Query 011776
Match_columns 477
No_of_seqs 393 out of 1760
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 15:05:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011776.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011776hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d9n_A Cleavage and polyadenyl 99.4 6.6E-14 2.3E-18 114.1 5.2 67 50-151 8-74 (77)
2 2cqe_A KIAA1064 protein; CCCH 99.4 3E-14 1E-18 121.4 1.7 90 43-154 4-95 (98)
3 1m9o_A Tristetraproline; Cys3H 99.4 1.7E-13 5.8E-18 110.6 4.1 68 48-122 8-75 (77)
4 1m9o_A Tristetraproline; Cys3H 99.3 6.3E-13 2.2E-17 107.3 3.6 67 297-371 9-75 (77)
5 2cqe_A KIAA1064 protein; CCCH 99.2 4.6E-12 1.6E-16 107.9 5.5 52 94-168 10-61 (98)
6 2rhk_C Cleavage and polyadenyl 99.2 2.9E-12 9.8E-17 103.4 2.9 58 48-123 12-69 (72)
7 2d9n_A Cleavage and polyadenyl 99.2 1.1E-11 3.7E-16 101.0 5.2 57 95-170 8-64 (77)
8 2rhk_C Cleavage and polyadenyl 99.2 7.7E-12 2.6E-16 100.9 3.1 57 94-169 13-69 (72)
9 3d2q_A Muscleblind-like protei 99.1 2.7E-11 9.3E-16 97.0 2.6 60 51-122 5-65 (70)
10 2e5s_A Otthump00000018578; ZF- 99.0 2.5E-11 8.5E-16 103.5 0.0 60 51-122 19-79 (98)
11 3d2q_A Muscleblind-like protei 98.9 3E-10 1E-14 90.9 3.4 59 97-168 6-65 (70)
12 3d2n_A Muscleblind-like protei 98.9 2.8E-10 9.4E-15 94.3 2.9 58 51-122 8-66 (83)
13 2e5s_A Otthump00000018578; ZF- 98.9 3.4E-10 1.2E-14 96.4 2.1 60 96-168 19-79 (98)
14 2rpp_A Muscleblind-like protei 98.8 7.5E-10 2.6E-14 92.9 2.4 57 52-122 17-74 (89)
15 3d2n_A Muscleblind-like protei 98.7 4.6E-09 1.6E-13 87.0 3.7 58 96-168 8-66 (83)
16 2rpp_A Muscleblind-like protei 98.7 7.9E-09 2.7E-13 86.7 4.7 57 97-168 17-74 (89)
17 3u9g_A Zinc finger CCCH-type a 98.7 2E-08 7E-13 96.7 6.1 85 51-169 88-199 (229)
18 2lhn_A Nuclear polyadenylated 97.5 2E-07 6.7E-12 76.7 0.0 67 51-169 8-74 (80)
19 3u9g_A Zinc finger CCCH-type a 97.4 7.2E-05 2.5E-09 72.1 3.8 44 53-123 152-199 (229)
20 2lhn_A Nuclear polyadenylated 96.1 8.3E-05 2.8E-09 61.1 0.0 42 97-166 9-50 (80)
21 2d9m_A Zinc finger CCCH-type d 96.8 0.00027 9.1E-09 56.5 0.5 28 53-81 21-48 (69)
22 2d9m_A Zinc finger CCCH-type d 96.5 0.00096 3.3E-08 53.3 1.9 27 96-123 19-45 (69)
23 2fc6_A Nuclear, target of EGR1 95.7 0.0063 2.2E-07 45.5 3.0 28 95-122 18-45 (50)
24 2fc6_A Nuclear, target of EGR1 95.6 0.0045 1.5E-07 46.3 1.7 30 345-374 19-48 (50)
25 3u1l_A PRE-mRNA-splicing facto 92.2 0.046 1.6E-06 53.0 1.7 26 97-123 70-95 (240)
26 3u1l_A PRE-mRNA-splicing facto 92.0 0.041 1.4E-06 53.4 1.1 25 144-169 71-95 (240)
27 3v33_A Ribonuclease ZC3H12A; r 77.6 0.46 1.6E-05 45.8 0.0 23 346-371 192-214 (223)
28 3v33_A Ribonuclease ZC3H12A; r 61.2 1.7 5.9E-05 41.8 0.0 24 51-77 191-214 (223)
29 2kqb_A Aprataxin and PNK-like 50.6 10 0.00036 31.5 3.0 22 355-376 56-77 (89)
30 2kuo_A Aprataxin and PNK-like 40.3 11 0.00039 31.3 1.7 13 356-368 62-74 (91)
No 1
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=6.6e-14 Score=114.13 Aligned_cols=67 Identities=30% Similarity=0.689 Sum_probs=56.5
Q ss_pred CCCcCcccccccCCCCCCCCCCCCCCCchhhhHHHhhcCCCCCCCCCCccchhccccCCCCCCCCCCCCCCCCCCCCCcc
Q 011776 50 HGVPDCVFYMRTGVCGYGDRCRYNHPRNRAAVEAAVRATGDYPDRPGEPICQFYLKTGTCKFGASCKFHHPKHSGGSMSH 129 (477)
Q Consensus 50 p~~~~C~yF~rtG~C~~G~~CkF~H~~~~~~~~~~~r~~~~~Per~k~~~Cr~FlktG~Ck~G~~CkF~H~~~~~~~~~~ 129 (477)
.+.++|+||++ |.|++|++|+|+|+.... ++++|+||+++|.|. |++|+|.|.....
T Consensus 8 ~k~~~C~~fl~-G~C~~G~~C~fsH~~~~~----------------~~~~C~~f~~~G~C~-~~~C~f~H~~~~~----- 64 (77)
T 2d9n_A 8 EKTVVCKHWLR-GLCKKGDQCEFLHEYDMT----------------KMPECYFYSKFGECS-NKECPFLHIDPES----- 64 (77)
T ss_dssp CTTSBCHHHHT-TCCSCTTSSSSBCSCCTT----------------TSCBCHHHHHTCCCC-CSSCSSBCCCTTS-----
T ss_pred CcceeCHhHcc-CcCCCCCCCCCccccccC----------------cCCCCcccCCCCccC-CCCeeccCCCccc-----
Confidence 35789999999 999999999999987641 356899999889999 9999999987632
Q ss_pred cCCcccCCCCCCCCcccccccc
Q 011776 130 VPLNIYGYPLRPGEKECSYYLK 151 (477)
Q Consensus 130 ~~ln~~g~P~R~~~~~C~~y~k 151 (477)
..++|.+|++
T Consensus 65 ------------~~~~C~~f~~ 74 (77)
T 2d9n_A 65 ------------KIKDCPWSGP 74 (77)
T ss_dssp ------------SCSSSSCCTT
T ss_pred ------------cCCCCccccc
Confidence 2468999987
No 2
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.41 E-value=3e-14 Score=121.42 Aligned_cols=90 Identities=27% Similarity=0.451 Sum_probs=70.1
Q ss_pred CCCCCCCCCCcCcccccccCCCCCCCCCCCCCCCchhhhHHHhhcCCCCCCCCCCccchhccccCCCCCCCCCCCCCCCC
Q 011776 43 NESYPQRHGVPDCVFYMRTGVCGYGDRCRYNHPRNRAAVEAAVRATGDYPDRPGEPICQFYLKTGTCKFGASCKFHHPKH 122 (477)
Q Consensus 43 ~~~yp~Rp~~~~C~yF~rtG~C~~G~~CkF~H~~~~~~~~~~~r~~~~~Per~k~~~Cr~FlktG~Ck~G~~CkF~H~~~ 122 (477)
+..+..+.++.+|+||++ |.|++|++|+|+|+ ..+|++|+.+|.|++|++|+|+|+..
T Consensus 4 sH~~~~~~k~~lC~~f~~-G~C~~G~~C~f~H~---------------------~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 4 GSSGELPKKRELCKFYIT-GFCARAENCPYMHG---------------------DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp CCCCCCSCCCSBCTTTTT-TCCSCSTTCSSBSS---------------------SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred cccCCCCCCCccCccccc-CcCCCCCCCCCCCC---------------------CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 455667678999999975 99999999999997 24799997669999999999999865
Q ss_pred CCCC--CcccCCcccCCCCCCCCccccccccCCC
Q 011776 123 SGGS--MSHVPLNIYGYPLRPGEKECSYYLKTGQ 154 (477)
Q Consensus 123 ~~~~--~~~~~ln~~g~P~R~~~~~C~~y~ktG~ 154 (477)
.... .....++..+++.|.++++|.++.++|.
T Consensus 62 ~~~~~~~l~~~l~~~~~~~~~~e~e~~~~~k~~~ 95 (98)
T 2cqe_A 62 TEETRELLDKMLADDAEAGAEDEKEVEELKKSGP 95 (98)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCCCCCCCCSCCCCC
T ss_pred cccchhHHhhhcchhhhhccCCcHHHHHHHHcCC
Confidence 3210 0111234456778889999999999775
No 3
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.38 E-value=1.7e-13 Score=110.63 Aligned_cols=68 Identities=24% Similarity=0.593 Sum_probs=28.8
Q ss_pred CCCCCcCcccccccCCCCCCCCCCCCCCCchhhhHHHhhcCCCCCCCCCCccchhccccCCCCCCCCCCCCCCCC
Q 011776 48 QRHGVPDCVFYMRTGVCGYGDRCRYNHPRNRAAVEAAVRATGDYPDRPGEPICQFYLKTGTCKFGASCKFHHPKH 122 (477)
Q Consensus 48 ~Rp~~~~C~yF~rtG~C~~G~~CkF~H~~~~~~~~~~~r~~~~~Per~k~~~Cr~FlktG~Ck~G~~CkF~H~~~ 122 (477)
.+.++.+|++|+++|.|++|++|+|+|+..+.... . ...+.++.+|++|..+|.|++|++|+|+|...
T Consensus 8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~------~-~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA------N-RHPKYKTELCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGT------C---------------------------------
T ss_pred CCccchhCHHhhhCCCcCCCCCccCCCCChhhccc------c-ccccccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence 34577899999888999999999999998775321 0 11234678999888779999999999999865
No 4
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.31 E-value=6.3e-13 Score=107.28 Aligned_cols=67 Identities=24% Similarity=0.626 Sum_probs=28.4
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCcCCCCCC
Q 011776 297 RPGEPECQYFLKTGDCKFGSSCRFHHPRDRVVPRTNCALSPLGLPLRPGAQPCTFYLQNGRCKFGATCKFDHPMG 371 (477)
Q Consensus 297 rp~~~~C~~y~ktG~C~~G~~Crf~Hp~~~~~~~~~~~l~~~glP~rpg~~~C~~y~~~G~CkfG~~CkF~Hp~~ 371 (477)
..++.+|++|+++|.|++|++|+|+|+.+.+..... ..+....+|.+|.++|.|+||.+|+|.|+..
T Consensus 9 ~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~--------~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 9 RYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANR--------HPKYKTELCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp CCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC----------------------------------------
T ss_pred CccchhCHHhhhCCCcCCCCCccCCCCChhhccccc--------cccccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence 346789999998999999999999998876543210 1122356899998899999999999999864
No 5
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.25 E-value=4.6e-12 Score=107.91 Aligned_cols=52 Identities=31% Similarity=0.747 Sum_probs=46.0
Q ss_pred CCCCccchhccccCCCCCCCCCCCCCCCCCCCCCcccCCcccCCCCCCCCccccccccCCCCCCCCCCccCCCCC
Q 011776 94 RPGEPICQFYLKTGTCKFGASCKFHHPKHSGGSMSHVPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQP 168 (477)
Q Consensus 94 r~k~~~Cr~FlktG~Ck~G~~CkF~H~~~~~~~~~~~~ln~~g~P~R~~~~~C~~y~ktG~Ck~G~~CrF~H~~~ 168 (477)
+.++.+|+||++ |.|++|++|+|+|+. .+|++|+++|.|++|++|+|.|...
T Consensus 10 ~~k~~lC~~f~~-G~C~~G~~C~f~H~~----------------------~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 10 PKKRELCKFYIT-GFCARAENCPYMHGD----------------------FPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp SCCCSBCTTTTT-TCCSCSTTCSSBSSS----------------------SBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred CCCCccCccccc-CcCCCCCCCCCCCCC----------------------CcCcCcccCCcCCCCCCCcccCCCC
Confidence 457889999986 999999999999981 3799997679999999999999864
No 6
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.23 E-value=2.9e-12 Score=103.42 Aligned_cols=58 Identities=29% Similarity=0.660 Sum_probs=49.7
Q ss_pred CCCCCcCcccccccCCCCCCCCCCCCCCCchhhhHHHhhcCCCCCCCCCCccchhccccCCCCCCCCCCCCCCCCC
Q 011776 48 QRHGVPDCVFYMRTGVCGYGDRCRYNHPRNRAAVEAAVRATGDYPDRPGEPICQFYLKTGTCKFGASCKFHHPKHS 123 (477)
Q Consensus 48 ~Rp~~~~C~yF~rtG~C~~G~~CkF~H~~~~~~~~~~~r~~~~~Per~k~~~Cr~FlktG~Ck~G~~CkF~H~~~~ 123 (477)
...+.++|+||++ |.|++|++|+|+|+.+. .++++|+||++.|.|.+ ++|+|.|....
T Consensus 12 ~~~k~~vCk~fl~-G~C~~G~~C~fsH~~~~----------------~~~~~C~~f~~~G~C~~-~~C~y~H~~p~ 69 (72)
T 2rhk_C 12 SGEKTVVCKHWLR-GLCKKGDQCEFLHEYDM----------------TKMSECYFYSKFGECSN-KECPFLHIDPE 69 (72)
T ss_dssp SCCCCSBCHHHHT-TCCCCGGGSSSBCSCCT----------------TSCCBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred CCCcCeeCHHHhc-CCCCCCCCCCCcccccc----------------ccCCcccccCCCCCCCC-CCeeccCCCcc
Confidence 3446789999999 99999999999998753 24579999998899998 99999998763
No 7
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.1e-11 Score=100.96 Aligned_cols=57 Identities=33% Similarity=0.779 Sum_probs=49.1
Q ss_pred CCCccchhccccCCCCCCCCCCCCCCCCCCCCCcccCCcccCCCCCCCCccccccccCCCCCCCCCCccCCCCCCC
Q 011776 95 PGEPICQFYLKTGTCKFGASCKFHHPKHSGGSMSHVPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQPAG 170 (477)
Q Consensus 95 ~k~~~Cr~FlktG~Ck~G~~CkF~H~~~~~~~~~~~~ln~~g~P~R~~~~~C~~y~ktG~Ck~G~~CrF~H~~~~~ 170 (477)
.++.+|+||++ |.|++|++|+|+|+.... ..++|++|+++|.|. |++|+|.|..+..
T Consensus 8 ~k~~~C~~fl~-G~C~~G~~C~fsH~~~~~-----------------~~~~C~~f~~~G~C~-~~~C~f~H~~~~~ 64 (77)
T 2d9n_A 8 EKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-----------------KMPECYFYSKFGECS-NKECPFLHIDPES 64 (77)
T ss_dssp CTTSBCHHHHT-TCCSCTTSSSSBCSCCTT-----------------TSCBCHHHHHTCCCC-CSSCSSBCCCTTS
T ss_pred CcceeCHhHcc-CcCCCCCCCCCccccccC-----------------cCCCCcccCCCCccC-CCCeeccCCCccc
Confidence 46789999999 999999999999987631 135899999989999 8999999998753
No 8
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.18 E-value=7.7e-12 Score=100.90 Aligned_cols=57 Identities=33% Similarity=0.755 Sum_probs=49.1
Q ss_pred CCCCccchhccccCCCCCCCCCCCCCCCCCCCCCcccCCcccCCCCCCCCccccccccCCCCCCCCCCccCCCCCC
Q 011776 94 RPGEPICQFYLKTGTCKFGASCKFHHPKHSGGSMSHVPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQPA 169 (477)
Q Consensus 94 r~k~~~Cr~FlktG~Ck~G~~CkF~H~~~~~~~~~~~~ln~~g~P~R~~~~~C~~y~ktG~Ck~G~~CrF~H~~~~ 169 (477)
..++.+|+||++ |.|++|++|+|+|+.... ..++|+||++.|.|.+ ++|+|.|..+.
T Consensus 13 ~~k~~vCk~fl~-G~C~~G~~C~fsH~~~~~-----------------~~~~C~~f~~~G~C~~-~~C~y~H~~p~ 69 (72)
T 2rhk_C 13 GEKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-----------------KMSECYFYSKFGECSN-KECPFLHIDPE 69 (72)
T ss_dssp CCCCSBCHHHHT-TCCCCGGGSSSBCSCCTT-----------------SCCBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred CCcCeeCHHHhc-CCCCCCCCCCCccccccc-----------------cCCcccccCCCCCCCC-CCeeccCCCcc
Confidence 346789999999 999999999999987531 2458999998899999 99999999875
No 9
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=99.09 E-value=2.7e-11 Score=96.96 Aligned_cols=60 Identities=32% Similarity=0.785 Sum_probs=48.0
Q ss_pred CCcCcccccccCCCCCCC-CCCCCCCCchhhhHHHhhcCCCCCCCCCCccchhccccCCCCCCCCCCCCCCCC
Q 011776 51 GVPDCVFYMRTGVCGYGD-RCRYNHPRNRAAVEAAVRATGDYPDRPGEPICQFYLKTGTCKFGASCKFHHPKH 122 (477)
Q Consensus 51 ~~~~C~yF~rtG~C~~G~-~CkF~H~~~~~~~~~~~r~~~~~Per~k~~~Cr~FlktG~Ck~G~~CkF~H~~~ 122 (477)
..++|++|++ |.|.+|+ .|+|+|+.+...+ -+...++++|++|++ |.|.++ +|+|.|+..
T Consensus 5 k~~vC~~f~~-G~C~rg~~~C~f~H~~~~~~~---------~~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~ 65 (70)
T 3d2q_A 5 RLEVCREYQR-GNCNRGENDCRFAHPADSTMI---------DTNDNTVTVCMDYIK-GRCSRE-KCKYFHPPA 65 (70)
T ss_dssp EEEBCHHHHT-TCCSSCTTTCSSBCCCTTSCC---------BTTTTEEEBCHHHHT-TCCCCT-TCCSBCCCH
T ss_pred cchhCHHHhc-CCCCCCCCCCCCccCcccccc---------cccCCcceeccccCc-CCCCCC-CcCeeCCHH
Confidence 3568999988 9999999 5999998864211 012345689999999 999988 999999864
No 10
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=2.5e-11 Score=103.49 Aligned_cols=60 Identities=30% Similarity=0.752 Sum_probs=49.2
Q ss_pred CCcCcccccccCCCCCCC-CCCCCCCCchhhhHHHhhcCCCCCCCCCCccchhccccCCCCCCCCCCCCCCCC
Q 011776 51 GVPDCVFYMRTGVCGYGD-RCRYNHPRNRAAVEAAVRATGDYPDRPGEPICQFYLKTGTCKFGASCKFHHPKH 122 (477)
Q Consensus 51 ~~~~C~yF~rtG~C~~G~-~CkF~H~~~~~~~~~~~r~~~~~Per~k~~~Cr~FlktG~Ck~G~~CkF~H~~~ 122 (477)
+.++|++|++ |.|.+|+ .|+|+|+.+...+ -+...+.++|++|++ |.|.++ +|+|.|+..
T Consensus 19 k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~---------~~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~ 79 (98)
T 2e5s_A 19 KLEVCREFQR-GNCARGETDCRFAHPADSTMI---------DTSDNTVTVCMDYIK-GRCMRE-KCKYFHPPA 79 (98)
T ss_dssp EEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSC---------CTTTCEEEBCHHHHH-TCCCCT-TCCSBCCCH
T ss_pred hhhhhHHHhc-CcCCCCCCCCCCcCCchhccc---------cccCCccccchhhcc-CCCCCC-CcCccCChH
Confidence 4678999999 9999999 8999999875321 112345689999999 999988 999999875
No 11
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.95 E-value=3e-10 Score=90.87 Aligned_cols=59 Identities=32% Similarity=0.743 Sum_probs=46.2
Q ss_pred CccchhccccCCCCCCC-CCCCCCCCCCCCCCcccCCcccCCCCCCCCccccccccCCCCCCCCCCccCCCCC
Q 011776 97 EPICQFYLKTGTCKFGA-SCKFHHPKHSGGSMSHVPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQP 168 (477)
Q Consensus 97 ~~~Cr~FlktG~Ck~G~-~CkF~H~~~~~~~~~~~~ln~~g~P~R~~~~~C~~y~ktG~Ck~G~~CrF~H~~~ 168 (477)
..+|++|++ |.|++|+ .|+|+|+...... . .......+|.+|++ |.|.+| +|+|.|+.+
T Consensus 6 ~~vC~~f~~-G~C~rg~~~C~f~H~~~~~~~----~------~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~ 65 (70)
T 3d2q_A 6 LEVCREYQR-GNCNRGENDCRFAHPADSTMI----D------TNDNTVTVCMDYIK-GRCSRE-KCKYFHPPA 65 (70)
T ss_dssp EEBCHHHHT-TCCSSCTTTCSSBCCCTTSCC----B------TTTTEEEBCHHHHT-TCCCCT-TCCSBCCCH
T ss_pred chhCHHHhc-CCCCCCCCCCCCccCcccccc----c------ccCCcceeccccCc-CCCCCC-CcCeeCCHH
Confidence 468999998 9999999 5999998764211 0 01123578999998 999998 999999864
No 12
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.94 E-value=2.8e-10 Score=94.33 Aligned_cols=58 Identities=31% Similarity=0.679 Sum_probs=47.3
Q ss_pred CCcCcccccccCCCCCCC-CCCCCCCCchhhhHHHhhcCCCCCCCCCCccchhccccCCCCCCCCCCCCCCCC
Q 011776 51 GVPDCVFYMRTGVCGYGD-RCRYNHPRNRAAVEAAVRATGDYPDRPGEPICQFYLKTGTCKFGASCKFHHPKH 122 (477)
Q Consensus 51 ~~~~C~yF~rtG~C~~G~-~CkF~H~~~~~~~~~~~r~~~~~Per~k~~~Cr~FlktG~Ck~G~~CkF~H~~~ 122 (477)
..++|++|++ |.|.+|+ .|+|+|+.....+ +....++|.+|++ |.|.++ +|+|.|+..
T Consensus 8 ~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~-----------~~~~~~vC~dflk-G~C~r~-~C~y~H~~~ 66 (83)
T 3d2n_A 8 TLEVCREFQR-GTCSRPDTECKFAHPSKSCQV-----------ENGRVIACFDSLK-GRCSRE-NCKYLHPPP 66 (83)
T ss_dssp EEEBCTTGGG-TCCCSCTTTCSSBCCCTTCCE-----------ETTEEECCHHHHT-TCCCCS-SCSSCCCCH
T ss_pred cchhcHHHhc-CCCCCCCCCCCCcCCCccccc-----------cCCceeehhHhhh-ccccCC-CcceeCChH
Confidence 4578999999 9999997 9999999864211 1224579999999 999987 999999875
No 13
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=3.4e-10 Score=96.45 Aligned_cols=60 Identities=30% Similarity=0.687 Sum_probs=47.5
Q ss_pred CCccchhccccCCCCCCC-CCCCCCCCCCCCCCcccCCcccCCCCCCCCccccccccCCCCCCCCCCccCCCCC
Q 011776 96 GEPICQFYLKTGTCKFGA-SCKFHHPKHSGGSMSHVPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQP 168 (477)
Q Consensus 96 k~~~Cr~FlktG~Ck~G~-~CkF~H~~~~~~~~~~~~ln~~g~P~R~~~~~C~~y~ktG~Ck~G~~CrF~H~~~ 168 (477)
+..+|++|++ |.|++|+ +|+|+|+....... .......+|.+|++ |.|.++ +|+|.|+.+
T Consensus 19 k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~~----------~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~ 79 (98)
T 2e5s_A 19 KLEVCREFQR-GNCARGETDCRFAHPADSTMID----------TSDNTVTVCMDYIK-GRCMRE-KCKYFHPPA 79 (98)
T ss_dssp EEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSCC----------TTTCEEEBCHHHHH-TCCCCT-TCCSBCCCH
T ss_pred hhhhhHHHhc-CcCCCCCCCCCCcCCchhcccc----------ccCCccccchhhcc-CCCCCC-CcCccCChH
Confidence 3469999999 9999999 89999998643210 01123578999999 999998 999999876
No 14
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.85 E-value=7.5e-10 Score=92.87 Aligned_cols=57 Identities=32% Similarity=0.717 Sum_probs=47.3
Q ss_pred CcCcccccccCCCCCCC-CCCCCCCCchhhhHHHhhcCCCCCCCCCCccchhccccCCCCCCCCCCCCCCCC
Q 011776 52 VPDCVFYMRTGVCGYGD-RCRYNHPRNRAAVEAAVRATGDYPDRPGEPICQFYLKTGTCKFGASCKFHHPKH 122 (477)
Q Consensus 52 ~~~C~yF~rtG~C~~G~-~CkF~H~~~~~~~~~~~r~~~~~Per~k~~~Cr~FlktG~Ck~G~~CkF~H~~~ 122 (477)
.++|++|++ |.|.+|+ .|+|+|+.....+ +....++|.+|++ |.|.++ +|+|.|+..
T Consensus 17 ~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v-----------~~~~~~vC~dflk-G~C~r~-~Cky~H~~~ 74 (89)
T 2rpp_A 17 LEVCRQFQR-GTCSRSDEECKFAHPPKSCQV-----------ENGRVIACFDSLK-GRCSRE-NCKYLHPPT 74 (89)
T ss_dssp ECBCHHHHH-TCCCCCTTTSSSBCCCSSSCC-----------BTTBEEBCHHHHH-TCCCCT-TCCSBCCCH
T ss_pred hhhchHHhc-CCCCCCCCCCCCcCCCccccc-----------cCCceeeehhhhh-CcCCCC-CcceecCHH
Confidence 568999999 9999998 9999999875321 1224689999999 999976 999999875
No 15
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.74 E-value=4.6e-09 Score=86.99 Aligned_cols=58 Identities=36% Similarity=0.730 Sum_probs=46.2
Q ss_pred CCccchhccccCCCCCCC-CCCCCCCCCCCCCCcccCCcccCCCCCCCCccccccccCCCCCCCCCCccCCCCC
Q 011776 96 GEPICQFYLKTGTCKFGA-SCKFHHPKHSGGSMSHVPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQP 168 (477)
Q Consensus 96 k~~~Cr~FlktG~Ck~G~-~CkF~H~~~~~~~~~~~~ln~~g~P~R~~~~~C~~y~ktG~Ck~G~~CrF~H~~~ 168 (477)
+..+|++|++ |.|++|+ +|+|+|+..... +. .....+|.+|++ |.|.++ .|+|.|+..
T Consensus 8 ~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~----~~--------~~~~~vC~dflk-G~C~r~-~C~y~H~~~ 66 (83)
T 3d2n_A 8 TLEVCREFQR-GTCSRPDTECKFAHPSKSCQ----VE--------NGRVIACFDSLK-GRCSRE-NCKYLHPPP 66 (83)
T ss_dssp EEEBCTTGGG-TCCCSCTTTCSSBCCCTTCC----EE--------TTEEECCHHHHT-TCCCCS-SCSSCCCCH
T ss_pred cchhcHHHhc-CCCCCCCCCCCCcCCCcccc----cc--------CCceeehhHhhh-ccccCC-CcceeCChH
Confidence 3479999999 9999997 999999986321 00 012468999998 999997 999999876
No 16
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.72 E-value=7.9e-09 Score=86.68 Aligned_cols=57 Identities=33% Similarity=0.695 Sum_probs=45.9
Q ss_pred CccchhccccCCCCCCC-CCCCCCCCCCCCCCcccCCcccCCCCCCCCccccccccCCCCCCCCCCccCCCCC
Q 011776 97 EPICQFYLKTGTCKFGA-SCKFHHPKHSGGSMSHVPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQP 168 (477)
Q Consensus 97 ~~~Cr~FlktG~Ck~G~-~CkF~H~~~~~~~~~~~~ln~~g~P~R~~~~~C~~y~ktG~Ck~G~~CrF~H~~~ 168 (477)
..+|++|++ |.|++++ .|+|+|+...... + .....+|.+|++ |.|.++ .|+|.|+..
T Consensus 17 ~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v----~--------~~~~~vC~dflk-G~C~r~-~Cky~H~~~ 74 (89)
T 2rpp_A 17 LEVCRQFQR-GTCSRSDEECKFAHPPKSCQV----E--------NGRVIACFDSLK-GRCSRE-NCKYLHPPT 74 (89)
T ss_dssp ECBCHHHHH-TCCCCCTTTSSSBCCCSSSCC----B--------TTBEEBCHHHHH-TCCCCT-TCCSBCCCH
T ss_pred hhhchHHhc-CCCCCCCCCCCCcCCCccccc----c--------CCceeeehhhhh-CcCCCC-CcceecCHH
Confidence 468999999 9999998 9999999864211 1 012468999998 999996 999999875
No 17
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=98.66 E-value=2e-08 Score=96.68 Aligned_cols=85 Identities=24% Similarity=0.539 Sum_probs=66.0
Q ss_pred CCcCcccccccCCCC----CCCCCCCCCCCchhhhHHHhhc-----------------CC--CCCCCCCCccchhcccc-
Q 011776 51 GVPDCVFYMRTGVCG----YGDRCRYNHPRNRAAVEAAVRA-----------------TG--DYPDRPGEPICQFYLKT- 106 (477)
Q Consensus 51 ~~~~C~yF~rtG~C~----~G~~CkF~H~~~~~~~~~~~r~-----------------~~--~~Per~k~~~Cr~Flkt- 106 (477)
.--+|++|+- |.|+ .+..|+|.|++....+....+. ++ -+| .+|.+| +.
T Consensus 88 ~LHLCK~~l~-G~C~~~~~~~~~Ck~SHdi~s~~N~~vLk~h~l~~L~~~eL~~LLLQnDp~lLP-----eiC~~Y-kG~ 160 (229)
T 3u9g_A 88 SLHLCKLNLL-GRCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPFFLP-----EICKSY-KGE 160 (229)
T ss_dssp SBCCCHHHHT-TCCGGGTCCSSCCSSCSCTTCHHHHHHHHHTTCTTCCHHHHHHHHHTTCGGGSC-----CBCTTC-CCS
T ss_pred ceeechhhhc-CcCCcccCCCCCcccccccCchhHHHHHHHcCcccCCHhHhhheeccCCCccCc-----hHHHHh-CCC
Confidence 3567999998 9993 4588999999977544322221 11 133 689999 73
Q ss_pred ---CCCCCCCCCCCCCCCCCCCCCcccCCcccCCCCCCCCccccccccCCCCCCCCCCccCCCCCC
Q 011776 107 ---GTCKFGASCKFHHPKHSGGSMSHVPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQPA 169 (477)
Q Consensus 107 ---G~Ck~G~~CkF~H~~~~~~~~~~~~ln~~g~P~R~~~~~C~~y~ktG~Ck~G~~CrF~H~~~~ 169 (477)
|.|+++++|...| +|++|++ |.|+| .+|+..|....
T Consensus 161 g~~g~C~~~~~C~kLH-------------------------IC~~Fl~-G~C~f-~~CkRsH~~~~ 199 (229)
T 3u9g_A 161 GRKQTCGQPQPCERLH-------------------------ICEHFTR-GNCSY-LNCLRSHNLMD 199 (229)
T ss_dssp SSCCSCSSSSCCCSBC-------------------------SCHHHHT-TCCCC-SSCSSCCCTTS
T ss_pred CCCCcCCCCCCCccee-------------------------ccchhhc-CCcCC-CCccCccCccC
Confidence 6899999999999 6999998 99999 89999998753
No 18
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=97.50 E-value=2e-07 Score=76.74 Aligned_cols=67 Identities=33% Similarity=0.823 Sum_probs=54.0
Q ss_pred CCcCcccccccCCCCCCCCCCCCCCCchhhhHHHhhcCCCCCCCCCCccchhccccCCCCCCCCCCCCCCCCCCCCCccc
Q 011776 51 GVPDCVFYMRTGVCGYGDRCRYNHPRNRAAVEAAVRATGDYPDRPGEPICQFYLKTGTCKFGASCKFHHPKHSGGSMSHV 130 (477)
Q Consensus 51 ~~~~C~yF~rtG~C~~G~~CkF~H~~~~~~~~~~~r~~~~~Per~k~~~Cr~FlktG~Ck~G~~CkF~H~~~~~~~~~~~ 130 (477)
.++.|+||.. |++ ..|.|.|+... +.|+|+.. |++ .+|.|.|+..
T Consensus 8 ~~e~CKf~~~---Ctn-~~C~f~Hp~~~-------------------~~Cr~g~~---C~~-~~C~f~HP~~-------- 52 (80)
T 2lhn_A 8 SLEQCKFGTH---CTN-KRCKYRHARSH-------------------IMCREGAN---CTR-IDCLFGHPIN-------- 52 (80)
Confidence 3567999976 999 99999997532 47999975 996 8899999732
Q ss_pred CCcccCCCCCCCCccccccccCCCCCCCCCCccCCCCCC
Q 011776 131 PLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQPA 169 (477)
Q Consensus 131 ~ln~~g~P~R~~~~~C~~y~ktG~Ck~G~~CrF~H~~~~ 169 (477)
..|+|+. .|.+ ..|.|.|+.-.
T Consensus 53 -------------~~Crf~~---~C~n-~~C~F~Hp~g~ 74 (80)
T 2lhn_A 53 -------------EDCRFGV---NCKN-IYCLFRHPPGR 74 (80)
Confidence 3699975 4999 89999998653
No 19
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=97.42 E-value=7.2e-05 Score=72.14 Aligned_cols=44 Identities=27% Similarity=0.723 Sum_probs=39.8
Q ss_pred cCcccccc----cCCCCCCCCCCCCCCCchhhhHHHhhcCCCCCCCCCCccchhccccCCCCCCCCCCCCCCCCC
Q 011776 53 PDCVFYMR----TGVCGYGDRCRYNHPRNRAAVEAAVRATGDYPDRPGEPICQFYLKTGTCKFGASCKFHHPKHS 123 (477)
Q Consensus 53 ~~C~yF~r----tG~C~~G~~CkF~H~~~~~~~~~~~r~~~~~Per~k~~~Cr~FlktG~Ck~G~~CkF~H~~~~ 123 (477)
++|.+| + +|.|++++.|...| +|++|++ |.|+| .+||-+|+...
T Consensus 152 eiC~~Y-kG~g~~g~C~~~~~C~kLH------------------------IC~~Fl~-G~C~f-~~CkRsH~~~~ 199 (229)
T 3u9g_A 152 EICKSY-KGEGRKQTCGQPQPCERLH------------------------ICEHFTR-GNCSY-LNCLRSHNLMD 199 (229)
T ss_dssp CBCTTC-CCSSSCCSCSSSSCCCSBC------------------------SCHHHHT-TCCCC-SSCSSCCCTTS
T ss_pred hHHHHh-CCCCCCCcCCCCCCCccee------------------------ccchhhc-CCcCC-CCccCccCccC
Confidence 479999 7 47999999999999 8999998 99999 89999999853
No 20
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=96.14 E-value=8.3e-05 Score=61.10 Aligned_cols=42 Identities=31% Similarity=0.698 Sum_probs=34.4
Q ss_pred CccchhccccCCCCCCCCCCCCCCCCCCCCCcccCCcccCCCCCCCCccccccccCCCCCCCCCCccCCC
Q 011776 97 EPICQFYLKTGTCKFGASCKFHHPKHSGGSMSHVPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHP 166 (477)
Q Consensus 97 ~~~Cr~FlktG~Ck~G~~CkF~H~~~~~~~~~~~~ln~~g~P~R~~~~~C~~y~ktG~Ck~G~~CrF~H~ 166 (477)
.+.|+||.. |++ .+|.|.|+... ..|+|+. .|++ .+|.|.|+
T Consensus 9 ~e~CKf~~~---Ctn-~~C~f~Hp~~~--------------------~~Cr~g~---~C~~-~~C~f~HP 50 (80)
T 2lhn_A 9 LEQCKFGTH---CTN-KRCKYRHARSH--------------------IMCREGA---NCTR-IDCLFGHP 50 (80)
Confidence 468999986 997 99999997641 3699984 5999 88999996
No 21
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.76 E-value=0.00027 Score=56.53 Aligned_cols=28 Identities=29% Similarity=0.678 Sum_probs=24.7
Q ss_pred cCcccccccCCCCCCCCCCCCCCCchhhh
Q 011776 53 PDCVFYMRTGVCGYGDRCRYNHPRNRAAV 81 (477)
Q Consensus 53 ~~C~yF~rtG~C~~G~~CkF~H~~~~~~~ 81 (477)
.+|+.|+ +|.|.||++|.|+|..+++..
T Consensus 21 ~LC~~~~-~G~C~~G~~C~FAHG~~ELr~ 48 (69)
T 2d9m_A 21 SICDRYM-NGTCPEGNSCKFAHGNAELHE 48 (69)
T ss_dssp SBCHHHH-HSCCSSCSSCSSBSSHHHHHH
T ss_pred ccCcccC-cCCCCCCCccCCcCCHHHHhh
Confidence 7999995 599999999999999988653
No 22
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.47 E-value=0.00096 Score=53.31 Aligned_cols=27 Identities=44% Similarity=0.829 Sum_probs=23.3
Q ss_pred CCccchhccccCCCCCCCCCCCCCCCCC
Q 011776 96 GEPICQFYLKTGTCKFGASCKFHHPKHS 123 (477)
Q Consensus 96 k~~~Cr~FlktG~Ck~G~~CkF~H~~~~ 123 (477)
+..+|++|++ |.|+||++|.|+|...+
T Consensus 19 k~~LC~~~~~-G~C~~G~~C~FAHG~~E 45 (69)
T 2d9m_A 19 YFSICDRYMN-GTCPEGNSCKFAHGNAE 45 (69)
T ss_dssp CCSBCHHHHH-SCCSSCSSCSSBSSHHH
T ss_pred CcccCcccCc-CCCCCCCccCCcCCHHH
Confidence 3479999975 99999999999998764
No 23
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=95.71 E-value=0.0063 Score=45.50 Aligned_cols=28 Identities=25% Similarity=0.546 Sum_probs=25.6
Q ss_pred CCCccchhccccCCCCCCCCCCCCCCCC
Q 011776 95 PGEPICQFYLKTGTCKFGASCKFHHPKH 122 (477)
Q Consensus 95 ~k~~~Cr~FlktG~Ck~G~~CkF~H~~~ 122 (477)
..+.+|.-|...|+|++|.+|.+.|+.+
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCC
Confidence 3568999999999999999999999986
No 24
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=95.56 E-value=0.0045 Score=46.31 Aligned_cols=30 Identities=20% Similarity=0.513 Sum_probs=26.9
Q ss_pred CCCCCccccccccCCCCCCCcCCCCCCCCC
Q 011776 345 GAQPCTFYLQNGRCKFGATCKFDHPMGAMR 374 (477)
Q Consensus 345 g~~~C~~y~~~G~CkfG~~CkF~Hp~~~~~ 374 (477)
...+|.-|..+|.|+.|.+|.|.|-+|..+
T Consensus 19 ~~~iC~~FSayGwCp~G~~Cp~SHDiDl~~ 48 (50)
T 2fc6_A 19 PTSICDNFSAYGWCPLGPQCPQSHDISGPS 48 (50)
T ss_dssp CSCBCSHHHHTCCCTTGGGCSSBCCCCCCC
T ss_pred ccchhhhccccccCCCCCCCCccccCCCCC
Confidence 367899999999999999999999998654
No 25
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=92.18 E-value=0.046 Score=53.05 Aligned_cols=26 Identities=31% Similarity=0.772 Sum_probs=23.1
Q ss_pred CccchhccccCCCCCCCCCCCCCCCCC
Q 011776 97 EPICQFYLKTGTCKFGASCKFHHPKHS 123 (477)
Q Consensus 97 ~~~Cr~FlktG~Ck~G~~CkF~H~~~~ 123 (477)
..+|-||.+ |.|++|++|.|.|....
T Consensus 70 ~~~C~ffak-G~C~~G~~C~y~H~lPt 95 (240)
T 3u1l_A 70 LFFCLFFAK-GMCCLGPKCEYLHHIPD 95 (240)
T ss_dssp CSBCHHHHT-TCCSCGGGCSSBBSCCC
T ss_pred CeEcCcccc-CCCCCCCCCCccCCCCC
Confidence 358999999 99999999999998753
No 26
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=91.97 E-value=0.041 Score=53.44 Aligned_cols=25 Identities=32% Similarity=0.813 Sum_probs=23.2
Q ss_pred ccccccccCCCCCCCCCCccCCCCCC
Q 011776 144 KECSYYLKTGQCKFGITCKFHHPQPA 169 (477)
Q Consensus 144 ~~C~~y~ktG~Ck~G~~CrF~H~~~~ 169 (477)
.+|.||.+ |.|++|..|.|.|..|.
T Consensus 71 ~~C~ffak-G~C~~G~~C~y~H~lPt 95 (240)
T 3u1l_A 71 FFCLFFAK-GMCCLGPKCEYLHHIPD 95 (240)
T ss_dssp SBCHHHHT-TCCSCGGGCSSBBSCCC
T ss_pred eEcCcccc-CCCCCCCCCCccCCCCC
Confidence 58999998 99999999999998875
No 27
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=77.62 E-value=0.46 Score=45.77 Aligned_cols=23 Identities=39% Similarity=1.039 Sum_probs=0.0
Q ss_pred CCCCccccccccCCCCCCCcCCCCCC
Q 011776 346 AQPCTFYLQNGRCKFGATCKFDHPMG 371 (477)
Q Consensus 346 ~~~C~~y~~~G~CkfG~~CkF~Hp~~ 371 (477)
.++|+|=.+ |-||.+|||.||.-
T Consensus 192 ~~~~~~~~~---~~~~~~~~~~~~~~ 214 (223)
T 3v33_A 192 KQPCPYGRK---CTYGIKCRFFHPER 214 (223)
T ss_dssp --------------------------
T ss_pred CCCCCCCcc---cccCCcceecCCcc
Confidence 567998754 99999999999974
No 28
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=61.20 E-value=1.7 Score=41.78 Aligned_cols=24 Identities=33% Similarity=0.894 Sum_probs=0.0
Q ss_pred CCcCcccccccCCCCCCCCCCCCCCCc
Q 011776 51 GVPDCVFYMRTGVCGYGDRCRYNHPRN 77 (477)
Q Consensus 51 ~~~~C~yF~rtG~C~~G~~CkF~H~~~ 77 (477)
..+.|.|=.+ |.||.+|+|.|+..
T Consensus 191 ~~~~~~~~~~---~~~~~~~~~~~~~~ 214 (223)
T 3v33_A 191 RKQPCPYGRK---CTYGIKCRFFHPER 214 (223)
T ss_dssp ---------------------------
T ss_pred CCCCCCCCcc---cccCCcceecCCcc
Confidence 4678999855 99999999999764
No 29
>2kqb_A Aprataxin and PNK-like factor; ADP-ribosylation, DNA damage, DNA repair, metal-binding, nucleotide-binding, nucleus, zinc, zinc-finger, lyase; NMR {Homo sapiens} PDB: 2kqc_A 2kqd_A* 2kqe_A*
Probab=50.60 E-value=10 Score=31.46 Aligned_cols=22 Identities=23% Similarity=0.708 Sum_probs=0.0
Q ss_pred cccCCCCCCCcCCCCCCCCCCC
Q 011776 355 NGRCKFGATCKFDHPMGAMRYS 376 (477)
Q Consensus 355 ~G~CkfG~~CkF~Hp~~~~~~~ 376 (477)
.-.|+||.+|.=..|.-...|+
T Consensus 56 ~p~C~YG~~CYRkNp~H~~ey~ 77 (89)
T 2kqb_A 56 RPECPYGPSCYRKNPQHKIEYR 77 (89)
T ss_dssp ----------------------
T ss_pred CCCCCCchhhhcCCHHHHHhcc
Confidence 3579999999877776666665
No 30
>2kuo_A Aprataxin and PNK-like factor; aprataxin PNK-like factor (APLF), poly ADP-ribose (PAR), PAR zinc finger (PBZ), DNA damage, ADP-ribose; NMR {Homo sapiens}
Probab=40.28 E-value=11 Score=31.34 Aligned_cols=13 Identities=23% Similarity=0.797 Sum_probs=9.8
Q ss_pred ccCCCCCCCcCCC
Q 011776 356 GRCKFGATCKFDH 368 (477)
Q Consensus 356 G~CkfG~~CkF~H 368 (477)
-.|+||.+|.=..
T Consensus 62 p~C~YG~~CYRkN 74 (91)
T 2kuo_A 62 PECPYGPSCYRKN 74 (91)
T ss_dssp CBCTTGGGCCCCC
T ss_pred CCCCCchhhhcCC
Confidence 5799999996433
Done!