BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011777
(477 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a
Length = 431
Score = 198 bits (504), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 133/409 (32%), Positives = 207/409 (50%), Gaps = 12/409 (2%)
Query: 78 KPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLH 137
+P+ I K +++D +GR LD +G ++ GHCHP++++ I E + L H + L
Sbjct: 23 EPMIIERAKGSFVYDADGRAILDFTSGAMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLS 82
Query: 138 HAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHG--GS 195
+ D A LA+ P L +++G E+NE A+ MA+L TG ++ ++HG G+
Sbjct: 83 RPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGA 142
Query: 196 SGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAA-RYAQDLQ---DHIDFGTSGK 251
+ + +A P G + P Y F + A Y +L D ID +SG
Sbjct: 143 AASATYSAGRKGVGPAAVGSF-AIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGN 201
Query: 252 VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQG 311
+A FIAE I GG +EL GY+ + G + I DE QTG GRTG+ + + G
Sbjct: 202 LAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMF-ACQRDG 260
Query: 312 VIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQ--KIQFNTFGGNPVCSAGGLAVLRVID 369
V PDI+T++K +G GLPL A+VT+ I + + + T +P+ +A GL VL V+
Sbjct: 261 VTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQ 320
Query: 370 KERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVL 429
++ A +G L L L ER D IGDVRGRGL++G+E+V DR+ K PA A +
Sbjct: 321 RDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKI 380
Query: 430 FEKLREXXXXXXXXXX--XXXXFRIKPPMCFTKDDADFLVDALDYSMSK 476
+ FRI PP+ ++D+ D + L ++ +
Sbjct: 381 TRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIER 429
>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Aminocyclopentanephosphonate
pdb|1M0O|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Methylpropanephosphonate
pdb|1M0P|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Phenylethanephosphonate
pdb|1M0Q|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
S- 1-Aminoethanephosphonate
pdb|1ZC9|A Chain A, The Crystal Structure Of Dialkylglycine Decarboxylase
Complex With Pyridoxamine 5-phosphate
pdb|1ZOB|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylases Bound
With Calcium Ion
pdb|1ZOD|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylase Bound
With Cesium Ion
pdb|1DKA|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
pdb|2DKB|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
Length = 433
Score = 197 bits (502), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 133/409 (32%), Positives = 207/409 (50%), Gaps = 12/409 (2%)
Query: 78 KPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLH 137
+P+ I K +++D +GR LD +G ++ GHCHP++++ I E + L H + L
Sbjct: 25 EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLS 84
Query: 138 HAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHG--GS 195
+ D A LA+ P L +++G E+NE A+ MA+L TG ++ ++HG G+
Sbjct: 85 RPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGA 144
Query: 196 SGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAA-RYAQDLQ---DHIDFGTSGK 251
+ + +A P G + P Y F + A Y +L D ID +SG
Sbjct: 145 AASATYSAGRKGVGPAAVGSF-AIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGN 203
Query: 252 VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQG 311
+A FIAE I GG +EL GY+ + G + I DE QTG GRTG+ + + G
Sbjct: 204 LAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMF-ACQRDG 262
Query: 312 VIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQ--KIQFNTFGGNPVCSAGGLAVLRVID 369
V PDI+T++K +G GLPL A+VT+ I + + + T +P+ +A GL VL V+
Sbjct: 263 VTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQ 322
Query: 370 KERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVL 429
++ A +G L L L ER D IGDVRGRGL++G+E+V DR+ K PA A +
Sbjct: 323 RDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKI 382
Query: 430 FEKLREXXXXXXXXXX--XXXXFRIKPPMCFTKDDADFLVDALDYSMSK 476
+ FRI PP+ ++D+ D + L ++ +
Sbjct: 383 TRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIER 431
>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With 5pa
pdb|1D7S|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Dcs
pdb|1D7U|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Lcs
pdb|1D7V|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Nma
Length = 433
Score = 197 bits (501), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 133/409 (32%), Positives = 207/409 (50%), Gaps = 12/409 (2%)
Query: 78 KPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLH 137
+P+ I K +++D +GR LD +G ++ GHCHP++++ I E + L H + L
Sbjct: 25 EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSGMLS 84
Query: 138 HAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHG--GS 195
+ D A LA+ P L +++G E+NE A+ MA+L TG ++ ++HG G+
Sbjct: 85 RPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGA 144
Query: 196 SGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAA-RYAQDLQ---DHIDFGTSGK 251
+ + +A P G + P Y F + A Y +L D ID +SG
Sbjct: 145 AASATYSAGRKGVGPAAVGSF-AIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGN 203
Query: 252 VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQG 311
+A FIAE I GG +EL GY+ + G + I DE QTG GRTG+ + + G
Sbjct: 204 LAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMF-ACQRDG 262
Query: 312 VIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQ--KIQFNTFGGNPVCSAGGLAVLRVID 369
V PDI+T++K +G GLPL A+VT+ I + + + T +P+ +A GL VL V+
Sbjct: 263 VTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQ 322
Query: 370 KERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVL 429
++ A +G L L L ER D IGDVRGRGL++G+E+V DR+ K PA A +
Sbjct: 323 RDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKI 382
Query: 430 FEKLREXXXXXXXXXX--XXXXFRIKPPMCFTKDDADFLVDALDYSMSK 476
+ FRI PP+ ++D+ D + L ++ +
Sbjct: 383 TRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIER 431
>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
pdb|1DGE|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
Length = 432
Score = 197 bits (501), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 133/409 (32%), Positives = 207/409 (50%), Gaps = 12/409 (2%)
Query: 78 KPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLH 137
+P+ I K +++D +GR LD +G ++ GHCHP++++ I E + L H + L
Sbjct: 24 EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSGMLS 83
Query: 138 HAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHG--GS 195
+ D A LA+ P L +++G E+NE A+ MA+L TG ++ ++HG G+
Sbjct: 84 RPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGA 143
Query: 196 SGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAA-RYAQDLQ---DHIDFGTSGK 251
+ + +A P G + P Y F + A Y +L D ID +SG
Sbjct: 144 AASATYSAGRKGVGPAAVGSF-AIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGN 202
Query: 252 VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQG 311
+A FIAE I GG +EL GY+ + G + I DE QTG GRTG+ + + G
Sbjct: 203 LAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMF-ACQRDG 261
Query: 312 VIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQ--KIQFNTFGGNPVCSAGGLAVLRVID 369
V PDI+T++K +G GLPL A+VT+ I + + + T +P+ +A GL VL V+
Sbjct: 262 VTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQ 321
Query: 370 KERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVL 429
++ A +G L L L ER D IGDVRGRGL++G+E+V DR+ K PA A +
Sbjct: 322 RDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKI 381
Query: 430 FEKLREXXXXXXXXXX--XXXXFRIKPPMCFTKDDADFLVDALDYSMSK 476
+ FRI PP+ ++D+ D + L ++ +
Sbjct: 382 TRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIER 430
>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1VEF|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
Length = 395
Score = 186 bits (472), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 126/398 (31%), Positives = 192/398 (48%), Gaps = 33/398 (8%)
Query: 75 YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTI 134
Y + L IV G+ ++D G Y+D G + GH +P+V+ A+ Q++ L
Sbjct: 24 YNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQT 83
Query: 135 YLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGG 194
+F L + +P L V+ VNSGTEANE A+ AR TG +A + G
Sbjct: 84 LPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGR 143
Query: 195 SSGTIGLTALNTW--KYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKV 252
+ G++ +T W KY P + V PY+ + L+ +D T
Sbjct: 144 TMGSLSVT----WEPKYREPFLPLVEPVEFIPYND---------VEALKRAVDEET---- 186
Query: 253 AGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGV 312
A I E +QG GG P +L+ +I ++ G + I DE+QTG GRTG + FE G+
Sbjct: 187 AAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRF-AFEHFGI 245
Query: 313 IPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKER 372
+PDI+T+AK +G G+PLG V E+A M + TFGGNP+ A G+A +R +++ R
Sbjct: 246 VPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTR 305
Query: 373 RQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEK 432
A++G + +LR + I +VRG GLMVG+EL K + A +
Sbjct: 306 LWERAAELGPWFMEKLRAIPSPK--IREVRGMGLMVGLEL----------KEKAAPYIAR 353
Query: 433 LREXXXXXXXXXXXXXXFRIKPPMCFTKDDADFLVDAL 470
L E R PP+ K+D + +V+A+
Sbjct: 354 L-EKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAV 390
>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Thermotoga Maritima
Length = 385
Score = 178 bits (452), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 123/401 (30%), Positives = 193/401 (48%), Gaps = 34/401 (8%)
Query: 75 YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTI 134
Y + P V GK +++DE G YLD +GI GH HP ++ AI +Q++ L H + +
Sbjct: 7 YSRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNL 66
Query: 135 YLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALR-----N 189
+ + + AE L+ G V+F N+GTEANE A+ +AR R N
Sbjct: 67 FWNRPQMELAELLSKNTFGG--KVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHN 124
Query: 190 AYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTS 249
++HG + G+ LTA KY P +P F +DL+ + S
Sbjct: 125 SFHGRTLGS--LTATGQPKYQKPF---------EPLVPGFEYFEFNNVEDLRRKM----S 169
Query: 250 GKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFET 309
V E IQG G V +L+ + + + + DEVQ G GRTG + ++
Sbjct: 170 EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLF-AYQK 228
Query: 310 QGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID 369
GV+PD++T AKG+G G+P+GAV+ E ANV+ TFGGNP+ G+ V++ +
Sbjct: 229 YGVVPDVLTTAKGLGGGVPIGAVIVN-ERANVLEPGDHGTTFGGNPLACRAGVTVIKELT 287
Query: 370 KERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVL 429
KE + G++L+ +L+ ++E +D++ DVRG GLM+G++ R+E + + T
Sbjct: 288 KEGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQF---REEVSNREVATKCF 344
Query: 430 FEKLREXXXXXXXXXXXXXXFRIKPPMCFTKDDADFLVDAL 470
KL R PP+ + D V+ L
Sbjct: 345 ENKL-------LVVPAGNNTIRFLPPLTVEYGEIDLAVETL 378
>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
Length = 426
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 126/415 (30%), Positives = 194/415 (46%), Gaps = 12/415 (2%)
Query: 56 SADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHP 115
S ++ Q+R Q + + + P+ + ++D GR YLD GI ++ GH HP
Sbjct: 3 SNKELMQRRSQAIPRGVGQIH--PIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHP 60
Query: 116 DVLNAIFEQSKLLQHAT-TIYLHHAIADFAEALASKMPGNL-KVVYFVNSGTEANELAML 173
V+ A+ Q K L H + + + E + K+PG+ K V +G+EA E A+
Sbjct: 61 KVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVK 120
Query: 174 MARLSTGNLGMIALRNAYHGGSSGTIGLTA-LNTWK--YPIPQGEIHHVVNPDPYHGSFG 230
+AR +T G IA AYHG + T+ LT +N + + G ++ + P P HG
Sbjct: 121 IARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISE 180
Query: 231 SDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIA 290
DA A + + +A + E +QG GG +P +++ + + + G + IA
Sbjct: 181 DDA--IASIHRIFKNDAAPEDIAAIVIEPVQGSGGFYASSPAFMQRLRALCDEHGIMLIA 238
Query: 291 DEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNT 350
DEVQ+G GRTG+ + E GV PD+ T AK I G PL V E+ + +A T
Sbjct: 239 DEVQSGAGRTGT-LFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGT 297
Query: 351 FGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGM 410
+ GNP+ L VL+V ++E D+G L L + E+H IGDVRG G M+ +
Sbjct: 298 YAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAI 357
Query: 411 ELVTDRKEKTPAKAETAVLFEKLREXXXXXXXXXXXXXXFRIKPPMCFTKDDADF 465
EL D P TA + + R+ RI P+ T +DA
Sbjct: 358 ELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPL--TIEDAQI 410
>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|B Chain B, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|C Chain C, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|D Chain D, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SFF|A Chain A, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|B Chain B, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|C Chain C, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|D Chain D, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
Length = 426
Score = 176 bits (445), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 126/415 (30%), Positives = 194/415 (46%), Gaps = 12/415 (2%)
Query: 56 SADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHP 115
S ++ Q+R Q + + + P+ + ++D GR YLD GI ++ GH HP
Sbjct: 3 SNKELMQRRSQAIPRGVGQIH--PIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHP 60
Query: 116 DVLNAIFEQSKLLQHAT-TIYLHHAIADFAEALASKMPGNL-KVVYFVNSGTEANELAML 173
V+ A+ Q K L H + + + E + K+PG+ K V +G+EA E A+
Sbjct: 61 KVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVK 120
Query: 174 MARLSTGNLGMIALRNAYHGGSSGTIGLTA-LNTWK--YPIPQGEIHHVVNPDPYHGSFG 230
+AR +T G IA AYHG + T+ LT +N + + G ++ + P P HG
Sbjct: 121 IARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISE 180
Query: 231 SDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIA 290
DA A + + +A + E +QG GG +P +++ + + + G + IA
Sbjct: 181 DDA--IASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIA 238
Query: 291 DEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNT 350
DEVQ+G GRTG+ + E GV PD+ T AK I G PL V E+ + +A T
Sbjct: 239 DEVQSGAGRTGT-LFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGT 297
Query: 351 FGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGM 410
+ GNP+ L VL+V ++E D+G L L + E+H IGDVRG G M+ +
Sbjct: 298 YAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAI 357
Query: 411 ELVTDRKEKTPAKAETAVLFEKLREXXXXXXXXXXXXXXFRIKPPMCFTKDDADF 465
EL D P TA + + R+ RI P+ T +DA
Sbjct: 358 ELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPL--TIEDAQI 410
>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
Length = 426
Score = 174 bits (442), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 125/415 (30%), Positives = 193/415 (46%), Gaps = 12/415 (2%)
Query: 56 SADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHP 115
S ++ Q+R Q + + + P+ + ++D GR YLD GI ++ GH HP
Sbjct: 3 SNKELMQRRSQAIPRGVGQIH--PIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHP 60
Query: 116 DVLNAIFEQSKLLQHAT-TIYLHHAIADFAEALASKMPGNL-KVVYFVNSGTEANELAML 173
V+ A+ Q K L H + + + E + K+PG+ K V +G+EA E A+
Sbjct: 61 KVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVK 120
Query: 174 MARLSTGNLGMIALRNAYHGGSSGTIGLTA-LNTWK--YPIPQGEIHHVVNPDPYHGSFG 230
+AR +T G IA AYHG + T+ LT +N + + G ++ + P P HG
Sbjct: 121 IARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISE 180
Query: 231 SDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIA 290
DA A + + +A + E +QG GG +P +++ + + + G + IA
Sbjct: 181 DDA--IASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIA 238
Query: 291 DEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNT 350
DE Q+G GRTG+ + E GV PD+ T AK I G PL V E+ + +A T
Sbjct: 239 DEAQSGAGRTGT-LFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGT 297
Query: 351 FGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGM 410
+ GNP+ L VL+V ++E D+G L L + E+H IGDVRG G M+ +
Sbjct: 298 YAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAI 357
Query: 411 ELVTDRKEKTPAKAETAVLFEKLREXXXXXXXXXXXXXXFRIKPPMCFTKDDADF 465
EL D P TA + + R+ RI P+ T +DA
Sbjct: 358 ELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPL--TIEDAQI 410
>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|B Chain B, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|C Chain C, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|D Chain D, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
Length = 426
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 125/415 (30%), Positives = 193/415 (46%), Gaps = 12/415 (2%)
Query: 56 SADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHP 115
S ++ Q+R Q + + + P+ + ++D GR YLD G ++ GH HP
Sbjct: 3 SNKELMQRRSQAIPRGVGQIH--PIFADRAENCRVWDVEGREYLDFAGGQAVLNTGHLHP 60
Query: 116 DVLNAIFEQSKLLQHAT-TIYLHHAIADFAEALASKMPGNL-KVVYFVNSGTEANELAML 173
V+ A+ Q K L H + + + E + K+PG+ K V +G+EA E A+
Sbjct: 61 KVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVK 120
Query: 174 MARLSTGNLGMIALRNAYHGGSSGTIGLTA-LNTWK--YPIPQGEIHHVVNPDPYHGSFG 230
+AR +T G IA AYHG + T+ LT +N + + G ++ + P P HG
Sbjct: 121 IARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISE 180
Query: 231 SDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIA 290
DA A + + +A + E +QG GG +P +++ + + + G + IA
Sbjct: 181 DDA--IASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIA 238
Query: 291 DEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNT 350
DEVQ+G GRTG+ + E GV PD+ T AK I G PL V E+ + +A T
Sbjct: 239 DEVQSGAGRTGT-LFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGT 297
Query: 351 FGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGM 410
+ GNP+ L VL+V ++E D+G L L + E+H IGDVRG G M+ +
Sbjct: 298 YAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAI 357
Query: 411 ELVTDRKEKTPAKAETAVLFEKLREXXXXXXXXXXXXXXFRIKPPMCFTKDDADF 465
EL D P TA + + R+ RI P+ T +DA
Sbjct: 358 ELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPL--TIEDAQI 410
>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
pdb|2ORD|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
Length = 397
Score = 172 bits (436), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 122/401 (30%), Positives = 189/401 (47%), Gaps = 34/401 (8%)
Query: 75 YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTI 134
Y + P V GK +++DE G YLD +GI GH HP ++ AI +Q++ L H + +
Sbjct: 19 YSRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNL 78
Query: 135 YLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALR-----N 189
+ + + AE L+ G V+F N+GTEANE A+ +AR R N
Sbjct: 79 FWNRPQXELAELLSKNTFGG--KVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHN 136
Query: 190 AYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTS 249
++HG + G+ LTA KY P +P F +DL+ S
Sbjct: 137 SFHGRTLGS--LTATGQPKYQKPF---------EPLVPGFEYFEFNNVEDLRRK----XS 181
Query: 250 GKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFET 309
V E IQG G V +L+ + + + + DEVQ G GRTG + ++
Sbjct: 182 EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGXGRTGKLF-AYQK 240
Query: 310 QGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID 369
GV+PD++T AKG+G G+P+GAV+ E ANV+ TFGGNP+ G+ V++ +
Sbjct: 241 YGVVPDVLTTAKGLGGGVPIGAVIVN-ERANVLEPGDHGTTFGGNPLACRAGVTVIKELT 299
Query: 370 KERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVL 429
KE + G++L +L+ +E +D++ DVRG GL +G++ R+E + + T
Sbjct: 300 KEGFLEEVEEKGNYLXKKLQEXKEEYDVVADVRGXGLXIGIQF---REEVSNREVATKCF 356
Query: 430 FEKLREXXXXXXXXXXXXXXFRIKPPMCFTKDDADFLVDAL 470
KL R PP+ + D V+ L
Sbjct: 357 ENKL-------LVVPAGNNTIRFLPPLTVEYGEIDLAVETL 390
>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
pdb|2EH6|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
Length = 375
Score = 169 bits (428), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 124/403 (30%), Positives = 192/403 (47%), Gaps = 43/403 (10%)
Query: 74 HYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT 133
+Y + P+ V GK YL+DE G+ YLD +GI S GH +P + A+ EQ + L H +
Sbjct: 6 NYARLPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSN 65
Query: 134 IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG-----MIALR 188
+Y + + A L K V+F NSGTE+ E A+ +AR + G I+
Sbjct: 66 LYENPWQEELAHKLVKHFWTEGK-VFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFE 124
Query: 189 NAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT 248
N++HG + G++ T Q + H P S+ D+ D +
Sbjct: 125 NSFHGRTYGSLSATG---------QPKFHKGFEPLVPGFSYAK-----LNDI-DSVYKLL 169
Query: 249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFE 308
+ AG I E IQG GG E + +L + +I ++ + I DEVQTG GRTG Y ++
Sbjct: 170 DEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFY-AYQ 228
Query: 309 TQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPV-CSAGGLAVLRV 367
+ PD++ +AKG+G G+P+GA++ E+A +TFGGNP+ C AG + V V
Sbjct: 229 HFNLKPDVIALAKGLGGGVPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEV 288
Query: 368 IDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETA 427
E+ H +VG++ +L+ L + G V+GRGLM+G+EL + K+ E
Sbjct: 289 ---EKLLPHVREVGNYFKEKLKELGK-----GKVKGRGLMLGLELERECKDYVLKALEKG 340
Query: 428 VLFEKLREXXXXXXXXXXXXXXFRIKPPMCFTKDDADFLVDAL 470
+L R PP+ K+ D + L
Sbjct: 341 LLIN------------CTAGKVLRFLPPLIIQKEHIDRAISVL 371
>pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
pdb|3DXW|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
Length = 452
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 134/403 (33%), Positives = 197/403 (48%), Gaps = 7/403 (1%)
Query: 79 PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHH 138
PL I G+ L +ENGR +D S G+ HP ++ A+ + AT + +
Sbjct: 39 PLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASN 98
Query: 139 AIA-DFAEALASKMPGN-LKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSS 196
A A AE L + PG ++F +SG++ANE A +TG G+IA AYHG +
Sbjct: 99 APAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTV 158
Query: 197 GTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYA--QDLQDHIDFGTSGKVAG 254
G++ + + + + PDPY + +D A L + + +G +
Sbjct: 159 GSMAFSGHSVQADAAKADGLILLPYPDPYR-PYRNDPTGDAILTLLTEKLAAVPAGSIGA 217
Query: 255 FIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIP 314
E IQ GG + G+L+ DI R G + + DEV+ G R+G + FE +G +P
Sbjct: 218 AFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHC-FEHEGFVP 276
Query: 315 DIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQ 374
DI+ + KG+G GLPL AV+ EI + A T GNP+ +A GLAVL ID++
Sbjct: 277 DILVLGKGLGGGLPLSAVIAPAEILDC-ASAFAMQTLHGNPISAAAGLAVLETIDRDDLP 335
Query: 375 AHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLR 434
A G L L L +RH +IGD+RGRGL GMELV DR+ + PA+AETA L +
Sbjct: 336 AMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLIYRAY 395
Query: 435 EXXXXXXXXXXXXXXFRIKPPMCFTKDDADFLVDALDYSMSKL 477
+ PP+ T+ D +D LD + S+L
Sbjct: 396 QLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSEL 438
>pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|2ZUK|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|3DXV|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
pdb|3DXV|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
Length = 439
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 134/403 (33%), Positives = 197/403 (48%), Gaps = 7/403 (1%)
Query: 79 PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHH 138
PL I G+ L +ENGR +D S G+ HP ++ A+ + AT + +
Sbjct: 26 PLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASN 85
Query: 139 AIA-DFAEALASKMPGN-LKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSS 196
A A AE L + PG ++F +SG++ANE A +TG G+IA AYHG +
Sbjct: 86 APAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTV 145
Query: 197 GTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYA--QDLQDHIDFGTSGKVAG 254
G++ + + + + PDPY + +D A L + + +G +
Sbjct: 146 GSMAFSGHSVQADAAKADGLILLPYPDPYR-PYRNDPTGDAILTLLTEKLAAVPAGSIGA 204
Query: 255 FIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIP 314
E IQ GG + G+L+ DI R G + + DEV+ G R+G + FE +G +P
Sbjct: 205 AFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHC-FEHEGFVP 263
Query: 315 DIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQ 374
DI+ + KG+G GLPL AV+ EI + A T GNP+ +A GLAVL ID++
Sbjct: 264 DILVLGKGLGGGLPLSAVIAPAEILDC-ASAFAMQTLHGNPISAAAGLAVLETIDRDDLP 322
Query: 375 AHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLR 434
A G L L L +RH +IGD+RGRGL GMELV DR+ + PA+AETA L +
Sbjct: 323 AMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLIYRAY 382
Query: 435 EXXXXXXXXXXXXXXFRIKPPMCFTKDDADFLVDALDYSMSKL 477
+ PP+ T+ D +D LD + S+L
Sbjct: 383 QLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSEL 425
>pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|B Chain B, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|C Chain C, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|D Chain D, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
Length = 453
Score = 166 bits (419), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 139/431 (32%), Positives = 208/431 (48%), Gaps = 18/431 (4%)
Query: 51 PYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSC 110
P GP + + ++R+ + + P+ V+ + D +G ++D AGI +
Sbjct: 21 PLPGPRSGALAERRRAAVSAGVGS--TAPVYAVDADGGVIVDADGNSFIDLGAGIAVTTV 78
Query: 111 GHCHPDVLNAIFEQSKLLQHAT-TIYLHHAIADFAEALASKMPGNL-KVVYFVNSGTEAN 168
G HP V AI +Q+ H + + AE L + PG+ K NSG EA
Sbjct: 79 GASHPAVAAAIADQATHFTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAV 138
Query: 169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQG----EIHHVVNPDP 224
E A+ +ARL+TG ++A NAYHG ++ T+ LTA + Y G E++ + P
Sbjct: 139 ENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTA-KSMPYKSQFGPFAPEVYRMPASYP 197
Query: 225 YH---GSFGSDAARYA-QDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDI 280
G G +AAR A ++ I + +A I E IQG GG + APG+L +
Sbjct: 198 LRDEPGLTGEEAARRAISRIETQIG---AQSLAAIIIEPIQGEGGFIVPAPGFLATLTAW 254
Query: 281 VRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIAN 340
+ G V IADEVQTGF RTG+ ++ E +G++PDIVTMA GI G+PL AV E+ +
Sbjct: 255 ASENGVVFIADEVQTGFARTGA-WFASEHEGIVPDIVTMAXGIAGGMPLSAVTGRAELMD 313
Query: 341 VMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGD 400
+ T+GGNPV A +A L V+ + A + + + RL L E DIIG+
Sbjct: 314 AVYAGGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGE 373
Query: 401 VRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLREXXXXXXXXXXXXXXFRIKPPMCFTK 460
VRGRG M+ +E+V + A ++ E L + R+ PP+
Sbjct: 374 VRGRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQ-GVLILTCGTFGNVIRLLPPLVIGD 432
Query: 461 DDADFLVDALD 471
D D + AL
Sbjct: 433 DLLDEGITALS 443
>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|B Chain B, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|C Chain C, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|D Chain D, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
Length = 452
Score = 162 bits (410), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 126/414 (30%), Positives = 189/414 (45%), Gaps = 28/414 (6%)
Query: 89 YLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALA 148
++ D G+RYLD +G+ V+ G+ ++ A ++Q + L + H AE L
Sbjct: 42 WVEDIQGKRYLDGXSGLWCVNSGYGRKELAEAAYKQLQTLSYFPXSQSHEPAIKLAEKLN 101
Query: 149 SKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG------MIALRNAYHGGSSGTIGLT 202
+ G V++F NSG+EANE A +AR G + YHG + T T
Sbjct: 102 EWLGGEY-VIFFSNSGSEANETAFKIARQYYAQKGEPHRYKFXSRYRGYHGNTXATXAAT 160
Query: 203 ALNTWKY---PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHID----FGTSGKVAGF 255
+Y P G +H V PD Y Y + +D + S +A F
Sbjct: 161 GQAQRRYQYEPFASGFLH-VTPPDCYRXPGIERENIYDVECVKEVDRVXTWELSETIAAF 219
Query: 256 IAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPD 315
I E I GG + Y K V++ +K G + I+DEV GFGRTG + GF V PD
Sbjct: 220 IXEPIITGGGILXAPQDYXKAVHETCQKHGALLISDEVICGFGRTGKAF-GFXNYDVKPD 278
Query: 316 IVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQF------NTFGGNPVCSAGGLAVLRVI 368
I+T AKGI + LPL A EI K ++ NTFGGNP A L L +I
Sbjct: 279 IITXAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEII 338
Query: 369 DKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAET-A 427
+ E A GS LL +L+ H ++GD+RG+GL+VG+ELV D++ K P + A
Sbjct: 339 ENENLIERSAQXGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETKEPIDNDKIA 398
Query: 428 VLFEKLREXXXXXXXXXXXXXXFR----IKPPMCFTKDDADFLVDALDYSMSKL 477
+ +E + + PP+ + ++ F++ L + ++
Sbjct: 399 SVVNACKEKGLIIGRNGXTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAXERI 452
>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
Length = 406
Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 114/361 (31%), Positives = 169/361 (46%), Gaps = 30/361 (8%)
Query: 64 RKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFE 123
R+ F I Y P V G+ L+D+ G+ Y+D GI + GH HP++ A+ E
Sbjct: 7 RENFDEWMIPVYAPAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNE 66
Query: 124 QSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMAR------L 177
Q+ H Y + + A+ L + V+F NSG EANE A+ +AR
Sbjct: 67 QASKFWHTGNGYTNEPVLRLAKKLIDATFADR--VFFCNSGAEANEAALKLARKFAHDRY 124
Query: 178 STGNLGMIALRNAYHGGSSGTI---GLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAA 234
+ G++A +NA+HG + T+ G A + P+P +I H D S D +
Sbjct: 125 GSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLP-ADIRHAAYNDINSASALIDDS 183
Query: 235 RYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQ 294
A I E IQG GG V + +L+ + ++ + + I DEVQ
Sbjct: 184 TCA-----------------VIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQ 226
Query: 295 TGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGN 354
TG GRTG Y + GV PD++T AK +G G P+GA++ T E A VM T+GGN
Sbjct: 227 TGVGRTGELY-AYMHYGVTPDLLTTAKALGGGFPVGALLATEECARVMTVGTHGTTYGGN 285
Query: 355 PVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVT 414
P+ SA VL +I+ + RL T+ R+ + +VRG GL++G L
Sbjct: 286 PLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNA 345
Query: 415 D 415
D
Sbjct: 346 D 346
>pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
pdb|3HMU|B Chain B, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
Length = 472
Score = 151 bits (382), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 116/403 (28%), Positives = 190/403 (47%), Gaps = 24/403 (5%)
Query: 82 IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIY--LHHA 139
I + +L D G LDA AG+ V+ G+ ++ Q + L + T + H
Sbjct: 41 ITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFKTTHVP 100
Query: 140 IADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG------MIALRNAYHG 193
A+ LA PG+L V+F G+EAN+ + M R N G +I+ +NAYHG
Sbjct: 101 AIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHG 160
Query: 194 ---GSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARY----AQDLQDHIDF 246
SS G+ ++ IP ++HH+ P+ + D + A++L++ I
Sbjct: 161 STVASSALGGMAGMHAQSGLIP--DVHHINQPNWWAEGGDMDPEEFGLARARELEEAILE 218
Query: 247 GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWG 306
+VA FIAE +QG GG + Y + I K + IADEV GFGRTG+ ++G
Sbjct: 219 LGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGN-WFG 277
Query: 307 FETQGVIPDIVTMAKGIGNGL-PLGAVVTTPEIANVMAQKIQFN---TFGGNPVCSAGGL 362
+T G+ P I+T+AKG+ +G P+G + E+A+V+ K +FN T+ G+PV +A L
Sbjct: 278 TQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIG-KDEFNHGYTYSGHPVAAAVAL 336
Query: 363 AVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPA 422
LR++++E H +V + L H ++G+ + G+M + L ++ +
Sbjct: 337 ENLRILEEENILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGMMASIALTPNKASRAKF 396
Query: 423 KAETAVLFEKLREXX-XXXXXXXXXXXXFRIKPPMCFTKDDAD 464
+E + RE I PP+ T + D
Sbjct: 397 ASEPGTIGYICRERCFANNLIMRHVGDRMIISPPLVITPAEID 439
>pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB0|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
Length = 420
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 110/348 (31%), Positives = 163/348 (46%), Gaps = 48/348 (13%)
Query: 83 VEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIAD 142
V+GK ++D+ G+ Y+D GI + GHCHP ++ A+ Q + L H + ++ +
Sbjct: 44 VKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTNEPALR 103
Query: 143 FAEALASKMPGNLKVVYFVNSGTEANELAMLMARL------STGNLGMIALRNAYHGGSS 196
L + V F+NSGTEANE A +AR S +IA NA+HG S
Sbjct: 104 LGRKLIDATFA--ERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSL 161
Query: 197 GTIGLTALNTWKY---PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVA 253
T+ + + P P IH N D + DH
Sbjct: 162 FTVSVGGQPKYSDGFGPKPADIIHVPFN----------DLHAVKAVMDDH--------TC 203
Query: 254 GFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVI 313
+ E IQG GG P +LK + D+ + + + DEVQ G GRTG + + GV
Sbjct: 204 AVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGD-LFAYMHYGVT 262
Query: 314 PDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPV-CSAGGLA--------V 364
PDI+T AK +G G P+ A++TT EIA+ +T+GGNP+ C+ G A V
Sbjct: 263 PDILTSAKALGGGFPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPEV 322
Query: 365 LRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMEL 412
L+ I +R+Q + L+ + E+ DI D+RG GL++G EL
Sbjct: 323 LQGIHTKRQQ---------FVQHLQAIDEQFDIFSDIRGMGLLIGAEL 361
>pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 453
Score = 147 bits (372), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 116/342 (33%), Positives = 169/342 (49%), Gaps = 10/342 (2%)
Query: 79 PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHAT-TIYLH 137
P+ +V L D +G + +D +GI + G+ P V++A+ +Q H + +
Sbjct: 51 PVYVVAAGGGVLADADGNQLIDFGSGIAVTTVGNSAPAVVDAVTQQVAAFTHTCFMVTPY 110
Query: 138 HAIADFAEALASKMPGN-LKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSS 196
AE L PG+ K NSG EA E A+ +AR T ++ +AYHG ++
Sbjct: 111 EGYVKVAEHLNRLTPGDHEKRTALFNSGAEAVENAVKIARAYTRRQAVVVFDHAYHGRTN 170
Query: 197 GTIGLTALNT-WKY---PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG-K 251
T+ +TA N +K+ P E++ V P+ +D A A D I+
Sbjct: 171 LTMAMTAKNQPYKHGFGPFAN-EVYRVPTSYPFRDG-ETDGAAAAAHALDLINKQVGADN 228
Query: 252 VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQG 311
VA + E + G GG V APG+L + G V +ADEVQTGF RTG+ + E +
Sbjct: 229 VAAVVIEPVHGEGGFVVPAPGFLGALQKWCTDNGAVFVADEVQTGFARTGA-LFACEHEN 287
Query: 312 VIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKE 371
V+PD++ AKGI GLPL AV EI + T+GGNP+ A LAV+ I++E
Sbjct: 288 VVPDLIVTAKGIAGGLPLSAVTGRAEIMDGPQSGGLGGTYGGNPLACAAALAVIDTIERE 347
Query: 372 RRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELV 413
A +G +L RL L IG+VRGRG M+ +ELV
Sbjct: 348 NLVARARAIGETMLSRLGALAAADPRIGEVRGRGAMIAVELV 389
>pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|B Chain B, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|C Chain C, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|D Chain D, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 116/422 (27%), Positives = 189/422 (44%), Gaps = 32/422 (7%)
Query: 82 IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLL--QHATTIYLHHA 139
+ G+ Y+ D NGRRYLDA +G+ + G H +++A Q + HA +
Sbjct: 53 VTHGEGPYIVDVNGRRYLDANSGLFNMVAGFDHKGLIDAAKAQYERFPGYHAAFGKMSDQ 112
Query: 140 IADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG------MIALRNAYHG 193
+E L P + V++ NSG+EAN+ + M G ++ NAYHG
Sbjct: 113 TVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHG 172
Query: 194 GSSGTIGLTAL---NTWKYPIPQGEIHHVVNPDPYHGSFGSDA-------ARYAQDLQDH 243
++ + +T + + P+P G +H P++ +G + AR A++L++
Sbjct: 173 ATAVSASMTGFPYNSVFGLPLP-GFVHLTC---PHYWRYGEEGETEEQFVARLARELEET 228
Query: 244 IDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSH 303
I + +AGF AE + G GG + A GY + + I+RK I+DEV GFGRTG+
Sbjct: 229 IQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVVCGFGRTGNT 288
Query: 304 YWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQF-------NTFGGNP 355
WG T PD + + + G P+GAV+ PE++ + I+ T G+P
Sbjct: 289 -WGCVTYDFTPDAIISSXNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHP 347
Query: 356 VCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTD 415
V A L + V+ E + + RL+ + ER + IG+ RG G M +E V D
Sbjct: 348 VGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPN-IGEYRGIGFMWALEAVKD 406
Query: 416 RKEKTPAKAETAVLFEKLREXXXXXXXXXXXXXXFRIKPPMCFTKDDADFLVDALDYSMS 475
+ KTP +V + PP T+ D + D L+ ++
Sbjct: 407 KASKTPFDGNLSVSERIANTCTDLGLICFPLGQSVVLCPPFILTEAQMDEMFDKLEKALD 466
Query: 476 KL 477
K+
Sbjct: 467 KV 468
>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt
From Mycobacterium Marinum Covalently Bound To Pyridoxal
Phosphate
Length = 467
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 128/413 (30%), Positives = 184/413 (44%), Gaps = 34/413 (8%)
Query: 79 PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHAT-TIYLH 137
P+ +V + D +G R +D +GI + G+ P V++A+ +Q + H + +
Sbjct: 61 PVFVVRAGGGIVEDADGNRLIDLGSGIAVTTIGNSAPRVVDAVRDQVEQFTHTCFMVTPY 120
Query: 138 HAIADFAEALASKMPGN-LKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSS 196
AE L PG+ K NSG EA E ++ +AR T ++A AYHG ++
Sbjct: 121 EQYVAVAEQLNRITPGSGEKRTVLFNSGAEAVENSIKVARAHTRKQAVVAFDYAYHGRTN 180
Query: 197 GTIGLTALNTWKYPIPQG------EIHHVVNPDPYHGSF--------GSDAARYAQDLQD 242
T+ LTA P G EI+ PY + G AA A +L D
Sbjct: 181 LTMALTA---KSMPYKSGFGPFAPEIYRAPVSYPYRDNLLDKDIATDGELAAERAINLID 237
Query: 243 HIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS 302
G + +A I E I G GG + A G+L + R V IADEVQTGF RTG+
Sbjct: 238 K-QIG-AANLAAVIIEPIAGEGGFIVPADGFLPALQRWCRDNDVVFIADEVQTGFARTGA 295
Query: 303 HYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGL 362
+ + + V PD++ A GI +G PL AV EI + TFGGNPV A L
Sbjct: 296 MF-ACDHENVEPDLIVTAXGIADGFPLSAVTGRAEIMDAPHTSGLGGTFGGNPVACAAAL 354
Query: 363 AVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPA 422
A + I+++ + ++ RL LQ D +GDVRGRG M+ MELV K+
Sbjct: 355 ATIETIERDGMVERARQIERLVMDRLLRLQAADDRLGDVRGRGAMIAMELV-----KSGT 409
Query: 423 KAETAVLFEKLREXXXXXXXXXXXXXXF----RIKPPMCFTKDDADFLVDALD 471
A L +KL F R+ PP+ + + L + LD
Sbjct: 410 AEPDAALTQKLAAAAHAAGVIVLTCGMFGNVIRLLPPLTISD---ELLSEGLD 459
>pdb|3FCR|A Chain A, Crystal Structure Of Putative Aminotransferase
(Yp_614685.1) From Silicibacter Sp. Tm1040 At 1.80 A
Resolution
Length = 459
Score = 146 bits (368), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 114/407 (28%), Positives = 194/407 (47%), Gaps = 28/407 (6%)
Query: 89 YLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLH--HAIADFAEA 146
++ D +G + LDAFAG+ V+ G+ ++ AI +Q++ L + + H A A+
Sbjct: 43 FIEDRDGTKLLDAFAGLYCVNVGYGRQEIAEAIADQARELAYYHSYVGHGTEASITLAKX 102
Query: 147 LASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG------MIALRNAYHGGSSGTIG 200
+ + P N VYF G++ANE + + LG +I+ YHG T
Sbjct: 103 ILDRAPKNXSKVYFGLGGSDANETNVKLIWYYNNILGRPEKKKIISRWRGYHGSGLVTGS 162
Query: 201 LTALNTW--KYPIPQGEIHHVVNP-----DPYHGSFGSDAARYAQDLQDHIDFGTSGKVA 253
LT L + K+ +P ++ H P + + + A +L+ I+ + +A
Sbjct: 163 LTGLELFHKKFDLPVEQVIHTEAPYYFRREDLNQTEEQFVAHCVAELEALIEREGADTIA 222
Query: 254 GFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVI 313
FI E I G GG V GY + + ++ K + +ADEV TGFGR G+ + G + G+
Sbjct: 223 AFIGEPILGTGGIVPPPAGYWEAIQTVLNKHDILLVADEVVTGFGRLGTXF-GSDHYGLE 281
Query: 314 PDIVTMA-KGIGNGL-PLGAVVTTPEIANVMAQKIQFN-------TFGGNPVCSAGGLAV 364
PDI+T+A KG+ + PL + + ++ V+ Q N T+ +P+ +A G+A
Sbjct: 282 PDIITIAXKGLTSAYAPLSGSIVSDKVWKVLEQGTDENGPIGHGWTYSAHPIGAAAGVAN 341
Query: 365 LRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKA 424
L+++D+ ++ +VG++L +H +GDVRG GL+ +E V DR +T A
Sbjct: 342 LKLLDELNLVSNAGEVGAYLNATXAEALSQHANVGDVRGEGLLCAVEFVKDRDSRTFFDA 401
Query: 425 ETAV---LFEKLREXXXXXXXXXXXXXXFRIKPPMCFTKDDADFLVD 468
+ + KL E PP C T+ +AD +V+
Sbjct: 402 ADKIGPQISAKLLEQDKIIARAXPQGDILGFAPPFCLTRAEADQVVE 448
>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 451
Score = 145 bits (367), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 117/355 (32%), Positives = 160/355 (45%), Gaps = 30/355 (8%)
Query: 79 PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHAT-TIYLH 137
P+ V + D +G R +D +GI + G+ P V+ A+ Q H + +
Sbjct: 44 PVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTPY 103
Query: 138 HAIADFAEALASKMP--GNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGS 195
E L P G+ + F NSG+EA E A+ +AR T ++A +AYHG +
Sbjct: 104 EGYVAVCEQLNRLTPVRGDKRSALF-NSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRT 162
Query: 196 SGTIGLTA-----------------LNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQ 238
+ T+ LTA YP E + D G + A
Sbjct: 163 NLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATD---GELAAKRAITVI 219
Query: 239 DLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFG 298
D Q D +A + E IQG GG + A G+L + D RK V IADEVQTGF
Sbjct: 220 DKQIGAD-----NLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFA 274
Query: 299 RTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCS 358
RTG+ + E +G+ PD++ A GI GLPL AV EI + T+GGNP+
Sbjct: 275 RTGAMF-ACEHEGIDPDLIVTAXGIAGGLPLSAVTGRAEIMDSPHVSGLGGTYGGNPIAC 333
Query: 359 AGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELV 413
A LA + I+ E A + + RL LQ D IGDVRGRG M+ MELV
Sbjct: 334 AAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELV 388
>pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
pdb|3NUI|B Chain B, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
Length = 478
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 117/422 (27%), Positives = 190/422 (45%), Gaps = 32/422 (7%)
Query: 82 IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLL--QHATTIYLHHA 139
+ G+ Y+ D NGRRYLDA +G+ + G H +++A Q + HA +
Sbjct: 47 VTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFGRMSDQ 106
Query: 140 IADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG------MIALRNAYHG 193
+E L P + V++ NSG+EAN+ + M G ++ NAYHG
Sbjct: 107 TVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHG 166
Query: 194 GSSGTIGLTAL---NTWKYPIPQGEIHHVVNPDPYHGSFGSDA-------ARYAQDLQDH 243
++ + +T + + P+P G +H P++ +G + AR A++L++
Sbjct: 167 VTAVSASMTGKPYNSVFGLPLP-GFVHLTC---PHYWRYGEEGETEEQFVARLARELEET 222
Query: 244 IDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSH 303
I + +AGF AE + G GG + A GY + + I+RK I+DEV GFGRTG +
Sbjct: 223 IQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTG-N 281
Query: 304 YWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQF-------NTFGGNP 355
WG T PD + +K + G P+GAV+ PE++ + I+ T G+P
Sbjct: 282 TWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHP 341
Query: 356 VCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTD 415
V A L + V+ E + + RL+ + ER + IG+ RG G M +E V D
Sbjct: 342 VGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPN-IGEYRGIGFMWALEAVKD 400
Query: 416 RKEKTPAKAETAVLFEKLREXXXXXXXXXXXXXXFRIKPPMCFTKDDADFLVDALDYSMS 475
+ KTP +V + PP T+ D + D L+ ++
Sbjct: 401 KASKTPFDGNLSVSERIANTCTDLGLICRPLGQSVVLCPPFILTEAQMDEMFDKLEKALD 460
Query: 476 KL 477
K+
Sbjct: 461 KV 462
>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|B Chain B, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|C Chain C, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|D Chain D, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|E Chain E, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|F Chain F, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
Length = 433
Score = 141 bits (355), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 111/404 (27%), Positives = 182/404 (45%), Gaps = 43/404 (10%)
Query: 74 HYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT 133
+Y P+ + K +++D N +RY D + +V+ GHCHP++LNA+ Q+K L +
Sbjct: 43 NYDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSR 102
Query: 134 IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMAR--------LSTGNLGMI 185
+ + E + + G KV+ +N+G EANE A + R + ++
Sbjct: 103 AFFSVPLG-ICERYLTNLLGYDKVL-MMNTGAEANETAYKLCRKWGYEVKKIPENMAKIV 160
Query: 186 ALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHID 245
+N + G + G I +A T K G + PY D ++L+D
Sbjct: 161 VCKNNFSGRTLGCI--SASTTKKCTSNFGPFAPQFSKVPY-----DDLEALEEELKD--- 210
Query: 246 FGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS--- 302
V FI E IQG G + + YL+ VYDI +K + +ADEVQTG GRTG
Sbjct: 211 ----PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLC 266
Query: 303 -HYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAG 360
H++ V PD++ + K + G P+ AV+ +I V+ +T+GGNP+ ++
Sbjct: 267 VHHY-----NVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASI 321
Query: 361 GLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKT 420
+ L V+ E+ + +G L L+ + I+ DVRG+GL+ +E +
Sbjct: 322 CVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNEL---- 377
Query: 421 PAKAETAVLFEKLREXXXXXXXXXXXXXXFRIKPPMCFTKDDAD 464
VL L+ R+ PP+C TK+ D
Sbjct: 378 -----VNVLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLD 416
>pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|B Chain B, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|C Chain C, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|D Chain D, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|E Chain E, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|F Chain F, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|G Chain G, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|H Chain H, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|I Chain I, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|J Chain J, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|K Chain K, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|L Chain L, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATQ|A Chain A, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|B Chain B, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|C Chain C, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|D Chain D, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|E Chain E, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|F Chain F, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|G Chain G, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|H Chain H, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|I Chain I, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|J Chain J, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|K Chain K, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|L Chain L, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
Length = 456
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 127/435 (29%), Positives = 207/435 (47%), Gaps = 25/435 (5%)
Query: 52 YTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCG 111
+ GP + + ++R + + P+ + + + D +G ++D +GI S G
Sbjct: 22 FPGPKSQALAERRSAVVAAGVASGV--PVYVEDADGGIIRDVDGNSFIDLGSGIAVTSVG 79
Query: 112 HCHPDVLNAIFEQSKLLQHAT-TIYLHHAIADFAEALASKMPGN-LKVVYFVNSGTEANE 169
P V+ A+ E + H + + E L PG+ K NSG EA E
Sbjct: 80 ASDPAVVAAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVE 139
Query: 170 LAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQG----EIHHVVNPDPY 225
A+ +ARL+TG ++A +AYHG ++ T+ LTA Y G E++ + P+
Sbjct: 140 NAVKVARLATGRDAVVAFDHAYHGRTNLTMALTA-KAMPYKTNFGPFAPEVYRMPMSYPF 198
Query: 226 HGS----FGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIV 281
G++AA+ A + + G +VA I E IQG GG + A G+L + +
Sbjct: 199 REENPEITGAEAAKRAITMIEKQIGGD--QVAAIIIEPIQGEGGFIVPAEGFLPALSEWA 256
Query: 282 RKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANV 341
++ G V IADEVQ+GF RTG ++ + +GV+PDI+TMAKGI GLPL A+ ++ +
Sbjct: 257 KEKGIVFIADEVQSGFCRTG-EWFAVDHEGVVPDIITMAKGIAGGLPLSAITGRADLLDA 315
Query: 342 MAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQER-----HD 396
+ T+GGNPV A LA + +++ + LG+LR L
Sbjct: 316 VHPGGLGGTYGGNPVACAAALAAIDTMEQHDLNGRARHIEELALGKLRELAAELSAGGGS 375
Query: 397 IIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLREXXXXXXXXXXXXXXFRIKPPM 456
++GD+RGRG M+ +ELV ++ A+ AV L+E R+ PP+
Sbjct: 376 VVGDIRGRGAMLAIELVQPGSKEPNAELTKAVAAACLKE-GVIILTCGTYGNVIRLLPPL 434
Query: 457 CFTKDDADFLVDALD 471
+ + L+D L+
Sbjct: 435 VISD---ELLIDGLE 446
>pdb|3GJU|A Chain A, Crystal Structure Of A Putative Aminotransferase (Mll7127)
From Mesorhizobium Loti Maff303099 At 1.55 A Resolution
Length = 459
Score = 138 bits (347), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 110/409 (26%), Positives = 188/409 (45%), Gaps = 27/409 (6%)
Query: 85 GKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ--HATTIYLHHAIAD 142
G+ ++D NGR+ +DAFAG+ V+ G+ + +AI Q+K L HA + A
Sbjct: 40 GEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAYVGHGTEASIT 99
Query: 143 FAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG------MIALRNAYHGGSS 196
A+ + + P VYF SG++ANE + + LG +I+ YHG
Sbjct: 100 LAKXIIDRAPKGXSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGV 159
Query: 197 GTIGLTALNTW--KYPIPQGEIHHVVNPDPYHGSFGSDAA-RYAQDLQDHIDFGTSGK-- 251
T LT L+ + + +P+ + H P + + S + +++Q D ++ +
Sbjct: 160 XTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSXSEEQFSQHCADKLEEXILAEGP 219
Query: 252 --VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFET 309
+A FI E I G GG V GY + + +++K + +ADEV TGFGR G+ + G +
Sbjct: 220 ETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTXF-GSDH 278
Query: 310 QGVIPDIVTMA-KGIGNGL-PLGAVVTTPEIANVMAQKI-------QFNTFGGNPVCSAG 360
G+ PD++T+A KG+ + PL V+ + V+ Q T+ +P+C A
Sbjct: 279 YGIKPDLITIAXKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAA 338
Query: 361 GLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKT 420
G+A L +ID+ + + G++ L H +G+VRG G + +E V D+ ++
Sbjct: 339 GVANLELIDEXDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGXLAAVEFVADKDDRV 398
Query: 421 --PAKAETAVLFEKLREXXXXXXXXXXXXXXFRIKPPMCFTKDDADFLV 467
A + PP+C T++ AD +V
Sbjct: 399 FFDASQKIGPQVATALAASGVIGRAXPQGDILGFAPPLCLTREQADIVV 447
>pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|B Chain B, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|C Chain C, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|D Chain D, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 120/422 (28%), Positives = 183/422 (43%), Gaps = 32/422 (7%)
Query: 82 IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ--HATTIYLHHA 139
+ G+ Y+ D NGRRYLDA +G+ G H +++A Q + HA
Sbjct: 53 VTHGEGPYIVDVNGRRYLDANSGLWNXVAGFDHKGLIDAAKAQYERFPGYHAFFGRXSDQ 112
Query: 140 IADFAEALASKMPGNLKVVYFVNSGTEANE-----LAMLMARLSTGNLGMIALR-NAYHG 193
+E L P + V++ NSG+EAN+ L L A I R NAYHG
Sbjct: 113 TVXLSEKLVEVSPFDSGRVFYTNSGSEANDTXVKXLWFLHAAEGKPQKRKILTRWNAYHG 172
Query: 194 G---SSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDA-------ARYAQDLQDH 243
S+ G + + P+P G +H P++ +G + AR A++L++
Sbjct: 173 VTAVSASXTGKPYNSVFGLPLP-GFVHLTC---PHYWRYGEEGETEEQFVARLARELEET 228
Query: 244 IDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSH 303
I + +AGF AE + G GG + A GY + + I+RK I+DEV GFGRTG +
Sbjct: 229 IQREGADTIAGFFAEPVXGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTG-N 287
Query: 304 YWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQF-------NTFGGNP 355
WG T PD + +K + G P GAV+ PE++ + I+ T G+P
Sbjct: 288 TWGCVTYDFTPDAIISSKNLTAGFFPXGAVILGPELSKRLETAIEAIEEFPHGFTASGHP 347
Query: 356 VCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTD 415
V A L + V+ E + + RL+ + ER + IG+ RG G +E V D
Sbjct: 348 VGCAIALKAIDVVXNEGLAENVRRLAPRFEERLKHIAERPN-IGEYRGIGFXWALEAVKD 406
Query: 416 RKEKTPAKAETAVLFEKLREXXXXXXXXXXXXXXFRIKPPMCFTKDDADFLVDALDYSMS 475
+ KTP +V + PP T+ D D L+ ++
Sbjct: 407 KASKTPFDGNLSVSERIANTCTDLGLICRPLGQSVVLCPPFILTEAQXDEXFDKLEKALD 466
Query: 476 KL 477
K+
Sbjct: 467 KV 468
>pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|B Chain B, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|C Chain C, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|D Chain D, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
Length = 465
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 114/422 (27%), Positives = 188/422 (44%), Gaps = 32/422 (7%)
Query: 82 IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ--HATTIYLHHA 139
+ G+ Y+ D +GRRYLDA +G+ + G H ++ A Q HA +
Sbjct: 45 VTHGEGPYIVDVHGRRYLDANSGLWNMVAGFDHKGLIEAAKAQYDRFPGYHAFFGRMSDQ 104
Query: 140 IADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG------MIALRNAYHG 193
+E L P + V++ NSG+EAN+ + M G ++ NAYHG
Sbjct: 105 TVMLSEKLVEVSPFDNGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHG 164
Query: 194 GSSGTIGLTAL---NTWKYPIPQGEIHHVVNPDPYHGSFGSDA-------ARYAQDLQDH 243
++ + +T + + P+P G IH P++ +G + AR A++L+D
Sbjct: 165 VTAVSASMTGKPYNSVFGLPLP-GFIHLTC---PHYWRYGEEGETEAQFVARLARELEDT 220
Query: 244 IDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSH 303
I + +AGF AE + G GG + A GY + + I+RK I+DEV GFGRTG+
Sbjct: 221 ITREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPMISDEVICGFGRTGNT 280
Query: 304 YWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQF-------NTFGGNP 355
WG T +PD + + + G P+GAV+ P++A + ++ T G+P
Sbjct: 281 -WGCLTYDFMPDAIISSXNLTAGFFPMGAVILGPDLAKRVEAAVEAIEEFPHGFTASGHP 339
Query: 356 VCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTD 415
V A L + V+ E + + L+ + +R + IG+ RG G M +E V D
Sbjct: 340 VGCAIALKAIDVVMNEGLAENVRRLAPRFEAGLKRIADRPN-IGEYRGIGFMWALEAVKD 398
Query: 416 RKEKTPAKAETAVLFEKLREXXXXXXXXXXXXXXFRIKPPMCFTKDDADFLVDALDYSMS 475
+ KTP A +V + PP T+ D + + L+ ++
Sbjct: 399 KPTKTPFDANLSVSERIANTCTDLGLICRPLGQSIVLCPPFILTEAQMDEMFEKLEKALD 458
Query: 476 KL 477
K+
Sbjct: 459 KV 460
>pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|B Chain B, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|C Chain C, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
Length = 439
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 107/365 (29%), Positives = 169/365 (46%), Gaps = 37/365 (10%)
Query: 55 PSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCH 114
P++D +F++ ++ + + P+ + GK YL+D GR+Y D + I V+ GHCH
Sbjct: 38 PTSDDIFEREYKY---GAHNAHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCH 94
Query: 115 PDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLM 174
P ++NA+ Q L + + ++ + ++ E + N V +N+G EA E A +
Sbjct: 95 PKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLF--NYHKVLPMNTGVEAGETACKL 152
Query: 175 ARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFG---- 230
AR + I A I A N W + I +P Y G FG
Sbjct: 153 ARKWGYTVKGIQKYKA-------KIVFAAGNFWGRTL--SAISSSTDPTSYDG-FGPFMP 202
Query: 231 -------SDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRK 283
+D + LQD VA F+ E IQG G V PGYL V ++ +
Sbjct: 203 GFDIIPYNDLPALERALQDP-------NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTR 255
Query: 284 AGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGL-PLGAVVTTPEIANVM 342
+ IADE+QTG RTG + + + V PDIV + K + GL P+ AV+ +I +
Sbjct: 256 HQVLFIADEIQTGLARTG-RWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTI 314
Query: 343 AQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVR 402
F+T+GGNP+ +A L V+++E + +G L L L D++ VR
Sbjct: 315 KPGEHFSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPS--DVVTAVR 372
Query: 403 GRGLM 407
G+GL+
Sbjct: 373 GKGLL 377
>pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|B Chain B, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|C Chain C, Ornithine Aminotransferase Mutant Y85i
Length = 439
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 107/365 (29%), Positives = 169/365 (46%), Gaps = 37/365 (10%)
Query: 55 PSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCH 114
P++D +F++ ++ +Y+ P+ + GK YL+D GR+Y D + I V+ GHCH
Sbjct: 38 PTSDDIFEREYKY---GAHNYHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCH 94
Query: 115 PDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLM 174
P ++NA+ Q L + + ++ + ++ E + N V +N+G EA E A +
Sbjct: 95 PKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLF--NYHKVLPMNTGVEAGETACKL 152
Query: 175 ARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFG---- 230
AR + I A I A N W + I +P Y G FG
Sbjct: 153 ARKWGYTVKGIQKYKA-------KIVFAAGNFWGRTL--SAISSSTDPTSYDG-FGPFMP 202
Query: 231 -------SDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRK 283
+D + LQD VA F+ E IQG G V PGYL V ++ +
Sbjct: 203 GFDIIPYNDLPALERALQDP-------NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTR 255
Query: 284 AGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGL-PLGAVVTTPEIANVM 342
+ IADE+QTG RTG + + + V PDIV + K + GL P+ AV+ +I +
Sbjct: 256 HQVLFIADEIQTGLARTG-RWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTI 314
Query: 343 AQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVR 402
+T+GGNP+ +A L V+++E + +G L L L D++ VR
Sbjct: 315 KPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPS--DVVTAVR 372
Query: 403 GRGLM 407
G+GL+
Sbjct: 373 GKGLL 377
>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From
Sulfolobus Tokodaii Strain7
Length = 419
Score = 135 bits (339), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 110/351 (31%), Positives = 174/351 (49%), Gaps = 31/351 (8%)
Query: 79 PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGH-CHPDVLNAIFEQSKLLQHATTIYLH 137
PL I G+ +++D +G +YLD +GI + G HP+V+ EQ + L HA +
Sbjct: 25 PLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAANDFY 84
Query: 138 HAIA-DFAEALASKMPGNL-KVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGS 195
+ + A+ L + PGN K V+F NSGTEA E ++ + + +TG +IA +HG +
Sbjct: 85 NIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVK-NTGRKYIIAFLGGFHGRT 143
Query: 196 SGTIGLTALNTWKY----PIPQGEIHHVVNPDPYHGSFGSD--------AARYAQDLQDH 243
G+I LTA + P G IH V P+PY + + R + ++D+
Sbjct: 144 FGSISLTASKAVQRSIVGPFMPGVIH-VPYPNPYRNPWHINGYENPSELVNRVIEFIEDY 202
Query: 244 I--DFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTG 301
I + +VAG E IQG GG V + + + +K G + + DEVQ G GRTG
Sbjct: 203 IFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTG 262
Query: 302 SHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAG 360
+ E +PD++T+AK +G G +P+GA + ++ + NTFGGN + A
Sbjct: 263 KLF-AIENFNTVPDVITLAKALGGGIMPIGATIFRKDLD--FKPGMHSNTFGGNALACAI 319
Query: 361 GLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGME 411
G V+ ++ + H ++G L+ L + DVRG GL G+E
Sbjct: 320 GSKVIDIV--KDLLPHVNEIGKIFAEELQGLAD------DVRGIGLAWGLE 362
>pdb|1OAT|A Chain A, Ornithine Aminotransferase
pdb|1OAT|B Chain B, Ornithine Aminotransferase
pdb|1OAT|C Chain C, Ornithine Aminotransferase
pdb|2OAT|A Chain A, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|B Chain B, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|C Chain C, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
Length = 439
Score = 134 bits (338), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 106/365 (29%), Positives = 168/365 (46%), Gaps = 37/365 (10%)
Query: 55 PSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCH 114
P++D +F++ ++ +Y+ P+ + GK YL+D GR+Y D + V+ GHCH
Sbjct: 38 PTSDDIFEREYKY---GAHNYHPLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCH 94
Query: 115 PDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLM 174
P ++NA+ Q L + + ++ + ++ E + N V +N+G EA E A +
Sbjct: 95 PKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLF--NYHKVLPMNTGVEAGETACKL 152
Query: 175 ARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFG---- 230
AR + I A I A N W + I +P Y G FG
Sbjct: 153 ARKWGYTVKGIQKYKA-------KIVFAAGNFWGRTL--SAISSSTDPTSYDG-FGPFMP 202
Query: 231 -------SDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRK 283
+D + LQD VA F+ E IQG G V PGYL V ++ +
Sbjct: 203 GFDIIPYNDLPALERALQDP-------NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTR 255
Query: 284 AGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGL-PLGAVVTTPEIANVM 342
+ IADE+QTG RTG + + + V PDIV + K + GL P+ AV+ +I +
Sbjct: 256 HQVLFIADEIQTGLARTG-RWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTI 314
Query: 343 AQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVR 402
+T+GGNP+ +A L V+++E + +G L L L D++ VR
Sbjct: 315 KPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPS--DVVTAVR 372
Query: 403 GRGLM 407
G+GL+
Sbjct: 373 GKGLL 377
>pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6R|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6T|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6U|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A6U|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A72|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4AH3|A Chain A, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|B Chain B, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|C Chain C, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|D Chain D, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
Length = 459
Score = 134 bits (338), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 115/363 (31%), Positives = 174/363 (47%), Gaps = 32/363 (8%)
Query: 82 IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIY--LHHA 139
+ G+ YL+D G + +D AG+ V+ G+ D A Q + L T + H A
Sbjct: 36 MTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHPA 95
Query: 140 IADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG------MIALRNAYHG 193
+ + + LA P V++ NSG+E+ + + M R G +I N YHG
Sbjct: 96 VVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHG 155
Query: 194 GSSGTIGLTALNTWKYPIPQGEI-----HHVVNPDPY-HG------SFGSDAARYAQDLQ 241
TIG +L KY QG++ H+ P Y HG FG AAR+ L+
Sbjct: 156 S---TIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARW---LE 209
Query: 242 DHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTG 301
+ I + KVA F+ E IQG GG + Y + I RK + +ADEV GFGRTG
Sbjct: 210 EKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTG 269
Query: 302 SHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQFN---TFGGNPVC 357
++G + G PD+ T AKG+ +G LP+GAV +A + FN T+ G+PVC
Sbjct: 270 E-WFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVC 328
Query: 358 SAGGLAVLRVI-DKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDR 416
+A A + + D+ Q D+G ++ R R R + + DVRG G++ LV ++
Sbjct: 329 AAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNK 388
Query: 417 KEK 419
++
Sbjct: 389 AKR 391
>pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|B Chain B, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|C Chain C, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|1GBN|A Chain A, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|B Chain B, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|C Chain C, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
Length = 402
Score = 134 bits (338), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 106/365 (29%), Positives = 168/365 (46%), Gaps = 37/365 (10%)
Query: 55 PSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCH 114
P++D +F++ ++ +Y+ P+ + GK YL+D GR+Y D + V+ GHCH
Sbjct: 1 PTSDDIFEREYKY---GAHNYHPLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCH 57
Query: 115 PDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLM 174
P ++NA+ Q L + + ++ + ++ E + N V +N+G EA E A +
Sbjct: 58 PKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLF--NYHKVLPMNTGVEAGETACKL 115
Query: 175 ARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFG---- 230
AR + I A I A N W + I +P Y G FG
Sbjct: 116 ARKWGYTVKGIQKYKA-------KIVFAAGNFWGRTL--SAISSSTDPTSYDG-FGPFMP 165
Query: 231 -------SDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRK 283
+D + LQD VA F+ E IQG G V PGYL V ++ +
Sbjct: 166 GFDIIPYNDLPALERALQDP-------NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTR 218
Query: 284 AGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGL-PLGAVVTTPEIANVM 342
+ IADE+QTG RTG + + + V PDIV + K + GL P+ AV+ +I +
Sbjct: 219 HQVLFIADEIQTGLARTG-RWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTI 277
Query: 343 AQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVR 402
+T+GGNP+ +A L V+++E + +G L L L D++ VR
Sbjct: 278 KPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPS--DVVTAVR 335
Query: 403 GRGLM 407
G+GL+
Sbjct: 336 GKGLL 340
>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|B Chain B, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|C Chain C, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|D Chain D, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3NTJ|A Chain A, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|B Chain B, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|C Chain C, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|D Chain D, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
Length = 422
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 104/408 (25%), Positives = 181/408 (44%), Gaps = 51/408 (12%)
Query: 74 HYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT 133
+Y P+ + GK +++D RRY D + +V+ GHCHPD+LNA+ Q+K L +
Sbjct: 24 NYDPIPVVLKRGKGVFVYDIEDRRYYDFLSAYSSVNQGHCHPDILNAMINQAKKLTICSR 83
Query: 134 IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMAR--------LSTGNLGMI 185
+ ++ E + + G KV+ +N+G EA+E A + R + + +I
Sbjct: 84 AFFSDSLG-VCERYLTNLFGYDKVL-MMNTGAEASETAYKLCRKWGYEVKKIPENSAKII 141
Query: 186 ALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSF----GSDAARYAQDLQ 241
N + G + G + + K N P+ +F D ++LQ
Sbjct: 142 VCNNNFSGRTLGCVSASTDKKCKN-----------NFGPFVPNFLKVPYDDLEALEKELQ 190
Query: 242 DHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTG 301
D V FI E +QG G + + Y V + +K + +ADEVQTG GRTG
Sbjct: 191 D-------PNVCAFIVEPVQGEAGVIVPSDSYFPGVASLCKKYNVLFVADEVQTGLGRTG 243
Query: 302 ----SHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQFNTFGGNPV 356
+H++ GV PD++ + K + G P+ A++ ++ V+ +T+GGNP+
Sbjct: 244 KLLCTHHY-----GVKPDVILLGKALSGGHYPISAILANDDVMLVLKPGEHGSTYGGNPL 298
Query: 357 CSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDR 416
+A + L+V+ E+ + +G+ L L+ + ++ +VRG+GL+ +E D
Sbjct: 299 AAAICVEALKVLINEKLCENADKLGAPFLQNLKEQLKDSKVVREVRGKGLLCAIEFKNDL 358
Query: 417 KEKTPAKAETAVLFEKLREXXXXXXXXXXXXXXFRIKPPMCFTKDDAD 464
V L+ R+ PP+C TK+ D
Sbjct: 359 ---------VNVWDICLKFKENGLITRSVHDKTVRLTPPLCITKEQLD 397
>pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
pdb|3RUY|B Chain B, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
Length = 392
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 103/414 (24%), Positives = 189/414 (45%), Gaps = 47/414 (11%)
Query: 74 HYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT 133
+Y+ P+ I + + ++ D G RY+D + V+ GH HP ++NA+ +Q+ + +
Sbjct: 14 NYHPLPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSR 73
Query: 134 IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMAR--------LSTGNLGMI 185
+ + + E +A N ++V +N+G EA E A+ AR + +I
Sbjct: 74 AFHSDQLGPWYEKVAKLT--NKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEII 131
Query: 186 ALRNAYHGGSSGTIGLTALNTWKY---PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQD 242
+ +HG + G + +++ +K P+ G I V+ PY DL+
Sbjct: 132 VCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGII--VI---PYG------------DLE- 173
Query: 243 HIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS 302
+ + A FI E IQG G G+LK ++ +K + +ADE+QTG GRTG
Sbjct: 174 ALKAAITPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGK 233
Query: 303 HYWGFETQGVIPDIVTMAKGIGNGL-PLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGG 361
+ + V PD+ + +G G+ P+ +I V +TFGGNP+ A
Sbjct: 234 VF-ACDWDNVTPDMYILGXALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVS 292
Query: 362 LAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTP 421
+A L V+++E+ +G L+G+L+ + + +I +VRG+GL +G+EL +
Sbjct: 293 IAALEVLEEEKLTERSLQLGEKLVGQLKEID--NPMITEVRGKGLFIGIELNEPARPYCE 350
Query: 422 AKAETAVLFEKLREXXXXXXXXXXXXXXFRIKPPMCFTKDDADFLVDALDYSMS 475
+L ++ E RI PP+ +++D ++ + +S
Sbjct: 351 QLKAAGLLCKETHE------------NVIRIAPPLVISEEDLEWAFQKIKAVLS 392
>pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|B Chain B, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|C Chain C, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|D Chain D, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
Length = 430
Score = 128 bits (322), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 106/350 (30%), Positives = 168/350 (48%), Gaps = 23/350 (6%)
Query: 71 SIFHYYQKPLNI-VEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ 129
++F+ KP + V G+ +L+D+ GRRYLD +G + + GH +V + Q+ L
Sbjct: 3 NVFYRSSKPYPVAVRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLP 62
Query: 130 HA-TTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARL------STGNL 182
+ + + ++A LA + + V+ G+EA E A+ +AR G
Sbjct: 63 FVHGSQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRF 122
Query: 183 GMIALRNAYHGGSSGTI---GLTALNTWKYPIPQGEIH-HVVNPDPYHGSFGSDAARYAQ 238
+I +YHG S G++ G+ A P+ + E + PDP + A A+
Sbjct: 123 KVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPAR-----NGAEDAE 177
Query: 239 DLQDHIDFGTSGKVAGFIAETIQGVG-GAVELAPGYLKLVYDIVRKAGGVCIADEVQTGF 297
L+ ++ VA F+AE + G A+ APGY + V DI +AG + IADEV +G
Sbjct: 178 GLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGM 237
Query: 298 GRTGSHYWGFETQGVIPDIVTMAKGIGNGL-PLGAVVTTPEI-ANVMAQKIQFN---TFG 352
GR GS GV PDI + KG+ G PL ++ P++ VM F T+
Sbjct: 238 GRCGSPLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYA 297
Query: 353 GNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVR 402
G+PV A GL+VL ++++E + G+ LL L+ LQ R + VR
Sbjct: 298 GHPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQVR 347
>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
pdb|3I5T|B Chain B, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
Length = 476
Score = 124 bits (312), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 165/347 (47%), Gaps = 21/347 (6%)
Query: 89 YLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHA-IADFAEAL 147
Y+ E+GRR +D AG+ G+ ++++A+ Q+ +L +A+ Y+ + A AE +
Sbjct: 47 YVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPWYMATSPAARLAEKI 106
Query: 148 ASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG------MIALRNAYHGGSSGTIGL 201
A+ PG+L ++F G+ A + A+ + LG +I + YHG ++ T
Sbjct: 107 ATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAAC 166
Query: 202 TA-LNTW-KYPIPQGEIHHVVNPDPYHGSFGSDAA---RYAQDLQDHIDFGTSGKVAGFI 256
T W + I Q I + +P+P H S A Q+ +D I+ +A F+
Sbjct: 167 TGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFL 226
Query: 257 AETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDI 316
AE I GG + GY I K + I+DEV TGFGR G + + GV+PDI
Sbjct: 227 AEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDI 286
Query: 317 VTMAKGIGNG-LPLGAVVTT----PEIANVMAQKIQFN---TFGGNPVCSAGGLAVLRVI 368
+T AKG+ +G +PLG + + I+ A+ F T+ PV A LA + ++
Sbjct: 287 ITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELM 346
Query: 369 DKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTD 415
++E ++ + L +L++ + + R GL+ ++ + D
Sbjct: 347 EREGIVDQAREMADYFAAALASLRDLPG-VAETRSVGLVGCVQCLLD 392
>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
pdb|3NX3|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
Length = 395
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 103/343 (30%), Positives = 160/343 (46%), Gaps = 26/343 (7%)
Query: 78 KPLNIVEGKMQ--YLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIY 135
K +IV K Q YLFD+ ++YLD +GI + G+ H I Q L H + +Y
Sbjct: 16 KRFDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNLY 75
Query: 136 LHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGM-----IALRNA 190
+ IA A A L+ V+F NSGTE+ E A AR N G+ IA +++
Sbjct: 76 YNENIA--AAAKNLAKASALERVFFTNSGTESIEGAXKTARKYAFNKGVKGGQFIAFKHS 133
Query: 191 YHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG 250
+HG + G + LTA ++ P P G A+Y D+ ++ +
Sbjct: 134 FHGRTLGALSLTANEKYQKPFK-----------PLIS--GVKFAKY-NDISS-VEKLVNE 178
Query: 251 KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ 310
K I E++QG GG + K + + + + IADE+Q G GR+G ++ +E
Sbjct: 179 KTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGXGRSGK-FFAYEHA 237
Query: 311 GVIPDIVTMAKGIGNGLPLGAVVTTPEIA-NVMAQKIQFNTFGGNPVCSAGGLAVLRVID 369
++PDI T AK +G GL +GA V ++A N + +T+GGNP+ AG AV +
Sbjct: 238 QILPDIXTSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFK 297
Query: 370 KERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMEL 412
+E+ + + +L L L D +G G G+ L
Sbjct: 298 EEKILENVNKLTPYLEQSLDELINEFDFCKKRKGLGFXQGLSL 340
>pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
pdb|3DU4|B Chain B, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
Length = 448
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 112/414 (27%), Positives = 182/414 (43%), Gaps = 49/414 (11%)
Query: 58 DQVFQKRKQFLGP--SIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHP 115
D + + +K P + Y + PL I G + D NG+ Y D F+ + GH
Sbjct: 4 DLIEKSKKHLWLPFTQMKDYDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKK 63
Query: 116 DVLNAIFEQSKLLQHATTIYLHHAIA-DFAEALASKMPGNLKVVYFVNSGTEANELAMLM 174
++ +AI +Q + H+T + + + A AE L P L V++ +SG EA E+A+ M
Sbjct: 64 ELDDAIKKQLGKIAHSTLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKM 123
Query: 175 ARLSTGNLG------MIALRNAYHGGSSGTIGLTALN------------TWKYPIPQGEI 216
A N+G IA++N YHG + G + + ++ ++K PIP
Sbjct: 124 AFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYR 183
Query: 217 HHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKL 276
+PD + A+ ++ + I A I +QG G + + GYL
Sbjct: 184 SESGDPDECRDQXLRELAQLLEEHHEEI-------AALSIESMVQGASGMIVMPEGYLAG 236
Query: 277 VYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTT 335
V ++ + I DEV TGFGRTG + E + V PD++ KGI G LP+ T
Sbjct: 237 VRELCTTYDVLMIVDEVATGFGRTGKMF-ACEHENVQPDLMAAGKGITGGYLPIAVTFAT 295
Query: 336 PEIANVMAQKIQF-------NTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGS--HLLG 386
+I + +++ GN + A L L + + E A+ H L
Sbjct: 296 EDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFL- 354
Query: 387 RLRTLQERHDI--IGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFE---KLRE 435
LQ+ H + +GD+R G M G ELV ++ K P A+ + ++ K+RE
Sbjct: 355 ----LQDLHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRE 404
>pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DOD|B Chain B, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DRD|A Chain A, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
pdb|3DRD|B Chain B, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
Length = 448
Score = 122 bits (305), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 112/414 (27%), Positives = 182/414 (43%), Gaps = 49/414 (11%)
Query: 58 DQVFQKRKQFLGP--SIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHP 115
D + + +K P + Y + PL I G + D NG+ Y D F+ + GH
Sbjct: 4 DLIEKSKKHLWLPFTQMKDYDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKK 63
Query: 116 DVLNAIFEQSKLLQHATTIYLHHAIA-DFAEALASKMPGNLKVVYFVNSGTEANELAMLM 174
++ +AI +Q + H+T + + + A AE L P L V++ +SG EA E+A+ M
Sbjct: 64 ELDDAIKKQLGKIAHSTLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKM 123
Query: 175 ARLSTGNLG------MIALRNAYHGGSSGTIGLTALN------------TWKYPIPQGEI 216
A N+G IA++N YHG + G + + ++ ++K PIP
Sbjct: 124 AFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYR 183
Query: 217 HHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKL 276
+PD + A+ ++ + I A I +QG G + + GYL
Sbjct: 184 SESGDPDECRDQCLRELAQLLEEHHEEI-------AALSIESMVQGASGMIVMPEGYLAG 236
Query: 277 VYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTT 335
V ++ + I DEV TGFGRTG + E + V PD++ KGI G LP+ T
Sbjct: 237 VRELCTTYDVLMIVDEVATGFGRTGKMF-ACEHENVQPDLMAAGKGITGGYLPIAVTFAT 295
Query: 336 PEIANVMAQKIQF-------NTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGS--HLLG 386
+I + +++ GN + A L L + + E A+ H L
Sbjct: 296 EDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFL- 354
Query: 387 RLRTLQERHDI--IGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFE---KLRE 435
LQ+ H + +GD+R G M G ELV ++ K P A+ + ++ K+RE
Sbjct: 355 ----LQDLHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRE 404
>pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate
Aminotransferase
Length = 449
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/363 (26%), Positives = 168/363 (46%), Gaps = 26/363 (7%)
Query: 74 HYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT 133
++ + P IV + +L D+ GR+ D+ +G+ T GH ++ A+ +Q L ++
Sbjct: 28 NFLRDPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPG 87
Query: 134 IYLHHAIA-DFAEALASKMPGNLKVVYFVNSGTEANELAMLMARL------STGNLGMIA 186
H ++ AE + PGNL V+F +SG+E A+ M R MI
Sbjct: 88 FQYGHPLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIG 147
Query: 187 LRNAYHGGSSGTIGLTALNTWK--YPIPQGEIHHVVNPDPYHGSFGSDAAR-----YAQD 239
YHG + L +N + + P ++ H+ + ++ + A +
Sbjct: 148 RARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADE 207
Query: 240 LQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGR 299
L I+ + +A E + G G + GYLK +I + + + DEV TGFGR
Sbjct: 208 LLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGR 267
Query: 300 TGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQK------IQF---N 349
TGS + G ++ GV PD++ +AK + NG +P+GAV+ + EI + ++F
Sbjct: 268 TGSMF-GADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGY 326
Query: 350 TFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVG 409
T+ +PV A GLA L ++ KE A+V H L ++ ++I D+R GL
Sbjct: 327 TYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKGAKNVI-DIRNFGLAGA 385
Query: 410 MEL 412
+++
Sbjct: 386 IQI 388
>pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
pdb|3L44|B Chain B, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
Length = 434
Score = 108 bits (269), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 102/332 (30%), Positives = 145/332 (43%), Gaps = 33/332 (9%)
Query: 79 PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIF---EQSKLLQHATTIY 135
P+ GK Y +D +G +Y+D A + GH HP + AI E L T +
Sbjct: 38 PIAXERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITTAAENGVLYGTPTALE 97
Query: 136 LHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGS 195
+ FA+ L P L V FVNSGTEA + +AR TG + YHG S
Sbjct: 98 VK-----FAKXLKEAXPA-LDKVRFVNSGTEAVXTTIRVARAYTGRTKIXKFAGCYHGHS 151
Query: 196 SGTI-----GLTALNTWKYP-IPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTS 249
+ G + L T +PQ V+ P++ + + A D H
Sbjct: 152 DLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITV-PFNNV---ETLKEALDKWGH------ 201
Query: 250 GKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFET 309
+VA + E I G G VE PG+L+ V ++V +AG + I DEV T F Y G +
Sbjct: 202 -EVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFX---YGGAQD 257
Query: 310 -QGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMA---QKIQFNTFGGNPVCSAGGLAVL 365
GV PD+ + IG GLP+GA EI +A Q T GNP A G+A L
Sbjct: 258 LLGVTPDLTALGXVIGGGLPIGAYGGKKEIXEQVAPLGPAYQAGTXAGNPASXASGIACL 317
Query: 366 RVIDKERRQAHCADVGSHLLGRLRTLQERHDI 397
V+ +E ++G+ L + +H+I
Sbjct: 318 EVLQQEGLYEKLDELGATLEKGILEQAAKHNI 349
>pdb|1DTY|A Chain A, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor.
pdb|1DTY|B Chain B, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor
Length = 429
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 155/346 (44%), Gaps = 33/346 (9%)
Query: 82 IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIA 141
+V + L +GRR +D + G+ HP + A+ Q + H + HA A
Sbjct: 29 VVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGEITHAPA 88
Query: 142 -DFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG-----MIALRNAYHGGS 195
+ L + P L+ V+ +SG+ A E+AM MA G + RN YHG +
Sbjct: 89 IELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWDAKGEARDRFLTFRNGYHGDT 148
Query: 196 SGTIGL-----TALNTWKYPIPQGEIHHVVNPDPYHGSFGS----DAARYAQDLQDHIDF 246
G + + + + WK +P+ ++ P P G D +A+ + H
Sbjct: 149 FGAMSVCDPDNSMHSLWKGYLPE----NLFAPAPQSRMDGEWDERDMVGFARLMAAH--- 201
Query: 247 GTSGKVAGFIAETI-QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYW 305
++A I E I QG GG P +LK + I + G + IADE+ TGFGRTG +
Sbjct: 202 --RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLF- 258
Query: 306 GFETQGVIPDIVTMAKGI-GNGLPLGAVVTTPEIANVMAQK-----IQFNTFGGNPVCSA 359
E + PDI+ + K + G + L A +TT E+A ++ + TF GNP+ A
Sbjct: 259 ACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISDGEAGCFMHGPTFMGNPLACA 318
Query: 360 GGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRG 405
A L +++ Q AD+ L +L ++ +++ DVR G
Sbjct: 319 AANASLAILESGDWQQQVADIEVQLREQLAPARDA-EMVADVRVLG 363
>pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1MGV|B Chain B, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 155/346 (44%), Gaps = 33/346 (9%)
Query: 82 IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIA 141
+V + L +GRR +D + G+ HP + A+ Q + H + HA A
Sbjct: 29 VVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPA 88
Query: 142 -DFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG-----MIALRNAYHGGS 195
+ L + P L+ V+ +SG+ A E+AM MA G + RN YHG +
Sbjct: 89 IELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDT 148
Query: 196 SGTIGL-----TALNTWKYPIPQGEIHHVVNPDPYHGSFGS----DAARYAQDLQDHIDF 246
G + + + + WK +P+ ++ P P G D +A+ + H
Sbjct: 149 FGAMSVCDPDNSMHSLWKGYLPE----NLFAPAPQSRMDGEWDERDMVGFARLMAAH--- 201
Query: 247 GTSGKVAGFIAETI-QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYW 305
++A I E I QG GG P +LK + I + G + IADE+ TGFGRTG +
Sbjct: 202 --RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLF- 258
Query: 306 GFETQGVIPDIVTMAKGI-GNGLPLGAVVTTPEIANVMAQK-----IQFNTFGGNPVCSA 359
E + PDI+ + K + G + L A +TT E+A ++ + TF GNP+ A
Sbjct: 259 ACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACA 318
Query: 360 GGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRG 405
A L +++ Q AD+ L +L ++ +++ DVR G
Sbjct: 319 AANASLAILESGDWQQQVADIEVQLREQLAPARDA-EMVADVRVLG 363
>pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ3|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ5|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1QJ5|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1MLY|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLY|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLZ|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin.
pdb|1MLZ|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin
Length = 429
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 155/346 (44%), Gaps = 33/346 (9%)
Query: 82 IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIA 141
+V + L +GRR +D + G+ HP + A+ Q + H + HA A
Sbjct: 29 VVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPA 88
Query: 142 -DFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG-----MIALRNAYHGGS 195
+ L + P L+ V+ +SG+ A E+AM MA G + RN YHG +
Sbjct: 89 IELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDT 148
Query: 196 SGTIGL-----TALNTWKYPIPQGEIHHVVNPDPYHGSFGS----DAARYAQDLQDHIDF 246
G + + + + WK +P+ ++ P P G D +A+ + H
Sbjct: 149 FGAMSVCDPDNSMHSLWKGYLPE----NLFAPAPQSRMDGEWDERDMVGFARLMAAH--- 201
Query: 247 GTSGKVAGFIAETI-QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYW 305
++A I E I QG GG P +LK + I + G + IADE+ TGFGRTG +
Sbjct: 202 --RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLF- 258
Query: 306 GFETQGVIPDIVTMAKGI-GNGLPLGAVVTTPEIANVMAQK-----IQFNTFGGNPVCSA 359
E + PDI+ + K + G + L A +TT E+A ++ + TF GNP+ A
Sbjct: 259 ACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACA 318
Query: 360 GGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRG 405
A L +++ Q AD+ L +L ++ +++ DVR G
Sbjct: 319 AANASLAILESGDWQQQVADIEVQLREQLAPARDA-EMVADVRVLG 363
>pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S08|B Chain B, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 98.2 bits (243), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 154/346 (44%), Gaps = 33/346 (9%)
Query: 82 IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIA 141
+V + L +GRR +D + G+ HP + A+ Q + H + HA A
Sbjct: 29 VVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPA 88
Query: 142 -DFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG-----MIALRNAYHGGS 195
+ L + P L+ V+ +SG+ A E+AM MA G + RN YHG +
Sbjct: 89 IELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGNT 148
Query: 196 SGTIGL-----TALNTWKYPIPQGEIHHVVNPDPYHGSFGS----DAARYAQDLQDHIDF 246
G + + + + WK +P+ ++ P P G D +A+ + H
Sbjct: 149 FGAMSVCDPDNSMHSLWKGYLPE----NLFAPAPQSRMDGEWDERDMVGFARLMAAH--- 201
Query: 247 GTSGKVAGFIAETI-QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYW 305
++A I E I QG GG P +LK + I + G + IADE+ TGFGRTG +
Sbjct: 202 --RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLF- 258
Query: 306 GFETQGVIPDIVTMAKGI-GNGLPLGAVVTTPEIANVMAQK-----IQFNTFGGNPVCSA 359
E + PDI+ + + G + L A +TT E+A ++ + TF GNP+ A
Sbjct: 259 ACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACA 318
Query: 360 GGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRG 405
A L +++ Q AD+ L +L ++ +++ DVR G
Sbjct: 319 AANASLAILESGDWQQQVADIEVQLREQLAPARDA-EMVADVRVLG 363
>pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S0A|B Chain B, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 154/346 (44%), Gaps = 33/346 (9%)
Query: 82 IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIA 141
+V + L +GRR +D + G+ HP + A+ Q + H + HA A
Sbjct: 29 VVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPA 88
Query: 142 -DFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG-----MIALRNAYHGGS 195
+ L + P L+ V+ +SG+ A E+AM MA G + RN YHG +
Sbjct: 89 IELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDT 148
Query: 196 SGTIGL-----TALNTWKYPIPQGEIHHVVNPDPYHGSFGS----DAARYAQDLQDHIDF 246
G + + + + WK +P+ ++ P P G D +A+ + H
Sbjct: 149 FGAMSVCDPDNSMHSLWKGYLPE----NLFAPAPQSRMDGEWDERDMVGFARLMAAH--- 201
Query: 247 GTSGKVAGFIAETI-QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYW 305
++A I E I QG GG P +LK + I + G + IADE+ TGFGRTG +
Sbjct: 202 --RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLF- 258
Query: 306 GFETQGVIPDIVTMAKGI-GNGLPLGAVVTTPEIANVMAQK-----IQFNTFGGNPVCSA 359
E + PDI+ + + G + L A +TT E+A ++ + TF GNP+ A
Sbjct: 259 ACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACA 318
Query: 360 GGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRG 405
A L +++ Q AD+ L +L ++ +++ DVR G
Sbjct: 319 AANASLAILESGDWQQQVADIEVQLREQLAPARDA-EMVADVRVLG 363
>pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Aeropyrum Pernix
pdb|2ZSL|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix
pdb|2ZSM|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|C Chain C, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
Length = 434
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 90/337 (26%), Positives = 149/337 (44%), Gaps = 38/337 (11%)
Query: 53 TGPSADQVFQKRKQFL-----GPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVT 107
+G + +F++ K+ P P + G+ YL+ +G R +D
Sbjct: 8 SGEKSRMLFERTKELFPGGVNSPVRAAVKPYPFYVKRGEGAYLYTVDGARIVDLVLAYGP 67
Query: 108 VSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLK---VVYFVNSG 164
+ GH HP VL A+ E +L+ A + LA K+ G +K ++ FVNSG
Sbjct: 68 LILGHKHPRVLEAVEEA------LARGWLYGAPGEAEVLLAEKILGYVKRGGMIRFVNSG 121
Query: 165 TEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQG-----EIHHV 219
TEA A+ +AR TG ++ YHG + Y +P + +
Sbjct: 122 TEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARL 181
Query: 220 VNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYD 279
PY+ D + ++ D ++AG I E + G + +L +
Sbjct: 182 TLVTPYN-----DVEALERVFAEYGD-----RIAGVIVEPVIANAGVIPPRREFLAALQR 231
Query: 280 IVRKAGGVCIADEVQTGF--GRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPE 337
+ R++G + I DEV TGF G G+ + F +G DI+ + K IG G P+GAV + E
Sbjct: 232 LSRESGALLILDEVVTGFRLGLEGAQGY-FNIEG---DIIVLGKIIGGGFPVGAVAGSRE 287
Query: 338 IANVMA-QKIQFN--TFGGNPVCSAGGLAVLRVIDKE 371
+ +++ Q FN TF +P+ A GLA L+ +++E
Sbjct: 288 VMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEEE 324
>pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1S07|B Chain B, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 154/346 (44%), Gaps = 33/346 (9%)
Query: 82 IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIA 141
+V + L +GRR +D + G+ HP + A+ Q + H + HA A
Sbjct: 29 VVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPA 88
Query: 142 -DFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG-----MIALRNAYHGGS 195
+ L + P L+ V+ +SG+ A E+AM MA G + RN YHG +
Sbjct: 89 IELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDT 148
Query: 196 SGTIGL-----TALNTWKYPIPQGEIHHVVNPDPYHGSFGS----DAARYAQDLQDHIDF 246
G + + + + WK +P+ ++ P P G D +A+ + H
Sbjct: 149 FGAMSVCDPDNSMHSLWKGYLPE----NLFAPAPQSRMDGEWDERDMVGFARLMAAH--- 201
Query: 247 GTSGKVAGFIAETI-QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYW 305
++A I E I QG GG P +LK + I + G + IADE+ TGFG TG +
Sbjct: 202 --RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGATGKLF- 258
Query: 306 GFETQGVIPDIVTMAKGI-GNGLPLGAVVTTPEIANVMAQK-----IQFNTFGGNPVCSA 359
E + PDI+ + K + G + L A +TT E+A ++ + TF GNP+ A
Sbjct: 259 ACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACA 318
Query: 360 GGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRG 405
A L +++ Q AD+ L +L ++ +++ DVR G
Sbjct: 319 AANASLAILESGDWQQQVADIEVQLREQLAPARDA-EMVADVRVLG 363
>pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S06|B Chain B, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 94/346 (27%), Positives = 154/346 (44%), Gaps = 33/346 (9%)
Query: 82 IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIA 141
+V + L +GRR +D + G+ HP + A+ Q + H + HA A
Sbjct: 29 VVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPA 88
Query: 142 -DFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG-----MIALRNAYHGGS 195
+ L + P L+ V+ +SG+ A E+AM MA G + RN YHG +
Sbjct: 89 IELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDT 148
Query: 196 SGTIGL-----TALNTWKYPIPQGEIHHVVNPDPYHGSFGS----DAARYAQDLQDHIDF 246
G + + + + WK +P+ ++ P P G D +A+ + H
Sbjct: 149 FGAMSVCDPDNSMHSLWKGYLPE----NLFAPAPQSRMDGEWDERDMVGFARLMAAH--- 201
Query: 247 GTSGKVAGFIAETI-QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYW 305
++A I E I QG GG P +LK + I + G + IADE+ TGFG+TG +
Sbjct: 202 --RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGKTGKLF- 258
Query: 306 GFETQGVIPDIVTMAKGI-GNGLPLGAVVTTPEIANVMAQK-----IQFNTFGGNPVCSA 359
E + PDI+ + + G + L A +TT E+A ++ + TF GNP+ A
Sbjct: 259 ACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACA 318
Query: 360 GGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRG 405
A L +++ Q AD+ L +L ++ +++ DVR G
Sbjct: 319 AANASLAILESGDWQQQVADIEVQLREQLAPARDA-EMVADVRVLG 363
>pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S09|B Chain B, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 94/346 (27%), Positives = 154/346 (44%), Gaps = 33/346 (9%)
Query: 82 IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIA 141
+V + L +GRR +D + G+ HP + A+ Q + H + HA A
Sbjct: 29 VVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPA 88
Query: 142 -DFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG-----MIALRNAYHGGS 195
+ L + P L+ V+ +SG+ A E+AM MA G + RN +HG +
Sbjct: 89 IELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGFHGDT 148
Query: 196 SGTIGL-----TALNTWKYPIPQGEIHHVVNPDPYHGSFGS----DAARYAQDLQDHIDF 246
G + + + + WK +P+ ++ P P G D +A+ + H
Sbjct: 149 FGAMSVCDPDNSMHSLWKGYLPE----NLFAPAPQSRMDGEWDERDMVGFARLMAAH--- 201
Query: 247 GTSGKVAGFIAETI-QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYW 305
++A I E I QG GG P +LK + I + G + IADE+ TGFGRTG +
Sbjct: 202 --RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLF- 258
Query: 306 GFETQGVIPDIVTMAKGI-GNGLPLGAVVTTPEIANVMAQK-----IQFNTFGGNPVCSA 359
E + PDI+ + + G + L A +TT E+A ++ + TF GNP+ A
Sbjct: 259 ACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACA 318
Query: 360 GGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRG 405
A L +++ Q AD+ L +L ++ +++ DVR G
Sbjct: 319 AANASLAILESGDWQQQVADIEVQLREQLAPARDA-EMVADVRVLG 363
>pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|2GSA|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|4GSA|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|4GSA|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|3GSB|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
pdb|3GSB|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
Length = 432
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 141/302 (46%), Gaps = 29/302 (9%)
Query: 78 KPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLH 137
+P+ K Y +D +G RY+D CGH HP+V+ A+ ++ T+
Sbjct: 39 QPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEAL---KVAMEKGTSFGAP 95
Query: 138 HAIAD-FAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSS 196
A+ + AE + +P ++++V FVNSGTEA + + R TG +I YHG +
Sbjct: 96 CALENVLAEMVNDAVP-SIEMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHAD 154
Query: 197 GTI-----GLTALNTWKYP-IPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG 250
+ G+ L P +P+ + + PY+ + A +A++ G
Sbjct: 155 MFLVKAGSGVATLGLPSSPGVPKKTTANTLT-TPYN-DLEAVKALFAEN---------PG 203
Query: 251 KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ 310
++AG I E I G G + G+L+ + +I + + + DEV TGF Y G + +
Sbjct: 204 EIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIA---YGGVQEK 260
Query: 311 -GVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK---IQFNTFGGNPVCSAGGLAVLR 366
GV PD+ T+ K IG GLP+GA EI ++A Q T GNP+ G+ L
Sbjct: 261 FGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLE 320
Query: 367 VI 368
++
Sbjct: 321 LL 322
>pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam
pdb|3FQ7|B Chain B, Gabaculine Complex Of Gsam
pdb|3USF|A Chain A, Crystal Structure Of Dava-4
pdb|3USF|B Chain B, Crystal Structure Of Dava-4
Length = 427
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 141/302 (46%), Gaps = 29/302 (9%)
Query: 78 KPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLH 137
+P+ K Y +D +G RY+D CGH HP+V+ A+ ++ T+
Sbjct: 34 QPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEAL---KVAMEKGTSFGAP 90
Query: 138 HAIAD-FAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSS 196
A+ + AE + +P ++++V FVNSGTEA + + R TG +I YHG +
Sbjct: 91 CALENVLAEMVNDAVP-SIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHAD 149
Query: 197 GTI-----GLTALNTWKYP-IPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG 250
+ G+ L P +P+ + + PY+ + A +A++ G
Sbjct: 150 MFLVKAGSGVATLGLPSSPGVPKKTTANTLT-TPYN-DLEAVKALFAEN---------PG 198
Query: 251 KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ 310
++AG I E I G G + G+L+ + +I + + + DEV TGF Y G + +
Sbjct: 199 EIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIA---YGGVQEK 255
Query: 311 -GVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK---IQFNTFGGNPVCSAGGLAVLR 366
GV PD+ T+ K IG GLP+GA EI ++A Q T GNP+ G+ L
Sbjct: 256 FGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLE 315
Query: 367 VI 368
++
Sbjct: 316 LL 317
>pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOY|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HOZ|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOZ|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP1|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP1|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP2|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP2|B Chain B, Inter-Subunit Signaling In Gsam
Length = 432
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 141/302 (46%), Gaps = 29/302 (9%)
Query: 78 KPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLH 137
+P+ K Y +D +G RY+D CGH HP+V+ A+ ++ T+
Sbjct: 39 QPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEAL---KVAMEKGTSFGAP 95
Query: 138 HAIAD-FAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSS 196
A+ + AE + +P ++++V FVNSGTEA + + R TG +I YHG +
Sbjct: 96 CALENVLAEMVNDAVP-SIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHAD 154
Query: 197 GTI-----GLTALNTWKYP-IPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG 250
+ G+ L P +P+ + + PY+ + A +A++ G
Sbjct: 155 MFLVKAGSGVATLGLPSSPGVPKKTTANTLT-TPYN-DLEAVKALFAEN---------PG 203
Query: 251 KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ 310
++AG I E I G G + G+L+ + +I + + + DEV TGF Y G + +
Sbjct: 204 EIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIA---YGGVQEK 260
Query: 311 -GVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK---IQFNTFGGNPVCSAGGLAVLR 366
GV PD+ T+ K IG GLP+GA EI ++A Q T GNP+ G+ L
Sbjct: 261 FGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLE 320
Query: 367 VI 368
++
Sbjct: 321 LL 322
>pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version
pdb|3FQA|B Chain B, Gabaculien Complex Of Gabaculine Resistant Gsam Version
Length = 427
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 141/302 (46%), Gaps = 29/302 (9%)
Query: 78 KPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLH 137
+P+ K Y +D +G RY+D CGH HP+V+ A+ ++ T+
Sbjct: 34 QPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEAL---KVAMEKGTSFGAP 90
Query: 138 HAIAD-FAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSS 196
A+ + AE + +P ++++V FVNSGTEA + + R TG +I YHG +
Sbjct: 91 CALENVLAEMVNDAVP-SIEMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHAD 149
Query: 197 GTI-----GLTALNTWKYP-IPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG 250
+ G+ L P +P+ + + PY+ + A +A++ G
Sbjct: 150 MFLVKAGSGVATLGLPSSPGVPKKTTANTLT-TPYN-DLEAVKALFAEN---------PG 198
Query: 251 KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ 310
++AG I E I G G + G+L+ + +I + + + DEV TGF Y G + +
Sbjct: 199 EIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIA---YGGVQEK 255
Query: 311 -GVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK---IQFNTFGGNPVCSAGGLAVLR 366
GV PD+ T+ K IG GLP+GA EI ++A Q T GNP+ G+ L
Sbjct: 256 FGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLE 315
Query: 367 VI 368
++
Sbjct: 316 LL 317
>pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Thermus Thermophilus Hb8
Length = 424
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 100/350 (28%), Positives = 154/350 (44%), Gaps = 47/350 (13%)
Query: 79 PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHH 138
P +V G+ Y++D +G RYLD + GH HP VL + E L+ T
Sbjct: 35 PPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVLARVRET---LERGLTF---G 88
Query: 139 AIADFAEALASKMPGN---LKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHG-- 193
A + ALA K+ + +V FVNSGTEA A+ +AR TG ++ R YHG
Sbjct: 89 APSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYHGHA 148
Query: 194 ------GSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG 247
SG + L ++ P ++ V+ + D + L+ +
Sbjct: 149 DGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYN--------DPEGLREVLKRRGE-- 198
Query: 248 TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGF-----GRTGS 302
++A I E + G G + +LK +++ + G + IADEV TGF G T
Sbjct: 199 ---EIAAIIFEPVVGNAGVLVPTEDFLKALHE-AKAYGVLLIADEVMTGFRLAFGGAT-- 252
Query: 303 HYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMA---QKIQFNTFGGNPVCSA 359
E G+ PD+VT+ K +G GLP A EI +A Q T GNP+ A
Sbjct: 253 -----ELLGLKPDLVTLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMA 307
Query: 360 GGLAVLRVIDKER-RQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMV 408
GLA L ++++ A+ D+G+ L L+ + + + V G M+
Sbjct: 308 AGLATLELLEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMI 357
>pdb|3FQ8|A Chain A, M248i Mutant Of Gsam
pdb|3FQ8|B Chain B, M248i Mutant Of Gsam
Length = 427
Score = 94.7 bits (234), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 141/302 (46%), Gaps = 29/302 (9%)
Query: 78 KPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLH 137
+P+ K Y +D +G RY+D CGH HP+V+ A+ ++ T+
Sbjct: 34 QPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEAL---KVAMEKGTSFGAP 90
Query: 138 HAIAD-FAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSS 196
A+ + AE + +P ++++V FVNSGTEA + + R TG +I YHG +
Sbjct: 91 CALENVLAEMVNDAVP-SIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHAD 149
Query: 197 GTI-----GLTALNTWKYP-IPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG 250
+ G+ L P +P+ + + PY+ + A +A++ G
Sbjct: 150 MFLVKAGSGVATLGLPSSPGVPKKTTANTLT-TPYN-DLEAVKALFAEN---------PG 198
Query: 251 KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ 310
++AG I E I G G + G+L+ + +I + + + DEV TGF Y G + +
Sbjct: 199 EIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIA---YGGVQEK 255
Query: 311 -GVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK---IQFNTFGGNPVCSAGGLAVLR 366
GV PD+ T+ K IG GLP+GA EI ++A Q T GNP+ G+ L
Sbjct: 256 FGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLE 315
Query: 367 VI 368
++
Sbjct: 316 LL 317
>pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde
Aminotransferase Complexed With
Pyridoxamine-5'-Phosphate From Bacillus Subtilis
Length = 438
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 153/344 (44%), Gaps = 32/344 (9%)
Query: 79 PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHH 138
P+ + GK +FD +G Y+D + GH + V+ ++ K+ ++ T+
Sbjct: 44 PIFMERGKGSKIFDIDGNEYIDYVLSWGPLILGHTNDRVVESL---KKVAEYGTSFGAPT 100
Query: 139 AIA-DFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHG-GSS 196
+ + A+ + ++P ++++V V+SGTEA A+ +AR TG ++ YHG G S
Sbjct: 101 EVENELAKLVIDRVP-SVEIVRMVSSGTEATMSALRLARGYTGRNKILKFEGCYHGHGDS 159
Query: 197 GTI----GLTALNTWKYP-IPQGEIHHVVNPDPYHGSFGSDAARYAQDLQD-HIDFGTSG 250
I G+ L P +P+G + + PY+ DL+ + F G
Sbjct: 160 LLIKAGSGVATLGLPDSPGVPEGIAKNTITV-PYN------------DLESVKLAFQQFG 206
Query: 251 K-VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFET 309
+ +AG I E + G G V G+L+ + DI + G + I DEV TGF + G+
Sbjct: 207 EDIAGVIVEPVAGNMGVVPPQEGFLQGLRDITEQYGSLLIFDEVMTGFRVDYNCAQGY-- 264
Query: 310 QGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK---IQFNTFGGNPVCSAGGLAVLR 366
GV PD+ + K IG GLP+GA EI +A Q T GNP+ GL L+
Sbjct: 265 FGVTPDLTCLGKVIGGGLPVGAYGGKAEIMEQIAPSGPIYQAGTLSGNPLAMTAGLETLK 324
Query: 367 VIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGM 410
+ + + G L + E H I G M+G
Sbjct: 325 QLTPDSYKNFIKK-GDRLEEGISKAAEAHGIPHTFNRAGSMIGF 367
>pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|B Chain B, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|C Chain C, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|D Chain D, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
Length = 429
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 98/351 (27%), Positives = 154/351 (43%), Gaps = 44/351 (12%)
Query: 78 KPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLH 137
PL GK ++D +G Y+D + GH + V+ A+ + + T+
Sbjct: 35 NPLFXERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEAL---KAVAERGTSFGAP 91
Query: 138 HAIAD-FAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHG-GS 195
I + A+ + ++P ++++V VNSGTEA A+ +AR TG ++ YHG G
Sbjct: 92 TEIENKLAKLVIERVP-SIEIVRXVNSGTEATXSALRLARGYTGRNKILKFIGCYHGHGD 150
Query: 196 SGTI----GLTALNTWKYP-IPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG 250
S I G+ L P +P+G + + Y+ ++ +YA + FG
Sbjct: 151 SLLIKAGSGVATLGLPDSPGVPEGVAKNTITV-AYNDL---ESVKYAFE-----QFGDD- 200
Query: 251 KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFG---RTGSHYWGF 307
+A I E + G G V PG+L+ + ++ + G + I DEV TGF G Y+
Sbjct: 201 -IACVIVEPVAGNXGVVPPQPGFLEGLREVTEQNGALLIFDEVXTGFRVAYNCGQGYY-- 257
Query: 308 ETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK---IQFNTFGGNPVCSAGGLAV 364
GV PD+ + K IG GLP+GA EI +A Q T GNP+ A G
Sbjct: 258 ---GVTPDLTCLGKVIGGGLPVGAYGGKAEIXRQVAPSGPIYQAGTLSGNPLAXAAGYET 314
Query: 365 LRVIDKE-----RRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGM 410
L + E R+A + G LR E+H I + G +G+
Sbjct: 315 LVQLTPESYVEFERKAEXLEAG------LRKAAEKHGIPHHINRAGSXIGI 359
>pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
pdb|3LV2|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
Length = 462
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 92/357 (25%), Positives = 157/357 (43%), Gaps = 30/357 (8%)
Query: 99 LDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYL-HHAIADFAEALASKMPGNLKV 157
LDA + T GH HP + A+ Q +++ H L H A A+ L P L
Sbjct: 83 LDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGLDT 142
Query: 158 VYFVNSGTEANELAMLMA------RLSTGNLGMIALRNAYHGGSSGTIGLT----ALNTW 207
V+F +SG+ + E+A MA R G ++ R YHG + + + +++
Sbjct: 143 VFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSL 202
Query: 208 KYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAE-TIQGVGGA 266
+ ++ P Y ++ +A + L H +G++A + E +QG GG
Sbjct: 203 WTDVLAAQVFAPQVPRDYDPAY---SAAFEAQLAQH-----AGELAAVVVEPVVQGAGGM 254
Query: 267 VELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG 326
P YL + DI R+ + I DE+ TGFGRTG+ + + GV PDI+ + K + G
Sbjct: 255 RFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALF-AADHAGVSPDIMCVGKALTGG 313
Query: 327 -LPLGAVVTTPEIANVMAQK-----IQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADV 380
L L A + T ++A+ ++ ++ TF NP+ A +A + ++ + + ++
Sbjct: 314 YLSLAATLCTADVAHTISAGAAGALMRGPTFMANPLACAVSVASVELLLGQDWRTRITEL 373
Query: 381 GSHLLGRLRTLQERHDIIGDVRGRGLMVGMEL--VTDRKEKTPAKAETAVLFEKLRE 435
+ L L T + + DVR G + +E D TPA + V R
Sbjct: 374 AAGLTAGLDTARAL-PAVTDVRVCGAIGVIECDRPVDLAVATPAALDRGVWLRPFRN 429
>pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
pdb|3BV0|B Chain B, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
Length = 437
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 92/357 (25%), Positives = 157/357 (43%), Gaps = 30/357 (8%)
Query: 99 LDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYL-HHAIADFAEALASKMPGNLKV 157
LDA + T GH HP + A+ Q +++ H L H A A+ L P L
Sbjct: 58 LDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGLDT 117
Query: 158 VYFVNSGTEANELAMLMA------RLSTGNLGMIALRNAYHGGSSGTIGLT----ALNTW 207
V+F +SG+ + E+A MA R G ++ R YHG + + + +++
Sbjct: 118 VFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSL 177
Query: 208 KYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAE-TIQGVGGA 266
+ ++ P Y ++ +A + L H +G++A + E +QG GG
Sbjct: 178 WTDVLAAQVFAPQVPRDYDPAY---SAAFEAQLAQH-----AGELAAVVVEPVVQGAGGM 229
Query: 267 VELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG 326
P YL + DI R+ + I DE+ TGFGRTG+ + + GV PDI+ + K + G
Sbjct: 230 RFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALF-AADHAGVSPDIMCVGKALTGG 288
Query: 327 -LPLGAVVTTPEIANVMAQK-----IQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADV 380
L L A + T ++A+ ++ ++ TF NP+ A +A + ++ + + ++
Sbjct: 289 YLSLAATLCTADVAHTISAGAAGALMRGPTFMANPLACAVSVASVELLLGQDWRTRITEL 348
Query: 381 GSHLLGRLRTLQERHDIIGDVRGRGLMVGMEL--VTDRKEKTPAKAETAVLFEKLRE 435
+ L L T + + DVR G + +E D TPA + V R
Sbjct: 349 AAGLTAGLDTARAL-PAVTDVRVCGAIGVIECDRPVDLAVATPAALDRGVWLRPFRN 404
>pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From
Thermosynechococcus Elongatus
Length = 411
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/334 (25%), Positives = 149/334 (44%), Gaps = 29/334 (8%)
Query: 78 KPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLH 137
+P+ K +++D +G +Y+D GH HP+V++A+ L+ T+
Sbjct: 18 QPIVFDHVKGAHIWDVDGNQYIDYVGSWGPAIVGHAHPEVIDAL---HAALEKGTSFGAP 74
Query: 138 HAIAD-FAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSS 196
+ + AE + + +P ++++V FVNSGTEA + + R T +I YHG +
Sbjct: 75 CLLENILAEMVIAAVP-SVEMVRFVNSGTEACMAVLRLMRAYTQREKVIKFEGCYHGHAD 133
Query: 197 GTI-----GLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGK 251
+ G+ L P PY+ D ++ + + +
Sbjct: 134 MFLVKAGSGVATLGLPDSPGVPKATTAATLTAPYN-----DLEAVSRLFEQYPN-----D 183
Query: 252 VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ- 310
+AG I E + G G + G+L+ + ++ ++ G + + DEV TGF Y G + +
Sbjct: 184 IAGVILEPVVGNAGFIPPDAGFLEGLRELTKQYGALLVFDEVMTGFRIA---YGGAQEKF 240
Query: 311 GVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK---IQFNTFGGNPVCSAGGLAVLRV 367
GV PD+ T+ K IG GLP+GA EI ++A Q T GNP+ G+ L +
Sbjct: 241 GVTPDLTTLGKVIGGGLPVGAYGGRAEIMKMVAPAGPVYQAGTLSGNPLAMTAGIKTLEI 300
Query: 368 IDKERRQAHCADVGSHLL-GRLRTLQE-RHDIIG 399
+ + H + L+ G L +E H++ G
Sbjct: 301 LSRPGSYEHLDRITGKLVQGLLDAAREFGHEVCG 334
>pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFT|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
Length = 457
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 92/357 (25%), Positives = 156/357 (43%), Gaps = 30/357 (8%)
Query: 99 LDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYL-HHAIADFAEALASKMPGNLKV 157
LDA + T GH HP + A+ Q +++ H L H A A+ L P L
Sbjct: 78 LDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGLDT 137
Query: 158 VYFVNSGTEANELAMLMA------RLSTGNLGMIALRNAYHGGSSGTIGLT----ALNTW 207
V+F +SG+ + E+A MA R G ++ R YHG + + + +++
Sbjct: 138 VFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSL 197
Query: 208 KYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAE-TIQGVGGA 266
+ ++ P Y ++ +A + L H +G++A + E +QG GG
Sbjct: 198 WTDVLAAQVFAPQVPRDYDPAY---SAAFEAQLAQH-----AGELAAVVVEPVVQGAGGM 249
Query: 267 VELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG 326
P YL + DI R+ + I DE+ TGFGRTG+ + + GV PDI+ + K + G
Sbjct: 250 RFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALF-AADHAGVSPDIMCVGKALTGG 308
Query: 327 -LPLGAVVTTPEIANVMAQK-----IQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADV 380
L L A + T ++A+ ++ + TF NP+ A +A + ++ + + ++
Sbjct: 309 YLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQDWRTRITEL 368
Query: 381 GSHLLGRLRTLQERHDIIGDVRGRGLMVGMEL--VTDRKEKTPAKAETAVLFEKLRE 435
+ L L T + + DVR G + +E D TPA + V R
Sbjct: 369 AAGLTAGLDTARAL-PAVTDVRVCGAIGVIECDRPVDLAVATPAALDRGVWLRPFRN 424
>pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 112/377 (29%), Positives = 164/377 (43%), Gaps = 50/377 (13%)
Query: 80 LNIVEGKMQYLFDE-NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA------T 132
L++ YL D GRRYLD F + + + G P +++ ++L+Q A +
Sbjct: 37 LDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNS 96
Query: 133 TIYLHHAIADFAEALASKMPGN--LKVVYFVNSGTEANELAMLMA-----RLSTGN---- 181
+Y A+A F E A ++ G+ L ++FV G A E A+ A R + +
Sbjct: 97 DVY-SVAMARFVETFA-RVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDP 154
Query: 182 -LG--MIALRNAYHGGSSGTIGLTALN-TWKYPIPQGEIHHVVNPDPYHG---------- 227
LG ++ LR A+HG S T+ LT T P+ + + P G
Sbjct: 155 ALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALE 214
Query: 228 SFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGV 287
+ AR A + + H +A F+AE IQG GG P + + ++ + +
Sbjct: 215 AEALRQARAAFETRPH-------DIACFVAEPIQGAGGDRHFRPEFFAAMRELCDEFDAL 267
Query: 288 CIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIG-NGLPLGAVVTTPEIA-NVMAQK 345
I DEVQTG G TG+ W ++ V PDIV K G+ G V E+A NV A
Sbjct: 268 LIFDEVQTGCGLTGTA-WAYQQLDVAPDIVAFGKKTQVCGVMAGRRVD--EVADNVFAVP 324
Query: 346 IQFN-TFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHD-IIGDVRG 403
+ N T+GGN +L VI+ E G +L RL L ++ D RG
Sbjct: 325 SRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRG 384
Query: 404 RGLMVGMELVT--DRKE 418
RGLM L T DR E
Sbjct: 385 RGLMCAFSLPTTADRDE 401
>pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form
pdb|2CJG|A Chain A, Lysine Aminotransferase From M. Tuberculosis In Bound Pmp
Form
pdb|2CJH|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form With Bound Substrate 2-
Ketoglutarate
pdb|2JJG|A Chain A, Crystal Structure Of The M. Tuberculosis Lysine-Epsilon
Aminotransferase (Rv3290c) Complexed To An Inhibitor
pdb|2CJD|A Chain A, Lysine Aminotransferase From M. Tuberculosis In External
Aldimine Form
Length = 449
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 112/377 (29%), Positives = 165/377 (43%), Gaps = 50/377 (13%)
Query: 80 LNIVEGKMQYLFDE-NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA------T 132
L++ YL D GRRYLD F + + + G P +++ ++L+Q A +
Sbjct: 37 LDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNS 96
Query: 133 TIYLHHAIADFAEALASKMPGN--LKVVYFVNSGTEANELAMLMA-----RLSTGN---- 181
+Y A+A F E A ++ G+ L ++FV G A E A+ A R + +
Sbjct: 97 DVY-SVAMARFVETFA-RVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDP 154
Query: 182 -LG--MIALRNAYHGGSSGTIGLTALN-TWKYPIPQGEIHHVVNPDPYHG---------- 227
LG ++ LR A+HG S T+ LT T P+ + + P G
Sbjct: 155 ALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALE 214
Query: 228 SFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGV 287
+ AR A + + H +A F+AE IQG GG P + + ++ + +
Sbjct: 215 AEALRQARAAFETRPH-------DIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDAL 267
Query: 288 CIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIG-NGLPLGAVVTTPEIA-NVMAQK 345
I DEVQTG G TG+ W ++ V PDIV K G+ G V E+A NV A
Sbjct: 268 LIFDEVQTGCGLTGTA-WAYQQLDVAPDIVAFGKKTQVCGVMAGRRVD--EVADNVFAVP 324
Query: 346 IQFN-TFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTL-QERHDIIGDVRG 403
+ N T+GGN +L VI+ E G +L RL L + ++ D RG
Sbjct: 325 SRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRG 384
Query: 404 RGLMVGMELVT--DRKE 418
RGLM L T DR E
Sbjct: 385 RGLMCAFSLPTTADRDE 401
>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|B Chain B, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|C Chain C, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|D Chain D, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHW|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHY|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
Length = 472
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 94/403 (23%), Positives = 165/403 (40%), Gaps = 56/403 (13%)
Query: 54 GPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHC 113
GP + ++ ++ H++ N E + YL D +G R LD ++ I ++ G+
Sbjct: 24 GPRSRELMKQLNIIQNAEAVHFF---CNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYS 80
Query: 114 HPDVLNAIFEQSKLLQHATTIYL-----HHAIADFAEALASKMPGNLKVVYFVNSGTEAN 168
HP ++ + + + L + + E+L S P + + + G+ +N
Sbjct: 81 HPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSN 140
Query: 169 E------------------------LAMLMARLSTG--NLGMIALRNAYHGGSSGTIGLT 202
E L M + G + +++ A+HG + G + T
Sbjct: 141 ENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATT 200
Query: 203 --------ALNTWKYPI-PQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGK-- 251
+ ++ +PI P + + + + + + AR ++++D I K
Sbjct: 201 HSKAIHKIDIPSFDWPIAPFPRLKYPL--EEFVKENQQEEARCLEEVEDLIVKYRKKKKT 258
Query: 252 VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQG 311
VAG I E IQ GG + + + + DI RK G + DEVQTG G TG +W E G
Sbjct: 259 VAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGK-FWAHEHWG 317
Query: 312 V--IPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID 369
+ D++T +K + G E +I FNT+ G+P + V+ +I
Sbjct: 318 LDDPADVMTFSKKMMT----GGFFHKEEFRPNAPYRI-FNTWLGDPSKNLLLAEVINIIK 372
Query: 370 KERRQAHCADVGSHLLGRLRTLQERH-DIIGDVRGRGLMVGME 411
+E ++ A G LL L LQ R+ I VRGRG +
Sbjct: 373 REDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFD 415
>pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M.
Tuberculosis
Length = 449
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 111/377 (29%), Positives = 165/377 (43%), Gaps = 50/377 (13%)
Query: 80 LNIVEGKMQYLFDE-NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA------T 132
L++ YL D GRRYLD F + + + G P +++ ++L+Q A +
Sbjct: 37 LDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNS 96
Query: 133 TIYLHHAIADFAEALASKMPGN--LKVVYFVNSGTEANELAMLMA-----RLSTGN---- 181
+Y A+A F E A ++ G+ L ++FV G A E A+ A R + +
Sbjct: 97 DVY-SVAMARFVETFA-RVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDP 154
Query: 182 -LG--MIALRNAYHGGSSGTIGLTALN-TWKYPIPQGEIHHVVNPDPYHG---------- 227
LG ++ LR A+HG S T+ LT T P+ + + P G
Sbjct: 155 ALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALE 214
Query: 228 SFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGV 287
+ AR A + + H +A F+AE IQG GG P + + ++ + +
Sbjct: 215 AEALRQARAAFETRPH-------DIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDAL 267
Query: 288 CIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIG-NGLPLGAVVTTPEIA-NVMAQK 345
I DEVQTG G TG+ W ++ V PDIV K G+ G V E+A NV A
Sbjct: 268 LIFDEVQTGCGLTGTA-WAYQQLDVAPDIVAFGKKTQVCGVMAGRRVD--EVADNVFAVP 324
Query: 346 IQFN-TFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTL-QERHDIIGDVRG 403
+ N ++GGN +L VI+ E G +L RL L + ++ D RG
Sbjct: 325 SRLNSSWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRG 384
Query: 404 RGLMVGMELVT--DRKE 418
RGLM L T DR E
Sbjct: 385 RGLMCAFSLPTTADRDE 401
>pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 111/377 (29%), Positives = 164/377 (43%), Gaps = 50/377 (13%)
Query: 80 LNIVEGKMQYLFDE-NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA------T 132
L++ YL D GRRYLD F + + + G P +++ ++L+Q A +
Sbjct: 37 LDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNS 96
Query: 133 TIYLHHAIADFAEALASKMPGN--LKVVYFVNSGTEANELAMLMA-----RLSTGN---- 181
+Y A+A F E A ++ G+ L ++FV G A E A+ A R + +
Sbjct: 97 DVY-SVAMARFVETFA-RVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDP 154
Query: 182 -LG--MIALRNAYHGGSSGTIGLTALN-TWKYPIPQGEIHHVVNPDPYHG---------- 227
LG ++ LR A+HG S T+ LT T P+ + + P G
Sbjct: 155 ALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALE 214
Query: 228 SFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGV 287
+ AR A + + H +A F+AE IQG GG P + + ++ + +
Sbjct: 215 AEALRQARAAFETRPH-------DIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDAL 267
Query: 288 CIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIG-NGLPLGAVVTTPEIA-NVMAQK 345
I DEVQTG G TG+ W ++ V PDIV K G+ G V E+A NV A
Sbjct: 268 LIFDEVQTGCGLTGTA-WAYQQLDVAPDIVAFGKKTQVCGVMAGRRVD--EVADNVFAVP 324
Query: 346 IQF-NTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHD-IIGDVRG 403
+ +T+GGN +L VI+ E G +L RL L ++ D RG
Sbjct: 325 SRLASTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRG 384
Query: 404 RGLMVGMELVT--DRKE 418
RGLM L T DR E
Sbjct: 385 RGLMCAFSLPTTADRDE 401
>pdb|4AO9|A Chain A, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AO9|B Chain B, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AOA|A Chain A, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AOA|B Chain B, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
Length = 454
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 86/368 (23%), Positives = 147/368 (39%), Gaps = 35/368 (9%)
Query: 55 PSADQVFQKRKQFL----GPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSC 110
P++ + F+ + +++ S+ Y PL I G+ L+D +G RY D A
Sbjct: 42 PASQRQFEAQARYMPGANSRSVLFYAPFPLTIARGEGAALWDADGHRYADFIAEYTAGVY 101
Query: 111 GHCHPDVLNAIFEQSKLLQHATTIYLHHAI-ADFAEALASKMPGNLKVVYFVNSGTEANE 169
GH P++ +A+ E +Q + H+ + A + + P ++ + F NSGTEAN
Sbjct: 102 GHSAPEIRDAVIEA---MQGGINLTGHNLLEGRLARLICERFP-QIEQLRFTNSGTEANL 157
Query: 170 LAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSF 229
+A+ A TG ++ YHGG G + T + +V P
Sbjct: 158 MALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDF-------LVLPY------ 204
Query: 230 GSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI 289
+DA ++ H ++A + E +QG G + P +L+ + + + G + +
Sbjct: 205 -NDAQTARAQIERH-----GPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLV 258
Query: 290 ADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKI--- 346
DEV T R H G+ D+ T+ K IG G+ GA ++ + +
Sbjct: 259 FDEVMT--SRLAPHGLA-NKLGIRSDLTTLGKYIGGGMSFGAFGGRADVMALFDPRTGPL 315
Query: 347 -QFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRG 405
TF N + A G A L + A+ G L RL L + G G
Sbjct: 316 AHSGTFNNNVMTMAAGYAGLTKLFTPEAAGALAERGEALRARLNALCANEGVAMQFTGIG 375
Query: 406 LMVGMELV 413
++ V
Sbjct: 376 SLMNAHFV 383
>pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Yersinia Pestis Co92
Length = 429
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 120/303 (39%), Gaps = 29/303 (9%)
Query: 79 PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHH 138
PL I YLFD +G+ Y+D GH HP + A+ E ++ +
Sbjct: 36 PLFIERADGAYLFDVDGKAYIDYVGSWGPXILGHNHPAIRQAVIEA---VERGLSFGAPT 92
Query: 139 AIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGS--- 195
L + + V VNSGTEA A+ +AR TG +I YHG +
Sbjct: 93 EXEVKXAQLVTDLVPTXDXVRXVNSGTEATXSAIRLARGYTGRDKIIKFEGCYHGHADCL 152
Query: 196 ---SGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKV 252
+G+ LT +P H + +D A Q + + +V
Sbjct: 153 LVKAGSGALTLGQPNSPGVPTDFAKHTLT------CTYNDLASVRQAFEQYPQ-----EV 201
Query: 253 AGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGF--GRTGSHYWGFETQ 310
A I E + G + P +L + + + G + I DEV TGF G+ +
Sbjct: 202 ACIIVEPVAGNXNCIPPLPEFLPGLRALCDEFGALLIIDEVXTGFRVALAGAQDY----Y 257
Query: 311 GVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK---IQFNTFGGNPVCSAGGLAVLRV 367
VIPD+ + K IG G P+GA E+ N +A Q T GNP+ A G A L
Sbjct: 258 HVIPDLTCLGKIIGGGXPVGAFGGRREVXNALAPTGPVYQAGTLSGNPIAXAAGFACLTE 317
Query: 368 IDK 370
I +
Sbjct: 318 ISQ 320
>pdb|2YKU|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
Length = 465
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 108/263 (41%), Gaps = 29/263 (11%)
Query: 71 SIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH 130
SI + PL I +G D +G Y++ GH HP + A+ + +
Sbjct: 75 SILFHRPFPLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGLN 134
Query: 131 ATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNA 190
+T + A+ FAEA+ + P ++ +V F NSGTEAN +A+ A TG ++A
Sbjct: 135 LSTQTENEAL--FAEAVCDRFP-SIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGG 191
Query: 191 YHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFG--SDAARYAQDLQDHIDFGT 248
YHGG LN H PYH G +D A L+ H
Sbjct: 192 YHGG--------LLNFAS--------GHAPTNAPYHVVLGVYNDVEGTADLLKRH----- 230
Query: 249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFE 308
A + E + G GG V +L L+ + G + I DEV T G E
Sbjct: 231 GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMTSRLSGGGAQ---E 287
Query: 309 TQGVIPDIVTMAKGIGNGLPLGA 331
G+ D+ T+ K IG G+ GA
Sbjct: 288 MLGISADLTTLGKYIGGGMSFGA 310
>pdb|2CY8|A Chain A, Crystal Structure Of D-Phenylglycine Aminotransferase
(D-Phgat) From Pseudomonas Strutzeri St-201
Length = 453
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 117/277 (42%), Gaps = 34/277 (12%)
Query: 92 DENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAI-ADFAEALASK 150
D +G YLD F G + GH HP V AI E L H H + +AE + +
Sbjct: 53 DVDGNVYLDFFGGHGALVLGHGHPRVNAAIAEA---LSHGVQYAASHPLEVRWAERIVAA 109
Query: 151 MPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYP 210
P +++ + F SGTE LA+ +AR TG ++ YHG W
Sbjct: 110 FP-SIRKLRFTGSGTETTLLALRVARAFTGRRMILRFEGHYHG-------------WHDF 155
Query: 211 IPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHID-----FGTSGK-VAGFIAETIQGVG 264
G H + P G A D I+ F G +A FIAE +
Sbjct: 156 SASGYNSH-FDGQPAPGVLPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHF 214
Query: 265 GAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFET-QGVIPDIVTMAKGI 323
G ++ +L+ ++ R+ G + I DEV +GF R G+H G + V PD+ +AK
Sbjct: 215 GVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNH--GMQALLDVQPDLTCLAKAS 271
Query: 324 GNGLPLGAVVTTPEIANVMAQK-----IQFNTFGGNP 355
GLP G + ++ V+++ + TF GNP
Sbjct: 272 AGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNP 308
>pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|C Chain C, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|D Chain D, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0H|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0H|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0R|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb).
pdb|4A0R|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb)
Length = 831
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 97/259 (37%), Gaps = 76/259 (29%)
Query: 158 VYFVNSGTEANELAMLMA--RLSTGN-------------LGMIALRNAYHGGSSGTIGLT 202
VYF ++G+ A E+A+ MA + + + +IALR +YHG + G +
Sbjct: 445 VYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQ 504
Query: 203 ALN----------------------------TWKYPIPQGEIHHVVNPDPYHGSFGS--- 231
A + +W +P+ P +G+F S
Sbjct: 505 APSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPES----FSEIAPEYGTFTSRDE 560
Query: 232 ------DAARYA--------QDLQDHIDFGTSGKVAGFIAE-TIQGVGGAVELAPGYLKL 276
DA+ A + LQ+H S V I E I G GG + P + ++
Sbjct: 561 IFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRV 620
Query: 277 VYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGL-PLGAVVTT 335
+ + R I DEV TGF R G E G PDI AK + G+ PL + T
Sbjct: 621 LVNECRNRKIPVIFDEVFTGFWRLGVET-TTELLGCKPDIACFAKLLTGGMVPLAVTLAT 679
Query: 336 PEIANVMAQKIQFNTFGGN 354
+ F++F G+
Sbjct: 680 DAV---------FDSFSGD 689
>pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form.
pdb|4A0F|B Chain B, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form
Length = 831
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Query: 233 AARYAQDLQDHIDFGTSGKVAGFIAE-TIQGVGGAVELAPGYLKLVYDIVRKAGGVCIAD 291
+A ++ LQ+H S V I E I G GG + P + +++ + R I D
Sbjct: 576 SAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGXHXVDPLFQRVLVNECRNRKIPVIFD 635
Query: 292 EVQTGFGRTGSHYWGFETQGVIPDIVTMAKGI-GNGLPLGAVVTTPEIANVMAQKIQFNT 350
EV TGF R G E G PDI AK + G +PL + T + F++
Sbjct: 636 EVFTGFWRLGVET-TTELLGCKPDIACFAKLLTGGXVPLAVTLATDAV---------FDS 685
Query: 351 FGGN 354
F G+
Sbjct: 686 FSGD 689
>pdb|2X06|A Chain A, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|B Chain B, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|C Chain C, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|D Chain D, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|E Chain E, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|F Chain F, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|G Chain G, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|H Chain H, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
Length = 344
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Query: 164 GTEANELAMLMARLSTGNLGMIALRNAYHGGSSG----------TIGLTALNTWKYPIPQ 213
G +A ELA+ A+ +G++A RNA H G +G IG+T NT P
Sbjct: 90 GKKAXELAIKKAK--NVGVGVVATRNANHFGIAGYYSELAXNQDXIGITITNTEPAXAPF 147
Query: 214 GEIHHVVNPDPYHGSFGSDAARYAQD 239
G ++ +P +F + +++ D
Sbjct: 148 GGKEKILGTNPIAIAFKGNKYKFSLD 173
>pdb|3EMX|A Chain A, Crystal Structure Of Thioredoxin From Aeropyrum Pernix
pdb|3EMX|B Chain B, Crystal Structure Of Thioredoxin From Aeropyrum Pernix
Length = 135
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 73 FHYYQKPLNIVE-GKMQYLFDENGRRYL--DAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ 129
Y ++ L ++E G++ Y+ E R+ L DA + + +C HCH D + + SK +
Sbjct: 3 LSYVKEGLAVLEDGRLIYITPEEFRQLLQGDAILAVYSKTCPHCHRD-WPQLIQASKEVD 61
Query: 130 HATTIYLHHAIADFAEALASKMPGN 154
+++ ++ E A+++ N
Sbjct: 62 VPIVMFIWGSLIGERELSAARLEMN 86
>pdb|3O58|Y Chain Y, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O5H|Y Chain Y, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The Second 80s In The Asymmetric Unit
Length = 149
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 214 GEIHHVVNPDPYH-GSFGSDAARYAQDLQDHI 244
GE HH +N D YH G FG RY Q H
Sbjct: 37 GEHHHRINMDKYHPGYFGKVGMRYFHKQQAHF 68
>pdb|3JYW|V Chain V, Structure Of The 60s Proteins For Eukaryotic Ribosome
Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome
At 8.9a Resolution
Length = 142
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 214 GEIHHVVNPDPYH-GSFGSDAARYAQDLQDHI 244
GE HH +N D YH G FG RY Q H
Sbjct: 31 GEHHHRINMDKYHPGYFGKVGMRYFHKQQAHF 62
>pdb|1S1I|V Chain V, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is
In File 1s1h
Length = 148
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 214 GEIHHVVNPDPYH-GSFGSDAARYAQDLQDHI 244
GE HH +N D YH G FG RY Q H
Sbjct: 36 GEHHHRINMDKYHPGYFGKVGMRYFHKQQAHF 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,279,968
Number of Sequences: 62578
Number of extensions: 609006
Number of successful extensions: 1808
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1488
Number of HSP's gapped (non-prelim): 101
length of query: 477
length of database: 14,973,337
effective HSP length: 102
effective length of query: 375
effective length of database: 8,590,381
effective search space: 3221392875
effective search space used: 3221392875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)