Query 011776
Match_columns 477
No_of_seqs 393 out of 1760
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 05:06:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011776.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011776hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1677 CCCH-type Zn-finger pr 99.9 1.7E-24 3.6E-29 219.9 17.6 253 43-366 77-332 (332)
2 KOG1677 CCCH-type Zn-finger pr 99.5 3.4E-14 7.3E-19 144.7 8.5 80 293-374 125-205 (332)
3 KOG1492 C3H1-type Zn-finger pr 99.4 1.8E-13 4E-18 132.4 4.5 81 50-168 204-284 (377)
4 KOG1040 Polyadenylation factor 99.3 2.8E-12 6E-17 131.3 7.1 67 301-371 159-226 (325)
5 KOG2494 C3H1-type Zn-finger pr 99.2 1.5E-11 3.4E-16 124.4 4.9 219 98-377 38-260 (331)
6 KOG1040 Polyadenylation factor 99.1 8.5E-11 1.8E-15 120.4 6.1 86 51-168 44-130 (325)
7 KOG1492 C3H1-type Zn-finger pr 98.9 1.5E-09 3.3E-14 105.5 5.1 54 95-168 204-257 (377)
8 COG5063 CTH1 CCCH-type Zn-fing 98.7 6.4E-08 1.4E-12 97.6 9.7 193 51-376 114-344 (351)
9 KOG2494 C3H1-type Zn-finger pr 98.7 2.4E-08 5.2E-13 101.5 6.6 103 52-169 37-155 (331)
10 COG5084 YTH1 Cleavage and poly 98.7 2.5E-07 5.3E-12 93.5 12.7 88 51-169 73-160 (285)
11 COG5063 CTH1 CCCH-type Zn-fing 98.5 5.3E-07 1.1E-11 91.1 9.0 180 95-371 113-299 (351)
12 KOG2333 Uncharacterized conser 98.4 6.4E-08 1.4E-12 102.7 1.2 59 300-368 76-136 (614)
13 KOG4791 Uncharacterized conser 98.3 3.4E-07 7.3E-12 96.8 4.5 82 52-168 3-85 (667)
14 COG5084 YTH1 Cleavage and poly 98.3 6.4E-07 1.4E-11 90.6 5.4 87 51-169 103-191 (285)
15 PF00642 zf-CCCH: Zinc finger 98.2 3.6E-07 7.8E-12 61.2 0.8 26 96-121 2-27 (27)
16 PF00642 zf-CCCH: Zinc finger 98.2 3.3E-07 7.2E-12 61.3 0.1 26 50-75 1-26 (27)
17 KOG1595 CCCH-type Zn-finger pr 98.0 1E-05 2.2E-10 87.2 6.0 88 62-170 207-294 (528)
18 KOG1763 Uncharacterized conser 97.6 1.9E-05 4.1E-10 79.7 0.7 78 94-172 89-195 (343)
19 smart00356 ZnF_C3H1 zinc finge 97.6 5E-05 1.1E-09 49.8 2.3 25 96-121 3-27 (27)
20 KOG4791 Uncharacterized conser 97.6 3.2E-05 7E-10 82.2 2.1 54 97-169 3-56 (667)
21 smart00356 ZnF_C3H1 zinc finge 97.5 7.1E-05 1.5E-09 49.0 2.4 25 51-76 3-27 (27)
22 KOG3702 Nuclear polyadenylated 97.4 0.00045 9.8E-09 76.2 7.7 42 68-123 525-566 (681)
23 KOG1763 Uncharacterized conser 97.3 6.4E-05 1.4E-09 76.0 0.3 80 44-124 84-193 (343)
24 KOG2333 Uncharacterized conser 97.2 9.7E-05 2.1E-09 79.1 1.0 66 96-171 75-144 (614)
25 COG5252 Uncharacterized conser 96.9 0.00034 7.4E-09 69.0 0.8 78 94-172 82-180 (299)
26 KOG2185 Predicted RNA-processi 96.7 0.00071 1.5E-08 71.2 1.6 57 65-122 97-164 (486)
27 COG5252 Uncharacterized conser 96.3 0.0014 2.9E-08 64.9 0.8 76 47-123 80-177 (299)
28 PF14608 zf-CCCH_2: Zinc finge 96.1 0.0033 7.1E-08 38.9 1.7 19 54-75 1-19 (19)
29 PF14608 zf-CCCH_2: Zinc finge 95.7 0.0059 1.3E-07 37.8 1.5 19 99-120 1-19 (19)
30 KOG1595 CCCH-type Zn-finger pr 95.6 0.035 7.6E-07 60.5 7.9 62 301-377 237-298 (528)
31 KOG2185 Predicted RNA-processi 95.5 0.0056 1.2E-07 64.6 1.5 34 44-78 132-165 (486)
32 COG5152 Uncharacterized conser 94.4 0.014 3.1E-07 56.6 0.6 28 52-79 141-168 (259)
33 KOG3702 Nuclear polyadenylated 94.2 0.07 1.5E-06 59.5 5.5 74 64-171 575-649 (681)
34 KOG2202 U2 snRNP splicing fact 93.6 0.01 2.2E-07 59.4 -1.9 29 140-169 149-177 (260)
35 COG5152 Uncharacterized conser 93.1 0.033 7.2E-07 54.1 0.6 25 347-371 142-166 (259)
36 KOG1039 Predicted E3 ubiquitin 89.3 0.14 3.1E-06 53.7 0.8 24 98-122 9-32 (344)
37 KOG1813 Predicted E3 ubiquitin 89.0 0.12 2.6E-06 52.9 0.1 28 52-79 186-213 (313)
38 KOG2202 U2 snRNP splicing fact 88.8 0.15 3.3E-06 51.2 0.6 28 342-370 148-175 (260)
39 PF10650 zf-C3H1: Putative zin 88.3 0.26 5.6E-06 32.2 1.2 22 98-120 1-22 (23)
40 KOG1813 Predicted E3 ubiquitin 87.7 0.18 3.9E-06 51.7 0.3 26 98-123 187-212 (313)
41 KOG1039 Predicted E3 ubiquitin 86.6 0.26 5.7E-06 51.8 0.7 25 144-169 9-33 (344)
42 PF10650 zf-C3H1: Putative zin 84.2 0.65 1.4E-05 30.4 1.4 22 144-166 1-22 (23)
43 KOG0153 Predicted RNA-binding 74.1 3.3 7.1E-05 43.6 3.6 34 43-77 152-185 (377)
44 KOG0153 Predicted RNA-binding 73.6 2.6 5.6E-05 44.4 2.7 34 291-325 152-185 (377)
45 KOG2135 Proteins containing th 21.0 37 0.00081 37.4 0.5 35 45-79 205-239 (526)
46 KOG3777 Uncharacterized conser 20.6 54 0.0012 35.9 1.5 23 346-371 171-193 (443)
47 KOG2135 Proteins containing th 20.3 45 0.00097 36.8 0.9 29 94-122 209-237 (526)
No 1
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=99.92 E-value=1.7e-24 Score=219.93 Aligned_cols=253 Identities=38% Similarity=0.749 Sum_probs=166.2
Q ss_pred CCCCCCCCCCcCcccccccCCCCCCCCCCCCCCCchhhhHHH-hhcCCCCCCCCCCccchhccccCCCCC-CCCCCCCCC
Q 011776 43 NESYPQRHGVPDCVFYMRTGVCGYGDRCRYNHPRNRAAVEAA-VRATGDYPDRPGEPICQFYLKTGTCKF-GASCKFHHP 120 (477)
Q Consensus 43 ~~~yp~Rp~~~~C~yF~rtG~C~~G~~CkF~H~~~~~~~~~~-~r~~~~~Per~k~~~Cr~FlktG~Ck~-G~~CkF~H~ 120 (477)
...|++++...+|.+|.+++.|.++..|+|+|+..+...... .......|++.++++|++|.++|.|+| |++|+|+|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~ 156 (332)
T KOG1677|consen 77 SSPYPERSGEGDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVRRSRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHG 156 (332)
T ss_pred cCcCCCCCCccccccccccCCCCCCCCCCccCcccccccCCccccccccCcccccCCcceeeecCccccccCchhhhcCC
Confidence 456999988899999999999999999999999733222111 134567888999999999999999999 999999999
Q ss_pred CCCCCCCcccCCcccCCCCCCCCccccccccCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCC
Q 011776 121 KHSGGSMSHVPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQPAGTSLPASAPQFYPPVQSPTVPMAEQYGGAST 200 (477)
Q Consensus 121 ~~~~~~~~~~~ln~~g~P~R~~~~~C~~y~ktG~Ck~G~~CrF~H~~~~~~~~~~~~~~~~p~~qs~s~ps~~~ygg~~~ 200 (477)
..+.+... .++..+.+.+.++++|.+|.++|.|+||.+|+|.|+....+.+.... + .... .+..+.|+
T Consensus 157 ~~e~r~~~--~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~~~~~~~---~-~~~~--~~~~~~~~---- 224 (332)
T KOG1677|consen 157 LEELRLPS--SENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDRASNRHP---Y-PVSR--NPQPQSYG---- 224 (332)
T ss_pred cccccccc--cchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCccccccccCC---c-cccc--cccccccc----
Confidence 98654222 45567778889999999999999999999999999988543322111 0 1111 22233443
Q ss_pred ceeecCCCCCcCC-cccCCCCccccCCCCcCCCCCCCCccCCCCCCCCCCCCCCCcccccccccCCCCCCcccCCCCCCC
Q 011776 201 SLRVARPPLLASS-YVQGAYGPVLFSPGVVPFSGWNPYSASVSPVLSPGAQPAVGATSLYGVTQISSSMPALAGLYPSLP 279 (477)
Q Consensus 201 ~~~~~r~~~~pg~-~~qg~y~p~~~~~g~~p~~gw~pY~~~~~p~~~~~~~~~~~~~~~y~~~~~~~~~~~~~g~~~~~~ 279 (477)
....|..++... .++-+|.+..++.+++|... ......+ .+.... +..
T Consensus 225 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-------------~~~~~~~---------~~~~~~------~~~-- 273 (332)
T KOG1677|consen 225 -LTASRSSLLNQQSKLQQPFAPSGLSESVLPRSS-------------QQNLLPQ---------GLRSSS------SSH-- 273 (332)
T ss_pred -hhhcchhhccccccccccccccccccccCcCCc-------------ccccccc---------cccccc------ccc--
Confidence 112222222211 22222322223344444100 0000000 000000 000
Q ss_pred CCCCCCCCCCcccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCC
Q 011776 280 SSAGPSSSGQMEQSFPERPGEPECQYFLKTGDCKFGSSCRFHHPRDRVVPRTNCALSPLGLPLRPGAQPCTFYLQNGRCK 359 (477)
Q Consensus 280 ~~~~p~~~~~~~~~~Perp~~~~C~~y~ktG~C~~G~~Crf~Hp~~~~~~~~~~~l~~~glP~rpg~~~C~~y~~~G~Ck 359 (477)
..-.....+++.+++++.+++|.+ +++| .++ | +|+|++...|.+|+++|.|+
T Consensus 274 --~~~~~~~~~~~~~~~~p~~~~~~~-~~~~-------------~~~--------l----~~~~~~~~~~~~~~~~~~~~ 325 (332)
T KOG1677|consen 274 --PSGSQENVNENGFRARPEQPECRS-MKSG-------------ENR--------L----LPLRPGPGACTLFSRYGSCK 325 (332)
T ss_pred --cccchhccccccCcCCCCCCccch-hccc-------------ccc--------c----cCCCCCcccccccccccccC
Confidence 000113346678999999999999 9998 121 1 79999999999999999999
Q ss_pred CCCCCcC
Q 011776 360 FGATCKF 366 (477)
Q Consensus 360 fG~~CkF 366 (477)
||..|+|
T Consensus 326 ~~~~~~~ 332 (332)
T KOG1677|consen 326 FGPLCKF 332 (332)
T ss_pred CCCcCCC
Confidence 9999997
No 2
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=99.50 E-value=3.4e-14 Score=144.66 Aligned_cols=80 Identities=33% Similarity=0.692 Sum_probs=67.4
Q ss_pred CCCCCCCCccccccccCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCcCCCCCC
Q 011776 293 SFPERPGEPECQYFLKTGDCKF-GSSCRFHHPRDRVVPRTNCALSPLGLPLRPGAQPCTFYLQNGRCKFGATCKFDHPMG 371 (477)
Q Consensus 293 ~~Perp~~~~C~~y~ktG~C~~-G~~Crf~Hp~~~~~~~~~~~l~~~glP~rpg~~~C~~y~~~G~CkfG~~CkF~Hp~~ 371 (477)
..+++.++++|++|.++|.|+| |++|||+|.++..-... .++.++++.+.++.+|.+|.++|.||||.+|+|+|+..
T Consensus 125 ~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~--~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~ 202 (332)
T KOG1677|consen 125 RKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPS--SENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEP 202 (332)
T ss_pred cCcccccCCcceeeecCccccccCchhhhcCCcccccccc--cchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCc
Confidence 3467888999999999999999 99999999887643221 23467789999999999999999999999999999987
Q ss_pred CCC
Q 011776 372 AMR 374 (477)
Q Consensus 372 ~~~ 374 (477)
...
T Consensus 203 ~~~ 205 (332)
T KOG1677|consen 203 EDR 205 (332)
T ss_pred ccc
Confidence 333
No 3
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=99.39 E-value=1.8e-13 Score=132.43 Aligned_cols=81 Identities=30% Similarity=0.773 Sum_probs=70.1
Q ss_pred CCCcCcccccccCCCCCCCCCCCCCCCchhhhHHHhhcCCCCCCCCCCccchhccccCCCCCCCCCCCCCCCCCCCCCcc
Q 011776 50 HGVPDCVFYMRTGVCGYGDRCRYNHPRNRAAVEAAVRATGDYPDRPGEPICQFYLKTGTCKFGASCKFHHPKHSGGSMSH 129 (477)
Q Consensus 50 p~~~~C~yF~rtG~C~~G~~CkF~H~~~~~~~~~~~r~~~~~Per~k~~~Cr~FlktG~Ck~G~~CkF~H~~~~~~~~~~ 129 (477)
|....|+||...|.|.+|..|+|.|...+ ..+|..|++ |.|.+.+.|...|..+...
T Consensus 204 psavycryynangicgkgaacrfvheptr------------------kticpkfln-grcnkaedcnlsheldprr---- 260 (377)
T KOG1492|consen 204 PSAVYCRYYNANGICGKGAACRFVHEPTR------------------KTICPKFLN-GRCNKAEDCNLSHELDPRR---- 260 (377)
T ss_pred CceeEEEEecCCCcccCCceeeeeccccc------------------cccChHHhc-CccCchhcCCcccccCccc----
Confidence 46678999999999999999999997765 258999997 9999999999999887421
Q ss_pred cCCcccCCCCCCCCccccccccCCCCCCCCCCccCCCCC
Q 011776 130 VPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQP 168 (477)
Q Consensus 130 ~~ln~~g~P~R~~~~~C~~y~ktG~Ck~G~~CrF~H~~~ 168 (477)
.+.|+||+- |+|.+ .+|+|.|..-
T Consensus 261 -------------ipacryfll-gkcnn-pncryvhihy 284 (377)
T KOG1492|consen 261 -------------IPACRYFLL-GKCNN-PNCRYVHIHY 284 (377)
T ss_pred -------------cchhhhhhh-ccCCC-CCceEEEEee
Confidence 357999997 99998 9999999765
No 4
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=99.31 E-value=2.8e-12 Score=131.27 Aligned_cols=67 Identities=21% Similarity=0.172 Sum_probs=44.8
Q ss_pred ccccccccCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCcCCCCCC
Q 011776 301 PECQYFLKTGDCKFGSS-CRFHHPRDRVVPRTNCALSPLGLPLRPGAQPCTFYLQNGRCKFGATCKFDHPMG 371 (477)
Q Consensus 301 ~~C~~y~ktG~C~~G~~-Crf~Hp~~~~~~~~~~~l~~~glP~rpg~~~C~~y~~~G~CkfG~~CkF~Hp~~ 371 (477)
++|..|+ .|.|..|.. |.+.|+.-.....- .+....-+.|.+..++.+|.. +.|.....|++.+...
T Consensus 159 ~~c~~y~-~gfC~~g~q~c~~~hp~~~~~~~~--~~~~q~~~~~~~~~~~~~~~~-~~~~k~~~~~~~~~~~ 226 (325)
T KOG1040|consen 159 VLCPPYN-AGFCPKGPQRCDMLHPEFQQPPFH--QGSVQHPPQRQSQQPGKISGE-EKIHKLLQDKQLPQQH 226 (325)
T ss_pred cCCCchh-hhhccCCCCcccccCCCCCCChhh--ccccCCCCCCCCcCccccccc-cccchhhhhhhhhHHH
Confidence 4477775 478888877 88888655432210 111122356777888888886 8888888899888764
No 5
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=99.18 E-value=1.5e-11 Score=124.35 Aligned_cols=219 Identities=22% Similarity=0.408 Sum_probs=115.9
Q ss_pred ccchhccccCCCCCCCC-CCCCCCCCCCCCCcccCCcccCCCCCCCCccccccccCCCCCCCCCCccCCCCCC-CCCCCC
Q 011776 98 PICQFYLKTGTCKFGAS-CKFHHPKHSGGSMSHVPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQPA-GTSLPA 175 (477)
Q Consensus 98 ~~Cr~FlktG~Ck~G~~-CkF~H~~~~~~~~~~~~ln~~g~P~R~~~~~C~~y~ktG~Ck~G~~CrF~H~~~~-~~~~~~ 175 (477)
.+||.|++ +.|++|++ |||.|+..... ++-+ ....|.+|+| |.|.+ ++|||.|+... +.++-.
T Consensus 38 eVCReF~r-n~C~R~d~~CkfaHP~~~~~----V~~g--------~v~aC~Ds~k-grCsR-~nCkylHpp~hlkdql~i 102 (331)
T KOG2494|consen 38 EVCREFLR-NTCSRGDRECKFAHPPKNCQ----VSNG--------RVIACFDSQK-GRCSR-ENCKYLHPPQHLKDQLKI 102 (331)
T ss_pred HHHHHHHh-ccccCCCccccccCCCCCCC----ccCC--------eEEEEecccc-CccCc-ccceecCCChhhhhhhhh
Confidence 58999999 99999998 99999876322 1111 1246999998 99999 88999998663 333333
Q ss_pred CCCCCCCCCCCCCCCCccccCCCCCceeecC-CCCCcCCcccCCCCccccCCCCcCCCCCCCCccCCCCCCCCCCCCCCC
Q 011776 176 SAPQFYPPVQSPTVPMAEQYGGASTSLRVAR-PPLLASSYVQGAYGPVLFSPGVVPFSGWNPYSASVSPVLSPGAQPAVG 254 (477)
Q Consensus 176 ~~~~~~p~~qs~s~ps~~~ygg~~~~~~~~r-~~~~pg~~~qg~y~p~~~~~g~~p~~gw~pY~~~~~p~~~~~~~~~~~ 254 (477)
.+.....-.....+-+.++..+ ....+-+ +.|..+.+. +.++.-.+++|...+ |. ...+...+-
T Consensus 103 ngrn~l~lq~~~aA~~~q~~~~--~g~Pi~~v~~f~~~~~~-----------~g~~~~s~~~y~~~~-Pg-~~vp~~~~p 167 (331)
T KOG2494|consen 103 NGRNNLILQKTAAAMLAQQMQG--PGTPICSVPMFATGPCL-----------GGNTACSYWPYLPPV-PG-GLVPADGLP 167 (331)
T ss_pred cccccHHHHHHHHhhhcccccC--CCccccccccccccccc-----------cCCCccccccccCCC-CC-CCCCCcCCC
Confidence 3322110000000001111000 0000001 111111111 222222333444322 00 000000000
Q ss_pred cccccccccCCCCCCcccCCCCCCCCCCCCCCCCCcccCCCCCCCCccccccccCCCCCCCCC-CCCCCCCCCCCCCCCC
Q 011776 255 ATSLYGVTQISSSMPALAGLYPSLPSSAGPSSSGQMEQSFPERPGEPECQYFLKTGDCKFGSS-CRFHHPRDRVVPRTNC 333 (477)
Q Consensus 255 ~~~~y~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~Perp~~~~C~~y~ktG~C~~G~~-Crf~Hp~~~~~~~~~~ 333 (477)
...+|..... .++......++.....++.++|+- ..|.|..++. |+|.|+.+.+....+.
T Consensus 168 ~~~~~~~g~p-----------------~v~~~~~~~~~k~~r~~~~e~~~~--~~gn~~r~e~d~~f~~~~k~~~~~s~~ 228 (331)
T KOG2494|consen 168 TTPVFVPGGP-----------------GVPGPGLVGGQKLLRSDRLEVCRE--QRGNCRRGEQDAQFAHPAKSIMIDSND 228 (331)
T ss_pred CCccccCCCC-----------------cccccccccccccccCCCCCCCcc--cccccccchhHHHHhhhhhhhhcccCC
Confidence 1111111000 111111112233344455677888 3688988865 9999999988777665
Q ss_pred CCCCCCCCCCCCCCCCccccccccCCCCCCCcCCCCCCCCCCCC
Q 011776 334 ALSPLGLPLRPGAQPCTFYLQNGRCKFGATCKFDHPMGAMRYSP 377 (477)
Q Consensus 334 ~l~~~glP~rpg~~~C~~y~~~G~CkfG~~CkF~Hp~~~~~~~~ 377 (477)
.. ...|.-|.+ |+|- -++||+.|+.....++-
T Consensus 229 ~t----------~~~~~~~t~-~~~~-~en~~~~~~~~h~~~~~ 260 (331)
T KOG2494|consen 229 NT----------VEVCLRYTK-GRCE-TENCKYFHAPAHDQASA 260 (331)
T ss_pred Cc----------chhcccccc-ceec-hhcccccCchHHHHHHH
Confidence 55 456999987 9997 67999999998877753
No 6
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=99.10 E-value=8.5e-11 Score=120.45 Aligned_cols=86 Identities=30% Similarity=0.713 Sum_probs=69.7
Q ss_pred CCcCccccccc-CCCCCCCCCCCCCCCchhhhHHHhhcCCCCCCCCCCccchhccccCCCCCCCCCCCCCCCCCCCCCcc
Q 011776 51 GVPDCVFYMRT-GVCGYGDRCRYNHPRNRAAVEAAVRATGDYPDRPGEPICQFYLKTGTCKFGASCKFHHPKHSGGSMSH 129 (477)
Q Consensus 51 ~~~~C~yF~rt-G~C~~G~~CkF~H~~~~~~~~~~~r~~~~~Per~k~~~Cr~FlktG~Ck~G~~CkF~H~~~~~~~~~~ 129 (477)
+...|.++.+. -.|.+|..|.+.|...+ ...+..+|+||++ |.|++|+.|.|+|..+-.
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~vcK~~l~-glC~kgD~C~Flhe~~~~----- 103 (325)
T KOG1040|consen 44 GRATCEFNESREKPCERGPICPKSHNDVS--------------DSRGKVVCKHWLR-GLCKKGDQCEFLHEYDLT----- 103 (325)
T ss_pred ccchhcccccCCCCccCCCCCccccCCcc--------------ccCCceeehhhhh-hhhhccCcCcchhhhhhc-----
Confidence 45778888631 36899999999997642 1245689999999 999999999999987421
Q ss_pred cCCcccCCCCCCCCccccccccCCCCCCCCCCccCCCCC
Q 011776 130 VPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQP 168 (477)
Q Consensus 130 ~~ln~~g~P~R~~~~~C~~y~ktG~Ck~G~~CrF~H~~~ 168 (477)
..++|.||..+|.|.+|..|.|.|..+
T Consensus 104 ------------k~rec~ff~~~g~c~~~~~c~y~h~dp 130 (325)
T KOG1040|consen 104 ------------KMRECKFFSLFGECTNGKDCPYLHGDP 130 (325)
T ss_pred ------------ccccccccccccccccccCCcccCCCh
Confidence 135799999999999999999999986
No 7
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=98.89 E-value=1.5e-09 Score=105.49 Aligned_cols=54 Identities=30% Similarity=0.776 Sum_probs=46.9
Q ss_pred CCCccchhccccCCCCCCCCCCCCCCCCCCCCCcccCCcccCCCCCCCCccccccccCCCCCCCCCCccCCCCC
Q 011776 95 PGEPICQFYLKTGTCKFGASCKFHHPKHSGGSMSHVPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQP 168 (477)
Q Consensus 95 ~k~~~Cr~FlktG~Ck~G~~CkF~H~~~~~~~~~~~~ln~~g~P~R~~~~~C~~y~ktG~Ck~G~~CrF~H~~~ 168 (477)
+...-|+||...|.|-+|..|+|.|.... ..+|+.|+. |.|.....|.+.|...
T Consensus 204 psavycryynangicgkgaacrfvheptr-------------------kticpkfln-grcnkaedcnlsheld 257 (377)
T KOG1492|consen 204 PSAVYCRYYNANGICGKGAACRFVHEPTR-------------------KTICPKFLN-GRCNKAEDCNLSHELD 257 (377)
T ss_pred CceeEEEEecCCCcccCCceeeeeccccc-------------------cccChHHhc-CccCchhcCCcccccC
Confidence 34568999999999999999999997652 358999997 9999999999999876
No 8
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=98.70 E-value=6.4e-08 Score=97.56 Aligned_cols=193 Identities=18% Similarity=0.353 Sum_probs=125.0
Q ss_pred CCcCcccccccCCCCCCCCCCCCCCCchhhhHHHhhcCCCCCCCCCCccchhccccCCCCCCCCCCCCCCCCCCCCCc--
Q 011776 51 GVPDCVFYMRTGVCGYGDRCRYNHPRNRAAVEAAVRATGDYPDRPGEPICQFYLKTGTCKFGASCKFHHPKHSGGSMS-- 128 (477)
Q Consensus 51 ~~~~C~yF~rtG~C~~G~~CkF~H~~~~~~~~~~~r~~~~~Per~k~~~Cr~FlktG~Ck~G~~CkF~H~~~~~~~~~-- 128 (477)
.++.|+--...+.|++++.|.|+|...... ....+-+.++.-|..|++-+.|.++.+|-|.|-........
T Consensus 114 kt~~l~ss~~~~~~~~p~~n~fahs~~iss-------l~~~~~K~kt~slev~in~~~vp~s~~~~~~slP~t~~~~q~l 186 (351)
T COG5063 114 KTEMLRSSTEIPYCRYPDKNPFAHSKAISS-------LAQTHPKYKTESLEVFINPGYVPYSKRCCFISLPLTDINLQPL 186 (351)
T ss_pred cchhhhccccccccccCCCCcCCCcccccc-------ccccCccccccceeEEecCCccccccccccccccccccCcchh
Confidence 344565544458999999999999875432 12344567788999999999999999999998654221100
Q ss_pred -cc-------------CCcccCC--------------CCCCC-CccccccccCCCCCC---CCCCccC---CCCCCCCCC
Q 011776 129 -HV-------------PLNIYGY--------------PLRPG-EKECSYYLKTGQCKF---GITCKFH---HPQPAGTSL 173 (477)
Q Consensus 129 -~~-------------~ln~~g~--------------P~R~~-~~~C~~y~ktG~Ck~---G~~CrF~---H~~~~~~~~ 173 (477)
.+ ..+...- +.+.. ..+|.-|...|.|++ |+.|.|+ |.... +
T Consensus 187 ~~rkpks~~~~~s~t~~kes~a~P~~~~~~~~~e~n~~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~---l 263 (351)
T COG5063 187 SQRKPKSGKNCTSYTLGKESDAHPHDELIYQKQEQNKPLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNE---L 263 (351)
T ss_pred hccCcccCcCccccccccccccCchhhhhhhhhhccchhhcCCHHHhhccCcCCCCcccccccccccccccccccc---c
Confidence 00 0000000 11111 157998888899999 9999888 76331 0
Q ss_pred CCCCCCCCCCCCCCCCCCccccCCCCCceeecCCCCCcCCcccCCCCccccCCCCcCCCCCCCCccCCCCCCCCCCCCCC
Q 011776 174 PASAPQFYPPVQSPTVPMAEQYGGASTSLRVARPPLLASSYVQGAYGPVLFSPGVVPFSGWNPYSASVSPVLSPGAQPAV 253 (477)
Q Consensus 174 ~~~~~~~~p~~qs~s~ps~~~ygg~~~~~~~~r~~~~pg~~~qg~y~p~~~~~g~~p~~gw~pY~~~~~p~~~~~~~~~~ 253 (477)
.
T Consensus 264 ~------------------------------------------------------------------------------- 264 (351)
T COG5063 264 K------------------------------------------------------------------------------- 264 (351)
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CcccccccccCCCCCCcccCCCCCCCCCCCCCCCCCcccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCC-CC
Q 011776 254 GATSLYGVTQISSSMPALAGLYPSLPSSAGPSSSGQMEQSFPERPGEPECQYFLKTGDCKFGSSCRFHHPRDRVVPR-TN 332 (477)
Q Consensus 254 ~~~~~y~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~Perp~~~~C~~y~ktG~C~~G~~Crf~Hp~~~~~~~-~~ 332 (477)
.+.+.+.| .+..|.-|.+-|.|.||..|.|.|--+....- .+
T Consensus 265 ---------------------------------~k~k~~~f----rTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~~~~ 307 (351)
T COG5063 265 ---------------------------------SKKKKQNF----RTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYEE 307 (351)
T ss_pred ---------------------------------cccccccc----ccCCccchhhcccCccccccccccCChhhcccccc
Confidence 00011111 13559999999999999999999954432111 11
Q ss_pred CCCCCCCCCCCCCCCCCccccccccCCCCCCCcCCCCCCCCCCC
Q 011776 333 CALSPLGLPLRPGAQPCTFYLQNGRCKFGATCKFDHPMGAMRYS 376 (477)
Q Consensus 333 ~~l~~~glP~rpg~~~C~~y~~~G~CkfG~~CkF~Hp~~~~~~~ 376 (477)
..|.- ...+|.-++++|.|++|-+|.|.|-.-.++++
T Consensus 308 ~~~~y-------~~~~crt~~~~g~~p~g~~~c~~~dkkn~~~s 344 (351)
T COG5063 308 ASLGY-------LDGPCRTRAKGGAFPSGGAVCKSFDKKNLDFS 344 (351)
T ss_pred ccccc-------cccccccccccCccCCCCchhhccccchhhhh
Confidence 11111 14579999999999999999999988777764
No 9
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=98.69 E-value=2.4e-08 Score=101.53 Aligned_cols=103 Identities=28% Similarity=0.567 Sum_probs=70.4
Q ss_pred CcCcccccccCCCCCCCC-CCCCCCCchhhhHHHhhcCCCCCCCCCCccchhccccCCCCCCCCCCCCCCCCCCCCCc--
Q 011776 52 VPDCVFYMRTGVCGYGDR-CRYNHPRNRAAVEAAVRATGDYPDRPGEPICQFYLKTGTCKFGASCKFHHPKHSGGSMS-- 128 (477)
Q Consensus 52 ~~~C~yF~rtG~C~~G~~-CkF~H~~~~~~~~~~~r~~~~~Per~k~~~Cr~FlktG~Ck~G~~CkF~H~~~~~~~~~-- 128 (477)
.++||.|+| |.|++|++ |||+|+.....+ +.-+-..|.+|++ |.|. .++|||+|+.....+..
T Consensus 37 ~eVCReF~r-n~C~R~d~~CkfaHP~~~~~V-----------~~g~v~aC~Ds~k-grCs-R~nCkylHpp~hlkdql~i 102 (331)
T KOG2494|consen 37 LEVCREFLR-NTCSRGDRECKFAHPPKNCQV-----------SNGRVIACFDSQK-GRCS-RENCKYLHPPQHLKDQLKI 102 (331)
T ss_pred HHHHHHHHh-ccccCCCccccccCCCCCCCc-----------cCCeEEEEecccc-CccC-cccceecCCChhhhhhhhh
Confidence 468999999 99999999 999999875433 1223368999998 9999 78899999887532210
Q ss_pred ----ccCCcc------cCCCCCCCCcccc--ccccCCCCCCCC-CCccCCCCCC
Q 011776 129 ----HVPLNI------YGYPLRPGEKECS--YYLKTGQCKFGI-TCKFHHPQPA 169 (477)
Q Consensus 129 ----~~~ln~------~g~P~R~~~~~C~--~y~ktG~Ck~G~-~CrF~H~~~~ 169 (477)
...+.. .+.+.-+++++|. .|. ++.|.-|. .|+|.|....
T Consensus 103 ngrn~l~lq~~~aA~~~q~~~~~g~Pi~~v~~f~-~~~~~~g~~~~s~~~y~~~ 155 (331)
T KOG2494|consen 103 NGRNNLILQKTAAAMLAQQMQGPGTPICSVPMFA-TGPCLGGNTACSYWPYLPP 155 (331)
T ss_pred cccccHHHHHHHHhhhcccccCCCcccccccccc-ccccccCCCccccccccCC
Confidence 000000 0111124677888 554 47888776 5999888773
No 10
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=98.66 E-value=2.5e-07 Score=93.52 Aligned_cols=88 Identities=25% Similarity=0.520 Sum_probs=69.4
Q ss_pred CCcCcccccccCCCCCCCCCCCCCCCchhhhHHHhhcCCCCCCCCCCccchhccccCCCCCCCCCCCCCCCCCCCCCccc
Q 011776 51 GVPDCVFYMRTGVCGYGDRCRYNHPRNRAAVEAAVRATGDYPDRPGEPICQFYLKTGTCKFGASCKFHHPKHSGGSMSHV 130 (477)
Q Consensus 51 ~~~~C~yF~rtG~C~~G~~CkF~H~~~~~~~~~~~r~~~~~Per~k~~~Cr~FlktG~Ck~G~~CkF~H~~~~~~~~~~~ 130 (477)
.+..|.+|+-.+.+.....|.+.|.... -....+|++|+. |.|+.+..|.|+|..+-..
T Consensus 73 n~~~~~~~~~~~~~~~~~s~~~~~~~~~---------------~~s~V~c~~~~~-g~c~s~~~c~~lh~~d~~~----- 131 (285)
T COG5084 73 NTVACISRNFNSIRGSRLSTPNNHVNPV---------------LSSSVVCKFFLR-GLCKSGFSCEFLHEYDLRS----- 131 (285)
T ss_pred cccccccccccCCccccccCCccccCcc---------------ccCCcccchhcc-ccCcCCCccccccCCCccc-----
Confidence 5667999988777777779999996643 123468999998 9999999999999876321
Q ss_pred CCcccCCCCCCCCccccccccCCCCCCCCCCccCCCCCC
Q 011776 131 PLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQPA 169 (477)
Q Consensus 131 ~ln~~g~P~R~~~~~C~~y~ktG~Ck~G~~CrF~H~~~~ 169 (477)
.-...|++|...|.|..|..|.+.|.++.
T Consensus 132 ----------s~~~~c~~Fs~~G~cs~g~~c~~~h~dp~ 160 (285)
T COG5084 132 ----------SQGPPCRSFSLKGSCSSGPSCGYSHIDPD 160 (285)
T ss_pred ----------ccCCCcccccccceeccCCCCCccccCcc
Confidence 01246999966699999999999999953
No 11
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=98.47 E-value=5.3e-07 Score=91.05 Aligned_cols=180 Identities=18% Similarity=0.347 Sum_probs=108.0
Q ss_pred CCCccchhccccCCCCCCCCCCCCCCCCCCCCCcccCCcccCCCCCCCCccccccccCCCCCCCCCCccCCCCCCCCCCC
Q 011776 95 PGEPICQFYLKTGTCKFGASCKFHHPKHSGGSMSHVPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQPAGTSLP 174 (477)
Q Consensus 95 ~k~~~Cr~FlktG~Ck~G~~CkF~H~~~~~~~~~~~~ln~~g~P~R~~~~~C~~y~ktG~Ck~G~~CrF~H~~~~~~~~~ 174 (477)
.++++|+.-..-+.|++++.|.|+|...... ....+.|.+++-|..|+..+.|+++.+|-|.|.....+.+-
T Consensus 113 ~kt~~l~ss~~~~~~~~p~~n~fahs~~iss--------l~~~~~K~kt~slev~in~~~vp~s~~~~~~slP~t~~~~q 184 (351)
T COG5063 113 YKTEMLRSSTEIPYCRYPDKNPFAHSKAISS--------LAQTHPKYKTESLEVFINPGYVPYSKRCCFISLPLTDINLQ 184 (351)
T ss_pred ccchhhhccccccccccCCCCcCCCcccccc--------ccccCccccccceeEEecCCccccccccccccccccccCcc
Confidence 3566787753337999999999999876321 12334455677899999999999999999998766543321
Q ss_pred CCCCCCCCCCCCCCCCCccccCCCCCceeecCCCCCcCCcccCCCCccccCCCCcCCCCCCCCccCCCCCCCCCCCCCCC
Q 011776 175 ASAPQFYPPVQSPTVPMAEQYGGASTSLRVARPPLLASSYVQGAYGPVLFSPGVVPFSGWNPYSASVSPVLSPGAQPAVG 254 (477)
Q Consensus 175 ~~~~~~~p~~qs~s~ps~~~ygg~~~~~~~~r~~~~pg~~~qg~y~p~~~~~g~~p~~gw~pY~~~~~p~~~~~~~~~~~ 254 (477)
.. ...+. .-++..++....|...+
T Consensus 185 ~l-----~~rkp-------ks~~~~~s~t~~kes~a-------------------------------------------- 208 (351)
T COG5063 185 PL-----SQRKP-------KSGKNCTSYTLGKESDA-------------------------------------------- 208 (351)
T ss_pred hh-----hccCc-------ccCcCcccccccccccc--------------------------------------------
Confidence 00 00000 00111111221111000
Q ss_pred cccccccccCCCCCCcccCCCCCCCCCCCCCCCCCcccCCCCCCC-CccccccccCCCCCC---CCCCCCC---CCCCCC
Q 011776 255 ATSLYGVTQISSSMPALAGLYPSLPSSAGPSSSGQMEQSFPERPG-EPECQYFLKTGDCKF---GSSCRFH---HPRDRV 327 (477)
Q Consensus 255 ~~~~y~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~Perp~-~~~C~~y~ktG~C~~---G~~Crf~---Hp~~~~ 327 (477)
.+-..-.| + .+++..+.+.+ -.+|.-|...|.|++ |+.|.|. |-...+
T Consensus 209 -------------~P~~~~~~-----------~-~~e~n~~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l 263 (351)
T COG5063 209 -------------HPHDELIY-----------Q-KQEQNKPLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNEL 263 (351)
T ss_pred -------------Cchhhhhh-----------h-hhhccchhhcCCHHHhhccCcCCCCccccccccccccccccccccc
Confidence 00000000 0 01122222222 268999999999999 9999999 865544
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCcCCCCCC
Q 011776 328 VPRTNCALSPLGLPLRPGAQPCTFYLQNGRCKFGATCKFDHPMG 371 (477)
Q Consensus 328 ~~~~~~~l~~~glP~rpg~~~C~~y~~~G~CkfG~~CkF~Hp~~ 371 (477)
..++...+ -...+|..|++-|+|+||.+|-|.|-.+
T Consensus 264 ~~k~k~~~--------frTePcinwe~sGyc~yg~Rc~F~hgd~ 299 (351)
T COG5063 264 KSKKKKQN--------FRTEPCINWEKSGYCPYGLRCCFKHGDD 299 (351)
T ss_pred cccccccc--------cccCCccchhhcccCccccccccccCCh
Confidence 43332211 1246799999999999999999999876
No 12
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=98.42 E-value=6.4e-08 Score=102.73 Aligned_cols=59 Identities=24% Similarity=0.661 Sum_probs=54.0
Q ss_pred CccccccccC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCcCCC
Q 011776 300 EPECQYFLKT--GDCKFGSSCRFHHPRDRVVPRTNCALSPLGLPLRPGAQPCTFYLQNGRCKFGATCKFDH 368 (477)
Q Consensus 300 ~~~C~~y~kt--G~C~~G~~Crf~Hp~~~~~~~~~~~l~~~glP~rpg~~~C~~y~~~G~CkfG~~CkF~H 368 (477)
..+|+-...+ ..|+||++|||.||++++++++..+| .+.|++|...|.|+||.+|||.-
T Consensus 76 n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~Di----------g~~Cp~f~s~G~Cp~G~~CRFl~ 136 (614)
T KOG2333|consen 76 NRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAPDI----------GPSCPVFESLGFCPYGFKCRFLG 136 (614)
T ss_pred hccChHhhcCCCccCcccccccccccHHHHHhccCccc----------CCccceeeccccCCccceeehhh
Confidence 5789999887 47999999999999999999999999 46799999999999999999954
No 13
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=3.4e-07 Score=96.83 Aligned_cols=82 Identities=24% Similarity=0.677 Sum_probs=63.3
Q ss_pred CcCcccccccCCCCCCCCCCCCCCCchhhhHHHhhcCCCCCCCCCCccchhccccCCCCCCCCCCCCCCCCCCCCCcccC
Q 011776 52 VPDCVFYMRTGVCGYGDRCRYNHPRNRAAVEAAVRATGDYPDRPGEPICQFYLKTGTCKFGASCKFHHPKHSGGSMSHVP 131 (477)
Q Consensus 52 ~~~C~yF~rtG~C~~G~~CkF~H~~~~~~~~~~~r~~~~~Per~k~~~Cr~FlktG~Ck~G~~CkF~H~~~~~~~~~~~~ 131 (477)
.++|.||+- -.|++++.|.|.|...- +....+|++|+..-.|+. .|+|.|..-...
T Consensus 3 ~~dcyff~y-s~cKk~d~c~~rh~E~a---------------l~n~t~C~~w~~~~~C~k--~C~YRHSe~~~k------ 58 (667)
T KOG4791|consen 3 GEDCYFFFY-STCKKGDSCPFRHCEAA---------------LGNETVCTLWQEGRCCRK--VCRYRHSEIDKK------ 58 (667)
T ss_pred cccchhhhh-hhhhccCcCcchhhHHH---------------hcCcchhhhhhhcCcccc--cccchhhHHhhh------
Confidence 357999976 89999999999996543 234578999998555664 999999764211
Q ss_pred CcccCCCCCCCCccccccccCCC-CCCCCCCccCCCCC
Q 011776 132 LNIYGYPLRPGEKECSYYLKTGQ-CKFGITCKFHHPQP 168 (477)
Q Consensus 132 ln~~g~P~R~~~~~C~~y~ktG~-Ck~G~~CrF~H~~~ 168 (477)
..+..|.++.+ +. |.+ .+|-|.|..+
T Consensus 59 ---------r~e~~CYwe~~-p~gC~k-~~CgfRH~~p 85 (667)
T KOG4791|consen 59 ---------RSEIPCYWENQ-PTGCQK-LNCGFRHNRP 85 (667)
T ss_pred ---------cCcccceeecC-CCccCC-CccccccCCC
Confidence 13567999998 66 999 9999999765
No 14
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=98.31 E-value=6.4e-07 Score=90.57 Aligned_cols=87 Identities=29% Similarity=0.680 Sum_probs=71.5
Q ss_pred CCcCcccccccCCCCCCCCCCCCCCCchhhhHHHhhcCCCCCCCCCCccchhccccCCCCCCCCCCCCCCCCCCCCCccc
Q 011776 51 GVPDCVFYMRTGVCGYGDRCRYNHPRNRAAVEAAVRATGDYPDRPGEPICQFYLKTGTCKFGASCKFHHPKHSGGSMSHV 130 (477)
Q Consensus 51 ~~~~C~yF~rtG~C~~G~~CkF~H~~~~~~~~~~~r~~~~~Per~k~~~Cr~FlktG~Ck~G~~CkF~H~~~~~~~~~~~ 130 (477)
...+|++|.+ |.|+.+..|.|+|..+... ...+.|++|...|.|..|..|.|.|......
T Consensus 103 s~V~c~~~~~-g~c~s~~~c~~lh~~d~~~--------------s~~~~c~~Fs~~G~cs~g~~c~~~h~dp~~~----- 162 (285)
T COG5084 103 SSVVCKFFLR-GLCKSGFSCEFLHEYDLRS--------------SQGPPCRSFSLKGSCSSGPSCGYSHIDPDSF----- 162 (285)
T ss_pred CCcccchhcc-ccCcCCCccccccCCCccc--------------ccCCCcccccccceeccCCCCCccccCcccc-----
Confidence 5678999999 9999999999999887531 1357899994459999999999999864321
Q ss_pred CCcccCCCCCCCCcccccccc--CCCCCCCCCCccCCCCCC
Q 011776 131 PLNIYGYPLRPGEKECSYYLK--TGQCKFGITCKFHHPQPA 169 (477)
Q Consensus 131 ~ln~~g~P~R~~~~~C~~y~k--tG~Ck~G~~CrF~H~~~~ 169 (477)
...|.+|.+ ++.|.+|..|+|.|....
T Consensus 163 ------------~~~~~~~~~~~~~f~p~g~~c~~~H~~~~ 191 (285)
T COG5084 163 ------------AGNCDQYSGATYGFCPLGASCKFSHTLKR 191 (285)
T ss_pred ------------cccccccCcccccccCCCCcccccccccc
Confidence 246888874 699999999999999874
No 15
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=98.22 E-value=3.6e-07 Score=61.16 Aligned_cols=26 Identities=42% Similarity=1.197 Sum_probs=20.9
Q ss_pred CCccchhccccCCCCCCCCCCCCCCC
Q 011776 96 GEPICQFYLKTGTCKFGASCKFHHPK 121 (477)
Q Consensus 96 k~~~Cr~FlktG~Ck~G~~CkF~H~~ 121 (477)
++.+|++|+++|.|++|++|+|+|+.
T Consensus 2 k~~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 2 KTKLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp TSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred ccccChhhccCCccCCCCCcCccCCC
Confidence 57899999999999999999999973
No 16
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=98.19 E-value=3.3e-07 Score=61.32 Aligned_cols=26 Identities=46% Similarity=1.104 Sum_probs=21.1
Q ss_pred CCCcCcccccccCCCCCCCCCCCCCC
Q 011776 50 HGVPDCVFYMRTGVCGYGDRCRYNHP 75 (477)
Q Consensus 50 p~~~~C~yF~rtG~C~~G~~CkF~H~ 75 (477)
+++++|++|+++|.|++|++|+|+|+
T Consensus 1 ~k~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 1 YKTKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp TTSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred CccccChhhccCCccCCCCCcCccCC
Confidence 36789999999999999999999996
No 17
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=97.96 E-value=1e-05 Score=87.16 Aligned_cols=88 Identities=24% Similarity=0.423 Sum_probs=65.2
Q ss_pred CCCCCCCCCCCCCCCchhhhHHHhhcCCCCCCCCCCccchhccccCCCCCCCCCCCCCCCCCCCCCcccCCcccCCCCCC
Q 011776 62 GVCGYGDRCRYNHPRNRAAVEAAVRATGDYPDRPGEPICQFYLKTGTCKFGASCKFHHPKHSGGSMSHVPLNIYGYPLRP 141 (477)
Q Consensus 62 G~C~~G~~CkF~H~~~~~~~~~~~r~~~~~Per~k~~~Cr~FlktG~Ck~G~~CkF~H~~~~~~~~~~~~ln~~g~P~R~ 141 (477)
+.|.-+..|.|.|+.++.+.+ +-..| ...-..|..|.+ |.|+.||+|.|.|..-+-. =-|.|.
T Consensus 207 ~~shDwteCPf~HpgEkARRR----DPRky--hYs~tpCPefrk-G~C~rGD~CEyaHgvfEcw----------LHPa~Y 269 (528)
T KOG1595|consen 207 PRSHDWTECPFAHPGEKARRR----DPRKY--HYSSTPCPEFRK-GSCERGDSCEYAHGVFECW----------LHPARY 269 (528)
T ss_pred ccCCCcccCCccCCCcccccC----Ccccc--cccCccCccccc-CCCCCCCccccccceehhh----------cCHHHh
Confidence 467788999999987763221 10111 134578999998 9999999999999886532 225566
Q ss_pred CCccccccccCCCCCCCCCCccCCCCCCC
Q 011776 142 GEKECSYYLKTGQCKFGITCKFHHPQPAG 170 (477)
Q Consensus 142 ~~~~C~~y~ktG~Ck~G~~CrF~H~~~~~ 170 (477)
.+..|++= |.|++ .-|-|+|....-
T Consensus 270 RT~~CkDg---~~C~R-rvCfFAH~~eqL 294 (528)
T KOG1595|consen 270 RTRKCKDG---GYCPR-RVCFFAHSPEQL 294 (528)
T ss_pred ccccccCC---CCCcc-ceEeeecChHHh
Confidence 78889994 89999 999999987743
No 18
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=97.58 E-value=1.9e-05 Score=79.68 Aligned_cols=78 Identities=31% Similarity=0.689 Sum_probs=51.9
Q ss_pred CCCCccchhccccCCCCCCCCCCCCCCCCCCCCCcccCC-------------------cccCCCCCCCCccccccc----
Q 011776 94 RPGEPICQFYLKTGTCKFGASCKFHHPKHSGGSMSHVPL-------------------NIYGYPLRPGEKECSYYL---- 150 (477)
Q Consensus 94 r~k~~~Cr~FlktG~Ck~G~~CkF~H~~~~~~~~~~~~l-------------------n~~g~P~R~~~~~C~~y~---- 150 (477)
.++..+|.||.. |.|..|+.|+|+|+........-.++ .-.+-+..-...+|+||+
T Consensus 89 DPKSvvCafFk~-g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLeAvE 167 (343)
T KOG1763|consen 89 DPKSVVCAFFKQ-GTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLEAVE 167 (343)
T ss_pred CchHHHHHHHhc-cCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHHHHh
Confidence 467889999998 99999999999999873221100000 001111111346899997
Q ss_pred --cCC---CCCCCC-CCccCCCCCCCCC
Q 011776 151 --KTG---QCKFGI-TCKFHHPQPAGTS 172 (477)
Q Consensus 151 --ktG---~Ck~G~-~CrF~H~~~~~~~ 172 (477)
++| .|++|. .|.|.|-.+.+..
T Consensus 168 ~~kYGWfW~CPnGg~~C~YrHaLP~GyV 195 (343)
T KOG1763|consen 168 NGKYGWFWECPNGGDKCIYRHALPEGYV 195 (343)
T ss_pred cCCccceeECCCCCCeeeeeecCCcchh
Confidence 333 399987 8999999987543
No 19
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.57 E-value=5e-05 Score=49.76 Aligned_cols=25 Identities=40% Similarity=1.107 Sum_probs=21.6
Q ss_pred CCccchhccccCCCCCCCCCCCCCCC
Q 011776 96 GEPICQFYLKTGTCKFGASCKFHHPK 121 (477)
Q Consensus 96 k~~~Cr~FlktG~Ck~G~~CkF~H~~ 121 (477)
++.+|++|+ +|.|.+|++|+|+|+.
T Consensus 3 k~~~C~~~~-~g~C~~g~~C~~~H~~ 27 (27)
T smart00356 3 KTELCKFFK-RGYCPYGDRCKFAHPL 27 (27)
T ss_pred CCCcCcCcc-CCCCCCCCCcCCCCcC
Confidence 456899995 5999999999999963
No 20
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=3.2e-05 Score=82.20 Aligned_cols=54 Identities=28% Similarity=0.667 Sum_probs=42.5
Q ss_pred CccchhccccCCCCCCCCCCCCCCCCCCCCCcccCCcccCCCCCCCCccccccccCCCCCCCCCCccCCCCCC
Q 011776 97 EPICQFYLKTGTCKFGASCKFHHPKHSGGSMSHVPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQPA 169 (477)
Q Consensus 97 ~~~Cr~FlktG~Ck~G~~CkF~H~~~~~~~~~~~~ln~~g~P~R~~~~~C~~y~ktG~Ck~G~~CrF~H~~~~ 169 (477)
.+.|.||+. -.|||++.|.|.|..... .....|.+|+..--|+ +.|+|.|-+-.
T Consensus 3 ~~dcyff~y-s~cKk~d~c~~rh~E~al----------------~n~t~C~~w~~~~~C~--k~C~YRHSe~~ 56 (667)
T KOG4791|consen 3 GEDCYFFFY-STCKKGDSCPFRHCEAAL----------------GNETVCTLWQEGRCCR--KVCRYRHSEID 56 (667)
T ss_pred cccchhhhh-hhhhccCcCcchhhHHHh----------------cCcchhhhhhhcCccc--ccccchhhHHh
Confidence 357999997 899999999999987632 1245799999854455 49999998863
No 21
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.51 E-value=7.1e-05 Score=49.02 Aligned_cols=25 Identities=44% Similarity=1.177 Sum_probs=21.7
Q ss_pred CCcCcccccccCCCCCCCCCCCCCCC
Q 011776 51 GVPDCVFYMRTGVCGYGDRCRYNHPR 76 (477)
Q Consensus 51 ~~~~C~yF~rtG~C~~G~~CkF~H~~ 76 (477)
++.+|++| ++|.|.+|++|+|+|+.
T Consensus 3 k~~~C~~~-~~g~C~~g~~C~~~H~~ 27 (27)
T smart00356 3 KTELCKFF-KRGYCPYGDRCKFAHPL 27 (27)
T ss_pred CCCcCcCc-cCCCCCCCCCcCCCCcC
Confidence 46689999 66999999999999963
No 22
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=97.35 E-value=0.00045 Score=76.16 Aligned_cols=42 Identities=19% Similarity=0.419 Sum_probs=28.3
Q ss_pred CCCCCCCCCchhhhHHHhhcCCCCCCCCCCccchhccccCCCCCCCCCCCCCCCCC
Q 011776 68 DRCRYNHPRNRAAVEAAVRATGDYPDRPGEPICQFYLKTGTCKFGASCKFHHPKHS 123 (477)
Q Consensus 68 ~~CkF~H~~~~~~~~~~~r~~~~~Per~k~~~Cr~FlktG~Ck~G~~CkF~H~~~~ 123 (477)
..|.+.|....... .. ..--+.|.|+.. |. ++.|.|.|+...
T Consensus 525 ~~s~s~~s~~~~~l---------tk-~k~l~~Cky~~~---Ct-~a~Ce~~HPtaa 566 (681)
T KOG3702|consen 525 PDSLSRHSEKKNEL---------TK-AKILTRCKYGPA---CT-SAECEFAHPTAA 566 (681)
T ss_pred CcchhhCccccccc---------cc-ceeeccccCCCc---CC-chhhhhcCCcch
Confidence 56778887654321 11 112358999986 99 999999998763
No 23
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=97.29 E-value=6.4e-05 Score=75.98 Aligned_cols=80 Identities=24% Similarity=0.618 Sum_probs=52.9
Q ss_pred CCCCCCCCCcCcccccccCCCCCCCCCCCCCCCchhhhHHHh------hc--------------CCCCCCCCCCccchhc
Q 011776 44 ESYPQRHGVPDCVFYMRTGVCGYGDRCRYNHPRNRAAVEAAV------RA--------------TGDYPDRPGEPICQFY 103 (477)
Q Consensus 44 ~~yp~Rp~~~~C~yF~rtG~C~~G~~CkF~H~~~~~~~~~~~------r~--------------~~~~Per~k~~~Cr~F 103 (477)
..--+.|+..+|.||.. |.|..|+.|+|+|+.....-.... |. ...-|-.....+|+||
T Consensus 84 v~~gvDPKSvvCafFk~-g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfF 162 (343)
T KOG1763|consen 84 VPKGVDPKSVVCAFFKQ-GTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFF 162 (343)
T ss_pred cccCCCchHHHHHHHhc-cCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHH
Confidence 34456678899999977 999999999999987654321100 00 0001111133599999
Q ss_pred ccc------C---CCCCCC-CCCCCCCCCCC
Q 011776 104 LKT------G---TCKFGA-SCKFHHPKHSG 124 (477)
Q Consensus 104 lkt------G---~Ck~G~-~CkF~H~~~~~ 124 (477)
+.. | .|.+|- .|-|.|-....
T Consensus 163 LeAvE~~kYGWfW~CPnGg~~C~YrHaLP~G 193 (343)
T KOG1763|consen 163 LEAVENGKYGWFWECPNGGDKCIYRHALPEG 193 (343)
T ss_pred HHHHhcCCccceeECCCCCCeeeeeecCCcc
Confidence 852 2 399875 89999988743
No 24
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=97.24 E-value=9.7e-05 Score=79.14 Aligned_cols=66 Identities=23% Similarity=0.629 Sum_probs=51.7
Q ss_pred CCccchhcccc--CCCCCCCCCCCCCCCCCCCCCcccCCcccCCCCCCCCccccccccCCCCCCCCCCcc--CCCCCCCC
Q 011776 96 GEPICQFYLKT--GTCKFGASCKFHHPKHSGGSMSHVPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKF--HHPQPAGT 171 (477)
Q Consensus 96 k~~~Cr~Flkt--G~Ck~G~~CkF~H~~~~~~~~~~~~ln~~g~P~R~~~~~C~~y~ktG~Ck~G~~CrF--~H~~~~~~ 171 (477)
...+|.-..++ ..|.||++|+|.|+.....+.+..++. +.|.+|...|.|++|-+||| +|.+..+.
T Consensus 75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~Dig----------~~Cp~f~s~G~Cp~G~~CRFl~aHld~~g~ 144 (614)
T KOG2333|consen 75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAPDIG----------PSCPVFESLGFCPYGFKCRFLGAHLDIEGN 144 (614)
T ss_pred hhccChHhhcCCCccCcccccccccccHHHHHhccCcccC----------CccceeeccccCCccceeehhhcccCcccc
Confidence 45689999986 479999999999998754443333332 46999999999999999999 57766544
No 25
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=96.85 E-value=0.00034 Score=68.97 Aligned_cols=78 Identities=28% Similarity=0.674 Sum_probs=51.7
Q ss_pred CCCCccchhccccCCCCCCCCCCCCCCCCCCCCCcccCC--------cccCCCCCC---CCcccccccc---CC------
Q 011776 94 RPGEPICQFYLKTGTCKFGASCKFHHPKHSGGSMSHVPL--------NIYGYPLRP---GEKECSYYLK---TG------ 153 (477)
Q Consensus 94 r~k~~~Cr~FlktG~Ck~G~~CkF~H~~~~~~~~~~~~l--------n~~g~P~R~---~~~~C~~y~k---tG------ 153 (477)
.++..+|..|+. +.|..|+.|+|+|++.......-.++ ....+-.|| ...+|+||+. +|
T Consensus 82 dpK~~vcalF~~-~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw~W 160 (299)
T COG5252 82 DPKTVVCALFLN-KTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGWGW 160 (299)
T ss_pred CchhHHHHHhcc-CccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCcccee
Confidence 467889999997 99988999999999764321111100 001111233 3478999972 22
Q ss_pred CCCCCC-CCccCCCCCCCCC
Q 011776 154 QCKFGI-TCKFHHPQPAGTS 172 (477)
Q Consensus 154 ~Ck~G~-~CrF~H~~~~~~~ 172 (477)
.|++|. +|.|.|-.+.+.-
T Consensus 161 ~CPng~~~C~y~H~Lp~GyV 180 (299)
T COG5252 161 TCPNGNMRCSYIHKLPDGYV 180 (299)
T ss_pred eCCCCCceeeeeeccCccce
Confidence 399984 8999999987533
No 26
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=96.68 E-value=0.00071 Score=71.16 Aligned_cols=57 Identities=30% Similarity=0.632 Sum_probs=40.0
Q ss_pred CCCCCCCCCCCCchhh------hHHH-----hhcCCCCCCCCCCccchhccccCCCCCCCCCCCCCCCC
Q 011776 65 GYGDRCRYNHPRNRAA------VEAA-----VRATGDYPDRPGEPICQFYLKTGTCKFGASCKFHHPKH 122 (477)
Q Consensus 65 ~~G~~CkF~H~~~~~~------~~~~-----~r~~~~~Per~k~~~Cr~FlktG~Ck~G~~CkF~H~~~ 122 (477)
--|.+|.+-|...... +++. +|-.=.+|.-..+.+|.||+. |.|+|+++|+|+|...
T Consensus 97 L~GsKcsaph~ss~gl~yHna~I~g~E~sarvRVlfl~PTh~sMkpC~ffLe-g~CRF~enCRfSHG~~ 164 (486)
T KOG2185|consen 97 LDGSKCSAPHTSSRGLYYHNARIIGFEGSARVRVLFLTPTHESMKPCKFFLE-GRCRFGENCRFSHGLD 164 (486)
T ss_pred ccCCcccccccCCccceecceeEEeeccccceEEEeecCcchhhccchHhhc-cccccCcccccccCcc
Confidence 4678888888665531 1110 011115566677889999998 9999999999999876
No 27
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=96.29 E-value=0.0014 Score=64.86 Aligned_cols=76 Identities=28% Similarity=0.718 Sum_probs=52.0
Q ss_pred CCCCCCcCcccccccCCCCCCCCCCCCCCCchhhhH--H----HhhcC-CCCC--CCC---CCccchhccc---cC----
Q 011776 47 PQRHGVPDCVFYMRTGVCGYGDRCRYNHPRNRAAVE--A----AVRAT-GDYP--DRP---GEPICQFYLK---TG---- 107 (477)
Q Consensus 47 p~Rp~~~~C~yF~rtG~C~~G~~CkF~H~~~~~~~~--~----~~r~~-~~~P--er~---k~~~Cr~Flk---tG---- 107 (477)
-+.|+..+|..|+. +.|..|+.|+|+|+.++...- . .+|.. ...| +++ ...+|+||+. +|
T Consensus 80 gvdpK~~vcalF~~-~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw 158 (299)
T COG5252 80 GVDPKTVVCALFLN-KTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGW 158 (299)
T ss_pred ccCchhHHHHHhcc-CccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCccc
Confidence 45578899999987 999999999999997664321 1 11111 1222 222 3358999975 23
Q ss_pred --CCCCC-CCCCCCCCCCC
Q 011776 108 --TCKFG-ASCKFHHPKHS 123 (477)
Q Consensus 108 --~Ck~G-~~CkF~H~~~~ 123 (477)
.|.+| .+|-|.|-...
T Consensus 159 ~W~CPng~~~C~y~H~Lp~ 177 (299)
T COG5252 159 GWTCPNGNMRCSYIHKLPD 177 (299)
T ss_pred eeeCCCCCceeeeeeccCc
Confidence 39988 58999998874
No 28
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=96.13 E-value=0.0033 Score=38.95 Aligned_cols=19 Identities=42% Similarity=1.065 Sum_probs=16.9
Q ss_pred CcccccccCCCCCCCCCCCCCC
Q 011776 54 DCVFYMRTGVCGYGDRCRYNHP 75 (477)
Q Consensus 54 ~C~yF~rtG~C~~G~~CkF~H~ 75 (477)
+|+||.. |+++++|.|.|+
T Consensus 1 ~Ck~~~~---C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN---CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC---CCCCCcCccCCc
Confidence 5999965 999999999996
No 29
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=95.71 E-value=0.0059 Score=37.83 Aligned_cols=19 Identities=42% Similarity=1.032 Sum_probs=16.7
Q ss_pred cchhccccCCCCCCCCCCCCCC
Q 011776 99 ICQFYLKTGTCKFGASCKFHHP 120 (477)
Q Consensus 99 ~Cr~FlktG~Ck~G~~CkF~H~ 120 (477)
+|+||.. |+++++|.|.|+
T Consensus 1 ~Ck~~~~---C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN---CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC---CCCCCcCccCCc
Confidence 4998874 999999999995
No 30
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=95.61 E-value=0.035 Score=60.53 Aligned_cols=62 Identities=32% Similarity=0.627 Sum_probs=46.7
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCcCCCCCCCCCCCC
Q 011776 301 PECQYFLKTGDCKFGSSCRFHHPRDRVVPRTNCALSPLGLPLRPGAQPCTFYLQNGRCKFGATCKFDHPMGAMRYSP 377 (477)
Q Consensus 301 ~~C~~y~ktG~C~~G~~Crf~Hp~~~~~~~~~~~l~~~glP~rpg~~~C~~y~~~G~CkfG~~CkF~Hp~~~~~~~~ 377 (477)
..|+-|- +|.|+.||.|.|.|-+-+ +-|. |+|-....|+.- |.|+. .-|.|.|-..-|.-.+
T Consensus 237 tpCPefr-kG~C~rGD~CEyaHgvfE------cwLH----Pa~YRT~~CkDg---~~C~R-rvCfFAH~~eqLR~l~ 298 (528)
T KOG1595|consen 237 TPCPEFR-KGSCERGDSCEYAHGVFE------CWLH----PARYRTRKCKDG---GYCPR-RVCFFAHSPEQLRPLP 298 (528)
T ss_pred ccCcccc-cCCCCCCCccccccceeh------hhcC----HHHhccccccCC---CCCcc-ceEeeecChHHhcccC
Confidence 5699995 599999999999995432 2333 445567779876 89998 7899999987665444
No 31
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=95.54 E-value=0.0056 Score=64.60 Aligned_cols=34 Identities=26% Similarity=0.793 Sum_probs=30.5
Q ss_pred CCCCCCCCCcCcccccccCCCCCCCCCCCCCCCch
Q 011776 44 ESYPQRHGVPDCVFYMRTGVCGYGDRCRYNHPRNR 78 (477)
Q Consensus 44 ~~yp~Rp~~~~C~yF~rtG~C~~G~~CkF~H~~~~ 78 (477)
-.||+-....+|.||+. |.|+|+.+|+|.|....
T Consensus 132 fl~PTh~sMkpC~ffLe-g~CRF~enCRfSHG~~V 165 (486)
T KOG2185|consen 132 FLTPTHESMKPCKFFLE-GRCRFGENCRFSHGLDV 165 (486)
T ss_pred eecCcchhhccchHhhc-cccccCcccccccCccc
Confidence 36788888999999999 99999999999998865
No 32
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.36 E-value=0.014 Score=56.60 Aligned_cols=28 Identities=43% Similarity=0.908 Sum_probs=25.3
Q ss_pred CcCcccccccCCCCCCCCCCCCCCCchh
Q 011776 52 VPDCVFYMRTGVCGYGDRCRYNHPRNRA 79 (477)
Q Consensus 52 ~~~C~yF~rtG~C~~G~~CkF~H~~~~~ 79 (477)
..+|+.|..||.|.||+.|+|+|..++.
T Consensus 141 pdVCKdyk~TGYCGYGDsCKflH~R~D~ 168 (259)
T COG5152 141 PDVCKDYKETGYCGYGDSCKFLHDRSDF 168 (259)
T ss_pred cccccchhhcccccCCchhhhhhhhhhh
Confidence 4579999999999999999999998764
No 33
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=94.19 E-value=0.07 Score=59.48 Aligned_cols=74 Identities=24% Similarity=0.580 Sum_probs=45.6
Q ss_pred CCCCCCCCCCCCCchhhhHHHhhcCCCCCCCCCCccchhccccCCCCCCCCCCCCCCCCCCCCC-cccCCcccCCCCCCC
Q 011776 64 CGYGDRCRYNHPRNRAAVEAAVRATGDYPDRPGEPICQFYLKTGTCKFGASCKFHHPKHSGGSM-SHVPLNIYGYPLRPG 142 (477)
Q Consensus 64 C~~G~~CkF~H~~~~~~~~~~~r~~~~~Per~k~~~Cr~FlktG~Ck~G~~CkF~H~~~~~~~~-~~~~ln~~g~P~R~~ 142 (477)
|++++.|.|.|+ -|+|=. .|. ...|.|.|........ ..++--..+.. -
T Consensus 575 k~fa~~~~ks~p-----------------------~Ck~~~---kCt-asDC~~sH~~~~~pvq~t~ip~~~~~~t---i 624 (681)
T KOG3702|consen 575 KKFASKCLKSHP-----------------------GCKFGK---KCT-ASDCNYSHAGRRIPVQPTRIPPPFPGGT---I 624 (681)
T ss_pred ccccccceeccc-----------------------cccccc---ccc-cccCcccccCCCCCCccccCCCCCCCCC---c
Confidence 667777777774 366655 488 6789999988764111 11110001111 1
Q ss_pred CccccccccCCCCCCCCCCccCCCCCCCC
Q 011776 143 EKECSYYLKTGQCKFGITCKFHHPQPAGT 171 (477)
Q Consensus 143 ~~~C~~y~ktG~Ck~G~~CrF~H~~~~~~ 171 (477)
..+|+|+ +.|++ ..|+|.|++....
T Consensus 625 ~~~CrY~---pnCrn-m~C~F~HPk~cRf 649 (681)
T KOG3702|consen 625 RGLCRYR---PNCRN-MQCKFYHPKTCRF 649 (681)
T ss_pred cccceec---cCcCC-ccccccCCccccc
Confidence 2568887 67888 8888888888643
No 34
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.63 E-value=0.01 Score=59.36 Aligned_cols=29 Identities=24% Similarity=0.505 Sum_probs=25.4
Q ss_pred CCCCccccccccCCCCCCCCCCccCCCCCC
Q 011776 140 RPGEKECSYYLKTGQCKFGITCKFHHPQPA 169 (477)
Q Consensus 140 R~~~~~C~~y~ktG~Ck~G~~CrF~H~~~~ 169 (477)
+..+.+|..|.+ +.|.+|..|.|.|....
T Consensus 149 ~~rea~C~~~e~-~~C~rG~~CnFmH~k~~ 177 (260)
T KOG2202|consen 149 DFREAICGQFER-TECSRGGACNFMHVKRL 177 (260)
T ss_pred chhhhhhccccc-ccCCCCCcCcchhhhhh
Confidence 456789999998 69999999999999864
No 35
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=93.08 E-value=0.033 Score=54.11 Aligned_cols=25 Identities=36% Similarity=0.852 Sum_probs=23.3
Q ss_pred CCCccccccccCCCCCCCcCCCCCC
Q 011776 347 QPCTFYLQNGRCKFGATCKFDHPMG 371 (477)
Q Consensus 347 ~~C~~y~~~G~CkfG~~CkF~Hp~~ 371 (477)
.+|+.|..+|+|-||..|||.|-.+
T Consensus 142 dVCKdyk~TGYCGYGDsCKflH~R~ 166 (259)
T COG5152 142 DVCKDYKETGYCGYGDSCKFLHDRS 166 (259)
T ss_pred ccccchhhcccccCCchhhhhhhhh
Confidence 4799999999999999999999876
No 36
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.28 E-value=0.14 Score=53.69 Aligned_cols=24 Identities=46% Similarity=1.162 Sum_probs=23.1
Q ss_pred ccchhccccCCCCCCCCCCCCCCCC
Q 011776 98 PICQFYLKTGTCKFGASCKFHHPKH 122 (477)
Q Consensus 98 ~~Cr~FlktG~Ck~G~~CkF~H~~~ 122 (477)
.+|+||++ |.|+||+.|+|.|.+.
T Consensus 9 tic~~~~~-g~c~~g~~cr~~h~~~ 32 (344)
T KOG1039|consen 9 TICKYYQK-GNCKFGDLCRLSHSLP 32 (344)
T ss_pred hhhhhccc-ccccccceeeeeccCc
Confidence 79999999 9999999999999987
No 37
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.04 E-value=0.12 Score=52.89 Aligned_cols=28 Identities=43% Similarity=0.898 Sum_probs=24.8
Q ss_pred CcCcccccccCCCCCCCCCCCCCCCchh
Q 011776 52 VPDCVFYMRTGVCGYGDRCRYNHPRNRA 79 (477)
Q Consensus 52 ~~~C~yF~rtG~C~~G~~CkF~H~~~~~ 79 (477)
..+|+.|-.||.|.||+.|+|+|+....
T Consensus 186 pDicKdykeTgycg~gdSckFlh~r~Dy 213 (313)
T KOG1813|consen 186 PDICKDYKETGYCGYGDSCKFLHDRSDY 213 (313)
T ss_pred chhhhhhHhhCcccccchhhhhhhhhhc
Confidence 3579999999999999999999988753
No 38
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=88.76 E-value=0.15 Score=51.19 Aligned_cols=28 Identities=21% Similarity=0.440 Sum_probs=24.6
Q ss_pred CCCCCCCCccccccccCCCCCCCcCCCCC
Q 011776 342 LRPGAQPCTFYLQNGRCKFGATCKFDHPM 370 (477)
Q Consensus 342 ~rpg~~~C~~y~~~G~CkfG~~CkF~Hp~ 370 (477)
.++....|..|++ +.|.+|..|-|.|..
T Consensus 148 T~~rea~C~~~e~-~~C~rG~~CnFmH~k 175 (260)
T KOG2202|consen 148 TDFREAICGQFER-TECSRGGACNFMHVK 175 (260)
T ss_pred Cchhhhhhccccc-ccCCCCCcCcchhhh
Confidence 4556778999998 699999999999998
No 39
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=88.27 E-value=0.26 Score=32.23 Aligned_cols=22 Identities=36% Similarity=1.059 Sum_probs=19.0
Q ss_pred ccchhccccCCCCCCCCCCCCCC
Q 011776 98 PICQFYLKTGTCKFGASCKFHHP 120 (477)
Q Consensus 98 ~~Cr~FlktG~Ck~G~~CkF~H~ 120 (477)
++|.|.+..|.|. .+.|.|.|-
T Consensus 1 ~lC~yEl~Gg~Cn-d~~C~~QHf 22 (23)
T PF10650_consen 1 PLCPYELTGGVCN-DPDCEFQHF 22 (23)
T ss_pred CCCccccCCCeeC-CCCCCcccc
Confidence 4799999866998 789999995
No 40
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.69 E-value=0.18 Score=51.70 Aligned_cols=26 Identities=46% Similarity=0.999 Sum_probs=24.2
Q ss_pred ccchhccccCCCCCCCCCCCCCCCCC
Q 011776 98 PICQFYLKTGTCKFGASCKFHHPKHS 123 (477)
Q Consensus 98 ~~Cr~FlktG~Ck~G~~CkF~H~~~~ 123 (477)
.+|+.|-.||.|-||+.|+|+|+...
T Consensus 187 DicKdykeTgycg~gdSckFlh~r~D 212 (313)
T KOG1813|consen 187 DICKDYKETGYCGYGDSCKFLHDRSD 212 (313)
T ss_pred hhhhhhHhhCcccccchhhhhhhhhh
Confidence 48999999999999999999999874
No 41
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.57 E-value=0.26 Score=51.75 Aligned_cols=25 Identities=48% Similarity=1.129 Sum_probs=23.6
Q ss_pred ccccccccCCCCCCCCCCccCCCCCC
Q 011776 144 KECSYYLKTGQCKFGITCKFHHPQPA 169 (477)
Q Consensus 144 ~~C~~y~ktG~Ck~G~~CrF~H~~~~ 169 (477)
.+|+||++ |.|++|+.|+|.|..+.
T Consensus 9 tic~~~~~-g~c~~g~~cr~~h~~~~ 33 (344)
T KOG1039|consen 9 TICKYYQK-GNCKFGDLCRLSHSLPD 33 (344)
T ss_pred hhhhhccc-ccccccceeeeeccCch
Confidence 68999998 99999999999999995
No 42
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=84.19 E-value=0.65 Score=30.38 Aligned_cols=22 Identities=36% Similarity=0.757 Sum_probs=19.0
Q ss_pred ccccccccCCCCCCCCCCccCCC
Q 011776 144 KECSYYLKTGQCKFGITCKFHHP 166 (477)
Q Consensus 144 ~~C~~y~ktG~Ck~G~~CrF~H~ 166 (477)
++|.|-++.|.|.. +.|.|.|.
T Consensus 1 ~lC~yEl~Gg~Cnd-~~C~~QHf 22 (23)
T PF10650_consen 1 PLCPYELTGGVCND-PDCEFQHF 22 (23)
T ss_pred CCCccccCCCeeCC-CCCCcccc
Confidence 37999998669987 89999996
No 43
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=74.05 E-value=3.3 Score=43.63 Aligned_cols=34 Identities=29% Similarity=0.766 Sum_probs=28.7
Q ss_pred CCCCCCCCCCcCcccccccCCCCCCCCCCCCCCCc
Q 011776 43 NESYPQRHGVPDCVFYMRTGVCGYGDRCRYNHPRN 77 (477)
Q Consensus 43 ~~~yp~Rp~~~~C~yF~rtG~C~~G~~CkF~H~~~ 77 (477)
...|-.|....+|.||.+ |.|++|+.|.|+|...
T Consensus 152 t~p~ykrn~p~Icsf~v~-geckRG~ec~yrhEkp 185 (377)
T KOG0153|consen 152 TTPYYKRNRPHICSFFVK-GECKRGAECPYRHEKP 185 (377)
T ss_pred cCccccCCCCccccceee-ccccccccccccccCC
Confidence 455556666779999999 9999999999999876
No 44
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=73.56 E-value=2.6 Score=44.39 Aligned_cols=34 Identities=29% Similarity=0.816 Sum_probs=26.9
Q ss_pred ccCCCCCCCCccccccccCCCCCCCCCCCCCCCCC
Q 011776 291 EQSFPERPGEPECQYFLKTGDCKFGSSCRFHHPRD 325 (477)
Q Consensus 291 ~~~~Perp~~~~C~~y~ktG~C~~G~~Crf~Hp~~ 325 (477)
...|-.|..-..|.||++ |+|+.|+.|.|.|.+.
T Consensus 152 t~p~ykrn~p~Icsf~v~-geckRG~ec~yrhEkp 185 (377)
T KOG0153|consen 152 TTPYYKRNRPHICSFFVK-GECKRGAECPYRHEKP 185 (377)
T ss_pred cCccccCCCCccccceee-ccccccccccccccCC
Confidence 344445555688999998 7999999999999654
No 45
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=21.01 E-value=37 Score=37.39 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=29.5
Q ss_pred CCCCCCCCcCcccccccCCCCCCCCCCCCCCCchh
Q 011776 45 SYPQRHGVPDCVFYMRTGVCGYGDRCRYNHPRNRA 79 (477)
Q Consensus 45 ~yp~Rp~~~~C~yF~rtG~C~~G~~CkF~H~~~~~ 79 (477)
.+..|.....|++|.++|.|.+|+.|++.|....+
T Consensus 205 p~ks~~s~~r~k~fee~g~~~r~el~p~~hg~~~v 239 (526)
T KOG2135|consen 205 PEKSRNSENRRKFFEEFGVLERGELCPTHHGCVPV 239 (526)
T ss_pred cccccccHHhhhhhHhhceeeecccccccccccee
Confidence 45556667789999999999999999999987653
No 46
>KOG3777 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.56 E-value=54 Score=35.95 Aligned_cols=23 Identities=43% Similarity=1.041 Sum_probs=18.9
Q ss_pred CCCCccccccccCCCCCCCcCCCCCC
Q 011776 346 AQPCTFYLQNGRCKFGATCKFDHPMG 371 (477)
Q Consensus 346 ~~~C~~y~~~G~CkfG~~CkF~Hp~~ 371 (477)
..+|.|=.+ |.||.+|+|.|+.-
T Consensus 171 ~q~Cpygkk---ctyg~kck~~h~~~ 193 (443)
T KOG3777|consen 171 KQPCPYGKK---CTYGGKCKFYHPEI 193 (443)
T ss_pred ccCCCcccc---cCCCCceeeccccc
Confidence 356988765 99999999999974
No 47
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=20.26 E-value=45 Score=36.78 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=25.7
Q ss_pred CCCCccchhccccCCCCCCCCCCCCCCCC
Q 011776 94 RPGEPICQFYLKTGTCKFGASCKFHHPKH 122 (477)
Q Consensus 94 r~k~~~Cr~FlktG~Ck~G~~CkF~H~~~ 122 (477)
+.....|++|.++|.|.+|+.|++.|...
T Consensus 209 ~~s~~r~k~fee~g~~~r~el~p~~hg~~ 237 (526)
T KOG2135|consen 209 RNSENRRKFFEEFGVLERGELCPTHHGCV 237 (526)
T ss_pred cccHHhhhhhHhhceeeeccccccccccc
Confidence 45567899999999999999999999876
Done!