:RRLPIFN OrthoDB:EOG4S4PH4 PhylomeDB:P26651
ChiTaRS:ZFP36 GenomeRNAi:7538 NextBio:29497 Bgee:P26651
CleanEx:HS_ZFP36 Genevestigator:P26651 GermOnline:ENSG00000128016
Uniprot:P26651
Length = 326
Score = 116 (45.9 bits), Expect = 0.00047, P = 0.00047
Identities = 46/159 (28%), Positives = 72/159 (45%)
Query: 88 TGDYPDRPGEPICQFYLKTGTCKFGASCKFHHPKHSGGSMSHVPLNIYGYPLRPGEKECS 147
T P R +C+ + ++G C++GA C+F H G + N +P E
Sbjct: 97 TSTTPSRYKTELCRTFSESGRCRYGAKCQF---AHGLGELRQA--N--RHPKYKTELCHK 149
Query: 148 YYLKTGQCKFGITCKFHHPQPAGTSLPASAPQFYPPVQSPTVPMAEQYGGASTSLR---V 204
+YL+ G+C +G C F H P S +AP +PPV ++ + G TS +
Sbjct: 150 FYLQ-GRCPYGSRCHFIH-NP---SEDLAAPG-HPPVLRQSISFSGLPSGRRTSPPPPGL 203
Query: 205 ARPPLLASSYVQGAYGPVLFSPGVVPFSGWNPYSASVSP 243
A P L +SS+ + P PG +P S P + S +P
Sbjct: 204 AGPSLSSSSFSPSSSPP---PPGDLPLS---PSAFSAAP 236
>UNIPROTKB|E2REH2 [details] [associations]
symbol:MKRN2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000571
Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089 PROSITE:PS50103
SMART:SM00184 SMART:SM00356 Prosite:PS00518 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 GO:GO:0005622 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 InterPro:IPR026290
PANTHER:PTHR11224 GeneTree:ENSGT00390000014093 InterPro:IPR026293
PANTHER:PTHR11224:SF17 OMA:KGYCAYG EMBL:AAEX03012060
Ensembl:ENSCAFT00000007980 Uniprot:E2REH2
Length = 416
Score = 78 (32.5 bits), Expect = 0.00050, Sum P(3) = 0.00050
Identities = 21/77 (27%), Positives = 35/77 (45%)
Query: 58 YMRTGVCGYGDRCRYNHPRNXXXXXXXXXXTGDYPDRPGEPICQFYLKTGTCKFGASCKF 117
Y GVC G++C ++H D + IC++Y K G C +G C++
Sbjct: 10 YFMHGVCREGNQCLFSH---------------DLANSKPSTICKYYQK-GYCAYGTRCRY 53
Query: 118 HHPKHS---GGSMSHVP 131
H + S GG++ +P
Sbjct: 54 DHTRPSAAAGGAVGTMP 70
Score = 70 (29.7 bits), Expect = 0.00050, Sum P(3) = 0.00050
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 289 QMEQSFPERPGEPECQYFLK-TGDCKFGSSCRFHH 322
++ ++F + G+ C+YF + G C FGS C + H
Sbjct: 313 ELIEAFKQGMGKKACKYFEQGKGTCPFGSKCLYRH 347
Score = 51 (23.0 bits), Expect = 0.00050, Sum P(3) = 0.00050
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 143 EKECSYYLKTGQCKFGITCKFHH 165
E++ Y G+C+FG C + H
Sbjct: 167 EQQLCPYAAAGECRFGDACVYLH 189
>UNIPROTKB|D4A905 [details] [associations]
symbol:Cpsf4 "Cleavage and polyadenylation-specificity
factor subunit 4" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098
Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343
SMART:SM00356 RGD:620440 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 GeneTree:ENSGT00390000009627
OMA:PLDQVTC OrthoDB:EOG4KH2VQ IPI:IPI00358639
Ensembl:ENSRNOT00000038958 Uniprot:D4A905
Length = 243
Score = 113 (44.8 bits), Expect = 0.00052, P = 0.00052
Identities = 54/181 (29%), Positives = 69/181 (38%)
Query: 55 CVFYMRTGVCGYGDRCRYNHPRNXXXXXXXXXXTGDYPDRPGEPICQFYLKTGTCKFGAS 114
C ++R G+C GD+C + H +Y D P C FY K G C
Sbjct: 68 CKHWLR-GLCKKGDQCEFLH---------------EY-DMTKMPECYFYSKFGECS-NKE 109
Query: 115 CKFHH----------PKHSGGSMSHVPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFH 164
C F H P + G H PL + R C YL G C G +CKF
Sbjct: 110 CPFLHIDPESKIKDCPWYDRGFCKHGPLCRHR---RTRRVICVNYL-VGFCPEGPSCKFM 165
Query: 165 HPQ---PAGTSLPASAPQ-FYPPVQ-SPTVPMAEQYGGASTSLRVARPPLLASSYVQGAY 219
HP+ P GT+ PQ PP + +P V Q +S R RP + Y G
Sbjct: 166 HPRFELPMGTTEQPPLPQQTQPPTKRAPQVIGVMQSQNSSAGNRGPRPLEQVTCYKCGEK 225
Query: 220 G 220
G
Sbjct: 226 G 226
>UNIPROTKB|Q6GLD9 [details] [associations]
symbol:mkrn2 "Probable E3 ubiquitin-protein ligase
makorin-2" species:8364 "Xenopus (Silurana) tropicalis" [GO:0006351
"transcription, DNA-dependent" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0009798 "axis specification"
evidence=ISS] [GO:0014065 "phosphatidylinositol 3-kinase cascade"
evidence=ISS] [GO:0043491 "protein kinase B signaling cascade"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0050768
"negative regulation of neurogenesis" evidence=ISS]
InterPro:IPR001841 InterPro:IPR018957 InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50089 PROSITE:PS50103 SMART:SM00184
SMART:SM00356 UniPathway:UPA00143 Pfam:PF00097 Prosite:PS00518
GO:GO:0046872 GO:GO:0016874 GO:GO:0014065 GO:GO:0008270
GO:GO:0045944 GO:GO:0006351 GO:GO:0003676 GO:GO:0016567
GO:GO:0009790 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0043491
eggNOG:COG5084 GO:GO:0009798 GO:GO:0050768 InterPro:IPR017907
InterPro:IPR026290 PANTHER:PTHR11224 HOGENOM:HOG000252976 KO:K15687
HOVERGEN:HBG066965 CTD:23609 OrthoDB:EOG4229K2 InterPro:IPR026293
PANTHER:PTHR11224:SF17 EMBL:BC074559 RefSeq:NP_001005447.1
UniGene:Str.24743 ProteinModelPortal:Q6GLD9 GeneID:448038
KEGG:xtr:448038 Xenbase:XB-GENE-5879487 InParanoid:Q6GLD9
Uniprot:Q6GLD9
Length = 418
Score = 91 (37.1 bits), Expect = 0.00057, Sum P(3) = 0.00057
Identities = 24/82 (29%), Positives = 35/82 (42%)
Query: 58 YMRTGVCGYGDRCRYNHPRNXXXXXXXXXXTGDYPDRPGEPICQFYLKTGTCKFGASCKF 117
Y GVC G RC ++H D +C+FY + G C +GA C++
Sbjct: 10 YFLHGVCREGGRCLFSH---------------DLATSKPSTVCRFYQR-GQCAYGARCRY 53
Query: 118 HHPKHSGGSMSHVPLNIYGYPL 139
H K GS+ + P + PL
Sbjct: 54 DHVKPCNGSVFYPPQEMAPAPL 75
Score = 69 (29.3 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 142 GEKECSYYLK-TGQCKFGITCKFHHPQPAGTSLPASAPQ 179
G+K C Y+ + G C FG C + H P GT P+
Sbjct: 322 GKKACKYFDQGRGTCPFGGKCLYLHAYPDGTRAEPEKPR 360
Score = 62 (26.9 bits), Expect = 0.00057, Sum P(3) = 0.00057
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 289 QMEQSFPERPGEPECQYFLK-TGDCKFGSSCRFHH 322
++ ++F + G+ C+YF + G C FG C + H
Sbjct: 312 ELIEAFKQGMGKKACKYFDQGRGTCPFGGKCLYLH 346
Score = 44 (20.5 bits), Expect = 0.00057, Sum P(3) = 0.00057
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 137 YPLRPGEKECSYYLKTGQCKFGITCKFHH 165
YP P ++ C + + G C +G +C + H
Sbjct: 162 YPDAP-QQLCPF-AQAGGCHYGESCPYIH 188
>MGI|MGI:1859353 [details] [associations]
symbol:Mkrn1 "makorin, ring finger protein, 1" species:10090
"Mus musculus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 UniPathway:UPA00143
MGI:MGI:1859353 Prosite:PS00518 GO:GO:0046872 GO:GO:0016874
GO:GO:0008270 GO:GO:0003682 GO:GO:0003676 GO:GO:0016567
Gene3D:3.30.40.10 InterPro:IPR013083 eggNOG:COG5084
InterPro:IPR017907 InterPro:IPR026290 PANTHER:PTHR11224
GeneTree:ENSGT00390000014093 HOVERGEN:HBG066965 OrthoDB:EOG45DWPM
EMBL:AF192785 IPI:IPI00459256 IPI:IPI00850315 UniGene:Mm.270484
ProteinModelPortal:Q9QXP6 SMR:Q9QXP6 STRING:Q9QXP6
PhosphoSite:Q9QXP6 PaxDb:Q9QXP6 PRIDE:Q9QXP6
Ensembl:ENSMUST00000114822 InParanoid:Q9QXP6 ChiTaRS:MKRN1
Bgee:Q9QXP6 CleanEx:MM_MKRN1 Genevestigator:Q9QXP6
GermOnline:ENSMUSG00000029922 Uniprot:Q9QXP6
Length = 481
Score = 91 (37.1 bits), Expect = 0.00063, Sum P(3) = 0.00063
Identities = 22/67 (32%), Positives = 31/67 (46%)
Query: 55 CVFYMRTGVCGYGDRCRYNHPRNXXXXXXXXXXTGDYPDRPGEPICQFYLKTGTCKFGAS 114
C ++M GVC GD CRY+H D D P +C+ Y + G C +G
Sbjct: 61 CRYFMH-GVCKEGDNCRYSH---------------DLSDSPYGVVCK-YFQRGYCVYGDR 103
Query: 115 CKFHHPK 121
C++ H K
Sbjct: 104 CRYEHSK 110
Score = 60 (26.2 bits), Expect = 0.00063, Sum P(3) = 0.00063
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 292 QSFPERPGEPECQYFLK-TGDCKFGSSCRFHH 322
Q + E C+YF + G C FG +C + H
Sbjct: 359 QKYKEAMSNKACRYFDEGRGSCPFGGNCFYKH 390
Score = 48 (22.0 bits), Expect = 0.00063, Sum P(3) = 0.00063
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 143 EKECSYYLKTGQCKFGITCKFHH 165
+K+ Y G+C++G C + H
Sbjct: 210 KKQLCPYAAVGECRYGENCVYLH 232
>UNIPROTKB|F1MF12 [details] [associations]
symbol:MKRN1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 Prosite:PS00518
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 InterPro:IPR026290
PANTHER:PTHR11224 GeneTree:ENSGT00390000014093 OMA:YQRGCCA
EMBL:DAAA02011734 EMBL:DAAA02011733 IPI:IPI00701209
Ensembl:ENSBTAT00000010932 ArrayExpress:F1MF12 Uniprot:F1MF12
Length = 480
Score = 90 (36.7 bits), Expect = 0.00064, Sum P(3) = 0.00064
Identities = 22/67 (32%), Positives = 31/67 (46%)
Query: 55 CVFYMRTGVCGYGDRCRYNHPRNXXXXXXXXXXTGDYPDRPGEPICQFYLKTGTCKFGAS 114
C ++M GVC GD CRY+H D D P +C+ Y + G C +G
Sbjct: 61 CWYFMH-GVCKEGDNCRYSH---------------DLSDSPYGVVCK-YFQRGYCIYGDR 103
Query: 115 CKFHHPK 121
C++ H K
Sbjct: 104 CRYEHSK 110
Score = 60 (26.2 bits), Expect = 0.00064, Sum P(3) = 0.00064
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 292 QSFPERPGEPECQYFLK-TGDCKFGSSCRFHH 322
Q + E C+YF + G C FG +C + H
Sbjct: 358 QKYKEAMSNKACRYFDEGRGSCPFGGNCFYKH 389
Score = 49 (22.3 bits), Expect = 0.00064, Sum P(3) = 0.00064
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 143 EKECSYYLKTGQCKFGITCKFHH 165
+K+ Y G+C++G C + H
Sbjct: 209 KKQLCPYAAVGECRYGENCAYLH 231
>UNIPROTKB|E2RRA5 [details] [associations]
symbol:MKRN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 Prosite:PS00518
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 InterPro:IPR026290
PANTHER:PTHR11224 GeneTree:ENSGT00390000014093 OMA:YQRGCCA
EMBL:AAEX03010214 EMBL:AAEX03010213 Ensembl:ENSCAFT00000006351
Uniprot:E2RRA5
Length = 487
Score = 91 (37.1 bits), Expect = 0.00066, Sum P(3) = 0.00066
Identities = 22/67 (32%), Positives = 31/67 (46%)
Query: 55 CVFYMRTGVCGYGDRCRYNHPRNXXXXXXXXXXTGDYPDRPGEPICQFYLKTGTCKFGAS 114
C ++M GVC GD CRY+H D D P +C+ Y + G C +G
Sbjct: 66 CKYFMH-GVCKEGDNCRYSH---------------DLSDSPYGVVCK-YFQRGYCIYGDR 108
Query: 115 CKFHHPK 121
C++ H K
Sbjct: 109 CRYEHSK 115
Score = 60 (26.2 bits), Expect = 0.00066, Sum P(3) = 0.00066
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 292 QSFPERPGEPECQYFLK-TGDCKFGSSCRFHH 322
Q + E C+YF + G C FG +C + H
Sbjct: 364 QKYKEAMSNKACRYFDEGRGSCPFGGNCFYKH 395
Score = 48 (22.0 bits), Expect = 0.00066, Sum P(3) = 0.00066
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 143 EKECSYYLKTGQCKFGITCKFHH 165
+K+ Y G+C++G C + H
Sbjct: 215 KKQLCPYAAVGECRYGENCVYLH 237
>ZFIN|ZDB-GENE-020213-2 [details] [associations]
symbol:mkrn2 "makorin, ring finger protein, 2"
species:7955 "Danio rerio" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=ISS] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0016874 "ligase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50089 PROSITE:PS50103
SMART:SM00184 SMART:SM00356 UniPathway:UPA00143 Pfam:PF00097
Prosite:PS00518 ZFIN:ZDB-GENE-020213-2 GO:GO:0007399 GO:GO:0030154
GO:GO:0006355 GO:GO:0046872 GO:GO:0016874 GO:GO:0008270
GO:GO:0006351 GO:GO:0003676 GO:GO:0016567 GO:GO:0005622
Gene3D:3.30.40.10 InterPro:IPR013083 eggNOG:COG5084
InterPro:IPR017907 InterPro:IPR026290 PANTHER:PTHR11224
HOGENOM:HOG000252976 KO:K15687 GeneTree:ENSGT00390000014093
HOVERGEN:HBG066965 EMBL:AF277172 EMBL:BC065352 IPI:IPI00493411
RefSeq:NP_694511.1 UniGene:Dr.77762 STRING:Q9DFG8
Ensembl:ENSDART00000019997 Ensembl:ENSDART00000130504 GeneID:170783
KEGG:dre:170783 CTD:23609 OrthoDB:EOG4229K2 NextBio:20797101
ArrayExpress:Q9DFG8 Bgee:Q9DFG8 InterPro:IPR026293
PANTHER:PTHR11224:SF17 Uniprot:Q9DFG8
Length = 414
Score = 82 (33.9 bits), Expect = 0.00087, Sum P(3) = 0.00087
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 55 CVFYMRTGVCGYGDRCRYNH 74
C +Y R G C YGDRCRY+H
Sbjct: 37 CKYYQR-GACAYGDRCRYDH 55
Score = 62 (26.9 bits), Expect = 0.00087, Sum P(3) = 0.00087
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 89 GDYPD--RPGEPICQFYLKTGTCKFGASCKFHHPKHSGGSMSHVPLNIYGYPLRPG-EKE 145
G +P+ + IC F L G C++G SC + H + HV L+ + R EK+
Sbjct: 157 GTFPELQQTSPQICPF-LAAGQCQYGESCPYLHGEMCEICRQHV-LHPHDPEQRAAHEKK 214
Query: 146 C 146
C
Sbjct: 215 C 215
Score = 52 (23.4 bits), Expect = 0.00087, Sum P(3) = 0.00087
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 292 QSFPERPGEPECQYFLK-TGDCKFGSSCRFHH 322
+ F + C+YF + G C FG C + H
Sbjct: 315 EEFKSGVSKKACKYFDQGRGTCPFGGKCFYMH 346
>UNIPROTKB|F1NI93 [details] [associations]
symbol:MKRN2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR001841 InterPro:IPR000571
Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089 PROSITE:PS50103
SMART:SM00184 SMART:SM00356 Prosite:PS00518 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 GO:GO:0005622 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 InterPro:IPR026290
PANTHER:PTHR11224 GeneTree:ENSGT00390000014093 InterPro:IPR026293
PANTHER:PTHR11224:SF17 OMA:KGYCAYG EMBL:AADN02013930
IPI:IPI00584461 Ensembl:ENSGALT00000007996 Uniprot:F1NI93
Length = 417
Score = 72 (30.4 bits), Expect = 0.00092, Sum P(3) = 0.00092
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 142 GEKECSYYLK-TGQCKFGITCKFHHPQPAGTSLPASAPQ 179
G+K C Y+ + G C FG C + H P GT P+
Sbjct: 322 GKKPCKYFEQGKGTCPFGGKCLYFHAYPDGTRAEPEKPR 360
Score = 71 (30.1 bits), Expect = 0.00092, Sum P(3) = 0.00092
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 55 CVFYMRTGVCGYGDRCRYNHPR 76
C +Y + G C YG RCRY+H R
Sbjct: 37 CKYYQK-GQCAYGARCRYDHIR 57
Score = 54 (24.1 bits), Expect = 0.00092, Sum P(3) = 0.00092
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 96 GEPICQFYLKTGTCKFGASCKFHH 119
GE +C Y G C FG C + H
Sbjct: 166 GEQLCP-YAAAGACHFGDRCLYLH 188
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.136 0.439 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 477 404 0.00099 117 3 11 22 0.42 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 32
No. of states in DFA: 616 (65 KB)
Total size of DFA: 280 KB (2143 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 35.03u 0.11s 35.14t Elapsed: 00:00:01
Total cpu time: 35.04u 0.11s 35.15t Elapsed: 00:00:01
Start: Sat May 11 12:52:26 2013 End: Sat May 11 12:52:27 2013