Query 011777
Match_columns 477
No_of_seqs 337 out of 2713
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 15:06:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011777.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011777hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4atq_A 4-aminobutyrate transam 100.0 3.9E-83 1.3E-87 654.4 49.1 422 51-476 21-454 (456)
2 4e3q_A Pyruvate transaminase; 100.0 9.5E-79 3.3E-83 624.2 41.5 413 59-476 26-467 (473)
3 4ao9_A Beta-phenylalanine amin 100.0 5.9E-73 2E-77 576.6 42.4 392 54-476 41-445 (454)
4 4ffc_A 4-aminobutyrate aminotr 100.0 2.3E-68 7.8E-73 549.9 48.2 419 51-476 21-448 (453)
5 3oks_A 4-aminobutyrate transam 100.0 3.6E-68 1.2E-72 548.3 46.3 422 51-476 18-450 (451)
6 3i5t_A Aminotransferase; pyrid 100.0 6.6E-68 2.3E-72 549.3 44.1 413 58-476 12-453 (476)
7 3hmu_A Aminotransferase, class 100.0 2.1E-67 7.3E-72 544.7 39.3 415 56-476 11-451 (472)
8 3n5m_A Adenosylmethionine-8-am 100.0 1.1E-64 3.7E-69 522.7 44.6 419 56-477 8-452 (452)
9 3gju_A Putative aminotransfera 100.0 1.3E-64 4.6E-69 523.1 43.2 416 59-476 8-455 (460)
10 4a0g_A Adenosylmethionine-8-am 100.0 2E-66 6.8E-71 565.7 30.5 396 78-477 356-828 (831)
11 4a6r_A Omega transaminase; tra 100.0 2E-64 6.7E-69 521.7 39.3 414 58-476 8-448 (459)
12 3tfu_A Adenosylmethionine-8-am 100.0 2.6E-64 9E-69 519.7 39.2 403 54-476 27-452 (457)
13 3dod_A Adenosylmethionine-8-am 100.0 5.8E-64 2E-68 516.6 40.2 412 58-476 3-442 (448)
14 3l44_A Glutamate-1-semialdehyd 100.0 1.5E-60 5E-65 489.2 41.2 408 54-476 5-429 (434)
15 3dxv_A Alpha-amino-epsilon-cap 100.0 4.1E-60 1.4E-64 486.6 42.6 413 57-476 6-424 (439)
16 1zod_A DGD, 2,2-dialkylglycine 100.0 5.7E-60 1.9E-64 484.6 43.1 418 56-476 5-431 (433)
17 3k28_A Glutamate-1-semialdehyd 100.0 1.9E-60 6.5E-65 487.7 38.5 408 54-477 4-427 (429)
18 4e77_A Glutamate-1-semialdehyd 100.0 5.3E-60 1.8E-64 484.4 40.9 407 56-477 6-429 (429)
19 3i4j_A Aminotransferase, class 100.0 9.7E-60 3.3E-64 482.5 40.9 394 76-476 9-427 (430)
20 1z7d_A Ornithine aminotransfer 100.0 2.3E-59 7.7E-64 480.1 42.2 391 55-476 27-428 (433)
21 3fq8_A Glutamate-1-semialdehyd 100.0 1.8E-59 6.1E-64 480.1 40.3 410 53-477 2-427 (427)
22 2oat_A Ornithine aminotransfer 100.0 3E-59 1E-63 479.9 41.8 394 52-477 35-439 (439)
23 1ohv_A 4-aminobutyrate aminotr 100.0 1.1E-59 3.6E-64 487.3 37.3 415 39-477 12-471 (472)
24 2yky_A Beta-transaminase; tran 100.0 3.2E-64 1.1E-68 515.9 0.0 392 54-476 54-459 (465)
25 3nx3_A Acoat, acetylornithine 100.0 4E-58 1.4E-62 465.2 39.1 372 76-477 16-395 (395)
26 2cjg_A L-lysine-epsilon aminot 100.0 5.3E-58 1.8E-62 472.1 34.2 400 58-476 18-447 (449)
27 2epj_A Glutamate-1-semialdehyd 100.0 2.1E-57 7.3E-62 465.7 36.9 409 53-476 8-430 (434)
28 2pb2_A Acetylornithine/succiny 100.0 3.5E-57 1.2E-61 462.2 36.9 389 57-476 21-417 (420)
29 2e7u_A Glutamate-1-semialdehyd 100.0 2.6E-56 8.8E-61 456.3 38.1 404 55-474 4-424 (424)
30 3a8u_X Omega-amino acid--pyruv 100.0 1.8E-55 6.3E-60 453.3 38.0 393 77-477 31-447 (449)
31 2eo5_A 419AA long hypothetical 100.0 1.4E-54 4.9E-59 442.8 42.0 398 57-477 3-418 (419)
32 2cy8_A D-phgat, D-phenylglycin 100.0 9.4E-55 3.2E-59 448.6 38.2 403 54-476 11-434 (453)
33 1sff_A 4-aminobutyrate aminotr 100.0 1.5E-52 5.2E-57 428.2 45.1 415 56-476 3-423 (426)
34 1s0a_A Adenosylmethionine-8-am 100.0 1.4E-52 4.7E-57 429.3 43.2 382 78-476 24-423 (429)
35 3ruy_A Ornithine aminotransfer 100.0 1.1E-52 3.9E-57 424.6 38.3 380 59-475 2-392 (392)
36 4adb_A Succinylornithine trans 100.0 3.8E-52 1.3E-56 422.5 38.6 373 76-476 19-399 (406)
37 2ord_A Acoat, acetylornithine 100.0 6.2E-49 2.1E-53 398.0 36.8 371 76-477 20-397 (397)
38 1vef_A Acetylornithine/acetyl- 100.0 6.6E-48 2.3E-52 390.1 35.6 386 58-475 7-395 (395)
39 2eh6_A Acoat, acetylornithine 100.0 1.6E-45 5.4E-50 369.8 37.6 360 77-474 9-375 (375)
40 3l8a_A METC, putative aminotra 100.0 2E-40 6.7E-45 338.4 24.7 360 78-476 41-421 (421)
41 2w8t_A SPT, serine palmitoyltr 100.0 6.3E-38 2.2E-42 320.4 34.4 368 55-476 25-414 (427)
42 3tqx_A 2-amino-3-ketobutyrate 100.0 1.8E-35 6.2E-40 298.7 31.4 350 76-477 24-396 (399)
43 3dzz_A Putative pyridoxal 5'-p 100.0 4.2E-36 1.4E-40 302.6 26.5 360 80-477 11-389 (391)
44 1fc4_A 2-amino-3-ketobutyrate 100.0 5.2E-35 1.8E-39 295.9 31.6 351 76-477 25-397 (401)
45 3kax_A Aminotransferase, class 100.0 7E-35 2.4E-39 292.8 30.5 358 79-475 6-383 (383)
46 3fdb_A Beta C-S lyase, putativ 100.0 9.8E-36 3.3E-40 298.5 22.4 353 80-477 7-376 (377)
47 1d2f_A MALY protein; aminotran 100.0 4.6E-34 1.6E-38 288.0 31.8 359 81-476 8-388 (390)
48 4dq6_A Putative pyridoxal phos 100.0 4.5E-35 1.5E-39 295.0 23.6 356 80-475 11-391 (391)
49 1c7n_A Cystalysin; transferase 100.0 1E-34 3.4E-39 293.6 23.7 359 81-476 9-392 (399)
50 3a2b_A Serine palmitoyltransfe 100.0 2.1E-33 7.2E-38 283.9 33.0 347 76-476 24-391 (398)
51 1yiz_A Kynurenine aminotransfe 100.0 7.3E-34 2.5E-38 290.3 29.6 351 97-476 38-428 (429)
52 3ftb_A Histidinol-phosphate am 100.0 3.6E-33 1.2E-37 278.2 30.2 343 79-477 8-361 (361)
53 3kki_A CAI-1 autoinducer synth 100.0 7.9E-34 2.7E-38 288.3 24.7 338 83-476 46-403 (409)
54 2zc0_A Alanine glyoxylate tran 100.0 2.2E-33 7.4E-38 284.6 26.3 346 94-476 32-403 (407)
55 3aow_A Putative uncharacterize 100.0 6.6E-33 2.2E-37 284.9 28.9 346 95-476 75-444 (448)
56 2zyj_A Alpha-aminodipate amino 100.0 1E-33 3.5E-38 286.2 22.0 343 95-476 31-392 (397)
57 3nra_A Aspartate aminotransfer 100.0 4.9E-34 1.7E-38 289.1 19.6 361 81-476 21-404 (407)
58 1bs0_A Protein (8-amino-7-oxon 100.0 2E-32 6.8E-37 275.3 30.9 344 76-473 20-383 (384)
59 3jtx_A Aminotransferase; NP_28 100.0 2.8E-33 9.6E-38 282.6 23.8 354 80-474 14-395 (396)
60 1vp4_A Aminotransferase, putat 100.0 2.1E-33 7E-38 286.8 22.0 349 95-476 42-417 (425)
61 3h14_A Aminotransferase, class 100.0 1.1E-32 3.9E-37 277.9 27.1 341 93-476 28-381 (391)
62 1lc5_A COBD, L-threonine-O-3-p 100.0 7.8E-33 2.7E-37 276.5 25.7 333 91-476 19-359 (364)
63 3ly1_A Putative histidinol-pho 100.0 3.4E-32 1.2E-36 270.5 29.2 338 85-476 5-351 (354)
64 3ezs_A Aminotransferase ASPB; 100.0 7.6E-33 2.6E-37 277.5 24.1 334 93-476 21-374 (376)
65 3euc_A Histidinol-phosphate am 100.0 9.5E-32 3.3E-36 268.7 31.8 331 95-475 29-366 (367)
66 2dou_A Probable N-succinyldiam 100.0 1.2E-32 4.1E-37 276.2 25.2 336 93-474 22-375 (376)
67 3b46_A Aminotransferase BNA3; 100.0 1.5E-32 5.1E-37 282.3 25.4 345 94-473 55-443 (447)
68 3b1d_A Betac-S lyase; HET: PLP 100.0 6.4E-36 2.2E-40 302.0 0.0 359 80-475 13-391 (392)
69 2x5d_A Probable aminotransfera 100.0 2E-32 6.9E-37 278.2 25.7 345 93-476 34-397 (412)
70 1j32_A Aspartate aminotransfer 100.0 9.4E-32 3.2E-36 270.8 27.1 343 94-476 28-386 (388)
71 2o1b_A Aminotransferase, class 100.0 4.2E-32 1.4E-36 275.3 24.4 340 93-476 44-402 (404)
72 3fvs_A Kynurenine--oxoglutarat 100.0 2.9E-31 1E-35 270.2 30.6 355 96-477 28-422 (422)
73 1gd9_A Aspartate aminotransfer 100.0 1.2E-31 3.9E-36 270.2 27.0 341 96-476 26-385 (389)
74 2z61_A Probable aspartate amin 100.0 1.8E-31 6.3E-36 267.0 27.3 326 94-475 27-369 (370)
75 1o4s_A Aspartate aminotransfer 100.0 1.8E-31 6.2E-36 269.1 27.4 338 94-476 39-388 (389)
76 1v2d_A Glutamine aminotransfer 100.0 9.4E-32 3.2E-36 270.2 25.1 329 98-476 27-370 (381)
77 3dyd_A Tyrosine aminotransfera 100.0 5.2E-31 1.8E-35 269.2 30.1 350 91-476 49-423 (427)
78 3piu_A 1-aminocyclopropane-1-c 100.0 1.1E-31 3.7E-36 274.8 24.8 355 91-476 31-431 (435)
79 3ffh_A Histidinol-phosphate am 100.0 5.4E-31 1.9E-35 262.8 29.1 326 95-474 31-363 (363)
80 1u08_A Hypothetical aminotrans 100.0 3.8E-31 1.3E-35 266.3 26.6 338 97-472 31-385 (386)
81 3cq5_A Histidinol-phosphate am 100.0 5.9E-30 2E-34 256.1 33.1 324 99-475 33-366 (369)
82 2o0r_A RV0858C (N-succinyldiam 100.0 4.9E-31 1.7E-35 267.8 24.8 340 98-476 27-395 (411)
83 1xi9_A Putative transaminase; 100.0 8.5E-31 2.9E-35 265.7 25.4 345 93-476 35-402 (406)
84 3g0t_A Putative aminotransfera 100.0 6.9E-31 2.4E-35 268.7 24.8 353 84-476 32-436 (437)
85 2gb3_A Aspartate aminotransfer 100.0 1.2E-30 4E-35 264.9 26.2 338 93-476 40-401 (409)
86 3e2y_A Kynurenine-oxoglutarate 100.0 5.3E-30 1.8E-34 259.8 29.6 350 96-472 23-408 (410)
87 3ele_A Amino transferase; RER0 100.0 3.4E-30 1.2E-34 260.3 27.6 335 95-476 34-395 (398)
88 3qgu_A LL-diaminopimelate amin 100.0 8.6E-31 2.9E-35 269.2 23.3 347 92-476 65-439 (449)
89 3op7_A Aminotransferase class 100.0 2.8E-30 9.6E-35 258.8 25.9 303 137-476 62-370 (375)
90 3fkd_A L-threonine-O-3-phospha 100.0 4.5E-30 1.5E-34 255.0 26.4 331 83-476 2-341 (350)
91 1iay_A ACC synthase 2, 1-amino 100.0 6.4E-30 2.2E-34 261.0 27.4 346 97-476 37-426 (428)
92 3hdo_A Histidinol-phosphate am 100.0 7.9E-30 2.7E-34 254.3 27.1 327 93-475 23-353 (360)
93 2x5f_A Aspartate_tyrosine_phen 100.0 8.7E-31 3E-35 267.6 18.0 341 96-476 47-428 (430)
94 2bwn_A 5-aminolevulinate synth 100.0 1.4E-28 4.9E-33 248.7 34.0 333 94-476 44-399 (401)
95 1ajs_A Aspartate aminotransfer 100.0 4.8E-30 1.6E-34 260.5 20.6 345 94-477 28-411 (412)
96 1fg7_A Histidinol phosphate am 100.0 2.1E-29 7.3E-34 251.0 24.9 318 95-473 28-354 (356)
97 1elu_A L-cysteine/L-cystine C- 100.0 2.2E-29 7.7E-34 253.1 25.2 333 94-473 15-388 (390)
98 3get_A Histidinol-phosphate am 100.0 2.3E-29 7.7E-34 251.3 25.0 327 96-475 30-365 (365)
99 2q7w_A Aspartate aminotransfer 100.0 3.8E-30 1.3E-34 259.7 18.8 345 90-474 20-396 (396)
100 1b5p_A Protein (aspartate amin 100.0 1.1E-28 3.6E-33 248.5 27.8 342 94-476 29-384 (385)
101 3f9t_A TDC, L-tyrosine decarbo 100.0 3.1E-28 1.1E-32 244.9 30.9 321 112-475 41-396 (397)
102 3asa_A LL-diaminopimelate amin 100.0 1.8E-29 6E-34 255.5 21.7 335 95-476 32-392 (400)
103 1kmj_A Selenocysteine lyase; p 100.0 2.2E-28 7.7E-33 247.0 29.0 323 111-476 33-404 (406)
104 2ay1_A Aroat, aromatic amino a 100.0 1E-29 3.5E-34 256.4 18.6 340 94-473 24-392 (394)
105 1bw0_A TAT, protein (tyrosine 100.0 8.5E-29 2.9E-33 251.6 25.4 346 96-476 33-412 (416)
106 2r2n_A Kynurenine/alpha-aminoa 100.0 2.1E-28 7E-33 249.7 27.7 312 134-476 78-423 (425)
107 3ez1_A Aminotransferase MOCR f 100.0 3E-29 1E-33 255.6 18.3 345 98-476 27-414 (423)
108 2e7j_A SEP-tRNA:Cys-tRNA synth 100.0 3.8E-29 1.3E-33 249.8 18.3 331 95-477 8-370 (371)
109 1vjo_A Alanine--glyoxylate ami 100.0 3.9E-28 1.3E-32 244.7 24.8 328 94-475 32-393 (393)
110 2dr1_A PH1308 protein, 386AA l 100.0 8.9E-28 3E-32 241.1 26.6 329 96-476 20-378 (386)
111 3d6k_A Putative aminotransfera 100.0 8.4E-29 2.9E-33 252.4 18.9 345 98-476 34-417 (422)
112 1t3i_A Probable cysteine desul 100.0 4.8E-27 1.6E-31 238.5 31.4 334 93-476 24-412 (420)
113 3g7q_A Valine-pyruvate aminotr 100.0 5E-28 1.7E-32 245.8 23.9 347 96-476 31-412 (417)
114 3kgw_A Alanine-glyoxylate amin 100.0 7.5E-28 2.6E-32 242.1 23.5 318 113-476 34-387 (393)
115 3p1t_A Putative histidinol-pho 100.0 5E-27 1.7E-31 231.4 28.8 318 94-475 14-335 (337)
116 4f4e_A Aromatic-amino-acid ami 100.0 7.1E-28 2.4E-32 245.3 23.2 342 96-475 49-420 (420)
117 3ei9_A LL-diaminopimelate amin 100.0 1.3E-27 4.6E-32 244.1 25.3 347 91-475 51-426 (432)
118 3ppl_A Aspartate aminotransfer 100.0 1.8E-28 6E-33 250.3 18.0 345 98-476 35-419 (427)
119 3lvm_A Cysteine desulfurase; s 100.0 2.2E-27 7.6E-32 241.5 26.0 333 92-476 19-398 (423)
120 1eg5_A Aminotransferase; PLP-d 100.0 3.6E-27 1.2E-31 236.3 27.1 331 97-476 3-375 (384)
121 3rq1_A Aminotransferase class 100.0 2E-27 6.9E-32 241.7 25.3 342 95-477 37-415 (418)
122 3t18_A Aminotransferase class 100.0 4.1E-27 1.4E-31 239.0 27.5 337 95-475 36-408 (413)
123 3if2_A Aminotransferase; YP_26 100.0 2.3E-27 7.7E-32 243.2 24.7 351 96-476 31-439 (444)
124 1qz9_A Kynureninase; kynurenin 100.0 5.9E-27 2E-31 237.8 27.6 331 94-476 27-401 (416)
125 1m32_A 2-aminoethylphosphonate 100.0 5E-27 1.7E-31 233.6 25.6 332 98-477 5-365 (366)
126 3ke3_A Putative serine-pyruvat 100.0 3.5E-27 1.2E-31 237.0 24.4 332 89-476 5-375 (379)
127 3fsl_A Aromatic-amino-acid ami 100.0 2.1E-27 7.3E-32 239.6 22.2 340 97-474 27-397 (397)
128 3f0h_A Aminotransferase; RER07 100.0 3.9E-27 1.3E-31 235.8 23.9 320 113-476 30-373 (376)
129 3zrp_A Serine-pyruvate aminotr 100.0 3.8E-27 1.3E-31 236.2 23.7 317 113-476 13-362 (384)
130 3nnk_A Ureidoglycine-glyoxylat 100.0 1E-26 3.5E-31 235.5 25.0 319 113-476 24-389 (411)
131 3cai_A Possible aminotransfera 100.0 6.6E-26 2.2E-30 229.3 29.7 327 94-472 25-404 (406)
132 2z9v_A Aspartate aminotransfer 99.9 2.1E-26 7.1E-31 231.8 25.7 331 95-476 8-370 (392)
133 1svv_A Threonine aldolase; str 99.9 1.4E-26 4.7E-31 229.9 24.1 329 98-476 15-357 (359)
134 1yaa_A Aspartate aminotransfer 99.9 2.8E-27 9.5E-32 240.2 18.8 343 94-476 27-410 (412)
135 1uu1_A Histidinol-phosphate am 99.9 1E-26 3.5E-31 229.5 22.1 309 96-473 19-334 (335)
136 2huf_A Alanine glyoxylate amin 99.9 1.9E-26 6.6E-31 232.1 23.6 332 93-476 16-382 (393)
137 1ax4_A Tryptophanase; tryptoph 99.9 4.6E-26 1.6E-30 235.0 24.6 355 94-476 41-440 (467)
138 3isl_A Purine catabolism prote 99.9 6.5E-26 2.2E-30 229.9 25.1 324 110-476 15-389 (416)
139 2dkj_A Serine hydroxymethyltra 99.9 7.8E-26 2.7E-30 228.7 24.4 333 96-476 23-387 (407)
140 2yrr_A Aminotransferase, class 99.9 2.1E-26 7.3E-31 227.9 19.6 316 113-476 11-352 (353)
141 1iug_A Putative aspartate amin 99.9 8.4E-26 2.9E-30 223.8 22.0 313 113-476 12-347 (352)
142 2oqx_A Tryptophanase; lyase, p 99.9 2.7E-26 9.2E-31 236.8 18.9 346 95-476 40-441 (467)
143 4hvk_A Probable cysteine desul 99.9 4.9E-25 1.7E-29 220.3 27.2 327 97-476 2-372 (382)
144 3f6t_A Aspartate aminotransfer 99.9 4.7E-26 1.6E-30 238.6 19.8 354 96-476 99-524 (533)
145 1v72_A Aldolase; PLP-dependent 99.9 1.6E-25 5.4E-30 222.2 22.6 328 95-476 6-352 (356)
146 2ch1_A 3-hydroxykynurenine tra 99.9 2.4E-25 8.1E-30 224.4 23.3 318 113-476 29-382 (396)
147 3vax_A Putative uncharacterize 99.9 7.1E-26 2.4E-30 228.5 19.3 336 88-476 13-399 (400)
148 3mad_A Sphingosine-1-phosphate 99.9 8.1E-25 2.8E-29 228.6 26.2 324 112-476 107-468 (514)
149 4eb5_A Probable cysteine desul 99.9 9E-25 3.1E-29 218.8 25.5 327 97-476 2-372 (382)
150 3e9k_A Kynureninase; kynurenin 99.9 2.2E-25 7.5E-30 230.0 21.4 345 93-476 65-460 (465)
151 2rfv_A Methionine gamma-lyase; 99.9 7.7E-25 2.6E-29 221.3 23.6 315 113-473 38-396 (398)
152 2ez2_A Beta-tyrosinase, tyrosi 99.9 2.1E-24 7.2E-29 222.0 26.7 344 94-476 40-430 (456)
153 3a9z_A Selenocysteine lyase; P 99.9 6.5E-25 2.2E-29 224.0 22.2 346 93-476 16-427 (432)
154 3meb_A Aspartate aminotransfer 99.9 5.5E-25 1.9E-29 225.9 20.9 339 98-476 51-443 (448)
155 2oga_A Transaminase; PLP-depen 99.9 2.1E-24 7.1E-29 218.2 24.1 321 96-477 30-396 (399)
156 1cs1_A CGS, protein (cystathio 99.9 8.8E-24 3E-28 212.6 27.8 296 130-474 44-384 (386)
157 2vi8_A Serine hydroxymethyltra 99.9 8E-24 2.7E-28 213.8 24.8 333 96-476 24-386 (405)
158 3qhx_A Cystathionine gamma-syn 99.9 2.4E-23 8.2E-28 209.9 27.2 289 130-470 58-391 (392)
159 2cb1_A O-acetyl homoserine sul 99.9 3.7E-23 1.3E-27 210.0 28.7 305 109-472 29-411 (412)
160 1jg8_A L-ALLO-threonine aldola 99.9 1.8E-23 6.2E-28 206.9 25.3 331 97-476 4-345 (347)
161 3tcm_A Alanine aminotransferas 99.9 8.5E-24 2.9E-28 219.9 23.5 332 113-476 107-493 (500)
162 2bkw_A Alanine-glyoxylate amin 99.9 1.3E-23 4.4E-28 210.6 23.2 318 113-477 16-384 (385)
163 2zy4_A L-aspartate beta-decarb 99.9 6.7E-24 2.3E-28 222.5 21.4 351 98-476 106-521 (546)
164 3uwc_A Nucleotide-sugar aminot 99.9 3.3E-24 1.1E-28 214.4 18.3 315 108-476 9-370 (374)
165 7aat_A Aspartate aminotransfer 99.9 2.2E-23 7.6E-28 210.5 24.3 337 98-475 30-401 (401)
166 4eu1_A Mitochondrial aspartate 99.9 3.4E-24 1.2E-28 217.2 18.0 334 96-475 41-409 (409)
167 1gc0_A Methionine gamma-lyase; 99.9 1.2E-22 4E-27 205.3 27.5 295 130-473 57-397 (398)
168 1mdo_A ARNB aminotransferase; 99.9 5.5E-23 1.9E-27 206.9 24.7 312 114-476 19-385 (393)
169 3h7f_A Serine hydroxymethyltra 99.9 4.7E-23 1.6E-27 211.4 24.3 324 112-476 56-413 (447)
170 3lws_A Aromatic amino acid bet 99.9 1.3E-23 4.6E-28 208.7 18.7 336 96-474 3-356 (357)
171 3mc6_A Sphingosine-1-phosphate 99.9 4.3E-23 1.5E-27 214.6 22.9 323 112-476 75-436 (497)
172 1wyu_B Glycine dehydrogenase s 99.9 1.2E-22 4.1E-27 209.9 26.0 316 110-475 75-439 (474)
173 3pj0_A LMO0305 protein; struct 99.9 2.3E-23 7.8E-28 207.1 19.2 325 104-474 19-359 (359)
174 3ecd_A Serine hydroxymethyltra 99.9 3.4E-22 1.2E-26 203.0 27.4 330 98-476 34-396 (425)
175 3nyt_A Aminotransferase WBPE; 99.9 4.2E-23 1.4E-27 206.2 20.2 313 109-473 6-360 (367)
176 3ihj_A Alanine aminotransferas 99.9 5.7E-22 1.9E-26 206.0 29.2 337 114-476 103-492 (498)
177 3gbx_A Serine hydroxymethyltra 99.9 2.2E-23 7.4E-28 211.6 17.4 319 112-476 41-395 (420)
178 1e5e_A MGL, methionine gamma-l 99.9 2.9E-22 9.8E-27 202.9 24.7 286 135-476 59-394 (404)
179 2fnu_A Aminotransferase; prote 99.9 2.6E-22 8.8E-27 200.5 23.8 309 112-476 10-371 (375)
180 3acz_A Methionine gamma-lyase; 99.9 7.5E-22 2.6E-26 198.8 27.3 310 110-476 32-388 (389)
181 2aeu_A Hypothetical protein MJ 99.9 9.9E-23 3.4E-27 204.1 20.1 324 95-476 26-370 (374)
182 3frk_A QDTB; aminotransferase, 99.9 7.6E-23 2.6E-27 204.6 18.9 317 108-475 6-366 (373)
183 3ffr_A Phosphoserine aminotran 99.9 5.6E-22 1.9E-26 196.8 24.0 308 113-474 15-361 (362)
184 3ndn_A O-succinylhomoserine su 99.9 3.7E-22 1.3E-26 202.4 22.6 295 130-474 73-413 (414)
185 2qma_A Diaminobutyrate-pyruvat 99.9 1.4E-21 4.9E-26 203.1 27.2 349 93-477 98-496 (497)
186 3n0l_A Serine hydroxymethyltra 99.9 1.4E-21 4.7E-26 198.2 26.3 333 98-476 27-388 (417)
187 3dr4_A Putative perosamine syn 99.9 9.8E-23 3.3E-27 205.2 17.6 309 114-474 35-390 (391)
188 3k7y_A Aspartate aminotransfer 99.9 3.1E-22 1.1E-26 202.2 20.2 339 97-477 30-405 (405)
189 1pff_A Methionine gamma-lyase; 99.9 1.1E-21 3.6E-26 193.0 23.0 282 142-473 2-330 (331)
190 1b9h_A AHBA synthase, protein 99.9 2.5E-21 8.5E-26 194.6 25.6 312 114-476 16-387 (388)
191 2po3_A 4-dehydrase; external a 99.9 2.9E-21 9.7E-26 196.7 26.1 317 100-476 20-385 (424)
192 1ibj_A CBL, cystathionine beta 99.9 7.9E-22 2.7E-26 202.7 20.2 311 113-476 104-461 (464)
193 3nmy_A Xometc, cystathionine g 99.9 2.3E-21 7.7E-26 195.7 22.8 290 130-470 59-396 (400)
194 1o69_A Aminotransferase; struc 99.9 8.7E-21 3E-25 191.3 25.8 319 114-475 11-385 (394)
195 2c81_A Glutamine-2-deoxy-scyll 99.9 2.1E-20 7.2E-25 189.9 26.5 317 113-476 14-413 (418)
196 2ctz_A O-acetyl-L-homoserine s 99.9 9.8E-21 3.4E-25 192.6 23.4 290 130-474 50-420 (421)
197 1n8p_A Cystathionine gamma-lya 99.9 2.8E-20 9.5E-25 187.5 25.6 295 130-474 47-392 (393)
198 1qgn_A Protein (cystathionine 99.9 3E-20 1E-24 189.5 25.6 292 130-477 106-445 (445)
199 3cog_A Cystathionine gamma-lya 99.9 2.1E-20 7.2E-25 189.0 23.3 291 133-475 62-400 (403)
200 3b8x_A WBDK, pyridoxamine 5-ph 99.9 1.2E-19 4E-24 182.6 26.9 305 113-470 13-389 (390)
201 1w23_A Phosphoserine aminotran 99.9 1.4E-20 4.8E-25 186.9 19.7 309 113-476 14-359 (360)
202 2okj_A Glutamate decarboxylase 99.8 4.3E-19 1.5E-23 184.7 29.9 313 140-477 134-502 (504)
203 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.8 1.1E-19 3.6E-24 185.9 23.9 325 94-475 29-434 (437)
204 2c0r_A PSAT, phosphoserine ami 99.8 8.6E-20 3E-24 181.6 22.2 322 95-476 3-360 (362)
205 4h51_A Aspartate aminotransfer 99.8 1.3E-19 4.6E-24 183.2 22.7 321 115-476 65-416 (420)
206 2jis_A Cysteine sulfinic acid 99.8 6.9E-19 2.4E-23 183.6 28.5 315 139-477 149-515 (515)
207 3bwn_A AT1G70560, L-tryptophan 99.8 1.8E-20 6.3E-25 188.8 13.4 275 141-475 71-385 (391)
208 2dgk_A GAD-beta, GADB, glutama 99.8 4.1E-18 1.4E-22 174.9 29.5 327 113-476 54-433 (452)
209 2z67_A O-phosphoseryl-tRNA(SEC 99.8 7.9E-19 2.7E-23 180.4 23.7 301 139-474 134-455 (456)
210 2x3l_A ORN/Lys/Arg decarboxyla 99.8 4.4E-20 1.5E-24 189.1 14.3 287 136-476 55-352 (446)
211 2fq6_A Cystathionine beta-lyas 99.8 5.8E-19 2E-23 178.8 21.9 298 129-472 73-413 (415)
212 2fyf_A PSAT, phosphoserine ami 99.8 7.1E-19 2.4E-23 177.4 22.0 310 113-477 51-398 (398)
213 1rv3_A Serine hydroxymethyltra 99.8 2E-18 6.9E-23 178.6 21.5 335 98-475 46-429 (483)
214 3ri6_A O-acetylhomoserine sulf 99.8 4.7E-18 1.6E-22 172.7 22.5 290 130-474 74-429 (430)
215 2hox_A ALLIIN lyase 1; cystein 99.8 3.6E-19 1.2E-23 181.3 14.0 322 95-476 55-424 (427)
216 3hbx_A GAD 1, glutamate decarb 99.8 1.6E-17 5.4E-22 172.6 25.8 327 112-476 67-443 (502)
217 3ht4_A Aluminum resistance pro 99.8 8.2E-18 2.8E-22 171.0 21.6 293 113-437 36-345 (431)
218 3vp6_A Glutamate decarboxylase 99.8 1.2E-16 4E-21 166.4 29.3 313 139-476 136-504 (511)
219 2a7v_A Serine hydroxymethyltra 99.8 4.9E-17 1.7E-21 167.3 23.0 319 113-475 66-439 (490)
220 3ju7_A Putative PLP-dependent 99.8 8.2E-17 2.8E-21 161.2 24.0 314 113-475 14-373 (377)
221 1js3_A DDC;, DOPA decarboxylas 99.8 3.5E-16 1.2E-20 162.0 29.0 326 116-476 89-473 (486)
222 4e1o_A HDC, histidine decarbox 99.8 3.1E-16 1.1E-20 162.1 28.0 303 139-476 119-477 (481)
223 3k40_A Aromatic-L-amino-acid d 99.7 9.1E-16 3.1E-20 158.2 27.5 302 139-476 114-470 (475)
224 1wyu_A Glycine dehydrogenase ( 99.7 2.1E-16 7.3E-21 161.4 20.9 288 138-474 108-437 (438)
225 3e77_A Phosphoserine aminotran 99.7 4.7E-16 1.6E-20 154.6 19.8 321 112-476 23-374 (377)
226 3jzl_A Putative cystathionine 99.7 4.7E-15 1.6E-19 149.5 24.3 287 113-437 30-339 (409)
227 3qm2_A Phosphoserine aminotran 99.7 3.4E-16 1.2E-20 156.4 14.3 323 96-476 27-384 (386)
228 3i16_A Aluminum resistance pro 99.6 2.5E-14 8.6E-19 144.7 24.0 285 114-437 45-356 (427)
229 3m5u_A Phosphoserine aminotran 99.6 1.3E-14 4.5E-19 143.7 19.8 309 113-476 16-359 (361)
230 3hvy_A Cystathionine beta-lyas 99.6 2.4E-14 8.1E-19 144.9 21.6 284 113-436 45-355 (427)
231 1c4k_A Protein (ornithine deca 99.6 2.2E-14 7.4E-19 154.1 21.8 314 136-475 171-564 (730)
232 2vyc_A Biodegradative arginine 99.6 1.4E-13 4.7E-18 149.0 24.8 310 138-475 205-603 (755)
233 3n75_A LDC, lysine decarboxyla 99.4 3.4E-11 1.2E-15 128.3 23.3 312 137-473 194-556 (715)
234 3hl2_A O-phosphoseryl-tRNA(SEC 99.4 7.2E-11 2.5E-15 117.5 22.9 291 156-476 135-460 (501)
235 3bc8_A O-phosphoseryl-tRNA(SEC 99.3 1.6E-10 5.4E-15 116.4 20.8 308 141-475 101-441 (450)
236 3ou5_A Serine hydroxymethyltra 98.7 5.6E-07 1.9E-11 89.4 18.3 327 113-475 66-439 (490)
237 3hix_A ALR3790 protein; rhodan 53.9 15 0.00052 28.1 4.4 53 143-197 41-93 (106)
238 1tks_A 3,4-dihydroxy-2-butanon 49.8 16 0.00056 31.8 4.3 37 250-290 158-194 (204)
239 1gmx_A GLPE protein; transfera 48.5 22 0.00075 27.1 4.6 53 141-196 46-98 (108)
240 1k7c_A Rhamnogalacturonan acet 47.6 25 0.00085 31.1 5.5 53 237-289 111-167 (233)
241 2jtq_A Phage shock protein E; 45.9 59 0.002 23.2 6.5 51 141-194 27-78 (85)
242 3rcm_A TATD family hydrolase; 45.8 1.1E+02 0.0037 28.1 9.7 96 154-291 30-133 (287)
243 3mio_A DHBP synthase, 3,4-dihy 42.3 30 0.001 30.3 4.8 36 250-290 157-194 (206)
244 3gk5_A Uncharacterized rhodane 41.2 24 0.00083 27.0 3.8 54 141-198 43-96 (108)
245 2fsx_A RV0390, COG0607: rhodan 40.9 48 0.0016 26.9 5.8 41 154-196 80-120 (148)
246 3ij6_A Uncharacterized metal-d 40.3 2.2E+02 0.0076 26.2 13.6 50 236-291 112-161 (312)
247 3ilm_A ALR3790 protein; rhodan 40.3 25 0.00086 28.5 3.9 55 142-198 44-98 (141)
248 1tq1_A AT5G66040, senescence-a 36.8 26 0.00088 27.8 3.4 43 151-195 79-121 (129)
249 1g57_A DHBP synthase, 3,4-dihy 36.7 38 0.0013 29.9 4.6 36 250-290 166-201 (217)
250 3ovp_A Ribulose-phosphate 3-ep 36.7 1.9E+02 0.0064 25.5 9.4 37 254-291 137-175 (228)
251 1snn_A DHBP synthase, 3,4-dihy 34.7 37 0.0013 30.1 4.2 36 250-290 177-212 (227)
252 3qvs_A MIPS, MYO-inositol-1-ph 33.4 1.2E+02 0.0042 29.2 7.9 22 274-295 207-228 (392)
253 3rjt_A Lipolytic protein G-D-S 32.8 36 0.0012 28.9 4.0 57 233-289 112-172 (216)
254 1ivn_A Thioesterase I; hydrola 31.4 27 0.00094 29.3 2.9 55 234-289 82-137 (190)
255 3bzy_B ESCU; auto cleavage pro 31.4 27 0.00092 25.7 2.3 20 274-293 29-48 (83)
256 3inp_A D-ribulose-phosphate 3- 30.3 2.2E+02 0.0077 25.4 8.9 72 99-178 59-133 (246)
257 3hp4_A GDSL-esterase; psychrot 29.9 46 0.0016 27.6 4.1 53 236-289 88-141 (185)
258 1wv9_A Rhodanese homolog TT165 27.4 79 0.0027 23.1 4.6 38 155-195 54-91 (94)
259 1k4i_A 3,4-dihydroxy-2-butanon 27.0 65 0.0022 28.6 4.4 37 250-290 166-212 (233)
260 1vee_A Proline-rich protein fa 26.9 97 0.0033 24.4 5.3 49 143-193 61-111 (134)
261 2o1e_A YCDH; alpha-beta protei 26.8 3.8E+02 0.013 24.7 10.6 42 237-289 225-266 (312)
262 3p94_A GDSL-like lipase; serin 26.2 63 0.0021 27.1 4.3 56 234-289 97-159 (204)
263 3t7y_A YOP proteins translocat 26.2 36 0.0012 25.8 2.3 21 274-294 44-64 (97)
264 2vt1_B Surface presentation of 25.5 39 0.0013 25.4 2.3 21 274-294 29-49 (93)
265 1vko_A Inositol-3-phosphate sy 25.5 2.9E+02 0.01 27.6 9.2 22 274-295 306-327 (537)
266 3r45_C Holliday junction recog 25.4 73 0.0025 22.5 3.5 29 369-397 15-43 (81)
267 3mil_A Isoamyl acetate-hydroly 25.4 2.4E+02 0.0084 23.9 8.3 18 272-289 150-167 (240)
268 3c01_E Surface presentation of 24.8 40 0.0014 25.7 2.3 21 274-294 29-49 (98)
269 2o14_A Hypothetical protein YX 24.8 1.3E+02 0.0045 28.7 6.7 56 234-289 252-313 (375)
270 3kp1_E D-ornithine aminomutase 24.3 26 0.0009 27.5 1.2 65 365-440 14-78 (121)
271 1vhx_A Putative holliday junct 24.0 1E+02 0.0035 25.3 4.9 55 237-295 44-101 (150)
272 3foj_A Uncharacterized protein 23.4 72 0.0025 23.6 3.7 42 152-196 54-95 (100)
273 3g5j_A Putative ATP/GTP bindin 23.1 72 0.0024 24.9 3.8 53 140-195 75-128 (134)
274 1gcy_A Glucan 1,4-alpha-maltot 22.6 97 0.0033 31.2 5.5 31 270-300 91-121 (527)
275 2k0z_A Uncharacterized protein 22.6 2.4E+02 0.0084 21.0 7.6 44 151-197 53-96 (110)
276 3v7e_A Ribosome-associated pro 22.3 2.1E+02 0.0071 20.5 5.9 50 238-298 17-66 (82)
277 3irs_A Uncharacterized protein 21.8 2.6E+02 0.0089 25.3 8.0 50 237-291 108-157 (291)
278 2gwg_A 4-oxalomesaconate hydra 21.7 4.8E+02 0.016 24.1 10.8 52 237-291 125-178 (350)
279 1uar_A Rhodanese; sulfurtransf 21.7 84 0.0029 28.5 4.5 54 141-195 219-273 (285)
280 3aay_A Putative thiosulfate su 21.5 1.1E+02 0.0036 27.6 5.1 54 141-195 212-266 (277)
281 1t9k_A Probable methylthioribo 21.0 4.2E+02 0.014 25.0 9.2 39 251-291 227-267 (347)
282 1pq4_A Periplasmic binding pro 20.5 4.8E+02 0.016 23.6 10.5 124 115-290 142-265 (291)
283 3ctl_A D-allulose-6-phosphate 20.3 3.5E+02 0.012 23.7 8.1 57 115-178 46-105 (231)
284 3p8k_A Hydrolase, carbon-nitro 20.2 1.9E+02 0.0066 26.1 6.6 58 232-290 34-100 (281)
No 1
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=100.00 E-value=3.9e-83 Score=654.43 Aligned_cols=422 Identities=30% Similarity=0.475 Sum_probs=373.6
Q ss_pred CCCCCCHHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccc
Q 011777 51 PYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH 130 (477)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~ 130 (477)
++|||+|+++++++.+++++++.. ..|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|++++.|
T Consensus 21 ~iPGP~s~~l~~r~~~~~~~~~~~--~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~ 98 (456)
T 4atq_A 21 AFPGPKSQALAERRSAVVAAGVAS--GVPVYVEDADGGIIRDVDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTH 98 (456)
T ss_dssp SSSCHHHHHHHHHHHHHBCTTCCC--SCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSC
T ss_pred CCCChHHHHHHHHHHHhCCCCCCC--CCCCeEEeeecCEEEeCCCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhccC
Confidence 689999999999999999877544 358999999999999999999999999999999999999999999999999877
Q ss_pred cccc-cCChHHHHHHHHHHhhCCC-CCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCC-C
Q 011777 131 ATTI-YLHHAIADFAEALASKMPG-NLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNT-W 207 (477)
Q Consensus 131 ~~~~-~~~~~~~~l~~~La~~~~~-~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~-~ 207 (477)
.... .+++...+|+++|+++.|. ..++++|+||||||||.|||+||.+++|.+||+|+++|||++.++++.++... +
T Consensus 99 ~~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~ 178 (456)
T 4atq_A 99 TCFMVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPY 178 (456)
T ss_dssp CTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTT
T ss_pred cccCccCcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCcccc
Confidence 6543 3467888999999999986 46899999999999999999999999999999999999999999999887653 3
Q ss_pred CCCCC--CCCeeeecCCCCcCCCCCC-CHHHHHHHHHHHHh-ccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHH
Q 011777 208 KYPIP--QGEIHHVVNPDPYHGSFGS-DAARYAQDLQDHID-FGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRK 283 (477)
Q Consensus 208 ~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~le~~i~-~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~ 283 (477)
+.... ..++.+++.+++++..... +..++.+...+.++ ..+++++|+||+||+||++|+++|+++||++|+++|++
T Consensus 179 ~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~ 258 (456)
T 4atq_A 179 KTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKE 258 (456)
T ss_dssp TTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHH
T ss_pred ccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhh
Confidence 33332 2578888888877655432 23333333322222 33457899999999999999999999999999999999
Q ss_pred hCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHH
Q 011777 284 AGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLA 363 (477)
Q Consensus 284 ~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a 363 (477)
||++||+||||||||||| ++|+++++|+.|||+|++|++|||+|+|++++++++++.+....|++||++||++|+|+++
T Consensus 259 ~gillI~DEV~tG~GRtG-~~~a~e~~gv~PDivt~gK~lggg~P~~av~~~~~i~~~~~~~~~~~Tf~gnpla~aaala 337 (456)
T 4atq_A 259 KGIVFIADEVQSGFCRTG-EWFAVDHEGVVPDIITMAKGIAGGLPLSAITGRADLLDAVHPGGLGGTYGGNPVACAAALA 337 (456)
T ss_dssp HTCEEEEECTTTTTTTTS-SSSGGGGTTCCCSEEEECGGGGTTSSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHHH
T ss_pred cCCceEecccccccCCcc-ccccccccCCCCchhhhhhcccCcCCceeeEecHHHHhcccccCCCCCCCCChHHHHhhHH
Confidence 999999999999999999 8999999999999999999999999999999999999999888899999999999999999
Q ss_pred HHHhhchhhHHHHHHHHHHHHHHHHHHHHHhC-----CCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCc
Q 011777 364 VLRVIDKERRQAHCADVGSHLLGRLRTLQERH-----DIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGV 438 (477)
Q Consensus 364 ~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~-----~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv 438 (477)
+|++++++++.+++++++++++++|+++..++ +.+.+|||.|+|++++++.+. .+.|+......+.+.|+++||
T Consensus 338 ~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~-~~~~~~~~~~~v~~~~~~~Gv 416 (456)
T 4atq_A 338 AIDTMEQHDLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPG-SKEPNAELTKAVAAACLKEGV 416 (456)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTT-SCCBCHHHHHHHHHHHHHTTE
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEecCC-CCCcCHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999998876 568999999999999998653 456777778889999999999
Q ss_pred eeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 439 LVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 439 ~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
++.+++..+++|||.||+++|++|||+++++|+++++.
T Consensus 417 l~~~~g~~~~~irl~PpL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 417 IILTCGTYGNVIRLLPPLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp ECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 99988888899999999999999999999999999974
No 2
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=100.00 E-value=9.5e-79 Score=624.19 Aligned_cols=413 Identities=26% Similarity=0.411 Sum_probs=358.8
Q ss_pred HHHHHHhhhcCCCccc----cccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccc-
Q 011777 59 QVFQKRKQFLGPSIFH----YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT- 133 (477)
Q Consensus 59 ~~~~~~~~~~~~~~~~----~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~- 133 (477)
.+.+++++|.+..... ....|++|++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|++++.+...
T Consensus 26 ~~~~~~~~~~~h~~t~~~~~~~~~P~vi~rg~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~~~ 105 (473)
T 4e3q_A 26 SWEARAETYSLYGFTDMPSLHQRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAF 105 (473)
T ss_dssp SHHHHHHHHBCCSSCCHHHHHHHCCEEEEEEETTEEEETTCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCCCC
T ss_pred cHHHHHhhhcCCCCCChhhhccCCCEEEEeeecCEEEeCCCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhccccccc
Confidence 4667778887644322 12458999999999999999999999999999999999999999999999999765433
Q ss_pred -ccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc------cCCceEEEEccCccCCcccccccccCCC
Q 011777 134 -IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS------TGNLGMIALRNAYHGGSSGTIGLTALNT 206 (477)
Q Consensus 134 -~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~ 206 (477)
.+.++...+|+++|++..|.++++|+|+||||||||.|||+||.+ +++.+||+|+++|||.+.++++.++.+.
T Consensus 106 ~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~ 185 (473)
T 4e3q_A 106 FGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPY 185 (473)
T ss_dssp TTEEEHHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGG
T ss_pred ccccCHHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCcccccccccccc
Confidence 235788899999999999988999999999999999999999876 5678999999999999999999987653
Q ss_pred CCC-CCCCCCeeeecCCCCcCCCCCCC-HH----HHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHH
Q 011777 207 WKY-PIPQGEIHHVVNPDPYHGSFGSD-AA----RYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDI 280 (477)
Q Consensus 207 ~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l 280 (477)
.+. ..+.+++.+++.|+.++.....+ .. .+.+++++.+...+++++|+||+||+||++|+++|+++||++|+++
T Consensus 186 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~l 265 (473)
T 4e3q_A 186 NSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPI 265 (473)
T ss_dssp GGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHH
T ss_pred ccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHH
Confidence 322 23346888888888776544332 22 2456778887766677899999999999999999999999999999
Q ss_pred HHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhcc-------cccccCCC
Q 011777 281 VRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQ-------KIQFNTFG 352 (477)
Q Consensus 281 ~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~-------~~~~~t~~ 352 (477)
|++||++||+||||||||||| ++|+++++|+.||++|++|+++|| +|+|++++++++++.+.. ..|++||+
T Consensus 266 c~~~gilLI~DEV~tGfGRtG-~~fa~e~~gv~PDi~t~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~ 344 (473)
T 4e3q_A 266 LRKYDIPVISDEVICGFGRTG-NTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTAS 344 (473)
T ss_dssp HHHTTCCEEEECTTTSSSTTS-SSCHHHHTTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTT
T ss_pred hcccceEEeccCccccCCccc-chhHHHhcCCCCChHHhcccccCCCCCcccccccHHHHHHhccccccccccccCCCCC
Confidence 999999999999999999999 899999999999999999999998 899999999999987743 36899999
Q ss_pred CcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCcc---HHHHHHH
Q 011777 353 GNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPA---KAETAVL 429 (477)
Q Consensus 353 ~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~---~~~~~~~ 429 (477)
+||++|++++++|++++++++++++++++++|+++|+++. +++.+.++||.|+|++++++.+..++.+. ......+
T Consensus 345 Gnpla~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~-~~~~v~~vRG~Gl~~gielv~~~~~~~~~~~~~~~~~~~ 423 (473)
T 4e3q_A 345 GHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIA-ERPNIGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERI 423 (473)
T ss_dssp TCHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHT-TSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHH
T ss_pred CCcchhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHh-cCCCeeEEeecceEEEEEEecCccccccccccHHHHHHH
Confidence 9999999999999999999999999999999999999986 45778999999999999998877665552 2345678
Q ss_pred HHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 430 FEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 430 ~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
.+.|+++||++.+. ++.+||+||+++|++|||+++++|++++++
T Consensus 424 ~~~~~~~Gll~~~~---g~~i~l~PPL~it~~eid~~~~~l~~al~~ 467 (473)
T 4e3q_A 424 ANTCTDLGLICRPL---GQSVVLCPPFILTEAQMDEMFDKLEKALDK 467 (473)
T ss_dssp HHHHHHTTEECEEE---TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCcEEEec---CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999876 589999999999999999999999998865
No 3
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=100.00 E-value=5.9e-73 Score=576.60 Aligned_cols=392 Identities=23% Similarity=0.330 Sum_probs=337.0
Q ss_pred CCCHHHHHHHHhhhcCCCc---c-ccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc
Q 011777 54 GPSADQVFQKRKQFLGPSI---F-HYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ 129 (477)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~---~-~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~ 129 (477)
.|+|++++++++++++-+. . .+.+.|+++++|+|+||||+|||+||||.+|++++++||+||+|++|+.+|++++.
T Consensus 41 ~p~s~~~~~~a~~~~pgg~~~~~~~~~~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~ 120 (454)
T 4ao9_A 41 NPASQRQFEAQARYMPGANSRSVLFYAPFPLTIARGEGAALWDADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGI 120 (454)
T ss_dssp CHHHHHHHHHHTTTSGGGCSSGGGCCSSCCCEEEEEETTEEEETTCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCS
T ss_pred CcHhHHHHHHHhhhCCCCCCCCccccCCCCccEEEeecCEEEECCCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCC
Confidence 5788999999999986322 2 24456999999999999999999999999999999999999999999999998865
Q ss_pred ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777 130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY 209 (477)
Q Consensus 130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~ 209 (477)
+.. ..++...+++++|++++|. +++|+|+|||||||+.|||+||.+|+|++||+|+++|||++.+..+.+......
T Consensus 121 ~~~--~~~~~~~~lae~l~~~~p~-~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~- 196 (454)
T 4ao9_A 121 NLT--GHNLLEGRLARLICERFPQ-IEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVP- 196 (454)
T ss_dssp CCC--SEESSHHHHHHHHHHHSTT-CSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCC-
T ss_pred Ccc--CCcHHHHHHHHHHHHhCCC-CCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCC-
Confidence 432 3456678999999999985 789999999999999999999999999999999999999998877665422111
Q ss_pred CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777 210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI 289 (477)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI 289 (477)
.++... ++++ ++.+++++++. .+++++||+||++|++|+++|+++||++|+++|++||++||
T Consensus 197 ----~~~~~~--------p~nd-----~~~l~~~l~~~-~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI 258 (454)
T 4ao9_A 197 ----FDFLVL--------PYND-----AQTARAQIERH-GPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLV 258 (454)
T ss_dssp ----SEEEEE--------CTTC-----HHHHHHHHHHT-GGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEE
T ss_pred ----CCcccC--------CCch-----HHHHHHHHhhc-CCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEE
Confidence 122222 2332 57788888743 45799999999999999999999999999999999999999
Q ss_pred EcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhccc----ccccCCCCcHHHHHHHHHHH
Q 011777 290 ADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK----IQFNTFGGNPVCSAGGLAVL 365 (477)
Q Consensus 290 ~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~----~~~~t~~~~~~~~aaa~a~l 365 (477)
+||||| ||+| .+|+++++|+.||++|++|++|||+|+|++++++++++.+... .|++||++||++|+|++++|
T Consensus 259 ~DEV~t--GR~G-~~~a~e~~gv~PDi~t~gK~lggG~Piga~~~~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L 335 (454)
T 4ao9_A 259 FDEVMT--SRLA-PHGLANKLGIRSDLTTLGKYIGGGMSFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGL 335 (454)
T ss_dssp EECTTG--GGGS-TTCHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHH
T ss_pred EECCCc--CCCc-cccchhccCCCCcEEEeccccCCCCcceeeeeHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHH
Confidence 999999 4999 7888999999999999999999999999999999999988653 48899999999999999999
Q ss_pred HhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCC-----CCccHHHHHHHHHHHHHcCcee
Q 011777 366 RVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKE-----KTPAKAETAVLFEKLRELGVLV 440 (477)
Q Consensus 366 ~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~-----~~~~~~~~~~~~~~l~~~Gv~v 440 (477)
++++++++++++++++++|+++|+++.++++.+.+++|.|+|++++|+.++.. ...+......+...|+++||++
T Consensus 336 ~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~ 415 (454)
T 4ao9_A 336 TKLFTPEAAGALAERGEALRARLNALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYS 415 (454)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEEC
T ss_pred HHHhccChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEE
Confidence 99999999999999999999999999999999999999999999999754311 1223445567888999999999
Q ss_pred eccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 441 GKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 441 ~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
.|.+ ++.+++.+|++|||+++++|++++.+
T Consensus 416 ~p~~------~~~~s~~~T~~dId~~l~al~~~l~~ 445 (454)
T 4ao9_A 416 SPRG------FVVLSLPLTDADIDRYVAAIGSFIGG 445 (454)
T ss_dssp CTTC------EEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCC------CEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 8753 34567889999999999999999875
No 4
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=100.00 E-value=2.3e-68 Score=549.94 Aligned_cols=419 Identities=34% Similarity=0.507 Sum_probs=368.8
Q ss_pred CCCCCCHHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccc
Q 011777 51 PYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH 130 (477)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~ 130 (477)
+.++|++++++++.+++++.+.. ...|+++++|+|+||||.||++||||.+++++++|||+||+|++|+.+|++++.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~~~G~~v~d~~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~ 98 (453)
T 4ffc_A 21 PLPGPRSGALAERRRAAVSAGVG--STAPVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTH 98 (453)
T ss_dssp CSSCHHHHHHHHHHHHHBCTTTC--CSCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSC
T ss_pred CCCCCCHHHHHHHHHHhcCCCcC--CCCCceEEeeecCEEEeCCCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhccc
Confidence 46788999999999999976543 2568999999999999999999999999999999999999999999999998765
Q ss_pred cc-cccCChHHHHHHHHHHhhCCCC-CCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCC-CC
Q 011777 131 AT-TIYLHHAIADFAEALASKMPGN-LKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALN-TW 207 (477)
Q Consensus 131 ~~-~~~~~~~~~~l~~~La~~~~~~-~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~-~~ 207 (477)
.. ..+.++...+|+++|++.++.+ .++|+|+|||+|||+.|+|+++.++++++||+++++|||++.+++++++.. .+
T Consensus 99 ~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 178 (453)
T 4ffc_A 99 TCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPY 178 (453)
T ss_dssp CTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTT
T ss_pred cccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCccc
Confidence 43 3467888999999999999754 579999999999999999999998999999999999999999999988754 34
Q ss_pred CCCCCC--CCeeeecCCCCcCCCCCCCHHHHH----HHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHH
Q 011777 208 KYPIPQ--GEIHHVVNPDPYHGSFGSDAARYA----QDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIV 281 (477)
Q Consensus 208 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~ 281 (477)
+..+.+ .++..++.+.+++++++.+..... +.|++.+ +++++++||+||+++++|+++++++||++|+++|
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i---~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~ 255 (453)
T 4ffc_A 179 KSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQI---GAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWA 255 (453)
T ss_dssp TTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHT---CGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHH
T ss_pred ccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhc---CCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHH
Confidence 333322 478888888888877665543333 3344333 3467999999999999999999999999999999
Q ss_pred HHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHH
Q 011777 282 RKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGG 361 (477)
Q Consensus 282 ~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa 361 (477)
++||++||+||||+||||+| .+++++++++.||++||||++++|+|+||+++++++++.+....+++||++|+++++|+
T Consensus 256 ~~~~~llI~DEv~~g~g~~g-~~~a~~~~~~~pdi~t~sK~~~~G~~~G~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa 334 (453)
T 4ffc_A 256 SENGVVFIADEVQTGFARTG-AWFASEHEGIVPDIVTMAKGIAGGMPLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAAA 334 (453)
T ss_dssp HHHTCEEEEECTTTTTTTTS-SSSTHHHHTCCCSEEEECGGGGTTSSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHH
T ss_pred HHcCCEEEEecCccCCCccc-ccchhhhcCCCcchHhhhhhhcCCcCeEEEEECHHHHhhhcccCcCCCCCcCHHHHHHH
Confidence 99999999999999999999 68888999999999999999999999999999999999988778899999999999999
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceee
Q 011777 362 LAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVG 441 (477)
Q Consensus 362 ~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~ 441 (477)
+++|+.++++++.+++++++++++++|+++..+++.+..+++.|+|+++++.. ...+.|+......+.+.|+++||++.
T Consensus 335 ~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~Gv~v~ 413 (453)
T 4ffc_A 335 VAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIVK-PGTLEPDAALTKSIAAEALSQGVLIL 413 (453)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEETTEEEEEEBC-TTSCCBCHHHHHHHHHHHHHTTEECC
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeceEEEEEEec-CcccCCCHHHHHHHHHHHHhCCCEEe
Confidence 99999988888999999999999999999988899889999999999999975 33445666677889999999999999
Q ss_pred ccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 442 KGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 442 ~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
+++.+++++||+||+.+|+++|++++++|++++++
T Consensus 414 ~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 448 (453)
T 4ffc_A 414 TCGTFGNVIRLLPPLVIGDDLLDEGITALSDIIRA 448 (453)
T ss_dssp EECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 98777799999999999999999999999999864
No 5
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=100.00 E-value=3.6e-68 Score=548.26 Aligned_cols=422 Identities=32% Similarity=0.429 Sum_probs=367.6
Q ss_pred CCCCCCHHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccc
Q 011777 51 PYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH 130 (477)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~ 130 (477)
+.++|++++++++.+++++.+.. ...|+++++|+|+||||.||++||||.++++++++||+||+|++|+.+|++++.+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~ 95 (451)
T 3oks_A 18 AIPGPRSQALIDRKGTAVARGVG--TTMPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTH 95 (451)
T ss_dssp CSSCHHHHHHHHHHHHHBCTTBC--CSCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTCSC
T ss_pred CCCCCcHHHHHHHHHhhccCCcC--CCCCceEEEeecCEEEECCCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhccc
Confidence 57789999999999999977543 2468999999999999999999999999999999999999999999999998765
Q ss_pred cc-cccCChHHHHHHHHHHhhCCCC-CCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCC-CC
Q 011777 131 AT-TIYLHHAIADFAEALASKMPGN-LKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALN-TW 207 (477)
Q Consensus 131 ~~-~~~~~~~~~~l~~~La~~~~~~-~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~-~~ 207 (477)
.. ..+.++...+|+++|++.++.. .++|+|+|||+|||+.|+|+++.++++++||+++++|||++.+++++++.. .+
T Consensus 96 ~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~ 175 (451)
T 3oks_A 96 TCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPY 175 (451)
T ss_dssp CTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTT
T ss_pred ccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCccc
Confidence 43 3467888999999999999754 579999999999999999999998999999999999999999999988753 44
Q ss_pred CCCCCC--CCeeeecCCCCcCCCC-CCC----HHHHHHHHHHHHhc-cCCCCeeEEEecccCCCCCeeeCCchhHHHHHH
Q 011777 208 KYPIPQ--GEIHHVVNPDPYHGSF-GSD----AARYAQDLQDHIDF-GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYD 279 (477)
Q Consensus 208 ~~~~~~--~~~~~~~~~~~~~~~~-~~~----~~~~~~~le~~i~~-~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~ 279 (477)
+..+.+ .++..++.+.++++++ +.+ ....++.+++.++. .+++++++||+||+++++|+++++++||++|++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~ 255 (451)
T 3oks_A 176 KDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLD 255 (451)
T ss_dssp TTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHH
T ss_pred ccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHH
Confidence 433322 4777887776665532 111 22345555555542 234689999999999999999999999999999
Q ss_pred HHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHH
Q 011777 280 IVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSA 359 (477)
Q Consensus 280 l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~a 359 (477)
+|++||++||+||||+||||+| .+++++++++.||++||||++++|+|+|++++++++++.+....+.+||++|+++++
T Consensus 256 l~~~~g~~lI~DEv~~g~g~~g-~~~~~~~~~~~pdi~t~sK~l~~G~~iG~v~~~~~~~~~~~~~~~~~t~~~~~~~~a 334 (451)
T 3oks_A 256 WCRKNDVVFIADEVQTGFARTG-AMFACEHEGIDPDLIVTAKGIAGGLPLSAVTGRAEIMDSPHVSGLGGTYGGNPIACA 334 (451)
T ss_dssp HHHHTTCEEEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTSSCEEEEEEHHHHTCSCTTSBCCSSSSCHHHHH
T ss_pred HHHHcCCEEEEEecccCCCccc-cchhhhhcCCCCCeeeehhhhhCCcceEEEEECHHHHhhhcCCCcCCCCCCCHHHHH
Confidence 9999999999999999999999 688889999999999999999999999999999999999887788999999999999
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCce
Q 011777 360 GGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVL 439 (477)
Q Consensus 360 aa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 439 (477)
+++++|+.++++++.+++++++++++++|+++..+++.+..+++.|+|+++++.. ...+.|.......+.+.|+++||+
T Consensus 335 aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~Gv~ 413 (451)
T 3oks_A 335 AALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVK-AGTTEPDADLTKALCAGAHAAGVI 413 (451)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEBS-TTSCCBCHHHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEeeEEEEEEEec-CccCCCCHHHHHHHHHHHHhCCcE
Confidence 9999999988888999999999999999999988899889999999999999975 334446666778899999999999
Q ss_pred eeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 440 VGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 440 v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
+.+++.+++++||+||+.+|+++|++++++|++++++
T Consensus 414 v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 414 VLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp CEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred EecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 9998877899999999999999999999999999875
No 6
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=100.00 E-value=6.6e-68 Score=549.32 Aligned_cols=413 Identities=24% Similarity=0.385 Sum_probs=355.8
Q ss_pred HHHHHHHhhhcCCCccc---c-ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccc
Q 011777 58 DQVFQKRKQFLGPSIFH---Y-YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT 133 (477)
Q Consensus 58 ~~~~~~~~~~~~~~~~~---~-~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~ 133 (477)
..+.++.+++++..... + ...|+++++|+|+|+||.||++||||.+|++++++||+||+|++|+.+|++++.+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~ 91 (476)
T 3i5t_A 12 GAVGAAMRDHILLPAQEMAKLGKSAQPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASP 91 (476)
T ss_dssp -CHHHHHHHHBCCTTEEGGGTTTCCCCBEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCT
T ss_pred hHHHhhcccccccCcccccccccCCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCccc
Confidence 45677777787654322 1 1258999999999999999999999999999999999999999999999998766444
Q ss_pred -ccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc------cCCceEEEEccCccCCcccccccccCCC
Q 011777 134 -IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS------TGNLGMIALRNAYHGGSSGTIGLTALNT 206 (477)
Q Consensus 134 -~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~ 206 (477)
.+.++...+|+++|++++|.+.++|+|+|||+|||+.|+++++.+ +++++||+++++|||++.+++++++.+.
T Consensus 92 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 171 (476)
T 3i5t_A 92 WYMATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTG 171 (476)
T ss_dssp TTCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGG
T ss_pred CccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChh
Confidence 577899999999999999877899999999999999999999988 8899999999999999999999888766
Q ss_pred CCCCCC--CCCeeeecCCCCcCCCCCCCHHH----HHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHH
Q 011777 207 WKYPIP--QGEIHHVVNPDPYHGSFGSDAAR----YAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDI 280 (477)
Q Consensus 207 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l 280 (477)
++.... ..++.+++.|..+++ ++.+... ++++|+++++...++++++||+||++|++|+++++++||++|+++
T Consensus 172 ~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~l 250 (476)
T 3i5t_A 172 NWPNFDIAQDRISFLSSPNPRHA-GNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAI 250 (476)
T ss_dssp GCTTSCCCCTTEEEECCCCGGGC-TTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHH
T ss_pred hccccCCCCCCcEEeCCCccccc-CCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHH
Confidence 543332 357888888888877 6655433 367888888744446899999999999999999999999999999
Q ss_pred HHHhCcEEEEcCcccCccCCCCCCcccc-ccCCCcceeeecccccCc-cceEEEEeCHHHHHhhccc-------ccccCC
Q 011777 281 VRKAGGVCIADEVQTGFGRTGSHYWGFE-TQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQK-------IQFNTF 351 (477)
Q Consensus 281 ~~~~gillI~DEv~~gfgr~G~~~~~~~-~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~~-------~~~~t~ 351 (477)
|++||++||+||||+||||+| ++|+++ ++++.||++||||++++| +|+|++++++++++.+... .+++||
T Consensus 251 c~~~gillI~DEv~~g~gr~G-~~~~~~~~~~v~pdi~t~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~t~ 329 (476)
T 3i5t_A 251 CEKHDILYISDEVVTGFGRCG-EWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTY 329 (476)
T ss_dssp HHHTTCEEEEECTTTTTTTTS-SSCHHHHTTCCCCSEEEECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTT
T ss_pred HHHcCCEEEEEecccCCcccc-CceeeecccCCCcchhhhhhhhcCCCcCeEEEEECHHHHHHHhcCCcccccccccCCC
Confidence 999999999999999999999 788888 999999999999999999 9999999999999998753 677999
Q ss_pred CCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccH---HHHHH
Q 011777 352 GGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAK---AETAV 428 (477)
Q Consensus 352 ~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~---~~~~~ 428 (477)
++||++|+|++++|+.++++++.+++++++++++++|+++. +++.+..+++.|+|+++++..+..++.+.. .....
T Consensus 330 ~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~~v~~v~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~ 408 (476)
T 3i5t_A 330 SNQPVACAAALANIELMEREGIVDQAREMADYFAAALASLR-DLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLK 408 (476)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTT-TSTTEEEEEEETTEEEEEECCC-----CCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-cCCCeEEEEecCceeEEEEecCccccccccchhHHHHH
Confidence 99999999999999999888999999999999999999764 678889999999999999976543333322 13567
Q ss_pred HHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 429 LFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 429 ~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
+.+.|+++||++.+.+ +++||+||+++|+++|++++++|++++++
T Consensus 409 ~~~~l~~~Gv~v~~~g---~~iRi~p~l~~t~e~i~~~l~~l~~~l~~ 453 (476)
T 3i5t_A 409 IDERCFELGLIVRPLG---DLCVISPPLIISRAQIDEMVAIMRQAITE 453 (476)
T ss_dssp HHHHHHHTTEECEEET---TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEEecC---CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 8899999999999863 89999999999999999999999998864
No 7
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=100.00 E-value=2.1e-67 Score=544.73 Aligned_cols=415 Identities=26% Similarity=0.391 Sum_probs=351.3
Q ss_pred CHHHHHHHHhhhcCCCccc----cccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccc-
Q 011777 56 SADQVFQKRKQFLGPSIFH----YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH- 130 (477)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~----~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~- 130 (477)
..+++.++.+++++..... ....|+++++|+|+|+||.|||+||||.+|+++++|||+||+|++|+.+|++++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~ 90 (472)
T 3hmu_A 11 PTAELQALDAAHHLHPFSANNALGEEGTRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYY 90 (472)
T ss_dssp CHHHHHHHHHHHEECTTEEHHHHHHHCCEEEEEEEBTEEEETTCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCC
T ss_pred CHHHHHHHHHhhccCCcccccccccCCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcccc
Confidence 3567888888887654322 11368999999999999999999999999999999999999999999999998652
Q ss_pred -cccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc------cCCceEEEEccCccCCccccccccc
Q 011777 131 -ATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS------TGNLGMIALRNAYHGGSSGTIGLTA 203 (477)
Q Consensus 131 -~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~ 203 (477)
....+.++...+|+++|++++|.+.++|+|+|||+|||+.|+|+++.+ +++++||+++++|||++.+++++++
T Consensus 91 ~~~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~ 170 (472)
T 3hmu_A 91 NTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGG 170 (472)
T ss_dssp CSSSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSC
T ss_pred ccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccC
Confidence 233567889999999999999887889999999999999999999987 4788999999999999999998887
Q ss_pred CCCCCCCC-CCCCeeeecCCCCcC-CCCCCCHH----HHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHH
Q 011777 204 LNTWKYPI-PQGEIHHVVNPDPYH-GSFGSDAA----RYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLV 277 (477)
Q Consensus 204 ~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l 277 (477)
.+.++..+ ...++.+++.|..++ +++ .+.. .++++|+++++...++++++||+||++|++|.++++++||++|
T Consensus 171 ~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l 249 (472)
T 3hmu_A 171 MAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEI 249 (472)
T ss_dssp CHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHH
T ss_pred ChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHH
Confidence 65432111 335777777776555 222 2322 2367788888644446899999999999999999999999999
Q ss_pred HHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhc--ccccccCCCCc
Q 011777 278 YDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMA--QKIQFNTFGGN 354 (477)
Q Consensus 278 ~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~--~~~~~~t~~~~ 354 (477)
+++|++||++||+||||+||||+| ++|+++++++.||++||||++++| +|+|++++++++++.+. ...+++||++|
T Consensus 250 ~~l~~~~gillI~DEv~~gfgr~G-~~~a~~~~~v~pdi~t~sK~l~gg~~plG~v~~~~~i~~~~~~~~~~~~~t~~~n 328 (472)
T 3hmu_A 250 QRICDKYDILLIADEVICGFGRTG-NWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGH 328 (472)
T ss_dssp HHHHHHTTCEEEEECTTTTTTTTS-SSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHTTSCBCCCCTTTTC
T ss_pred HHHHHHcCCEEEEEccccCCcccC-ccchhHHhCCCCceeeechhhhcCCcceEEEEECHHHHHhcccCCccccCCCCCC
Confidence 999999999999999999999999 788889999999999999999987 89999999999999883 23678899999
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHH-HHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCcc----HHHHHHH
Q 011777 355 PVCSAGGLAVLRVIDKERRQAHCA-DVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPA----KAETAVL 429 (477)
Q Consensus 355 ~~~~aaa~a~l~~l~~~~~~~~~~-~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~----~~~~~~~ 429 (477)
|++|+|++++|+.++++++.++++ +++++++++|+++. +++.+..+++.|+|+++++..+..++.+. ......+
T Consensus 329 p~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~~v~~vr~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 407 (472)
T 3hmu_A 329 PVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALT-DHPLVGEAKIVGMMASIALTPNKASRAKFASEPGTIGYIC 407 (472)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGGG-GSTTEEEEEEETTEEEEEECSCGGGTCCBSSCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-cCCCeEEEEecCceEEEEEecCccccccccchhHHHHHHH
Confidence 999999999999998889999999 99999999997764 57888999999999999997543333221 2345678
Q ss_pred HHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 430 FEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 430 ~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
.+.|+++||++.+++ +++||+||+++|++||++++++|++++++
T Consensus 408 ~~~l~~~Gv~v~~~g---~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 451 (472)
T 3hmu_A 408 RERCFANNLIMRHVG---DRMIISPPLVITPAEIDEMFVRIRKSLDE 451 (472)
T ss_dssp HHHHHHTTBCCEEET---TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCcEEEecC---CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 899999999999874 89999999999999999999999998864
No 8
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=100.00 E-value=1.1e-64 Score=522.70 Aligned_cols=419 Identities=31% Similarity=0.526 Sum_probs=360.5
Q ss_pred CHHHHHHHHhhhcCCCcccc-ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccc
Q 011777 56 SADQVFQKRKQFLGPSIFHY-YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTI 134 (477)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~ 134 (477)
.++++.++..+++++++..+ ...|+++++|+|+||||.||++||||.+|++++++||+||+|++|+.++++++.+....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~ 87 (452)
T 3n5m_A 8 QTDELLAKDEQYVWHGMRPFSPNSTTVGAKAEGCWVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSYFPMS 87 (452)
T ss_dssp HHHHHHHHHHHHBCCTTSCSCGGGCCEEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCCCCTT
T ss_pred cHHHHHHHhhhhccccccccccCCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCCcccc
Confidence 35678888889887643222 24689999999999999999999999999999999999999999999999987664445
Q ss_pred cCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc---c---CCceEEEEccCccCCcccccccccCCCCC
Q 011777 135 YLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS---T---GNLGMIALRNAYHGGSSGTIGLTALNTWK 208 (477)
Q Consensus 135 ~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~---~---~~~~ii~~~~~yhG~~~~~~~~~~~~~~~ 208 (477)
+.++...+++++|+++++.+.+ |+|++||+||++.|+++++.+ + ++++||+++++|||++..++++++...++
T Consensus 88 ~~~~~~~~la~~l~~~~~~~~~-v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 166 (452)
T 3n5m_A 88 QSHEPAIKLAEKLNEWLGGEYV-IFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRR 166 (452)
T ss_dssp SEEHHHHHHHHHHHHHHTSCEE-EEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGT
T ss_pred cCCHHHHHHHHHHHHhCCCCce-EEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhc
Confidence 6788899999999999987766 999999999999999999876 5 78899999999999999998888766544
Q ss_pred CCCC--CCCeeeecCCCCcCCCCCCCH----HHHHHHHHHHHhccCCCCeeEEEeccc-CCCCCeeeCCchhHHHHHHHH
Q 011777 209 YPIP--QGEIHHVVNPDPYHGSFGSDA----ARYAQDLQDHIDFGTSGKVAGFIAETI-QGVGGAVELAPGYLKLVYDIV 281 (477)
Q Consensus 209 ~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~le~~i~~~~~~~~a~vi~epi-~~~~G~~~~~~~~l~~l~~l~ 281 (477)
.... ..++.+++.|+.++++++++. ..++++|+++++..+++++++||+||+ +| +|.++|+++||++|+++|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~ 245 (452)
T 3n5m_A 167 YQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETC 245 (452)
T ss_dssp TTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHH
T ss_pred cccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHH
Confidence 3322 257788888888888887532 224688888886333467999999999 89 999999999999999999
Q ss_pred HHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhcc------cccccCCCCc
Q 011777 282 RKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQ------KIQFNTFGGN 354 (477)
Q Consensus 282 ~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~------~~~~~t~~~~ 354 (477)
++||++||+||||+||||+| .+++++++++.||++||||++++| +|+|++++++++++.+.. ..+++||++|
T Consensus 246 ~~~~~llI~DEv~~g~g~~g-~~~~~~~~~~~~di~t~sK~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~ 324 (452)
T 3n5m_A 246 QKHGALLISDEVICGFGRTG-KAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGN 324 (452)
T ss_dssp HHHTCEEEEECTTTTTTTTS-SSSGGGGTTCCCSEEEECGGGGTTSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSSTTC
T ss_pred HHcCCEEEEecchhCCCccc-ccchhhhcCCCCCEEeecccccCCCcceEEEEECHHHHHHHhhccCCCCccccCCCCCC
Confidence 99999999999999999999 688889999999999999999999 999999999999998843 2477899999
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCcc-HHHHHHHHHHH
Q 011777 355 PVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPA-KAETAVLFEKL 433 (477)
Q Consensus 355 ~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~-~~~~~~~~~~l 433 (477)
|++++|++++|+.++++++.+++++++++++++|+++..+++.+..+++.|+|+++++..+..+..+. ......+.+.|
T Consensus 325 ~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l 404 (452)
T 3n5m_A 325 PAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNAC 404 (452)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSSCEEEEEEEETTTTEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCCcccCCCCHHHHHHHHHHH
Confidence 99999999999998888899999999999999999998888888999999999999997544333332 33456788999
Q ss_pred HHcCceeeccCC----CCCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777 434 RELGVLVGKGGL----HGNVFRIKPPMCFTKDDADFLVDALDYSMSKL 477 (477)
Q Consensus 434 ~~~Gv~v~~~~~----~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l 477 (477)
+++||++.+++. .++++||+||+.+|+++|++++++|+++++++
T Consensus 405 ~~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 452 (452)
T 3n5m_A 405 KEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAMERI 452 (452)
T ss_dssp HHTTEECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHTTC
T ss_pred HHCCcEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhC
Confidence 999999998753 25899999999999999999999999998764
No 9
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=100.00 E-value=1.3e-64 Score=523.08 Aligned_cols=416 Identities=26% Similarity=0.416 Sum_probs=353.8
Q ss_pred HHHHHHhhhcCCCccc------cccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccc--
Q 011777 59 QVFQKRKQFLGPSIFH------YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH-- 130 (477)
Q Consensus 59 ~~~~~~~~~~~~~~~~------~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~-- 130 (477)
++.++.+++++..... ..+.|+++++|+|+||||.||++||||.+|++++++||+||+|++|+.+|++++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~ 87 (460)
T 3gju_A 8 ELNAWDRDHFFHPSTHMGTHARGESPTRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYH 87 (460)
T ss_dssp CHHHHHHHHCCCTTSCHHHHHHTCSCCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHhhhcccccCccccccccccCCCceEEEEeeccEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccc
Confidence 4666677777654322 11245999999999999999999999999999999999999999999999988653
Q ss_pred cccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc------cCCceEEEEccCccCCcccccccccC
Q 011777 131 ATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS------TGNLGMIALRNAYHGGSSGTIGLTAL 204 (477)
Q Consensus 131 ~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~ 204 (477)
....+.++...+|+++|+++++.+.++|+|+|||+||++.|+++++.+ +++++||+++++|||++.+++++++.
T Consensus 88 ~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~ 167 (460)
T 3gju_A 88 AYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGL 167 (460)
T ss_dssp CCTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCC
T ss_pred cccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCC
Confidence 233467788999999999998878889999999999999999999876 57899999999999999999998876
Q ss_pred CCCCCCCCC--CCeeeecCCCCcCCCC-CCCHH----HHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHH
Q 011777 205 NTWKYPIPQ--GEIHHVVNPDPYHGSF-GSDAA----RYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLV 277 (477)
Q Consensus 205 ~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~----~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l 277 (477)
..++..+.. .++.+++.|..++++. +.+.. .++++|+++++..+++++++||+||++|++|.++++++||++|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l 247 (460)
T 3gju_A 168 DLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKI 247 (460)
T ss_dssp GGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHH
T ss_pred cccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHH
Confidence 655443332 5778888777776543 22322 2367888888744446899999999999999999999999999
Q ss_pred HHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhc-------cccccc
Q 011777 278 YDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMA-------QKIQFN 349 (477)
Q Consensus 278 ~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~-------~~~~~~ 349 (477)
+++|++||++||+||||+||||+| ++++++++++.||++||||++++| +|+|++++++++++.+. ...+++
T Consensus 248 ~~l~~~~~~llI~DEv~~g~gr~g-~~~~~~~~~~~pdi~t~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~ 326 (460)
T 3gju_A 248 QAVLKKYDVLLVADEVVTGFGRLG-TMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGW 326 (460)
T ss_dssp HHHHHHTTCEEEEECTTTTTTTTS-SSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCCC
T ss_pred HHHHHHcCCEEEEeccccCCCccc-ccchHhhcCCCCCeeeeehhhcCCCCCeEEEEECHHHHHHHhcccccccccccCC
Confidence 999999999999999999999999 788889999999999999999998 79999999999999884 346789
Q ss_pred CCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCc---cHHHH
Q 011777 350 TFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTP---AKAET 426 (477)
Q Consensus 350 t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~---~~~~~ 426 (477)
||++||++++|++++|+.++++++.+++++++++++++|.+...+++.+..+++.|+|+++++..+...+.+ .....
T Consensus 327 t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (460)
T 3gju_A 327 TYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGMLAAVEFVADKDDRVFFDASQKIG 406 (460)
T ss_dssp TTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeeEEEEEEEccCccccccccchHHHH
Confidence 999999999999999999888889999999999999999888888888999999999999999754332222 22345
Q ss_pred HHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 427 AVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 427 ~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
..+.+.|+++||++.+++ .++++||+||+++|+++|++++++|++++++
T Consensus 407 ~~~~~~l~~~Gv~v~~~~-~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 455 (460)
T 3gju_A 407 PQVATALAASGVIGRAMP-QGDILGFAPPLCLTREQADIVVSKTADAVKS 455 (460)
T ss_dssp HHHHHHHHHTTEECEECS-SSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCeEEecCC-CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 678899999999999876 4589999999999999999999999998864
No 10
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=100.00 E-value=2e-66 Score=565.67 Aligned_cols=396 Identities=22% Similarity=0.267 Sum_probs=327.4
Q ss_pred CceeEEeeecc--EEEeCCCC----EEEeecCCcccccCCCC-CHHHHHHHHHHHhhcccccc-ccCChHHHHHHHHHHh
Q 011777 78 KPLNIVEGKMQ--YLFDENGR----RYLDAFAGIVTVSCGHC-HPDVLNAIFEQSKLLQHATT-IYLHHAIADFAEALAS 149 (477)
Q Consensus 78 ~p~~~~~g~G~--~~~d~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Av~~~l~~~~~~~~-~~~~~~~~~l~~~La~ 149 (477)
.|++|++|+|. ||||.||| +|||+++|+|++++||+ ||+|++|+.+|++++.|... .+.++...+|+++|++
T Consensus 356 ~p~~i~~a~G~g~~l~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~h~~~~~~~~~~~~~Lae~L~~ 435 (831)
T 4a0g_A 356 TVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFPENVYEPALKCAELLLD 435 (831)
T ss_dssp GCEEEEEEETTEEEEEEHHHHSEEEEEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHSSCCCTTEECHHHHHHHHHHHH
T ss_pred CCeEEEEeeccceEEEECCCCccchheeeecccHhhcCCCCCCCHHHHHHHHHHHhhcccccccccCCHHHHHHHHHHHH
Confidence 47899999995 99999999 99999999999999999 99999999999999877643 3568889999999999
Q ss_pred hCCCC-CCEEEEeCChHHHHHHHHHHH-Hhcc--------------CCceEEEEccCccCCcccccccccCCCCCC----
Q 011777 150 KMPGN-LKVVYFVNSGTEANELAMLMA-RLST--------------GNLGMIALRNAYHGGSSGTIGLTALNTWKY---- 209 (477)
Q Consensus 150 ~~~~~-~~~v~~~~sGseA~~~Al~~a-r~~~--------------~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~---- 209 (477)
++|.+ +++|+|+||||||||.|||+| |.|+ +|.+||+++++|||.+.+++++++...++.
T Consensus 436 ~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~ 515 (831)
T 4a0g_A 436 GVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQ 515 (831)
T ss_dssp TTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTC
T ss_pred hCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeeeeccCcccccccccc
Confidence 99865 789999999999999999999 5553 467899999999999999999988654432
Q ss_pred CC--------CC------CCeeeecCCCCcCCCC------CCC-------------HHHHHHHHHHHHhc----cCCCCe
Q 011777 210 PI--------PQ------GEIHHVVNPDPYHGSF------GSD-------------AARYAQDLQDHIDF----GTSGKV 252 (477)
Q Consensus 210 ~~--------~~------~~~~~~~~~~~~~~~~------~~~-------------~~~~~~~le~~i~~----~~~~~~ 252 (477)
+. +. .++.+++.|+.++... ++. ...|.++|+++|+. .+++++
T Consensus 516 ~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~i 595 (831)
T 4a0g_A 516 PWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHV 595 (831)
T ss_dssp TTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEE
T ss_pred ccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcE
Confidence 10 00 2445566776665431 110 12356778887763 235789
Q ss_pred eEEEeccc-CCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceE
Q 011777 253 AGFIAETI-QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLG 330 (477)
Q Consensus 253 a~vi~epi-~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig 330 (477)
++||+||+ ||++|+++++++||++|+++|++||++||+||||+||||+| ++|+++++|+.||++||||+++|| +|+|
T Consensus 596 aavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG-~~fa~e~~gv~PDiitlsK~L~gG~~Plg 674 (831)
T 4a0g_A 596 GALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLG-VETTTELLGCKPDIACFAKLLTGGMVPLA 674 (831)
T ss_dssp EEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTS-BSSTHHHHSSCCSEEEECGGGGTTSSCCE
T ss_pred EEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCC-CchhhHhcCCCCcEEEEecccccCccCcE
Confidence 99999997 99999999999999999999999999999999999999999 789999999999999999999999 7999
Q ss_pred EEEeCHHHHHhhccc------ccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH----HHHHHHHhCCCcee
Q 011777 331 AVVTTPEIANVMAQK------IQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLG----RLRTLQERHDIIGD 400 (477)
Q Consensus 331 ~v~~~~~~~~~~~~~------~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~----~L~~l~~~~~~~~~ 400 (477)
++++++++++.+... .|++||++||++|++++++|++++++++.+++.++++++++ .+.+...+++.+.+
T Consensus 675 av~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~ 754 (831)
T 4a0g_A 675 VTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQR 754 (831)
T ss_dssp EEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSCHHHHHHHHHSTTEEE
T ss_pred EEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcee
Confidence 999999999988653 38899999999999999999999888888888776666543 45555567899999
Q ss_pred eeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777 401 VRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL 477 (477)
Q Consensus 401 v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l 477 (477)
+++.|+|+++++..+...+.+.......+.+.|+++||++.+. +++|||+||+.+|++||++++++|+++++++
T Consensus 755 vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p~---g~~lrl~pp~~~t~e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 755 VVVIGTLFALELKADASNSGYASLYAKSLLIMLREDGIFTRPL---GNVIYLMCGPCTSPEICRRLLTKLYKRLGEF 828 (831)
T ss_dssp EEEETTEEEEEEC---------CHHHHHHHHHHHHTTEECCCB---TTEEEEECCTTCCHHHHHHHHHHHHHHHTTT
T ss_pred EeecccEEEEEEecCccccccchHHHHHHHHHHHHCCcEEEec---CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999997653222223345677899999999999875 5899999999999999999999999998764
No 11
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=100.00 E-value=2e-64 Score=521.70 Aligned_cols=414 Identities=25% Similarity=0.378 Sum_probs=337.6
Q ss_pred HHHHHHHhhhcCCCccc---c-ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc--cc
Q 011777 58 DQVFQKRKQFLGPSIFH---Y-YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ--HA 131 (477)
Q Consensus 58 ~~~~~~~~~~~~~~~~~---~-~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~--~~ 131 (477)
+++.++.+++++..... + ...|+++++|+|+||||.||++||||.+|+++++|||+||+|++|+.++++++. +.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~ 87 (459)
T 4a6r_A 8 SQWRELDAAHHLHPFTDTASLNQAGARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNT 87 (459)
T ss_dssp --------------------------CCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCT
T ss_pred HHHHHHhhhhccCCccccccccccCCeeEEEeecCEEEECCCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhcccccc
Confidence 34556666666543221 1 235899999999999999999999999999999999999999999999999865 22
Q ss_pred ccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc------cCCceEEEEccCccCCcccccccccCC
Q 011777 132 TTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS------TGNLGMIALRNAYHGGSSGTIGLTALN 205 (477)
Q Consensus 132 ~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~ 205 (477)
...+.++...+|+++|+++++.+.++|+|+|||+||++.|+++++.+ +++++||+++++|||++.+++++++.+
T Consensus 88 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~ 167 (459)
T 4a6r_A 88 FFKTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMK 167 (459)
T ss_dssp TSSSCCHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCT
T ss_pred ccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCCh
Confidence 33567888999999999999888899999999999999999999886 478899999999999999999988776
Q ss_pred CCCCCCC--CCCeeeecCCCCcC-CCCCCCHHH----HHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHH
Q 011777 206 TWKYPIP--QGEIHHVVNPDPYH-GSFGSDAAR----YAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVY 278 (477)
Q Consensus 206 ~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~----~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~ 278 (477)
.++..+. ..++.+++.|..++ +++ .|... ++++|+++++...++++++||+||+++++|.++++++||++|+
T Consensus 168 ~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~ 246 (459)
T 4a6r_A 168 YMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIE 246 (459)
T ss_dssp TTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHH
T ss_pred hhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHH
Confidence 6543332 24777777776555 222 23222 3678888887444467999999999999999999999999999
Q ss_pred HHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhc---ccccccCCCCc
Q 011777 279 DIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMA---QKIQFNTFGGN 354 (477)
Q Consensus 279 ~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~---~~~~~~t~~~~ 354 (477)
++|++||++||+||||+||||+| .+++++++++.||++||||++++| +|+|++++++++++.+. ...+++||++|
T Consensus 247 ~l~~~~~~llI~DEv~~g~gr~G-~~~~~~~~~~~pdi~t~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t~~~~ 325 (459)
T 4a6r_A 247 RICRKYDVLLVADEVICGFGRTG-EWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGH 325 (459)
T ss_dssp HHHHHTTCEEEEECTTTTTTTTS-SSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHHHHCSC
T ss_pred HHHHHcCCEEEEeccccCCCccc-ccchHhhcCCCCCeeehhhhhcCCCCCccceeeCHHHHHHhhcCCCcccCCCCCCC
Confidence 99999999999999999999999 688889999999999999999987 89999999999999887 45677899999
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHH-HHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCC---ccHHHHHHHH
Q 011777 355 PVCSAGGLAVLRVIDKERRQAHCA-DVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKT---PAKAETAVLF 430 (477)
Q Consensus 355 ~~~~aaa~a~l~~l~~~~~~~~~~-~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~---~~~~~~~~~~ 430 (477)
|++++|++++|+.++++++.++++ +++++++++|.+...+++.+..+++.|+|+++++..+..++. +.......+.
T Consensus 326 ~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (459)
T 4a6r_A 326 PVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCR 405 (459)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECSBTTTTBCCSSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCccccccccchHHHHHHHH
Confidence 999999999999988889999999 999999999944445678889999999999999975433322 2334467788
Q ss_pred HHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 431 EKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 431 ~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
+.|+++||++.+++ +++||+||+++|++++++++++|++++++
T Consensus 406 ~~l~~~Gv~v~~~g---~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 448 (459)
T 4a6r_A 406 DIFFRNNLIMRACG---DHIVSAPPLVMTRAEVDEMLAVAERCLEE 448 (459)
T ss_dssp HHHHHTTEECEEET---TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCeEEecCC---CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999874 89999999999999999999999998864
No 12
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=100.00 E-value=2.6e-64 Score=519.71 Aligned_cols=403 Identities=24% Similarity=0.329 Sum_probs=342.5
Q ss_pred CCCHHHHHHHHhhhcCCCcccc---ccCceeEEeeeccEEEeC-CCC--EEEeecCCcccccCCCCCHHHHHHHHHHHhh
Q 011777 54 GPSADQVFQKRKQFLGPSIFHY---YQKPLNIVEGKMQYLFDE-NGR--RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKL 127 (477)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~---~~~p~~~~~g~G~~~~d~-dG~--~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~ 127 (477)
+.+.++++++.++++++.+... ...|+++++|+|+|+||. ||| +||||.+|++++++||+||+|++|+.+|+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~d~~dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~ 106 (457)
T 3tfu_A 27 GLTPEQIIAVDGAHLWHPYSSIGREAVSPVVAVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRV 106 (457)
T ss_dssp CCCHHHHHHHHHHHBCCTTCCSSCCSSCCEEEEEEEBTEEEEEETTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhcCcccccccccCCCCceEEeeecCEEEEccCCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHh
Confidence 3556789999999987654322 335899999999999999 999 9999999999999999999999999999998
Q ss_pred ccccc-cccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc------cCCceEEEEccCccCCcccccc
Q 011777 128 LQHAT-TIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS------TGNLGMIALRNAYHGGSSGTIG 200 (477)
Q Consensus 128 ~~~~~-~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~------~~~~~ii~~~~~yhG~~~~~~~ 200 (477)
+.+.. ..+.++...+|+++|+++++.+.++|+|+|||+|||+.|+|+++.+ +++++||+++++|||++.++++
T Consensus 107 ~~~~~~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~ 186 (457)
T 3tfu_A 107 MNHVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMS 186 (457)
T ss_dssp CSCCCSSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHT
T ss_pred ccCccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhc
Confidence 76654 4567888999999999999877889999999999999999999987 7888999999999999999988
Q ss_pred ccc-CCCCCCCCC--CCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecc-cCCCCCeeeCCchhHHH
Q 011777 201 LTA-LNTWKYPIP--QGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAET-IQGVGGAVELAPGYLKL 276 (477)
Q Consensus 201 ~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~ep-i~~~~G~~~~~~~~l~~ 276 (477)
+++ ...++..+. ..++..++.|.. .+. ...+++|+++++.. ++++++||+|| +||++|+++++++||++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~---~~d~~~le~~l~~~-~~~~aavi~ep~~~~~~G~~~~~~~~l~~ 259 (457)
T 3tfu_A 187 ICDPHGGMHSLWTDVLAAQVFAPQVPR---DYD---PAYSAAFEAQLAQH-AGELAAVVVEPVVQGAGGMRFHDPRYLHD 259 (457)
T ss_dssp TSCCC----------CCCCEEECCCCS---SCC---HHHHHHHHHHHHHH-GGGEEEEEECSSEECTTTCEECCTHHHHH
T ss_pred ccCCcccccccccCCCCCceEecCCCc---ccC---HHHHHHHHHHHHhC-CCCEEEEEEeCCCcCCCCcccCCHHHHHH
Confidence 854 233332222 135555554432 111 22367888888632 35799999999 99999999999999999
Q ss_pred HHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhc---cc--ccccC
Q 011777 277 VYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMA---QK--IQFNT 350 (477)
Q Consensus 277 l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~---~~--~~~~t 350 (477)
|+++|++||++||+||||+||||+| .+++++++++.||++||||+++|| +|+|++++++++++.+. .. .+++|
T Consensus 260 l~~l~~~~gillI~DEv~~g~gr~G-~~~a~~~~~~~pdiit~sK~l~gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~t 338 (457)
T 3tfu_A 260 LRDICRRYEVLLIFDEIATGFGRTG-ALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPT 338 (457)
T ss_dssp HHHHHHHHTCEEEEECTTTTTTTTS-SSSTHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHHSSSCSCCCCCT
T ss_pred HHHHHHHcCCEEEEEcCccCCcccc-chhHhHhcCCCceEEEEChhhhCCCcceEEEEEcHHHHHHhhccCCCceeEecC
Confidence 9999999999999999999999999 788889999999999999999998 69999999999999884 22 67899
Q ss_pred CCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHH
Q 011777 351 FGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLF 430 (477)
Q Consensus 351 ~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~ 430 (477)
|++||++|++++++|+.++++++.+++++++++++++|+++. +++.+..+++.|+|+++++..+. ...++.
T Consensus 339 ~~~n~~a~aaa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~~v~~vr~~G~~~~i~l~~~~--------~~~~~~ 409 (457)
T 3tfu_A 339 FMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTAR-ALPAVTDVRVCGAIGVIECDRPV--------DLAVAT 409 (457)
T ss_dssp TTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGG-GSTTEEEEEECSSCEEEEESSCC--------CHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-cCCCeeeeecCCeEEEEEECCcc--------cHHHHH
Confidence 999999999999999998888899999999999999999875 67778899999999999985321 145788
Q ss_pred HHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 431 EKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 431 ~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
+.|+++||++.+. ++++||+||+++|++||++++++|++++++
T Consensus 410 ~~l~~~Gv~v~~~---~~~lRi~p~~~~t~eei~~~l~~L~~~l~~ 452 (457)
T 3tfu_A 410 PAALDRGVWLRPF---RNLVYAMPPYICTPAEITQITSAMVEVARL 452 (457)
T ss_dssp HHHHHTTEECCCB---TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCeEEEec---CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999875 589999999999999999999999999875
No 13
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=100.00 E-value=5.8e-64 Score=516.61 Aligned_cols=412 Identities=27% Similarity=0.410 Sum_probs=333.8
Q ss_pred HHHHHHHhhhcCCCcc---ccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccc-cc
Q 011777 58 DQVFQKRKQFLGPSIF---HYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA-TT 133 (477)
Q Consensus 58 ~~~~~~~~~~~~~~~~---~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~-~~ 133 (477)
+++.++.+++++.... .+...|+++++|+|+||||.||++||||.++++++++||+||+|++|+.++++++.+. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~ 82 (448)
T 3dod_A 3 HDLIEKSKKHLWLPFTQMKDYDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLL 82 (448)
T ss_dssp CHHHHHHHHHBCCTTCCHHHHHHSCCEEEEEEBTEEEETTSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCCCS
T ss_pred hHHHHhhhhcccccccccccccCCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCcccc
Confidence 3577778888874432 1234689999999999999999999999999999999999999999999999987553 33
Q ss_pred ccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc---cC---CceEEEEccCccCCcccccccccCCCC
Q 011777 134 IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS---TG---NLGMIALRNAYHGGSSGTIGLTALNTW 207 (477)
Q Consensus 134 ~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~---~~---~~~ii~~~~~yhG~~~~~~~~~~~~~~ 207 (477)
.+.++...+++++|+++++.+.++|+|+|||+||++.|+++++.+ +| +++||+++++|||++..++++++...+
T Consensus 83 ~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 162 (448)
T 3dod_A 83 GMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELF 162 (448)
T ss_dssp SSEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC-------------------
T ss_pred ccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccc
Confidence 466788999999999999877889999999999999999999987 77 899999999999999999988876554
Q ss_pred CCCCCC--CCeeeecCCCCcCCCCCCCHHH----HHHHHHHHHhccCCCCeeEEEecccC-CCCCeeeCCchhHHHHHHH
Q 011777 208 KYPIPQ--GEIHHVVNPDPYHGSFGSDAAR----YAQDLQDHIDFGTSGKVAGFIAETIQ-GVGGAVELAPGYLKLVYDI 280 (477)
Q Consensus 208 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~le~~i~~~~~~~~a~vi~epi~-~~~G~~~~~~~~l~~l~~l 280 (477)
+..+.+ .++..++.++.++++ +.+... .+++|+++++. +++++++||+||++ +++|.++++++||++|+++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~le~~l~~-~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l 240 (448)
T 3dod_A 163 HHVYGPLMFESYKAPIPYVYRSE-SGDPDECRDQCLRELAQLLEE-HHEEIAALSIESMVQGASGMIVMPEGYLAGVREL 240 (448)
T ss_dssp ----------CEEECCCCCTTSS-SCCHHHHHHHHHHHHHHHHHH-HGGGEEEEEEESSEESTTTCEECCTTHHHHHHHH
T ss_pred cccccCCCCCceEeCCCccccCC-ccchhhhhHHHHHHHHHHHHh-CCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHH
Confidence 433322 467788888888877 443322 36778888862 23578999999998 9999999999999999999
Q ss_pred HHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhcc-------cccccCCC
Q 011777 281 VRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQ-------KIQFNTFG 352 (477)
Q Consensus 281 ~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~-------~~~~~t~~ 352 (477)
|++||++||+||||+||||+| .+++++++++.||++||||++++| +|+|++++++++++.+.. ..+++||+
T Consensus 241 ~~~~~~~lI~DEv~~g~g~~g-~~~a~~~~~~~~di~t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~ 319 (448)
T 3dod_A 241 CTTYDVLMIVDEVATGFGRTG-KMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYT 319 (448)
T ss_dssp HHHTTCEEEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTTT
T ss_pred HHHhCCEEEEeccccCCCccc-chhhhhhcCCCCCEEEecccccCCcCceEEEEECHHHHHHhhhccccCCcccccCCCC
Confidence 999999999999999999999 678889999999999999999999 599999999999999876 56789999
Q ss_pred CcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHH---HHHHH
Q 011777 353 GNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKA---ETAVL 429 (477)
Q Consensus 353 ~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~---~~~~~ 429 (477)
+||++++|++++|+.++++++.+++++++++++++|.+ ..+++.+..+++.|+|+++++..+...+.+... ....+
T Consensus 320 ~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (448)
T 3dod_A 320 GNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQD-LHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKV 398 (448)
T ss_dssp TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-HTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHH
T ss_pred cCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-HhcCCCeEEEEeeeEEEEEEEccCcccccccchhhHHHHHH
Confidence 99999999999999988888999999999999999999 667788889999999999999754333222211 13578
Q ss_pred HHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 430 FEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 430 ~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
.+.|+++||++.++ ++++||+|++.+|+++|++++++|++++++
T Consensus 399 ~~~l~~~Gv~~~~~---~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 442 (448)
T 3dod_A 399 SLKMRELGMLTRPL---GDVIAFLPPLASTAEELSEMVAIMKQAIHE 442 (448)
T ss_dssp HHHHHHTTEECCEE---TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCcEEecc---CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 89999999999986 489999999999999999999999998864
No 14
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=100.00 E-value=1.5e-60 Score=489.22 Aligned_cols=408 Identities=25% Similarity=0.361 Sum_probs=335.3
Q ss_pred CCCHHHHHHHHhhhcCCCcc---ccc-----cCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHH
Q 011777 54 GPSADQVFQKRKQFLGPSIF---HYY-----QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQS 125 (477)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~---~~~-----~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l 125 (477)
.|++++++++.+++++.+.. ..+ ..|+++++|+|+|+||.||++||||.+++++++|||+||+|++|+.+++
T Consensus 5 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~ 84 (434)
T 3l44_A 5 FTKSEALHKEALEHIVGGVNSPSRSFKAVGGGAPIAMERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITTAA 84 (434)
T ss_dssp CHHHHHHHHHHHHHBGGGCSSGGGSSGGGTCSCCCCEEEEEBTEEEETTCCEEEECCGGGTTCSSCBTCHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHhhCCCCcCccccccccccCCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHH
Confidence 46789999999999875431 111 4689999999999999999999999999999999999999999999999
Q ss_pred hhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCC
Q 011777 126 KLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALN 205 (477)
Q Consensus 126 ~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~ 205 (477)
++.. ...|+++...+|+++|++.++ +.++|+|+|||+||++.|+++++.++++++||+++++|||++..++..++..
T Consensus 85 ~~~~--~~~~~~~~~~~l~~~la~~~~-~~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~ 161 (434)
T 3l44_A 85 ENGV--LYGTPTALEVKFAKMLKEAMP-ALDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSG 161 (434)
T ss_dssp HHCS--CCSSCCHHHHHHHHHHHHHCT-TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC----
T ss_pred HhCc--CCCCCCHHHHHHHHHHHHhCC-CCCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCc
Confidence 8743 234678889999999999998 5789999999999999999999988899999999999999999888877643
Q ss_pred CCCCCCCC-CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHh
Q 011777 206 TWKYPIPQ-GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKA 284 (477)
Q Consensus 206 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~ 284 (477)
......+. .++.....+.....++++ +++|+++++.. ++++++|++||+++++|.++++++|+++|+++|++|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~~le~~l~~~-~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~ 235 (434)
T 3l44_A 162 PSTLGTPDSAGVPQSIAQEVITVPFNN-----VETLKEALDKW-GHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEA 235 (434)
T ss_dssp ---CCCBSSTTCCHHHHTTEEEECTTC-----HHHHHHHHHHH-GGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTT
T ss_pred ccccCCCCcCCCCCcCCCceEecCccc-----HHHHHHHHHhC-CCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHc
Confidence 32221111 111100011111222322 57888888632 257899999999999999999999999999999999
Q ss_pred CcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcc---cccccCCCCcHHHHHHH
Q 011777 285 GGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQ---KIQFNTFGGNPVCSAGG 361 (477)
Q Consensus 285 gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~---~~~~~t~~~~~~~~aaa 361 (477)
|++||+||||+|| |+| .+++++++++.||++||||++++|+|+|++++++++++.+.. ..+++||++|+++++++
T Consensus 236 ~illI~DEv~~g~-~~g-~~~~~~~~~~~~di~t~sK~~~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa 313 (434)
T 3l44_A 236 GALVIYDEVITAF-RFM-YGGAQDLLGVTPDLTALGKVIGGGLPIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASG 313 (434)
T ss_dssp TCEEEEECTTTTT-TSS-SSCHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHH
T ss_pred CCEEEEeccccce-ecc-ccHHHHHcCCCCCeeehhhhhcCCcCeeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHH
Confidence 9999999999999 998 677788999999999999999999999999999999998865 34778999999999999
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCC-----CCccHHHHHHHHHHHHHc
Q 011777 362 LAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKE-----KTPAKAETAVLFEKLREL 436 (477)
Q Consensus 362 ~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~-----~~~~~~~~~~~~~~l~~~ 436 (477)
+++|+.++++++.+++++++++++++|+++..+++.+..+++.|+|+++++...... ..++......+.+.|+++
T Consensus 314 ~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 393 (434)
T 3l44_A 314 IACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQE 393 (434)
T ss_dssp HHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHC
Confidence 999999888889999999999999999999888888888999999999998532110 013344557788999999
Q ss_pred CceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 437 GVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 437 Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
||++.+++ .+.+|+ ++.+|++|+++++++|++++++
T Consensus 394 Gv~v~~~~--~~~~rl--~~~~t~e~i~~~l~~l~~~l~~ 429 (434)
T 3l44_A 394 GVNLAPSK--YEAWFL--TTEHTKEDIEYTIEAVGRAFAA 429 (434)
T ss_dssp TEECCSST--TCCEEC--CTTCCHHHHHHHHHHHHHHHHH
T ss_pred CeEEeecC--CCcEEE--ecccCHHHHHHHHHHHHHHHHH
Confidence 99999875 356777 6899999999999999998864
No 15
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=100.00 E-value=4.1e-60 Score=486.60 Aligned_cols=413 Identities=31% Similarity=0.462 Sum_probs=347.5
Q ss_pred HHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccc-ccc
Q 011777 57 ADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHAT-TIY 135 (477)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~-~~~ 135 (477)
.++++++.+++++.+... ..|+++++|+|+|+||.||++||||.++.+++++||+||+|++++.+++++..+.. ..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~ 83 (439)
T 3dxv_A 6 KALYDRDGAAIGNLQKLR--FFPLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSA 83 (439)
T ss_dssp CCHHHHHHHHBCGGGCCC--SSCCEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCSCSCSSSS
T ss_pred HHHHHHHHHHhccCccCC--CCCceEEEeeeCEEEeCCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcccccc
Confidence 357888888888765433 36899999999999999999999999999999999999999999999998865443 456
Q ss_pred CChHHHHHHHHHHhhCCCCC-CEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCC--CCCCCC
Q 011777 136 LHHAIADFAEALASKMPGNL-KVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNT--WKYPIP 212 (477)
Q Consensus 136 ~~~~~~~l~~~La~~~~~~~-~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~--~~~~~~ 212 (477)
.++...+++++|+++++.+. ++++|++||+||++.|+++++.++++++||+++++|||.+..++.+++... ++..+.
T Consensus 84 ~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 163 (439)
T 3dxv_A 84 SNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKAD 163 (439)
T ss_dssp EEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------
T ss_pred CCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccC
Confidence 77889999999999998767 799999999999999999998888999999999999999998888776543 332221
Q ss_pred C--CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEE
Q 011777 213 Q--GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIA 290 (477)
Q Consensus 213 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~ 290 (477)
+ .++..++.++.+.. .+....+++|+++++..+.+++++|++||+++++|.+.++++|+++|+++|++||++||+
T Consensus 164 ~~~~~~~~~~~~~~~~~---~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~ 240 (439)
T 3dxv_A 164 GLILLPYPDPYRPYRND---PTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVC 240 (439)
T ss_dssp CEEEECCCCSSSCBTTB---TTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEE
T ss_pred CCCCCcEEcCCCccccc---ccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 1 12233333322211 111124688888885334568999999999999999999999999999999999999999
Q ss_pred cCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch
Q 011777 291 DEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK 370 (477)
Q Consensus 291 DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~ 370 (477)
||+|+|||++| .++.++++++.||++||||++++|+|+|++++++++++.+....+.+|| +|++++++++++|+.+++
T Consensus 241 DE~~~g~g~~g-~~~~~~~~~~~~di~s~sK~~~~G~riG~~~~~~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~ 318 (439)
T 3dxv_A 241 DEVKVGLARSG-RLHCFEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCASAFAMQTLH-GNPISAAAGLAVLETIDR 318 (439)
T ss_dssp ECTTTCTTTTS-SSSGGGGTTCCCSEEEECGGGGTTSCCEEEEEEHHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHHH
T ss_pred eccccCCCcCc-hhhHHHhcCCCCCEEEEcchhcCCcceEEEEECHHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHHh
Confidence 99999999999 6788899999999999999999999999999999999988877778999 999999999999998888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEE
Q 011777 371 ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVF 450 (477)
Q Consensus 371 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~i 450 (477)
+++.+++++++++++++|.++..+++.+..+++.|+|+++++..+...+.|.......+.+.|+++||++.+++..++++
T Consensus 319 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~i 398 (439)
T 3dxv_A 319 DDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVL 398 (439)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEESTTSCEE
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecCCCCCEE
Confidence 88999999999999999999988888888999999999999876544444556667789999999999999987667999
Q ss_pred EEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 451 RIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 451 Ri~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
||+|++.+|++++++++++|++++++
T Consensus 399 Ri~~~~~~t~e~i~~~l~~l~~~l~~ 424 (439)
T 3dxv_A 399 EFTPPLTITETDIHKALDLLDRAFSE 424 (439)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999865
No 16
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=100.00 E-value=5.7e-60 Score=484.60 Aligned_cols=418 Identities=32% Similarity=0.507 Sum_probs=349.4
Q ss_pred CHHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccccc
Q 011777 56 SADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIY 135 (477)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~ 135 (477)
++.+++++..+++++....+ .|+++.+|+|+++||.||++||||.++.+++++||+||+|++|+.+++++..+....|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~ 82 (433)
T 1zod_A 5 DDATFWRNARHHLVRYGGTF--EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEM 82 (433)
T ss_dssp TCHHHHHHHHHHCCCCSSCC--CSSCCCEEEBTEEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTC
T ss_pred hhHHHHHHHHHhhccccccc--CCceEEEeecCEEEeCCCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCccccccc
Confidence 45788888888876543222 5889999999999999999999999999999999999999999999998765444456
Q ss_pred CChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCC-CC
Q 011777 136 LHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIP-QG 214 (477)
Q Consensus 136 ~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~-~~ 214 (477)
.++...+++++|+++++.+.++|+|++||+||++.|+++++.++++++||+++++|||.+..+++.++...+....+ ..
T Consensus 83 ~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~ 162 (433)
T 1zod_A 83 LSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAV 162 (433)
T ss_dssp CCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCT
T ss_pred CCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCC
Confidence 77888999999999998777899999999999999999988777888999999999999988887765432221111 24
Q ss_pred CeeeecCCCCcCCCCCCC----HHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEE
Q 011777 215 EIHHVVNPDPYHGSFGSD----AARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIA 290 (477)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~----~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~ 290 (477)
++..++.|..++.+++++ ....+++|+++++....+++++|++||+++++|.++++++++++|+++|++||++||+
T Consensus 163 ~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~ 242 (433)
T 1zod_A 163 GSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLIL 242 (433)
T ss_dssp TEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEE
T ss_pred CceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEE
Confidence 777887777777666531 2234688888887433357899999999999998899999999999999999999999
Q ss_pred cCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccc--cccCCCCcHHHHHHHHHHHHhh
Q 011777 291 DEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKI--QFNTFGGNPVCSAGGLAVLRVI 368 (477)
Q Consensus 291 DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~--~~~t~~~~~~~~aaa~a~l~~l 368 (477)
||||+|||++| .+++++.+++.||++||||++++|+|+|++++++++++.+.... +++|+++|+++++++.++|+.+
T Consensus 243 DEv~~~~g~~g-~~~~~~~~~~~~di~s~sK~~~~G~~ig~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~ 321 (433)
T 1zod_A 243 DEAQTGVGRTG-TMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVV 321 (433)
T ss_dssp ECTTTTTTTTS-SSSTHHHHTCCCSEEEECHHHHTTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHH
T ss_pred eccccCCCcCc-hHhHHhhcCCCCCEEEecccccCCCCeeEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 99999999999 67777888999999999999999999999999999998886533 4489999999999999999988
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCC-
Q 011777 369 DKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHG- 447 (477)
Q Consensus 369 ~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~- 447 (477)
+++++.+++++++++++++|+++..+++.+..+++.|+|+++++..+...+.++......+.+.|+++||++.+++.++
T Consensus 322 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~ 401 (433)
T 1zod_A 322 QRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGM 401 (433)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTTS
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEeccCCCCC
Confidence 8788999999999999999999876777777889999999998864321111212235678888999999999986555
Q ss_pred -CEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 448 -NVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 448 -~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
+++||+|++.+|++++++++++|++++++
T Consensus 402 ~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~ 431 (433)
T 1zod_A 402 GGVFRIAPPLTVSEDEIDLGLSLLGQAIER 431 (433)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCcCCCHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999998865
No 17
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=100.00 E-value=1.9e-60 Score=487.73 Aligned_cols=408 Identities=23% Similarity=0.327 Sum_probs=337.6
Q ss_pred CCCHHHHHHHHhhhcCCCcc---cc----ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHh
Q 011777 54 GPSADQVFQKRKQFLGPSIF---HY----YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSK 126 (477)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~---~~----~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~ 126 (477)
.|+|++++++.+++++.+.. .. ...|+++++|+|+++||.|||+||||.+++++++|||+||+|++|+.++++
T Consensus 4 ~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~ 83 (429)
T 3k28_A 4 FDKSIAAFEEAQDLMPGGVNSPVRAFKSVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAE 83 (429)
T ss_dssp CHHHHHHHHHHTTTSGGGSSSGGGGCGGGTCCCCCEEEEEBTEEEETTCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHhhcCCCcCcccccccccCCCCceEEEeecCEEEECCCCEEEECCCChhhcccCCCCHHHHHHHHHHHh
Confidence 46789999999999975432 22 256899999999999999999999999999999999999999999999998
Q ss_pred hccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCC
Q 011777 127 LLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNT 206 (477)
Q Consensus 127 ~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~ 206 (477)
++.+ ..++++...+|+++|+++++ +.++|+|+|||+||++.|+++++.++++++||+++++|||++..++..++...
T Consensus 84 ~~~~--~~~~~~~~~~l~~~la~~~~-~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~ 160 (429)
T 3k28_A 84 RGTS--FGAPTEIENKLAKLVIERVP-SIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGV 160 (429)
T ss_dssp HCSC--CSSCCHHHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC
T ss_pred hCcC--cCCCCHHHHHHHHHHHHhCC-CCCEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcc
Confidence 8543 24678889999999999987 57899999999999999999999888999999999999999998887766433
Q ss_pred CCCCCCC-CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhC
Q 011777 207 WKYPIPQ-GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAG 285 (477)
Q Consensus 207 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g 285 (477)
.....+. .++.....+.....++++ +++++++++.. ++++++|++||+++++|.+.++++||++|+++|++||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~~le~~l~~~-~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~ 234 (429)
T 3k28_A 161 ATLGLPDSPGVPEGVAKNTITVAYND-----LESVKYAFEQF-GDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNG 234 (429)
T ss_dssp -----CCCTTCCHHHHTTEEEEETTC-----HHHHHHHHHHH-GGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHT
T ss_pred cccCCCCcCCCCCcccCceeecCCCC-----HHHHHHHHHhC-CCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcC
Confidence 2222221 111100001111122322 57888888632 3578999999999999999999999999999999999
Q ss_pred cEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhccc---ccccCCCCcHHHHHHHH
Q 011777 286 GVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK---IQFNTFGGNPVCSAGGL 362 (477)
Q Consensus 286 illI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~---~~~~t~~~~~~~~aaa~ 362 (477)
++||+||+|+|| ++| .+++++++++.||++||||++++|+|+|++++++++++.+... .+++||++|++++++++
T Consensus 235 ~~li~DEv~~g~-~~g-~~~~~~~~~~~~di~t~sK~~~~G~~iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~ 312 (429)
T 3k28_A 235 ALLIFDEVMTGF-RVA-YNCGQGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGY 312 (429)
T ss_dssp CEEEEECTTTTT-TSS-TTHHHHHHTCCCSEEEECGGGGTTSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHH
T ss_pred CEEEEecccccc-ccC-cchHHHHhCCCCceehhhhhhcCCCCeEEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHH
Confidence 999999999999 998 6777888999999999999999999999999999999888642 47789999999999999
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCC-----CCCccHHHHHHHHHHHHHcC
Q 011777 363 AVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRK-----EKTPAKAETAVLFEKLRELG 437 (477)
Q Consensus 363 a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~-----~~~~~~~~~~~~~~~l~~~G 437 (477)
++|+.++ +++.+++++++++++++|+++..+++.+..+++.|+++++++..+.. .+.++......+.+.|+++|
T Consensus 313 aal~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 391 (429)
T 3k28_A 313 ETLVQLT-PESYVEFERKAEMLEAGLRKAAEKHGIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQG 391 (429)
T ss_dssp HHHHTCC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEeeccEEEEEEecCCcccccccccccHHHHHHHHHHHHHCC
Confidence 9999887 78999999999999999999988888888999999999998854321 11244455678889999999
Q ss_pred ceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777 438 VLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL 477 (477)
Q Consensus 438 v~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l 477 (477)
|++.+++ .+.+|+ ++.+|++|+++++++|+++++++
T Consensus 392 v~v~~~~--~~~~r~--~~~~t~e~i~~~l~~l~~~l~~~ 427 (429)
T 3k28_A 392 VFLPPSQ--FEGLFL--STVHSDADIEATIAAAEIAMSKL 427 (429)
T ss_dssp EECCSST--TSCBCC--CTTCCHHHHHHHHHHHHHHHHTC
T ss_pred eEEecCC--CCCEEE--ECCCCHHHHHHHHHHHHHHHHHH
Confidence 9999875 455676 68999999999999999998753
No 18
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=100.00 E-value=5.3e-60 Score=484.40 Aligned_cols=407 Identities=23% Similarity=0.302 Sum_probs=326.4
Q ss_pred CHHHHHHHHhhhcCCCccc---c----ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhc
Q 011777 56 SADQVFQKRKQFLGPSIFH---Y----YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLL 128 (477)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~---~----~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~ 128 (477)
++.+++++.+++++.+... . ...|+++++|+|+|+||.||++||||.++++++++||+||+|++|+.+|++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~ 85 (429)
T 4e77_A 6 KSENLYAQAQQLIPGGVNSPVRAFTGVGGIPLFIERADGAYLFDVDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERG 85 (429)
T ss_dssp HHHHHHHHHHHHSGGGCSSGGGGTTTTCSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHhhcCCCcCcccccccccCCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhC
Confidence 6789999999998754321 1 24689999999999999999999999999999999999999999999999875
Q ss_pred cccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCC
Q 011777 129 QHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWK 208 (477)
Q Consensus 129 ~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~ 208 (477)
.+ ..++++...+|+++|++.++ +.++++|+|||+||++.|+++++.++++++||+++++|||.+...+...+.....
T Consensus 86 ~~--~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 162 (429)
T 4e77_A 86 LS--FGAPTEMEVKMAQLVTDLVP-TMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALT 162 (429)
T ss_dssp SC--CSSCCHHHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC---------------
T ss_pred cc--cCCCCHHHHHHHHHHHhhCC-CCCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccc
Confidence 43 23678889999999999998 5789999999999999999999988999999999999999998766554322211
Q ss_pred CCCCC-CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcE
Q 011777 209 YPIPQ-GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGV 287 (477)
Q Consensus 209 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gil 287 (477)
...+. .++.....+.....++++ +++|+++++.. ++++++|++||+++++|.+.++++|+++|+++|++||++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~d-----~~~le~~l~~~-~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~l 236 (429)
T 4e77_A 163 LGQPNSPGVPTDFAKHTLTCTYND-----LASVRQAFEQY-PQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGAL 236 (429)
T ss_dssp ---CCCTTSCGGGGTTEEEECTTC-----HHHHHHHHHHS-TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCE
T ss_pred cCCCCcCCCCCccCCceeecCCCC-----HHHHHHHHHhc-CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence 11111 122111111222223332 58888888742 357999999999999999999999999999999999999
Q ss_pred EEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhccc---ccccCCCCcHHHHHHHHHH
Q 011777 288 CIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK---IQFNTFGGNPVCSAGGLAV 364 (477)
Q Consensus 288 lI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~---~~~~t~~~~~~~~aaa~a~ 364 (477)
||+||||+|| |+| .++.++++++.||++||||++++|+|+|++++++++++.+... .+++||++|+++++++.++
T Consensus 237 li~DEv~~g~-r~g-~~~~~~~~~~~pdi~t~sK~~~~G~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aa 314 (429)
T 4e77_A 237 LIIDEVMTGF-RVA-LAGAQDYYHVIPDLTCLGKIIGGGMPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFAC 314 (429)
T ss_dssp EEEEETTTBT-TTB-TTCHHHHTTCCCSEEEEEGGGGTTSCCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHH
T ss_pred EEEeccccCc-ccC-cchHHHhcCCCCCeeeecccccCCCCeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHH
Confidence 9999999999 998 6777889999999999999999999999999999999988753 4778999999999999999
Q ss_pred HHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCC------CCccHHHHHHHHHHHHHcCc
Q 011777 365 LRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKE------KTPAKAETAVLFEKLRELGV 438 (477)
Q Consensus 365 l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~------~~~~~~~~~~~~~~l~~~Gv 438 (477)
|+.++++++.+++++++++++++|+++..+++.+..+++.|+|+++++..+... ..++......+.+.|+++||
T Consensus 315 l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 394 (429)
T 4e77_A 315 LTEISQVGVYETLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGV 394 (429)
T ss_dssp HHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTE
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCe
Confidence 999887889999999999999999999888888888999999999998643110 11233455788999999999
Q ss_pred eeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777 439 LVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL 477 (477)
Q Consensus 439 ~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l 477 (477)
++.+++ ...+| +++.+|++|+++++++|+++++++
T Consensus 395 ~v~~~~--~~~~~--~~~~~t~e~i~~~l~~l~~~l~~~ 429 (429)
T 4e77_A 395 YLAPSA--FEAGF--MSLAHSNEDIQKTVNAARRCFAKL 429 (429)
T ss_dssp ECCSST--TSCEE--CCTTCCHHHHHHHHHHHHHHHTTC
T ss_pred EEeecC--CCCEE--EeccCCHHHHHHHHHHHHHHHHhC
Confidence 999875 23344 579999999999999999998764
No 19
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=100.00 E-value=9.7e-60 Score=482.52 Aligned_cols=394 Identities=28% Similarity=0.442 Sum_probs=316.7
Q ss_pred ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccc-ccCChHHHHHHHHHHhhCCCC
Q 011777 76 YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT-IYLHHAIADFAEALASKMPGN 154 (477)
Q Consensus 76 ~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~-~~~~~~~~~l~~~La~~~~~~ 154 (477)
...|+++++|+|+|+||.||++||||.+++++++|||+||+|++|+.+++++..+... .+.++...+++++|+++++.+
T Consensus 9 ~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~ 88 (430)
T 3i4j_A 9 SKPYPVAVRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGSQFSSDVLEEYAGRLARFVGLP 88 (430)
T ss_dssp SSCCCEEEEEEBTEEEETTSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTTCEEHHHHHHHHHHHHHTTCT
T ss_pred CCCCceEEeeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCC
Confidence 4568999999999999999999999999999999999999999999999988655443 567788999999999999887
Q ss_pred CCEEEEeCChHHHHHHHHHHHHhc------cCCceEEEEccCccCCcccccccccCCCCCCCCCC--C--CeeeecCCCC
Q 011777 155 LKVVYFVNSGTEANELAMLMARLS------TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQ--G--EIHHVVNPDP 224 (477)
Q Consensus 155 ~~~v~~~~sGseA~~~Al~~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~ 224 (477)
.++|+|+|||+||++.|+++++.+ ++++.||+++++|||++..++..++...++....+ . ++..++.++.
T Consensus 89 ~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (430)
T 3i4j_A 89 TFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDP 168 (430)
T ss_dssp TCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCT
T ss_pred CCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcc
Confidence 889999999999999999999877 78899999999999999988887765443322211 2 5555555554
Q ss_pred cCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCC-CCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCC
Q 011777 225 YHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQG-VGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSH 303 (477)
Q Consensus 225 ~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~-~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~ 303 (477)
+++ ....+++|+++++..+++++++|++||++| ++|.+++++++|++|+++|++||++||+||||+|||++| .
T Consensus 169 ~~~-----~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g-~ 242 (430)
T 3i4j_A 169 ARN-----GAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCG-S 242 (430)
T ss_dssp TSC-----HHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS-S
T ss_pred cch-----hhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc-c
Confidence 432 334467888888743336789999999999 999999999999999999999999999999999999999 6
Q ss_pred Ccccccc-CCCcceeeecccccCc-cceEEEEeCHHHHHhhccc----ccccCCCCcHHHHHHHHHHHHhhchhhHHHHH
Q 011777 304 YWGFETQ-GVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQK----IQFNTFGGNPVCSAGGLAVLRVIDKERRQAHC 377 (477)
Q Consensus 304 ~~~~~~~-gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~~----~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~ 377 (477)
+++++++ ++.||++||||++++| +|+|++++++++++.+... .+.+||++|+++++|++++|+.++++++.+++
T Consensus 243 ~~~~~~~~~~~~di~t~sK~l~~G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~ 322 (430)
T 3i4j_A 243 PLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAA 322 (430)
T ss_dssp SSGGGGTTTCCCSEEEECGGGTTTSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred hhhhhhhcCCCCcEEEEcccccCCccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHHHHH
Confidence 8888998 9999999999999999 9999999999999988753 57789999999999999999998888899999
Q ss_pred HHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCcc--HHHHHHHHHHHHHcCceeecc-----CCCCCEE
Q 011777 378 ADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPA--KAETAVLFEKLRELGVLVGKG-----GLHGNVF 450 (477)
Q Consensus 378 ~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~--~~~~~~~~~~l~~~Gv~v~~~-----~~~~~~i 450 (477)
++++++++++|+++..+++.+..+++.|+|+++++.+ ...+.+. .....++.+.|+++||++.++ +..++++
T Consensus 323 ~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~i 401 (430)
T 3i4j_A 323 KERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLGD-LATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHL 401 (430)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEC-------------CHHHHHHHHHHTTEECC-----------CEE
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEecc-ccccCCCccHHHHHHHHHHHHhCCCEEEecccccCCCCCCEE
Confidence 9999999999999988888888999999999999862 2111111 112467889999999999987 2236899
Q ss_pred EEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 451 RIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 451 Ri~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
||+|++.+|++++++++++|++++++
T Consensus 402 Ri~~~~~~t~e~i~~~l~~l~~~l~~ 427 (430)
T 3i4j_A 402 LLGPPLSITAAEVDGLLALLAGALED 427 (430)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999865
No 20
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=100.00 E-value=2.3e-59 Score=480.14 Aligned_cols=391 Identities=26% Similarity=0.465 Sum_probs=318.4
Q ss_pred CCHHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccc
Q 011777 55 PSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTI 134 (477)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~ 134 (477)
+++++++++..+++... +.+.|+++++|+|+|+||.||++||||.+|++++++||+||+|++|+.+++++..+....
T Consensus 27 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~d~~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~~~~~ 103 (433)
T 1z7d_A 27 KTPEDYINNELKYGAHN---YDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRA 103 (433)
T ss_dssp CCHHHHHHHHHHHBCCC---CCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTT
T ss_pred ccHHHHHHHHHHhcccc---cCCCCceEEeeecCEEEECCCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCCccCC
Confidence 46788998888887543 224588999999999999999999999999999999999999999999999886554444
Q ss_pred cCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc--------cCCceEEEEccCccCCcccccccccCCC
Q 011777 135 YLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS--------TGNLGMIALRNAYHGGSSGTIGLTALNT 206 (477)
Q Consensus 135 ~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~--------~~~~~ii~~~~~yhG~~~~~~~~~~~~~ 206 (477)
+.++...+++++|+++++ .++|+|++||+||++.|+++++.+ +++++||+++++|||++..++..++...
T Consensus 104 ~~~~~~~~l~~~la~~~g--~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~ 181 (433)
T 1z7d_A 104 FFSVPLGICERYLTNLLG--YDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKK 181 (433)
T ss_dssp SEEHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC----------------
T ss_pred cCCHHHHHHHHHHHhhcC--CCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCcc
Confidence 667788999999999984 589999999999999999998853 2568999999999999888777765332
Q ss_pred CCCCCCC--CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHh
Q 011777 207 WKYPIPQ--GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKA 284 (477)
Q Consensus 207 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~ 284 (477)
++....+ .++..++. + | +++|+++++ .+++++|++||+++++|.++++++++++|+++|++|
T Consensus 182 ~~~~~~p~~~~v~~~~~--------~-d----~~~le~~l~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~ 245 (433)
T 1z7d_A 182 CTSNFGPFAPQFSKVPY--------D-D----LEALEEELK---DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKY 245 (433)
T ss_dssp ----------CEEEECT--------T-C----HHHHHHHHT---STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT
T ss_pred ccccCCCCCCCeEEeCC--------C-C----HHHHHHHhC---CCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHc
Confidence 2221111 23333322 1 1 588888885 257899999999999998899999999999999999
Q ss_pred CcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHH
Q 011777 285 GGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLA 363 (477)
Q Consensus 285 gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a 363 (477)
|++||+||+|+||||+| .+++++.+++.||++||||++++| +|+|++++++++++.+....+.+||++||++++++.+
T Consensus 246 g~llI~DEv~~g~g~~g-~~~~~~~~~~~~di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a 324 (433)
T 1z7d_A 246 NVLFVADEVQTGLGRTG-KLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVE 324 (433)
T ss_dssp TCEEEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHH
T ss_pred CCEEEEecCccCCCcCC-cchhhHhcCCCCCEEEECccccCCCCCeEEEEECHHHHhhhccccccccCCCCHHHHHHHHH
Confidence 99999999999999999 678888899999999999999999 9999999999999888776788999999999999999
Q ss_pred HHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeecc
Q 011777 364 VLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKG 443 (477)
Q Consensus 364 ~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~ 443 (477)
+|+.++++++.+++++++++++++|+++...++.+..+++.|+|+++++..+. ....++.+.|+++||++.++
T Consensus 325 al~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~g~~~~i~~~~~~-------~~~~~~~~~l~~~Gv~v~~~ 397 (433)
T 1z7d_A 325 ALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNEL-------VNVLDICLKLKENGLITRDV 397 (433)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTT-------CCHHHHHHHHHHTTEECCEE
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeeeeEEEEEEccCh-------hHHHHHHHHHHHCCeEEecC
Confidence 99998878899999999999999999886667777788999999999885321 01457888999999999986
Q ss_pred CCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 444 GLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 444 ~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
+ ++++||+|++.+|++||++++++|++++++
T Consensus 398 ~--~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 428 (433)
T 1z7d_A 398 H--DKTIRLTPPLCITKEQLDECTEIIVKTVKF 428 (433)
T ss_dssp T--TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred C--CCEEEEECCcCCCHHHHHHHHHHHHHHHHH
Confidence 4 689999999999999999999999998764
No 21
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=100.00 E-value=1.8e-59 Score=480.14 Aligned_cols=410 Identities=23% Similarity=0.312 Sum_probs=339.6
Q ss_pred CCCCHHHHHHHHhhhcCCCccc---c----ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHH
Q 011777 53 TGPSADQVFQKRKQFLGPSIFH---Y----YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQS 125 (477)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~---~----~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l 125 (477)
..|++.+++++.+++++.+... . ...|+++++|+|+|+||.||++||||.+|++++++||+||+|++|+.+++
T Consensus 2 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~ 81 (427)
T 3fq8_A 2 KTIKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAM 81 (427)
T ss_dssp CCHHHHHHHHHHTTTSGGGSSSGGGGCTTTTSCCCCEEEEEBTEEEETTSCEEEESSGGGTTCTTCBTCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhhcCCCcccccccccccCCCCceEEEeeeCEEEECCCCEEEECCCchhhhccCCCCHHHHHHHHHHH
Confidence 4567899999999998754321 1 25689999999999999999999999999999999999999999999999
Q ss_pred hhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCC
Q 011777 126 KLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALN 205 (477)
Q Consensus 126 ~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~ 205 (477)
+++.+. .+.++...+|+++|++.++ +.++|+|+|||+||++.|+++++.++++++||+++++|||++..++..++..
T Consensus 82 ~~~~~~--~~~~~~~~~la~~l~~~~~-~~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~ 158 (427)
T 3fq8_A 82 EKGTSF--GAPCALENVLAEMVNDAVP-SIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSG 158 (427)
T ss_dssp TTCSCC--SSCCHHHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTH
T ss_pred HhCCCc--CCCCHHHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCc
Confidence 876542 2477889999999999997 5789999999999999999999998999999999999999998887776543
Q ss_pred CCCCCCCC-CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHh
Q 011777 206 TWKYPIPQ-GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKA 284 (477)
Q Consensus 206 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~ 284 (477)
......+. .++......+....++++ +++|+++++.. ++++++|++||+++++|.+.++++|+++|+++|++|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~~le~~l~~~-~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~ 232 (427)
T 3fq8_A 159 VATLGLPSSPGVPKKTTANTLTTPYND-----LEAVKALFAEN-PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEH 232 (427)
T ss_dssp HHHHTCCSCSSSCHHHHTTEEEEETTC-----HHHHHHHHHHS-TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHT
T ss_pred ccccCCCCCCCCCCcccCceeecCCCC-----HHHHHHHHHhC-CCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHc
Confidence 22111111 122110001111122222 58888888742 357999999999999999999999999999999999
Q ss_pred CcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhccc---ccccCCCCcHHHHHHH
Q 011777 285 GGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK---IQFNTFGGNPVCSAGG 361 (477)
Q Consensus 285 gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~---~~~~t~~~~~~~~aaa 361 (477)
|++||+||+|+|| |+| ..+..+.+++.||++||||++++|+|+|++++++++++.+... .+.+||++|+++++++
T Consensus 233 ~~~li~DEv~~g~-~~g-~~~~~~~~~~~~di~t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~ 310 (427)
T 3fq8_A 233 DALLVFDEVITGF-RIA-YGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAG 310 (427)
T ss_dssp TCEEEEECTTTBT-TTB-TTHHHHHTTCCCSEEEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHH
T ss_pred CCEEEEecccccc-ccC-cchhhHhcCCCCChhhhhhhhhCCcceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHH
Confidence 9999999999999 888 6777888999999999999999999999999999999988652 4778999999999999
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCC-----CCccHHHHHHHHHHHHHc
Q 011777 362 LAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKE-----KTPAKAETAVLFEKLREL 436 (477)
Q Consensus 362 ~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~-----~~~~~~~~~~~~~~l~~~ 436 (477)
.++|+.++++++.+++++++++++++|+++..+++....+++.|+++++++...... ..++......+.+.|+++
T Consensus 311 ~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 390 (427)
T 3fq8_A 311 IKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQ 390 (427)
T ss_dssp HHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHC
Confidence 999999888889999999999999999998888887778899999999998543211 223444567889999999
Q ss_pred CceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777 437 GVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL 477 (477)
Q Consensus 437 Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l 477 (477)
||++.+++. . |+++++.+|++|+++++++|+++++++
T Consensus 391 Gi~v~~~~~--~--r~~~~~~~t~e~i~~~l~~l~~~l~~~ 427 (427)
T 3fq8_A 391 GIYLAPSQF--E--AGFTSLAHTEEDIDATLAAARTVMSAL 427 (427)
T ss_dssp TEECCSSTT--S--CEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CcEEecCCC--C--CEEeeCcCCHHHHHHHHHHHHHHHHhC
Confidence 999998652 2 677799999999999999999998764
No 22
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=100.00 E-value=3e-59 Score=479.93 Aligned_cols=394 Identities=26% Similarity=0.454 Sum_probs=331.3
Q ss_pred CCCCCHHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccc
Q 011777 52 YTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA 131 (477)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~ 131 (477)
++++++++++++..+++... +.+.|+++++|+|+|+||.||++||||.+|++++++||+||+|++|+.+++++..+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~G~~~~d~~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~~ 111 (439)
T 2oat_A 35 QGPPTSDDIFEREYKYGAHN---YHPLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLT 111 (439)
T ss_dssp -CCCCHHHHHHHHHHHBCCC---CCCCSCEEEEEEBTEEEETTCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSCC
T ss_pred CCCCCHHHHHHHHHHhcccc---cCCCCeeEEeeecCEEEECCCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCcc
Confidence 44667889999888887654 224689999999999999999999999999999999999999999999999886554
Q ss_pred ccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc--------cCCceEEEEccCccCCccccccccc
Q 011777 132 TTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS--------TGNLGMIALRNAYHGGSSGTIGLTA 203 (477)
Q Consensus 132 ~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~--------~~~~~ii~~~~~yhG~~~~~~~~~~ 203 (477)
...+.++...+++++|+++++ .++|+|++||+||++.|+++++.+ +++++||+++++|||.+..++..++
T Consensus 112 ~~~~~~~~~~~l~~~la~~~g--~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g 189 (439)
T 2oat_A 112 SRAFYNNVLGEYEEYITKLFN--YHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSST 189 (439)
T ss_dssp CTTSEESSHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCC
T ss_pred cCccCCHHHHHHHHHHHHhcC--CCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCC
Confidence 444566788999999999884 589999999999999999998753 2558999999999999887777655
Q ss_pred CCCCCCCCCC--CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHH
Q 011777 204 LNTWKYPIPQ--GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIV 281 (477)
Q Consensus 204 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~ 281 (477)
.+.++....+ .++..++.+ | +++|+++++ .+++++|++||+++++|.++++++++++|+++|
T Consensus 190 ~~~~~~~~~p~~~~v~~~~~~---------d----~~~le~~l~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~ 253 (439)
T 2oat_A 190 DPTSYDGFGPFMPGFDIIPYN---------D----LPALERALQ---DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELC 253 (439)
T ss_dssp CHHHHTTSCSCCTTEEEECSS---------C----HHHHHHHTT---STTEEEEEECSSBTTTTSBCCCTTHHHHHHHHH
T ss_pred ChhcccCCCCCCCCeEEeCCC---------C----HHHHHHHhC---CCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHH
Confidence 3222211111 244444321 1 588888885 257899999999999998899999999999999
Q ss_pred HHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhcccccccCCCCcHHHHHH
Q 011777 282 RKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAG 360 (477)
Q Consensus 282 ~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aa 360 (477)
++||++||+||+|+||||+| .+++++++++.||++||||++++| +|+|++++++++++.+....+.+||++||+++++
T Consensus 254 ~~~gillI~DEv~~g~g~~g-~~~~~~~~~~~~Di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aa 332 (439)
T 2oat_A 254 TRHQVLFIADEIQTGLARTG-RWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRV 332 (439)
T ss_dssp HHTTCEEEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHH
T ss_pred HHcCCEEEEeccccCCccCC-cchhHHHhCCCCcEEEecccccCCCCCeEEEEECHHHHhccCCCCcccCCCcCHHHHHH
Confidence 99999999999999999999 778889999999999999999999 9999999999999888776788999999999999
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCcee
Q 011777 361 GLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLV 440 (477)
Q Consensus 361 a~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v 440 (477)
+.++|+.++++++.+++++++++++++|+++ .++.+..+++.|+|+++++..+.. ....++.+.|+++||++
T Consensus 333 a~aal~~~~~~~~~~~~~~~~~~l~~~L~~l--~~~~~~~~~~~g~~~~v~l~~~~~------~~~~~l~~~l~~~Gv~v 404 (439)
T 2oat_A 333 AIAALEVLEEENLAENADKLGIILRNELMKL--PSDVVTAVRGKGLLNAIVIKETKD------WDAWKVCLRLRDNGLLA 404 (439)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHTTS--CTTTEEEEEEETTEEEEEECCCSS------CCHHHHHHHHHHTTEEC
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh--cCCCcEEEEeeeeEEEEEEecCcc------HHHHHHHHHHHHCCeEE
Confidence 9999999887889999999999999999876 456666788999999998853210 11457888999999999
Q ss_pred eccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777 441 GKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL 477 (477)
Q Consensus 441 ~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l 477 (477)
.+.+ ++++||+||+.+|++|+++++++|+++++++
T Consensus 405 ~~~~--~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 439 (439)
T 2oat_A 405 KPTH--GDIIRFAPPLVIKEDELRESIEIINKTILSF 439 (439)
T ss_dssp CBSS--SSEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred ecCC--CCEEEEECccCCCHHHHHHHHHHHHHHHHhC
Confidence 9854 6899999999999999999999999998764
No 23
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=100.00 E-value=1.1e-59 Score=487.29 Aligned_cols=415 Identities=25% Similarity=0.376 Sum_probs=327.1
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHH
Q 011777 39 PPQLPPFDHDPKPYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVL 118 (477)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~ 118 (477)
+|+.|.+.. +.++|++++++++..+++.... ...|+.+++|+|+||||.|||+||||++|+++++|||+||+|+
T Consensus 12 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~ 85 (472)
T 1ohv_A 12 DYDGPLMKT---EVPGPRSRELMKQLNIIQNAEA---VHFFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALV 85 (472)
T ss_dssp CCSSCBCCS---CSSCHHHHHHHHHHHHHSCCTT---CCCCBCGGGCBBTEEEBTTSCEEEESSHHHHTCSSCBTCHHHH
T ss_pred Ccccccccc---cCCCccHHHHHHHHHhhhcccc---ccCCceEEEEEcCEEEeCCCCEEEECCCCHhhcccCCCCHHHH
Confidence 556655543 3567788999999988875431 2345778999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc--ccccccc---CChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc-----------c---
Q 011777 119 NAIFEQSKLL--QHATTIY---LHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS-----------T--- 179 (477)
Q Consensus 119 ~Av~~~l~~~--~~~~~~~---~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~-----------~--- 179 (477)
+|+.+|+... .+....+ ..+...+++++|+++++.+.++|+|+|||+|||+.|+|+++.+ |
T Consensus 86 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~ 165 (472)
T 1ohv_A 86 KLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEE 165 (472)
T ss_dssp HHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHhhcccccccccccccHHHHHHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccc
Confidence 9999987543 2221111 2455667777777777767889999999999999999999744 1
Q ss_pred ----------C--CceEEEEccCccCCcccccccccCCCC-CCCCCCCCeeeecCCCCcCCCCCCCH-------HHHHHH
Q 011777 180 ----------G--NLGMIALRNAYHGGSSGTIGLTALNTW-KYPIPQGEIHHVVNPDPYHGSFGSDA-------ARYAQD 239 (477)
Q Consensus 180 ----------~--~~~ii~~~~~yhG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 239 (477)
| +++||+++++|||++.+++++++...+ ....+..++.++++|. ++.++..+. ...+++
T Consensus 166 ~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~d~~~ 244 (472)
T 1ohv_A 166 LETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPR-LKYPLEEFVKENQQEEARCLEE 244 (472)
T ss_dssp HHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCC-CCSSGGGCHHHHHHHHHHHHHH
T ss_pred cccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCcccCCCc-ccCccccccccchhHHHHHHHH
Confidence 4 589999999999999999888765422 1122223444444442 333321110 124678
Q ss_pred HHHHHhccC--CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCC--cc
Q 011777 240 LQDHIDFGT--SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVI--PD 315 (477)
Q Consensus 240 le~~i~~~~--~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~--pD 315 (477)
|+++|+... ..++++|++||+++++|.++++++||++|+++|++||++||+||||+|||++| .+|+++++++. ||
T Consensus 245 l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g-~~~~~~~~gv~~~~D 323 (472)
T 1ohv_A 245 VEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTG-KFWAHEHWGLDDPAD 323 (472)
T ss_dssp HHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTS-SSSGGGGGCCSSCCS
T ss_pred HHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCC-CchhccccCCCCCCC
Confidence 888886321 12799999999999999999999999999999999999999999999999999 67888888987 99
Q ss_pred eeeeccc-ccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHh
Q 011777 316 IVTMAKG-IGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQER 394 (477)
Q Consensus 316 ivt~sK~-lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~ 394 (477)
++||||+ ++|| +++ ++++. .+....+++||++|++++++++++|+.+.++++.+++++++++++++|+++..+
T Consensus 324 i~t~sK~~l~GG----~~~-~~~~~-~~~~~~~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~ 397 (472)
T 1ohv_A 324 VMTFSKKMMTGG----FFH-KEEFR-PNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQAR 397 (472)
T ss_dssp EEEECGGGSSEE----EEE-CGGGS-CSSSSSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEccccccCC----ccC-chhhc-ccccccccCccCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999 6764 444 66652 234456789999999999999999999887889999999999999999998767
Q ss_pred CC-CceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777 395 HD-IIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYS 473 (477)
Q Consensus 395 ~~-~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~ 473 (477)
++ .+..+++.|+|+++++.. ......+.+.|+++||++.+++ .++|||+|++.+|++||++++++|+++
T Consensus 398 ~~~~v~~~~~~g~~~~~~~~~--------~~~~~~~~~~l~~~Gv~~~~~g--~~~iRi~~~~~~t~e~i~~~~~~l~~~ 467 (472)
T 1ohv_A 398 YPQFISRVRGRGTFCSFDTPD--------ESIRNKLISIARNKGVMLGGCG--DKSIRFRPTLVFRDHHAHLFLNIFSDI 467 (472)
T ss_dssp CTTTCEEEEEETTEEEEECSS--------HHHHHHHHHHHHHTTEECEEET--TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred CCCcEEeecCCceEEEEEeCC--------hhHHHHHHHHHHHCCeEEecCC--CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 77 477889999999987631 2245678899999999999864 579999999999999999999999999
Q ss_pred HhhC
Q 011777 474 MSKL 477 (477)
Q Consensus 474 l~~l 477 (477)
++++
T Consensus 468 l~~~ 471 (472)
T 1ohv_A 468 LADF 471 (472)
T ss_dssp HHTC
T ss_pred HHhc
Confidence 8764
No 24
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=100.00 E-value=3.2e-64 Score=515.87 Aligned_cols=392 Identities=21% Similarity=0.282 Sum_probs=330.0
Q ss_pred CCCHHHHHHHHhhhcCCCccc----cccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc
Q 011777 54 GPSADQVFQKRKQFLGPSIFH----YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ 129 (477)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~----~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~ 129 (477)
.|++++++++++++++.++.. +...|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|++++.
T Consensus 54 ~~~s~~l~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~G~~l~D~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~ 133 (465)
T 2yky_A 54 NPVSAGHHERARRSMPGGNTRSILFHRPFPLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGL 133 (465)
Confidence 667899999999998754322 3346999999999999999999999999999999999999999999999998842
Q ss_pred ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777 130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY 209 (477)
Q Consensus 130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~ 209 (477)
...|+++...+|+++|++++| +.++++|+|||+|||+.|++++|.++++++||+++++|||++.+++ ++ + ..
T Consensus 134 --~~~~~~~~~~~Lae~L~~~~p-~~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~--sg-~-~~- 205 (465)
T 2yky_A 134 --NLSTQTENEALFAEAVCDRFP-SIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFA--SG-H-AP- 205 (465)
Confidence 234678889999999999997 5789999999999999999999999999999999999999999877 22 0 00
Q ss_pred CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777 210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI 289 (477)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI 289 (477)
.++.. .....++++ +++|+++++.. ++++++|++||+++++|.++++++|+++|+++|++||++||
T Consensus 206 ----~g~~~----~~~~~~~~d-----~~~l~~~l~~~-~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI 271 (465)
T 2yky_A 206 ----TNAPY----HVVLGVYND-----VEGTADLLKRH-GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLI 271 (465)
Confidence 12211 111122322 47788877632 35799999999999999999999999999999999999999
Q ss_pred EcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcc-----cccccCCCCcHHHHHHHHHH
Q 011777 290 ADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQ-----KIQFNTFGGNPVCSAGGLAV 364 (477)
Q Consensus 290 ~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~-----~~~~~t~~~~~~~~aaa~a~ 364 (477)
+||||+ | |+| .+++++++++.||++||||++++|+|+||+++++++++.+.. ..+.+||++||++|+|++++
T Consensus 272 ~DEv~~-~-r~g-~~~a~~~~gv~pDi~t~sK~lg~G~piG~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aa 348 (465)
T 2yky_A 272 FDEVMT-S-RLS-GGGAQEMLGISADLTTLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAA 348 (465)
Confidence 999999 6 888 678889999999999999999999999999999999998876 24779999999999999999
Q ss_pred HHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCC-----CCCCccHHHHHHHHHHHHHcCce
Q 011777 365 LRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDR-----KEKTPAKAETAVLFEKLRELGVL 439 (477)
Q Consensus 365 l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~-----~~~~~~~~~~~~~~~~l~~~Gv~ 439 (477)
|+.++++++.+++++++++++++|+++..+++.+.++++.|+|+++++..+. ..+.++......+.+.|+++||+
T Consensus 349 L~~l~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~ 428 (465)
T 2yky_A 349 LTQIYTRQAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIY 428 (465)
Confidence 9999888899999999999999999998888878889999999999986411 11112233456788999999999
Q ss_pred eeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 440 VGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 440 v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
+.|++ ++. ||+.+|++||++++++|++++++
T Consensus 429 v~p~~-~~~-----~s~~~t~edid~~l~~l~~~l~~ 459 (465)
T 2yky_A 429 LAPRG-MYA-----LSLEIADAGRDAFAEALADFIGE 459 (465)
Confidence 99875 222 78999999999999999998865
No 25
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=100.00 E-value=4e-58 Score=465.18 Aligned_cols=372 Identities=29% Similarity=0.468 Sum_probs=326.5
Q ss_pred ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCC
Q 011777 76 YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNL 155 (477)
Q Consensus 76 ~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~ 155 (477)
...|+++++|+|+++||.||++||||.++++++++||+||+|++|+.+++++..+....+.++...+++++|+++++ .
T Consensus 16 ~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~--~ 93 (395)
T 3nx3_A 16 KRFDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASA--L 93 (395)
T ss_dssp GSCSCBEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCCTTSBCHHHHHHHHHHHHHHT--C
T ss_pred CCCCceEEeeeeeEEEECCCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhcC--C
Confidence 45689999999999999999999999999999999999999999999999887766556778899999999999985 5
Q ss_pred CEEEEeCChHHHHHHHHHHHHhc-----cCCceEEEEccCccCCcccccccccCCCCCCCCCC--CCeeeecCCCCcCCC
Q 011777 156 KVVYFVNSGTEANELAMLMARLS-----TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQ--GEIHHVVNPDPYHGS 228 (477)
Q Consensus 156 ~~v~~~~sGseA~~~Al~~ar~~-----~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 228 (477)
++++|++||+||++.|+++++.+ +++++||+++++|||.+..++..++.+.++....+ .++..++.++
T Consensus 94 ~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----- 168 (395)
T 3nx3_A 94 ERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYND----- 168 (395)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTTC-----
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCCC-----
Confidence 79999999999999999999877 67899999999999999988888764433222211 2333333211
Q ss_pred CCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccc
Q 011777 229 FGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFE 308 (477)
Q Consensus 229 ~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~ 308 (477)
+++|+++++ +++++|++||+++++|.++++++++++|.++|++||++||+||+|+|||++| .+++++
T Consensus 169 --------~~~l~~~l~----~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g-~~~~~~ 235 (395)
T 3nx3_A 169 --------ISSVEKLVN----EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSG-KFFAYE 235 (395)
T ss_dssp --------HHHHHTTCC----TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS-SSSGGG
T ss_pred --------HHHHHHhcc----CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCC-cchhHH
Confidence 577887775 5789999999999999999999999999999999999999999999999999 678888
Q ss_pred ccCCCcceeeecccccCccceEEEEeCHHH-HHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Q 011777 309 TQGVIPDIVTMAKGIGNGLPLGAVVTTPEI-ANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGR 387 (477)
Q Consensus 309 ~~gv~pDivt~sK~lg~G~pig~v~~~~~~-~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~ 387 (477)
.+++.||++||||++++|+|+|++++++++ ++.+....+++||++|+++++++.++|+.++++++.++++++++++++.
T Consensus 236 ~~~~~~d~~t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~ 315 (395)
T 3nx3_A 236 HAQILPDIMTSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQS 315 (395)
T ss_dssp GGTCCCSEEEECGGGTTTSCCEEEEECHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred hcCCCCCEEEecccccCCCceEEEEEchhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 8888877788999999999999999999887788999999999999999
Q ss_pred HHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHH
Q 011777 388 LRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLV 467 (477)
Q Consensus 388 L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l 467 (477)
|.++..+++.+..+++.|+++++++.... ....+.+.|+++||++.+++ .+++||+|++.+|++|+++++
T Consensus 316 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~l~~~Gi~v~~~~--~~~iRi~~~~~~t~e~i~~~l 385 (395)
T 3nx3_A 316 LDELINEFDFCKKRKGLGFMQGLSLDKSV--------KVAKVIQKCQENALLLISCG--ENDLRFLPPLILQKEHIDEMS 385 (395)
T ss_dssp HHHHHHHCTTEEEEEEETTEEEEEECTTS--------CHHHHHHHHHHTTEECEEET--TTEEEECCCTTCCHHHHHHHH
T ss_pred HHHHHHhCCCeEEEEeEEEEEEEEeCCcc--------hHHHHHHHHHHCCCEEecCC--CCEEEEECCCCCCHHHHHHHH
Confidence 99988888888889999999999985321 24578889999999999875 689999999999999999999
Q ss_pred HHHHHHHhhC
Q 011777 468 DALDYSMSKL 477 (477)
Q Consensus 468 ~~l~~~l~~l 477 (477)
++|+++++++
T Consensus 386 ~~l~~~l~~~ 395 (395)
T 3nx3_A 386 EKLRKALKSF 395 (395)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhC
Confidence 9999998753
No 26
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=100.00 E-value=5.3e-58 Score=472.15 Aligned_cols=400 Identities=26% Similarity=0.361 Sum_probs=325.1
Q ss_pred HHHHHHHhhhcCCCccccccCceeEEeeeccEEEe-CCCCEEEeecCCcccccCCCCCHHHH-H-HHHH---HHhhcccc
Q 011777 58 DQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFD-ENGRRYLDAFAGIVTVSCGHCHPDVL-N-AIFE---QSKLLQHA 131 (477)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d-~dG~~ylD~~~g~~~~~lGh~~p~v~-~-Av~~---~l~~~~~~ 131 (477)
+++.++..+++... .++.++.+++|+|+|+|| .||++||||.++++++++||+||+|+ + |+.+ +++++.+.
T Consensus 18 ~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~d~~~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~~~ 94 (449)
T 2cjg_A 18 DRVHEVLGRSMLVD---GLDIVLDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPS 94 (449)
T ss_dssp GGHHHHHHTTSCCC---SCSSCBCTTTCBBTEEEBTTTCCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHhhccc---CCCeeEEEeeeeeCEEEECCCCcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 46777777765321 233334456999999999 99999999999999999999999999 9 9999 88876554
Q ss_pred ccccCChHHHHHHHHHHhhCC-CCCCEEEEeCChHHHHHHHHHHHHhccC------------CceEEEEccCccCCcccc
Q 011777 132 TTIYLHHAIADFAEALASKMP-GNLKVVYFVNSGTEANELAMLMARLSTG------------NLGMIALRNAYHGGSSGT 198 (477)
Q Consensus 132 ~~~~~~~~~~~l~~~La~~~~-~~~~~v~~~~sGseA~~~Al~~ar~~~~------------~~~ii~~~~~yhG~~~~~ 198 (477)
...|.++...+++++|+++++ .+.++|+|++||+|||+.|+++++.+++ +++||+++++|||++..+
T Consensus 95 ~~~~~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~ 174 (449)
T 2cjg_A 95 NSDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYT 174 (449)
T ss_dssp TTTCCCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTG
T ss_pred CcccCCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccch
Confidence 445778889999999999986 4578999999999999999999987654 789999999999999998
Q ss_pred cccccC-CCCCCCCCC--CCeeeecCCC--CcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchh
Q 011777 199 IGLTAL-NTWKYPIPQ--GEIHHVVNPD--PYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGY 273 (477)
Q Consensus 199 ~~~~~~-~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~ 273 (477)
++.++. +.++..+.+ .++..++.++ ..++.+..+....+++|+++++.. .+++++|++||++|++|.++++++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~-~~~~~~vi~ep~~~~~G~~~~~~~~ 253 (449)
T 2cjg_A 175 LSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETR-PHDIACFVAEPIQGEGGDRHFRPEF 253 (449)
T ss_dssp GGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHS-TTTEEEEEECSEETTTTCEECCHHH
T ss_pred hhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhc-CCceEEEEEeCcCCCCCCccCCHHH
Confidence 888764 222222211 2344443332 111000001123456788888632 3578999999999999989999999
Q ss_pred HHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhh-----cccccc
Q 011777 274 LKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVM-----AQKIQF 348 (477)
Q Consensus 274 l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~-----~~~~~~ 348 (477)
|++|+++|++||++||+||||+||||+| .+|+++++++.||++||||++ |+|++++++++++.+ ....++
T Consensus 254 l~~l~~l~~~~g~lli~DEv~~g~g~~g-~~~~~~~~~~~~di~t~sK~l----~iG~~~~~~~~~~~l~~~~~~~~~~~ 328 (449)
T 2cjg_A 254 FAAMRELCDEFDALLIFDEVQTGCGLTG-TAWAYQQLDVAPDIVAFGKKT----QVCGVMAGRRVDEVADNVFAVPSRLN 328 (449)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTTTTTTS-SSSTHHHHTCCCSEEEECGGG----SSEEEEECGGGGGSTTCTTTSTTSSC
T ss_pred HHHHHHHHHHCCcEEEEeccccCCCccC-cceeecccCCCceEEEecCcc----cEEEEEECHHHhhhhhhcccCCcccc
Confidence 9999999999999999999999999999 677788889999999999999 899999999998862 334567
Q ss_pred cCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCC-ceeeeccceeEEEEEeeCCCCCCccHHHHH
Q 011777 349 NTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDI-IGDVRGRGLMVGMELVTDRKEKTPAKAETA 427 (477)
Q Consensus 349 ~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~-~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~ 427 (477)
+||++|+++++|+.++|+.++++++.+++++++++++++|+++..+++. +..+++.|+|+++++.. .....
T Consensus 329 ~t~~~n~~~~~aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~~~~~~~~--------~~~~~ 400 (449)
T 2cjg_A 329 STWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSLPT--------TADRD 400 (449)
T ss_dssp CSSSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTEEEEECSS--------HHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEEEEEEECC--------hHHHH
Confidence 8999999999999999998877889999999999999999998777776 77889999999987731 22356
Q ss_pred HHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 428 VLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 428 ~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
++.+.|+++||++.+++ .+++||+|++.+|+++|++++++|++++++
T Consensus 401 ~~~~~l~~~Gv~v~~~g--~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 447 (449)
T 2cjg_A 401 ELIRQLWQRAVIVLPAG--ADTVRFRPPLTVSTAEIDAAIAAVRSALPV 447 (449)
T ss_dssp HHHHHHHHTTEECEEET--TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCeEEecCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 78889999999999875 589999999999999999999999999865
No 27
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=100.00 E-value=2.1e-57 Score=465.75 Aligned_cols=409 Identities=22% Similarity=0.321 Sum_probs=327.6
Q ss_pred CCCCHHHHHHHHhhhcCCCcc---c-c-ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhh
Q 011777 53 TGPSADQVFQKRKQFLGPSIF---H-Y-YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKL 127 (477)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~---~-~-~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~ 127 (477)
++|++++++++.+++++.+.. . + .+.|+.+++|+|+|+||.||++||||.++++++++||+||+|++|+.+++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~ 87 (434)
T 2epj_A 8 SGEKSRMLFERTKELFPGGVNSPVRAAVKPYPFYVKRGEGAYLYTVDGARIVDLVLAYGPLILGHKHPRVLEAVEEALAR 87 (434)
T ss_dssp -CHHHHHHHHHHTTTSGGGSSSGGGGGCSSSCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHT
T ss_pred CCcchHHHHHHHHhhcCCCcCcccccccCCCCeeEEeeecCEEEECCCCEEEEcccchhcccCCCCCHHHHHHHHHHHHh
Confidence 567889999999999865431 1 2 3458999999999999999999999999999999999999999999999987
Q ss_pred ccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCC
Q 011777 128 LQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTW 207 (477)
Q Consensus 128 ~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~ 207 (477)
..+ ..+.++...+++++|+++++ +.++|+|++||+||+++|+++||.++++++||+++++|||++..++..++....
T Consensus 88 ~~~--~~~~~~~~~~l~~~la~~~~-~~~~v~~~~sgseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 164 (434)
T 2epj_A 88 GWL--YGAPGEAEVLLAEKILGYVK-RGGMIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAA 164 (434)
T ss_dssp CSC--CSSCCHHHHHHHHHHHHHHC-TTCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC----
T ss_pred CCC--CCCCCHHHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCcc
Confidence 432 24677888999999999986 578999999999999999999988889999999999999999887766543211
Q ss_pred CCCCCC-CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCc
Q 011777 208 KYPIPQ-GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGG 286 (477)
Q Consensus 208 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gi 286 (477)
....+. .++.....+..+..+++ | +++|+++++.. ++++++|++||+++++|.+.++++|+++|+++|++||+
T Consensus 165 ~~~~p~~~g~~~~~~~~~~~~~~~-d----~~~le~~l~~~-~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~ 238 (434)
T 2epj_A 165 HYGVPTSAGVPEAVARLTLVTPYN-D----VEALERVFAEY-GDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGA 238 (434)
T ss_dssp --CEESSTTCCHHHHTTEEEEETT-C----HHHHHHHHHHH-GGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTC
T ss_pred ccCCCCCCCCCCcccCceEecCCC-C----HHHHHHHHHhC-CCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCC
Confidence 110000 12110000000111122 1 57888888632 24789999999999999889999999999999999999
Q ss_pred EEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhccc---ccccCCCCcHHHHHHHHH
Q 011777 287 VCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK---IQFNTFGGNPVCSAGGLA 363 (477)
Q Consensus 287 llI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~---~~~~t~~~~~~~~aaa~a 363 (477)
+||+||+|+|| ++| ..+.++++++.||++||||++++|+|+|++++++++++.+... .+++||++|+++++++.+
T Consensus 239 ~lI~DEv~~g~-~~g-~~~~~~~~~~~~di~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a 316 (434)
T 2epj_A 239 LLILDEVVTGF-RLG-LEGAQGYFNIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLA 316 (434)
T ss_dssp EEEEEETTTTT-TSS-TTHHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHH
T ss_pred EEEEEcchhce-eCC-cchhhHHhCCCCCeeeecchhcCCcceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHH
Confidence 99999999999 777 5677788899999999999999999999999999999887652 366899999999999999
Q ss_pred HHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCC-----CCCccHHHHHHHHHHHHHcCc
Q 011777 364 VLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRK-----EKTPAKAETAVLFEKLRELGV 438 (477)
Q Consensus 364 ~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~-----~~~~~~~~~~~~~~~l~~~Gv 438 (477)
+|+.++++++.+++++++++++++|+++..+++.+..+++.|+|+++++..+.. .+.++......+.+.|+++||
T Consensus 317 ~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv 396 (434)
T 2epj_A 317 TLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGV 396 (434)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTE
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCe
Confidence 999987788999999999999999999876667666788999999999853110 011223446678899999999
Q ss_pred eeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 439 LVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 439 ~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
++.+++. . |+++++.+|++|+++++++|++++++
T Consensus 397 ~v~~~~~--~--~~~~~~~~t~e~i~~~l~~l~~~l~~ 430 (434)
T 2epj_A 397 FIAPSNL--E--AVFTGLPHQGEALEIAVEGLRSSLKT 430 (434)
T ss_dssp ECCSSTT--S--CEECCTTCSHHHHHHHHHHHHHHHHH
T ss_pred EEeccCC--C--cEEEeccCCHHHHHHHHHHHHHHHHH
Confidence 9998752 3 35568999999999999999998864
No 28
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=100.00 E-value=3.5e-57 Score=462.19 Aligned_cols=389 Identities=29% Similarity=0.469 Sum_probs=313.9
Q ss_pred HHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccC
Q 011777 57 ADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYL 136 (477)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~ 136 (477)
..++.++..+++.+. +.+.|+++++|+|+|+||.||++||||.++++++++||+||+|++|+.+++++..+....|.
T Consensus 21 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~ 97 (420)
T 2pb2_A 21 TAITRATFDEVILPV---YAPADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFT 97 (420)
T ss_dssp ---------------------CCSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTTSC
T ss_pred HHHHHHHHHHhhhcc---ccCCCceEEeeecCEEEECCCCEEEEccccccccccCCCCHHHHHHHHHHHHhcccccCccC
Confidence 345666667766543 23468999999999999999999999999999999999999999999999988665444567
Q ss_pred ChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc------cCCceEEEEccCccCCcccccccccCCCCCCC
Q 011777 137 HHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS------TGNLGMIALRNAYHGGSSGTIGLTALNTWKYP 210 (477)
Q Consensus 137 ~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~ 210 (477)
.+...+++++|+++++ .++|+|++||+||++.|+++++.+ +++++||+++++|||.+...+..++...++..
T Consensus 98 ~~~~~~l~~~la~~~g--~~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~ 175 (420)
T 2pb2_A 98 NEPALRLGRKLIDATF--AERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDG 175 (420)
T ss_dssp CHHHHHHHHHHHHHSS--CSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTT
T ss_pred CHHHHHHHHHHHhhCC--CCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCcccccc
Confidence 7889999999999985 579999999999999999998865 57779999999999998877766553322111
Q ss_pred CC--CCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEE
Q 011777 211 IP--QGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVC 288 (477)
Q Consensus 211 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gill 288 (477)
+. ..++..++.+ | +++|+++++ +++++|++||++|++|+++++++++++|+++|++||++|
T Consensus 176 ~~p~~~~~~~~~~~---------d----~~~le~~i~----~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~l 238 (420)
T 2pb2_A 176 FGPKPADIIHVPFN---------D----LHAVKAVMD----DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALL 238 (420)
T ss_dssp SSSCCSCEEEECTT---------C----HHHHHHHCC----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEE
T ss_pred CCCCCCCeEEecCC---------C----HHHHHHHhc----cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEE
Confidence 11 1234443321 1 578888876 478999999999999988899999999999999999999
Q ss_pred EEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhh
Q 011777 289 IADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVI 368 (477)
Q Consensus 289 I~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l 368 (477)
|+||+|+||+++| .+++++.+++.||++||||++++|+|+|++++++++++.+....+..||++|+++++++.++|+.+
T Consensus 239 I~Dev~~g~~~~g-~~~~~~~~~~~~diit~sK~l~~G~~iG~~~~~~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~ 317 (420)
T 2pb2_A 239 VFDEVQCGMGRTG-DLFAYMHYGVTPDILTSAKALGGGFPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDII 317 (420)
T ss_dssp EEECTTTTTTTTS-SSSHHHHHTCCCSEEEECGGGGTTSCCEEEEECHHHHTTCC----CCEECCCHHHHHHHHHHHHHH
T ss_pred EEEcCCcCcccCC-cHHHHHhcCCCCCeEEecccccCCCceEEEEEhHHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHH
Confidence 9999999999999 677778889999999999999999999999999999888876567789999999999999999998
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCC
Q 011777 369 DKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGN 448 (477)
Q Consensus 369 ~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~ 448 (477)
+++++.+++++++++++++|+++...++.+..+++.|+|+++++..+. .....++.+.|+++||++.+++ .+
T Consensus 318 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~v~~~~~~------~~~~~~l~~~l~~~Gi~v~~~~--~~ 389 (420)
T 2pb2_A 318 NTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAELKPKY------KGRARDFLYAGAEAGVMVLNAG--AD 389 (420)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECGGG------TTCHHHHHHHHHHTTEECEESS--TT
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecceEEEEEECCCc------hHHHHHHHHHHHHCCCEEEeCC--CC
Confidence 878899999999999999999876556777778899999999884321 0014578889999999999875 68
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 449 VFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 449 ~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
++||+||+.++++|+++++++|++++++
T Consensus 390 ~iRl~~~~~~t~eei~~~~~~l~~~l~~ 417 (420)
T 2pb2_A 390 VMRFAPSLVVEEADIHEGMQRFAQAVGK 417 (420)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998864
No 29
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=100.00 E-value=2.6e-56 Score=456.33 Aligned_cols=404 Identities=25% Similarity=0.356 Sum_probs=324.2
Q ss_pred CCHHHHHHHHhhhcCCCcc---c-c---ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhh
Q 011777 55 PSADQVFQKRKQFLGPSIF---H-Y---YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKL 127 (477)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~---~-~---~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~ 127 (477)
|++++++++++++++.+.. . + ...|+++++++|+++||.||++||||.++.+++++||+||+|++|+.+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~ 83 (424)
T 2e7u_A 4 PISEAYFQEAKRHIPGGVSSPVRAFKAVGGTPPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVLARVRETLER 83 (424)
T ss_dssp HHHHHHHHHHHHHSGGGSSSGGGGCTTTCSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhcCCCcCCcceeccccCCCCeeEEeeecCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHHh
Confidence 5688999999999875321 1 1 1248999999999999999999999999999999999999999999999987
Q ss_pred ccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCC
Q 011777 128 LQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTW 207 (477)
Q Consensus 128 ~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~ 207 (477)
..+ ..+.++...+++++|+++++ +.++|+|++||+||++.|+++||.++++++||+++++|||++..++..++....
T Consensus 84 ~~~--~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 160 (424)
T 2e7u_A 84 GLT--FGAPSPLEVALAKKVKRAYP-FVDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGAL 160 (424)
T ss_dssp CSC--CSSCCHHHHHHHHHHHHHCT-TCCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSC
T ss_pred CCC--CCCCCHHHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCccc
Confidence 432 23677889999999999987 578999999999999999999998889999999999999998877765433211
Q ss_pred CCCCCC-CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCc
Q 011777 208 KYPIPQ-GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGG 286 (477)
Q Consensus 208 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gi 286 (477)
....+. .++.....+..+..+++ | +++|+++++.. ++++++|++||+++++|.++++++|+++|+++ ++||+
T Consensus 161 ~~~~p~~~g~~~~~~~~~~~~~~~-d----~~~le~~l~~~-~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~ 233 (424)
T 2e7u_A 161 TLGVPSSAGVPEEYAKLTLVLEYN-D----PEGLREVLKRR-GEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGV 233 (424)
T ss_dssp CBCEESSTTCCHHHHTTEEEECTT-C----HHHHHHHHHHH-GGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTC
T ss_pred ccCCCCCCCCCCccCCceEeCCCC-C----HHHHHHHHHhC-CCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCC
Confidence 110000 12110000001111222 2 57888888632 24789999999999999889999999999999 99999
Q ss_pred EEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhccc---ccccCCCCcHHHHHHHHH
Q 011777 287 VCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK---IQFNTFGGNPVCSAGGLA 363 (477)
Q Consensus 287 llI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~---~~~~t~~~~~~~~aaa~a 363 (477)
+||+||+|+|| ++| ..+.++++++.||++||||++++|+|+|++++++++++.+... .+++||++|+++++++.+
T Consensus 234 ~lI~DEv~~g~-~~g-~~~~~~~~~~~~di~s~sK~l~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a 311 (424)
T 2e7u_A 234 LLIADEVMTGF-RLA-FGGATELLGLKPDLVTLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLA 311 (424)
T ss_dssp EEEEECTTTTT-TSS-TTHHHHHHTCCCSEEEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHH
T ss_pred EEEEecCcccc-ccc-hhHHHHHhCCCcchhhhhhhhhCCcceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHH
Confidence 99999999999 788 5677788899999999999999999999999999999888652 366899999999999999
Q ss_pred HHHhhch-hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCC-----CCCccHHHHHHHHHHHHHcC
Q 011777 364 VLRVIDK-ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRK-----EKTPAKAETAVLFEKLRELG 437 (477)
Q Consensus 364 ~l~~l~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~-----~~~~~~~~~~~~~~~l~~~G 437 (477)
+|+.+++ +++.+++++++++++++|+++..+++.+..+++.|+|+++++..... .+.++.....++.+.|+++|
T Consensus 312 al~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 391 (424)
T 2e7u_A 312 TLELLEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRG 391 (424)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCC
Confidence 9999877 88999999999999999999877777766788999999998853110 01122344567889999999
Q ss_pred ceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777 438 VLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSM 474 (477)
Q Consensus 438 v~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l 474 (477)
|++.+++. . |+++++.+|++++++++++|++++
T Consensus 392 v~v~~~~~--~--~~~~~~~~t~~~i~~~l~~l~~~l 424 (424)
T 2e7u_A 392 IYWPPSNF--E--AAFLSVAHREEDVEKTLEALRKAL 424 (424)
T ss_dssp EECCSSSS--S--CEECCTTCCHHHHHHHHHHHHHHC
T ss_pred eEEeccCC--C--ceEeeccCCHHHHHHHHHHHHHhC
Confidence 99998752 2 345679999999999999998864
No 30
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=100.00 E-value=1.8e-55 Score=453.33 Aligned_cols=393 Identities=27% Similarity=0.425 Sum_probs=323.9
Q ss_pred cCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccc-ccCChHHHHHHHHHHhhCCCCC
Q 011777 77 QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT-IYLHHAIADFAEALASKMPGNL 155 (477)
Q Consensus 77 ~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~-~~~~~~~~~l~~~La~~~~~~~ 155 (477)
+.|+++++|+|+++||.||++|||+.++.+++++||+||+|++|+.+++++..+... .+..+...+++++|+++++.+.
T Consensus 31 ~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~ 110 (449)
T 3a8u_X 31 RDPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGFQYGHPLSFQLAEKITDLTPGNL 110 (449)
T ss_dssp HSCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCSCCCSSSCCCHHHHHHHHHHHTTSSTTE
T ss_pred CCCceEEeeecCEEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCC
Confidence 358999999999999999999999999999999999999999999999987542122 4667888999999999998778
Q ss_pred CEEEEeCChHHHHHHHHHHHHhcc------CCceEEEEccCccCCcccccccccCCCCCCCCC--CCCeeeecCCCCcCC
Q 011777 156 KVVYFVNSGTEANELAMLMARLST------GNLGMIALRNAYHGGSSGTIGLTALNTWKYPIP--QGEIHHVVNPDPYHG 227 (477)
Q Consensus 156 ~~v~~~~sGseA~~~Al~~ar~~~------~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 227 (477)
++|+|++||+||++.|+++++.++ ++++||+++++|||.+..++..++.+.++..+. ..++..++.|..++.
T Consensus 111 ~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~ 190 (449)
T 3a8u_X 111 NHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASN 190 (449)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGG
T ss_pred CEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccC
Confidence 899999999999999999988755 678999999999999887777655332222111 146677776665554
Q ss_pred CCC-----CCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCC
Q 011777 228 SFG-----SDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS 302 (477)
Q Consensus 228 ~~~-----~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~ 302 (477)
++. .....++++|+++++...++++++|++||+++++|.++++++|+++|+++|++||++||+||+|+|||++|
T Consensus 191 ~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g- 269 (449)
T 3a8u_X 191 AYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTG- 269 (449)
T ss_dssp TTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS-
T ss_pred ccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccC-
Confidence 321 11333468888888643224789999999999999889999999999999999999999999999999999
Q ss_pred CCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhccc---------ccccCCCCcHHHHHHHHHHHHhhchhh
Q 011777 303 HYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQK---------IQFNTFGGNPVCSAGGLAVLRVIDKER 372 (477)
Q Consensus 303 ~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~~---------~~~~t~~~~~~~~aaa~a~l~~l~~~~ 372 (477)
.++.++.+++.||++|+||++++| +|+|++++++++++.+... .+.+|+++|+++++++.++|+.+++++
T Consensus 270 ~~~~~~~~~~~~di~s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~ 349 (449)
T 3a8u_X 270 SMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKEN 349 (449)
T ss_dssp SSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHHTT
T ss_pred cchhhhhcCCCCCEEEEcccccCCCCceEEEEECHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHhcC
Confidence 677778889999999999999998 9999999999999888653 356799999999999999999888778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEE
Q 011777 373 RQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRI 452 (477)
Q Consensus 373 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi 452 (477)
+.+++++++++++++|+++ .+++.+..+++.|+++++++....... ......+.+.|+++||++.+++ +++||
T Consensus 350 ~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~---~~~~~~~~~~l~~~Gv~v~~~g---~~iRi 422 (449)
T 3a8u_X 350 LVQSVAEVAPHFEKALHGI-KGAKNVIDIRNFGLAGAIQIAPRDGDA---IVRPFEAGMALWKAGFYVRFGG---DTLQF 422 (449)
T ss_dssp HHHHHHHHHHHHHHHHHTT-TTSTTEEEEEEETTEEEEEECCBTTBS---SHHHHHHHHHHHHHTEECEEET---TEEEE
T ss_pred HHHHHHHHHHHHHHHHHHH-hcCCCeEEEeeeEEEEEEEEecCcccc---cccHHHHHHHHHHCCcEEecCC---CEEEE
Confidence 9999999999999999874 346666778889999999985432111 0012358888889999999873 79999
Q ss_pred eCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777 453 KPPMCFTKDDADFLVDALDYSMSKL 477 (477)
Q Consensus 453 ~p~~~~t~e~i~~~l~~l~~~l~~l 477 (477)
+|++.+|++|+++++++|+++++++
T Consensus 423 s~~~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 423 GPTFNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998753
No 31
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.4e-54 Score=442.78 Aligned_cols=398 Identities=28% Similarity=0.467 Sum_probs=321.6
Q ss_pred HHHHHHHHhhh-cCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCC-CHHHHHHHHHHHhhcccc-cc
Q 011777 57 ADQVFQKRKQF-LGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHC-HPDVLNAIFEQSKLLQHA-TT 133 (477)
Q Consensus 57 ~~~~~~~~~~~-~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~-~p~v~~Av~~~l~~~~~~-~~ 133 (477)
+++++++..++ +.+.... +..|+.+.+++|+++||.||++||||.++.+++++||+ ||+|++|+.+++++..+. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~~~~~ 81 (419)
T 2eo5_A 3 SRKIIEESDIYLATSTRDP-ELFPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAAN 81 (419)
T ss_dssp HHHHHHHHHHHSCCCCCSS-CCCCCCEEEEEBTEEEETTSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCCCSCS
T ss_pred hHHHHHHHHhhhccccccc-cCCCceEEeeecCEEEECCCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCcccccc
Confidence 56788888777 6654332 24689999999999999999999999999999999999 999999999999876442 23
Q ss_pred ccCChHHHHHHHHHHhhCCCC-CCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCC-CCCCCC
Q 011777 134 IYLHHAIADFAEALASKMPGN-LKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALN-TWKYPI 211 (477)
Q Consensus 134 ~~~~~~~~~l~~~La~~~~~~-~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~-~~~~~~ 211 (477)
.|.++...+++++|+++++.+ .++|+|++||+||++.|+++++.++ +++||+++++|||.+..+++.++.. .++...
T Consensus 82 ~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~~-~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~ 160 (419)
T 2eo5_A 82 DFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNTG-RKYIIAFLGGFHGRTFGSISLTASKAVQRSIV 160 (419)
T ss_dssp CSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTTS-CCEEEEETTCCCCSSHHHHHHCCSCGGGGCSS
T ss_pred ccCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHhh-CCcEEEECCCcCCCCHhhHhhcCCcccccccc
Confidence 477788899999999999876 5799999999999999999988766 7889999999999998887766543 222222
Q ss_pred C--CCCeeeecCCCCcCCCCCCC----H--H--HHHHHHH-HHHhcc-CCCCeeEEEecccCCCCCeeeCCchhHHHHHH
Q 011777 212 P--QGEIHHVVNPDPYHGSFGSD----A--A--RYAQDLQ-DHIDFG-TSGKVAGFIAETIQGVGGAVELAPGYLKLVYD 279 (477)
Q Consensus 212 ~--~~~~~~~~~~~~~~~~~~~~----~--~--~~~~~le-~~i~~~-~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~ 279 (477)
. ..++..++.++.++.+++.+ + . ..+++|+ ++++.. .++++++|++||+|+++|.++++++++++|++
T Consensus 161 ~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~ 240 (419)
T 2eo5_A 161 GPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQK 240 (419)
T ss_dssp CCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHH
T ss_pred CCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHH
Confidence 1 13566777666666555421 0 1 2357788 777632 11478999999999999988999999999999
Q ss_pred HHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhcccccccCCCCcHHHH
Q 011777 280 IVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCS 358 (477)
Q Consensus 280 l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~ 358 (477)
+|++||++||+||+|+|||++| ..++++++++.||++||||++++| +|+||++++++++ .+ ...+.+||++|++++
T Consensus 241 l~~~~~~~li~DE~~~~~g~~g-~~~~~~~~~~~~d~~t~sK~~~~G~~riG~~~~~~~~~-~~-~~~~~~t~~~n~~~~ 317 (419)
T 2eo5_A 241 LAKKYGILLVDDEVQMGLGRTG-KLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDLD-FK-PGMHSNTFGGNALAC 317 (419)
T ss_dssp HHHHHTCEEEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTTSCCEEEEEEGGGC-CC-------CCCCCHHHH
T ss_pred HHHHcCCEEEEeccccCCccCc-chhhHHhcCCCCCEEEecccccCCccceEEEEEchHhh-cC-CcccCCCCCCCHHHH
Confidence 9999999999999999999998 666778889999999999999999 9999999999987 66 446678999999999
Q ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCc
Q 011777 359 AGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGV 438 (477)
Q Consensus 359 aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv 438 (477)
+|+.++|+.+++ +.++++++++++.++|.++ +..+++.|+|+++++.. ...... +.+.|+++||
T Consensus 318 ~aa~aal~~~~~--~~~~~~~~~~~l~~~L~~~------~~~~~~~g~~~~i~~~~-------~~~~~~-~~~~l~~~Gv 381 (419)
T 2eo5_A 318 AIGSKVIDIVKD--LLPHVNEIGKIFAEELQGL------ADDVRGIGLAWGLEYNE-------KKVRDR-IIGESFKRGL 381 (419)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTS------SSEEEEETTEEEEECSC-------HHHHHH-HHHHHHHTTE
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh------hhheEeeeEEEEEEEec-------CccHHH-HHHHHHHCCC
Confidence 999999997654 7888889999888888654 45678889999987731 112245 8888999999
Q ss_pred eeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777 439 LVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL 477 (477)
Q Consensus 439 ~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l 477 (477)
++.+++ .+++||+|++.+|++++++++++|+++++++
T Consensus 382 ~v~~~~--~~~lRis~~~~~t~e~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 382 LLLPAG--RSAIRVIPPLVISEEEAKQGLDILKKVIKVV 418 (419)
T ss_dssp ECEEET--TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EEecCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 999875 6799999999999999999999999988753
No 32
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=100.00 E-value=9.4e-55 Score=448.57 Aligned_cols=403 Identities=22% Similarity=0.266 Sum_probs=307.6
Q ss_pred CCCHHHHHHHHhhhcCCCcc----ccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc
Q 011777 54 GPSADQVFQKRKQFLGPSIF----HYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ 129 (477)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~----~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~ 129 (477)
.|++++++++.+++++.+.. .+.+.|+.+++|+|+++||.||++||||.++++++++||+||+|++|+.+++++..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~~ 90 (453)
T 2cy8_A 11 TEGSVFWAQRARSVMPDGVTADTRAFDPHGLFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHGV 90 (453)
T ss_dssp CHHHHHHHHHHHHHSCCC------CCSSCCCCEEEEEBTEEEETTCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTTTC
T ss_pred CchhHHHHHHHHhhcCCCCCccccccCCCCceEEEeecCEEEECCCCEEEECcccHhhcccCCCCHHHHHHHHHHHHhCC
Confidence 45788999999999976432 13356899999999999999999999999999999999999999999999998743
Q ss_pred ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777 130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY 209 (477)
Q Consensus 130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~ 209 (477)
+ ..+.++...+++++|++.++ +.++|+|++||+||++.|+++||.++++++||+++++|||++..++..++. .+..
T Consensus 91 ~--~~~~~~~~~~la~~l~~~~~-~~~~v~~~~gg~eA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~-~~~~ 166 (453)
T 2cy8_A 91 Q--YAASHPLEVRWAERIVAAFP-SIRKLRFTGSGTETTLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNS-HFDG 166 (453)
T ss_dssp S--SCSSCHHHHHHHHHHHHHCT-TCSEEEEESCHHHHHHHHHHHHHHHHCCCEEEEECC--------------------
T ss_pred C--CCCCCHHHHHHHHHHHhhCC-CCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCcCCCchhhHhhcCC-ccCC
Confidence 2 24678889999999999987 678999999999999999999988888899999999999998877664432 0000
Q ss_pred CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777 210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI 289 (477)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI 289 (477)
+.. .++.....+..+..+++ | +++|+++++.. ++++++|++||+++++|.++++++|+++|+++|++||++||
T Consensus 167 ~~~-~g~~~~~~~~~~~~~~~-d----~~~le~~l~~~-~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI 239 (453)
T 2cy8_A 167 QPA-PGVLPETTANTLLIRPD-D----IEGMREVFANH-GSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFI 239 (453)
T ss_dssp ----------CGGGEEEECTT-C----HHHHHHHHHHH-GGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEE
T ss_pred CcC-CCCCccccCceeecCCC-C----HHHHHHHHHhc-CCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEE
Confidence 000 11110000001111222 2 57888888632 24789999999998889889999999999999999999999
Q ss_pred EcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcc-----cccccCCCCcHHHHHHHHHH
Q 011777 290 ADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQ-----KIQFNTFGGNPVCSAGGLAV 364 (477)
Q Consensus 290 ~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~-----~~~~~t~~~~~~~~aaa~a~ 364 (477)
+||+|+|| ++| ..+.++.+++.||++||||++++|+|+|++++++++++.+.. ..+++||++|+++++++.++
T Consensus 240 ~DEv~~g~-~~g-~~~~~~~~~~~~di~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aa 317 (453)
T 2cy8_A 240 LDEVISGF-RVG-NHGMQALLDVQPDLTCLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAA 317 (453)
T ss_dssp EECTTTTT-TTC-TTHHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHH
T ss_pred EecCcccc-ccC-chhhhHHhCCCCcEEEEChhhhCCcceEEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHH
Confidence 99999999 888 667778889999999999999999999999999999988865 13667999999999999999
Q ss_pred HHh-hchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEee-----C------CCCCCccHHHHHHHHHH
Q 011777 365 LRV-IDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVT-----D------RKEKTPAKAETAVLFEK 432 (477)
Q Consensus 365 l~~-l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~-----~------~~~~~~~~~~~~~~~~~ 432 (477)
|+. + .+++.+++++++++++++|+++..+++.+..+++.|+|+++++.. + ...+.++.....++.+.
T Consensus 318 l~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 396 (453)
T 2cy8_A 318 IDTIL-EDDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMA 396 (453)
T ss_dssp HHHHH-HTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHH
T ss_pred HHHHh-hhhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHH
Confidence 998 7 778999999999999999999876777767789999999999853 1 00111223345678889
Q ss_pred HHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 433 LRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 433 l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
|+++||++.++ +.+| +++.++++++++++++|++++++
T Consensus 397 l~~~Gv~v~~~----~~~~--l~~~~t~~~i~~~l~~l~~~l~~ 434 (453)
T 2cy8_A 397 LILEGVDIGGR----GSVF--LSAQHEREHVEHLVTTFDRVLDR 434 (453)
T ss_dssp HHHTTEECBTT----TEEE--CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHCCeEEeCC----CCEE--eeccCCHHHHHHHHHHHHHHHHH
Confidence 99999999653 2344 57999999999999999998764
No 33
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=100.00 E-value=1.5e-52 Score=428.23 Aligned_cols=415 Identities=30% Similarity=0.484 Sum_probs=334.8
Q ss_pred CHHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccc-cc
Q 011777 56 SADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHAT-TI 134 (477)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~-~~ 134 (477)
++++++++..++++.+.... .|+++++++|+++||.+|++||||.++.+++++||++|+|++++.+++++..+.. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~d~~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~ 80 (426)
T 1sff_A 3 SNKELMQRRSQAIPRGVGQI--HPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQV 80 (426)
T ss_dssp CHHHHHHHHHHHSCTTBCCS--EEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTT
T ss_pred hHHHHHHHHHHhcCcccccc--CCceEEecccCEEEeCCCCEEEEcccChhhcccCCCCHHHHHHHHHHHHhCCCccccc
Confidence 57788998888887654332 4889999999999999999999999999999999999999999999987654322 23
Q ss_pred cCChHHHHHHHHHHhhCCCCC-CEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCC-CCCCCCC
Q 011777 135 YLHHAIADFAEALASKMPGNL-KVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALN-TWKYPIP 212 (477)
Q Consensus 135 ~~~~~~~~l~~~La~~~~~~~-~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~-~~~~~~~ 212 (477)
+..+...+|+++|+++++.+. ++|+|++||+||++.++++++.++++++||+++++|||.....+...+.. .++....
T Consensus 81 ~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~~~~~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~ 160 (426)
T 1sff_A 81 LAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMG 160 (426)
T ss_dssp EECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSC
T ss_pred cCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCchHhhhhcCCccccccccC
Confidence 557788999999999995434 78999999999999999988777777799999999999987666554432 1221111
Q ss_pred C--CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc-CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777 213 Q--GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG-TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI 289 (477)
Q Consensus 213 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~-~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI 289 (477)
+ .++..++.+..+++ .+....+++|+++++.. +++++++|+++|+++++|.+.++++++++|.++|++||++||
T Consensus 161 ~~~~~v~~v~~~~~~~~---~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li 237 (426)
T 1sff_A 161 LMPGHVYRALYPCPLHG---ISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLI 237 (426)
T ss_dssp CCCSSEEEECCCBGGGT---BCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEE
T ss_pred CCCCCcEEeCCCccccc---cchHHHHHHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEE
Confidence 1 23444544322211 11222367888887631 124789999999888888889999999999999999999999
Q ss_pred EcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhc
Q 011777 290 ADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID 369 (477)
Q Consensus 290 ~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~ 369 (477)
+||+|+||+++| .+++++.+++.||+++|||++++|+|+|++++++++++.+....+..|++.|+++++++.++|+.++
T Consensus 238 ~De~~~~~~~~g-~~~~~~~~~~~~di~s~sK~~~~GlriG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~ 316 (426)
T 1sff_A 238 ADEVQSGAGRTG-TLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFE 316 (426)
T ss_dssp EECTTTTTTTTS-SSSGGGGTTSCCSEEEECGGGGTSSCCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHH
T ss_pred EechhhccCccc-chhhhhhcCCCCCEEEEcccccCCCceEEEEEcHHHHhhhccCCcCcCCCCCHHHHHHHHHHHHHHH
Confidence 999999999998 6677788888999999999999999999999999999888765677899999999999999999887
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCE
Q 011777 370 KERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNV 449 (477)
Q Consensus 370 ~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~ 449 (477)
++++.+++++++++++++|+++...++.+..+++.|+++++++......+.|......++.+.|+++||++.++..+.++
T Consensus 317 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~ 396 (426)
T 1sff_A 317 QENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNV 396 (426)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTTSCE
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCCCCCE
Confidence 77889999999999999999886556766677788999999985422122233445667889999999999998656789
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 450 FRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 450 iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
+||++++.++++++++++++|++++++
T Consensus 397 iRi~~~~~~~~~~i~~~~~~l~~~l~~ 423 (426)
T 1sff_A 397 LRILVPLTIEDAQIRQGLEIISQCFDE 423 (426)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEECCccCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998864
No 34
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=100.00 E-value=1.4e-52 Score=429.30 Aligned_cols=382 Identities=26% Similarity=0.391 Sum_probs=311.0
Q ss_pred Ccee-EEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccc-ccccCChHHHHHHHHHHhhCCCCC
Q 011777 78 KPLN-IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA-TTIYLHHAIADFAEALASKMPGNL 155 (477)
Q Consensus 78 ~p~~-~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~-~~~~~~~~~~~l~~~La~~~~~~~ 155 (477)
.|+. +.+++|+++||.||++|||+.++.+++++||+||+|++|+.+++++..+. ...|.++...+++++|+++++.+.
T Consensus 24 ~~~~~~~~~~g~~~~d~~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~ 103 (429)
T 1s0a_A 24 LPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPL 103 (429)
T ss_dssp CCCEEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEECHHHHHHHHHHHHHSCTTC
T ss_pred CCceeEEeeeeeEEEeCCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCCC
Confidence 4655 89999999999999999999999999999999999999999999875432 224667778999999999998778
Q ss_pred CEEEEeCChHHHHHHHHHHHHhccC-----CceEEEEccCccCCcccccccccCCC-CCCCCC--CCCeeeecCCCCcC-
Q 011777 156 KVVYFVNSGTEANELAMLMARLSTG-----NLGMIALRNAYHGGSSGTIGLTALNT-WKYPIP--QGEIHHVVNPDPYH- 226 (477)
Q Consensus 156 ~~v~~~~sGseA~~~Al~~ar~~~~-----~~~ii~~~~~yhG~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~- 226 (477)
++|+|++||+||++.|+++++.+++ +++||+++++|||++..++..++... ++.... ..++..++.+....
T Consensus 104 ~~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (429)
T 1s0a_A 104 ECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMD 183 (429)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCccccc
Confidence 8999999999999999998876544 78999999999999887766654221 111111 12455555443211
Q ss_pred CCCCCCHHHHHHHHHHHHhccCCCCeeEEEeccc-CCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCc
Q 011777 227 GSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETI-QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYW 305 (477)
Q Consensus 227 ~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi-~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~ 305 (477)
..++. ..+++|+++++.. ++++++|++||+ +|++|.++++++++++|.++|++||++||+||+|+|||++| ..+
T Consensus 184 ~~~~~---~d~~~l~~~l~~~-~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g-~~~ 258 (429)
T 1s0a_A 184 GEWDE---RDMVGFARLMAAH-RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTG-KLF 258 (429)
T ss_dssp CCCCG---GGGHHHHHHHHHH-TTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTS-SSS
T ss_pred ccchH---HHHHHHHHHHHhC-CCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccc-hHH
Confidence 11210 1147788887632 247899999999 99999999999999999999999999999999999999998 566
Q ss_pred cccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhccc-----ccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHH
Q 011777 306 GFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQK-----IQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCAD 379 (477)
Q Consensus 306 ~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~~-----~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~ 379 (477)
+++..++.||++||||++++| +|+|++++++++++.+... .+.+|+++|+++++++.++|+.++++++.+++++
T Consensus 259 ~~~~~~~~~d~~t~sK~l~~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~~~~~~~~~~ 338 (429)
T 1s0a_A 259 ACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVAD 338 (429)
T ss_dssp GGGGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HhhhcCCCCCEEEecccccCCCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 778889999999999999999 9999999999998887653 2567999999999999999998877788899999
Q ss_pred HHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCc
Q 011777 380 VGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFT 459 (477)
Q Consensus 380 ~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t 459 (477)
++++++++|+++.. ++.+..+++.|+++++++... .....+.+.|+++||++.+. ++++||+|++.+|
T Consensus 339 ~~~~l~~~L~~l~~-~~~~~~~~~~g~~~~~~~~~~--------~~~~~l~~~l~~~Gi~v~~~---~~~iRis~~~~~t 406 (429)
T 1s0a_A 339 IEVQLREQLAPARD-AEMVADVRVLGAIGVVETTHP--------VNMAALQKFFVEQGVWIRPF---GKLIYLMPPYIIL 406 (429)
T ss_dssp HHHHHHHHHGGGGG-CTTEEEEEEETTEEEEEESSC--------BCHHHHHHHHHHTTEECCCB---TTEEEECCCTTCC
T ss_pred HHHHHHHHHHHHhc-CCCEEEEEEeeEEEEEEECCc--------ccHHHHHHHHHHCCCEEecc---CCEEEEECCCCCC
Confidence 99999999987642 555666788899999987421 01346788888999999874 4799999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 011777 460 KDDADFLVDALDYSMSK 476 (477)
Q Consensus 460 ~e~i~~~l~~l~~~l~~ 476 (477)
++|+++++++|++++++
T Consensus 407 ~e~i~~~~~~l~~~~~~ 423 (429)
T 1s0a_A 407 PQQLQRLTAAVNRAVQD 423 (429)
T ss_dssp HHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998754
No 35
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=100.00 E-value=1.1e-52 Score=424.58 Aligned_cols=380 Identities=27% Similarity=0.515 Sum_probs=323.1
Q ss_pred HHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCCh
Q 011777 59 QVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHH 138 (477)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~ 138 (477)
+++++.++++... +...|+++++|+|+++||.||++||||.++++++++||+||+|.+++.+++++..+....+..+
T Consensus 2 ~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~ 78 (392)
T 3ruy_A 2 DIIELTDTYGANN---YHPLPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRAFHSD 78 (392)
T ss_dssp CHHHHHHHHBCTT---CCCCSCEECEEEBTEEECTTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSEET
T ss_pred hHHHHHHhhhhcc---CCCCCceEEeeeeCEEEeCCCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccccccccCCH
Confidence 3566677777543 3456899999999999999999999999999999999999999999999998876655556778
Q ss_pred HHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc--------cCCceEEEEccCccCCcccccccccCCCCCCC
Q 011777 139 AIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS--------TGNLGMIALRNAYHGGSSGTIGLTALNTWKYP 210 (477)
Q Consensus 139 ~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~--------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~ 210 (477)
...+++++|+++++ .++++|++||++|++.|+++++.. +++++||++.++|||.+..++..++...+...
T Consensus 79 ~~~~l~~~la~~~g--~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (392)
T 3ruy_A 79 QLGPWYEKVAKLTN--KEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRG 156 (392)
T ss_dssp THHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTT
T ss_pred HHHHHHHHHHHhcC--CCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccc
Confidence 89999999999985 579999999999999999998876 56789999999999999888887765444332
Q ss_pred CCC--CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEE
Q 011777 211 IPQ--GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVC 288 (477)
Q Consensus 211 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gill 288 (477)
..+ .++..++ ++ | +++|+++++ +++++|+++|++|++|.+.++++|+++|.++|++||++|
T Consensus 157 ~~~~~~~~~~~~--------~~-d----~~~l~~~l~----~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~l 219 (392)
T 3ruy_A 157 FGPMLPGIIVIP--------YG-D----LEALKAAIT----PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLF 219 (392)
T ss_dssp CCSCCSSEEEEC--------TT-C----HHHHHHHCC----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEE
T ss_pred cCCCCCCCeeeC--------cc-c----HHHHHHHhc----cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEE
Confidence 221 1222222 11 1 578888876 579999999999999999989999999999999999999
Q ss_pred EEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHh
Q 011777 289 IADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRV 367 (477)
Q Consensus 289 I~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~ 367 (477)
|+||+|+||+++| ..+..+.+++.||++||||+++|| +|+|++++++++++.+....+.++|+.|+++++++.++|+.
T Consensus 220 i~De~~~~~~~~g-~~~~~~~~~~~~d~~~~SK~l~gG~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~ 298 (392)
T 3ruy_A 220 VADEIQTGLGRTG-KVFACDWDNVTPDMYILGKALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEV 298 (392)
T ss_dssp EEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTTSCCEEEEECHHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHH
T ss_pred EEeechhCCCccc-cchhhhccCCCCCEEEEchhhhCChhhhEEEEECHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999 677788889999999999999999 99999999999999888777888999999999999999998
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCC
Q 011777 368 IDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHG 447 (477)
Q Consensus 368 l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~ 447 (477)
++.+++.++++++.+++++.|+++ ..+.+..+++.|.++++.+.. ...++.+.|+++||++.+++ .
T Consensus 299 ~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~g~~~~~~~~~----------~~~~l~~~l~~~gi~v~~~~--~ 364 (392)
T 3ruy_A 299 LEEEKLTERSLQLGEKLVGQLKEI--DNPMITEVRGKGLFIGIELNE----------PARPYCEQLKAAGLLCKETH--E 364 (392)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHTTC--CCTTEEEEEEETTEEEEEESS----------CSHHHHHHHHTTTEECCCBT--T
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHh--cCCCceEEEeeeeEEEEEEcc----------hHHHHHHHHHHCCcEEecCC--C
Confidence 877888999999999999988765 235567778889999988632 13568889999999999875 6
Q ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777 448 NVFRIKPPMCFTKDDADFLVDALDYSMS 475 (477)
Q Consensus 448 ~~iRi~p~~~~t~e~i~~~l~~l~~~l~ 475 (477)
+++||+|++.++++|+++++++|+++++
T Consensus 365 ~~iRi~~~~~~~~~~i~~~~~~l~~~l~ 392 (392)
T 3ruy_A 365 NVIRIAPPLVISEEDLEWAFQKIKAVLS 392 (392)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhC
Confidence 8999999999999999999999998863
No 36
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=100.00 E-value=3.8e-52 Score=422.48 Aligned_cols=373 Identities=31% Similarity=0.503 Sum_probs=321.0
Q ss_pred ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCC
Q 011777 76 YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNL 155 (477)
Q Consensus 76 ~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~ 155 (477)
...|+++++|+|+++||.+|++||||.++.+++++||+||+|.+++.+++++..+....+.++...+++++|+++++.
T Consensus 19 ~~~~~~~~~~~g~~~~~~~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~-- 96 (406)
T 4adb_A 19 APAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFA-- 96 (406)
T ss_dssp CCCSSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSCCHHHHHHHHHHHHHSSC--
T ss_pred CCCCceEEeeccCEEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhcccccCCcCCHHHHHHHHHHHhhCCC--
Confidence 345899999999999999999999999999999999999999999999998866555556778899999999999954
Q ss_pred CEEEEeCChHHHHHHHHHHHHhc------cCCceEEEEccCccCCcccccccccCCCCCCCCCC--CCeeeecCCCCcCC
Q 011777 156 KVVYFVNSGTEANELAMLMARLS------TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQ--GEIHHVVNPDPYHG 227 (477)
Q Consensus 156 ~~v~~~~sGseA~~~Al~~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 227 (477)
++++|++||++|++.|+++++.+ +++++||+++++||+....+...++...+.....+ .++..++.++
T Consensus 97 ~~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---- 172 (406)
T 4adb_A 97 DRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYND---- 172 (406)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTTC----
T ss_pred CeEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCCc----
Confidence 69999999999999999988765 67789999999999998888777765443322221 2343333221
Q ss_pred CCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc
Q 011777 228 SFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF 307 (477)
Q Consensus 228 ~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~ 307 (477)
+++|+++++ +++++|+++|++++||+++++++++++|.++|++||++||+||+|+||+++| ..+++
T Consensus 173 ---------~~~l~~~l~----~~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g-~~~~~ 238 (406)
T 4adb_A 173 ---------INSASALID----DSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTG-ELYAY 238 (406)
T ss_dssp ---------HHHHHTTCS----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTS-SSSHH
T ss_pred ---------HHHHHHHhc----CCeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc-hhHHH
Confidence 577877775 5789999999999999888899999999999999999999999999999999 67777
Q ss_pred cccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Q 011777 308 ETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGR 387 (477)
Q Consensus 308 ~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~ 387 (477)
+.+++.||++||||++++|+|+|++++++++++.+....+.++++.|+++++++.++|+.++++++.++++++++++++.
T Consensus 239 ~~~~~~~d~~t~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~ 318 (406)
T 4adb_A 239 MHYGVTPDLLTTAKALGGGFPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVER 318 (406)
T ss_dssp HHHTCCCSEEEECGGGGTTSCCEEEEECHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCEEEechhhcCCCCeEEEEEcHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999998877788899999999999999999887788999999999999999
Q ss_pred HHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHH
Q 011777 388 LRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLV 467 (477)
Q Consensus 388 L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l 467 (477)
|+++...++.+.++++.|+++++++..+. .....++.+.|+++||++.+++ .+++||+|++.++++|+++++
T Consensus 319 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~l~~~gi~v~~~~--~~~iRi~~~~~~~~e~i~~~~ 390 (406)
T 4adb_A 319 LNTINHRYGLFSEVRGLGLLIGCVLNADY------AGQAKQISQEAAKAGVMVLIAG--GNVVRFAPALNVSEEEVTTGL 390 (406)
T ss_dssp HHHHHHHHCCEEEEEEETTEEEEEECTTT------TTCHHHHHHHHHHTTEECEESS--TTEEEECCCTTCCHHHHHHHH
T ss_pred HHHHHHhCCCceEEEEEEEEEEEEEeCCc------HHHHHHHHHHHHHCCcEEeecC--CCeEEEECCCCCCHHHHHHHH
Confidence 99987666777888889999999985321 0124678899999999999875 689999999999999999999
Q ss_pred HHHHHHHhh
Q 011777 468 DALDYSMSK 476 (477)
Q Consensus 468 ~~l~~~l~~ 476 (477)
++|++++++
T Consensus 391 ~~l~~~l~~ 399 (406)
T 4adb_A 391 DRFAAACEH 399 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998864
No 37
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=100.00 E-value=6.2e-49 Score=397.98 Aligned_cols=371 Identities=30% Similarity=0.539 Sum_probs=305.1
Q ss_pred ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCC
Q 011777 76 YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNL 155 (477)
Q Consensus 76 ~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~ 155 (477)
...|+.+.+++|+++||.||++||||.++++++++||++|++.+++.+++++..+....|..+...+++++|+++++ .
T Consensus 20 ~~~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g--~ 97 (397)
T 2ord_A 20 SRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWNRPQMELAELLSKNTF--G 97 (397)
T ss_dssp CCCSCEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCTTSEEHHHHHHHHHHHHTTT--S
T ss_pred cCCCceEEeeecCEEEECCCCEEEECCccccccccCCCCHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHhcC--C
Confidence 35689999999999999999999999999999999999999999999999876543334556788999999999985 5
Q ss_pred CEEEEeCChHHHHHHHHHHHHhc-----cCCceEEEEccCccCCcccccccccCCCCCCCC-C-CCCeeeecCCCCcCCC
Q 011777 156 KVVYFVNSGTEANELAMLMARLS-----TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPI-P-QGEIHHVVNPDPYHGS 228 (477)
Q Consensus 156 ~~v~~~~sGseA~~~Al~~ar~~-----~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~ 228 (477)
++++|++||++|++.+++.++.+ +++++||+++++||+....++...+...++..+ + ..++..++.
T Consensus 98 ~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~------- 170 (397)
T 2ord_A 98 GKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF------- 170 (397)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT-------
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC-------
Confidence 79999999999999999988654 466789999999999887555444322111000 0 013333322
Q ss_pred CCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccc
Q 011777 229 FGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFE 308 (477)
Q Consensus 229 ~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~ 308 (477)
+ | +++|+++++ +++++|+++|+++++|.++++.+++++|.++|++||++||+||+|+||+++| ..+.++
T Consensus 171 -~-d----~~~l~~~l~----~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g-~~~~~~ 239 (397)
T 2ord_A 171 -N-N----VEDLRRKMS----EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTG-KLFAYQ 239 (397)
T ss_dssp -T-C----HHHHHHHCC----TTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS-SSSHHH
T ss_pred -C-C----HHHHHHHhh----cCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCc-cchhhh
Confidence 1 1 578888775 4789999999999999878899999999999999999999999999999988 566666
Q ss_pred ccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Q 011777 309 TQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRL 388 (477)
Q Consensus 309 ~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L 388 (477)
.+++.||+++|||++++|+|+|+++++++++ .+....+..+++.|+++++++.++|+.++++++.++++++++++++.|
T Consensus 240 ~~~~~~d~~s~sK~~~~G~r~G~~~~~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L 318 (397)
T 2ord_A 240 KYGVVPDVLTTAKGLGGGVPIGAVIVNERAN-VLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKL 318 (397)
T ss_dssp HHTCCCSEEEECGGGGTTSCCEEEEECSTTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHH
T ss_pred hhCCCCCeeeeccccCCCcCeEEEEEchHhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 7788899999999999999999999999877 665545678899999999999999998877788999999999999999
Q ss_pred HHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHH
Q 011777 389 RTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVD 468 (477)
Q Consensus 389 ~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~ 468 (477)
+++...++.+..+++.|.++++++.... ...++.+.|+++||++.+++ .+++||+|++.++++|++++++
T Consensus 319 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~l~~~l~~~gi~v~~~~--~~~iRis~~~~~~~e~i~~~~~ 388 (397)
T 2ord_A 319 QEMKEEYDVVADVRGMGLMIGIQFREEV--------SNREVATKCFENKLLVVPAG--NNTIRFLPPLTVEYGEIDLAVE 388 (397)
T ss_dssp HHHHHHCTTEEEEEEETTEEEEEECTTS--------CHHHHHHHHHHTTEECEEET--TTEEEECCCTTCCHHHHHHHHH
T ss_pred HHHHHhCCceEEEEEEeEEEEEEECChH--------HHHHHHHHHHHCCCEEccCC--CCEEEEECCcCCCHHHHHHHHH
Confidence 8875456666667788999998874210 24568888999999999875 6799999999999999999999
Q ss_pred HHHHHHhhC
Q 011777 469 ALDYSMSKL 477 (477)
Q Consensus 469 ~l~~~l~~l 477 (477)
+|+++++++
T Consensus 389 ~l~~~l~~~ 397 (397)
T 2ord_A 389 TLKKVLQGI 397 (397)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhhC
Confidence 999998753
No 38
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=100.00 E-value=6.6e-48 Score=390.07 Aligned_cols=386 Identities=32% Similarity=0.541 Sum_probs=308.2
Q ss_pred HHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCC
Q 011777 58 DQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLH 137 (477)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~ 137 (477)
+++.+..++|++.....+...|+.+.+++|+++||.+|+.||||.++.+++++||++|+|.+++.+++++..+....|..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~ 86 (395)
T 1vef_A 7 EDWRALLEAEKTLDSGVYNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPT 86 (395)
T ss_dssp --CHHHHHHHHHHBCSCSCCCSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTSCC
T ss_pred HHHHHHHHhhhhhcccccCCCCccEEecccCEEEeCCCCEEEEccCccccccCCCCCHHHHHHHHHHHHhCCCCccccCC
Confidence 45666667775411011334688999999999999999999999999998999999999999999999875543334567
Q ss_pred hHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCC-CCC-CC
Q 011777 138 HAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYP-IPQ-GE 215 (477)
Q Consensus 138 ~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~-~~~-~~ 215 (477)
+...+++++|+++++.+.+++++++||++|++.+++.++.++++++||+++++||+.....+...+....... .+. .+
T Consensus 87 ~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~ 166 (395)
T 1vef_A 87 PMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEP 166 (395)
T ss_dssp HHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSC
T ss_pred HHHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCC
Confidence 8899999999999976678999999999999999998765557788999999999987755544332211000 010 12
Q ss_pred eeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc
Q 011777 216 IHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT 295 (477)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~ 295 (477)
+..++. . | +++|+++++ +++++|+++|+++++|.+.++++++++|.++|++||++||+||+|+
T Consensus 167 ~~~~~~--------~-d----~~~l~~~i~----~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~ 229 (395)
T 1vef_A 167 VEFIPY--------N-D----VEALKRAVD----EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQT 229 (395)
T ss_dssp EEEECT--------T-C----HHHHHHHCC----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred eeEeCC--------C-c----HHHHHHHhc----cCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 222211 1 1 578888776 4689999999998899888999999999999999999999999999
Q ss_pred CccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHH
Q 011777 296 GFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQA 375 (477)
Q Consensus 296 gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~ 375 (477)
||++.| ..+.++..++.+|+++|||.+++|+|+|++++++++++.+....+.++++.|+++++++.++++.+.++++.+
T Consensus 230 ~~~~~g-~~~~~~~~~~~~d~~s~sK~~~~g~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~ 308 (395)
T 1vef_A 230 GMGRTG-KRFAFEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWE 308 (395)
T ss_dssp TTTTTS-SSSTHHHHTCCCSEEEECGGGGTTSSCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHH
T ss_pred CCccCC-chhHhhhcCCCCCEEEEcccccCCCceEEEEehHHHHhhhccCCcCCCcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 999888 5666677788899999999999999999999999998888765567889999999999999999887667888
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCCCCEEEEeC
Q 011777 376 HCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLHGNVFRIKP 454 (477)
Q Consensus 376 ~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~~~iRi~p 454 (477)
+++++.++++++|+++. .+.+..+++.|.++++++..+ ..++.+.|+ ++||.+.+++ .+++||++
T Consensus 309 ~~~~~~~~l~~~l~~~~--~~~~~~~~~~g~~~~~~~~~~----------~~~l~~~l~~~~gi~v~~~~--~~~iRi~~ 374 (395)
T 1vef_A 309 RAAELGPWFMEKLRAIP--SPKIREVRGMGLMVGLELKEK----------AAPYIARLEKEHRVLALQAG--PTVIRFLP 374 (395)
T ss_dssp HHHHHHHHHHHHHHTSC--CTTEEEEEEETTEEEEEESSC----------SHHHHHHHHHHHCEECEESS--TTEEEECC
T ss_pred HHHHHHHHHHHHHHHhh--cCceEEEEEEEEEEEEEEcCh----------HHHHHHHHHHHCCeEEecCC--CCEEEEeC
Confidence 89999999988887652 233445677888999987321 346788888 8999999864 68999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHh
Q 011777 455 PMCFTKDDADFLVDALDYSMS 475 (477)
Q Consensus 455 ~~~~t~e~i~~~l~~l~~~l~ 475 (477)
++.++++++++++++|+++++
T Consensus 375 ~~~~~~~~i~~~~~~l~~~l~ 395 (395)
T 1vef_A 375 PLVIEKEDLERVVEAVRAVLA 395 (395)
T ss_dssp CTTCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHhC
Confidence 999999999999999998763
No 39
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=100.00 E-value=1.6e-45 Score=369.78 Aligned_cols=360 Identities=32% Similarity=0.551 Sum_probs=292.0
Q ss_pred cCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCC
Q 011777 77 QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLK 156 (477)
Q Consensus 77 ~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~ 156 (477)
..|+.+.+|+|.++||.+|+.||||.++.+.+++||.+|++.+++.+++++..+....|..+...+++++|+++++.. +
T Consensus 9 ~~~~~~~~~~g~~~~~~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~~g~~-~ 87 (375)
T 2eh6_A 9 RLPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLYENPWQEELAHKLVKHFWTE-G 87 (375)
T ss_dssp CEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCCTTBCCHHHHHHHHHHHHTSSSC-E
T ss_pred CCCccEEeeecCEEEeCCCCEEEEcCCcccccccCCCCHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHhhcCCC-C
Confidence 468899999999999999999999999998889999999999999999987543333466677889999999998652 8
Q ss_pred EEEEeCChHHHHHHHHHHHHhcc-----CCceEEEEccCccCCcccccccccCCCCCCCCC--CCCeeeecCCCCcCCCC
Q 011777 157 VVYFVNSGTEANELAMLMARLST-----GNLGMIALRNAYHGGSSGTIGLTALNTWKYPIP--QGEIHHVVNPDPYHGSF 229 (477)
Q Consensus 157 ~v~~~~sGseA~~~Al~~ar~~~-----~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 229 (477)
++++++||++|++.++++++.++ |+++|++.+++||++........+...+..... ..++..++.+
T Consensus 88 ~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 160 (375)
T 2eh6_A 88 KVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLN------- 160 (375)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECTT-------
T ss_pred eEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCCc-------
Confidence 99999999999999999765443 558999999999999877666544332211110 1233333211
Q ss_pred CCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccc
Q 011777 230 GSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFET 309 (477)
Q Consensus 230 ~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~ 309 (477)
| +++|+++++ +++++|+++|+++++|.+.++++++++|.++|++||+++|+||+|++|++++ ..+.++.
T Consensus 161 --d----~~~l~~~l~----~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~ 229 (375)
T 2eh6_A 161 --D----IDSVYKLLD----EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTG-EFYAYQH 229 (375)
T ss_dssp --C----HHHHHTTCC----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS-SSSGGGG
T ss_pred --h----HHHHHHHhc----CCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCC-cchhhhh
Confidence 1 477777665 4789999999999999888999999999999999999999999999999887 4556677
Q ss_pred cCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 011777 310 QGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLR 389 (477)
Q Consensus 310 ~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~ 389 (477)
++..+|+++|||.+++|+|+|++++++++++.+....+..+++.|+++++++.++|+.++ ++.++++++++++.+.|+
T Consensus 230 ~~~~~d~~s~SK~~~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~ 307 (375)
T 2eh6_A 230 FNLKPDVIALAKGLGGGVPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEVE--KLLPHVREVGNYFKEKLK 307 (375)
T ss_dssp GTCCCSEEEECGGGGTTSCCEEEEEEHHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEcccccCCCCeEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999998888765567888999999999999998765 677888888888888887
Q ss_pred HHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHH
Q 011777 390 TLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDA 469 (477)
Q Consensus 390 ~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~ 469 (477)
++ +. ..+++.|.++++++..+ ..++.+.|+++||.+.+++ .+++||++++.++++++++++++
T Consensus 308 ~~----~~-~~~~~~g~~~~~~~~~~----------~~~~~~~l~~~gi~~~~~~--~~~iRi~~~~~~~~~~i~~~~~~ 370 (375)
T 2eh6_A 308 EL----GK-GKVKGRGLMLGLELERE----------CKDYVLKALEKGLLINCTA--GKVLRFLPPLIIQKEHIDRAISV 370 (375)
T ss_dssp HT----TS-SEEEEETTEEEEECSSC----------CHHHHHHHHHTTEECEEET--TTEEEECCCTTCCHHHHHHHHHH
T ss_pred HH----hc-CCceEEEEEEEEEEcCc----------HHHHHHHHHHCCCEEecCC--CCEEEEECCCCCCHHHHHHHHHH
Confidence 64 22 34567788988877321 2467888889999998864 67899999999999999999999
Q ss_pred HHHHH
Q 011777 470 LDYSM 474 (477)
Q Consensus 470 l~~~l 474 (477)
|++++
T Consensus 371 l~~~l 375 (375)
T 2eh6_A 371 LREIL 375 (375)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 98764
No 40
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=100.00 E-value=2e-40 Score=338.38 Aligned_cols=360 Identities=12% Similarity=0.075 Sum_probs=264.1
Q ss_pred CceeEEeeeccEEEeCC--CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCC--C
Q 011777 78 KPLNIVEGKMQYLFDEN--GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMP--G 153 (477)
Q Consensus 78 ~p~~~~~g~G~~~~d~d--G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~--~ 153 (477)
.+++..+|+|+++||.+ |+.||||..+. . ..+++|+|++|+.++++...+.......+...++++++++.++ .
T Consensus 41 ~~~~~~~g~g~~~~d~~~~g~~~i~~~~~~--~-~~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~l~~~l~~~~g~~~ 117 (421)
T 3l8a_A 41 TTRPDRLNQFTYKWKTSENNPELLQMWVAD--M-DFLPVPEIKEAIINYGREHIFGYNYFNDDLYQAVIDWERKEHDYAV 117 (421)
T ss_dssp SCCCCCTTTTBTTTGGGTTCTTCEECCSSC--C-CSCCCHHHHHHHHHHHHHCCSSCBCCCHHHHHHHHHHHHHHHCCCC
T ss_pred CcccccCCCCCccccccCCCCCeeecccCC--C-CCCCCHHHHHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 45777899999999999 89999997663 3 3358999999999999875443333345667888888888765 4
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCC-cCCCCCCC
Q 011777 154 NLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDP-YHGSFGSD 232 (477)
Q Consensus 154 ~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 232 (477)
+.++|+|++||+||++.|++.+.. ++++|+++.++||++.......+. ..+.+|.. ....+..|
T Consensus 118 ~~~~v~~~~g~~ea~~~a~~~~~~--~gd~Vi~~~~~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~~d 182 (421)
T 3l8a_A 118 VKEDILFIDGVVPAISIALQAFSE--KGDAVLINSPVYYPFARTIRLNDH-------------RLVENSLQIINGRFEID 182 (421)
T ss_dssp CGGGEEEESCHHHHHHHHHHHHSC--TEEEEEEEESCCHHHHHHHHHTTE-------------EEEEEECEEETTEEECC
T ss_pred CHHHEEEcCCHHHHHHHHHHHhcC--CCCEEEECCCCcHHHHHHHHHCCC-------------EEEeccccccCCCeeeC
Confidence 567899999999999999998743 557899999999997765544322 11111111 00001111
Q ss_pred HHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc-----
Q 011777 233 AARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF----- 307 (477)
Q Consensus 233 ~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~----- 307 (477)
+++|+++++. +++++|++++++|++| +++++++|++|+++|++||++||+||+|++|+++|..+..+
T Consensus 183 ----~~~le~~i~~---~~~~~vil~~p~nptG-~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 254 (421)
T 3l8a_A 183 ----FEQLEKDIID---NNVKIYLLCSPHNPGG-RVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDA 254 (421)
T ss_dssp ----HHHHHHHHHH---TTEEEEEEESSBTTTT-BCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCT
T ss_pred ----HHHHHHHhhc---cCCeEEEECCCCCCCC-CcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCc
Confidence 5888888862 4788999999999999 67788899999999999999999999999999887322222
Q ss_pred cccCCCcceeeeccccc-CccceEEEEeC-HHHHHhhcccc-cccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHH
Q 011777 308 ETQGVIPDIVTMAKGIG-NGLPLGAVVTT-PEIANVMAQKI-QFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGS 382 (477)
Q Consensus 308 ~~~gv~pDivt~sK~lg-~G~pig~v~~~-~~~~~~~~~~~-~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~ 382 (477)
+..+..+++.++||+++ +|+|+|+++++ +++++.+.... ..+++++|+++++++.++++..++ +++.++++++.+
T Consensus 255 ~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~~ 334 (421)
T 3l8a_A 255 SYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYGKPWLEELKTVIEGNIK 334 (421)
T ss_dssp TGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred hhcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 22456677889999998 79999999998 89988887654 345668999999999999985322 334445555555
Q ss_pred HHHHHHHHHHHhCCCceeeeccceeEE-EEEeeCCCCCCccHHHHHHHHHHHHH-cCceeeccCCC----CCEEEEeCCC
Q 011777 383 HLLGRLRTLQERHDIIGDVRGRGLMVG-MELVTDRKEKTPAKAETAVLFEKLRE-LGVLVGKGGLH----GNVFRIKPPM 456 (477)
Q Consensus 383 ~l~~~L~~l~~~~~~~~~v~g~g~~~~-i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~p~~ 456 (477)
++++.|+++ +.+..+++.|.++. +++.... ....++.+.|++ +||++.++..+ .+++||+++
T Consensus 335 ~l~~~L~~~----~~i~~~~~~~~~~~~v~~~~~~-------~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~- 402 (421)
T 3l8a_A 335 LVIKELEAK----TKIKVMEPEGTYLVWLDFSAYA-------IAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVA- 402 (421)
T ss_dssp HHHHHHHHH----CSCEEECCSBSSEEEEECGGGT-------CCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC-
T ss_pred HHHHHHHhC----CCceEeCCCeeEEEEEeccccC-------CCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEec-
Confidence 555555443 55666777777665 7764311 012357778865 59999886432 489999877
Q ss_pred CCcHHHHHHHHHHHHHHHhh
Q 011777 457 CFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 457 ~~t~e~i~~~l~~l~~~l~~ 476 (477)
+++++|++++++|++++++
T Consensus 403 -~~~~~i~~~l~~l~~~l~~ 421 (421)
T 3l8a_A 403 -TPKNTVQEALSRIISVFGK 421 (421)
T ss_dssp -SCHHHHHHHHHHHHHHC--
T ss_pred -CCHHHHHHHHHHHHHHHhC
Confidence 6899999999999998753
No 41
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=100.00 E-value=6.3e-38 Score=320.45 Aligned_cols=368 Identities=15% Similarity=0.109 Sum_probs=271.9
Q ss_pred CCHHHHHHHHhhhcCCCccccccCceeEE-eeeccEEEeCCCCEEEeecCCcccccCC-CCCHHHHHHHHHHHhhccccc
Q 011777 55 PSADQVFQKRKQFLGPSIFHYYQKPLNIV-EGKMQYLFDENGRRYLDAFAGIVTVSCG-HCHPDVLNAIFEQSKLLQHAT 132 (477)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~G~~~~d~dG~~ylD~~~g~~~~~lG-h~~p~v~~Av~~~l~~~~~~~ 132 (477)
++++++.++..+....++. ++.+..+. +++|+++|| ||++||||.+|. ++| |+||+|++++.+++.+.....
T Consensus 25 ~~~~~~~~~~~~~~~~g~~--~r~~~~~~~~~~g~~~~~-~g~~~id~~~~~---~lg~~~~~~v~~a~~~~~~~~~~~~ 98 (427)
T 2w8t_A 25 SKFDGLIAERQKLLDSGVT--DPFAIVMEQVKSPTEAVI-RGKDTILLGTYN---YMGMTFDPDVIAAGKEALEKFGSGT 98 (427)
T ss_dssp GGGHHHHHHHHHHHHTTCC--CTTCCCCSEEEETTEEEE-TTEEEEECSCCC---TTCGGGCHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHHHHHcCCc--ceeeeeccccCCCceEee-CCceEEEEECcc---cccCCCCHHHHHHHHHHHHHhCCCC
Confidence 3567888877777665521 23345667 999999999 999999999884 488 689999999999998733211
Q ss_pred c-----ccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCC
Q 011777 133 T-----IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTW 207 (477)
Q Consensus 133 ~-----~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~ 207 (477)
. .+..+...+++++|+++++. +.+++++||++|++.+++.+. .+++.|++ ...+|+.........+
T Consensus 99 ~~~~~~~G~~~~~~~l~~~la~~~g~--~~~i~~~sGs~a~~~al~~l~--~~gd~vl~-~~~~h~~~~~~~~~~g---- 169 (427)
T 2w8t_A 99 CGSRMLNGTFHDHMEVEQALRDFYGT--TGAIVFSTGYMANLGIISTLA--GKGEYVIL-DADSHASIYDGCQQGN---- 169 (427)
T ss_dssp CSCTTTTCCCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHHS--CTTCEEEE-ETTCCHHHHHHHHHSC----
T ss_pred cccccccCCcHHHHHHHHHHHHHhCC--CceEEecCcHHHHHHHHHHhc--CCCCEEEE-CCcccHHHHHHHHHcC----
Confidence 1 12457789999999999854 578899999999999988652 23444555 5555655443333322
Q ss_pred CCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcE
Q 011777 208 KYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGV 287 (477)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gil 287 (477)
...+.++. . | +++|+++++....+++++|+++++++++|.+.+ +++|.++|++||++
T Consensus 170 --------~~~~~~~~------~-d----~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~----l~~l~~l~~~~g~~ 226 (427)
T 2w8t_A 170 --------AEIVRFRH------N-S----VEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAP----LKEMVAVAKKHGAM 226 (427)
T ss_dssp --------SEEEEECT------T-C----HHHHHHHHHTSCSSSCEEEEEESEETTTTEECC----HHHHHHHHHHTTCE
T ss_pred --------CeeEEeCC------C-C----HHHHHHHHHhccCCCCeEEEEcCCCCCCCCccC----HHHHHHHHHHcCCE
Confidence 22222221 1 1 588998887432227899999999999998876 99999999999999
Q ss_pred EEEcCcccCc--cCCCCCCccccccCCCcc----eeeecccccCccceEEEEeCHHHHHhhcccc--cccCCCCcHHHHH
Q 011777 288 CIADEVQTGF--GRTGSHYWGFETQGVIPD----IVTMAKGIGNGLPLGAVVTTPEIANVMAQKI--QFNTFGGNPVCSA 359 (477)
Q Consensus 288 lI~DEv~~gf--gr~G~~~~~~~~~gv~pD----ivt~sK~lg~G~pig~v~~~~~~~~~~~~~~--~~~t~~~~~~~~a 359 (477)
||+||+|+++ +++| .. ..+.+++.+| +.||||++| ++.|++++++++++.+.... +..+++.|++.++
T Consensus 227 li~Dea~~~~~~~~~g-~~-~~~~~~~~~~~di~~~s~sK~~g--~~gG~v~~~~~l~~~l~~~~~~~~~~~~~~~~~~a 302 (427)
T 2w8t_A 227 VLVDEAHSMGFFGPNG-RG-VYEAQGLEGQIDFVVGTFSKSVG--TVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVA 302 (427)
T ss_dssp EEEECTTTTTTSSTTS-CC-HHHHTTCTTCCSEEEEESSSTTC--SCCEEEEECCTTGGGGGGTCHHHHSSCCCCHHHHH
T ss_pred EEEECCccccccCCCC-Cc-hHhhcCCCcCCcEEEecchhhhc--cCCCEEEeCHHHHHHHHHhcccccccCCCCHHHHH
Confidence 9999999975 3334 22 2345666665 668999997 45599999999988886542 3346678999999
Q ss_pred HHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeec-cceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcC
Q 011777 360 GGLAVLRVIDK-ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRG-RGLMVGMELVTDRKEKTPAKAETAVLFEKLRELG 437 (477)
Q Consensus 360 aa~a~l~~l~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~G 437 (477)
++.++|+.++. +++.++++++++++++.|+++ .+... ..+ .|.++++.+. ......++.+.|+++|
T Consensus 303 a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~--~~~~~~~~~~~~~~--------~~~~~~~l~~~L~~~G 370 (427)
T 2w8t_A 303 TATTSIRKLMTAHEKRERLWSNARALHGGLKAM--GFRLG--TETCDSAIVAVMLE--------DQEQAAMMWQALLDGG 370 (427)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH--TCEES--CSSCCSSEEEEEES--------SHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc--CCccc--CCCCCCCEEEEEEC--------CHHHHHHHHHHHHHCC
Confidence 99999998865 678899999999999999886 22211 133 6788888872 2334677899999999
Q ss_pred ceeeccCCC-----CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 438 VLVGKGGLH-----GNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 438 v~v~~~~~~-----~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
|++.++..+ .+++||+++..++++|+++++++|++++++
T Consensus 371 i~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~ 414 (427)
T 2w8t_A 371 LYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRA 414 (427)
T ss_dssp EECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred eEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 999886432 368999999999999999999999998764
No 42
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=1.8e-35 Score=298.75 Aligned_cols=350 Identities=16% Similarity=0.157 Sum_probs=259.8
Q ss_pred ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCC-CCCHHHHHHHHHHHhhcccccc-----ccCChHHHHHHHHHHh
Q 011777 76 YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCG-HCHPDVLNAIFEQSKLLQHATT-----IYLHHAIADFAEALAS 149 (477)
Q Consensus 76 ~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lG-h~~p~v~~Av~~~l~~~~~~~~-----~~~~~~~~~l~~~La~ 149 (477)
++.|..+++++|.|++| ||++||||.++ +++| |++|++.+++.+++.+..+... .+..+...++++++++
T Consensus 24 ~~~~~~~~~~~g~~v~~-~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~ 99 (399)
T 3tqx_A 24 YKSERIITSPQNAEIKV-GEKEVLNFCAN---NYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISE 99 (399)
T ss_dssp CCCCCCBCSCSSSEEEE-TTEEEEECSSC---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHH
T ss_pred ccccccccCCCCceEee-CCeeEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHH
Confidence 34567888999999999 99999999988 4688 7999999999999987433211 1245668899999999
Q ss_pred hCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCC
Q 011777 150 KMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSF 229 (477)
Q Consensus 150 ~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (477)
+++. +..++++||++|++.+++... .+++.|++..++|++. .......+ ...+.+|.
T Consensus 100 ~~~~--~~~i~~~sGt~a~~~~l~~~~--~~gd~v~~~~~~~~~~-~~~~~~~g------------~~~~~~~~------ 156 (399)
T 3tqx_A 100 FLGT--DDTILYSSCFDANGGLFETLL--GPEDAIISDELNHASI-IDGIRLCK------------AQRYRYKN------ 156 (399)
T ss_dssp HHTC--SEEEEESCHHHHHHTTHHHHC--CTTCEEEEETTCCHHH-HHHHHSCC------------SEEEEECT------
T ss_pred HHCC--CcEEEECchHHHHHHHHHHhc--CCCCEEEECCcccHHH-HHHHHHcC------------CceeEeCC------
Confidence 9865 456777889999999987653 2455666665555443 33322222 22222221
Q ss_pred CCCHHHHHHHHHHHHhccCC--CCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc-Cc-cCCCCCCc
Q 011777 230 GSDAARYAQDLQDHIDFGTS--GKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT-GF-GRTGSHYW 305 (477)
Q Consensus 230 ~~~~~~~~~~le~~i~~~~~--~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-gf-gr~G~~~~ 305 (477)
. | .++++++++.... .++++|+++++++++|.+.+ +++|.++|++||+++|+||+|. |+ +..+ . .
T Consensus 157 ~-d----~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~-~-~ 225 (399)
T 3tqx_A 157 N-A----MGDLEAKLKEADEKGARFKLIATDGVFSMDGIIAD----LKSICDLADKYNALVMVDDSHAVGFIGENG-R-G 225 (399)
T ss_dssp T-C----TTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTS-C-C
T ss_pred C-C----HHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCC-C-c
Confidence 0 1 2567777763211 27899999999999998776 9999999999999999999994 54 4444 2 2
Q ss_pred cccccCC--Cccee--eecccccCccceEEEEeCHHHHHhhccccc--ccCCCCcHHHHHHHHHHHHhh-c-hhhHHHHH
Q 011777 306 GFETQGV--IPDIV--TMAKGIGNGLPLGAVVTTPEIANVMAQKIQ--FNTFGGNPVCSAGGLAVLRVI-D-KERRQAHC 377 (477)
Q Consensus 306 ~~~~~gv--~pDiv--t~sK~lg~G~pig~v~~~~~~~~~~~~~~~--~~t~~~~~~~~aaa~a~l~~l-~-~~~~~~~~ 377 (477)
..+.+++ .+|++ ++||+++ |++.|++++++++++.+..... ..+.+.+++.++++.++++.+ + .++..+++
T Consensus 226 ~~~~~~~~~~~di~~~s~sK~~~-g~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 304 (399)
T 3tqx_A 226 TPEYCGVADRVDILTGTLGKALG-GASGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQL 304 (399)
T ss_dssp HHHHHTCTTCCSEEEEESSSSSC-SSCCEEEEECHHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred hHHhhCCCCCCcEEEecchHhcc-cCceEEEEcCHHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 3455665 67888 7999999 6778999999999988865422 234467899999999999877 3 25678888
Q ss_pred HHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC-----CCCEEEE
Q 011777 378 ADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL-----HGNVFRI 452 (477)
Q Consensus 378 ~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-----~~~~iRi 452 (477)
+++.+++.+.|+++ ... .+++.|.++++.+. ......++.+.|+++||++.++.. ..+++||
T Consensus 305 ~~~~~~l~~~L~~~--g~~---~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~iRi 371 (399)
T 3tqx_A 305 QENSRYFRAGMEKL--GFQ---LVPGNHPIIPVMLG--------DAQLATNMADHLLQEGIYVVGFSYPVVPMGKARIRV 371 (399)
T ss_dssp HHHHHHHHHHHHHH--TCC---BCCCSSSEEEEEEE--------CHHHHHHHHHHHHHTTEECCEECTTTSCTTCEEEEE
T ss_pred HHHHHHHHHHHHHc--CCC---cCCCCCCEEEEEeC--------CHHHHHHHHHHHHHCCCEEeeeCCCCCCCCCceEEE
Confidence 88999999988876 222 23667888888873 233467889999999999986532 2368999
Q ss_pred eCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777 453 KPPMCFTKDDADFLVDALDYSMSKL 477 (477)
Q Consensus 453 ~p~~~~t~e~i~~~l~~l~~~l~~l 477 (477)
+++..++++++++++++|+++++++
T Consensus 372 ~~~~~~~~~~i~~~~~~l~~~~~~~ 396 (399)
T 3tqx_A 372 QMSAVHTQQQLDRAIEAFGQVGKKL 396 (399)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred EeecCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998753
No 43
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=100.00 E-value=4.2e-36 Score=302.61 Aligned_cols=360 Identities=11% Similarity=0.033 Sum_probs=256.8
Q ss_pred eeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCC--CCCCE
Q 011777 80 LNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMP--GNLKV 157 (477)
Q Consensus 80 ~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~--~~~~~ 157 (477)
++..+|+|+++||.+|++||||..+.. .+ +.+|+|.+++.+++.+..+.......+.+.++++++++.++ .+.++
T Consensus 11 ~~~~~~~g~~~~d~~g~~~i~~~~~~~--~~-~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~ 87 (391)
T 3dzz_A 11 HVPKRQGNSIKWGVLKEKELPMWIAEM--DF-KIAPEIMASMEEKLKVAAFGYESVPAEYYKAVADWEEIEHRARPKEDW 87 (391)
T ss_dssp SCCCCCTTBTTTTTCCTTCEECCSSCC--SS-CCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHSCCCCGGG
T ss_pred hhccCCCCccceeccCCCceeccccCC--CC-CCCHHHHHHHHHHHhcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCHHH
Confidence 666789999999999999999997742 33 48999999999998864332222244567788888887754 45678
Q ss_pred EEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCc-CCCCCCCHHHH
Q 011777 158 VYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPY-HGSFGSDAARY 236 (477)
Q Consensus 158 v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 236 (477)
|+|++||++|++.+++.+. .+++.|++..++||+........+ ...+.+|... ...+..|
T Consensus 88 i~~~~g~~~a~~~~~~~l~--~~gd~vl~~~~~~~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~~d---- 148 (391)
T 3dzz_A 88 CVFASGVVPAISAMVRQFT--SPGDQILVQEPVYNMFYSVIEGNG-------------RRVISSDLIYENSKYSVN---- 148 (391)
T ss_dssp EEEESCHHHHHHHHHHHHS--CTTCEEEECSSCCHHHHHHHHHTT-------------CEEEECCCEEETTEEECC----
T ss_pred EEECCCHHHHHHHHHHHhC--CCCCeEEECCCCcHHHHHHHHHcC-------------CEEEEeeeeecCCceeec----
Confidence 9999999999999999763 366889999999998766544332 2222222210 1111112
Q ss_pred HHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCC-Ccc
Q 011777 237 AQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGV-IPD 315 (477)
Q Consensus 237 ~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv-~pD 315 (477)
+++++++++ ..++++|+++..++++|. .++++.+++|.++|++||+++|+||+|++|.+.|..+..+...+. .+|
T Consensus 149 ~~~l~~~l~---~~~~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d 224 (391)
T 3dzz_A 149 WADLEEKLA---TPSVRMMVFCNPHNPIGY-AWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKN 224 (391)
T ss_dssp HHHHHHHHT---STTEEEEEEESSBTTTTB-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGG
T ss_pred HHHHHHHHh---ccCceEEEEECCCCCCCc-ccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccC
Confidence 588888886 246778877777888885 557788999999999999999999999999887733444443332 267
Q ss_pred ----eeeeccccc-CccceEEEEeC-HHHHHhhcccc-cccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHH
Q 011777 316 ----IVTMAKGIG-NGLPLGAVVTT-PEIANVMAQKI-QFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLG 386 (477)
Q Consensus 316 ----ivt~sK~lg-~G~pig~v~~~-~~~~~~~~~~~-~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~ 386 (477)
+.++||.+| +|+|+|+++++ +++++.+.... ..++++.|+++++++.++++..++ ++..++++++.+++.+
T Consensus 225 ~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 304 (391)
T 3dzz_A 225 WVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYARE 304 (391)
T ss_dssp GEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEeChhhccccchhheEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 557899998 79999999997 88988876543 245678899999999999876321 3445555555666666
Q ss_pred HHHHHHHhCCCceeeecc-ceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC----CCEEEEeCCCCCcH
Q 011777 387 RLRTLQERHDIIGDVRGR-GLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH----GNVFRIKPPMCFTK 460 (477)
Q Consensus 387 ~L~~l~~~~~~~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~ 460 (477)
.|++. .+.+....+. +.++++++.... ....++.+.|+ ++||.+.++..+ .+++||+++ +++
T Consensus 305 ~l~~~---~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~ 372 (391)
T 3dzz_A 305 FLAKE---VPEVKVLDSNASYLAWVDISALG-------MNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLA--CPK 372 (391)
T ss_dssp HHHHH---CTTSEECCCCBSSEEEEECGGGC-------SCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECC--SCH
T ss_pred HHHhh---CCCcEEeccCceEEEEEehhhcC-------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec--CCH
Confidence 55542 3333333444 444556663210 12457888885 899999987433 378999876 689
Q ss_pred HHHHHHHHHHHHHHhhC
Q 011777 461 DDADFLVDALDYSMSKL 477 (477)
Q Consensus 461 e~i~~~l~~l~~~l~~l 477 (477)
+++++++++|+++++++
T Consensus 373 ~~i~~~l~~l~~~l~~~ 389 (391)
T 3dzz_A 373 ELVIDGMQRLKQGVLNL 389 (391)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998753
No 44
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=100.00 E-value=5.2e-35 Score=295.95 Aligned_cols=351 Identities=15% Similarity=0.162 Sum_probs=258.1
Q ss_pred ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCC-CCHHHHHHHHHHHhhccccc--ccc---CChHHHHHHHHHHh
Q 011777 76 YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGH-CHPDVLNAIFEQSKLLQHAT--TIY---LHHAIADFAEALAS 149 (477)
Q Consensus 76 ~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~Av~~~l~~~~~~~--~~~---~~~~~~~l~~~La~ 149 (477)
++.|..+.+++|+|+||.||+.||||.++ +++|| ++|++.+++.++++...+.. ..| ..+...+++++|++
T Consensus 25 ~~~~~~~~~~~g~~~~~~~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~ 101 (401)
T 1fc4_A 25 FKEERIITSAQQADITVADGSHVINFCAN---NYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAA 101 (401)
T ss_dssp CCCCCCBCSCSSSEEEBTTSCEEEECCCS---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHH
T ss_pred eeeeeeeccCCCceEEeeCCccEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHH
Confidence 45678889999999999999999999988 35897 89999999999987643211 122 25678899999999
Q ss_pred hCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCC
Q 011777 150 KMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSF 229 (477)
Q Consensus 150 ~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (477)
+++.+ ..+++++|++|++.+++.+. .+++.|++.. .+|+......... |...+.++.
T Consensus 102 ~~g~~--~~i~~~sGs~a~~~~~~~~~--~~gd~v~~~~-~~~~~~~~~~~~~------------g~~~~~~~~------ 158 (401)
T 1fc4_A 102 FLGME--DAILYSSCFDANGGLFETLL--GAEDAIISDA-LNHASIIDGVRLC------------KAKRYRYAN------ 158 (401)
T ss_dssp HHTCS--EEEEESCHHHHHHTTHHHHC--CTTCEEEEET-TCCHHHHHHHHTS------------CSEEEEECT------
T ss_pred HhCCC--cEEEeCChHHHHHHHHHHHc--CCCCEEEEcc-hhHHHHHHHHHHc------------CCceEEECC------
Confidence 98654 56678889999999888653 2344555544 4554433322221 223333221
Q ss_pred CCCHHHHHHHHHHHHhccCC--CCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc-Ccc-CCCCCCc
Q 011777 230 GSDAARYAQDLQDHIDFGTS--GKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT-GFG-RTGSHYW 305 (477)
Q Consensus 230 ~~~~~~~~~~le~~i~~~~~--~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-gfg-r~G~~~~ 305 (477)
. | .++++++++.... .++++|+++++++++|.+.+ +++|.++|++||+++|+||+|. |+. ++| ..+
T Consensus 159 ~-d----~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~De~~~~g~~~~~g-~~~ 228 (401)
T 1fc4_A 159 N-D----MQELEARLKEAREAGARHVLIATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFVGENG-RGS 228 (401)
T ss_dssp T-C----HHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTSSTTS-CCH
T ss_pred C-C----HHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCC----HHHHHHHHHHcCCEEEEECcccccccCCCC-Ccc
Confidence 1 1 4778887763211 16789999999999997776 9999999999999999999995 884 556 332
Q ss_pred cccccCCC--ccee--eecccccCccceEEEEeCHHHHHhhcccc--cccCCCCcHHHHHHHHHHHHhhch-hhHHHHHH
Q 011777 306 GFETQGVI--PDIV--TMAKGIGNGLPLGAVVTTPEIANVMAQKI--QFNTFGGNPVCSAGGLAVLRVIDK-ERRQAHCA 378 (477)
Q Consensus 306 ~~~~~gv~--pDiv--t~sK~lg~G~pig~v~~~~~~~~~~~~~~--~~~t~~~~~~~~aaa~a~l~~l~~-~~~~~~~~ 378 (477)
.+..++. .|++ ++||.++++. .|++++++++++.+.... +..+++.|+++++++.++|+.+++ +++.++++
T Consensus 229 -~~~~~~~~~~di~~~s~sK~~~~~~-gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 306 (401)
T 1fc4_A 229 -HEYCDVMGRVDIITGTLGKALGGAS-GGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLW 306 (401)
T ss_dssp -HHHTTCTTCCSEEEEESSSTTCSSS-CEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred -HHHcCCCcCCcEEEecchhhccCCC-CEEEEcCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 2334443 3776 7999996654 499999999988876533 334678899999999999988753 56788888
Q ss_pred HHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC-----CCEEEEe
Q 011777 379 DVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH-----GNVFRIK 453 (477)
Q Consensus 379 ~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-----~~~iRi~ 453 (477)
++.+++.+.|+++ .... .++.|.++++++. ......++.+.|.++||++.++..+ .+++||+
T Consensus 307 ~~~~~l~~~L~~~--g~~~---~~~~~~~~~~~~~--------~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~ 373 (401)
T 1fc4_A 307 ANARQFREQMSAA--GFTL---AGADHAIIPVMLG--------DAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQ 373 (401)
T ss_dssp HHHHHHHHHHHHT--TCCB---CCSSSSEEEEEEE--------CHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEE
T ss_pred HHHHHHHHHHHHc--CCcc---cCCCCCEEEEEcC--------ChHHHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEE
Confidence 8899998888775 2222 2467888888873 2234567889999999999886432 3589999
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhhC
Q 011777 454 PPMCFTKDDADFLVDALDYSMSKL 477 (477)
Q Consensus 454 p~~~~t~e~i~~~l~~l~~~l~~l 477 (477)
++..++++++++++++|+++++++
T Consensus 374 ~~~~~~~~~i~~~~~~l~~~~~~~ 397 (401)
T 1fc4_A 374 MSAAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHh
Confidence 998899999999999999998753
No 45
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=100.00 E-value=7e-35 Score=292.82 Aligned_cols=358 Identities=9% Similarity=0.028 Sum_probs=242.1
Q ss_pred ceeEEeeeccEEEeCC-CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCC--CCC
Q 011777 79 PLNIVEGKMQYLFDEN-GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMP--GNL 155 (477)
Q Consensus 79 p~~~~~g~G~~~~d~d-G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~--~~~ 155 (477)
+++..+++|+++||.+ |+.+|||..|. +.+ +.+|+|.+++.+++.+..+.......+.+.++++.+++.++ .+.
T Consensus 6 ~~~~~~~~g~~~~d~~~~~~~i~l~~~~--~~~-~~~~~v~~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~~g~~~~~ 82 (383)
T 3kax_A 6 KTVNRRGTHSIKWDTYKNEELIHAWIAD--MDF-EVPQPIQTALKKRIEHPIFGYTLPPENIGDIICNWTKKQYNWDIQK 82 (383)
T ss_dssp -------------CCCSSSCCEECCCSS--CSS-CCCHHHHHHHHHHHHSCCCCCCCCCTTHHHHHHHHHHHHHCCCCCG
T ss_pred ceeeccCCCceeeeccCCCCeeeccccc--CCC-CCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCh
Confidence 3566789999999955 58999999875 344 47999999999999864332222356778899999998865 456
Q ss_pred CEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCC-CCCCHH
Q 011777 156 KVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGS-FGSDAA 234 (477)
Q Consensus 156 ~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 234 (477)
++|++++||++|++.+++.+. .+++.|++..++||+........+ ...+.+|...... +..|
T Consensus 83 ~~v~~~~g~~~a~~~~~~~l~--~~gd~vl~~~~~~~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~~d-- 145 (383)
T 3kax_A 83 EWIVFSAGIVPALSTSIQAFT--KENESVLVQPPIYPPFFEMVTTNN-------------RQLCVSPLQKQNDTYAID-- 145 (383)
T ss_dssp GGEEEESCHHHHHHHHHHHHC--CTTCEEEECSSCCHHHHHHHHHTT-------------CEEEECCCEEETTEEECC--
T ss_pred hhEEEcCCHHHHHHHHHHHhC--CCCCEEEEcCCCcHHHHHHHHHcC-------------CEEEeccceecCCcEEEc--
Confidence 789999999999999999763 356889999999998765544332 2222222211111 1111
Q ss_pred HHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccc-----
Q 011777 235 RYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFET----- 309 (477)
Q Consensus 235 ~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~----- 309 (477)
+++++++++ .++++|+++..++++|. ..+.+++++|.++|++||+++|+||+|++|+++|.....+..
T Consensus 146 --~~~l~~~l~----~~~~~v~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~ 218 (383)
T 3kax_A 146 --FEHLEKQFQ----QGVKLMLLCSPHNPIGR-VWKKEELTKLGSLCTKYNVIVVADEIHSDIIYADHTHTPFASLSEEL 218 (383)
T ss_dssp --HHHHHHHHT----TTCCEEEEESSBTTTTB-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHH
T ss_pred --HHHHHHHhC----cCCeEEEEeCCCCCCCc-CcCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCceeHhhcCccc
Confidence 578888884 45667777767788885 557888999999999999999999999999887732222211
Q ss_pred cCCCcceeeeccccc-CccceEEEEe-CHHHHHhhccccc-ccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHH
Q 011777 310 QGVIPDIVTMAKGIG-NGLPLGAVVT-TPEIANVMAQKIQ-FNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHL 384 (477)
Q Consensus 310 ~gv~pDivt~sK~lg-~G~pig~v~~-~~~~~~~~~~~~~-~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l 384 (477)
.+..+++.++||.++ +|+|+|++++ ++++++.+..... .++++.|+++++++.++++..++ ++..++++++.+++
T Consensus 219 ~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l 298 (383)
T 3kax_A 219 AARTITCMAPSKTFNIAGLQASIIIIPNEKLRQAFTSIQYRQGFHGLNIFAYTAMQSAYTECNDWLNEIRFYIEDNAKFA 298 (383)
T ss_dssp HTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred cCcEEEEEEChhhccCcchhheEEEeCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 245566778999999 7999999998 6888888765533 34558899999999998875321 23444555555555
Q ss_pred HHHHHHHHHhCCCceeeecccee-EEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC----CCEEEEeCCCCC
Q 011777 385 LGRLRTLQERHDIIGDVRGRGLM-VGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH----GNVFRIKPPMCF 458 (477)
Q Consensus 385 ~~~L~~l~~~~~~~~~v~g~g~~-~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~ 458 (477)
.+.|++. .+.+...++.+.+ .++++.... ....++.+.|+ ++||++.++..+ .+++||+++ .
T Consensus 299 ~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~--~ 366 (383)
T 3kax_A 299 CEYIKDH---IPTLSVMKPEGSFLLWIDCSALN-------LSQDERTKLLEEKGKIIVEPGEKYGLGGEEHIGINIG--C 366 (383)
T ss_dssp HHHHHHH---CTTCEECCCSBSSEEEEECGGGC-------CCHHHHHHHHHHTSCEECEESGGGCTTCTTEEEEECS--S
T ss_pred HHHHHhh---CCCceEecCCceEEEEEEccccC-------CCHHHHHHHHHhhCCEEeECchhhcCCCCCeEEEEEc--C
Confidence 5555442 3434444555544 456663210 12457888887 689999986432 478999866 5
Q ss_pred cHHHHHHHHHHHHHHHh
Q 011777 459 TKDDADFLVDALDYSMS 475 (477)
Q Consensus 459 t~e~i~~~l~~l~~~l~ 475 (477)
+++++++++++|+++++
T Consensus 367 ~~~~i~~~l~~l~~~l~ 383 (383)
T 3kax_A 367 PRSVLEEILNRLRHTFS 383 (383)
T ss_dssp CHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHhC
Confidence 89999999999998863
No 46
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=100.00 E-value=9.8e-36 Score=298.54 Aligned_cols=353 Identities=13% Similarity=0.062 Sum_probs=247.7
Q ss_pred eeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccc-ccccCChHHHHHHHHHHhhCC--CCCC
Q 011777 80 LNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA-TTIYLHHAIADFAEALASKMP--GNLK 156 (477)
Q Consensus 80 ~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~-~~~~~~~~~~~l~~~La~~~~--~~~~ 156 (477)
+...+|+|+++||.||++||||.+|. +.++ .+|+|.+++.+++....+. ...+ .+.+..+++.+.+..+ .+.+
T Consensus 7 ~~~~~~~g~~~~d~~g~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~-~~lr~~la~~~~~~~~~~~~~~ 82 (377)
T 3fdb_A 7 IEDLRARNTMKWTRYGQGVLPLWVAE--SDFS-TCPAVLQAITDAVQREAFGYQPDG-SLLSQATAEFYADRYGYQARPE 82 (377)
T ss_dssp HHHHHHTCCHHHHSSCTTSEECCSSC--CCSC-CCHHHHHHHHHHHHTTCCSSCCSS-CCHHHHHHHHHHHHHCCCCCGG
T ss_pred HHHhcCCCCceeeccCCCeeeecccC--CCCC-CCHHHHHHHHHHHHcCCCCCCCCC-HHHHHHHHHHHHHHhCCCCCHH
Confidence 33458999999999999999998875 3454 7999999999999863221 1122 5566667776665433 4567
Q ss_pred EEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHH
Q 011777 157 VVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARY 236 (477)
Q Consensus 157 ~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (477)
+|++++||++|++.+++... .+++.|++..++||++.......+. .+..++.... .+
T Consensus 83 ~i~~t~g~~~a~~~~~~~~~--~~gd~vl~~~~~~~~~~~~~~~~g~-----------~~~~~~~~~~----~d------ 139 (377)
T 3fdb_A 83 WIFPIPDVVRGLYIAIDHFT--PAQSKVIVPTPAYPPFFHLLSATQR-----------EGIFIDATGG----IN------ 139 (377)
T ss_dssp GEEEESCHHHHHHHHHHHHS--CTTCCEEEEESCCTHHHHHHHHHTC-----------CEEEEECTTS----CC------
T ss_pred HEEEeCChHHHHHHHHHHhc--CCCCEEEEcCCCcHhHHHHHHHcCC-----------EEEEccCCCC----CC------
Confidence 89999999999999998763 3567899999999987655444322 1222222111 22
Q ss_pred HHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCC-CCCccc---cccCC
Q 011777 237 AQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTG-SHYWGF---ETQGV 312 (477)
Q Consensus 237 ~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G-~~~~~~---~~~gv 312 (477)
+++++++++. ++++++++..+|++|. .++.+.+++|.++|++||+++|+||+|++|+++| .....+ +..+.
T Consensus 140 ~~~l~~~l~~----~~~~v~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~ 214 (377)
T 3fdb_A 140 LHDVEKGFQA----GARSILLCNPYNPLGM-VFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASV 214 (377)
T ss_dssp HHHHHHHHHT----TCCEEEEESSBTTTTB-CCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHH
T ss_pred HHHHHHHhcc----CCCEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCc
Confidence 5888888872 2444444444777775 5577889999999999999999999999998776 322222 22334
Q ss_pred Ccceeeeccccc-CccceEEEEe-CHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHH
Q 011777 313 IPDIVTMAKGIG-NGLPLGAVVT-TPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRL 388 (477)
Q Consensus 313 ~pDivt~sK~lg-~G~pig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L 388 (477)
.+++.++||.+| +|+|+||+++ ++++++.+....+..+++.|+++++++.++|+..++ ++..++++++.+++.+.|
T Consensus 215 ~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L 294 (377)
T 3fdb_A 215 CITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEI 294 (377)
T ss_dssp EEEEECSTTTTTCGGGCCEEEECCSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeChHhccCcchhheEEEeCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778999997 6899998876 788988887766667889999999999999985422 334555555666666655
Q ss_pred HHHHHhCCCceeeecccee-EEEEEeeCCCCCCccHHHHHHHHHHHHHc-CceeeccCCC----CCEEEEeCCCCCcHHH
Q 011777 389 RTLQERHDIIGDVRGRGLM-VGMELVTDRKEKTPAKAETAVLFEKLREL-GVLVGKGGLH----GNVFRIKPPMCFTKDD 462 (477)
Q Consensus 389 ~~l~~~~~~~~~v~g~g~~-~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~----~~~iRi~p~~~~t~e~ 462 (477)
++. .+.+....+.+.+ +++++..... ..++.+.|+++ ||++.++..+ .+++||+++ .++++
T Consensus 295 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~--~~~e~ 361 (377)
T 3fdb_A 295 PKR---IPGAKITPMQATYLMWIDFRDTTI--------EGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFA--TSREV 361 (377)
T ss_dssp HHH---STTCEECCCSBCSEEEEECTTSCC--------CSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECC--SCHHH
T ss_pred Hhh---CCCceEecCCeeEEEEEECcccCC--------CHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeC--CCHHH
Confidence 542 3334444445444 4676632111 02355666665 9999987533 479999876 48999
Q ss_pred HHHHHHHHHHHHhhC
Q 011777 463 ADFLVDALDYSMSKL 477 (477)
Q Consensus 463 i~~~l~~l~~~l~~l 477 (477)
+++++++|+++++++
T Consensus 362 i~~~l~~l~~~l~~~ 376 (377)
T 3fdb_A 362 LEEAIDRMAKAVSHH 376 (377)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999998753
No 47
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=100.00 E-value=4.6e-34 Score=288.01 Aligned_cols=359 Identities=10% Similarity=0.002 Sum_probs=229.5
Q ss_pred eEEeeeccEEEeCCCC-----EEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCCh-HHHHHHHHHHhhCC--
Q 011777 81 NIVEGKMQYLFDENGR-----RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHH-AIADFAEALASKMP-- 152 (477)
Q Consensus 81 ~~~~g~G~~~~d~dG~-----~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~-~~~~l~~~La~~~~-- 152 (477)
+-.+|+|+++||.+|+ +||||..+.. .+| .+|+|.+++.++++...........+ .+.++++.+.+..+
T Consensus 8 ~~~~~~~~~~~d~~~~~~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~~lr~~la~~l~~~~g~~ 84 (390)
T 1d2f_A 8 VDRHGTWCTQWDYVADRFGTADLLPFTISDM--DFA-TAPCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTA 84 (390)
T ss_dssp ----------------------CEECCSSSC--SSC-CCHHHHHHHHHHHTTCCCCCCCSCCHHHHHHHHHHHHHHSCCC
T ss_pred ccccCCCccchhhhccccCCCCeeEeeecCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHHHHhcCCC
Confidence 3468999999999998 7899976653 577 78999999999987532111111345 66677777766554
Q ss_pred CCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcC-CCCCC
Q 011777 153 GNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYH-GSFGS 231 (477)
Q Consensus 153 ~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 231 (477)
.+.++|++++||++|++.+++.+. .++++|++..++||++.......+. ..+.+|.... ..|..
T Consensus 85 ~~~~~v~~t~g~~~al~~~~~~l~--~~gd~vl~~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~~ 149 (390)
T 1d2f_A 85 IDSQTVVYGPSVIYMVSELIRQWS--ETGEGVVIHTPAYDAFYKAIEGNQR-------------TVMPVALEKQADGWFC 149 (390)
T ss_dssp CCGGGEEEESCHHHHHHHHHHHSS--CTTCEEEEEESCCHHHHHHHHHTTC-------------EEEEEECEECSSSEEC
T ss_pred CCHHHEEEcCCHHHHHHHHHHHhc--CCCCEEEEcCCCcHHHHHHHHHCCC-------------EEEEeecccCCCcccc
Confidence 456789999999999999999653 2457899999999998665443221 1111111110 01111
Q ss_pred CHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccC
Q 011777 232 DAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQG 311 (477)
Q Consensus 232 ~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~g 311 (477)
| +++|+++++ ..++++|++...++++|.+ ++.+++++|.++|++||+++|+||+|++|.++|..+..+...+
T Consensus 150 d----~~~l~~~l~---~~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~ 221 (390)
T 1d2f_A 150 D----MGKLEAVLA---KPECKIMLLCSPQNPTGKV-WTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVA 221 (390)
T ss_dssp C----HHHHHHHHT---STTEEEEEEESSCTTTCCC-CCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTC
T ss_pred C----HHHHHHHhc---cCCCeEEEEeCCCCCCCcC-cCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcc
Confidence 2 578888886 2356777765557777754 5778999999999999999999999999988763222222111
Q ss_pred CC-cc-eeeeccccc-CccceEEEEeC-HHHHHhhccccc-ccCC-CCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 011777 312 VI-PD-IVTMAKGIG-NGLPLGAVVTT-PEIANVMAQKIQ-FNTF-GGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLL 385 (477)
Q Consensus 312 v~-pD-ivt~sK~lg-~G~pig~v~~~-~~~~~~~~~~~~-~~t~-~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~ 385 (477)
.. +| +.++||.++ +|+|+|+++++ +++++.+..... ..++ +.|+++++++.++++.. +++.++.++..+..+
T Consensus 222 ~~~~d~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~ 299 (390)
T 1d2f_A 222 RGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQG--APWLDALRIYLKDNL 299 (390)
T ss_dssp CSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHH
T ss_pred hhhHhhccCccHhhcccChhheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHH
Confidence 11 13 788999999 79999999985 788887765544 4565 77999999999998753 233444444434444
Q ss_pred HHHHHHHHh-CCCceeeeccc-eeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC----CCEEEEeCCCCC
Q 011777 386 GRLRTLQER-HDIIGDVRGRG-LMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH----GNVFRIKPPMCF 458 (477)
Q Consensus 386 ~~L~~l~~~-~~~~~~v~g~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~ 458 (477)
+.+.+...+ ++.+..+++.| +++++++.... ....++.+.|. ++||++.++..+ .+++||+++.
T Consensus 300 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~-- 370 (390)
T 1d2f_A 300 TYIADKMNAAFPELNWQIPQSTYLAWLDLRPLN-------IDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC-- 370 (390)
T ss_dssp HHHHHHHHHHCSSCCCCCCSBCSEEEEECGGGC-------CCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS--
T ss_pred HHHHHHHHhhCCCCEEecCCccEEEEEEccccC-------CCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC--
Confidence 444333333 34344445555 44567763210 01456888888 689999987533 4799998775
Q ss_pred cHHHHHHHHHHHHHHHhh
Q 011777 459 TKDDADFLVDALDYSMSK 476 (477)
Q Consensus 459 t~e~i~~~l~~l~~~l~~ 476 (477)
+++++++++++|++++++
T Consensus 371 ~~~~l~~~l~~l~~~l~~ 388 (390)
T 1d2f_A 371 PRSKLEKGVAGLINAIRA 388 (390)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 589999999999998864
No 48
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=100.00 E-value=4.5e-35 Score=295.01 Aligned_cols=356 Identities=12% Similarity=0.043 Sum_probs=250.7
Q ss_pred eeEEeeeccEEEeCCCCEE-----EeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCC--
Q 011777 80 LNIVEGKMQYLFDENGRRY-----LDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMP-- 152 (477)
Q Consensus 80 ~~~~~g~G~~~~d~dG~~y-----lD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~-- 152 (477)
+...+|+|+++||.+|++| |||..+. +..+.+|+|.+++.+++.+..+....+..+.+.++++++++.++
T Consensus 11 ~~~~~~~g~~~~d~~~~~~~~~~~i~l~~~~---~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~~g~~ 87 (391)
T 4dq6_A 11 IVDRSNNFSSKWSEMEKKYGTNDLLPMWVAD---MDFKAAPCIIDSLKNRLEQEIYGYTTRPDSYNESIVNWLYRRHNWK 87 (391)
T ss_dssp CCCCTTTTBHHHHCHHHHHSCSCSEECCSSS---CSSCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHCCC
T ss_pred ccccccCCceeeeecccccCCCCceeccccC---CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 4456889999999987665 9998774 23357899999999999864443333456778899999998876
Q ss_pred CCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCC-c-CCCCC
Q 011777 153 GNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDP-Y-HGSFG 230 (477)
Q Consensus 153 ~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~ 230 (477)
.+.++|++++||++|++.+++.+. .+++.|++..++||+........+ ...+.+|.. + ...+.
T Consensus 88 ~~~~~v~~~~g~~~a~~~~~~~~~--~~gd~vl~~~~~~~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~~ 152 (391)
T 4dq6_A 88 IKSEWLIYSPGVIPAISLLINELT--KANDKIMIQEPVYSPFNSVVKNNN-------------RELIISPLQKLENGNYI 152 (391)
T ss_dssp CCGGGEEEESCHHHHHHHHHHHHS--CTTCEEEECSSCCTHHHHHHHHTT-------------CEEEECCCEECTTSCEE
T ss_pred CcHHHeEEcCChHHHHHHHHHHhC--CCCCEEEEcCCCCHHHHHHHHHcC-------------CeEEeeeeeecCCCceE
Confidence 556789999999999999999763 356789999999998766544332 222222221 0 01111
Q ss_pred CCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccccc
Q 011777 231 SDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ 310 (477)
Q Consensus 231 ~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~ 310 (477)
.| +++++++++ + +++|+++..++++|. .++++.+++|.++|++||+++|+||+|++|.++|.....+...
T Consensus 153 ~d----~~~l~~~l~----~-~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~ 222 (391)
T 4dq6_A 153 MD----YEDIENKIK----D-VKLFILCNPHNPVGR-VWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASI 222 (391)
T ss_dssp CC----HHHHHHHCT----T-EEEEEEESSBTTTTB-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGS
T ss_pred ee----HHHHHHHhh----c-CCEEEEECCCCCCCc-CcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHc
Confidence 12 578888876 2 777777777888885 5577889999999999999999999999998877322222222
Q ss_pred -----CCCcceeeeccccc-CccceEEEEeCH-HHHHhhcccc-cccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHH
Q 011777 311 -----GVIPDIVTMAKGIG-NGLPLGAVVTTP-EIANVMAQKI-QFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADV 380 (477)
Q Consensus 311 -----gv~pDivt~sK~lg-~G~pig~v~~~~-~~~~~~~~~~-~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~ 380 (477)
+....+.++||.++ +|+|+|++++++ ++++.+.... +.++++.|+++++++.++++..++ ++..++++++
T Consensus 223 ~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 302 (391)
T 4dq6_A 223 SKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNGESWLESFLEYLESN 302 (391)
T ss_dssp CHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CccccCcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 22344668999998 689999999985 8888776543 345668899999999999885321 2333444444
Q ss_pred HHHHHHHHHHHHHhCCCceeeeccceeE-EEEEeeCCCCCCccHHHHHHHHHHHHHc-CceeeccCCC----CCEEEEeC
Q 011777 381 GSHLLGRLRTLQERHDIIGDVRGRGLMV-GMELVTDRKEKTPAKAETAVLFEKLREL-GVLVGKGGLH----GNVFRIKP 454 (477)
Q Consensus 381 ~~~l~~~L~~l~~~~~~~~~v~g~g~~~-~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~----~~~iRi~p 454 (477)
.+++.+.|++. .+.+...++.+.++ ++++.... ....++.+.|+++ ||++.++..+ .+++||++
T Consensus 303 ~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~ 372 (391)
T 4dq6_A 303 IDFAIKYINEN---MPKLKVRKPEGTYLLWVDFSALG-------LSDEELESILVQKGKVALNQGNSFGIGGSGYQRINL 372 (391)
T ss_dssp HHHHHHHHHHH---CTTSEECCCSBSSEEEEECGGGC-------CCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEEC
T ss_pred HHHHHHHHHhh---CCCCEecCCCccEEEEEEhhhcC-------CCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEE
Confidence 45554444432 34444455555544 56663210 1245788889988 9999886432 37899987
Q ss_pred CCCCcHHHHHHHHHHHHHHHh
Q 011777 455 PMCFTKDDADFLVDALDYSMS 475 (477)
Q Consensus 455 ~~~~t~e~i~~~l~~l~~~l~ 475 (477)
+ ++++++++++++|+++++
T Consensus 373 ~--~~~~~i~~~l~~l~~~l~ 391 (391)
T 4dq6_A 373 A--CPRSMLEEALIRIKNAIN 391 (391)
T ss_dssp C--SCHHHHHHHHHHHHHHHC
T ss_pred c--CCHHHHHHHHHHHHHHhC
Confidence 6 689999999999998873
No 49
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=100.00 E-value=1e-34 Score=293.65 Aligned_cols=359 Identities=10% Similarity=0.002 Sum_probs=243.2
Q ss_pred eEEeeeccEEEeCCCC-------EEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCC-
Q 011777 81 NIVEGKMQYLFDENGR-------RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMP- 152 (477)
Q Consensus 81 ~~~~g~G~~~~d~dG~-------~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~- 152 (477)
+..+|+|+++||.||+ .++||..+. +.++ .+|+|.+++.++++...........+.+..+++.+.+.++
T Consensus 9 ~~~~~~g~~~~d~~g~~~g~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~ 85 (399)
T 1c7n_A 9 ISRKNLGSLKWDLMYSQNPEVGNEVVPLSVAD--MEFK-NPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQW 85 (399)
T ss_dssp CCCTTTTBHHHHHHHHHCTTCCTTCCCCCSSS--CSSC-CCHHHHHHHHHHHHHCCCSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred ccccCCCccccccchhhccccCCCceeeeecC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHhCC
Confidence 3457999999999884 789997765 3455 6899999999998753211111123344555555554444
Q ss_pred -CCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcC-CCCC
Q 011777 153 -GNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYH-GSFG 230 (477)
Q Consensus 153 -~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 230 (477)
.+.++|++++||++|++.+++... .++++|++..++||++...+...+ ...+.+|.... +.+.
T Consensus 86 ~~~~~~v~~t~g~~~a~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~g-------------~~~~~~~~~~~~g~~~ 150 (399)
T 1c7n_A 86 DIQTDWIINTAGVVPAVFNAVREFT--KPGDGVIIITPVYYPFFMAIKNQE-------------RKIIECELLEKDGYYT 150 (399)
T ss_dssp CCCGGGEEEESSHHHHHHHHHHHHC--CTTCEEEECSSCCTHHHHHHHTTT-------------CEEEECCCEEETTEEE
T ss_pred CCChhhEEEcCCHHHHHHHHHHHhc--CCCCEEEEcCCCcHhHHHHHHHcC-------------CEEEecccccCCCCEE
Confidence 456789999999999999999663 356789999999999866544332 12222221100 0111
Q ss_pred CCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccc-
Q 011777 231 SDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFET- 309 (477)
Q Consensus 231 ~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~- 309 (477)
.| +++|++.++. .++++|+++..++++|. .++++++++|.++|++||+++|+||+|++|+++|..+..+..
T Consensus 151 ~d----~~~l~~~l~~---~~~~~v~~~~~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~ 222 (399)
T 1c7n_A 151 ID----FQKLEKLSKD---KNNKALLFCSPHNPVGR-VWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSI 222 (399)
T ss_dssp CC----HHHHHHHHTC---TTEEEEEEESSBTTTTB-CCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGS
T ss_pred Ec----HHHHHHHhcc---CCCcEEEEcCCCCCCCc-CcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHc
Confidence 11 5788888862 35777777666777785 567889999999999999999999999999877632333322
Q ss_pred ----cCCCcceeeeccccc-CccceEEEEeC-HHHHHhhcccccccCC-CCcHHHHHHHHHHHHhhchhhHHHHHHHHHH
Q 011777 310 ----QGVIPDIVTMAKGIG-NGLPLGAVVTT-PEIANVMAQKIQFNTF-GGNPVCSAGGLAVLRVIDKERRQAHCADVGS 382 (477)
Q Consensus 310 ----~gv~pDivt~sK~lg-~G~pig~v~~~-~~~~~~~~~~~~~~t~-~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~ 382 (477)
.+...++.++||.++ +|+|+|+++++ +++++.+.......++ +.|+++++++.++|+.. +++.++.++..+
T Consensus 223 ~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~ 300 (399)
T 1c7n_A 223 DEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKEC--GKWLDGCIKVID 300 (399)
T ss_dssp CHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC--HHHHHHHHHHHH
T ss_pred CccccCcEEEEEeChhhccccchheEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCC--hHHHHHHHHHHH
Confidence 233445668999999 79999999997 6788887765444444 57999999999998753 334444444444
Q ss_pred HHHHHHHHHHHh-CCCceeeecccee-EEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC----CCEEEEeCC
Q 011777 383 HLLGRLRTLQER-HDIIGDVRGRGLM-VGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH----GNVFRIKPP 455 (477)
Q Consensus 383 ~l~~~L~~l~~~-~~~~~~v~g~g~~-~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~ 455 (477)
..++.+.+...+ ++.+..+++.|.+ +++++.... ....++.+.|+ ++||++.++..+ .+++||+++
T Consensus 301 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~ 373 (399)
T 1c7n_A 301 KNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALK-------MDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLA 373 (399)
T ss_dssp HHHHHHHHHHHHHCTTSBCCCCSBSSEEEEECGGGC-------CCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECC
T ss_pred HHHHHHHHHHHhhCCCCeEecCCceEEEEEEcccCC-------CCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEec
Confidence 444444443333 4434444555554 467763210 01356888887 689999987433 479999877
Q ss_pred CCCcHHHHHHHHHHHHHHHhh
Q 011777 456 MCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 456 ~~~t~e~i~~~l~~l~~~l~~ 476 (477)
. +++++++++++|.+++++
T Consensus 374 ~--~~~~l~~~l~~l~~~l~~ 392 (399)
T 1c7n_A 374 A--PSSVIQESLERLNKALKD 392 (399)
T ss_dssp S--CHHHHHHHHHHHHHHHHH
T ss_pred c--CHHHHHHHHHHHHHHHHH
Confidence 5 489999999999998864
No 50
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=100.00 E-value=2.1e-33 Score=283.95 Aligned_cols=347 Identities=13% Similarity=0.091 Sum_probs=256.3
Q ss_pred ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCC-CCHHHHHHHHHHHhhccccc-----cccCChHHHHHHHHHHh
Q 011777 76 YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGH-CHPDVLNAIFEQSKLLQHAT-----TIYLHHAIADFAEALAS 149 (477)
Q Consensus 76 ~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~Av~~~l~~~~~~~-----~~~~~~~~~~l~~~La~ 149 (477)
++.|+.+.+++|.++| .+|+.||||.+|.+ +|| .+|++.+++.++++...+.. ..+..+...++++++++
T Consensus 24 ~~~~~~~~~~~g~~~~-~~g~~~idl~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~ 99 (398)
T 3a2b_A 24 YAYFRPIQSKQDTEVK-IDGRRVLMFGSNSY---LGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSA 99 (398)
T ss_dssp CCSSCCBCSCSSSEEE-ETTEEEEECSCSCT---TCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHH
T ss_pred ccceeeecCCCCceEE-ECCceEEEeecccc---cCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHH
Confidence 3567889999999999 99999999998854 688 79999999999987643211 12345778999999999
Q ss_pred hCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCC
Q 011777 150 KMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSF 229 (477)
Q Consensus 150 ~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (477)
+++. +++++++||++|++.+++.+. .+++.|++..++|.+. ....... |...+.+|. .
T Consensus 100 ~~g~--~~v~~~~ggt~a~~~~~~~~~--~~gd~V~~~~p~~~~~-~~~~~~~------------g~~~~~v~~-----~ 157 (398)
T 3a2b_A 100 YVGK--EAAILFSTGFQSNLGPLSCLM--GRNDYILLDERDHASI-IDGSRLS------------FSKVIKYGH-----N 157 (398)
T ss_dssp HHTC--SEEEEESSHHHHHHHHHHHSS--CTTCEEEEETTCCHHH-HHHHHHS------------SSEEEEECT-----T
T ss_pred HhCC--CcEEEECCHHHHHHHHHHHHh--CCCCEEEECCccCHHH-HHHHHHc------------CCceEEeCC-----C
Confidence 8854 689999999999999998663 2456677766666544 3332222 222222221 1
Q ss_pred CCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCc--cCCCCCCccc
Q 011777 230 GSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGF--GRTGSHYWGF 307 (477)
Q Consensus 230 ~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gf--gr~G~~~~~~ 307 (477)
| .++++++++....+++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+.+ ++++ ..+ .
T Consensus 158 --d----~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~----~~~l~~~~~~~~~~li~De~~~~~~~~~~~-~~~-~ 225 (398)
T 3a2b_A 158 --N----MEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVN----LPELTSIANEFDAAVMVDDAHSLGVIGHKG-AGT-A 225 (398)
T ss_dssp --C----HHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGG-CCH-H
T ss_pred --C----HHHHHHHHHhhccCCceEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCCcccccCCCC-Cch-H
Confidence 1 478888887322126889999999999997776 999999999999999999999744 3434 222 2
Q ss_pred cccCCC--ccee--eecccccC-ccceEEEEeCHHHHHhhccc--ccccCCCCcHHHHHHHHHHHHhhch-hhHHHHHHH
Q 011777 308 ETQGVI--PDIV--TMAKGIGN-GLPLGAVVTTPEIANVMAQK--IQFNTFGGNPVCSAGGLAVLRVIDK-ERRQAHCAD 379 (477)
Q Consensus 308 ~~~gv~--pDiv--t~sK~lg~-G~pig~v~~~~~~~~~~~~~--~~~~t~~~~~~~~aaa~a~l~~l~~-~~~~~~~~~ 379 (477)
+.+++. +|++ ++||.++. | ||+++++++++.+... .+..+...++..++++.++|+.++. ++..+++++
T Consensus 226 ~~~~~~~~~di~~~s~sK~~~~~G---G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~ 302 (398)
T 3a2b_A 226 SHFGLNDDVDLIMGTFSKSLASLG---GFVAGDADVIDFLKHNARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWK 302 (398)
T ss_dssp HHHTCGGGCSEEEEESSSTTCSSC---EEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHH
T ss_pred hhcCCCcCCeEEEecccccccCCC---cEEEeCHHHHHHHHHhcccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 444543 5777 89999984 5 9999999998887653 2345556677777777788876543 467788888
Q ss_pred HHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC-----CCEEEEeC
Q 011777 380 VGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH-----GNVFRIKP 454 (477)
Q Consensus 380 ~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-----~~~iRi~p 454 (477)
+.+++.+.|+++ .... .++.|.++++.+. ......++.+.|+++||.+.++..+ .+++||++
T Consensus 303 ~~~~l~~~L~~~--g~~~---~~~~g~~~~~~~~--------~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRis~ 369 (398)
T 3a2b_A 303 NTDYAKAQLLDH--GFDL---GATESPILPIFIR--------SNEKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSL 369 (398)
T ss_dssp HHHHHHHHHHHT--TCCB---CSCCSSEEEEECC--------CHHHHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEEC
T ss_pred HHHHHHHHHHhc--CCCc---CCCCCCEEEEEcC--------CHHHHHHHHHHHHHCCcEEEeeCCCCCCCCCceEEEEE
Confidence 888888888775 2222 3456888888762 2334567889999999999987543 47899999
Q ss_pred CCCCcHHHHHHHHHHHHHHHhh
Q 011777 455 PMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 455 ~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
+..++++++++++++|++++++
T Consensus 370 ~~~~~~e~i~~~~~~l~~~l~~ 391 (398)
T 3a2b_A 370 MATHTYDQIDEAIEKMVKVFKQ 391 (398)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHHHH
Confidence 9888999999999999999875
No 51
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=100.00 E-value=7.3e-34 Score=290.28 Aligned_cols=351 Identities=11% Similarity=-0.005 Sum_probs=239.1
Q ss_pred EEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccccc-----CChHHHHHHHHHHhhCC--CCCC-EEEEeCChHHHH
Q 011777 97 RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIY-----LHHAIADFAEALASKMP--GNLK-VVYFVNSGTEAN 168 (477)
Q Consensus 97 ~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~-----~~~~~~~l~~~La~~~~--~~~~-~v~~~~sGseA~ 168 (477)
.+|||..|.. .+| .+|+|.+++.++++........| ..+.++.+++.+.+.++ .+.+ +|+|++||++|+
T Consensus 38 ~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~ 114 (429)
T 1yiz_A 38 KPLNLGQGFP--DYH-APKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEAL 114 (429)
T ss_dssp CCEECCSSSC--SSC-CCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred CEEEecCCCC--CCC-CCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHH
Confidence 5889988765 567 68999999999987621111122 23344555555554434 4567 899999999999
Q ss_pred HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCC--------CCCCCHHHHHHHH
Q 011777 169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHG--------SFGSDAARYAQDL 240 (477)
Q Consensus 169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l 240 (477)
+.+++.+. .+++.|++..++||++.......+ ...+.+|..... .+..| +++|
T Consensus 115 ~~~~~~~~--~~gd~Vl~~~p~y~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~~~d----~~~l 175 (429)
T 1yiz_A 115 YATIQGHV--DEGDEVIIIEPFFDCYEPMVKAAG-------------GIPRFIPLKPNKTGGTISSADWVLD----NNEL 175 (429)
T ss_dssp HHHHHHHC--CTTCEEEEEESCCTTHHHHHHHTT-------------CEEEEEECBCCCSSSSEEGGGCBCC----HHHH
T ss_pred HHHHHHhc--CCCCEEEEcCCCchhHHHHHHHcC-------------CEEEEEeCCcccccccccccCcccC----HHHH
Confidence 99999764 256789999999999765443221 111111111100 11112 5778
Q ss_pred HHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccc----ccCCCcce
Q 011777 241 QDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFE----TQGVIPDI 316 (477)
Q Consensus 241 e~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~----~~gv~pDi 316 (477)
++.++ +++++|+++++++++|.+ ++++++++|.++|++||+++|+||+|++|+++|.....+. ..+..+++
T Consensus 176 ~~~l~----~~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 250 (429)
T 1yiz_A 176 EALFN----EKTKMIIINTPHNPLGKV-MDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITI 250 (429)
T ss_dssp HHHCC----TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEE
T ss_pred HHHhc----cCceEEEECCCCCCCCcc-CCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEE
Confidence 87775 467888888888888855 5788999999999999999999999999987763222222 34456667
Q ss_pred eeeccccc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHh-----hchhhHHHHHHHHHHHHHHHHHH
Q 011777 317 VTMAKGIG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRV-----IDKERRQAHCADVGSHLLGRLRT 390 (477)
Q Consensus 317 vt~sK~lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~-----l~~~~~~~~~~~~~~~l~~~L~~ 390 (477)
.++||.++ +|+|+|++++++++++.+....+..+++.|+++++++.++|+. ...+++.+++++..+..++.|.+
T Consensus 251 ~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (429)
T 1yiz_A 251 GSAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMAS 330 (429)
T ss_dssp EEHHHHHTCGGGCCEEEESCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHH
T ss_pred ecchhccCCCCcceEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 78999999 6999999999999998887666667899999999999999987 43344444444444444444433
Q ss_pred HHHhCCCceeeeccceeEEEEEeeCCCCC----CccHHHHHHHHHHHH-HcCceeeccCCC---------CCEEEEeCCC
Q 011777 391 LQERHDIIGDVRGRGLMVGMELVTDRKEK----TPAKAETAVLFEKLR-ELGVLVGKGGLH---------GNVFRIKPPM 456 (477)
Q Consensus 391 l~~~~~~~~~v~g~g~~~~i~~~~~~~~~----~~~~~~~~~~~~~l~-~~Gv~v~~~~~~---------~~~iRi~p~~ 456 (477)
...+++........|+++++++....... ........++.+.|. ++||++.++..+ .+++||+++
T Consensus 331 ~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~- 409 (429)
T 1yiz_A 331 FLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF- 409 (429)
T ss_dssp HHHHHTCEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECC-
T ss_pred HHHhCCCcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEec-
Confidence 33333433223334778888874321000 000012456777776 789999887432 579999887
Q ss_pred CCcHHHHHHHHHHHHHHHhh
Q 011777 457 CFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 457 ~~t~e~i~~~l~~l~~~l~~ 476 (477)
.++++|++++++|++++++
T Consensus 410 -~~~e~i~~~l~~l~~~l~~ 428 (429)
T 1yiz_A 410 -KKDENLQKAAEILRKWKGS 428 (429)
T ss_dssp -SCHHHHHHHHHHHHHHSCC
T ss_pred -CCHHHHHHHHHHHHHhccC
Confidence 4899999999999998765
No 52
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=100.00 E-value=3.6e-33 Score=278.16 Aligned_cols=343 Identities=16% Similarity=0.100 Sum_probs=235.5
Q ss_pred ceeEEeeeccEEEe-CCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCE
Q 011777 79 PLNIVEGKMQYLFD-ENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKV 157 (477)
Q Consensus 79 p~~~~~g~G~~~~d-~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~ 157 (477)
++.+.+|.+.+.++ .+|+++|||.+|.. +++ .+|+|.+++.++++... .|+++...+++++|+++++.+.++
T Consensus 8 ~~~~~~g~~~~~~~~~~~~~~idl~~~~~--~~~-~~~~v~~a~~~~~~~~~----~y~~~~~~~l~~~la~~~~~~~~~ 80 (361)
T 3ftb_A 8 GDLMIHGGDIYTEGVFKGRELLDYSSNIN--PLG-IPKSFLNNIDEGIKNLG----VYPDVNYRRLNKSIENYLKLKDIG 80 (361)
T ss_dssp --------------------CEETTCCCC--TTC-SCHHHHTTHHHHHHGGG----SCCCTTCHHHHHHHHHHHTCCSCE
T ss_pred CccccCCCCHHHHhhcCCCCEEEecCCCC--CCC-CCHHHHHHHHHHHHHhc----CCCCccHHHHHHHHHHHhCCCcce
Confidence 45566666655555 49999999998864 455 58999999999987632 234555678999999998777789
Q ss_pred EEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHH
Q 011777 158 VYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYA 237 (477)
Q Consensus 158 v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (477)
++||+||++|++.+++.+ ++|++..++||+........+ ...+.+|......++ +
T Consensus 81 i~~~~g~t~al~~~~~~~------d~vi~~~~~~~~~~~~~~~~g-------------~~~~~~~~~~~~~~~------~ 135 (361)
T 3ftb_A 81 IVLGNGASEIIELSISLF------EKILIIVPSYAEYEINAKKHG-------------VSVVFSYLDENMCID------Y 135 (361)
T ss_dssp EEEESSHHHHHHHHHTTC------SEEEEEESCCTHHHHHHHHTT-------------CEEEEEECCTTSCCC------H
T ss_pred EEEcCCHHHHHHHHHHHc------CcEEEecCChHHHHHHHHHcC-------------CeEEEeecCcccCCC------H
Confidence 999999999999999854 789999999998766544332 222222222122233 4
Q ss_pred HHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcc--
Q 011777 238 QDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPD-- 315 (477)
Q Consensus 238 ~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pD-- 315 (477)
+++++.++ + +++|+++..++++|. .++.+.+++|.++|++||+++|+||+|++|.+.+ ........+..++
T Consensus 136 ~~l~~~l~---~--~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~i 208 (361)
T 3ftb_A 136 EDIISKID---D--VDSVIIGNPNNPNGG-LINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDP-SSSFVGEIKNYSCLF 208 (361)
T ss_dssp HHHHHHTT---T--CSEEEEETTBTTTTB-CCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCT-TSSSGGGTTTCSSEE
T ss_pred HHHHHhcc---C--CCEEEEeCCCCCCCC-CCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCc-ccchhHhcccCCCEE
Confidence 77888776 2 455555555667774 5578889999999999999999999999987752 2222333333333
Q ss_pred -eeeeccccc-CccceEEEE-eCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHH
Q 011777 316 -IVTMAKGIG-NGLPLGAVV-TTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQ 392 (477)
Q Consensus 316 -ivt~sK~lg-~G~pig~v~-~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~ 392 (477)
+.++||.++ +|+|+|+++ .++++++.+.... .+++.|+++++++.++|+. ++..++.++..+..++.+.+..
T Consensus 209 ~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l 283 (361)
T 3ftb_A 209 IIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQ--NPWNINCFAEMAAINCLKD---TNYIEESLLWIKKERKRFIEEL 283 (361)
T ss_dssp EEEESSSTTSCGGGCCEEEEESCHHHHHHHHTTS--CTTCSCHHHHHHHHHTSSC---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeChhhcCCCCcceeEEEeCCHHHHHHHHhhC--CCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHH
Confidence 337899999 699999998 8999998887543 4678899999999988873 3444555555555555555555
Q ss_pred HhCCCce-eeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHH
Q 011777 393 ERHDIIG-DVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLV 467 (477)
Q Consensus 393 ~~~~~~~-~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l 467 (477)
.+++.+. ..++.|.++++.+.. ....++.+.|.++||.+.++..+ .+++||+++ +++++++++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~---~~~~~~~l~ 351 (361)
T 3ftb_A 284 NKIGFIKRVFSPHANFVLCRLEN---------ISGEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK---DEKKNTKFL 351 (361)
T ss_dssp HHSSSEEEEECCSSSEEEEEESS---------SCHHHHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHHHHHHH
T ss_pred HhCCCCceecCCCCeEEEEEcCC---------CCHHHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC---CHHHHHHHH
Confidence 5566565 677889998887732 12457888999999999987433 579999865 788999999
Q ss_pred HHHHHHHhhC
Q 011777 468 DALDYSMSKL 477 (477)
Q Consensus 468 ~~l~~~l~~l 477 (477)
+.|+++.+.+
T Consensus 352 ~~l~~~~~~l 361 (361)
T 3ftb_A 352 RALKGVENNL 361 (361)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhcC
Confidence 9998877653
No 53
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=100.00 E-value=7.9e-34 Score=288.28 Aligned_cols=338 Identities=15% Similarity=0.074 Sum_probs=246.9
Q ss_pred EeeeccEEEeCCCCEEEeecCCcccccCCC-CCHHHHHHHHHHHhhcccc-----ccccCChHHHHHHHHHHhhCCCCCC
Q 011777 83 VEGKMQYLFDENGRRYLDAFAGIVTVSCGH-CHPDVLNAIFEQSKLLQHA-----TTIYLHHAIADFAEALASKMPGNLK 156 (477)
Q Consensus 83 ~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~Av~~~l~~~~~~-----~~~~~~~~~~~l~~~La~~~~~~~~ 156 (477)
..+.+.+++|.||++||||.++. .+|+ .||+|++++.+++++.... ...+..+...+++++|+++++. +
T Consensus 46 ~~~~~~~~~~~~g~~~ld~~s~~---~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~--~ 120 (409)
T 3kki_A 46 KNGKHLVLGKQASPDDIILQSND---YLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGF--D 120 (409)
T ss_dssp TTSSCTTCCCCCCTTSEECCCSC---TTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTC--S
T ss_pred cCCCeeeeCCCCCCceEEeeccC---ccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCC--C
Confidence 35678889999999999998764 3555 5899999999999874211 1112345567899999999854 5
Q ss_pred EEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHH
Q 011777 157 VVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARY 236 (477)
Q Consensus 157 ~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (477)
..++++||++|++.+++... .+++.|++..+ +|+.........+ ...++++. . |
T Consensus 121 ~~i~~~sGt~a~~~~l~~~~--~~gd~Vl~~~~-~~~~~~~~~~~~g------------~~~~~~~~------~-d---- 174 (409)
T 3kki_A 121 ECLLSQSGWNANVGLLQTIC--QPNTNVYIDFF-AHMSLWEGARYAN------------AQAHPFMH------N-N---- 174 (409)
T ss_dssp EEEEESCHHHHHHHHHHHHC--CTTCEEEEETT-SCHHHHHHHHHTT------------CEEEEECT------T-C----
T ss_pred eEEEecchHHHHHHHHHHhc--CCCCEEEECCC-cCHHHHHHHHHcC------------CeEEEecC------C-C----
Confidence 67888999999999998653 24455555544 4444433333322 22222211 1 1
Q ss_pred HHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccC--ccCCCCCCccccccCC--
Q 011777 237 AQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTG--FGRTGSHYWGFETQGV-- 312 (477)
Q Consensus 237 ~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g--fgr~G~~~~~~~~~gv-- 312 (477)
+++|+++++. .++++|+++++++++|.+.+ +++|.++|++||++||+||+|++ +|++| ..+. ..+++
T Consensus 175 ~~~le~~l~~---~~~~~vi~~~~~nptG~~~~----l~~l~~la~~~~~~li~De~~~~g~~g~~g-~~~~-~~~~~~~ 245 (409)
T 3kki_A 175 CDHLRMLIQR---HGPGIIVVDSIYSTLGTIAP----LAELVNISKEFGCALLVDESHSLGTHGPNG-AGLL-AELGLTR 245 (409)
T ss_dssp HHHHHHHHHH---HCSCEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGG-CCHH-HHHTCGG
T ss_pred HHHHHHHHHh---cCCeEEEECCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCC-Ccch-hhcCCCC
Confidence 5888888873 24589999999999997776 99999999999999999999998 77777 3332 44555
Q ss_pred Ccce--eeecccccCccceEEEEeCHHHHHhhcccccc--cCCCCcHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHH
Q 011777 313 IPDI--VTMAKGIGNGLPLGAVVTTPEIANVMAQKIQF--NTFGGNPVCSAGGLAVLRVIDK-ERRQAHCADVGSHLLGR 387 (477)
Q Consensus 313 ~pDi--vt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~--~t~~~~~~~~aaa~a~l~~l~~-~~~~~~~~~~~~~l~~~ 387 (477)
.+|+ .++||++++| .|++++++++++.+...... .+.+.++++++++.++++.+++ +++.++++++++++++.
T Consensus 246 ~~di~~~s~sK~~~~~--gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~ 323 (409)
T 3kki_A 246 EVHFMTASLAKTFAYR--AGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIG 323 (409)
T ss_dssp GCSEEEEESSSTTCSS--CEEEEESSSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeecchhhCCC--ceEEEECHHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 4566 5789999975 49999999988777653222 2334678999999999998765 46778888888888888
Q ss_pred HHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC-----CCCCEEEEeCCCCCcHHH
Q 011777 388 LRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG-----LHGNVFRIKPPMCFTKDD 462 (477)
Q Consensus 388 L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----~~~~~iRi~p~~~~t~e~ 462 (477)
|+++ .+. +.+.|.++++.+.. .....++.+.|+++||++.+.. ...+++||+++..++++|
T Consensus 324 L~~~--g~~----~~~~~~~~~~~~~~--------~~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~ 389 (409)
T 3kki_A 324 LSQL--GLT----IRSESQIIGLETGD--------ERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQ 389 (409)
T ss_dssp HHTT--TCC----CCCSSSEEEEEEES--------HHHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHH
T ss_pred HHHc--CCc----cCCCCCEEEEEeCC--------HHHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHH
Confidence 8765 222 33578888888732 2345678899999999987642 124799999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 011777 463 ADFLVDALDYSMSK 476 (477)
Q Consensus 463 i~~~l~~l~~~l~~ 476 (477)
|++++++|+++++.
T Consensus 390 i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 390 IAKIIEVCSDAVNY 403 (409)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999864
No 54
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=100.00 E-value=2.2e-33 Score=284.62 Aligned_cols=346 Identities=17% Similarity=0.066 Sum_probs=241.7
Q ss_pred CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccC-----ChHHHHHHHHHHhhCC--CCCCEEEEeCChHH
Q 011777 94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYL-----HHAIADFAEALASKMP--GNLKVVYFVNSGTE 166 (477)
Q Consensus 94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~-----~~~~~~l~~~La~~~~--~~~~~v~~~~sGse 166 (477)
.|+.+|||.+|.+. ..||++|++.+++.+++++...... |. .+.+..+++.+.+..+ .+.++|++++||++
T Consensus 32 ~g~~~idl~~g~~~-~~~~~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~ 109 (407)
T 2zc0_A 32 KGVKLISLAAGDPD-PELIPRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTG 109 (407)
T ss_dssp SSCCCEECCSCCCC-TTTSCHHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHH
T ss_pred CCCceEeCCCCCCC-chhCCHHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHH
Confidence 37789999988864 3588999999999999986431112 32 2334445555544335 45678999999999
Q ss_pred HHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhc
Q 011777 167 ANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF 246 (477)
Q Consensus 167 A~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~ 246 (477)
|++.+++.+.. +++.|++..++||+........+. .+..++.. .. .++ +++|+++++.
T Consensus 110 a~~~~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~g~-----------~~~~v~~~--~~-~~d------~~~l~~~l~~ 167 (407)
T 2zc0_A 110 ALDLLGRVLID--PGDVVITENPSYINTLLAFEQLGA-----------KIEGVPVD--ND-GMR------VDLLEEKIKE 167 (407)
T ss_dssp HHHHHHHHHCC--TTCEEEEEESCCHHHHHHHHTTTC-----------EEEEEEEE--TT-EEC------HHHHHHHHHH
T ss_pred HHHHHHHHhcC--CCCEEEEeCCChHHHHHHHHHcCC-----------EEEEcccC--CC-CCC------HHHHHHHHHh
Confidence 99999998743 567899999999987554322211 11122211 00 111 5778887761
Q ss_pred c--CCCCeeEEE-ecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccccc---CCCcceeeec
Q 011777 247 G--TSGKVAGFI-AETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ---GVIPDIVTMA 320 (477)
Q Consensus 247 ~--~~~~~a~vi-~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~---gv~pDivt~s 320 (477)
. ...++++|+ ++..++++|. .++.+++++|.++|++||+++|+||+|+++.++|..+..+..+ +...++.++|
T Consensus 168 ~~~~~~~~~~v~~~~~~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 246 (407)
T 2zc0_A 168 LKAKGQKVKLIYTIPTGQNPMGV-TMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLS 246 (407)
T ss_dssp HHHTTCCEEEEEECCSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEEST
T ss_pred hhcccCCceEEEECCCCCCCCCc-CCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccc
Confidence 1 113677764 5556777885 4578899999999999999999999999987766322233222 3345677899
Q ss_pred ccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhc-----hhhHHHHHHHHHHHHHHHHHHHHHhC
Q 011777 321 KGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID-----KERRQAHCADVGSHLLGRLRTLQERH 395 (477)
Q Consensus 321 K~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~-----~~~~~~~~~~~~~~l~~~L~~l~~~~ 395 (477)
|.+++|+|+|++++++++++.+.......+++.+++++.++.++++... -++..++++++.+++.+.|++. .
T Consensus 247 K~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~ 323 (407)
T 2zc0_A 247 KVLGTGFRIGWIIAEGEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENH---L 323 (407)
T ss_dssp TTTCTTSCCEEEECCHHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHH---C
T ss_pred cccCCCcceEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHh---C
Confidence 9999999999999999999888766666778889999999999998641 1345566666677777766553 2
Q ss_pred CCcee-eeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHc-CceeeccCCC------CCEEEEeCCCCCcHHHHHHHH
Q 011777 396 DIIGD-VRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLREL-GVLVGKGGLH------GNVFRIKPPMCFTKDDADFLV 467 (477)
Q Consensus 396 ~~~~~-v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~------~~~iRi~p~~~~t~e~i~~~l 467 (477)
+.+.. .+..|+++++++... ....++.+.|.++ ||++.++..+ .+++||+++.. +++++++++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~-~~~~i~~~~ 394 (407)
T 2zc0_A 324 PNAEFTKPIAGMFVMFFLPEG--------ADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRP-SKEEIPIGI 394 (407)
T ss_dssp TTSCBCCCSBSSEEEEECSTT--------CCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSS-CTTHHHHHH
T ss_pred CCCEEecCCCcEEEEEEcCCC--------CCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCC-CHHHHHHHH
Confidence 21222 234577888876321 1245688889888 9999886432 47899998876 899999999
Q ss_pred HHHHHHHhh
Q 011777 468 DALDYSMSK 476 (477)
Q Consensus 468 ~~l~~~l~~ 476 (477)
++|++++++
T Consensus 395 ~~l~~~l~~ 403 (407)
T 2zc0_A 395 KKLAKLYKE 403 (407)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998864
No 55
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=100.00 E-value=6.6e-33 Score=284.91 Aligned_cols=346 Identities=12% Similarity=0.074 Sum_probs=238.1
Q ss_pred CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc-----ccccccCChHHHHHHHHHHhhCCC-CCCEEEEeCChHHHH
Q 011777 95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ-----HATTIYLHHAIADFAEALASKMPG-NLKVVYFVNSGTEAN 168 (477)
Q Consensus 95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~-----~~~~~~~~~~~~~l~~~La~~~~~-~~~~v~~~~sGseA~ 168 (477)
+..+|||.+|.+... +++++++.+++.+++++.. +....+..+.++.+++.+.+..+. +.++|++|+||++|+
T Consensus 75 ~~~~i~l~~g~p~~~-~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al 153 (448)
T 3aow_A 75 TSDIISLAGGLPNPK-TFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQAL 153 (448)
T ss_dssp TSSSEECCCCCCCGG-GSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHH
T ss_pred CCCcEeCCCCCCCch-hCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHH
Confidence 456899999887543 5788999999999987632 111112223344444444333354 568999999999999
Q ss_pred HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc-
Q 011777 169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG- 247 (477)
Q Consensus 169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~- 247 (477)
+.+++++. .+++.|++.+++||++.......+ ...+.+|.... .+ | +++|+++++..
T Consensus 154 ~~~~~~l~--~~Gd~Vlv~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~-g~--d----~~~L~~~l~~~~ 211 (448)
T 3aow_A 154 DLIGRVFL--NPGDIVVVEAPTYLAALQAFNFYE-------------PQYIQIPLDDE-GM--K----VEILEEKLKELK 211 (448)
T ss_dssp HHHHHHHC--CTTCEEEEEESCCHHHHHHHHTTC-------------CEEEEEEEETT-EE--C----HHHHHHHHHHHH
T ss_pred HHHHHHHc--CCCCEEEEeCCChHHHHHHHHHcC-------------CEEEEeccCCC-CC--C----HHHHHHHHhhhh
Confidence 99999763 356889999999999766543321 11111111100 11 1 57788877510
Q ss_pred -CCCCeeEEEecc-cCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCC---CccccccCCCcceeeeccc
Q 011777 248 -TSGKVAGFIAET-IQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSH---YWGFETQGVIPDIVTMAKG 322 (477)
Q Consensus 248 -~~~~~a~vi~ep-i~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~---~~~~~~~gv~pDivt~sK~ 322 (477)
...++++|++.| .+|++|. .++.+++++|.++|++||++||+||+|++|.+.|.. +..++..+..+++.+|||.
T Consensus 212 ~~~~~~k~v~~~~~~~NPtG~-~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~ 290 (448)
T 3aow_A 212 SQGKKVKVVYTVPTFQNPAGV-TMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKI 290 (448)
T ss_dssp HTTCCEEEEEECCSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTT
T ss_pred ccCCCCeEEEECCCCCCCcCC-CCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhh
Confidence 113678875554 5666775 468899999999999999999999999998776622 2233444556778899999
Q ss_pred ccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHH----HHHHHHHHHHHHHHHhCC-C
Q 011777 323 IGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCA----DVGSHLLGRLRTLQERHD-I 397 (477)
Q Consensus 323 lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~----~~~~~l~~~L~~l~~~~~-~ 397 (477)
++.|+|+||+++++++++.+.......+++.|+++++++.++|+....+++.++++ ++.+++.+.|++. .+ .
T Consensus 291 ~~~GlriG~v~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~g 367 (448)
T 3aow_A 291 LAPGFRIGWMVGDPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEF---MPEG 367 (448)
T ss_dssp TCGGGCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCTT
T ss_pred ccccccEEEEEeCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCC
Confidence 99899999999999999988766556678889999999999987532233334444 4444444444332 23 2
Q ss_pred ceeee-ccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC------CCEEEEeCCCCCcHHHHHHHHHHH
Q 011777 398 IGDVR-GRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH------GNVFRIKPPMCFTKDDADFLVDAL 470 (477)
Q Consensus 398 ~~~v~-g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~------~~~iRi~p~~~~t~e~i~~~l~~l 470 (477)
+..+. ..|+++|+++... ....++.+.|+++||++.++..+ .+++||+++. .++++|++++++|
T Consensus 368 ~~~~~p~~g~~~~v~~~~~--------~~~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~~~-~~~e~i~~~~~~L 438 (448)
T 3aow_A 368 VKWTKPEGGMFIWVTLPDG--------IDSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTY-VDEDKIMEGIKRL 438 (448)
T ss_dssp CEECCCSBSSEEEEECSTT--------CCHHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSS-SCTHHHHHHHHHH
T ss_pred eEEeCCCccEEEEEEcCCC--------CCHHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEeCC-CCHHHHHHHHHHH
Confidence 33333 3477888887321 12457888899999999987432 4789999876 4899999999999
Q ss_pred HHHHhh
Q 011777 471 DYSMSK 476 (477)
Q Consensus 471 ~~~l~~ 476 (477)
.+++++
T Consensus 439 ~~~l~~ 444 (448)
T 3aow_A 439 AETIKE 444 (448)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998864
No 56
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=100.00 E-value=1e-33 Score=286.20 Aligned_cols=343 Identities=14% Similarity=0.052 Sum_probs=238.7
Q ss_pred CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCC-hHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHH
Q 011777 95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLH-HAIADFAEALASKMPGNLKVVYFVNSGTEANELAML 173 (477)
Q Consensus 95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~-~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~ 173 (477)
++.+|||.+|.+.. .||++|++.+++.+++++.......|.. ....++++.++++++.+.++|++++||++|++.+++
T Consensus 31 ~~~~i~l~~g~~~~-~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~ 109 (397)
T 2zyj_A 31 RPGILSFAGGLPAP-ELFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGK 109 (397)
T ss_dssp STTCEEESSCCCCG-GGCCHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHH
T ss_pred CCCceecCCCCCCc-hhCCHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHH
Confidence 45789999887643 5789999999999998763211122332 245678888888876556789999999999999999
Q ss_pred HHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCee
Q 011777 174 MARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVA 253 (477)
Q Consensus 174 ~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a 253 (477)
.+. .++++|++..++||++.......+. .+..++... . .++ .++|++.++. .+++
T Consensus 110 ~~~--~~gd~Vl~~~p~y~~~~~~~~~~g~-----------~~~~~~~~~--~-~~d------~~~l~~~l~~---~~~~ 164 (397)
T 2zyj_A 110 VFL--DEGSPVLLEAPSYMGAIQAFRLQGP-----------RFLTVPAGE--E-GPD------LDALEEVLKR---ERPR 164 (397)
T ss_dssp HHC--CTTCEEEEEESCCHHHHHHHHTTCC-----------EEEEEEEET--T-EEC------HHHHHHHHHH---CCCS
T ss_pred HhC--CCCCEEEEeCCCcHHHHHHHHHcCC-----------EEEecCcCC--C-CCC------HHHHHHHHhh---cCCe
Confidence 763 3557899999999997665433221 111221110 0 111 5788888863 2456
Q ss_pred EE-EecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccccc------CCCcceeeecccccCc
Q 011777 254 GF-IAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ------GVIPDIVTMAKGIGNG 326 (477)
Q Consensus 254 ~v-i~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~------gv~pDivt~sK~lg~G 326 (477)
+| ++...++++|. .++.+++++|.++|++||+++|+||+|++|.++|..+..+..+ +....+.++||.+++|
T Consensus 165 ~v~~~~~~~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G 243 (397)
T 2zyj_A 165 FLYLIPSFQNPTGG-LTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPG 243 (397)
T ss_dssp CEEECCBSCTTTCC-BCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGG
T ss_pred EEEECCCCcCCCCC-cCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEeccccccccc
Confidence 65 44556677775 4678899999999999999999999999998877322333222 2234456899999988
Q ss_pred cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCC-Ccee-e
Q 011777 327 LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERHD-IIGD-V 401 (477)
Q Consensus 327 ~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~-~~~~-v 401 (477)
+|+|++++++++++.+....+..+++.|+++++++.++|+.... ++..++++++.+++.+.|++. .+ .+.. .
T Consensus 244 ~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~g~~~~~ 320 (397)
T 2zyj_A 244 LRVAFAVAHPEALQKLVQAKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDRE---VPKEVRYTR 320 (397)
T ss_dssp GCCEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH---SCTTSEECC
T ss_pred ceeEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCeEEcc
Confidence 99999999999998887655556777899999999888875321 223333444444444444432 23 2332 2
Q ss_pred eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC------CCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777 402 RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH------GNVFRIKPPMCFTKDDADFLVDALDYSMS 475 (477)
Q Consensus 402 ~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~------~~~iRi~p~~~~t~e~i~~~l~~l~~~l~ 475 (477)
+..|+++++++... ....++.+.|.++||++.++..+ .+++||+++.. +++++++++++|+++++
T Consensus 321 ~~~g~~~~~~~~~~--------~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~ 391 (397)
T 2zyj_A 321 PKGGMFVWMELPKG--------LSAEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYATL-DREGIAEGVRRLGRALK 391 (397)
T ss_dssp CSBSSEEEEECSTT--------CCHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECSSS-CHHHHHHHHHHHHHHHH
T ss_pred CCccEEEEEEcCCC--------CCHHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHH
Confidence 34577888877321 11457888999999999886432 47999998874 89999999999999876
Q ss_pred h
Q 011777 476 K 476 (477)
Q Consensus 476 ~ 476 (477)
+
T Consensus 392 ~ 392 (397)
T 2zyj_A 392 G 392 (397)
T ss_dssp H
T ss_pred H
Confidence 4
No 57
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=100.00 E-value=4.9e-34 Score=289.14 Aligned_cols=361 Identities=12% Similarity=0.030 Sum_probs=243.0
Q ss_pred eEEeeeccEEEeCCCC---EEEeecCCcccccCCCCCHHHHHHHHHHHhhcc---ccccccCChHHHHHHHHHHhhCCCC
Q 011777 81 NIVEGKMQYLFDENGR---RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ---HATTIYLHHAIADFAEALASKMPGN 154 (477)
Q Consensus 81 ~~~~g~G~~~~d~dG~---~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~---~~~~~~~~~~~~~l~~~La~~~~~~ 154 (477)
++..++|.++++.+++ ++|||.+|... +++ .+|+|++|+.+++++.. +....+..+.+.+++++|++.++.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~id~~~g~~~-~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~ 98 (407)
T 3nra_A 21 VRQSAAGLEALIRGAPIEGRPVDFSHGDVD-AHE-PTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAP 98 (407)
T ss_dssp ------CCTTTCCSCCCCSCCEETTSCCTT-TSC-CCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHhhhhHHHhhcCCCCCceeeecCcCCC-CCC-CcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 4556777777666555 69999887653 344 68999999999987532 2223344567888999998887653
Q ss_pred C---CEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCC-Cc-CCCC
Q 011777 155 L---KVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPD-PY-HGSF 229 (477)
Q Consensus 155 ~---~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~ 229 (477)
. ++++|++||++|++.+++.+ ..+++.|++..++|++........+. .+..++... .. ...+
T Consensus 99 ~~~~~~i~~~~g~~~a~~~~~~~l--~~~gd~vl~~~~~~~~~~~~~~~~g~-----------~~~~~~~~~~~~~~~~~ 165 (407)
T 3nra_A 99 VDARDGLIITPGTQGALFLAVAAT--VARGDKVAIVQPDYFANRKLVEFFEG-----------EMVPVQLDYVSADETRA 165 (407)
T ss_dssp CCTTTSEEEESHHHHHHHHHHHTT--CCTTCEEEEEESCCTHHHHHHHHTTC-----------EEEEEEBCCCSSCCSSC
T ss_pred CCCCCcEEEeCCcHHHHHHHHHHh--CCCCCEEEEcCCcccchHHHHHHcCC-----------EEEEeecccccccCcCC
Confidence 2 68999999999999999865 23667899999999987654443321 111222100 00 0111
Q ss_pred CCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccc
Q 011777 230 GSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFET 309 (477)
Q Consensus 230 ~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~ 309 (477)
..| ++++++.++. ++++|+++..++++|. .++++++++|.++|++||+++|+||+|++|+++|..+..+..
T Consensus 166 ~~d----~~~l~~~l~~----~~~~v~~~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~ 236 (407)
T 3nra_A 166 GLD----LTGLEEAFKA----GARVFLFSNPNNPAGV-VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRA 236 (407)
T ss_dssp CBC----HHHHHHHHHT----TCCEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGG
T ss_pred CcC----HHHHHHHHhh----CCcEEEEcCCCCCCCc-ccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhh
Confidence 112 5788888872 4455555555777774 558889999999999999999999999999887733333333
Q ss_pred -----cCCCcceeeeccccc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Q 011777 310 -----QGVIPDIVTMAKGIG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSH 383 (477)
Q Consensus 310 -----~gv~pDivt~sK~lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~ 383 (477)
.+..+++.++||.++ +|+|+|++++++++++.+....+..+++.++++++++.++|+. .+++.++..+..+.
T Consensus 237 ~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~ 314 (407)
T 3nra_A 237 EAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDE--APGWMEDRIARHQA 314 (407)
T ss_dssp CTTSCGGGEEEEECSSSTTCCGGGCCEEEEECHHHHHHHHHHHHHHTSSSCHHHHGGGGGTTCC--CTTHHHHHHHHHHH
T ss_pred cCcccCCcEEEEeCcccccCCCeeeEEEEEcCHHHHHHHHHHHhhhccCCChHHHHHHHHHHhc--cchHHHHHHHHHHH
Confidence 233355668999999 7999999999999999887766667888889988888777753 12333333444444
Q ss_pred HHHHHHHHHHhCCCceeeecc-ceeEEEEEeeCCCCCCccHHHHHHHHHHHHH-cCceeeccCCC----CCEEEEeCCCC
Q 011777 384 LLGRLRTLQERHDIIGDVRGR-GLMVGMELVTDRKEKTPAKAETAVLFEKLRE-LGVLVGKGGLH----GNVFRIKPPMC 457 (477)
Q Consensus 384 l~~~L~~l~~~~~~~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~p~~~ 457 (477)
+++.|.+...+++.+..+.+. |+++++.+... .....++.+.|++ +||++.++..+ .+++||+++.
T Consensus 315 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~- 386 (407)
T 3nra_A 315 IRDELLHVLRGCEGVFARTPQAGSYLFPRLPKL-------AVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQ- 386 (407)
T ss_dssp HHHHHHHHHHTSTTCBCCCCSBSSEECCBCCCB-------SSCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCS-
T ss_pred HHHHHHHHHhcCCCceeccCCeeEEEEEeCCCC-------CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCC-
Confidence 444444444445434333444 47777766321 1124567788865 59999987433 4789998774
Q ss_pred CcHHHHHHHHHHHHHHHhh
Q 011777 458 FTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 458 ~t~e~i~~~l~~l~~~l~~ 476 (477)
++++|++++++|++++++
T Consensus 387 -~~~~i~~~~~~l~~~~~~ 404 (407)
T 3nra_A 387 -DHEAAVAAARRIVTLVER 404 (407)
T ss_dssp -CHHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHH
Confidence 999999999999998864
No 58
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=100.00 E-value=2e-32 Score=275.33 Aligned_cols=344 Identities=18% Similarity=0.187 Sum_probs=250.1
Q ss_pred ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCC-CCCHHHHHHHHHHHhhccc--ccccc---CChHHHHHHHHHHh
Q 011777 76 YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCG-HCHPDVLNAIFEQSKLLQH--ATTIY---LHHAIADFAEALAS 149 (477)
Q Consensus 76 ~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lG-h~~p~v~~Av~~~l~~~~~--~~~~~---~~~~~~~l~~~La~ 149 (477)
++.|+.+.+++|.+++ .+|+.||||.++.. +| |++|++.+++.++++.... ....+ ..+...++++.|++
T Consensus 20 ~~~~~~~~~~~g~~~~-~~g~~~id~~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~ 95 (384)
T 1bs0_A 20 LRRRYPVAQGAGRWLV-ADDRQYLNFSSNDY---LGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAE 95 (384)
T ss_dssp CCCCCCCSBCSSSEEE-ETTEEEEECSCCCT---TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHH
T ss_pred ccccccccCCCCceEE-ECCceEEEeeccCc---cCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHH
Confidence 4567888999999999 79999999998743 78 5899999999999976322 11122 34778899999999
Q ss_pred hCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCC
Q 011777 150 KMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSF 229 (477)
Q Consensus 150 ~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (477)
+++. +..++++||++|++.+++.+ .++.+.|++...+|+.....+... |...+.+|.
T Consensus 96 ~~g~--~~~i~~~sGt~a~~~~~~~~---~~~gd~v~~~~~~~~~~~~~~~~~------------g~~~~~~~~------ 152 (384)
T 1bs0_A 96 WLGY--SRALLFISGFAANQAVIAAM---MAKEDRIAADRLSHASLLEAASLS------------PSQLRRFAH------ 152 (384)
T ss_dssp HHTC--SEEEEESCHHHHHHHHHHHH---CCTTCEEEEETTCCHHHHHHHHTS------------SSEEEEECT------
T ss_pred HhCC--CcEEEeCCcHHHHHHHHHHh---CCCCcEEEEcccccHHHHHHHHHc------------CCCEEEeCC------
Confidence 9865 46788888999999999865 233344555556666544443332 222222221
Q ss_pred CCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc-Cc-cCCCCCCccc
Q 011777 230 GSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT-GF-GRTGSHYWGF 307 (477)
Q Consensus 230 ~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-gf-gr~G~~~~~~ 307 (477)
. | .++++++++... +++++|+++++++++|.+.+ +++|.++|++||+++|+||+|. |+ +++| ..+ .
T Consensus 153 ~-d----~~~l~~~l~~~~-~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~-~~~-~ 220 (384)
T 1bs0_A 153 N-D----VTHLARLLASPC-PGQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHGTGVIGEQG-RGS-C 220 (384)
T ss_dssp T-C----HHHHHHHHHSCC-SSCEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTSSGGG-CCH-H
T ss_pred C-C----HHHHHHHHHhcC-CCCeEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCcccceecCCC-Cch-H
Confidence 1 1 478888887322 24789999989999998776 8999999999999999999996 32 4445 222 2
Q ss_pred cccCCCccee--eecccccCccceEEEEeCHHHHHhhccc--ccccCCCCcHHHHHHHHHHHHhhch---hhHHHHHHHH
Q 011777 308 ETQGVIPDIV--TMAKGIGNGLPLGAVVTTPEIANVMAQK--IQFNTFGGNPVCSAGGLAVLRVIDK---ERRQAHCADV 380 (477)
Q Consensus 308 ~~~gv~pDiv--t~sK~lg~G~pig~v~~~~~~~~~~~~~--~~~~t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~ 380 (477)
+.++..+|++ ++||.++. +.|++++++++++.+... .+..+.+.|++.++++.++++.+++ ++..++++++
T Consensus 221 ~~~~~~~di~~~s~sK~~~~--~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 298 (384)
T 1bs0_A 221 WLQKVKPELLVVTFGKGFGV--SGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAAL 298 (384)
T ss_dssp HHTTCCCSEEEEESSSTTSS--CCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred HhcCCCCcEEEeeccchhhc--cCcEEEeCHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 4556678888 89999984 339999999998877653 2334457899999999999988752 3566777777
Q ss_pred HHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC-----CCEEEEeCC
Q 011777 381 GSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH-----GNVFRIKPP 455 (477)
Q Consensus 381 ~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-----~~~iRi~p~ 455 (477)
.+++.+.|+++ +. ....+.|.++++.+. ......++.+.|.++||.+.++..+ .+++||+++
T Consensus 299 ~~~l~~~L~~~----g~-~~~~~~~~~~~~~~~--------~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~ 365 (384)
T 1bs0_A 299 ITRFRAGVQDL----PF-TLADSCSAIQPLIVG--------DNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLT 365 (384)
T ss_dssp HHHHHHHHTTS----SC-EECSCCSSBCCEEEE--------SHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCC
T ss_pred HHHHHHHHHhc----CC-cccCCCCCEEEEEeC--------CHHHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEc
Confidence 77777777653 32 112356778788773 2234567889999999999887432 368999999
Q ss_pred CCCcHHHHHHHHHHHHHH
Q 011777 456 MCFTKDDADFLVDALDYS 473 (477)
Q Consensus 456 ~~~t~e~i~~~l~~l~~~ 473 (477)
..++++++++++++|+++
T Consensus 366 ~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 366 AAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp TTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 888999999999999875
No 59
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=100.00 E-value=2.8e-33 Score=282.65 Aligned_cols=354 Identities=14% Similarity=0.080 Sum_probs=244.9
Q ss_pred eeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccc-cccCChHHHHHHHHHHhhCCC---CC
Q 011777 80 LNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHAT-TIYLHHAIADFAEALASKMPG---NL 155 (477)
Q Consensus 80 ~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~-~~~~~~~~~~l~~~La~~~~~---~~ 155 (477)
+....+.+.+++|.+|+.+|||.+|.. .++ .+|+|.+++.++++...++. ..+..+.+.++++.+.+.++. +.
T Consensus 14 ~~~~~~~~~~~~~~~g~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~ 90 (396)
T 3jtx_A 14 FARLHEAMQGISAPEGMEAVPLHIGEP--KHP-TPKVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTVDA 90 (396)
T ss_dssp HHHHHHHTTTCCCCTTCCCEECSCCSC--CSC-CCHHHHHHHHHTGGGGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCT
T ss_pred HHHHHHHHHhhhhccCCCeEEeCCcCC--CCC-CCHHHHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCC
Confidence 434456777788999999999998874 344 68999999999886543222 223456677888888776653 36
Q ss_pred C-EEEEeCChHHHHHHHHHHHHhccC---CceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCC
Q 011777 156 K-VVYFVNSGTEANELAMLMARLSTG---NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGS 231 (477)
Q Consensus 156 ~-~v~~~~sGseA~~~Al~~ar~~~~---~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (477)
+ +|++|+||++|++.+++.+....+ ++.|++..++||++.......+. .+..++.+ ...+..
T Consensus 91 ~~~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~-----------~~~~v~~~---~~g~~~ 156 (396)
T 3jtx_A 91 DNEILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGG-----------EIHFANCP---APSFNP 156 (396)
T ss_dssp TTSEEEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHHHTTC-----------EEEEEECC---TTTCCC
T ss_pred CCeEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHHHHHcCC-----------EEEEeecC---CCCCcc
Confidence 7 899999999999999997754211 26899999999988665443322 11222220 111111
Q ss_pred CHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccc---
Q 011777 232 DAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFE--- 308 (477)
Q Consensus 232 ~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~--- 308 (477)
| +++++++++ .++++|+++..+|++|. .++.+.+++|.++|++||+++|+||+|++|.++|..+++..
T Consensus 157 d----~~~l~~~~~----~~~~~v~l~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 227 (396)
T 3jtx_A 157 D----WRSISEEVW----KRTKLVFVCSPNNPSGS-VLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAA 227 (396)
T ss_dssp C----GGGSCHHHH----HTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHH
T ss_pred C----HHHHHHhhc----cCcEEEEEECCCCCCCC-cCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhh
Confidence 1 356777776 25677776666777775 45777799999999999999999999999988763233321
Q ss_pred -----ccCCCcceeeeccccc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHH
Q 011777 309 -----TQGVIPDIVTMAKGIG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGS 382 (477)
Q Consensus 309 -----~~gv~pDivt~sK~lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~ 382 (477)
..+..+++.++||.++ +|+|+||+++++++++.+....+..+++.|+++++++.++|+. ++..++.++..+
T Consensus 228 ~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~ 304 (396)
T 3jtx_A 228 AQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYRTYHGSAMSIPVQRASIAAWDD---EQHVIDNRRLYQ 304 (396)
T ss_dssp HHTTCCCTTEEEEEESTTTSSCGGGCCEEEEECHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHC---CHHHHHHHHHHH
T ss_pred hhcccccCcEEEEeccccccCCcccceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHhCC---HHHHHHHHHHHH
Confidence 1456677789999987 5899999999999999887766667888999999999999874 333333444434
Q ss_pred HHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCC----------CCCEEE
Q 011777 383 HLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGL----------HGNVFR 451 (477)
Q Consensus 383 ~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~----------~~~~iR 451 (477)
..++.+.+...++..+ .....|+++++++.. .....+.+.|+ ++||.+.++.. ..+++|
T Consensus 305 ~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iR 374 (396)
T 3jtx_A 305 EKFERVIPILQQVFDV-KLPDASFYIWLKVPD---------GDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVR 374 (396)
T ss_dssp HHHHHHHHHHTTTSCC-CCCSSSSEEEEECTT---------SCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEE
T ss_pred HHHHHHHHHHHhcCCc-cCCCeeEEEEEECCC---------CCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEE
Confidence 4444443333332111 123347788887732 01346777775 56999988742 247999
Q ss_pred EeCCCCCcHHHHHHHHHHHHHHH
Q 011777 452 IKPPMCFTKDDADFLVDALDYSM 474 (477)
Q Consensus 452 i~p~~~~t~e~i~~~l~~l~~~l 474 (477)
|+++. +++++++++++|++++
T Consensus 375 is~~~--~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 375 IALVA--DVATCVKAAEDIVSLY 395 (396)
T ss_dssp EECCS--CHHHHHHHHHHHHHHC
T ss_pred EEEcC--CHHHHHHHHHHHHHHh
Confidence 98664 9999999999999875
No 60
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=2.1e-33 Score=286.77 Aligned_cols=349 Identities=13% Similarity=0.029 Sum_probs=239.3
Q ss_pred CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc-----ccccccCChHHHHHHHHHHhhCC---CCCCEEEEeCChHH
Q 011777 95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ-----HATTIYLHHAIADFAEALASKMP---GNLKVVYFVNSGTE 166 (477)
Q Consensus 95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~-----~~~~~~~~~~~~~l~~~La~~~~---~~~~~v~~~~sGse 166 (477)
++.+|||.+|.+.. .||++|++.+++.++++... +....+..+.+.++++.+.+.++ .+.++|++++||++
T Consensus 42 ~~~~idl~~g~~~~-~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~ 120 (425)
T 1vp4_A 42 DKDAISFGGGVPDP-ETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQ 120 (425)
T ss_dssp STTCEECCCCSCCG-GGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHH
T ss_pred CCCceeCCCCCCCc-ccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHH
Confidence 56799999988653 58899999999999987632 11111223445555555544425 45678999999999
Q ss_pred HHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhc
Q 011777 167 ANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF 246 (477)
Q Consensus 167 A~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~ 246 (477)
|++.+++... .+++.|++.+++||++.......+. .+..++... . .++ +++|+++++.
T Consensus 121 al~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~g~-----------~~~~v~~~~--~-~~d------~~~l~~~l~~ 178 (425)
T 1vp4_A 121 ALDLIGKLFL--DDESYCVLDDPAYLGAINAFRQYLA-----------NFVVVPLED--D-GMD------LNVLERKLSE 178 (425)
T ss_dssp HHHHHHHHHC--CTTCEEEEEESCCHHHHHHHHTTTC-----------EEEEEEEET--T-EEC------HHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEEeCCCcHHHHHHHHHcCC-----------EEEEeccCC--C-CCC------HHHHHHHHHh
Confidence 9999998663 3567899999999997665433221 111121110 0 111 5778887763
Q ss_pred c----CCCCeeEEE-ecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccc---cCCCcceee
Q 011777 247 G----TSGKVAGFI-AETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFET---QGVIPDIVT 318 (477)
Q Consensus 247 ~----~~~~~a~vi-~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~---~gv~pDivt 318 (477)
. +..++++|+ +...++++|. .++.+++++|.++|++||+++|+||+|++|.++|..+..+.. .+....+.+
T Consensus 179 ~~~~~~~~~~~~v~~~~~~~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s 257 (425)
T 1vp4_A 179 FDKNGKIKQVKFIYVVSNFHNPAGV-TTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNT 257 (425)
T ss_dssp HHHTTCGGGEEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEE
T ss_pred hhhcccCCCceEEEECCCCCCCCCC-cCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEec
Confidence 1 012577774 4456677775 467889999999999999999999999999877632223322 233344568
Q ss_pred ecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch----hhHHHHHHHHHHHHHHHHHHHHHh
Q 011777 319 MAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK----ERRQAHCADVGSHLLGRLRTLQER 394 (477)
Q Consensus 319 ~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~----~~~~~~~~~~~~~l~~~L~~l~~~ 394 (477)
+||.+++|+|+||+++++++++.+.......+++.|+++++++.++|+.... ++..++++++.+++.+.|++....
T Consensus 258 ~sK~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 337 (425)
T 1vp4_A 258 FSKVLAPGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSD 337 (425)
T ss_dssp STTTTCGGGCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred cccccccccceEEEeeCHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999998999999999999998887655556778899999999999986422 234455556666666666554211
Q ss_pred CCCceee-eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC------CCEEEEeCCCCCcHHHHHHHH
Q 011777 395 HDIIGDV-RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH------GNVFRIKPPMCFTKDDADFLV 467 (477)
Q Consensus 395 ~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~------~~~iRi~p~~~~t~e~i~~~l 467 (477)
++.+..+ +..|+++++++.... ...++.+.|.++||++.++..+ .+++||+++.. +++++++++
T Consensus 338 ~~g~~~~~~~~g~~~~~~~~~~~--------~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~e~i~~~l 408 (425)
T 1vp4_A 338 IPGVKWVKSEGGLFIWLTLPEGF--------DTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLP-PDEKIVEGI 408 (425)
T ss_dssp STTCEECCCSBSSEEEEECCTTC--------CTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSS-CHHHHHHHH
T ss_pred CCceEEecCCccEEEEEEcCCCC--------CHHHHHHHHHHCCCEEECchhhcCCCCCCCeEEEEeCCC-CHHHHHHHH
Confidence 1123322 445778888874211 1235778888889999887432 47899998774 899999999
Q ss_pred HHHHHHHhh
Q 011777 468 DALDYSMSK 476 (477)
Q Consensus 468 ~~l~~~l~~ 476 (477)
++|++++++
T Consensus 409 ~~l~~~l~~ 417 (425)
T 1vp4_A 409 KRLREVVLE 417 (425)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 61
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=100.00 E-value=1.1e-32 Score=277.90 Aligned_cols=341 Identities=15% Similarity=0.076 Sum_probs=228.7
Q ss_pred CCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccc--cccccCChHHHHHHHHHHhhCC--CCCCEEEEeCChHHHH
Q 011777 93 ENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH--ATTIYLHHAIADFAEALASKMP--GNLKVVYFVNSGTEAN 168 (477)
Q Consensus 93 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~--~~~~~~~~~~~~l~~~La~~~~--~~~~~v~~~~sGseA~ 168 (477)
.+|++||||.+|... ++. +|+|.+++.+++++... ....+..+.++.+++.+.+.++ .+.++|+||+||++|+
T Consensus 28 ~~g~~~i~l~~g~~~--~~~-~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al 104 (391)
T 3h14_A 28 EAGRRIIHMEVGQPG--TGA-PRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGF 104 (391)
T ss_dssp HTTCCCEECCCSSCS--SCS-CHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHH
T ss_pred hcCCCeEEccCCCCC--CCC-CHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHH
Confidence 478999999988753 443 78999999998875321 1111223445555555554433 4567899999999999
Q ss_pred HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777 169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT 248 (477)
Q Consensus 169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~ 248 (477)
+.+++... .+++.|++..++|++........ |...+.+|......+..| ++++++.
T Consensus 105 ~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~----- 160 (391)
T 3h14_A 105 LLAFTALF--DSGDRVGIGAPGYPSYRQILRAL-------------GLVPVDLPTAPENRLQPV----PADFAGL----- 160 (391)
T ss_dssp HHHHHHHC--CTTCEEEEEESCCHHHHHHHHHT-------------TCEEEEEECCGGGTTSCC----HHHHTTS-----
T ss_pred HHHHHHhc--CCCCEEEEcCCCCccHHHHHHHc-------------CCEEEEeecCcccCCCCC----HHHHHhc-----
Confidence 99998764 35678999999999876544332 222222222111112111 3444432
Q ss_pred CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc-cccCCCcceeeeccccc-Cc
Q 011777 249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF-ETQGVIPDIVTMAKGIG-NG 326 (477)
Q Consensus 249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~-~~~gv~pDivt~sK~lg-~G 326 (477)
++++|+++..++++|. ..+.+.+++|.++|++||+++|+||+|++|.++| ..... +..+....+.++||.+| +|
T Consensus 161 --~~~~v~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~g~~G 236 (391)
T 3h14_A 161 --DLAGLMVASPANPTGT-MLDHAAMGALIEAAQAQGASFISDEIYHGIEYEA-KAVTALELTDECYVINSFSKYFSMTG 236 (391)
T ss_dssp --CCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS-CCCCGGGTCSSSEEEEESSSTTCCTT
T ss_pred --CCeEEEECCCCCCCCc-cCCHHHHHHHHHHHHHcCCEEEEECcchhcccCC-CCcChhhcCCCEEEEEechhccCCcc
Confidence 4566777677778885 4577889999999999999999999999998877 33322 33233344458999998 79
Q ss_pred cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeecc-c
Q 011777 327 LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGR-G 405 (477)
Q Consensus 327 ~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~-g 405 (477)
+|+||+++++++++.+.......+++.|+++++++.++++ .++..++.++..+.+++.+.+...+++.....++. |
T Consensus 237 ~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 313 (391)
T 3h14_A 237 WRVGWMVVPEDQVRVVERIAQNMFICAPHASQVAALAALD---CDAELQANLDVYKANRKLMLERLPKAGFTRIAPPDGA 313 (391)
T ss_dssp SCCEEEECCGGGHHHHHHHHHHTTCCCCHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCCBT
T ss_pred ceeEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCee
Confidence 9999999999999888776667788999999999988887 22333444444444444444433334444333444 4
Q ss_pred eeEEEEEeeCCCCCCccHHHHHHHHHHHHHc-CceeeccCCC-----CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 406 LMVGMELVTDRKEKTPAKAETAVLFEKLREL-GVLVGKGGLH-----GNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 406 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~-----~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
+++++++.... ....++.+.|+++ ||.+.++..+ .+++||+++. ++++|++++++|++++++
T Consensus 314 ~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~--~~~~i~~~l~~l~~~~~~ 381 (391)
T 3h14_A 314 FYVYADVSDLT-------DDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR--ATADIEEGLDRLEAFMQA 381 (391)
T ss_dssp TEEEEECTTTC-------SCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCccC-------CCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHH
Confidence 66677663210 1245677787775 9999987433 4689998775 889999999999998864
No 62
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=100.00 E-value=7.8e-33 Score=276.46 Aligned_cols=333 Identities=14% Similarity=0.072 Sum_probs=231.0
Q ss_pred EeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHH
Q 011777 91 FDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANEL 170 (477)
Q Consensus 91 ~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~ 170 (477)
++.||+++|||.++. +++| .+|++.+++.++++... .|..+...++++.|+++++.+.++|+|++||++|++.
T Consensus 19 ~~~~~~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~----~y~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~ 91 (364)
T 1lc5_A 19 LGISPDQLLDFSANI--NPLG-MPVSVKRALIDNLDCIE----RYPDADYFHLHQALARHHQVPASWILAGNGETESIFT 91 (364)
T ss_dssp HTSCGGGSEECSSCC--CTTC-CCHHHHHHHHHTGGGGG----SCCCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHH
T ss_pred cCCCccceEEecccc--CCCC-CCHHHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHH
Confidence 356888999998877 3577 78999999999876522 2334446788899999887666789999999999999
Q ss_pred HHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCC
Q 011777 171 AMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG 250 (477)
Q Consensus 171 Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~ 250 (477)
+++.+ .+ ++|++..++||++.......+. .+..++.. ....+.. ++++.+.+. +
T Consensus 92 ~~~~~---~g-d~vl~~~p~y~~~~~~~~~~g~-----------~~~~v~~~--~~~~~~~-----l~~~~~~~~----~ 145 (364)
T 1lc5_A 92 VASGL---KP-RRAMIVTPGFAEYGRALAQSGC-----------EIRRWSLR--EADGWQL-----TDAILEALT----P 145 (364)
T ss_dssp HHHHH---CC-SEEEEEESCCTHHHHHHHHTTC-----------EEEEEECC--GGGTTCC-----CTTHHHHCC----T
T ss_pred HHHHc---CC-CeEEEeCCCcHHHHHHHHHcCC-----------eEEEEeCC--cccccch-----hHHHHHhcc----C
Confidence 99977 34 8899999999997665443321 11112111 1001110 122222222 3
Q ss_pred CeeEEE-ecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc-cccCCCcceeeeccccc-Ccc
Q 011777 251 KVAGFI-AETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF-ETQGVIPDIVTMAKGIG-NGL 327 (477)
Q Consensus 251 ~~a~vi-~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~-~~~gv~pDivt~sK~lg-~G~ 327 (477)
++++|+ ++| ++++|. .++.+++++|.++|++||+++|+||+|++|++++..+... +..+....+.++||.++ +|+
T Consensus 146 ~~~~v~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ 223 (364)
T 1lc5_A 146 DLDCLFLCTP-NNPTGL-LPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGL 223 (364)
T ss_dssp TCCEEEEESS-CTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTT
T ss_pred CCCEEEEeCC-CCCCCC-CCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCcc
Confidence 445444 566 666674 4688999999999999999999999999987654222222 33444455668999999 799
Q ss_pred ceEEEE-eCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccce
Q 011777 328 PLGAVV-TTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGL 406 (477)
Q Consensus 328 pig~v~-~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~ 406 (477)
|+||++ +++++++.+.... .+++.|+++++++.++|+. .++.++.++..+..++.+.+...+++.+...++.|.
T Consensus 224 r~G~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~ 298 (364)
T 1lc5_A 224 RLGYLVNSDDAAMARMRRQQ--MPWSVNALAALAGEVALQD---SAWQQATWHWLREEGARFYQALCQLPLLTVYPGRAN 298 (364)
T ss_dssp CCEEEECCCHHHHHHHHHHS--CTTCSCHHHHHHHHHGGGC---HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCCSSS
T ss_pred ceEEEEECCHHHHHHHHHhC--CCCCCCHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCCCCe
Confidence 999999 9999988876533 4678899999999888864 234444444444444555444444544444567788
Q ss_pred eEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 407 MVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 407 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
++++++..+ ...+.+.|+++||.+.++..+ .+++||++. +++|++++++.|++++++
T Consensus 299 ~~~~~~~~~----------~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~---~~~~~~~l~~~l~~~~~~ 359 (364)
T 1lc5_A 299 YLLLRCERE----------DIDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR---SAAQNERLLAALRNVLTG 359 (364)
T ss_dssp EEEEEESCT----------TCCHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHC--
T ss_pred EEEEECCCc----------HHHHHHHHHHCCcEEeeCcccCCCCCCEEEEEeC---CHHHHHHHHHHHHHHhhc
Confidence 888876321 225778888999999987543 479999743 689999999999988764
No 63
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=100.00 E-value=3.4e-32 Score=270.50 Aligned_cols=338 Identities=14% Similarity=0.086 Sum_probs=243.6
Q ss_pred eeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCCh
Q 011777 85 GKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSG 164 (477)
Q Consensus 85 g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sG 164 (477)
.+|.++++.+|+.+|||.++. ++++ .+|+|++++.+++... ..|+.+...+++++++++++.+.+++++++||
T Consensus 5 ~~~~~~~~~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~l~~~la~~~~~~~~~i~~~~g~ 77 (354)
T 3ly1_A 5 PESAAFTAPSTDNPIRINFNE--NPLG-MSPKAQAAARDAVVKA----NRYAKNEILMLGNKLAAHHQVEAPSILLTAGS 77 (354)
T ss_dssp ----CCCCCCSSSCEECSSCC--CSSC-CCHHHHHHHHHTGGGT----TSCCHHHHHHHHHHHHHHTTSCGGGEEEESHH
T ss_pred cccccccCCCCCceEEccCCC--CCCC-CCHHHHHHHHHHHhhC----cCCCCCchHHHHHHHHHHhCCChHHEEEeCCh
Confidence 467788899999999999876 3555 7899999999987652 23455677899999999998777899999999
Q ss_pred HHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHH
Q 011777 165 TEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHI 244 (477)
Q Consensus 165 seA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i 244 (477)
++|++.+++... .+++.|++..++|+++....... |...+.+|......++ ++++++.+
T Consensus 78 ~~a~~~~~~~l~--~~gd~vl~~~~~~~~~~~~~~~~-------------g~~~~~~~~~~~~~~d------~~~l~~~l 136 (354)
T 3ly1_A 78 SEGIRAAIEAYA--SLEAQLVIPELTYGDGEHFAKIA-------------GMKVTKVKMLDNWAFD------IEGLKAAV 136 (354)
T ss_dssp HHHHHHHHHHHC--CTTCEEEEESSSCTHHHHHHHHT-------------TCEEEEECCCTTSCCC------HHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCeEEECCCCchHHHHHHHHc-------------CCEEEEecCCCCCCCC------HHHHHHHh
Confidence 999999999763 35678999999999875544332 2222222221111222 57888888
Q ss_pred hccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcc-c---ccc-CCCcceeee
Q 011777 245 DFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWG-F---ETQ-GVIPDIVTM 319 (477)
Q Consensus 245 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~-~---~~~-gv~pDivt~ 319 (477)
+. ..++++|+++..++++|.+. +.+.+++|.++| +||+++|+||+|++|.+.+ .... . +.. +....+.++
T Consensus 137 ~~--~~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~ 211 (354)
T 3ly1_A 137 AA--YSGPSIVYLVNPNNPTGTIT-PADVIEPWIASK-PANTMFIVDEAYAEFVNDP-RFRSISPMITQGAENIILLKTF 211 (354)
T ss_dssp HT--CSSCEEEEEESSCTTTCCCC-CHHHHHHHHHTC-CTTEEEEEECTTGGGCCCT-TCCCSHHHHHTTCSSEEEEEES
T ss_pred cc--CCCCCEEEEeCCCCCcCCCc-CHHHHHHHHHhC-CCCeEEEEeccHHHhcccc-ccCCHHHHhhhcCCCEEEEeeC
Confidence 62 13677777777778888544 666778888877 7999999999999998776 2221 1 222 444556689
Q ss_pred ccccc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHHHHhCCC
Q 011777 320 AKGIG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK-ERRQAHCADVGSHLLGRLRTLQERHDI 397 (477)
Q Consensus 320 sK~lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~ 397 (477)
||.+| +|+|+|++++++++++.+..... .++.|+++++++.++|+..+. ++..++++++.+++.+.|+++ +
T Consensus 212 sK~~g~~G~r~G~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----~- 284 (354)
T 3ly1_A 212 SKIHAMAGMRVGYAVAHPTVIALMGRYVA--GEKINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDL----K- 284 (354)
T ss_dssp SSTTCCGGGCCEEEECCHHHHHHHGGGTT--CSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH----T-
T ss_pred hhhccChhhhheeeecCHHHHHHHHHhcC--CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC----C-
Confidence 99999 79999999999999998876543 378899999999998874321 334455555666666666554 2
Q ss_pred ceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC--CCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777 398 IGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL--HGNVFRIKPPMCFTKDDADFLVDALDYSMS 475 (477)
Q Consensus 398 ~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~ 475 (477)
+...++.|.++++++.. ...++.+.|.++||++. +.. ..+++||++. +++|+++++++|+++++
T Consensus 285 ~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~gi~v~-g~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l~ 350 (354)
T 3ly1_A 285 LPYLPSEGNFVFHQLVV----------PLKDYQTHMADAGVLIG-RAFPPADNWCRISLG---TPQEMQWVADTMREFRK 350 (354)
T ss_dssp CCBCCCCSSEEEEECSS----------CHHHHHHHHHHTTEECC-CCCTTCTTEEEEECC---CHHHHHHHHHHHHHHHH
T ss_pred CeECCCCceEEEEECCC----------CHHHHHHHHHHCCEEEe-ecCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHH
Confidence 23345678888887632 14578888999999988 422 3579999754 89999999999999886
Q ss_pred h
Q 011777 476 K 476 (477)
Q Consensus 476 ~ 476 (477)
+
T Consensus 351 ~ 351 (354)
T 3ly1_A 351 K 351 (354)
T ss_dssp T
T ss_pred h
Confidence 4
No 64
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=100.00 E-value=7.6e-33 Score=277.49 Aligned_cols=334 Identities=11% Similarity=0.019 Sum_probs=234.8
Q ss_pred CCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccc-ccCChHHHHHHHHHHhhCCC--CCCEEEEeCChHHHHH
Q 011777 93 ENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT-IYLHHAIADFAEALASKMPG--NLKVVYFVNSGTEANE 169 (477)
Q Consensus 93 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~-~~~~~~~~~l~~~La~~~~~--~~~~v~~~~sGseA~~ 169 (477)
.+| .+|||.+|.. .++ .+|+|.+++.+++.....+.. .+..+.+.++++.+.+.++. +.++|+||+||++|++
T Consensus 21 ~~g-~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~ 96 (376)
T 3ezs_A 21 PKK-RGLDLGIGEP--QFE-TPKFIQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLF 96 (376)
T ss_dssp CSS-CCCBCSSCCC--CSC-CCHHHHHHHHTTGGGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHH
T ss_pred ccC-CEEEeCCCCC--CCC-CCHHHHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHH
Confidence 467 8999998874 455 689999999988744322221 22345566777777665554 5689999999999999
Q ss_pred HHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCC
Q 011777 170 LAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTS 249 (477)
Q Consensus 170 ~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~ 249 (477)
.+++.+...++++.|++..++||++.......+. ..+.+|......+. . ++++.+.
T Consensus 97 ~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~------~-~l~~~~~---- 152 (376)
T 3ezs_A 97 NFPSFVLFDYQNPTIAYPNPFYQIYEGAAKFIKA-------------KSLLMPLTKENDFT------P-SLNEKEL---- 152 (376)
T ss_dssp HHHHHHTTTCSSCEEEEEESCCTHHHHHHHHTTC-------------EEEEEECCGGGTSC------C-CCCHHHH----
T ss_pred HHHHHHcCCCCCCEEEEecCCcHhHHHHHHHcCC-------------EEEEcccCCCCCcc------h-hHHhhhc----
Confidence 9999875433378999999999987665443321 11221111111111 0 3444444
Q ss_pred CCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc-c--------ccCCCcceeeec
Q 011777 250 GKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF-E--------TQGVIPDIVTMA 320 (477)
Q Consensus 250 ~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~-~--------~~gv~pDivt~s 320 (477)
.++++|+++..++++|. .++.+.+++|.++|++||+++|+||+|++|.++| ..... + ..+..+.+.++|
T Consensus 153 ~~~~~v~~~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~s~s 230 (376)
T 3ezs_A 153 QEVDLVILNSPNNPTGR-TLSLEELISWVKLALKHDFILINDECYSEIYENT-PPPSLLEACMLAGNEAFKNVLVIHSLS 230 (376)
T ss_dssp HHCSEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSS-CCCCHHHHHHHTTCTTCTTEEEEEEST
T ss_pred cCCCEEEEcCCCCCcCC-CCCHHHHHHHHHHHHHcCcEEEEEccchhhccCC-CCCCHHHccccccccccCcEEEEecch
Confidence 13455555555777774 5578889999999999999999999999998877 44433 2 345666777999
Q ss_pred cccc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCce
Q 011777 321 KGIG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIG 399 (477)
Q Consensus 321 K~lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~ 399 (477)
|.+| +|+|+||+++++++++.+....+..+++.|+++++++.++|+. ++..++.++..+..++.+.+... +. .
T Consensus 231 K~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~--~~-~ 304 (376)
T 3ezs_A 231 KRSSAPGLRSGFIAGDSRLLEKYKAFRAYLGYTSANAIQKASEAAWLD---DRHAEFFRNIYANNLKLARKIFK--NT-L 304 (376)
T ss_dssp TTTTCGGGCCEEEEECHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHC---SHHHHHHHHHHHHHHHHHHHHST--TC-C
T ss_pred hccCCccceeEEEeeCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHhc--CC-C
Confidence 9997 6999999999999999888766667889999999999999874 23334444444444444444332 22 2
Q ss_pred eeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHH-cCceeeccCC------CCCEEEEeCCCCCcHHHHHHHHHHHHH
Q 011777 400 DVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRE-LGVLVGKGGL------HGNVFRIKPPMCFTKDDADFLVDALDY 472 (477)
Q Consensus 400 ~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~------~~~~iRi~p~~~~t~e~i~~~l~~l~~ 472 (477)
.+..|+++++++. ...++.+.|++ +||++.++.. ..+++||+++ .+++++++++++|++
T Consensus 305 -~~~~~~~~~~~~~-----------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~ 370 (376)
T 3ezs_A 305 -IYPYSFYVYLPVQ-----------NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALV--YDTPLLEKPLEIIET 370 (376)
T ss_dssp -CCSBSSEEEEECS-----------CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECC--SCHHHHHHHHHHHHH
T ss_pred -CCCcceEEEEECC-----------CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEc--CCHHHHHHHHHHHHH
Confidence 4566888888763 14567888887 8999988633 3479999876 499999999999999
Q ss_pred HHhh
Q 011777 473 SMSK 476 (477)
Q Consensus 473 ~l~~ 476 (477)
++++
T Consensus 371 ~l~~ 374 (376)
T 3ezs_A 371 YREN 374 (376)
T ss_dssp HHCC
T ss_pred HHHh
Confidence 9865
No 65
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=100.00 E-value=9.5e-32 Score=268.71 Aligned_cols=331 Identities=14% Similarity=0.058 Sum_probs=240.9
Q ss_pred CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCC-CCCEEEEeCChHHHHHHHHH
Q 011777 95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPG-NLKVVYFVNSGTEANELAML 173 (477)
Q Consensus 95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~-~~~~v~~~~sGseA~~~Al~ 173 (477)
.+.+|||.++. ++++ .+|+|.+++.+++.... ...|..+...+++++++++++. +.++|+|++||++|++.+++
T Consensus 29 ~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~--~~~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~ 103 (367)
T 3euc_A 29 SHGLVKLDAME--NPYR-LPPALRSELAARLGEVA--LNRYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLAL 103 (367)
T ss_dssp CTTCEECCSSC--CCCC-CCHHHHHHHHHHHHHHH--TTCSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHH
T ss_pred CCCeeEccCCC--CCCC-CCHHHHHHHHHHhhhhh--hhcCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHH
Confidence 46789998877 3454 68999999999987531 2234555678999999999876 56799999999999999998
Q ss_pred HHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCee
Q 011777 174 MARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVA 253 (477)
Q Consensus 174 ~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a 253 (477)
... .++++|++..++|+++.......+. .+..++... .+..| +++++++++. .+++
T Consensus 104 ~~~--~~gd~Vl~~~~~~~~~~~~~~~~g~-----------~~~~v~~~~----~~~~d----~~~l~~~l~~---~~~~ 159 (367)
T 3euc_A 104 AAA--RPGAKVMAPVPGFVMYAMSAQFAGL-----------EFVGVPLRA----DFTLD----RGAMLAAMAE---HQPA 159 (367)
T ss_dssp HTC--CTTCEEEEEESCSCCSCHHHHTTTC-----------EEEEEECCT----TSCCC----HHHHHHHHHH---HCCS
T ss_pred HHc--CCCCEEEEcCCCHHHHHHHHHHcCC-----------eEEEecCCC----CCCCC----HHHHHHHhhc---cCCC
Confidence 653 3567899999999988665443321 122222211 11112 5788888872 2567
Q ss_pred EEEecccCCCCCeeeCCchhHHHHHHHHHHh--CcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEE
Q 011777 254 GFIAETIQGVGGAVELAPGYLKLVYDIVRKA--GGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGA 331 (477)
Q Consensus 254 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~--gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~ 331 (477)
+|+++..++++|. ..+.+.+++|.++|++| |+++|+||+|++|+..+ .....+..+..+++.++||...+|+|+||
T Consensus 160 ~v~~~~~~nptG~-~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~~~G~r~G~ 237 (367)
T 3euc_A 160 IVYLAYPNNPTGN-LFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQES-WMSRLTDFGNLLVMRTVSKLGLAGIRLGY 237 (367)
T ss_dssp EEEEESSCTTTCC-CCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCC-SGGGGGTCTTEEEEEECCCTTSCSCCEEE
T ss_pred EEEEcCCCCCCCC-CCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccc-hHHHHhhCCCEEEEecchhhcccccCcee
Confidence 7777777888885 45778899999999999 99999999999987554 33344555666777899999336899999
Q ss_pred EEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEE
Q 011777 332 VVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGME 411 (477)
Q Consensus 332 v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~ 411 (477)
+++++++++.+.... .+++.|+++++++.++|+. +++.++.++....+++.+.+...+++.+...++.|.++++.
T Consensus 238 ~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~ 312 (367)
T 3euc_A 238 VAGDPQWLEQLDKVR--PPYNVNVLTEATALFALEH---VAVLDEQAAQLRAERSRVAEGMAAHGGVTVFPSAANFLLAR 312 (367)
T ss_dssp EEECHHHHHHHGGGC--CSSCCCHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHHTSTTCEECCCSSSEEEEE
T ss_pred eeeCHHHHHHHHHhC--CCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCCCCeEEEEE
Confidence 999999998887543 4678899999999999975 23333344444444444444444454444556678888877
Q ss_pred EeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC----CCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777 412 LVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL----HGNVFRIKPPMCFTKDDADFLVDALDYSMS 475 (477)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~----~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~ 475 (477)
+. ...++.+.|.++||++.++.. ..+++||+++ +++|+++++++|+++++
T Consensus 313 ~~-----------~~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 313 VP-----------DAAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS---TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp CS-----------CHHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred CC-----------CHHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC---CHHHHHHHHHHHHHHhc
Confidence 62 145688889999999988753 2479999754 89999999999999875
No 66
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=100.00 E-value=1.2e-32 Score=276.24 Aligned_cols=336 Identities=14% Similarity=0.046 Sum_probs=232.7
Q ss_pred CCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCC-hHHHHHHHHHHhhC----CCC--CC-EEEEeCCh
Q 011777 93 ENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLH-HAIADFAEALASKM----PGN--LK-VVYFVNSG 164 (477)
Q Consensus 93 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~-~~~~~l~~~La~~~----~~~--~~-~v~~~~sG 164 (477)
.+|+++|||.+|.. .+| .+|++.+++.+++++.. ...|.. ....++++.+++++ +.+ .+ +|+|++||
T Consensus 22 ~~g~~~idl~~~~~--~~~-~~~~v~~a~~~~~~~~~--~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~ 96 (376)
T 2dou_A 22 ERGVGLIDLSIGST--DLP-PPEAPLKALAEALNDPT--TYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGS 96 (376)
T ss_dssp HTTCCCEECSSCCC--CCC-CCHHHHHHHHHHTTCGG--GSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSH
T ss_pred ccCCCEEeccCCCC--CCC-CCHHHHHHHHHHHhCCC--cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCc
Confidence 46888999998875 577 48999999999886421 123443 24566667666655 543 34 89999999
Q ss_pred HHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHH
Q 011777 165 TEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHI 244 (477)
Q Consensus 165 seA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i 244 (477)
++|++.+++... .++++|++.+++||++.......+. .+..++.++ .+..| ++++++.+
T Consensus 97 ~~a~~~~~~~l~--~~gd~vl~~~p~y~~~~~~~~~~g~-----------~~~~~~~~~----~~~~d----~~~l~~~l 155 (376)
T 2dou_A 97 QEGLAHLLLALT--EPEDLLLLPEVAYPSYFGAARVASL-----------RTFLIPLRE----DGLAD----LKAVPEGV 155 (376)
T ss_dssp HHHHHHHHHHHC--CTTCEEEEESSCCHHHHHHHHHTTC-----------EEEEECBCT----TSSBC----GGGSCHHH
T ss_pred HHHHHHHHHHhc--CCCCEEEECCCCcHhHHHHHHHcCC-----------EEEEeeCCC----CCCCC----HHHHHHhh
Confidence 999999998763 2467899999999998665443321 111222111 11111 35666666
Q ss_pred hccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcc-ccc---cCCCcceeeec
Q 011777 245 DFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWG-FET---QGVIPDIVTMA 320 (477)
Q Consensus 245 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~-~~~---~gv~pDivt~s 320 (477)
+ +++++|+++..++++|.+ ++.+++++|.++|++||+++|+||+|++|.++| .... .+. .+...++.++|
T Consensus 156 ~----~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~s 229 (376)
T 2dou_A 156 W----REAKVLLLNYPNNPTGAV-ADWGYFEEALGLARKHGLWLIHDNPYVDQVYEG-EAPSPLALPGAKERVVELFSLS 229 (376)
T ss_dssp H----HHEEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSS-CCCCGGGSTTGGGTEEEEEEHH
T ss_pred c----cCceEEEECCCCCCcCcc-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCChhhcCCCCCcEEEEecch
Confidence 4 356777776557777754 678899999999999999999999999998766 3222 222 23445566899
Q ss_pred cccc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCce
Q 011777 321 KGIG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIG 399 (477)
Q Consensus 321 K~lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~ 399 (477)
|.++ +|+|+||+++++++++.+.......+++.|+++++++.++|+.. +++.++.++..+..++.+.+...++ +.
T Consensus 230 K~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~--~~ 305 (376)
T 2dou_A 230 KSYNLAGFRLGFALGSEEALARLERVKGVIDFNQYAGVLRMGVEALKTP--KEVVRGYARVYRERALGMAEALKGV--LS 305 (376)
T ss_dssp HHHTCGGGCCEEEEECHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHHHHTTT--SE
T ss_pred hhcCChhheeEEEecCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHHHHh--cC
Confidence 9998 69999999999999988876656667788999999999988753 3334444444444444444433333 22
Q ss_pred eeec-cceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777 400 DVRG-RGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYSM 474 (477)
Q Consensus 400 ~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~l 474 (477)
..++ .|+++++++... ....++.+.|+++||++.++..+ .+++||+++. +++++++++++|++++
T Consensus 306 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~~~--~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 306 LLPPRATMYLWGRLPEG--------VDDLEFGLRLVERGVALAPGRGFGPGGKGFVRIALVR--PLEELLEAAKRIREAL 375 (376)
T ss_dssp ECCCCBSSEEEEECCTT--------CCHHHHHHHHHHTTEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHTC
T ss_pred ccCCCeeEEEEEECCCC--------CCHHHHHHHHHHCCEEEcCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHHHh
Confidence 2333 466778876321 11356888999999999987433 4799998764 8999999999998865
No 67
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-32 Score=282.26 Aligned_cols=345 Identities=14% Similarity=0.069 Sum_probs=238.1
Q ss_pred CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhc--c-ccccccCChHHHHHHHHHHhhCC--CCCCEEEEeCChHHHH
Q 011777 94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLL--Q-HATTIYLHHAIADFAEALASKMP--GNLKVVYFVNSGTEAN 168 (477)
Q Consensus 94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~--~-~~~~~~~~~~~~~l~~~La~~~~--~~~~~v~~~~sGseA~ 168 (477)
.|+.+|||..|.+ .++ ++|.|.+++.+++++. . +....+..+.+.++++++.+.++ .+.++|++|+||++|+
T Consensus 55 ~~~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al 131 (447)
T 3b46_A 55 QGRELINLGQGFF--SYS-PPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGI 131 (447)
T ss_dssp TTSCCEECCCCSC--SSC-CCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHH
T ss_pred cCCCeEEccCCCC--CCC-CCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHH
Confidence 4668999998875 455 6899999999998751 1 11111223445666666655544 3346899999999999
Q ss_pred HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCC--------cCCCCCCCHHHHHHHH
Q 011777 169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDP--------YHGSFGSDAARYAQDL 240 (477)
Q Consensus 169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l 240 (477)
+.+++.+. .+++.|++.+++||++.......+.. +..++.... ....+..| +++|
T Consensus 132 ~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g~~-----------~~~v~~~~~~~~~~~~~~~~~~~~d----~~~l 194 (447)
T 3b46_A 132 LSCLMGLL--NAGDEVIVFEPFFDQYIPNIELCGGK-----------VVYVPINPPKELDQRNTRGEEWTID----FEQF 194 (447)
T ss_dssp HHHHHHHC--CTTCEEEEEESCCTTHHHHHHHTTCE-----------EEEEEEECCGGGGTSCBCSTTSEEC----HHHH
T ss_pred HHHHHHHc--CCCCEEEEeCCCchhHHHHHHHcCCE-----------EEEEeCCCccccccccccccCcccC----HHHH
Confidence 99999763 35688999999999876644332211 111111000 00011111 4677
Q ss_pred HHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcc---c--cccCCCcc
Q 011777 241 QDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWG---F--ETQGVIPD 315 (477)
Q Consensus 241 e~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~---~--~~~gv~pD 315 (477)
++.++ +++++|++++.+|++|.+ ++++++++|.++|++||++||+||+|++|.++| .... + +.++..++
T Consensus 195 ~~~l~----~~~~~v~l~~p~nptG~~-~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~~i~ 268 (447)
T 3b46_A 195 EKAIT----SKTKAVIINTPHNPIGKV-FTREELTTLGNICVKHNVVIISDEVYEHLYFTD-SFTRIATLSPEIGQLTLT 268 (447)
T ss_dssp HTTCC----TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CCCCGGGSCHHHHTTEEE
T ss_pred HHhhc----cCCeEEEEeCCCCCCCcc-cCHHHHHHHHHHHHHcCcEEEEeccchhcccCC-CCcCHHHcCCCCCCcEEE
Confidence 77664 467888888878888854 578999999999999999999999999988776 3222 2 13466777
Q ss_pred eeeeccccc-CccceEEEEe-CHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhh----HHHHHHHHHHHHHHHHH
Q 011777 316 IVTMAKGIG-NGLPLGAVVT-TPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKER----RQAHCADVGSHLLGRLR 389 (477)
Q Consensus 316 ivt~sK~lg-~G~pig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~----~~~~~~~~~~~l~~~L~ 389 (477)
+.++||.++ .|+|+||+++ ++++++.+....+..+++.++++++++.++|+....++ +.++++++.+++.+.|+
T Consensus 269 i~S~sK~~~~~G~riG~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 348 (447)
T 3b46_A 269 VGSAGKSFAATGWRIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFD 348 (447)
T ss_dssp EEEHHHHTTCTTSCCEEEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCchhcCCcchhhEEEEeCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999 6999999999 99999888765566788899999999999998764344 44455555556665555
Q ss_pred HHHHhCCCceeeeccceeEEEEEeeCCCCCCcc----------HHHHHHHHHHHH-HcCceeeccCCC---------CCE
Q 011777 390 TLQERHDIIGDVRGRGLMVGMELVTDRKEKTPA----------KAETAVLFEKLR-ELGVLVGKGGLH---------GNV 449 (477)
Q Consensus 390 ~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~----------~~~~~~~~~~l~-~~Gv~v~~~~~~---------~~~ 449 (477)
++ +.....+..|+++++++... ..|. .....++.+.|. ++||++.|+..+ .++
T Consensus 349 ~~----g~~~~~~~~g~~~~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~ 421 (447)
T 3b46_A 349 EL----GLPYTAPEGTYFVLVDFSKV---KIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENL 421 (447)
T ss_dssp HH----TCCEECCSBSSEEEEECTTC---CCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTE
T ss_pred HC----CCeecCCCeeEEEEEecccc---cCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCE
Confidence 54 33222344577888887421 0010 113456777776 589999887432 579
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHH
Q 011777 450 FRIKPPMCFTKDDADFLVDALDYS 473 (477)
Q Consensus 450 iRi~p~~~~t~e~i~~~l~~l~~~ 473 (477)
+||+++ .++++|++++++|++.
T Consensus 422 iRls~~--~~~e~l~~~~~~l~~~ 443 (447)
T 3b46_A 422 LRFAVC--KDDAYLENAVERLKLL 443 (447)
T ss_dssp EEEECC--SCHHHHHHHHHHGGGG
T ss_pred EEEEEe--CCHHHHHHHHHHHHHH
Confidence 999876 4899999999999873
No 68
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=100.00 E-value=6.4e-36 Score=301.96 Aligned_cols=359 Identities=12% Similarity=0.080 Sum_probs=242.5
Q ss_pred eeEEeeeccEEEeCCCC--EEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCC--CCC
Q 011777 80 LNIVEGKMQYLFDENGR--RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMP--GNL 155 (477)
Q Consensus 80 ~~~~~g~G~~~~d~dG~--~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~--~~~ 155 (477)
++-.+|+|+++||.+|+ .+|||..+.. .++ .+|++.+++.+++....+.......+.+.++++++.+..+ .+.
T Consensus 13 ~~~~~~~g~~~~d~~g~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~ 89 (392)
T 3b1d_A 13 APNRLSHHTYKWKETETDPQLLPAWIADM--DFE-VMPEVKQAIHDYAEQLVYGYTYASDELLQAVLDWEKSEHQYSFDK 89 (392)
Confidence 45568999999999999 9999987764 455 5889999999988653221111123344555555554443 445
Q ss_pred CEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcC-CCCCCCHH
Q 011777 156 KVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYH-GSFGSDAA 234 (477)
Q Consensus 156 ~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 234 (477)
++|++++||++|++.+++.+.. ++++|++..++||++.......+. ..+.+|.... +.|..
T Consensus 90 ~~v~~~~g~~~a~~~~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~g~~~~--- 151 (392)
T 3b1d_A 90 EDIVFVEGVVPAISIAIQAFTK--EGEAVLINSPVYPPFARSVRLNNR-------------KLVSNSLKEENGLFQI--- 151 (392)
Confidence 7899999999999999997643 567899999999998765543321 1111111000 00111
Q ss_pred HHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCC---Cccccc--
Q 011777 235 RYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSH---YWGFET-- 309 (477)
Q Consensus 235 ~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~---~~~~~~-- 309 (477)
.++++++.++ ..++++|+++..++++|. .++++++++|.++|++||+++|+||+|++|.++|.. ++.++.
T Consensus 152 -d~~~l~~~l~---~~~~~~v~~~~~~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~ 226 (392)
T 3b1d_A 152 -DFEQLENDIV---ENDVKLYLLCNPHNPGGR-VWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDF 226 (392)
Confidence 1366766664 135667777777777785 467788999999999999999999999999876621 222222
Q ss_pred cCCCcceeeeccccc-CccceEEEEeCH-HHHHhhcccccccCC-CCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Q 011777 310 QGVIPDIVTMAKGIG-NGLPLGAVVTTP-EIANVMAQKIQFNTF-GGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLG 386 (477)
Q Consensus 310 ~gv~pDivt~sK~lg-~G~pig~v~~~~-~~~~~~~~~~~~~t~-~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~ 386 (477)
.+..+++.++||+++ +|+|+||+++++ ++++.+.......++ +.|+++++++.++|+.. +++.+++++..+..++
T Consensus 227 ~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~ 304 (392)
T 3b1d_A 227 KDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYG--KPWLVALKAVLEENIQ 304 (392)
Confidence 455677889999998 799999999975 488888765554544 46899999999988742 3344444444444444
Q ss_pred HHHHHHHh-CCCceeeeccceeE-EEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC----CCEEEEeCCCCCc
Q 011777 387 RLRTLQER-HDIIGDVRGRGLMV-GMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH----GNVFRIKPPMCFT 459 (477)
Q Consensus 387 ~L~~l~~~-~~~~~~v~g~g~~~-~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t 459 (477)
.|.+...+ ++.+..+++.|.++ |+++... .....++.+.|+ ++||++.++..+ .+++||+ +..+
T Consensus 305 ~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~ 375 (392)
T 3b1d_A 305 FAVEYFAQEAPRLKVMKPQGTYLIWLDFSDY-------GLTDDALFTLLHDQAKVILNRGSDYGSEGELHARLN--IAAP 375 (392)
Confidence 44444333 33344455666655 5666321 112346778886 789999887433 3689996 4457
Q ss_pred HHHHHHHHHHHHHHHh
Q 011777 460 KDDADFLVDALDYSMS 475 (477)
Q Consensus 460 ~e~i~~~l~~l~~~l~ 475 (477)
+++|++++++|+++++
T Consensus 376 ~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 376 KSLVEEICKRIVCCLP 391 (392)
Confidence 8999999999998875
No 69
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=100.00 E-value=2e-32 Score=278.19 Aligned_cols=345 Identities=12% Similarity=0.056 Sum_probs=232.2
Q ss_pred CCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc---ccccccCChHHHHHHHHHHhhCC--CCC-CEEEEeCChHH
Q 011777 93 ENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ---HATTIYLHHAIADFAEALASKMP--GNL-KVVYFVNSGTE 166 (477)
Q Consensus 93 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~---~~~~~~~~~~~~~l~~~La~~~~--~~~-~~v~~~~sGse 166 (477)
.+|+++|||.+|.. ++| .+|.+.+++.+++++.. +....+..+.+..+++.+.+..+ .+. ++|++++||++
T Consensus 34 ~~g~~~idl~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~ 110 (412)
T 2x5d_A 34 RRGEDIIDLSMGNP--DGP-TPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKE 110 (412)
T ss_dssp HTTCCCEECSSCCC--CSC-CCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHH
T ss_pred hcCCCEEecCCCCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHH
Confidence 57889999998874 566 78999999998876531 11111122334444444444334 244 58999999999
Q ss_pred HHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhc
Q 011777 167 ANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF 246 (477)
Q Consensus 167 A~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~ 246 (477)
|++.+++.+. .+++.|++..++||++.......+ ...+.+|.... .+....++++++.++
T Consensus 111 a~~~~~~~~~--~~gd~Vl~~~p~~~~~~~~~~~~g-------------~~~~~~~~~~~----~~~~~d~~~l~~~i~- 170 (412)
T 2x5d_A 111 GLAHLMLATL--DHGDTILVPNPSYPIHIYGAVIAG-------------AQVRSVPLVPG----IDFFNELERAIRESI- 170 (412)
T ss_dssp HHHHHHHHHC--CTTCEEEEEESCCHHHHHHHHHHT-------------CEEEEEECSTT----SCHHHHHHHHHHTEE-
T ss_pred HHHHHHHHhC--CCCCEEEEcCCCchhHHHHHHHcC-------------CEEEEeecCCc----cCCCCCHHHHHHhcc-
Confidence 9999999763 356789999999999766544322 11111111100 011112466666664
Q ss_pred cCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccc----cCCCcceeeeccc
Q 011777 247 GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFET----QGVIPDIVTMAKG 322 (477)
Q Consensus 247 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~----~gv~pDivt~sK~ 322 (477)
.++++|++...++++|. .++.+++++|.++|++||+++|+||+|++|.++|.....+.. .+....+.++||.
T Consensus 171 ---~~~~~v~l~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~ 246 (412)
T 2x5d_A 171 ---PKPRMMILGFPSNPTAQ-CVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKS 246 (412)
T ss_dssp ---SCCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-C
T ss_pred ---cCceEEEECCCCCCCCC-cCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccc
Confidence 34556666444666775 467899999999999999999999999999876632222222 3444556689999
Q ss_pred cc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHhCCCce
Q 011777 323 IG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQERHDIIG 399 (477)
Q Consensus 323 lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~ 399 (477)
++ +|+|+||+++++++++.+.......+++.|+++++++.++|+..++ ++..++++++.+++.+.|+++ ...
T Consensus 247 ~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~--- 321 (412)
T 2x5d_A 247 YNMAGWRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREA--GWM--- 321 (412)
T ss_dssp CSCTTSCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHH--TCC---
T ss_pred cCCcccceEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC--CCE---
Confidence 99 7999999999999998887665666788999999999999985432 345666667777777777664 222
Q ss_pred eeecc-ceeEEEEEeeCCCCCCccHHHHHHHHHHHHH-cCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777 400 DVRGR-GLMVGMELVTDRKEKTPAKAETAVLFEKLRE-LGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYS 473 (477)
Q Consensus 400 ~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~ 473 (477)
..++. |+++++++.... . .....++.+.|++ +||++.++..+ .+++||+++. +++++++++++|.++
T Consensus 322 ~~~~~~g~~~~~~~~~~~----~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~~~l~~~l~~l~~~ 394 (412)
T 2x5d_A 322 VENPKASMYVWAKIPEPY----A-HLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE--NRDRLRQAVRGIKAM 394 (412)
T ss_dssp CCCCSBSSEEEEECCTTT----G-GGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHH
T ss_pred ecCCCeeeEEEEEcCCcc----C-CCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHHH
Confidence 22344 667787763110 0 0014567788765 69999987433 4799999875 899999999999998
Q ss_pred Hhh
Q 011777 474 MSK 476 (477)
Q Consensus 474 l~~ 476 (477)
+++
T Consensus 395 l~~ 397 (412)
T 2x5d_A 395 FRA 397 (412)
T ss_dssp HHH
T ss_pred HHh
Confidence 864
No 70
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=100.00 E-value=9.4e-32 Score=270.79 Aligned_cols=343 Identities=12% Similarity=0.046 Sum_probs=237.5
Q ss_pred CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc--ccccccCChHHHHHHHHHHhhCC--CCCCEEEEeCChHHHHH
Q 011777 94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ--HATTIYLHHAIADFAEALASKMP--GNLKVVYFVNSGTEANE 169 (477)
Q Consensus 94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~--~~~~~~~~~~~~~l~~~La~~~~--~~~~~v~~~~sGseA~~ 169 (477)
+|+.++||.+|.. .+| .+|.+.+++.++++... +....+..+.+..+++.+.+..+ .+.++|++++||++|++
T Consensus 28 ~g~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~ 104 (388)
T 1j32_A 28 EGIDVCSFSAGEP--DFN-TPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIF 104 (388)
T ss_dssp TTCCCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEECCCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHH
Confidence 6889999988875 466 58999999999886532 11111233445566666655433 34578999999999999
Q ss_pred HHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCC
Q 011777 170 LAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTS 249 (477)
Q Consensus 170 ~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~ 249 (477)
.+++.+. .+++.|++.+++||++....... |...+.+|......+..| .++|++.++
T Consensus 105 ~~~~~~~--~~gd~vl~~~~~~~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~l~---- 161 (388)
T 1j32_A 105 NLMLAMI--EPGDEVIIPAPFWVSYPEMVKLA-------------EGTPVILPTTVETQFKVS----PEQIRQAIT---- 161 (388)
T ss_dssp HHHHHHC--CTTCEEEEESSCCTHHHHHHHHT-------------TCEEEEECCCGGGTTCCC----HHHHHHHCC----
T ss_pred HHHHHhc--CCCCEEEEcCCCChhHHHHHHHc-------------CCEEEEecCCcccCCCCC----HHHHHHhcC----
Confidence 9999773 35678999999999875543222 112222222111112212 477888775
Q ss_pred CCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCC---Cccccc--cCCCcceeeeccccc
Q 011777 250 GKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSH---YWGFET--QGVIPDIVTMAKGIG 324 (477)
Q Consensus 250 ~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~---~~~~~~--~gv~pDivt~sK~lg 324 (477)
+++++|++++.++++|.+ ++++++++|.++|++||+++|+||+|++|.+.|.. +..++. .+..+++.++||.++
T Consensus 162 ~~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~ 240 (388)
T 1j32_A 162 PKTKLLVFNTPSNPTGMV-YTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYA 240 (388)
T ss_dssp TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTT
T ss_pred cCceEEEEeCCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccC
Confidence 367888877778888855 57889999999999999999999999999876622 122221 445667778999998
Q ss_pred -CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHhCCCceee
Q 011777 325 -NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQERHDIIGDV 401 (477)
Q Consensus 325 -~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v 401 (477)
.|+|+|++++++++++.+......++++.+++++.++.++|+..++ ++..++++++.+++.+.|++ .+.+..+
T Consensus 241 ~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~g~~~~ 316 (388)
T 1j32_A 241 MTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNA----MPGLECP 316 (388)
T ss_dssp CTTTCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHT----CTTCBCC
T ss_pred CcccceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhh----CCCCccc
Confidence 6899999999999998887666667888999999999999874321 33455556666666666544 3222222
Q ss_pred ecc-ceeEEEEEeeCCCCCCccHHHHHHHHHHHHH-cCceeeccCCC--CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 402 RGR-GLMVGMELVTDRKEKTPAKAETAVLFEKLRE-LGVLVGKGGLH--GNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 402 ~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~--~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
.+. |.++++.+... .....++.+.|++ +||.+.++..+ .+++||+++ ++++++++++++|++++++
T Consensus 317 ~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~i~~~~~~l~~~l~~ 386 (388)
T 1j32_A 317 KPDGAFYMFPSIAKT-------GRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA--TDLDTIKRGMERLEKFLHG 386 (388)
T ss_dssp CCCBTTEECCBCGGG-------TCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred CCCeeEEEEEecCCC-------CCCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 333 44555554210 0124567888876 79999987433 478999876 6899999999999998865
No 71
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=100.00 E-value=4.2e-32 Score=275.25 Aligned_cols=340 Identities=11% Similarity=0.060 Sum_probs=230.5
Q ss_pred CCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhc---cccccccCChHHHHHHHHHHhhCCCC--C-CEEEEeCChHH
Q 011777 93 ENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLL---QHATTIYLHHAIADFAEALASKMPGN--L-KVVYFVNSGTE 166 (477)
Q Consensus 93 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~---~~~~~~~~~~~~~~l~~~La~~~~~~--~-~~v~~~~sGse 166 (477)
..|+++|||.+|.. .+| .+|.|.+++.+++++. .+....+..+.+..+++.+.+..+.+ . ++|++++||++
T Consensus 44 ~~g~~~idl~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~ 120 (404)
T 2o1b_A 44 HGPLPLINMAVGIP--DGP-TPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKN 120 (404)
T ss_dssp CCSSCCEECCCCSC--SSC-CCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHH
T ss_pred cCCCCEEecCCcCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHH
Confidence 35788999998876 567 5899999999987542 11111122233444555544433543 2 68999999999
Q ss_pred HHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhc
Q 011777 167 ANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF 246 (477)
Q Consensus 167 A~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~ 246 (477)
|++.+++.+. .+++.|++.+++||++.......+. .+..++... ..+..| +++|++.++
T Consensus 121 al~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~g~-----------~~~~v~~~~---~~~~~d----~~~l~~~l~- 179 (404)
T 2o1b_A 121 GLVAVPTCVI--NPGDYVLLPDPGYTDYLAGVLLADG-----------KPVPLNLEP---PHYLPD----WSKVDSQII- 179 (404)
T ss_dssp HHHHHHHHHC--CTTCEEEEEESCCSSHHHHHHHTTC-----------EEEEEECCT---TTCCCC----GGGSCHHHH-
T ss_pred HHHHHHHHhc--CCCCEEEEcCCCchhHHHHHHHCCC-----------EEEEeccCc---ccCcCC----HHHHHHhhc-
Confidence 9999999763 2567899999999998765433221 111222111 111112 356666665
Q ss_pred cCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc-cc---cCCCcceeeeccc
Q 011777 247 GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF-ET---QGVIPDIVTMAKG 322 (477)
Q Consensus 247 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~-~~---~gv~pDivt~sK~ 322 (477)
.++++|+++..++++|.+ ++.+++++|.++|++||++||+||+|++|.++| ....+ .. .+..+.+.++||.
T Consensus 180 ---~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~ 254 (404)
T 2o1b_A 180 ---DKTKLIYLTYPNNPTGST-ATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDA-KNPSILASENGKDVAIEIYSLSKG 254 (404)
T ss_dssp ---HHEEEEEECSSCTTTCCC-CCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSS-CCCCGGGSTTHHHHEEEEEESTTT
T ss_pred ---cCceEEEEcCCCCCCCcc-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCChhhcCCCCCCEEEEEecchh
Confidence 356777777667777754 678999999999999999999999999987766 32222 11 2334556689999
Q ss_pred cc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHhCCCce
Q 011777 323 IG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQERHDIIG 399 (477)
Q Consensus 323 lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~ 399 (477)
++ +|+|+||+++++++++.+.......+++.|+++++++.++|+..++ ++..++++++.+++.+.|++ ++. .
T Consensus 255 ~g~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~-~ 329 (404)
T 2o1b_A 255 YNMSGFRVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAK----ADL-P 329 (404)
T ss_dssp TTCGGGCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH----TTC-C
T ss_pred ccCchhheEeEecCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh----cCC-e
Confidence 98 7999999999999998887665566788999999999999876411 23334444555555555544 332 2
Q ss_pred eeecc-ceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777 400 DVRGR-GLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYS 473 (477)
Q Consensus 400 ~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~ 473 (477)
..++. |+++++++... ....++.+.|+ ++||++.++..+ .+++||+++. +++++++++++|+++
T Consensus 330 ~~~~~~g~~~~~~~~~~--------~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~e~l~~~l~~l~~~ 399 (404)
T 2o1b_A 330 FVHAKGGIYVWLETPPG--------YDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL--DDQKLDEAAIRLTEL 399 (404)
T ss_dssp EECCCBSSEEEEECCTT--------CCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS--CTTHHHHHHHHHHGG
T ss_pred ecCCCcceEEEEeCCCC--------CCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC--CHHHHHHHHHHHHHH
Confidence 23333 56678776311 11346777776 579999987433 4799998875 789999999999988
Q ss_pred Hhh
Q 011777 474 MSK 476 (477)
Q Consensus 474 l~~ 476 (477)
+++
T Consensus 400 l~~ 402 (404)
T 2o1b_A 400 AYL 402 (404)
T ss_dssp GGG
T ss_pred HHh
Confidence 764
No 72
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=100.00 E-value=2.9e-31 Score=270.23 Aligned_cols=355 Identities=11% Similarity=0.024 Sum_probs=236.7
Q ss_pred CEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc----ccccccCChHHHHHHHHHHhhCCC--CC-CEEEEeCChHHHH
Q 011777 96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ----HATTIYLHHAIADFAEALASKMPG--NL-KVVYFVNSGTEAN 168 (477)
Q Consensus 96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~----~~~~~~~~~~~~~l~~~La~~~~~--~~-~~v~~~~sGseA~ 168 (477)
..+|||..|.. .++ .+|+|++++.+++.... +....+..+.+..+++.+.+.++. +. ++|++++||++|+
T Consensus 28 ~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~ 104 (422)
T 3fvs_A 28 HDVVNLGQGFP--DFP-PPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGAL 104 (422)
T ss_dssp SCCEECCCSSC--SSC-CCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHH
T ss_pred CCceEeCCCCC--CCC-CCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHH
Confidence 36789888774 343 68999999999987632 111112234566666666655432 33 5899999999999
Q ss_pred HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCC-----C---cCCCCCCCHHHHHHHH
Q 011777 169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPD-----P---YHGSFGSDAARYAQDL 240 (477)
Q Consensus 169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~l 240 (477)
+.+++.+. .+++.|++..++||++.......+.. +..++... . ....+..| ++++
T Consensus 105 ~~~~~~~~--~~gd~vl~~~p~~~~~~~~~~~~g~~-----------~~~~~~~~~~~~~G~~~~~~~~~~d----~~~l 167 (422)
T 3fvs_A 105 FTAFQALV--DEGDEVIIIEPFFDCYEPMTMMAGGR-----------PVFVSLKPGPIQNGELGSSSNWQLD----PMEL 167 (422)
T ss_dssp HHHHHHHC--CTTCEEEEEESCCTTHHHHHHHTTCE-----------EEEEECBCCCCCSSSCCBGGGSBCC----HHHH
T ss_pred HHHHHHHc--CCCCEEEEcCCCchhhHHHHHHcCCE-----------EEEEecccccccccccccccCCCCC----HHHH
Confidence 99999763 36678999999999976544433211 11111110 0 00011111 4677
Q ss_pred HHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccccc----CCCcce
Q 011777 241 QDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ----GVIPDI 316 (477)
Q Consensus 241 e~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~----gv~pDi 316 (477)
+++++ .++++|++++.+|++|.+ ++++++++|.++|++||+++|+||+|++|.++|.....+... +..+++
T Consensus 168 ~~~~~----~~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 242 (422)
T 3fvs_A 168 AGKFT----SRTKALVLNTPNNPLGKV-FSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTI 242 (422)
T ss_dssp HTTCC----TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEE
T ss_pred HhhcC----CCceEEEECCCCCCCCcC-CCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEE
Confidence 77664 467888888888888854 488899999999999999999999999998877333333222 333556
Q ss_pred eeeccccc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHh-----hchhhHHHHHHHHHHHHHHHHHH
Q 011777 317 VTMAKGIG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRV-----IDKERRQAHCADVGSHLLGRLRT 390 (477)
Q Consensus 317 vt~sK~lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~-----l~~~~~~~~~~~~~~~l~~~L~~ 390 (477)
.++||.+| +|+|+||+++++++++.+....+..+++.|+++++++.++|+. ...+++.++.++..+..++.+.+
T Consensus 243 ~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 322 (422)
T 3fvs_A 243 GSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIR 322 (422)
T ss_dssp EEHHHHHTCGGGCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred ecchhccCCccceEEEEEeCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 68999999 6999999999999998887666677889999999999999974 11233444444444444444444
Q ss_pred HHHhCCCceeeeccceeEEEEEeeCCCC-----CCccHHHHHHHHHHH-HHcCceeeccCCC---------CCEEEEeCC
Q 011777 391 LQERHDIIGDVRGRGLMVGMELVTDRKE-----KTPAKAETAVLFEKL-RELGVLVGKGGLH---------GNVFRIKPP 455 (477)
Q Consensus 391 l~~~~~~~~~v~g~g~~~~i~~~~~~~~-----~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~---------~~~iRi~p~ 455 (477)
...+++.....+..|+++++++...... .........++.+.+ .++||++.++..+ .+++||++.
T Consensus 323 ~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~ 402 (422)
T 3fvs_A 323 SLQSVGLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFV 402 (422)
T ss_dssp HHHTTTCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECC
T ss_pred HHHHcCCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEec
Confidence 4444444334455677888876421000 000000023555654 4579999987543 579999754
Q ss_pred CCCcHHHHHHHHHHHHHHHhhC
Q 011777 456 MCFTKDDADFLVDALDYSMSKL 477 (477)
Q Consensus 456 ~~~t~e~i~~~l~~l~~~l~~l 477 (477)
.++++|++++++|+++++++
T Consensus 403 --~~~e~i~~~l~~l~~~l~~l 422 (422)
T 3fvs_A 403 --KDEATLQAMDEKLRKWKVEL 422 (422)
T ss_dssp --CCHHHHHHHHHHHHHHHHCC
T ss_pred --CCHHHHHHHHHHHHHHHhhC
Confidence 59999999999999998764
No 73
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=100.00 E-value=1.2e-31 Score=270.25 Aligned_cols=341 Identities=14% Similarity=0.099 Sum_probs=232.7
Q ss_pred CEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccc--ccccCChHHHHHHHHHHhhCC--CCCCE-EEEeCChHHHHHH
Q 011777 96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA--TTIYLHHAIADFAEALASKMP--GNLKV-VYFVNSGTEANEL 170 (477)
Q Consensus 96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~--~~~~~~~~~~~l~~~La~~~~--~~~~~-v~~~~sGseA~~~ 170 (477)
..++||..+.. .+| .+|++.+++.+++++.... ...+..+.+..+++.+.+..+ .+.++ +++++||++|++.
T Consensus 26 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~ 102 (389)
T 1gd9_A 26 KDVISLGIGEP--DFD-TPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLM 102 (389)
T ss_dssp SSCEECCCCSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHH
T ss_pred cCeEecCCCCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHH
Confidence 35789888764 466 6899999999998763211 111223445555555555434 34567 9999999999999
Q ss_pred HHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCC
Q 011777 171 AMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG 250 (477)
Q Consensus 171 Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~ 250 (477)
+++.+. .+++.|++.+++||+........+. .+..++.. ....+..| .+++++.++ .
T Consensus 103 ~~~~~~--~~gd~vl~~~~~~~~~~~~~~~~g~-----------~~~~v~~~--~~~~~~~d----~~~l~~~l~----~ 159 (389)
T 1gd9_A 103 GLSAFL--KDGEEVLIPTPAFVSYAPAVILAGG-----------KPVEVPTY--EEDEFRLN----VDELKKYVT----D 159 (389)
T ss_dssp HHTTTC--CTTCEEEEEESCCTTHHHHHHHHTC-----------EEEEEECC--GGGTTCCC----HHHHHHHCC----T
T ss_pred HHHHhC--CCCCEEEEcCCCchhHHHHHHHCCC-----------EEEEeccC--CccCCCCC----HHHHHHhcC----c
Confidence 998652 3567899999999997654432211 11222211 10112112 478888775 3
Q ss_pred CeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccccc-CC-Ccc--eeeeccccc-C
Q 011777 251 KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ-GV-IPD--IVTMAKGIG-N 325 (477)
Q Consensus 251 ~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~-gv-~pD--ivt~sK~lg-~ 325 (477)
++++|++++.++++|.+ ++++++++|.++|++||+++|+||+|+++.++|....++..+ +. ..| +.++||.++ +
T Consensus 160 ~~~~v~~~~~~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 238 (389)
T 1gd9_A 160 KTRALIINSPCNPTGAV-LTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMT 238 (389)
T ss_dssp TEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCG
T ss_pred CceEEEEECCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCc
Confidence 57777777777878854 678899999999999999999999999998776213333222 21 234 457999998 6
Q ss_pred ccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch----hhHHHHHHHHHHHHHHHHHHHHHhCCCceee
Q 011777 326 GLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK----ERRQAHCADVGSHLLGRLRTLQERHDIIGDV 401 (477)
Q Consensus 326 G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~----~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v 401 (477)
|+|+|++++++++++.+.......+++.|+++++++.++|+.... ++..++++++.+++.+.|+++ +.....
T Consensus 239 G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~ 314 (389)
T 1gd9_A 239 GWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM----GLPTVK 314 (389)
T ss_dssp GGCCEEEECCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCCCCC
T ss_pred ccceEEEEECHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc----CCeecC
Confidence 899999999999998887666667788999999999999876443 233445555556666655553 321112
Q ss_pred eccceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 402 RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 402 ~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
+..|+++++++... .....++.+.|+ ++||.+.++..+ .+++||+++. +++++++++++|++++++
T Consensus 315 ~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~--~~~~i~~~l~~l~~~~~~ 385 (389)
T 1gd9_A 315 PKGAFYIFPRIRDT-------GLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT--AYEKLEEAMDRMERVLKE 385 (389)
T ss_dssp CCBTTEECCBCGGG-------TCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred CCeeeEEEEeccCC-------CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 22355666665310 012456888887 899999987432 4689998764 899999999999998864
No 74
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=100.00 E-value=1.8e-31 Score=267.01 Aligned_cols=326 Identities=12% Similarity=0.050 Sum_probs=231.1
Q ss_pred CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccc--ccccCChHHHHHHHHHHhhCC--CCCCEEEEeCChHHHHH
Q 011777 94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA--TTIYLHHAIADFAEALASKMP--GNLKVVYFVNSGTEANE 169 (477)
Q Consensus 94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~--~~~~~~~~~~~l~~~La~~~~--~~~~~v~~~~sGseA~~ 169 (477)
+|+.++||.++.. .+|+ +|++.+++.++++..... ...+..+.+..+++.+.+..+ .+.++|++++||++|++
T Consensus 27 ~g~~~i~l~~~~~--~~~~-~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~ 103 (370)
T 2z61_A 27 EGKKVIHLEIGEP--DFNT-PKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLF 103 (370)
T ss_dssp TTCCCEECCCCSC--SSCC-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHH
T ss_pred cCCCEEEccCCCC--CCCC-CHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHH
Confidence 4788999988775 5776 799999999998753211 111223445556665554432 45578999999999999
Q ss_pred HHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCC
Q 011777 170 LAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTS 249 (477)
Q Consensus 170 ~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~ 249 (477)
.+++.+. .++++|++.+++||+........ |...+.+| .+ .++|++.++
T Consensus 104 ~~~~~~~--~~gd~vl~~~p~~~~~~~~~~~~-------------g~~~~~v~------~d------~~~l~~~l~---- 152 (370)
T 2z61_A 104 FALSSII--DDGDEVLIQNPCYPCYKNFIRFL-------------GAKPVFCD------FT------VESLEEALS---- 152 (370)
T ss_dssp HHHHHHC--CTTCEEEEESSCCTHHHHHHHHT-------------TCEEEEEC------SS------HHHHHHHCC----
T ss_pred HHHHHhc--CCCCEEEEeCCCchhHHHHHHHc-------------CCEEEEeC------CC------HHHHHHhcc----
Confidence 9999763 35678999999999876554332 22222222 11 478888775
Q ss_pred CCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccccc----CCCcceeeeccccc-
Q 011777 250 GKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ----GVIPDIVTMAKGIG- 324 (477)
Q Consensus 250 ~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~----gv~pDivt~sK~lg- 324 (477)
+++++|++++.++++|.+.+ ++ |.++|++||+++|+||+|+++.++| ....+..+ +....+.++||.++
T Consensus 153 ~~~~~v~~~~p~nptG~~~~----~~-l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~~~ 226 (370)
T 2z61_A 153 DKTKAIIINSPSNPLGEVID----RE-IYEFAYENIPYIISDEIYNGLVYEG-KCYSAIEFDENLEKTILINGFSKLYAM 226 (370)
T ss_dssp SSEEEEEEESSCTTTCCCCC----HH-HHHHHHHHCSEEEEECTTTTCBSSS-CCCCGGGTCTTCSSEEEEEESTTTTTC
T ss_pred cCceEEEEcCCCCCcCcccC----HH-HHHHHHHcCCEEEEEcchhhcccCC-CCcCHHHccCCCCcEEEEecChhccCC
Confidence 36777788777888887665 44 9999999999999999999987766 43333222 33333557999998
Q ss_pred CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHh-hch--hhHHHHHHHHHHHHHHHHHHHHHhCCCceee
Q 011777 325 NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRV-IDK--ERRQAHCADVGSHLLGRLRTLQERHDIIGDV 401 (477)
Q Consensus 325 ~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~-l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v 401 (477)
+|+|+|++++++++++.+....+..+++.|+++++++.++|+. .++ ++..++++++.+++.+.|+++ +.....
T Consensus 227 ~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~ 302 (370)
T 2z61_A 227 TGWRIGYVISNDEIIEAILKLQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF----GWEVNN 302 (370)
T ss_dssp GGGCCEEEECCHHHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCBCCC
T ss_pred ccceEEEEEECHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc----CCeecC
Confidence 6999999999999998887666667788999999999888865 221 345566666677777776654 221111
Q ss_pred eccceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777 402 RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYSMS 475 (477)
Q Consensus 402 ~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~l~ 475 (477)
...|+++++++.. ...++.+.|+ ++||.+.++..+ .+++||+++ ++++++++++++|+++++
T Consensus 303 ~~~~~~~~~~~~~----------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~--~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 303 PIGAYYVFPNIGE----------DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYA--NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp CCBTTEECCBCSS----------CHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred CCcceEEEEecCC----------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 2235666666521 1456788887 789999887432 468999887 699999999999999875
No 75
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=1.8e-31 Score=269.11 Aligned_cols=338 Identities=13% Similarity=0.099 Sum_probs=238.6
Q ss_pred CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccc--ccccCChHHHHHHHHHHhhCC--CCCCEEEEeCChHHHHH
Q 011777 94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA--TTIYLHHAIADFAEALASKMP--GNLKVVYFVNSGTEANE 169 (477)
Q Consensus 94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~--~~~~~~~~~~~l~~~La~~~~--~~~~~v~~~~sGseA~~ 169 (477)
.|+.++||.++.+ .+|+ +|.+.+++.++++..... ...+..+.+..+++.+.+..+ .+.+++++++||++|++
T Consensus 39 ~g~~~i~l~~~~~--~~~~-~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~ 115 (389)
T 1o4s_A 39 KGEDVINLTAGEP--DFPT-PEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALF 115 (389)
T ss_dssp TTCCCEECCCSSC--SSCC-CHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEEccCCCC--CCCC-CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHH
Confidence 5788999988775 4675 799999999998753211 111223344555555544323 24578999999999999
Q ss_pred HHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCC
Q 011777 170 LAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTS 249 (477)
Q Consensus 170 ~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~ 249 (477)
.+++.+. .+++.|++.+++|+++....... |...+.+|......+..| +++|+++++
T Consensus 116 ~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~l~---- 172 (389)
T 1o4s_A 116 NAFMALL--DPGDEVIVFSPVWVSYIPQIILA-------------GGTVNVVETFMSKNFQPS----LEEVEGLLV---- 172 (389)
T ss_dssp HHHHHHC--CTTCEEEEEESCCTTHHHHHHHT-------------TCEEEEEECCGGGTTCCC----HHHHHHTCC----
T ss_pred HHHHHhC--CCCCEEEEcCCCchhHHHHHHHc-------------CCEEEEEecCCccCCCCC----HHHHHHhcc----
Confidence 9999763 35678999999999876544322 112222221110112112 477887775
Q ss_pred CCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccc----cCCCcceeeeccccc-
Q 011777 250 GKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFET----QGVIPDIVTMAKGIG- 324 (477)
Q Consensus 250 ~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~----~gv~pDivt~sK~lg- 324 (477)
.++++|++++.++++|. .++++++++|.++|++||+++|+||+|++|.+.| ....+.. .+....+.++||.++
T Consensus 173 ~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~~~ 250 (389)
T 1o4s_A 173 GKTKAVLINSPNNPTGV-VYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTD-EFTSILDVSEGFDRIVYINGFSKSHSM 250 (389)
T ss_dssp TTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSS-CCCCHHHHCSSSTTEEEEEESTTTTTC
T ss_pred cCceEEEEcCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEEccccccccCC-CCCCHhhcCCCCCcEEEEeechhhcCC
Confidence 35777887777788885 4578899999999999999999999999987766 3333322 233334557999998
Q ss_pred CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeecc
Q 011777 325 NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGR 404 (477)
Q Consensus 325 ~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~ 404 (477)
+|+|+|++++++++++.+......++++.+++++.++.++|+.. .+++.++++++.+++.+.|+++ ..... ....
T Consensus 251 ~G~r~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~l~~~L~~~--g~~~~--~~~~ 325 (389)
T 1o4s_A 251 TGWRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVD-NSYMVQTFKERKNFVVERLKKM--GVKFV--EPEG 325 (389)
T ss_dssp GGGCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHHT--TCCCC--CCSB
T ss_pred cccceEEEEeCHHHHHHHHHHhhhcccCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHhc--CCeee--cCCc
Confidence 68999999999999988876666667888999999988888653 4567778888888888888775 23222 1223
Q ss_pred ceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC--CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 405 GLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH--GNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 405 g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~--~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
|.++++.+. ....++.+.|+ ++||.+.++..+ .+++||+++ .+++++++++++|.+++++
T Consensus 326 ~~~~~~~~~----------~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~--~~~~~l~~~l~~l~~~l~~ 388 (389)
T 1o4s_A 326 AFYLFFKVR----------GDDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFA--TSIERLTEALDRIEDFLNS 388 (389)
T ss_dssp SSEEEEECS----------SCHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC--SCHHHHHHHHHHHHHHHTC
T ss_pred ceEEEEeCC----------CCHHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEe--CCHHHHHHHHHHHHHHHhc
Confidence 566677652 01356788887 889999887433 369999877 4899999999999998864
No 76
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=100.00 E-value=9.4e-32 Score=270.24 Aligned_cols=329 Identities=17% Similarity=0.135 Sum_probs=234.7
Q ss_pred EEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCCh-HHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHH
Q 011777 98 YLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHH-AIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMAR 176 (477)
Q Consensus 98 ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~-~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar 176 (477)
++||..|.. .++ .+|.+.+++.+++++. ..|... ...++++.|+++++.+.+++++++||++|++.+++.+.
T Consensus 27 ~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~ 99 (381)
T 1v2d_A 27 AVNLGQGFP--SNP-PPPFLLEAVRRALGRQ----DQYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLV 99 (381)
T ss_dssp CEECCCCSC--SSC-CCHHHHHHHHHHTTTS----CSCCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC
T ss_pred eEEecCCCC--CCC-CCHHHHHHHHHHHHHh----cCCCCCCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhC
Confidence 789988765 455 6899999999988751 123332 46789999999887766789999999999999999773
Q ss_pred hccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCC-CcCCCCCCCHHHHHHHHHHHHhccCCCCeeEE
Q 011777 177 LSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPD-PYHGSFGSDAARYAQDLQDHIDFGTSGKVAGF 255 (477)
Q Consensus 177 ~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~v 255 (477)
.++++|++.+++||++....... +. .+..++... +.. +..| ++++++.++ +++++|
T Consensus 100 --~~gd~Vl~~~~~~~~~~~~~~~~-g~----------~~~~v~~~~~~~~--~~~d----~~~l~~~l~----~~~~~v 156 (381)
T 1v2d_A 100 --GPGDEVVVLEPFFDVYLPDAFLA-GA----------KARLVRLDLTPEG--FRLD----LSALEKALT----PRTRAL 156 (381)
T ss_dssp --CTTCEEEEEESCCTTHHHHHHHT-TC----------EEEEEECEEETTE--EECC----HHHHHTTCC----TTEEEE
T ss_pred --CCCCEEEEcCCCchhHHHHHHHc-CC----------EEEEEeCCCCCcc--CCcC----HHHHHHhcC----cCCEEE
Confidence 46788999999999976533221 11 112222110 000 1111 467777664 467888
Q ss_pred EecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccc--ccCCCcceeeeccccc-CccceEEE
Q 011777 256 IAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFE--TQGVIPDIVTMAKGIG-NGLPLGAV 332 (477)
Q Consensus 256 i~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~--~~gv~pDivt~sK~lg-~G~pig~v 332 (477)
+++++++++|.+ ++++++++|.++|++||+++|+||+|++|.+ |.....+. ..+..+++.++||.++ .|+|+|++
T Consensus 157 ~~~~~~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~ 234 (381)
T 1v2d_A 157 LLNTPMNPTGLV-FGERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREFAPERTFTVGSAGKRLEATGYRVGWI 234 (381)
T ss_dssp EEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEE
T ss_pred EECCCCCCCCCc-cCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHhcCCCEEEEeechhhcCCcccceEEE
Confidence 888888888854 5778999999999999999999999998855 31111221 3567777889999998 68999999
Q ss_pred EeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhc--h--hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeE
Q 011777 333 VTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID--K--ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMV 408 (477)
Q Consensus 333 ~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~--~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~ 408 (477)
++++++++.+....+..+++.++++++++.++|+... + ++..++++++.+++.+.|++. +........|+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~ 310 (381)
T 1v2d_A 235 VGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM----GLRVYVPEGTYFL 310 (381)
T ss_dssp ECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT----TCCEECCSBSSEE
T ss_pred EeCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC----CCEecCCCcceEE
Confidence 9999998888765555678889999999999998652 2 345566666777777776653 2211112236677
Q ss_pred EEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC------CCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 409 GMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL------HGNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 409 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~------~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
++++.. . + +.+.|.++||++.++.. ..+++||+++. +++++++++++|++++++
T Consensus 311 ~~~~~~------~-----~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~ 370 (381)
T 1v2d_A 311 MAELPG------W-----D-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK--TEEELHLALERLGRVVNS 370 (381)
T ss_dssp EEECTT------C-----C-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS--CHHHHHHHHHHHHHHC--
T ss_pred EEecCh------H-----h-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC--CHHHHHHHHHHHHHHHhh
Confidence 776621 1 1 56677889999988642 24799999876 899999999999988754
No 77
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=100.00 E-value=5.2e-31 Score=269.18 Aligned_cols=350 Identities=15% Similarity=0.078 Sum_probs=239.3
Q ss_pred EeCCCCEEEeecCCcccc-cCCCCCHHHHHHHHHHHhhcccccccc-CChHHHHHHHHHHhhCC-----CCCCEEEEeCC
Q 011777 91 FDENGRRYLDAFAGIVTV-SCGHCHPDVLNAIFEQSKLLQHATTIY-LHHAIADFAEALASKMP-----GNLKVVYFVNS 163 (477)
Q Consensus 91 ~d~dG~~ylD~~~g~~~~-~lGh~~p~v~~Av~~~l~~~~~~~~~~-~~~~~~~l~~~La~~~~-----~~~~~v~~~~s 163 (477)
.+.+|+.+|||..|.... +-.+.+|+|.+|+.++++... ...| ......++++.+++++. .+.++|++|+|
T Consensus 49 ~~~~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~--~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g 126 (427)
T 3dyd_A 49 KPNPNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGK--YNGYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTSG 126 (427)
T ss_dssp CCCTTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCC--SSSCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEESS
T ss_pred cccCCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCc--CCCCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEecC
Confidence 345788999999888532 123578999999999987632 1123 23445677788887765 45678999999
Q ss_pred hHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHH
Q 011777 164 GTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDH 243 (477)
Q Consensus 164 GseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~ 243 (477)
|++|++.+++.+.. +++.|++.+++|+++.......+. ....++......+..| ++++++.
T Consensus 127 ~t~al~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~d----~~~l~~~ 187 (427)
T 3dyd_A 127 CSQAIDLCLAVLAN--PGQNILVPRPGFSLYKTLAESMGI-------------EVKLYNLLPEKSWEID----LKQLEYL 187 (427)
T ss_dssp HHHHHHHHHHHHCC--TTCEEEEEESCCTHHHHHHHHTTC-------------EEEEEEEEGGGTTEEC----HHHHHSS
T ss_pred cHHHHHHHHHHhcC--CCCEEEEcCCCchhHHHHHHHcCC-------------EEEEEecccccCCCCC----HHHHHHH
Confidence 99999999998743 678899999999987655443321 1111111110111111 4667766
Q ss_pred HhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCccee---eec
Q 011777 244 IDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV---TMA 320 (477)
Q Consensus 244 i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv---t~s 320 (477)
++ .++++|++...+|++|. .++++++++|.++|++||+++|+||+|++|+++|..+..+...+..++++ +||
T Consensus 188 l~----~~~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~s 262 (427)
T 3dyd_A 188 ID----EKTACLIVNNPSNPCGS-VFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLA 262 (427)
T ss_dssp CC----TTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEEST
T ss_pred hc----cCCCEEEEECCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeecc
Confidence 64 24555555555777885 56888999999999999999999999999998884344555555566666 899
Q ss_pred cccc-CccceEEEEeC-------HHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHH
Q 011777 321 KGIG-NGLPLGAVVTT-------PEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLR 389 (477)
Q Consensus 321 K~lg-~G~pig~v~~~-------~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~ 389 (477)
|.++ .|+|+||++++ +++++.+..... .+++.|+++++++.++|+.... ++..++++++.+++.+.|+
T Consensus 263 K~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~ 341 (427)
T 3dyd_A 263 KRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQ-RILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALA 341 (427)
T ss_dssp TTSSCGGGCCEEEEEECSTTSSHHHHHHHHHHHHH-HHCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcCcceEEEEecCcchhhHHHHHHHHHHHHh-ccCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9987 58999999987 467776654322 3678999999999999985332 2334445555555555554
Q ss_pred HHHHhCCCceee-eccceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC--CCEEEEeCCCCCcHHHHHH
Q 011777 390 TLQERHDIIGDV-RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH--GNVFRIKPPMCFTKDDADF 465 (477)
Q Consensus 390 ~l~~~~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~--~~~iRi~p~~~~t~e~i~~ 465 (477)
+ ++.+..+ +..|+++++.+.... .|......++.+.|+ ++||++.++..+ .+++||+. .+++++|++
T Consensus 342 ~----~~g~~~~~p~~g~~~~~~l~~~~---~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~--~~~~e~i~~ 412 (427)
T 3dyd_A 342 A----IPGLRPVRPSGAMYLMVGIEMEH---FPEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVI--TVPEVMMLE 412 (427)
T ss_dssp H----STTEEEECCSBTTEEEEEECGGG---CTTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEES--CSCHHHHHH
T ss_pred c----CCCceecCCCeeEEEEEecCHhh---cCCCCCHHHHHHHHHHHCCEEEECCcccCCCCeEEEEE--CCCHHHHHH
Confidence 4 4444444 344667777774211 111112345677774 789999987433 47999975 479999999
Q ss_pred HHHHHHHHHhh
Q 011777 466 LVDALDYSMSK 476 (477)
Q Consensus 466 ~l~~l~~~l~~ 476 (477)
++++|.+++++
T Consensus 413 ~l~~l~~~l~~ 423 (427)
T 3dyd_A 413 ACSRIQEFCEQ 423 (427)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998864
No 78
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=100.00 E-value=1.1e-31 Score=274.77 Aligned_cols=355 Identities=13% Similarity=0.113 Sum_probs=233.4
Q ss_pred EeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccc---------cccCC-hHHHHHHHHHHhhCC--------
Q 011777 91 FDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHAT---------TIYLH-HAIADFAEALASKMP-------- 152 (477)
Q Consensus 91 ~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~---------~~~~~-~~~~~l~~~La~~~~-------- 152 (477)
||.++|.+.++..|...++++ ++.+.+++.++.....+.. ..|.. ....+|++.|++++.
T Consensus 31 y~~~~~p~~~i~lg~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~ 108 (435)
T 3piu_A 31 YHEVHNTNGIIQMGLAENQLC--FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVT 108 (435)
T ss_dssp CBTTTBTTSBEECSSCCCCSS--HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSC
T ss_pred CCcccCCCCeEEecccccccc--HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCC
Confidence 788998888888888777775 6888888887665432210 11222 223455555555543
Q ss_pred CCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCC
Q 011777 153 GNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSD 232 (477)
Q Consensus 153 ~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (477)
.+.++|+|++||++|++.+++.++. +++.|++.+++|++......... |...+.++......+..|
T Consensus 109 ~~~~~v~~~~gg~~a~~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~~------------g~~~~~~~~~~~~~~~~d 174 (435)
T 3piu_A 109 FDPNHLVLTAGATSANETFIFCLAD--PGEAVLIPTPYYPGFDRDLKWRT------------GVEIVPIHCTSSNGFQIT 174 (435)
T ss_dssp CCGGGEEEEEHHHHHHHHHHHHHCC--TTCEEEEEESCCTTHHHHTTTTT------------CCEEEEEECCGGGTSCCC
T ss_pred CCHHHEEEcCChHHHHHHHHHHhcC--CCCeEEECCCccccHHHHHHHhc------------CCEEEEeeCCCccCCcCC
Confidence 4467899999999999999997643 56789999999988765433122 222222222211122222
Q ss_pred HHHHHHHHHHHHhcc--CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccccc
Q 011777 233 AARYAQDLQDHIDFG--TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ 310 (477)
Q Consensus 233 ~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~ 310 (477)
+++|+++++.. ...++++|++++.++++|. .++.+.+++|.++|++||++||+||+|++++++|..+......
T Consensus 175 ----~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~ 249 (435)
T 3piu_A 175 ----ETALEEAYQEAEKRNLRVKGVLVTNPSNPLGT-TMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEV 249 (435)
T ss_dssp ----HHHHHHHHHHHHHTTCCEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHH
T ss_pred ----HHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHh
Confidence 47788777631 2236788888877788885 5578889999999999999999999999987777322222111
Q ss_pred C----CC-----cc----eeeeccccc-CccceEEEEe-CHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch-h---
Q 011777 311 G----VI-----PD----IVTMAKGIG-NGLPLGAVVT-TPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK-E--- 371 (477)
Q Consensus 311 g----v~-----pD----ivt~sK~lg-~G~pig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~-~--- 371 (477)
. +. +| +.+|||++| +|+|+||+++ ++++.+.+.. ...+++.++++++++.++++..+. +
T Consensus 250 ~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 327 (435)
T 3piu_A 250 LKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK--MSSFGLVSSQTQHLLSAMLSDKKLTKNYI 327 (435)
T ss_dssp HHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHH--HGGGSCCCHHHHHHHHHHHHCHHHHHHHH
T ss_pred ccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHH--HhhcCCCCHHHHHHHHHHhcChHHHHHHH
Confidence 1 11 33 557999999 7999999999 5677776653 234556788999888888864321 1
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHhCCCceeeecc-ceeEEEEEeeCCCCCCccHHHHHHHHHHHHHc-CceeeccCC---
Q 011777 372 -RRQAHCADVGSHLLGRLRTLQERHDIIGDVRGR-GLMVGMELVTDRKEKTPAKAETAVLFEKLREL-GVLVGKGGL--- 445 (477)
Q Consensus 372 -~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~--- 445 (477)
+..++++++.+++++.|+ +.++ ..+++. |+++++++..... .+......++.+.|+++ ||++.++..
T Consensus 328 ~~~~~~~~~~~~~l~~~L~----~~g~-~~~~~~~g~~~~~~l~~~~~--~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~ 400 (435)
T 3piu_A 328 AENHKRLKQRQKKLVSGLQ----KSGI-SCLNGNAGLFCWVDMRHLLR--SNTFEAEMELWKKIVYEVHLNISPGSSCHC 400 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHH----TTTC-EECCCCSSSEEEEECGGGSS--SSSHHHHHHHHHHHHHTSCEECEEGGGGTC
T ss_pred HHHHHHHHHHHHHHHHHHH----hcCC-cccCCCeeEEEEEEcccccc--cCCchhHHHHHHHHHHHCCEEEeCCcccCC
Confidence 223334444444444443 3332 333444 4888888743211 11222345778888777 999998643
Q ss_pred -CCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 446 -HGNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 446 -~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
..+++||+++.. ++++|++++++|++++++
T Consensus 401 ~~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~~ 431 (435)
T 3piu_A 401 TEPGWFRVCFANL-PERTLDLAMQRLKAFVGE 431 (435)
T ss_dssp SSTTEEEEECSSS-CHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeeCC-CHHHHHHHHHHHHHHHHH
Confidence 257999998665 999999999999998864
No 79
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=100.00 E-value=5.4e-31 Score=262.83 Aligned_cols=326 Identities=13% Similarity=0.092 Sum_probs=229.1
Q ss_pred CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHH
Q 011777 95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLM 174 (477)
Q Consensus 95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ 174 (477)
++.+|||.++.. +++ .+|+|.+++.++++.. ..|+.+...+++++++++++.+.++|+|++||++|++.+++.
T Consensus 31 ~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~ 103 (363)
T 3ffh_A 31 LTKITKLSSNEN--PLG-TSKKVAAIQANSSVET----EIYPDGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRV 103 (363)
T ss_dssp CSCCEECSSCSC--TTC-CCHHHHHHHHTCBSCC----CBC----CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHH
T ss_pred CCceEEccCCCC--CCC-CCHHHHHHHHHHHHHh----hcCCCcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHH
Confidence 357899988754 455 6899999998866532 234455567899999999877778999999999999999987
Q ss_pred HHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeE
Q 011777 175 ARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAG 254 (477)
Q Consensus 175 ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~ 254 (477)
.. .++++|++.+++|+++.......+. .+..++.. ....++ ++++++.++ +++++
T Consensus 104 ~~--~~gd~vl~~~~~~~~~~~~~~~~g~-----------~~~~v~~~--~~~~~d------~~~l~~~i~----~~~~~ 158 (363)
T 3ffh_A 104 LL--DTTTNTVMATPTFVQYRQNALIEGA-----------EVREIPLL--QDGEHD------LEGMLNAID----EKTTI 158 (363)
T ss_dssp HC--STTCEEEEEESSCHHHHHHHHHHTC-----------EEEEEECC--TTSCCC------HHHHHHHCC----TTEEE
T ss_pred Hc--cCCCEEEEcCCChHHHHHHHHHcCC-----------EEEEecCC--CCCCcC------HHHHHHhcc----cCCCE
Confidence 63 3667899999999987655433321 12222221 111122 577888775 46788
Q ss_pred EEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcc----eeeeccccc-Cccce
Q 011777 255 FIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPD----IVTMAKGIG-NGLPL 329 (477)
Q Consensus 255 vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pD----ivt~sK~lg-~G~pi 329 (477)
|+++..++++|.+. +.+.+.+|.+.|++ |+++|+||+|++|++ | ...........+| +.++||.+| +|+|+
T Consensus 159 v~~~~p~nptG~~~-~~~~l~~l~~~~~~-~~~li~De~~~~~~~-~-~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~ 234 (363)
T 3ffh_A 159 VWICNPNNPTGNYI-ELADIQAFLDRVPS-DVLVVLDEAYIEYVT-P-QPEKHEKLVRTYKNLIITRTFSKIYGLASARV 234 (363)
T ss_dssp EEEESSCTTTCCCC-CHHHHHHHHTTSCT-TSEEEEECTTGGGCS-S-CCCCCGGGGGTCTTEEEEEESSSTTCCSSCCC
T ss_pred EEEeCCCCCcCCCc-CHHHHHHHHHhCCC-CcEEEEeCchHhhcC-c-cccCHHHHhhcCCCEEEEeechhhhcCchhce
Confidence 88887788888655 55556666666666 999999999999887 5 3333322211223 557999999 79999
Q ss_pred EEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEE
Q 011777 330 GAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVG 409 (477)
Q Consensus 330 g~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~ 409 (477)
|++++++++++.+.... .+++.|+++++++.++|+.. ++.++.++....+++.+.+...++..+...++.|.+++
T Consensus 235 G~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~ 309 (363)
T 3ffh_A 235 GYGIADKEIIRQLNIVR--PPFNTTSIGQKLAIEAIKDQ---AFIGECRTSNANGIKQYEAFAKRFEKVKLYPANGNFVL 309 (363)
T ss_dssp EEEEECHHHHHHHHHTC--CSCCCBHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCSSEEE
T ss_pred eeeecCHHHHHHHHHhC--CCCCCCHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHHHhhCCCceECCCCCeEEE
Confidence 99999999998887654 37889999999999999732 33344444444444444444444333445567788888
Q ss_pred EEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC--CCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777 410 MELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH--GNVFRIKPPMCFTKDDADFLVDALDYSM 474 (477)
Q Consensus 410 i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~p~~~~t~e~i~~~l~~l~~~l 474 (477)
+++.. ...++.+.|.++||.+.++..+ .+++||+++ +++|+++++++|++++
T Consensus 310 ~~~~~----------~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l 363 (363)
T 3ffh_A 310 IDLGI----------EAGTIFSYLEKNGYITRSGAALGFPTAVRITIG---KEEDNSAVIALLEKLL 363 (363)
T ss_dssp EECSS----------CHHHHHHHHHHTTEECEETTTTTCTTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred EECCC----------CHHHHHHHHHHCCeEEEeCccCCCCCeEEEECC---CHHHHHHHHHHHHHhC
Confidence 87631 2457888999999999987543 579999865 8999999999998764
No 80
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=100.00 E-value=3.8e-31 Score=266.29 Aligned_cols=338 Identities=12% Similarity=0.037 Sum_probs=227.3
Q ss_pred EEEeecCCcccccCCCCCHHHHHHHHHHHhhcc--ccccccCChHHHHHHHHHHhhCC--CCCC-EEEEeCChHHHHHHH
Q 011777 97 RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ--HATTIYLHHAIADFAEALASKMP--GNLK-VVYFVNSGTEANELA 171 (477)
Q Consensus 97 ~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~--~~~~~~~~~~~~~l~~~La~~~~--~~~~-~v~~~~sGseA~~~A 171 (477)
.+|||..+.. .+| .+|++.+++.++++... +....+..+.+..+++.+.+.++ .+.+ +|++++||++|++.+
T Consensus 31 ~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~ 107 (386)
T 1u08_A 31 QAINLSQGFP--DFD-GPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAA 107 (386)
T ss_dssp TCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHH
T ss_pred CeEEecCCCC--CCC-CCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHH
Confidence 4788888765 466 68999999999987521 11111223445555555555433 4456 899999999999999
Q ss_pred HHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCC
Q 011777 172 MLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGK 251 (477)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~ 251 (477)
++.+. .++++|++.+++||++.......+. .+..++.... .+..| +++|++.++ ++
T Consensus 108 ~~~~~--~~gd~vl~~~p~~~~~~~~~~~~g~-----------~~~~v~~~~~---~~~~d----~~~l~~~l~----~~ 163 (386)
T 1u08_A 108 ITALV--RNGDEVICFDPSYDSYAPAIALSGG-----------IVKRMALQPP---HFRVD----WQEFAALLS----ER 163 (386)
T ss_dssp HHHHC--CTTCEEEEEESCCTTHHHHHHHTTC-----------EEEEEECCTT---TCCCC----HHHHHHHCC----TT
T ss_pred HHHhC--CCCCEEEEeCCCchhHHHHHHHcCC-----------EEEEeecCcc---cCcCC----HHHHHHhhc----cc
Confidence 99763 3567899999999987654322211 1122221110 11222 477887775 46
Q ss_pred eeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCC---Ccccc-ccCCCcceeeeccccc-Cc
Q 011777 252 VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSH---YWGFE-TQGVIPDIVTMAKGIG-NG 326 (477)
Q Consensus 252 ~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~---~~~~~-~~gv~pDivt~sK~lg-~G 326 (477)
+++|++++.++++|.+ ++.+++++|.++|++||+++|+||+|++|.++|.. +..++ ..+..+.+.++||.++ +|
T Consensus 164 ~~~v~l~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 242 (386)
T 1u08_A 164 TRLVILNTPHNPSATV-WQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTG 242 (386)
T ss_dssp EEEEEEESSCTTTCCC-CCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGG
T ss_pred CEEEEEeCCCCCCCcc-CCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcc
Confidence 7888887778888854 57889999999999999999999999998776621 22222 2456666778999999 69
Q ss_pred cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccce
Q 011777 327 LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGL 406 (477)
Q Consensus 327 ~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~ 406 (477)
+|+|++++++++++.+....+..+++.++++++++.++|+.. +++.+++++..+..++.+.+...+++........|+
T Consensus 243 ~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~ 320 (386)
T 1u08_A 243 WKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAE--PEHYLALPDFYRQKRDILVNALNESRLEILPCEGTY 320 (386)
T ss_dssp GCCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC--THHHHTHHHHHHHHHHHHHHHTTSSSCEECCCCBSS
T ss_pred cceEEEEcCHHHHHHHHHHHHhhccCCChHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCceE
Confidence 999999999999988876555568888999999999998854 233333444334444444433333332222223367
Q ss_pred eEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCC------CCCEEEEeCCCCCcHHHHHHHHHHHHH
Q 011777 407 MVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGL------HGNVFRIKPPMCFTKDDADFLVDALDY 472 (477)
Q Consensus 407 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~------~~~~iRi~p~~~~t~e~i~~~l~~l~~ 472 (477)
++++++.... . ....++.+.|. ++||++.++.. ..+++||+++ .++++|++++++|++
T Consensus 321 ~~~~~~~~~~--~----~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~--~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 321 FLLVDYSAVS--T----LDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA--KKESTLLAAAERLRQ 385 (386)
T ss_dssp EEEEECTTTC--C----SCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred EEEEecCCCC--C----CCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEc--CCHHHHHHHHHHHhh
Confidence 8888763210 0 01346777776 68999988742 2468999876 489999999999864
No 81
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.98 E-value=5.9e-30 Score=256.13 Aligned_cols=324 Identities=15% Similarity=0.130 Sum_probs=231.9
Q ss_pred EeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhh------CCCCCCEEEEeCChHHHHHHHH
Q 011777 99 LDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASK------MPGNLKVVYFVNSGTEANELAM 172 (477)
Q Consensus 99 lD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~------~~~~~~~v~~~~sGseA~~~Al 172 (477)
|||.++.. ++| .+|++.+++.+++++.......|..+...++++.++++ ++.+.++|++++|+++|++.++
T Consensus 33 idl~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~ 109 (369)
T 3cq5_A 33 IRLNTNEN--PYP-PSEALVADLVATVDKIATELNRYPERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLL 109 (369)
T ss_dssp EECSSCCC--CSC-CCHHHHHHHHHHHHHHGGGTTSCCCTTCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHH
T ss_pred eeccCCCC--CCC-CCHHHHHHHHHHHHhcccccccCCCccHHHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHH
Confidence 89988775 566 68999999999987642212233333234666666666 5556678999999999999999
Q ss_pred HHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCe
Q 011777 173 LMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKV 252 (477)
Q Consensus 173 ~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~ 252 (477)
+.+. .+++.|++.+++||++.......+. .+..++... .+..| ++++++.++. .++
T Consensus 110 ~~l~--~~gd~Vl~~~~~y~~~~~~~~~~g~-----------~~~~v~~~~----~~~~d----~~~l~~~i~~---~~~ 165 (369)
T 3cq5_A 110 QAFG--GPGRTALGFQPSYSMHPILAKGTHT-----------EFIAVSRGA----DFRID----MDVALEEIRA---KQP 165 (369)
T ss_dssp HHHC--STTCEEEEEESSCTHHHHHHHHTTC-----------EEEEEECCT----TSSCC----HHHHHHHHHH---HCC
T ss_pred HHhc--CCCCEEEEcCCChHHHHHHHHHcCC-----------EEEEecCCc----CCCCC----HHHHHHHhhc---cCC
Confidence 8763 3567899999999987654433221 112222111 11112 5778888762 156
Q ss_pred eEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc-cccC-CCcceeeeccccc-Cccce
Q 011777 253 AGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF-ETQG-VIPDIVTMAKGIG-NGLPL 329 (477)
Q Consensus 253 a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~-~~~g-v~pDivt~sK~lg-~G~pi 329 (477)
++|+++++++++|.+.+ ++++.++|+.+++++|+||+|++|++.. ..+.. +.++ ..+++.++||.++ +|+|+
T Consensus 166 ~~v~~~~~~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~ 240 (369)
T 3cq5_A 166 DIVFVTTPNNPTGDVTS----LDDVERIINVAPGIVIVDEAYAEFSPSP-SATTLLEKYPTKLVVSRTMSKAFDFAGGRL 240 (369)
T ss_dssp SEEEEESSCTTTCCCCC----HHHHHHHHHHCSSEEEEECTTGGGCCSC-CGGGGTTTCTTTEEEEEESSSTTSCGGGCC
T ss_pred CEEEEeCCCCCCCCCCC----HHHHHHHHHhCCCEEEEECCchhhcCCc-chHHHHhhCCCCEEEEEechHhcCCcccce
Confidence 78888888888897765 6777888888889999999999887643 33332 3344 5567778999998 69999
Q ss_pred EEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeE
Q 011777 330 GAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK-ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMV 408 (477)
Q Consensus 330 g~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~ 408 (477)
|++++++++++.+.... .+|+.|+++++++.++|+..+. ++..++++++.+++.+.|++. + +...++.|.++
T Consensus 241 G~~~~~~~~~~~l~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g-~~~~~~~~~~~ 313 (369)
T 3cq5_A 241 GYFVANPAFIDAVMLVR--LPYHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEEL----G-YAVVPSESNFV 313 (369)
T ss_dssp EEEEECTHHHHHHHTTS--CTTCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHH----T-CEEECCSSSEE
T ss_pred EEEEeCHHHHHHHHHcC--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC----C-CEECCCCCeEE
Confidence 99999999988887543 4577899999999999975321 345666667777777777653 2 23345678888
Q ss_pred EEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777 409 GMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMS 475 (477)
Q Consensus 409 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~ 475 (477)
++++.. ...++.+.|.++||.+.+++ ..+++||+++ +++|+++++++|+++++
T Consensus 314 ~~~~~~----------~~~~l~~~l~~~gi~v~~~~-~~~~iRis~~---~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 314 FFGDFS----------DQHAAWQAFLDRGVLIRDVG-IAGHLRTTIG---VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp EEECCS----------SHHHHHHHHHHTTEECBCCS-CTTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred EEECCC----------CHHHHHHHHHHCCEEEEECC-CCCeEEEEeC---CHHHHHHHHHHHHHHHh
Confidence 886620 13567888899999999873 3578999876 79999999999999875
No 82
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.98 E-value=4.9e-31 Score=267.84 Aligned_cols=340 Identities=15% Similarity=0.066 Sum_probs=231.5
Q ss_pred EEeecCCcccccCCCCCHHHHHHHHHHHhhc--cccccccCChHHHHHHHHHHhhCC--CCCC-EEEEeCChHHHHHHHH
Q 011777 98 YLDAFAGIVTVSCGHCHPDVLNAIFEQSKLL--QHATTIYLHHAIADFAEALASKMP--GNLK-VVYFVNSGTEANELAM 172 (477)
Q Consensus 98 ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~--~~~~~~~~~~~~~~l~~~La~~~~--~~~~-~v~~~~sGseA~~~Al 172 (477)
+|||..+.. .+| .+|++.+++.+++++. .+....+..+.+..+++.+.+.++ .+.+ +|++++||++|++.++
T Consensus 27 ~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~ 103 (411)
T 2o0r_A 27 AVNLGQGFP--DED-GPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAV 103 (411)
T ss_dssp CEESSCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHH
T ss_pred eeeccCcCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHH
Confidence 789888764 466 6899999999999762 111111223445556666655434 3456 8999999999999999
Q ss_pred HHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcC-CCCCCCHHHHHHHHHHHHhccCCCC
Q 011777 173 LMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYH-GSFGSDAARYAQDLQDHIDFGTSGK 251 (477)
Q Consensus 173 ~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~~~~ 251 (477)
+.+. .+++.|++.+++||+........+ ...+.+|.... ..+..| +++|++.++ .+
T Consensus 104 ~~~~--~~gd~Vl~~~~~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~~~~d----~~~l~~~l~----~~ 160 (411)
T 2o0r_A 104 LGLV--EPGSEVLLIEPFYDSYSPVVAMAG-------------AHRVTVPLVPDGRGFALD----ADALRRAVT----PR 160 (411)
T ss_dssp HHHC--CTTCEEEEEESCCTTHHHHHHHTT-------------CEEEEEECEEETTEEECC----HHHHHHHCC----TT
T ss_pred HHhc--CCCCEEEEeCCCcHhHHHHHHHcC-------------CEEEEeeccccccCCCCC----HHHHHHhhc----cC
Confidence 9763 356789999999998755432221 11111111100 001111 578888775 36
Q ss_pred eeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccc----cCCCcceeeeccccc-Cc
Q 011777 252 VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFET----QGVIPDIVTMAKGIG-NG 326 (477)
Q Consensus 252 ~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~----~gv~pDivt~sK~lg-~G 326 (477)
+++|+++++++++|. .++.+++++|.++|++||+++|+||+|++|.++|.....+.. .+..+.+.++||.++ .|
T Consensus 161 ~~~v~l~~~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 239 (411)
T 2o0r_A 161 TRALIINSPHNPTGA-VLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTG 239 (411)
T ss_dssp EEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTT
T ss_pred ceEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCcc
Confidence 788888887888885 457889999999999999999999999998877632222222 334455668999998 69
Q ss_pred cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeecc
Q 011777 327 LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGR 404 (477)
Q Consensus 327 ~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~ 404 (477)
+|+|++++++++++.+.......+++.++++++++.++|+..++ ++..++++++.+++.+.|+++ +........
T Consensus 240 ~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~ 315 (411)
T 2o0r_A 240 WKIGWACGPAELIAGVRAAKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTEI----GFAVHDSYG 315 (411)
T ss_dssp TCEEEEECCHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH----TCEECCCCB
T ss_pred ceEEEEeeCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc----CCEecCCCe
Confidence 99999999999998887655556788888899999999875421 344556666666666666654 322222334
Q ss_pred ceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC---------------CCEEEEeCCCCCcHHHHHHHHH
Q 011777 405 GLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH---------------GNVFRIKPPMCFTKDDADFLVD 468 (477)
Q Consensus 405 g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~---------------~~~iRi~p~~~~t~e~i~~~l~ 468 (477)
|+++++++.... . ....++.+.|+ ++||++.++..+ .+++||++. .++++++++++
T Consensus 316 g~~~~~~~~~~~----~--~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~--~~~e~i~~~~~ 387 (411)
T 2o0r_A 316 TYFLCADPRPLG----Y--DDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC--KRDDTLDEAIR 387 (411)
T ss_dssp SSEEEEECGGGT----C--CCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECC--SCHHHHHHHHH
T ss_pred eEEEEEecCCCC----C--CCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEec--CCHHHHHHHHH
Confidence 667888774210 0 01346777776 679999886322 468999875 48999999999
Q ss_pred HHHHHHhh
Q 011777 469 ALDYSMSK 476 (477)
Q Consensus 469 ~l~~~l~~ 476 (477)
+|++++++
T Consensus 388 ~l~~~~~~ 395 (411)
T 2o0r_A 388 RLSVLAER 395 (411)
T ss_dssp HHGGGGC-
T ss_pred HHHHHHhc
Confidence 99887653
No 83
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.97 E-value=8.5e-31 Score=265.67 Aligned_cols=345 Identities=13% Similarity=0.015 Sum_probs=233.9
Q ss_pred CCCCEEEeecCCcccc-cCCCCCHHHHHHHHHHHhhcc--ccccccCChHHHHHHHHHHhhC--CCCCCEEEEeCChHHH
Q 011777 93 ENGRRYLDAFAGIVTV-SCGHCHPDVLNAIFEQSKLLQ--HATTIYLHHAIADFAEALASKM--PGNLKVVYFVNSGTEA 167 (477)
Q Consensus 93 ~dG~~ylD~~~g~~~~-~lGh~~p~v~~Av~~~l~~~~--~~~~~~~~~~~~~l~~~La~~~--~~~~~~v~~~~sGseA 167 (477)
.+|+.++||..+..+. .++ .+|++.+++.+++++.. +....+..+.+..+++.+.+.. +.+.++|++++||++|
T Consensus 35 ~~g~~~i~l~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a 113 (406)
T 1xi9_A 35 KKGIKVIRLNIGDPVKFDFQ-PPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEA 113 (406)
T ss_dssp HTTCCCEECCCCCGGGTTCC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHH
T ss_pred HcCCCEEEecCCCCCcCCCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHH
Confidence 4688999999887643 456 47999999999987632 1111122344555555555432 4456789999999999
Q ss_pred HHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc
Q 011777 168 NELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG 247 (477)
Q Consensus 168 ~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~ 247 (477)
++.+++.+. .+++.|++.+++||++.......+. .+..++.. ....+..| +++|++.++
T Consensus 114 l~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~g~-----------~~~~v~~~--~~~~~~~d----~~~l~~~l~-- 172 (406)
T 1xi9_A 114 LQLIFGALL--DPGDEILVPGPSYPPYTGLVKFYGG-----------KPVEYRTI--EEEDWQPD----IDDIRKKIT-- 172 (406)
T ss_dssp HHHHHHHHC--CTTCEEEEEESCCHHHHHHHHHTTC-----------EEEEEEEE--GGGTSEEC----HHHHHHHCC--
T ss_pred HHHHHHHhC--CCCCEEEEcCCCCccHHHHHHHcCC-----------EEEEeecC--CCcCCcCC----HHHHHHhhC--
Confidence 999999763 3567899999999987654432211 11122111 00011111 478888775
Q ss_pred CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCc-cee--eeccccc
Q 011777 248 TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIP-DIV--TMAKGIG 324 (477)
Q Consensus 248 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~p-Div--t~sK~lg 324 (477)
.++++|++++.++++|. .++++++++|.++|++||+++|+||+|++|.+.+ ....+..++... +++ ++||.++
T Consensus 173 --~~~~~v~i~~p~nptG~-~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~i~~~s~sK~~~ 248 (406)
T 1xi9_A 173 --DRTKAIAVINPNNPTGA-LYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEG-EHISPGSLTKDVPVIVMNGLSKVYF 248 (406)
T ss_dssp --TTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSS-CCCCHHHHCSSSCEEEEEESTTTTC
T ss_pred --cCceEEEEECCCCCCCC-CcCHHHHHHHHHHHHHcCCEEEEEcCccccccCC-CCCCHHHcCCCceEEEEeccccccC
Confidence 35778888877888885 4578899999999999999999999999987744 333343332111 343 6899998
Q ss_pred -CccceEEEE--eCH----HHHHhhcccccccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHhC
Q 011777 325 -NGLPLGAVV--TTP----EIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQERH 395 (477)
Q Consensus 325 -~G~pig~v~--~~~----~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~ 395 (477)
+|+|+|+++ +++ ++++.+....... ++.|+++++++.++|+...+ +++.++++++.+++.+.|++ .
T Consensus 249 ~~G~r~G~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~----~ 323 (406)
T 1xi9_A 249 ATGWRLGYMYFVDPENKLSEVREAIDRLARIR-LCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNE----I 323 (406)
T ss_dssp CGGGCCEEEEEECTTCTTHHHHHHHHHHHHHT-CCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHT----S
T ss_pred CCccEEEEEEEecCchhHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHh----C
Confidence 699999999 898 9888876543333 77889999999999964332 34455555666666555544 3
Q ss_pred CCceeeecc-ceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHH
Q 011777 396 DIIGDVRGR-GLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDA 469 (477)
Q Consensus 396 ~~~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~ 469 (477)
+.+..+.+. |+++++.+.... .....++.+.|+ ++||.+.++..+ .+++||+++ +++++|++++++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~--~~~~~i~~~~~~ 395 (406)
T 1xi9_A 324 PGISTTKPQGAFYIFPKIEVGP------WKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL--PPIEILEEAMDR 395 (406)
T ss_dssp TTEECCCCCBSSEECCEECSCS------CSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC--SCHHHHHHHHHH
T ss_pred CCCeeecCCeeEEEEEecCccC------CCCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEec--CCHHHHHHHHHH
Confidence 333333343 556666663200 011456777886 889999887533 478999987 899999999999
Q ss_pred HHHHHhh
Q 011777 470 LDYSMSK 476 (477)
Q Consensus 470 l~~~l~~ 476 (477)
|++++++
T Consensus 396 l~~~l~~ 402 (406)
T 1xi9_A 396 FEKFMKE 402 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998875
No 84
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.97 E-value=6.9e-31 Score=268.69 Aligned_cols=353 Identities=10% Similarity=0.030 Sum_probs=243.4
Q ss_pred eeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc-ccc--cccCChHHHHHHHHHHhhCC--CCCCEE
Q 011777 84 EGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ-HAT--TIYLHHAIADFAEALASKMP--GNLKVV 158 (477)
Q Consensus 84 ~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~-~~~--~~~~~~~~~~l~~~La~~~~--~~~~~v 158 (477)
.+....+++.+|+.+|||.+|.. +++ .+|+|.+++.+++.... ... ..+..+.+..+++.+.+..+ .+.++|
T Consensus 32 ~~~~~~~~~~~g~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i 108 (437)
T 3g0t_A 32 VALVTNLEKATGTKFCRMEMGVP--GLP-APQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARAC 108 (437)
T ss_dssp HHHHHHHHHHHTCCCEECCCCSC--CSC-CCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGE
T ss_pred HHHHHHHHHhcCCCEEeccCcCC--CCC-CCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccE
Confidence 44556677888999999999885 454 68999999999987522 111 11112334444444443322 346789
Q ss_pred EEeCChHHHHHHHHHHHHhccCCc--eEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHH
Q 011777 159 YFVNSGTEANELAMLMARLSTGNL--GMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARY 236 (477)
Q Consensus 159 ~~~~sGseA~~~Al~~ar~~~~~~--~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (477)
++|+||++|++.+++.+....+++ +|++..++|+++.......+. .+..++.. ...+. ..
T Consensus 109 ~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~-----------~~~~v~~~---~~~~~----~d 170 (437)
T 3g0t_A 109 VPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQ-----------KFESFDLF---EYRGE----KL 170 (437)
T ss_dssp EEESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHTC-----------CCEEEEGG---GGCTT----HH
T ss_pred EEeCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcCC-----------EEEEEeec---CCCCc----cC
Confidence 999999999999999775113556 899999999987665544322 11222211 00111 12
Q ss_pred HHHHHHHHhccCCCCeeEEEe-cccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCC-C-------ccc
Q 011777 237 AQDLQDHIDFGTSGKVAGFIA-ETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSH-Y-------WGF 307 (477)
Q Consensus 237 ~~~le~~i~~~~~~~~a~vi~-epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~-~-------~~~ 307 (477)
+++|+++++ ..++++|++ +| ++++|. ..+.+.+++|.++|++||+++|+||+|++|.+.+.. . ..+
T Consensus 171 ~~~l~~~l~---~~~~~~v~l~~p-~nptG~-~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 245 (437)
T 3g0t_A 171 REKLESYLQ---TGQFCSIIYSNP-NNPTWQ-CMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSV 245 (437)
T ss_dssp HHHHHHHHT---TTCCCEEEEESS-CTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCG
T ss_pred HHHHHHHHh---cCCceEEEEeCC-CCCCCC-cCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhcc
Confidence 578888884 134555554 55 677774 557788999999999999999999999987665411 1 222
Q ss_pred cc-cCCCcceeeeccccc-CccceEEEEeCHHHHH-h-----------------hcccccccCCCCcHHHHHHHHHHHHh
Q 011777 308 ET-QGVIPDIVTMAKGIG-NGLPLGAVVTTPEIAN-V-----------------MAQKIQFNTFGGNPVCSAGGLAVLRV 367 (477)
Q Consensus 308 ~~-~gv~pDivt~sK~lg-~G~pig~v~~~~~~~~-~-----------------~~~~~~~~t~~~~~~~~aaa~a~l~~ 367 (477)
.. .+....+.++||.++ .|+|+|++++++++++ . +.......+++.|+++++++.++|+.
T Consensus 246 ~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~ 325 (437)
T 3g0t_A 246 ANYTDNYILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKA 325 (437)
T ss_dssp GGTCSCEEEEEESTTTTSCGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCccCCCCccceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhC
Confidence 22 344445668999999 7999999999999998 7 66555556788999999999999987
Q ss_pred hc-----hhhHHHHHHHHHHHHHHHHHHHHHhCCCcee------ee-ccceeEEEEEeeCCCCCCccHHHHHHHHHHHHH
Q 011777 368 ID-----KERRQAHCADVGSHLLGRLRTLQERHDIIGD------VR-GRGLMVGMELVTDRKEKTPAKAETAVLFEKLRE 435 (477)
Q Consensus 368 l~-----~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~------v~-g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~ 435 (477)
.+ .++..++++++.+++.+.|+++ +.... .+ ..|.++++.+. . ....++.+.|.+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~l~~~L~~ 392 (437)
T 3g0t_A 326 CNDGEYNFRDSVIEYGRKARIMKKMFLDN----GFNIVYDKDGNEPLADGFYFTVGYK-G--------MDSSKLIEKFVR 392 (437)
T ss_dssp HHTTSCCHHHHHHHHHHHHHHHHHHHHTT----TEEESSCEETTEECCSSSEEEEEET-T--------CCHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHc----CCEEeccccCCCCCceeEEEEEecC-C--------CCHHHHHHHHHH
Confidence 54 2345666666666666666554 32211 14 56778888873 1 124578889999
Q ss_pred cCceeeccCCCC----CEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 436 LGVLVGKGGLHG----NVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 436 ~Gv~v~~~~~~~----~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
+||.+.++..++ +++||+++.. +++++++++++|.+++++
T Consensus 393 ~gi~v~~~~~~~~~~~~~iRis~~~~-~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 393 YGMCAITLKTTGSKRNEAMRICTSLL-PESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp TTEECEESTTTTCCCTTCEEEECSSS-CGGGHHHHHHHHHHHHHH
T ss_pred cCeEEeeccccCCCCCCEEEEEEecC-CHHHHHHHHHHHHHHHhc
Confidence 999999875332 6799998844 999999999999998764
No 85
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.97 E-value=1.2e-30 Score=264.94 Aligned_cols=338 Identities=15% Similarity=0.114 Sum_probs=231.2
Q ss_pred CCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc--ccccccCChHHHHHHHHHHhhCC--CCCCEEEEeCChHHHH
Q 011777 93 ENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ--HATTIYLHHAIADFAEALASKMP--GNLKVVYFVNSGTEAN 168 (477)
Q Consensus 93 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~--~~~~~~~~~~~~~l~~~La~~~~--~~~~~v~~~~sGseA~ 168 (477)
.+|+.++||.++.. .++ .+|++.+++ ++++... +....+..+.+..+++.+.+..+ .+.+++++++||++|+
T Consensus 40 ~~g~~~i~l~~~~~--~~~-~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~ 115 (409)
T 2gb3_A 40 KRGVRIHHLNIGQP--DLK-TPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAI 115 (409)
T ss_dssp HTTCEEEECSSCCC--CSC-CCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHH
T ss_pred hcCCCEEeccCCCC--CCC-CCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHH
Confidence 46889999988775 456 478999999 8886532 11111223445556666555432 3457899999999999
Q ss_pred HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777 169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT 248 (477)
Q Consensus 169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~ 248 (477)
+.+++.+. .+++.|++.+++||++.......+. .+..++.. ....+.. +++|+++++
T Consensus 116 ~~~~~~~~--~~gd~Vl~~~~~~~~~~~~~~~~g~-----------~~~~v~~~--~~~~~~~-----~~~l~~~l~--- 172 (409)
T 2gb3_A 116 LFSFAVIA--NPGDEILVLEPFYANYNAFAKIAGV-----------KLIPVTRR--MEEGFAI-----PQNLESFIN--- 172 (409)
T ss_dssp HHHHHHHC--CTTCEEEEEESCCTHHHHHHHHHTC-----------EEEEEECC--GGGTSCC-----CTTGGGGCC---
T ss_pred HHHHHHhC--CCCCEEEEcCCCchhHHHHHHHcCC-----------EEEEeccC--CCCCCcc-----HHHHHHhhC---
Confidence 99999763 3567899999999987654332211 11112111 0001110 145666554
Q ss_pred CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCC-Cccee--eeccccc-
Q 011777 249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGV-IPDIV--TMAKGIG- 324 (477)
Q Consensus 249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv-~pDiv--t~sK~lg- 324 (477)
.++++|+++++++++|.+ ++++++++|.++|++||++||+||+|+++.++| .+++. ..+. ..|++ ++||.++
T Consensus 173 -~~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~-~~~~~-~~~~~~~~i~~~s~sK~~g~ 248 (409)
T 2gb3_A 173 -ERTKGIVLSNPCNPTGVV-YGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRG-EFASA-LSIESDKVVVIDSVSKKFSA 248 (409)
T ss_dssp -TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CCCCG-GGSCCTTEEEEEESTTTTTC
T ss_pred -cCCeEEEECCCCCCCCCC-cCHHHHHHHHHHHHHcCCEEEEECcccccccCC-CCCCc-cccCCCCEEEEecchhccCC
Confidence 367888888778888854 578899999999999999999999999988776 44443 2222 23654 7899998
Q ss_pred CccceEEEEeCH-HHHHhhcccccccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHhCCCceee
Q 011777 325 NGLPLGAVVTTP-EIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQERHDIIGDV 401 (477)
Q Consensus 325 ~G~pig~v~~~~-~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v 401 (477)
+|+|+|++++++ ++++.+.......+ +.|+++++++.++|+...+ +++.++++++.+++.+.|+++ ....+ ..
T Consensus 249 ~G~r~G~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~-~~ 324 (409)
T 2gb3_A 249 CGARVGCLITRNEELISHAMKLAQGRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEH--GLKRF-TK 324 (409)
T ss_dssp GGGCCEEEECSCHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHT--TCCCB-CC
T ss_pred ccceEEEEEECcHHHHHHHHHHHhccC-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHc--Cceee-eC
Confidence 689999999998 89888776544455 8899999999999864211 334555666666666666654 22220 12
Q ss_pred eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHc------CceeeccCCC-------CCEEEEeCCCCCcHHHHHHHHH
Q 011777 402 RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLREL------GVLVGKGGLH-------GNVFRIKPPMCFTKDDADFLVD 468 (477)
Q Consensus 402 ~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~------Gv~v~~~~~~-------~~~iRi~p~~~~t~e~i~~~l~ 468 (477)
+..|+++++++. . ....++.+.|+++ ||.+.++..+ .+++||+++ +++++++++++
T Consensus 325 ~~~~~~~~~~~~-~--------~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~--~~~e~i~~~~~ 393 (409)
T 2gb3_A 325 PSGAFYITAELP-V--------EDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV--LEKDLLSRAID 393 (409)
T ss_dssp CSBSSEEEEECS-S--------SCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC--SCHHHHHHHHH
T ss_pred CCeeEEEEEEeC-C--------CCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC--CCHHHHHHHHH
Confidence 334667777663 1 0145688888887 9999886322 579999887 89999999999
Q ss_pred HHHHHHhh
Q 011777 469 ALDYSMSK 476 (477)
Q Consensus 469 ~l~~~l~~ 476 (477)
+|++++++
T Consensus 394 ~l~~~l~~ 401 (409)
T 2gb3_A 394 VLMEGLKM 401 (409)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 86
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.97 E-value=5.3e-30 Score=259.83 Aligned_cols=350 Identities=11% Similarity=0.004 Sum_probs=231.3
Q ss_pred CEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc---ccccccCChHHHHHHHHHHhhCC--CCC-CEEEEeCChHHHHH
Q 011777 96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ---HATTIYLHHAIADFAEALASKMP--GNL-KVVYFVNSGTEANE 169 (477)
Q Consensus 96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~---~~~~~~~~~~~~~l~~~La~~~~--~~~-~~v~~~~sGseA~~ 169 (477)
..+|||..|.. .++ .+|+|.+++.+++.... +....+..+.+..+++.+.+.++ .+. ++|++++||++|++
T Consensus 23 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~ 99 (410)
T 3e2y_A 23 PSVVNLGQGFP--DIS-PPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLF 99 (410)
T ss_dssp TTSEECSSCCC--CSC-CCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred CCeEEecCCCC--CCC-CCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHH
Confidence 45788887764 343 58999999999987531 11111223445556666555432 334 68999999999999
Q ss_pred HHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCc-------CCCCCCCHHHHHHHHHH
Q 011777 170 LAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPY-------HGSFGSDAARYAQDLQD 242 (477)
Q Consensus 170 ~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~le~ 242 (477)
.+++.+. .+++.|++..++|+++.......+.. +..++..... ...+..| ++++++
T Consensus 100 ~~~~~~~--~~gd~vl~~~p~~~~~~~~~~~~g~~-----------~~~~~~~~~~~~g~~~~~~~~~~d----~~~l~~ 162 (410)
T 3e2y_A 100 NSIQGLV--DPGDEVIIMVPFYDCYEPMVRMAGAV-----------PVFIPLRSKPTDGMKWTSSDWTFD----PRELES 162 (410)
T ss_dssp HHHHHHC--CTTCEEEEEESCCTTHHHHHHHTTCE-----------EEEEECEECCCCSSCCBGGGEECC----HHHHHT
T ss_pred HHHHHhc--CCCCEEEEeCCCchhhHHHHHHcCCE-----------EEEEeccccccccccccccCCcCC----HHHHHh
Confidence 9999763 36678999999999876544333211 1111111000 0001111 467777
Q ss_pred HHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccccc----CCCcceee
Q 011777 243 HIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ----GVIPDIVT 318 (477)
Q Consensus 243 ~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~----gv~pDivt 318 (477)
.++ .++++|++++.++++|. .++++.+++|.++|++||+++|+||+|++|.++|..+..+... +...++.+
T Consensus 163 ~~~----~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 237 (410)
T 3e2y_A 163 KFS----SKTKAIILNTPHNPLGK-VYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGS 237 (410)
T ss_dssp TCC----TTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEE
T ss_pred hcC----CCceEEEEeCCCCCCCc-CcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEec
Confidence 664 46888888888888885 4578889999999999999999999999998877333333222 23345568
Q ss_pred eccccc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHh-----hchhhHHHHHHHHHHHHHHHHHHHH
Q 011777 319 MAKGIG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRV-----IDKERRQAHCADVGSHLLGRLRTLQ 392 (477)
Q Consensus 319 ~sK~lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~-----l~~~~~~~~~~~~~~~l~~~L~~l~ 392 (477)
+||.+| +|+|+||+++++++++.+....+..+++.++++++++.++|+. ...+++.++.++..+..++.+.+..
T Consensus 238 ~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 317 (410)
T 3e2y_A 238 AGKTFSVTGWKLGWSIGPAHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLL 317 (410)
T ss_dssp HHHHSSCGGGCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhcCCCCceEEEEEECHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 7999999999999999887766677899999999999999874 1123344444444444444444444
Q ss_pred HhCCCceeeeccceeEEEEEeeCCCCCC---ccHHHHHHHHHH-HHHcCceeeccCCC---------CCEEEEeCCCCCc
Q 011777 393 ERHDIIGDVRGRGLMVGMELVTDRKEKT---PAKAETAVLFEK-LRELGVLVGKGGLH---------GNVFRIKPPMCFT 459 (477)
Q Consensus 393 ~~~~~~~~v~g~g~~~~i~~~~~~~~~~---~~~~~~~~~~~~-l~~~Gv~v~~~~~~---------~~~iRi~p~~~~t 459 (477)
.+++.....+..|+++++++........ .......++.+. +.++||++.++..+ .+++||+ +..+
T Consensus 318 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis--~~~~ 395 (410)
T 3e2y_A 318 NSVGLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFC--FIKK 395 (410)
T ss_dssp HTTTCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEE--CCCC
T ss_pred HHCCCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEE--EcCC
Confidence 4445444445567788888753211000 000112345554 45779999987543 3789997 4569
Q ss_pred HHHHHHHHHHHHH
Q 011777 460 KDDADFLVDALDY 472 (477)
Q Consensus 460 ~e~i~~~l~~l~~ 472 (477)
+++|++++++|++
T Consensus 396 ~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 396 DSTLDAAEEIFRA 408 (410)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999975
No 87
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.97 E-value=3.4e-30 Score=260.25 Aligned_cols=335 Identities=14% Similarity=0.054 Sum_probs=232.3
Q ss_pred CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc------ccccccCChHHHHHHHHHHhhCC--CCCCEEEEeCChHH
Q 011777 95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ------HATTIYLHHAIADFAEALASKMP--GNLKVVYFVNSGTE 166 (477)
Q Consensus 95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~------~~~~~~~~~~~~~l~~~La~~~~--~~~~~v~~~~sGse 166 (477)
|+.+|||..|.. ....+|+|.+++.+++++.. +....+..+.+.++++++.+.++ .+.++|+||+||++
T Consensus 34 ~~~~i~l~~~~~---~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~ 110 (398)
T 3ele_A 34 KENVYDFSIGNP---SIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAA 110 (398)
T ss_dssp GGGCEECCSCCC---CSCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHH
T ss_pred CCCeEEeecCCC---CCCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHH
Confidence 567999998743 22478999999999987631 11111223456666666665543 45678999999999
Q ss_pred HHHHHHHHHHhccCC-ceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHh
Q 011777 167 ANELAMLMARLSTGN-LGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHID 245 (477)
Q Consensus 167 A~~~Al~~ar~~~~~-~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~ 245 (477)
|++.+++.+.. ++ +.|++.+++||++....... |...+.+|.... .+..| +++|+++++
T Consensus 111 al~~~~~~l~~--~g~d~vl~~~p~~~~~~~~~~~~-------------g~~~~~v~~~~~-~~~~d----~~~l~~~l~ 170 (398)
T 3ele_A 111 SLSICFRALTS--DAYDEFITIAPYFPEYKVFVNAA-------------GARLVEVPADTE-HFQID----FDALEERIN 170 (398)
T ss_dssp HHHHHHHHHCC--STTCEEEEESSCCTHHHHHHHHT-------------TCEEEEECCCTT-TSSCC----HHHHHHTCC
T ss_pred HHHHHHHHHcC--CCCCEEEEeCCCchhhHHHHHHc-------------CCEEEEEecCCc-CCcCC----HHHHHHHhC
Confidence 99999997732 44 89999999999876554333 222222222111 11112 477887775
Q ss_pred ccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHH------hCcEEEEcCcccCccCCCCCCcc--ccccCCCccee
Q 011777 246 FGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRK------AGGVCIADEVQTGFGRTGSHYWG--FETQGVIPDIV 317 (477)
Q Consensus 246 ~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~------~gillI~DEv~~gfgr~G~~~~~--~~~~gv~pDiv 317 (477)
.++++|+++..+|++|. .++.+.+++|.++|++ ||+++|+||+|++|.++| .... .+..+....+.
T Consensus 171 ----~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~i~~~ 244 (398)
T 3ele_A 171 ----AHTRGVIINSPNNPSGT-VYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDG-IKVPFVTKYYDNTLVCY 244 (398)
T ss_dssp ----TTEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTT-CCCCCGGGTCSSEEEEE
T ss_pred ----cCCCEEEEcCCCCCCCC-CCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCC-CCcCChHhhcCCeEEEE
Confidence 36777777666778885 5577889999999999 999999999999998876 2222 23445556666
Q ss_pred eeccccc-CccceEEEEeCHHHHH------hhccc-ccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 011777 318 TMAKGIG-NGLPLGAVVTTPEIAN------VMAQK-IQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLR 389 (477)
Q Consensus 318 t~sK~lg-~G~pig~v~~~~~~~~------~~~~~-~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~ 389 (477)
++||.++ +|+|+||+++++++.+ .+... ...++++.+++++.++.+.++ .....++++++.+++.+.|+
T Consensus 245 s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~l~~~L~ 321 (398)
T 3ele_A 245 SYSKSLSLPGERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQG---ATGDINAYKENRDLLYEGLT 321 (398)
T ss_dssp ESTTTSSCTTTCCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTT---CCCCHHHHHHHHHHHHHHHH
T ss_pred ehhhcCCCccceeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHH
Confidence 8999999 7999999999987432 22221 223467778888888776654 33356778888888888888
Q ss_pred HHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC--CCEEEEeCCCCCcHHHHHHHH
Q 011777 390 TLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH--GNVFRIKPPMCFTKDDADFLV 467 (477)
Q Consensus 390 ~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~p~~~~t~e~i~~~l 467 (477)
++ +........|.++++.+... ...++.+.|.++||++.++..+ .+++||++. +++++|++++
T Consensus 322 ~~----g~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~--~~~e~i~~~l 386 (398)
T 3ele_A 322 RI----GYHCFKPDGAFYMFVKALED---------DSNAFCEKAKEEDVLIVAADGFGCPGWVRISYC--VDREMIKHSM 386 (398)
T ss_dssp HH----TCCEECCSBSSEEEEECSSS---------CHHHHHHHHHTTTEECEESGGGTCTTEEEEECC--SCHHHHHHHH
T ss_pred Hc----CCeecCCCeeEEEEEEcCCC---------CHHHHHHHHHHCCEEEeCccccCCCCeEEEEec--CCHHHHHHHH
Confidence 76 22112222355577765211 1456788899999999987543 479999864 7999999999
Q ss_pred HHHHHHHhh
Q 011777 468 DALDYSMSK 476 (477)
Q Consensus 468 ~~l~~~l~~ 476 (477)
++|++++++
T Consensus 387 ~~l~~~l~~ 395 (398)
T 3ele_A 387 PAFEKIYKK 395 (398)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998864
No 88
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.97 E-value=8.6e-31 Score=269.17 Aligned_cols=347 Identities=12% Similarity=0.069 Sum_probs=232.7
Q ss_pred eCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc--ccccccCC-hHHHHHHHHHHhhC----CCCCCEEEEeCCh
Q 011777 92 DENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ--HATTIYLH-HAIADFAEALASKM----PGNLKVVYFVNSG 164 (477)
Q Consensus 92 d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~--~~~~~~~~-~~~~~l~~~La~~~----~~~~~~v~~~~sG 164 (477)
+.+|+.+|||..|.. .++ .+|+|++++.+++++.. +....|.. ....+|++.+++++ +.+.++|+|++|+
T Consensus 65 ~~~~~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~ 141 (449)
T 3qgu_A 65 KNPDAKIISLGIGDT--TEP-LPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGS 141 (449)
T ss_dssp HCTTCCCEECSSCCC--CCC-CCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCH
T ss_pred hCCCCCEEEeeCCCC--CCC-CCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCH
Confidence 347899999998854 343 68999999999998643 11222332 33567788888776 5566899999999
Q ss_pred HHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHH
Q 011777 165 TEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHI 244 (477)
Q Consensus 165 seA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i 244 (477)
+++++.+ ... ..+++.|++.+++||++.......+.....+. .....+..++... ...+. .++++
T Consensus 142 ~~al~~~-~~l--~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~-~~~~~~~~~~~~~--~~~~~-------~~~~~-- 206 (449)
T 3qgu_A 142 KCDIARI-QMM--FGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNG-TGFDGIEYMVCNP--DNHFF-------PDLSK-- 206 (449)
T ss_dssp HHHHHHH-HHH--HCSSSCEEEEESCCTHHHHHHHHHTCSCCBCS-SSBTTEEEEECCG--GGTTC-------CCGGG--
T ss_pred HHHHHHH-HHH--hCCCCEEEEcCCCChhHHHHHHHcCCcccccc-cccceeEEEeccc--ccCCc-------CChhH--
Confidence 9999988 322 23678899999999998776655443211100 0001122222211 11111 11211
Q ss_pred hccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccc----cCCCcceeeec
Q 011777 245 DFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFET----QGVIPDIVTMA 320 (477)
Q Consensus 245 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~----~gv~pDivt~s 320 (477)
. .++++|+++..+|++|. .++.+++++|.++|++||+++|+||+|++|+++|.....+.. .++.+++.+||
T Consensus 207 --~--~~~~~v~l~~p~NPtG~-~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 281 (449)
T 3qgu_A 207 --A--KRTDIIFFCSPNNPTGA-AATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFS 281 (449)
T ss_dssp --C--CCCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECS
T ss_pred --c--CCCCEEEEeCCCCCCCC-cCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecch
Confidence 1 35667777666777774 568889999999999999999999999999887632333322 23445577899
Q ss_pred cccc-CccceEEEEeCHHHHH--------hhcccccccCCCCcHHHHHHHHHHHHhhc---hhhHHHHHHHHHHHHHHHH
Q 011777 321 KGIG-NGLPLGAVVTTPEIAN--------VMAQKIQFNTFGGNPVCSAGGLAVLRVID---KERRQAHCADVGSHLLGRL 388 (477)
Q Consensus 321 K~lg-~G~pig~v~~~~~~~~--------~~~~~~~~~t~~~~~~~~aaa~a~l~~l~---~~~~~~~~~~~~~~l~~~L 388 (477)
|++| +|+|+||+++++++++ .+.......+++.++++++++.++++... .++..++++++.+++++.|
T Consensus 282 K~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 361 (449)
T 3qgu_A 282 KYAGFTGVRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTF 361 (449)
T ss_dssp GGGTCTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCccceeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 7999999999988765 23333334555789999999999886521 1345566666777777766
Q ss_pred HHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHc-CceeeccCCC----CCEEEEeCCCCCcHHHH
Q 011777 389 RTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLREL-GVLVGKGGLH----GNVFRIKPPMCFTKDDA 463 (477)
Q Consensus 389 ~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~----~~~iRi~p~~~~t~e~i 463 (477)
+++ +........|.++++.+. . ....++.+.|+++ ||++.++..+ .+++||+ +..++++|
T Consensus 362 ~~~----g~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis--~~~~~e~i 426 (449)
T 3qgu_A 362 TEM----GFSVYGGDDAPYIWVGFP-G--------KPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRAS--AFGSRENI 426 (449)
T ss_dssp HHT----TCCEEESSSSSEEEEECT-T--------SCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEE--CCSCHHHH
T ss_pred HHC----CCeeeCCCCeeEEEEECC-C--------CCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEE--ecCCHHHH
Confidence 654 322222234778888763 1 1135677777765 9999987433 4799997 56699999
Q ss_pred HHHHHHHHHHHhh
Q 011777 464 DFLVDALDYSMSK 476 (477)
Q Consensus 464 ~~~l~~l~~~l~~ 476 (477)
++++++|++++++
T Consensus 427 ~~~l~~l~~~~~~ 439 (449)
T 3qgu_A 427 LEAVRRFKEAYGK 439 (449)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998864
No 89
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.97 E-value=2.8e-30 Score=258.81 Aligned_cols=303 Identities=14% Similarity=0.114 Sum_probs=219.4
Q ss_pred ChHHHHHHHHHHhhC-CCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCC
Q 011777 137 HHAIADFAEALASKM-PGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGE 215 (477)
Q Consensus 137 ~~~~~~l~~~La~~~-~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~ 215 (477)
.+...+|++.+++++ +.+.+++++++||++|++.+++... .+++.|++..++|++........+
T Consensus 62 ~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~g------------- 126 (375)
T 3op7_A 62 IEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLI--EPGDHVISLYPTYQQLYDIPKSLG------------- 126 (375)
T ss_dssp TTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHC--CTTCEEEEEESSCTHHHHHHHHTT-------------
T ss_pred CCChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhc--CCCCEEEEeCCCchhHHHHHHHcC-------------
Confidence 334578899999987 3566789999999999999998763 366889999999998755433322
Q ss_pred eeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc
Q 011777 216 IHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT 295 (477)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~ 295 (477)
...+.++......+..| +++++++++ +++++|+++++++++|. .++++++++|.++|++||+++|+||+|+
T Consensus 127 ~~~~~v~~~~~~~~~~d----~~~l~~~l~----~~~~~v~~~~~~nptG~-~~~~~~l~~i~~la~~~~~~li~De~~~ 197 (375)
T 3op7_A 127 AEVDLWQIEEENGWLPD----LEKLRQLIR----PTTKMICINNANNPTGA-VMDRTYLEELVEIASEVGAYILSDEVYR 197 (375)
T ss_dssp CEEEEEEEEGGGTTEEC----HHHHHHHCC----TTCCEEEEESSCTTTCC-CCCHHHHHHHHHHHHTTTCEEEEECCSC
T ss_pred CEEEEEeccccCCCCCC----HHHHHHhhc----cCCeEEEEcCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEEcccc
Confidence 11111111111111111 578888775 46788888888888885 5588899999999999999999999999
Q ss_pred CccCCCCCCccccccCCCcceeeeccccc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHH
Q 011777 296 GFGRTGSHYWGFETQGVIPDIVTMAKGIG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQ 374 (477)
Q Consensus 296 gfgr~G~~~~~~~~~gv~pDivt~sK~lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~ 374 (477)
+|++.+ .....+.++..+++.+|||.++ +|+|+|++++++++++.+......++++.++++++++.++++.. +++.
T Consensus 198 ~~~~~~-~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~ 274 (375)
T 3op7_A 198 SFSELD-VPSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAANHQVTDILRDYRDYTMICAGVFDDLVAQLALAHY--QEIL 274 (375)
T ss_dssp CCSSSC-CCCHHHHCTTEEEEEESSSSSSCGGGCCEEEECCHHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHTH--HHHH
T ss_pred cccccC-CCchhhhcCCEEEEeEChhhcCCcccceEEEEeCHHHHHHHHHHHhhhccCCCcHHHHHHHHHHhcc--HHHH
Confidence 988764 3333456677788889999999 79999999999999999988777788899999999999988753 3344
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCceeeecc-ceeEEEEEeeCCCCCCccHHHHHHHHHHH-HHcCceeeccCCC--CCEE
Q 011777 375 AHCADVGSHLLGRLRTLQERHDIIGDVRGR-GLMVGMELVTDRKEKTPAKAETAVLFEKL-RELGVLVGKGGLH--GNVF 450 (477)
Q Consensus 375 ~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~--~~~i 450 (477)
++.++..+..++.+.+...+++.+..+.+. |.+.++.+.... ...++.+.+ .++||.+.++..+ .+++
T Consensus 275 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ll~~~gi~v~~g~~~~~~~~i 346 (375)
T 3op7_A 275 ERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDM--------PMEDFCLQLLQEHGVLLVPGNRFERDGYV 346 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSS--------CHHHHHHHHHHHHCEECEEGGGGTCTTEE
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCC--------CHHHHHHHHHHhCCEEEeChhhhCCCCeE
Confidence 555544455555555555455555444444 445566653211 134566666 5889999987544 4789
Q ss_pred EEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 451 RIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 451 Ri~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
|++ +..+++++++++++|++++++
T Consensus 347 Ri~--~~~~~~~i~~~l~~l~~~l~~ 370 (375)
T 3op7_A 347 RLG--FACEQETLIKGLEKLSQFLRR 370 (375)
T ss_dssp EEC--CCSCHHHHHHHHHHHHHHHGG
T ss_pred EEE--ecCCHHHHHHHHHHHHHHHHH
Confidence 996 456679999999999999875
No 90
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.97 E-value=4.5e-30 Score=254.98 Aligned_cols=331 Identities=11% Similarity=0.051 Sum_probs=220.1
Q ss_pred EeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeC
Q 011777 83 VEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVN 162 (477)
Q Consensus 83 ~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~ 162 (477)
.+++|.+++|.+|+.+|||.++.. +++ .+|+|.+++.+++... ..|..+...+++++|+++++.+.++|++|+
T Consensus 2 ~~~~g~~~~~~~g~~~id~~~~~~--~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~lr~~la~~~~~~~~~i~~t~ 74 (350)
T 3fkd_A 2 IFGHGDEGITPLSSEIVNFSTTVW--TDG-DKDHLEKHLVENLNCI----RHYPEPDAGTLRQMLAKRNSVDNNAILVTN 74 (350)
T ss_dssp --------------CCEECSCCSC--CCS-CCHHHHHHHHHTGGGG----GSCCCTTCHHHHHHHHHHTTCCGGGEEEES
T ss_pred cccccchHhhhccccEEEccCCCC--CCC-CCHHHHHHHHHhHhHH----hcCCCCcHHHHHHHHHHHhCcCHHHEEEcC
Confidence 467899999999999999998874 455 6899999998877432 234444447899999999987778999999
Q ss_pred ChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHH
Q 011777 163 SGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQD 242 (477)
Q Consensus 163 sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 242 (477)
||++|++.+++... ++.|++..++|++........+. .+..++.. .....+.
T Consensus 75 g~~~al~~~~~~l~----gd~Vi~~~p~~~~~~~~~~~~g~-----------~~~~v~~~-~~~~~~~------------ 126 (350)
T 3fkd_A 75 GPTAAFYQIAQAFR----GSRSLIAIPSFAEYEDACRMYEH-----------EVCFYPSN-EDIGEAD------------ 126 (350)
T ss_dssp HHHHHHHHHHHHTT----TCEEEEEESCCHHHHHHHHHTTC-----------EEEEEETT-SCGGGSC------------
T ss_pred CHHHHHHHHHHHHC----CCEEEEeCCCcHHHHHHHHHcCC-----------eEEEEecC-CccccCc------------
Confidence 99999999998654 67899999999987654433321 11222210 1000011
Q ss_pred HHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCC-ccccccCCCcceeeecc
Q 011777 243 HIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHY-WGFETQGVIPDIVTMAK 321 (477)
Q Consensus 243 ~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~-~~~~~~gv~pDivt~sK 321 (477)
..++++|+++..++++|.+. +.+.+++|.++|++ .++|+||+|++|++.+... ...+..+....+.+|||
T Consensus 127 ------~~~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~--~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK 197 (350)
T 3fkd_A 127 ------FSNMDFCWLCNPNNPDGRLL-QRTEILRLLNDHPD--TTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSH 197 (350)
T ss_dssp ------CTTCSEEEEESSCTTTCCCC-CHHHHHHHHHHCTT--SEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHH
T ss_pred ------cCCCCEEEEeCCCCCcCCCC-CHHHHHHHHHhCCC--CEEEEECchhhhccCcchhhHHhhcCCCEEEEecCch
Confidence 13556666666677788655 44445555555554 4999999999998776211 12223334445568999
Q ss_pred ccc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhc--hhhHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 011777 322 GIG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID--KERRQAHCADVGSHLLGRLRTLQERHDII 398 (477)
Q Consensus 322 ~lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~--~~~~~~~~~~~~~~l~~~L~~l~~~~~~~ 398 (477)
.++ .|+|+||+++++++++.+.... .+++.|+++++++.++|+..+ .+...+ ..++.+++.+.|++ ++.+
T Consensus 198 ~~~~~G~r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~l~~~L~~----~~~~ 270 (350)
T 3fkd_A 198 AYGIPGLRIGYIVANKDFMKRVAAFS--TPWAVNALAIEAAKFILIHPAQFTLPIRK-WQRNTVDFITALNR----LDGV 270 (350)
T ss_dssp HHSCGGGCCEEEECCHHHHHHHHTTC--CTTCSCHHHHHHHHHHHHCTTTTCCCHHH-HHHHHHHHHHHHHH----STTE
T ss_pred hccCcchheEeEEeCHHHHHHHHHhC--CCCCCCHHHHHHHHHHHhCHHHHHHHHHH-HHHHHHHHHHHHhc----CCCc
Confidence 999 7999999999999999887644 467889999999999998654 122333 33555666665544 4445
Q ss_pred eeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHH-cCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777 399 GDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRE-LGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYS 473 (477)
Q Consensus 399 ~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~ 473 (477)
...++.|.++++.+... ...++.+.|++ +||.+.++..+ .+++||+++ +++++++++++|+++
T Consensus 271 ~~~~~~~~~~~~~~~~~---------~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~---~~~~~~~l~~al~~~ 338 (350)
T 3fkd_A 271 EVHPSGTTFFLLRLKKG---------TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ---RPAQNQLFIKALETF 338 (350)
T ss_dssp EECCCSSSEEEEEESSS---------CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred EECCCCCcEEEEECCCC---------CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC---CHHHHHHHHHHHHHH
Confidence 45567788888777321 24578888988 99999987533 579999754 789999999999988
Q ss_pred Hhh
Q 011777 474 MSK 476 (477)
Q Consensus 474 l~~ 476 (477)
+++
T Consensus 339 ~~~ 341 (350)
T 3fkd_A 339 LEK 341 (350)
T ss_dssp HTC
T ss_pred HHH
Confidence 753
No 91
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.97 E-value=6.4e-30 Score=261.00 Aligned_cols=346 Identities=14% Similarity=0.092 Sum_probs=226.1
Q ss_pred EEEeecCCcccccCCCCCHHHHHHHHHHHh---------hccccccccCChH-HHHHHHHHHhhC----C----CCCCEE
Q 011777 97 RYLDAFAGIVTVSCGHCHPDVLNAIFEQSK---------LLQHATTIYLHHA-IADFAEALASKM----P----GNLKVV 158 (477)
Q Consensus 97 ~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~---------~~~~~~~~~~~~~-~~~l~~~La~~~----~----~~~~~v 158 (477)
.++||.++. +++| +|.+.+++.++.. ... ....|..+. ..++++.+++++ + .+.++|
T Consensus 37 ~~i~l~~~~--~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i 111 (428)
T 1iay_A 37 GVIQMGLAE--NQLC--LDLIEDWIKRNPKGSICSEGIKSFK-AIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERV 111 (428)
T ss_dssp SBEECSSCC--CCSS--HHHHHHHHHHCTTSSTTC----CHH-HHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSC
T ss_pred ceeeecccc--chhh--HHHHHHHHHhccccccccccccccH-hhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhE
Confidence 578887655 3555 4788888875421 000 011232221 344444444443 2 446789
Q ss_pred EEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHH
Q 011777 159 YFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQ 238 (477)
Q Consensus 159 ~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (477)
++++|+++|++.+++.+.. +++.|++.+++||++........ |...+.+|......+..| ++
T Consensus 112 ~~~~G~~~ai~~~~~~~~~--~gd~Vl~~~p~y~~~~~~~~~~~------------g~~~~~v~~~~~~~~~~d----~~ 173 (428)
T 1iay_A 112 VMAGGATGANETIIFCLAD--PGDAFLVPSPYYPAFNRDLRWRT------------GVQLIPIHCESSNNFKIT----SK 173 (428)
T ss_dssp EEEEHHHHHHHHHHHHHCC--TTCEEEEESSCCTTHHHHTTTTT------------CCEEEEECCCTTTTTCCC----HH
T ss_pred EEccChHHHHHHHHHHhCC--CCCeEEEccCCCcchHHHHHHhc------------CCEEEEeecCCccCCcCC----HH
Confidence 9999999999999997643 55789999999998754332221 222222222111122222 47
Q ss_pred HHHHHHhcc--CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc---ccc---
Q 011777 239 DLQDHIDFG--TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF---ETQ--- 310 (477)
Q Consensus 239 ~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~---~~~--- 310 (477)
++++.++.. ...++++|+++..++++|. .++++++++|.++|++||+++|+||+|++|+++|..+..+ ...
T Consensus 174 ~l~~~l~~~~~~~~~~~~v~l~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~ 252 (428)
T 1iay_A 174 AVKEAYENAQKSNIKVKGLILTNPSNPLGT-TLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEM 252 (428)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGG
T ss_pred HHHHHHHHHHhcCCceEEEEEcCCCCCCCC-cCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhcccccc
Confidence 777777521 2235777666656677775 5688999999999999999999999999987765222122 111
Q ss_pred -CCCcc----eeeeccccc-CccceEEEEe-CHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhc---h--hhHHHHHH
Q 011777 311 -GVIPD----IVTMAKGIG-NGLPLGAVVT-TPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID---K--ERRQAHCA 378 (477)
Q Consensus 311 -gv~pD----ivt~sK~lg-~G~pig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~---~--~~~~~~~~ 378 (477)
++.+| +.++||.+| +|+|+|++++ ++++++.+... ..+++.|+++++++.++|+..+ + ++..++++
T Consensus 253 ~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 330 (428)
T 1iay_A 253 TYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKM--SSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLG 330 (428)
T ss_dssp TTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHH--HTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHH--HhcccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 23366 558999998 7999999999 68888877643 2346789999999988887532 1 33455566
Q ss_pred HHHHHHHHHHHHHHHhCCCceeeec-cceeEEEEEeeCCCCCCccHHHHHHHHHHHHHc-CceeeccCCC----CCEEEE
Q 011777 379 DVGSHLLGRLRTLQERHDIIGDVRG-RGLMVGMELVTDRKEKTPAKAETAVLFEKLREL-GVLVGKGGLH----GNVFRI 452 (477)
Q Consensus 379 ~~~~~l~~~L~~l~~~~~~~~~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~----~~~iRi 452 (477)
++++++.+.|+++ +. ...++ .|+|+++++.... ..+......++.+.|+++ ||++.++..+ .+++||
T Consensus 331 ~~~~~l~~~L~~~----g~-~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRi 403 (428)
T 1iay_A 331 KRHKHFTNGLEVV----GI-KCLKNNAGLFCWMDLRPLL--RESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRV 403 (428)
T ss_dssp HHHHHHHHHHHHT----TC-CBCCCSSSSEEEEECGGGC--SSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEE
T ss_pred HHHHHHHHHHHhc----CC-cccCCCeeEEEEEechhhc--CCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEE
Confidence 6666666666554 22 22334 5788888874321 111122345788888876 9999987543 468999
Q ss_pred eCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 453 KPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 453 ~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
+++ .++++++++++++|++++++
T Consensus 404 s~~-~~~~e~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 404 CFA-NMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp ECS-SSCHHHHHHHHHHHHHHHHT
T ss_pred EEe-cCCHHHHHHHHHHHHHHHhc
Confidence 987 57999999999999998864
No 92
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.97 E-value=7.9e-30 Score=254.28 Aligned_cols=327 Identities=14% Similarity=0.109 Sum_probs=229.6
Q ss_pred CCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHH
Q 011777 93 ENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAM 172 (477)
Q Consensus 93 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al 172 (477)
.+|+.+|||.++.. .++ .+|+|++++.+++.........|..+...+++++|+++++.+.++|+|++||++|++.++
T Consensus 23 ~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~ 99 (360)
T 3hdo_A 23 PDIASWIKLNTNEN--PYP-PSPEVVKAILEELGPDGAALRIYPSASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLI 99 (360)
T ss_dssp SCCTTSEECSSCCC--SSC-CCHHHHHHHHHHHTTTCGGGGSCCCSSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHH
T ss_pred ccccceeeccCCCC--CCC-CCHHHHHHHHHHHhcccchhhcCCCCchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHH
Confidence 57889999998875 454 689999999999876421122344444578899999998766789999999999999999
Q ss_pred HHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCe
Q 011777 173 LMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKV 252 (477)
Q Consensus 173 ~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~ 252 (477)
+... .+++.|++..++|++........+. .+..++... .+. ++++++.. ++
T Consensus 100 ~~l~--~~gd~Vl~~~p~~~~~~~~~~~~g~-----------~~~~v~~~~----~~~---------~~~l~~~~---~~ 150 (360)
T 3hdo_A 100 RAFA--AEGEEIGYVHPSYSYYGTLAEVQGA-----------RVRTFGLTG----DFR---------IAGFPERY---EG 150 (360)
T ss_dssp HHHC--CTTCEEEEESSSCTHHHHHHHHHTC-----------EEEEECBCT----TSS---------BTTCCSSB---CS
T ss_pred HHHh--CCCCEEEEcCCChHHHHHHHHHCCC-----------EEEEeeCCC----CCC---------HHHHHhhc---CC
Confidence 8663 3567899999999987655443321 112222111 111 12222211 22
Q ss_pred eEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeeccccc-CccceEE
Q 011777 253 AGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIG-NGLPLGA 331 (477)
Q Consensus 253 a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg-~G~pig~ 331 (477)
++++++..++++|.+.+ +++|.++|+++|+++|+||+|++|...+ .....+..+....+.++||.++ +|+|+|+
T Consensus 151 ~~v~i~~p~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~ 225 (360)
T 3hdo_A 151 KVFFLTTPNAPLGPSFP----LEYIDELARRCAGMLVLDETYAEFAESN-ALELVRRHENVVVTRTLSKSYSLAGMRIGL 225 (360)
T ss_dssp SEEEEESSCTTTCCCCC----HHHHHHHHHHBSSEEEEECTTGGGSSCC-CTHHHHHCSSEEEEEESTTTTSCTTSCCEE
T ss_pred CEEEEeCCCCCCCCCcC----HHHHHHHHHHCCCEEEEECChHhhCCcc-hhHHhccCCCEEEEecchHhhcCCccceee
Confidence 35666666778887777 7889999999999999999999885333 2222234455566778999998 6899999
Q ss_pred EEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEE
Q 011777 332 VVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK-ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGM 410 (477)
Q Consensus 332 v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i 410 (477)
+++++++++.+.... .+++.|+++++++.++|+..+. ++..++++++.+++.+.|+++ + +...++.|.++++
T Consensus 226 ~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----~-~~~~~~~~~~~~~ 298 (360)
T 3hdo_A 226 AIARPEVIAALDKIR--DHYNLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSI----G-YDVIPSQGNYLFA 298 (360)
T ss_dssp EECCHHHHHHHHHHS--CSCCSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT----T-CEECCCSSSEEEE
T ss_pred EeeCHHHHHHHHHhC--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC----C-CEEcCCCccEEEE
Confidence 999999998887543 4578999999999999985211 234455555555555555443 3 3345667888887
Q ss_pred EEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC--CCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777 411 ELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL--HGNVFRIKPPMCFTKDDADFLVDALDYSMS 475 (477)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~ 475 (477)
.+.. ....++.+.|.++||++.+++. ..+++||+++ +++|+++++++|+++.+
T Consensus 299 ~~~~---------~~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~---~~~e~~~l~~al~~~~~ 353 (360)
T 3hdo_A 299 TPPD---------RDGKRVYDGLYARKVLVRHFSDPLLAHGMRISIG---TREEMEQTLAALKEIGE 353 (360)
T ss_dssp ECTT---------CCHHHHHHHHHHTTEECBCCCSTTTTTSEEEECC---CHHHHHHHHHHHHHHHC
T ss_pred ECCC---------CCHHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHhc
Confidence 6521 0245788889999999988643 2478999755 89999999999998764
No 93
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.97 E-value=8.7e-31 Score=267.61 Aligned_cols=341 Identities=11% Similarity=0.037 Sum_probs=227.6
Q ss_pred CEEEeecCCcccccCCCCCHHH--HHHHHHHHhhccccccccCCh-HHHHHHHHHHhhC-----CCCCCE---EEEeCCh
Q 011777 96 RRYLDAFAGIVTVSCGHCHPDV--LNAIFEQSKLLQHATTIYLHH-AIADFAEALASKM-----PGNLKV---VYFVNSG 164 (477)
Q Consensus 96 ~~ylD~~~g~~~~~lGh~~p~v--~~Av~~~l~~~~~~~~~~~~~-~~~~l~~~La~~~-----~~~~~~---v~~~~sG 164 (477)
+.++||..|.+. .+|+ +|.+ .+++.++++.. ....|... ...++++.+++++ +.+.++ |++|+||
T Consensus 47 ~~~i~l~~g~~~-~~~~-~~~~~~~~a~~~~~~~~--~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~ 122 (430)
T 2x5f_A 47 STTYNATIGMAT-NKDG-KMFASSLDAMFNDLTPD--EIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNAL 122 (430)
T ss_dssp TCSEECCCSSCE-ETTE-ECCCHHHHTTBSSCCGG--GTSSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHH
T ss_pred CCcEEeeeeecc-CCCC-chhhHHHHHHHHhcCcc--cccccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcCCc
Confidence 568999988864 6775 5666 77777665431 11123322 2455666666655 555677 9999999
Q ss_pred HHHHHHHHHHHHhccCCceEEEEccCccCCcccccc-cccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHH
Q 011777 165 TEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIG-LTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDH 243 (477)
Q Consensus 165 seA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~ 243 (477)
++|++.+++... .+++.|++.+++||++...... .+ ...+.+|..... +..| +++++++
T Consensus 123 ~~al~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~~g-------------~~~~~~~~~~~~-~~~d----~~~l~~~ 182 (430)
T 2x5f_A 123 THGLSLVGDLFV--NQDDTILLPEHNWGNYKLVFNTRNG-------------ANLQTYPIFDKD-GHYT----TDSLVEA 182 (430)
T ss_dssp HHHHHHHHHHHC--CTTCEEEEESSCCTHHHHHHTTTTC-------------CEEEEECCBCTT-SCBC----SHHHHHH
T ss_pred hHHHHHHHHHHh--CCCCEEEEcCCcCccHHHHHHHhcC-------------CeEEEEeccCcc-CCcC----HHHHHHH
Confidence 999999999763 2567899999999997655433 21 122222211100 1112 3788888
Q ss_pred HhccCCCCeeE-EEecccCCCCCeeeCCchhHHHHHHHHHH-----hCcEEEEcCcccCccCCCCCCccc--cccCCCcc
Q 011777 244 IDFGTSGKVAG-FIAETIQGVGGAVELAPGYLKLVYDIVRK-----AGGVCIADEVQTGFGRTGSHYWGF--ETQGVIPD 315 (477)
Q Consensus 244 i~~~~~~~~a~-vi~epi~~~~G~~~~~~~~l~~l~~l~~~-----~gillI~DEv~~gfgr~G~~~~~~--~~~gv~pD 315 (477)
++.. +.++++ ++++| +|++|. .++.+++++|.++|++ ||+++|+||+|++|.+.|..+..+ ...+..++
T Consensus 183 l~~~-~~~~~~v~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (430)
T 2x5f_A 183 LQSY-NKDKVIMILNYP-NNPTGY-TPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSN 259 (430)
T ss_dssp HHHC-CSSEEEEEECSS-CTTTCC-CCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCT
T ss_pred HHhc-CCCCEEEEEcCC-CCCCCC-cCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCC
Confidence 8632 225555 55555 777774 5688999999999999 999999999999998776212222 22122333
Q ss_pred ------eeeeccccc-CccceEEEEe---CHHHHHhhcccccc----cCCCCcHHHHHHHHHHHH-hhch-hh---HHHH
Q 011777 316 ------IVTMAKGIG-NGLPLGAVVT---TPEIANVMAQKIQF----NTFGGNPVCSAGGLAVLR-VIDK-ER---RQAH 376 (477)
Q Consensus 316 ------ivt~sK~lg-~G~pig~v~~---~~~~~~~~~~~~~~----~t~~~~~~~~aaa~a~l~-~l~~-~~---~~~~ 376 (477)
+.++||.++ +|+|+||+++ ++++++.+...... .+++.|+++++++.++|+ ...- +. ..++
T Consensus 260 ~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 339 (430)
T 2x5f_A 260 AILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQT 339 (430)
T ss_dssp TEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred cceEEEEEecccCCCCCCCCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 457899998 6999999999 99998888654433 678899999999999997 4311 11 3444
Q ss_pred HHHHHHHHHHHHHHHHHhCCCceeeecc-ceeEEEEEeeCCCCCCccHHHHHHHHHHHHH-cCceeeccCCCCCEEEEeC
Q 011777 377 CADVGSHLLGRLRTLQERHDIIGDVRGR-GLMVGMELVTDRKEKTPAKAETAVLFEKLRE-LGVLVGKGGLHGNVFRIKP 454 (477)
Q Consensus 377 ~~~~~~~l~~~L~~l~~~~~~~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~~~iRi~p 454 (477)
++++.+++.+.|++.....+ +....+. |+++++++. . ....++.+.|++ +||++.+++ .+++||++
T Consensus 340 ~~~~~~~l~~~L~~~~~~~g-~~~~~~~~g~~~~~~~~-~--------~~~~~~~~~l~~~~gi~v~~g~--~~~iRis~ 407 (430)
T 2x5f_A 340 LKERYEVTKEVVYADQYHSH-WQAYDFNSGYFMAIKVH-D--------VDPEALRKHLIDKYSIGVIALN--ATDIRIAF 407 (430)
T ss_dssp HHHHHHHHHHHHTCGGGTTT-EEECCCCBSSEEEEEES-S--------SCHHHHHHHHHHHHCEECEECS--SSEEEEEG
T ss_pred HHHHHHHHHHHHHhhCCCCC-ceeeCCCceEEEEeCCC-C--------CCHHHHHHHHHHhCCEEEecCC--CCeEEEEE
Confidence 44444455444432110223 2233343 566888873 1 014568888887 999999873 57899998
Q ss_pred CCCCcHHHHHHHHHHHHHHHhh
Q 011777 455 PMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 455 ~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
+. .+++++++++++|++++++
T Consensus 408 ~~-~~~e~i~~~~~~l~~~l~~ 428 (430)
T 2x5f_A 408 SC-VEKDDIPHVFDSIAKAIDD 428 (430)
T ss_dssp GG-SCGGGHHHHHHHHHHHHHH
T ss_pred ec-CCHHHHHHHHHHHHHHHHh
Confidence 85 4899999999999998865
No 94
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.97 E-value=1.4e-28 Score=248.73 Aligned_cols=333 Identities=19% Similarity=0.188 Sum_probs=231.4
Q ss_pred CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccc----ccc-CChHHHHHHHHHHhhCCCCCCEEEEeCChHHHH
Q 011777 94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHAT----TIY-LHHAIADFAEALASKMPGNLKVVYFVNSGTEAN 168 (477)
Q Consensus 94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~----~~~-~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~ 168 (477)
||++|+||.++.. ..+|+ +|+|.+++.+++++..... ..+ ..+...+++++|+++++. .+.++| ++|++++
T Consensus 44 ~g~~~i~~~~~~~-~~~~~-~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~-~~~i~~-~sG~~a~ 119 (401)
T 2bwn_A 44 GKQDITVWCGNDY-LGMGQ-HPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQK-EAALVF-SSAYNAN 119 (401)
T ss_dssp CEEEEEECSCSCT-TSGGG-CHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTC-SEEEEE-SCHHHHH
T ss_pred CCCcEEEeeCCCc-ccCCC-CHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCC-CcEEEE-CCcHHHH
Confidence 7899999987542 12333 7899999999998743211 112 346788999999999975 345555 7778899
Q ss_pred HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777 169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT 248 (477)
Q Consensus 169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~ 248 (477)
..+++++....+++.|++..+.|++....... . |...+.+|. + | .++++++++...
T Consensus 120 ~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~-~------------g~~~~~v~~------~-d----~~~le~~l~~~~ 175 (401)
T 2bwn_A 120 DATLSTLRVLFPGLIIYSDSLNHASMIEGIKR-N------------AGPKRIFRH------N-D----VAHLRELIAADD 175 (401)
T ss_dssp HHHHHHHHHHSTTCEEEEETTCCHHHHHHHHH-S------------CCCEEEECT------T-C----HHHHHHHHHHSC
T ss_pred HHHHHHHhcCCCCCEEEECchhhHHHHHHHHH-c------------CCeEEEEcC------C-C----HHHHHHHHHhhc
Confidence 99988643222456777777777655433211 1 122222221 1 1 478888887543
Q ss_pred CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc--CccCCCCCCccccccCC--Ccc--eeeeccc
Q 011777 249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT--GFGRTGSHYWGFETQGV--IPD--IVTMAKG 322 (477)
Q Consensus 249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~--gfgr~G~~~~~~~~~gv--~pD--ivt~sK~ 322 (477)
.+++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ .||++| ..+. ..+++ .+| +.++||+
T Consensus 176 ~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~g-~~~~-~~~~~~~~~~i~~~s~sK~ 249 (401)
T 2bwn_A 176 PAAPKLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRG-AGVA-ERDGLMHRIDIFNGTLAKA 249 (401)
T ss_dssp TTSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTS-CCHH-HHHTCGGGCSEEEEESSST
T ss_pred cCCceEEEEecCcCCCCCcCC----HHHHHHHHHHcCCEEEEeccccccccCCCC-ceee-eccCccccCcEEEeechhh
Confidence 346889999999999998776 8999999999999999999999 346666 3222 33343 234 4489999
Q ss_pred ccC-ccceEEEEeCHHHHHhhcccc--cccCCCCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCC
Q 011777 323 IGN-GLPLGAVVTTPEIANVMAQKI--QFNTFGGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERHD 396 (477)
Q Consensus 323 lg~-G~pig~v~~~~~~~~~~~~~~--~~~t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~ 396 (477)
++. | |++++++++++.+.... ...+.+.++++++++.++++.+++ ++..++++++.+++.+.|+++ ...
T Consensus 250 ~~~~G---G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~ 324 (401)
T 2bwn_A 250 YGVFG---GYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL--GMP 324 (401)
T ss_dssp TCSCC---EEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH--TCC
T ss_pred ccCCC---CEEecCHHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC--CCc
Confidence 984 6 89999999888765321 112334467889999999998765 467888888999999988876 333
Q ss_pred CceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC-----CCEEEEeCCCCCcHHHHHHHHHHH
Q 011777 397 IIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH-----GNVFRIKPPMCFTKDDADFLVDAL 470 (477)
Q Consensus 397 ~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~-----~~~iRi~p~~~~t~e~i~~~l~~l 470 (477)
.. ...|.++++.+. ......++.+.|+ ++||.+.++..+ .+++||+++..++++|+++++++|
T Consensus 325 ~~---~~~~~~~~~~~~--------~~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l 393 (401)
T 2bwn_A 325 II---DHGSHIVPVVIG--------DPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAM 393 (401)
T ss_dssp BC---CCSSSCEEEECC--------CHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHH
T ss_pred cc---CCCCCeEEEEeC--------ChHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHH
Confidence 22 234557777762 2234567888886 789999876421 258999999989999999999999
Q ss_pred HHHHhh
Q 011777 471 DYSMSK 476 (477)
Q Consensus 471 ~~~l~~ 476 (477)
++++++
T Consensus 394 ~~~~~~ 399 (401)
T 2bwn_A 394 DLLWAR 399 (401)
T ss_dssp HHHC--
T ss_pred HHHHHh
Confidence 998765
No 95
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.97 E-value=4.8e-30 Score=260.48 Aligned_cols=345 Identities=12% Similarity=0.038 Sum_probs=223.2
Q ss_pred CCCEEEeecCCcccccCCC--CCHHHHHHHHHHHhhcccccccc-CChHHHHHHHHHHhhCCC------CCCEEEE--eC
Q 011777 94 NGRRYLDAFAGIVTVSCGH--CHPDVLNAIFEQSKLLQHATTIY-LHHAIADFAEALASKMPG------NLKVVYF--VN 162 (477)
Q Consensus 94 dG~~ylD~~~g~~~~~lGh--~~p~v~~Av~~~l~~~~~~~~~~-~~~~~~~l~~~La~~~~~------~~~~v~~--~~ 162 (477)
+|+.++||..|.+..+.|| .+|.|.+++.+++..... ...| ......++++.++++++. +.++|+| |+
T Consensus 28 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~ 106 (412)
T 1ajs_A 28 PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSL-NHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSL 106 (412)
T ss_dssp CCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTC-CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEE
T ss_pred CCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhh-ccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECC
Confidence 3677899999886555555 358999999988732111 1122 233345666777666522 3578999 99
Q ss_pred ChHHHHHHHHHHHHhccCC-----ceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHH
Q 011777 163 SGTEANELAMLMARLSTGN-----LGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYA 237 (477)
Q Consensus 163 sGseA~~~Al~~ar~~~~~-----~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (477)
||++|++.++++++...++ +.|++..++||++.......+.. .+..++.. ....+..| +
T Consensus 107 gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~----------~~~~~~~~--~~~~~~~d----~ 170 (412)
T 1ajs_A 107 GGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFK----------DIRSYRYW--DTEKRGLD----L 170 (412)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCS----------CEEEEECE--ETTTTEEC----H
T ss_pred CcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcCCc----------eeEEEeee--cCCCCccC----H
Confidence 9999999998866544455 78999999999976654443221 01222210 00111112 4
Q ss_pred HHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCC--CCCccccccCCCcc
Q 011777 238 QDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTG--SHYWGFETQGVIPD 315 (477)
Q Consensus 238 ~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G--~~~~~~~~~gv~pD 315 (477)
+++++.++.. ..++.++++...++++| ..++.+++++|.++|++||+++|+||+|++|+++| ..++.+..+...+|
T Consensus 171 ~~l~~~l~~~-~~~~~~v~~~~p~nptG-~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~ 248 (412)
T 1ajs_A 171 QGFLSDLENA-PEFSIFVLHACAHNPTG-TDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGF 248 (412)
T ss_dssp HHHHHHHHHS-CTTCEEEEESSSCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTC
T ss_pred HHHHHHHHhC-CCCcEEEEECCCCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCC
Confidence 7788887632 22455665444455556 46788999999999999999999999999998865 12333332211233
Q ss_pred ----eeeecccccC-ccceEEEEe---CHHHHHh----hcccccccCCC-CcHHHHHHHHHHHHhhc--------hhhHH
Q 011777 316 ----IVTMAKGIGN-GLPLGAVVT---TPEIANV----MAQKIQFNTFG-GNPVCSAGGLAVLRVID--------KERRQ 374 (477)
Q Consensus 316 ----ivt~sK~lg~-G~pig~v~~---~~~~~~~----~~~~~~~~t~~-~~~~~~aaa~a~l~~l~--------~~~~~ 374 (477)
+.++||.++. |+|+||+++ ++++++. +... +..+++ .|+++++++.++|+..+ .++..
T Consensus 249 ~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 327 (412)
T 1ajs_A 249 ELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKI-VRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMA 327 (412)
T ss_dssp CEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHH-HHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cEEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHH-HhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHH
Confidence 5579999997 999999999 8874443 3321 334555 58999999999998642 13455
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeC
Q 011777 375 AHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKP 454 (477)
Q Consensus 375 ~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p 454 (477)
++++++++++.+.|+++..........+..|+++++.+ + ...+.+.+.++||++.++ +||++
T Consensus 328 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~--------~----~~~~~~~l~~~gv~v~~~------~Ris~ 389 (412)
T 1ajs_A 328 DRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGL--------N----PKQVEYLINQKHIYLLPS------GRINM 389 (412)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCC--------C----HHHHHHHHHTTCEECCTT------SEEEG
T ss_pred HHHHHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCC--------C----HHHHHHHHHhCCEEecCC------cEEEe
Confidence 66666677777766654100012111233455555433 1 234555667889999864 59987
Q ss_pred CCCCcHHHHHHHHHHHHHHHhhC
Q 011777 455 PMCFTKDDADFLVDALDYSMSKL 477 (477)
Q Consensus 455 ~~~~t~e~i~~~l~~l~~~l~~l 477 (477)
+. ++++++++++++|+++++++
T Consensus 390 ~~-~~~~~i~~~~~~l~~~l~~~ 411 (412)
T 1ajs_A 390 CG-LTTKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp GG-CCTTTHHHHHHHHHHHHHHC
T ss_pred ee-CCHHHHHHHHHHHHHHHHhc
Confidence 63 58999999999999998763
No 96
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.97 E-value=2.1e-29 Score=250.95 Aligned_cols=318 Identities=15% Similarity=0.158 Sum_probs=220.1
Q ss_pred CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHH
Q 011777 95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLM 174 (477)
Q Consensus 95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ 174 (477)
.+.+|||.+|. +++|++ |.+ ++ .. ...|+.+...++++.|+++++.+.++|++++|++||++.+++.
T Consensus 28 ~~~~i~l~~~~--~~~~~~-~~v--a~----~~----~~~Y~~~~~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~ 94 (356)
T 1fg7_A 28 GNGDVWLNANE--YPTAVE-FQL--TQ----QT----LNRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRA 94 (356)
T ss_dssp TTCSEECSSCC--CSSCCC-CCC--CC----CC----TTSCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHH
T ss_pred CCceEEeeCCC--CCCCCC-HhH--hh----hh----hccCCCccHHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHH
Confidence 35789998887 578874 555 21 11 2234444467899999999877778999999999999999997
Q ss_pred HHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeE
Q 011777 175 ARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAG 254 (477)
Q Consensus 175 ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~ 254 (477)
... .|+++|++..++||++.......+ ...+.+|.. ..+..| ++++++.++ ++++
T Consensus 95 ~~~-~g~d~Vl~~~p~~~~~~~~~~~~g-------------~~~~~v~~~--~~~~~d----~~~l~~~i~-----~~~~ 149 (356)
T 1fg7_A 95 FCE-PGKDAILYCPPTYGMYSVSAETIG-------------VECRTVPTL--DNWQLD----LQGISDKLD-----GVKV 149 (356)
T ss_dssp HCC-TTTCEEEECSSSCTHHHHHHHHHT-------------CEEEECCCC--TTSCCC----HHHHHTSCT-----TEEE
T ss_pred HhC-CCCCEEEEeCCChHHHHHHHHHcC-------------CEEEEeeCC--CCCCCC----HHHHHHHhc-----CCCE
Confidence 642 233789999999999876554332 122222211 112212 356665543 5667
Q ss_pred EEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc-cccCCCcceeeeccccc-CccceEEE
Q 011777 255 FIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF-ETQGVIPDIVTMAKGIG-NGLPLGAV 332 (477)
Q Consensus 255 vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~-~~~gv~pDivt~sK~lg-~G~pig~v 332 (477)
|+++..+|++|.+ .+.+++++|.++|+ ||+++|+||+|++|+... .++.+ +.++....+.++||.+| +|+|+||+
T Consensus 150 v~l~~p~nptG~~-~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~ 226 (356)
T 1fg7_A 150 VYVCSPNNPTGQL-INPQDFRTLLELTR-GKAIVVADEAYIEFCPQA-SLAGWLAEYPHLAILRTLSKAFALAGLRCGFT 226 (356)
T ss_dssp EEEESSCTTTCCC-CCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGG-CSGGGTTTCTTEEEEEESSSTTCCGGGCCEEE
T ss_pred EEEeCCCCCCCCC-CCHHHHHHHHHhCC-CCCEEEEEccchhhcCCC-cHHHHHhhCCCEEEEecchHhhcCchhhhEEE
Confidence 7777777888854 57889999999999 999999999999887432 33333 33344455668999999 79999999
Q ss_pred EeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhc---hhhHHHHHHHHHHHHHHHHHHHHHhCCC-ceeeeccceeE
Q 011777 333 VTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID---KERRQAHCADVGSHLLGRLRTLQERHDI-IGDVRGRGLMV 408 (477)
Q Consensus 333 ~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~---~~~~~~~~~~~~~~l~~~L~~l~~~~~~-~~~v~g~g~~~ 408 (477)
++++++++.+.... .+|+.|+++++++.++|+... -++..++++++++++.+.|++ ++. ....++.|.++
T Consensus 227 ~~~~~~~~~l~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~ 300 (356)
T 1fg7_A 227 LANEEVINLLMKVI--APYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKE----IPCVEQVFDSETNYI 300 (356)
T ss_dssp EECHHHHHHHHHHS--CSSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHH----STTEEEECCCSSSEE
T ss_pred EeCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHh----CCCceEECCCCCeEE
Confidence 99999988876532 456889999999998886432 123334444455555555544 442 23345678888
Q ss_pred EEEEeeCCCCCCccHHHHHHHHHHHHHcCceeec-cCCC--CCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777 409 GMELVTDRKEKTPAKAETAVLFEKLRELGVLVGK-GGLH--GNVFRIKPPMCFTKDDADFLVDALDYS 473 (477)
Q Consensus 409 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~-~~~~--~~~iRi~p~~~~t~e~i~~~l~~l~~~ 473 (477)
++++. ...++.+.|.++||++.+ +..+ .+++||+++ +++|+++++++|+++
T Consensus 301 ~~~~~-----------~~~~l~~~L~~~gI~v~~~g~~~~~~~~iRis~~---~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 301 LARFK-----------ASSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG---TREESQRVIDALRAE 354 (356)
T ss_dssp EEEET-----------THHHHHHHHHHTTEECEECTTSTTCTTEEEEECC---CHHHHHHHHHHHHTC
T ss_pred EEECC-----------CHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEeC---CHHHHHHHHHHHHhh
Confidence 88772 145688888999999998 5332 368999865 689999999998764
No 97
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.97 E-value=2.2e-29 Score=253.12 Aligned_cols=333 Identities=15% Similarity=0.094 Sum_probs=230.2
Q ss_pred CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccc----ccCC--hHHHHHHHHHHhhCCCCCCEEEEeCChHHH
Q 011777 94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT----IYLH--HAIADFAEALASKMPGNLKVVYFVNSGTEA 167 (477)
Q Consensus 94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~----~~~~--~~~~~l~~~La~~~~~~~~~v~~~~sGseA 167 (477)
++..|+|.. ..|+.+++|.+++.+++....+... .|.. +...++++.|+++++.+.++|++++||++|
T Consensus 15 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 88 (390)
T 1elu_A 15 ANKTYFNFG------GQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTG 88 (390)
T ss_dssp TTSEECCTT------TCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHH
T ss_pred CCeEEecCC------ccCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHH
Confidence 456677643 2578889999999999876432111 2333 567899999999998766789999999999
Q ss_pred HHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc
Q 011777 168 NELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG 247 (477)
Q Consensus 168 ~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~ 247 (477)
++.+++.++ ..++++|++.+++||+........... .|...+.++......+.. .++++++.++
T Consensus 89 ~~~~~~~~~-~~~gd~vl~~~~~~~~~~~~~~~~~~~---------~g~~~~~v~~~~~~~~~~----d~~~l~~~i~-- 152 (390)
T 1elu_A 89 CDIVLWGLD-WHQGDEILLTDCEHPGIIAIVQAIAAR---------FGITYRFFPVAATLNQGD----AAAVLANHLG-- 152 (390)
T ss_dssp HHHHHHHSC-CCTTCEEEEETTCCHHHHHHHHHHHHH---------HCCEEEEECCGGGSSSSC----HHHHHHTTCC--
T ss_pred HHHHHhCCC-CCCCCEEEEecCcccHHHHHHHHHHHH---------hCcEEEEEcCCCCCCccc----hHHHHHHhcC--
Confidence 999999764 245688999999999875432111000 011111222110001111 1466666664
Q ss_pred CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHH----HhCcEEEEcCcccCccCCCCCCccccccCCCcceee--ecc
Q 011777 248 TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVR----KAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAK 321 (477)
Q Consensus 248 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~----~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK 321 (477)
+++++|+++++++++|.+.+ +++|.++|+ +||+++|+||+|+ +|... . +.....+|+++ ++|
T Consensus 153 --~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~li~Dea~~-~g~~~---~--~~~~~~~d~~~~s~~K 220 (390)
T 1elu_A 153 --PKTRLVILSHLLWNTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-AGSLP---L--DFSRLEVDYYAFTGHK 220 (390)
T ss_dssp --TTEEEEEEESBCTTTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-BTTBC---C--CTTTSCCSEEEEESSS
T ss_pred --CCceEEEEeccccCCceecC----HHHHHHHHhhhhhhcCcEEEEEcccc-cCCcC---C--ChhhcCCCEEEccccc
Confidence 46889999999999997776 999999999 9999999999997 54332 1 22234567775 889
Q ss_pred cccCccceEEEEeCHHHHHhhcccc----------------------cccCCCCcHHHHHHHHHHHHhhchhh----HHH
Q 011777 322 GIGNGLPLGAVVTTPEIANVMAQKI----------------------QFNTFGGNPVCSAGGLAVLRVIDKER----RQA 375 (477)
Q Consensus 322 ~lg~G~pig~v~~~~~~~~~~~~~~----------------------~~~t~~~~~~~~aaa~a~l~~l~~~~----~~~ 375 (477)
.+.+|.++|++++++++++.+.... ...+.+.|+++++++.++++.+.+++ ..+
T Consensus 221 ~~~~~~g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~ 300 (390)
T 1elu_A 221 WFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQ 300 (390)
T ss_dssp TTCCCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred cccCCCceEEEEECHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8878888999999999887775421 11233567888888888888765543 455
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCceee---eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEE
Q 011777 376 HCADVGSHLLGRLRTLQERHDIIGDV---RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRI 452 (477)
Q Consensus 376 ~~~~~~~~l~~~L~~l~~~~~~~~~v---~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi 452 (477)
+++++.+++.+.|+++ +.+..+ ++.|.++.+++... ....++.+.|.++||.+.++. ..+++||
T Consensus 301 ~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~gi~v~~~~-~~~~iRi 367 (390)
T 1elu_A 301 AICQRSEFLWRGLNQL----PHVHCLATSAPQAGLVSFTVDSP--------LGHRAIVQKLEEQRIYLRTIA-DPDCIRA 367 (390)
T ss_dssp HHHHHHHHHHHHHHHS----TTEEESCSSCCSSSEEEEEECSS--------SCHHHHHHHHHHTTEECEEET-TTTEEEE
T ss_pred HHHHHHHHHHHHHHhc----CCcEEecCccccccEEEEEcCCC--------CCHHHHHHHHHHCCEEEEecC-CCCeEEE
Confidence 6666666666666553 222222 45688888877311 114568888899999999874 3579999
Q ss_pred eCCCCCcHHHHHHHHHHHHHH
Q 011777 453 KPPMCFTKDDADFLVDALDYS 473 (477)
Q Consensus 453 ~p~~~~t~e~i~~~l~~l~~~ 473 (477)
+++..++++|+++++++|+++
T Consensus 368 s~~~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 368 CCHYITDEEEINHLLARLADF 388 (390)
T ss_dssp ECCTTCCHHHHHHHHHHHTTC
T ss_pred ecccCCCHHHHHHHHHHHHhh
Confidence 999999999999999998753
No 98
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.97 E-value=2.3e-29 Score=251.26 Aligned_cols=327 Identities=11% Similarity=0.068 Sum_probs=229.4
Q ss_pred CEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHH
Q 011777 96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMA 175 (477)
Q Consensus 96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~a 175 (477)
+.+|||.++.. +++ .+|+|++++.++++... .|..+...+++++|+++++.+.++|++++||++|++.+++..
T Consensus 30 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~----~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l 102 (365)
T 3get_A 30 KEVIKLASNEN--PFG-TPPKAIECLRQNANKAH----LYPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSK 102 (365)
T ss_dssp SCCEECSSCCC--TTC-SCHHHHHHHHHHGGGTT----SCCCTTCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH
T ss_pred CceEEecCCCC--CCC-CCHHHHHHHHHHHHhhc----cCCCCChHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHH
Confidence 67899988764 466 68999999999887422 233333368899999998776789999999999999999876
Q ss_pred HhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEE
Q 011777 176 RLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGF 255 (477)
Q Consensus 176 r~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~v 255 (477)
. .++++|++..++|+++.......+ ...+.+|. . .++. ..++++++.++ +++++|
T Consensus 103 ~--~~gd~vl~~~~~~~~~~~~~~~~g-------------~~~~~v~~-~----~~~~-~d~~~l~~~l~----~~~~~v 157 (365)
T 3get_A 103 L--NSKNAFLQAGVTFAMYEIYAKQCG-------------AKCYKTQS-I----THNL-DEFKKLYETHK----DEIKLI 157 (365)
T ss_dssp C--CTTCEEEECSSCCTHHHHHHHHHT-------------CEEEECSS-S----SCCH-HHHHHHHHHTT----TTEEEE
T ss_pred h--CCCCEEEEeCCChHHHHHHHHHcC-------------CEEEEEec-C----CCCC-CCHHHHHHHhC----CCCCEE
Confidence 3 356889999999987755443332 22222221 0 1122 33577877775 467888
Q ss_pred EecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccC--CCCCCccc----cccCCCcceeeeccccc-Cccc
Q 011777 256 IAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGR--TGSHYWGF----ETQGVIPDIVTMAKGIG-NGLP 328 (477)
Q Consensus 256 i~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr--~G~~~~~~----~~~gv~pDivt~sK~lg-~G~p 328 (477)
+++..++++|.+. +.+.+++|.++| ++|+++|+||+|++|.+ .+...... +..+....+.++||.++ .|+|
T Consensus 158 ~~~~p~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r 235 (365)
T 3get_A 158 FLCLPNNPLGECL-DASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLR 235 (365)
T ss_dssp EEESSCTTTCCCC-CHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTC
T ss_pred EEcCCCCCCCCCc-CHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchh
Confidence 8776677777554 666677777777 67999999999998763 22122211 22344455568999998 6999
Q ss_pred eEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeecccee
Q 011777 329 LGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK-ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLM 407 (477)
Q Consensus 329 ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~ 407 (477)
+|++++++++++.+.... .+++.|+++++++.++|+..+. ++..++++++.+++.+.|++ ++ +...++.|.+
T Consensus 236 ~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~----~g-~~~~~~~~~~ 308 (365)
T 3get_A 236 IGYGIANANIISAFYKLR--APFNVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKK----HN-IKIIDSYTNF 308 (365)
T ss_dssp CEEEEECHHHHHHHHHHS--CTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH----TT-CEECCCSSSE
T ss_pred eEEEEcCHHHHHHHHHhc--CCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh----CC-CEECCCCCeE
Confidence 999999999998887543 3567899999999999874211 23344444445555554444 33 3345667888
Q ss_pred EEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC-CCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777 408 VGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH-GNVFRIKPPMCFTKDDADFLVDALDYSMS 475 (477)
Q Consensus 408 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-~~~iRi~p~~~~t~e~i~~~l~~l~~~l~ 475 (477)
+++.+... ...++.+.|.++||.+.++..+ .+++||+++ +++|+++++++|+++++
T Consensus 309 ~~~~~~~~---------~~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~---~~~~i~~l~~~l~~~l~ 365 (365)
T 3get_A 309 ITYFFDEK---------NSTDLSEKLLKKGIIIRNLKSYGLNAIRITIG---TSYENEKFFTEFDKILR 365 (365)
T ss_dssp EEEECSSS---------CHHHHHHHHHTTTEECEECGGGTCSEEEEECC---CHHHHHHHHHHHHHHHC
T ss_pred EEEECCCC---------CHHHHHHHHHHCCEEEEECccCCCCEEEEEcC---CHHHHHHHHHHHHHHhC
Confidence 88776321 2457888999999999987544 489999765 89999999999998763
No 99
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.97 E-value=3.8e-30 Score=259.67 Aligned_cols=345 Identities=13% Similarity=0.045 Sum_probs=215.0
Q ss_pred EEeCCCCEEEeecCCcccccCC--CCCHHHHHHHHHHHhhcccccccc-CChHHHHHHHHHHhhCC------CCCCEEEE
Q 011777 90 LFDENGRRYLDAFAGIVTVSCG--HCHPDVLNAIFEQSKLLQHATTIY-LHHAIADFAEALASKMP------GNLKVVYF 160 (477)
Q Consensus 90 ~~d~dG~~ylD~~~g~~~~~lG--h~~p~v~~Av~~~l~~~~~~~~~~-~~~~~~~l~~~La~~~~------~~~~~v~~ 160 (477)
+.+..|+.+|||..|.+..+.| +.+|+|.+++.+++++.. ...| ......++++.+++++. .+.++|+|
T Consensus 20 ~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~ 97 (396)
T 2q7w_A 20 FRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET--TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRART 97 (396)
T ss_dssp --------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCC--CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEE
T ss_pred HhccCCCCceecccccccCCCCCccCcHHHHHHHHhhcCccc--ccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEE
Confidence 3344567899999998766666 567999999999876531 1122 23334566666666541 12467888
Q ss_pred --eCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHH
Q 011777 161 --VNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQ 238 (477)
Q Consensus 161 --~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (477)
++||++|++.++++++...+++.|++.+++||++.......+.. +..++.. ....+..| ++
T Consensus 98 ~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~-----------~~~~~~~--~~~~~~~d----~~ 160 (396)
T 2q7w_A 98 AQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLE-----------VREYAYY--DAENHTLD----FD 160 (396)
T ss_dssp EEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCE-----------EEEEECE--ETTTTEEC----HH
T ss_pred EecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCCc-----------eEEEecc--cCCCCCcC----HH
Confidence 99999999999998765557789999999999986655443221 1122210 00011111 57
Q ss_pred HHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCC-CCCccccccCCCcc--
Q 011777 239 DLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTG-SHYWGFETQGVIPD-- 315 (477)
Q Consensus 239 ~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G-~~~~~~~~~gv~pD-- 315 (477)
++++.++.. ..+++++++...++++|. .++.+++++|.++|++||+++|+||+|++|+++| ...+.+..+...+|
T Consensus 161 ~l~~~l~~~-~~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (396)
T 2q7w_A 161 ALINSLNEA-QAGDVVLFHGCCHNPTGI-DPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKEL 238 (396)
T ss_dssp HHHHHHTTC-CTTCEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCE
T ss_pred HHHHHHHhC-CCCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcE
Confidence 888888632 123566665556666674 6688999999999999999999999999997753 01223332211122
Q ss_pred --eeeeccccc-CccceEEEEe---CHH----HHHhhcccccccCCCCcHHHHHHHHHHHHhhc--------hhhHHHHH
Q 011777 316 --IVTMAKGIG-NGLPLGAVVT---TPE----IANVMAQKIQFNTFGGNPVCSAGGLAVLRVID--------KERRQAHC 377 (477)
Q Consensus 316 --ivt~sK~lg-~G~pig~v~~---~~~----~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~--------~~~~~~~~ 377 (477)
+.++||.++ +|+|+||+++ +++ +++.+.......+.+.|+++++++.++|+... -++..+++
T Consensus 239 i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~ 318 (396)
T 2q7w_A 239 IVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRI 318 (396)
T ss_dssp EEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHH
T ss_pred EEEEeccccccccccccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHH
Confidence 447899999 6999999997 563 44444332222233458999999998887531 12233445
Q ss_pred HHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCC
Q 011777 378 ADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMC 457 (477)
Q Consensus 378 ~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~ 457 (477)
+++.+++.+.|+++....+.....+..|+++++.+ + ...+.+.+.++||++.++ +||+++.
T Consensus 319 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~--------~----~~~~~~~l~~~gv~v~~~------~Ris~~~- 379 (396)
T 2q7w_A 319 QRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGL--------T----KEQVLRLREEFGVYAVAS------GRVNVAG- 379 (396)
T ss_dssp HHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCC--------C----HHHHHHHHHHHCEECCTT------CEEEGGG-
T ss_pred HHHHHHHHHHHHhcCCCCCcceecCCCceEEEecC--------C----HHHHHHHHHhcCeeecCC------ceEEEee-
Confidence 55555555555543100002111223356656543 1 134666777899999863 5998875
Q ss_pred CcHHHHHHHHHHHHHHH
Q 011777 458 FTKDDADFLVDALDYSM 474 (477)
Q Consensus 458 ~t~e~i~~~l~~l~~~l 474 (477)
.+++++++++++|++++
T Consensus 380 ~~~e~i~~~~~~l~~~l 396 (396)
T 2q7w_A 380 MTPDNMAPLCEAIVAVL 396 (396)
T ss_dssp CCTTTHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHhcC
Confidence 48999999999998764
No 100
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.97 E-value=1.1e-28 Score=248.50 Aligned_cols=342 Identities=13% Similarity=0.052 Sum_probs=226.1
Q ss_pred CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccc--cccccCChHHHHHHHHHHhhCC--CCCCEEEEeCChHHHHH
Q 011777 94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH--ATTIYLHHAIADFAEALASKMP--GNLKVVYFVNSGTEANE 169 (477)
Q Consensus 94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~--~~~~~~~~~~~~l~~~La~~~~--~~~~~v~~~~sGseA~~ 169 (477)
+|+.++||..|.. .++ .+|.+.+++.++++.... ....+..+.+..+++.+....+ .+.++|++|+||++|++
T Consensus 29 ~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~ 105 (385)
T 1b5p_A 29 QGVDLVALTAGEP--DFD-TPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALF 105 (385)
T ss_dssp TTCCCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEEecCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHH
Confidence 3556788877764 344 368999999988865321 1111234456666666665444 34578999999999999
Q ss_pred HHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCC
Q 011777 170 LAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTS 249 (477)
Q Consensus 170 ~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~ 249 (477)
.+++... .+++.|++..++|+++....... |...+.+|......+..| .++++++++
T Consensus 106 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~l~---- 162 (385)
T 1b5p_A 106 NLFQAIL--DPGDEVIVLSPYWVSYPEMVRFA-------------GGVVVEVETLPEEGFVPD----PERVRRAIT---- 162 (385)
T ss_dssp HHHHHHC--CTTCEEEEEESCCTHHHHHHHHT-------------TCEEEEEECCGGGTTCCC----HHHHHTTCC----
T ss_pred HHHHHhc--CCCCEEEEcCCCchhHHHHHHHc-------------CCEEEEeecCcccCCCCC----HHHHHHhcC----
Confidence 9998663 36678999999998765443322 222222222110112212 467777664
Q ss_pred CCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccccc--CCCcceeeeccccc-Cc
Q 011777 250 GKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ--GVIPDIVTMAKGIG-NG 326 (477)
Q Consensus 250 ~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~--gv~pDivt~sK~lg-~G 326 (477)
.++++|++...+|++| ..++++.+++|.++|++||++||+||+|+.|.+.| ....+... +....+.+|||.++ .|
T Consensus 163 ~~~~~v~~~~p~NPtG-~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~i~~~s~SK~~~~~G 240 (385)
T 1b5p_A 163 PRTKALVVNSPNNPTG-AVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG-EHFSPGRVAPEHTLTVNGAAKAFAMTG 240 (385)
T ss_dssp TTEEEEEEESSCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS-CCCCGGGTCTTTEEEEEESTTTTTCGG
T ss_pred CCCEEEEEeCCCCCCC-CCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCCHHHcCCCCEEEEEechhhcCCcc
Confidence 3466555544455666 45588999999999999999999999999886655 33333222 22223447999999 69
Q ss_pred cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHh---hch--hhHHHHHHHHHHHHHHHHHHHHHhCCCceee
Q 011777 327 LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRV---IDK--ERRQAHCADVGSHLLGRLRTLQERHDIIGDV 401 (477)
Q Consensus 327 ~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~---l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v 401 (477)
+|+||+++++++++.+......++++.+.+++.++.++|+. ..+ ++..++++++.+++.+.|+++ +.....
T Consensus 241 ~RiG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~ 316 (385)
T 1b5p_A 241 WRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL----GLKAVR 316 (385)
T ss_dssp GCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TCCBCC
T ss_pred cceEEEEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC----CCeecC
Confidence 99999999999988887655556778899999999888864 222 334556666666777766664 221112
Q ss_pred eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC--CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 402 RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH--GNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 402 ~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
...|.++++.+... .....++.+.|.++||.+.++..+ .+++||+.. .+++++++++++|.+++++
T Consensus 317 ~~~~~~~~~~~~~~-------~~~~~~l~~~l~~~gv~v~~g~~f~~~~~iRis~~--~~~~~i~~~l~~l~~~l~~ 384 (385)
T 1b5p_A 317 PSGAFYVLMDTSPI-------APDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYA--TSEENLRKALERFARVLGR 384 (385)
T ss_dssp CSBTTEEEEECTTT-------CSSHHHHHHHHHHTTEECEESGGGTCTTEEEEECC--SCHHHHHHHHHHGGGGC--
T ss_pred CCeeEEEEEecCCC-------CCCHHHHHHHHHHCCeEEecccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHhh
Confidence 22345566665210 012456888888999999987543 479999765 7899999999999887653
No 101
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=3.1e-28 Score=244.89 Aligned_cols=321 Identities=14% Similarity=0.079 Sum_probs=223.0
Q ss_pred CCCHHHHHHHHHHHhhcccccccc--CChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc-----------
Q 011777 112 HCHPDVLNAIFEQSKLLQHATTIY--LHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS----------- 178 (477)
Q Consensus 112 h~~p~v~~Av~~~l~~~~~~~~~~--~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~----------- 178 (477)
..+|++.+++.+++.........+ ..+...+++++++++++.+.++++|++||++|++.+++.++..
T Consensus 41 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~ 120 (397)
T 3f9t_A 41 NVLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSK 120 (397)
T ss_dssp CCCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccC
Confidence 468999999999887532211122 2455678999999999887789999999999999999988764
Q ss_pred cCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEec
Q 011777 179 TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAE 258 (477)
Q Consensus 179 ~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~e 258 (477)
++++.|++.+++|+++.......+. .+..++... ...++ .++|+++++. .++++|+++
T Consensus 121 ~~gd~vl~~~~~~~~~~~~~~~~g~-----------~~~~v~~~~--~~~~d------~~~l~~~i~~---~~~~~v~~~ 178 (397)
T 3f9t_A 121 NEHPKIIVPITAHFSFEKGREMMDL-----------EYIYAPIKE--DYTID------EKFVKDAVED---YDVDGIIGI 178 (397)
T ss_dssp CSSCEEEEETTCCTHHHHHHHHHTC-----------EEEEECBCT--TSSBC------HHHHHHHHHH---SCCCEEEEE
T ss_pred CCCeEEEECCcchhHHHHHHHHcCc-----------eeEEEeeCC--CCcCC------HHHHHHHHhh---cCCeEEEEE
Confidence 2467899999998886544333211 122222211 11112 5888888872 156777777
Q ss_pred ccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccC--CCC--------CCccccccCCCcceeeecccccCccc
Q 011777 259 TIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGR--TGS--------HYWGFETQGVIPDIVTMAKGIGNGLP 328 (477)
Q Consensus 259 pi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr--~G~--------~~~~~~~~gv~pDivt~sK~lg~G~p 328 (477)
+.++++|.+.+ +++|.++|++||+++|+||+|+++.. ++. ..+.++. ++.+.+.+++|.+++|++
T Consensus 179 ~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~ 253 (397)
T 3f9t_A 179 AGTTELGTIDN----IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIP 253 (397)
T ss_dssp BSCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSS
T ss_pred CCCCCCCCCCC----HHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCCC
Confidence 77788887766 99999999999999999999987532 330 1333344 666666678899888899
Q ss_pred eEEEEeCHH-HHHhhccc---cc--------ccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCC
Q 011777 329 LGAVVTTPE-IANVMAQK---IQ--------FNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHD 396 (477)
Q Consensus 329 ig~v~~~~~-~~~~~~~~---~~--------~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~ 396 (477)
+|+++++++ +.+.+... .. +.+.+.+++++.++++.+.....++..++.+++.+++.+.|+++ ...
T Consensus 254 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~ 331 (397)
T 3f9t_A 254 SGGILFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKEN--NFK 331 (397)
T ss_dssp CEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCC
T ss_pred ceEEEEeCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHC--CCE
Confidence 999988655 44443221 11 12223466777777766654333567778888888888888776 333
Q ss_pred CceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777 397 IIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMS 475 (477)
Q Consensus 397 ~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~ 475 (477)
.+. .+.+.++++.+. . ..++.+.|.++||++.++. ..+++||+++..++++++++++++|+++++
T Consensus 332 ~~~--~~~~~~~~~~~~--------~---~~~~~~~l~~~gi~v~~~~-~~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 332 PVI--EPILNIVAIEDE--------D---YKEVCKKLRDRGIYVSVCN-CVKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp BSS--CCSSSEEEEECT--------T---HHHHHHHHHHTTCBCEECS-SSSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred EEc--CCCccEEEEEeC--------C---HHHHHHHHHhCCeEEeccC-CCCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 222 244566666541 1 4578889999999998864 358999999999999999999999999875
No 102
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.97 E-value=1.8e-29 Score=255.50 Aligned_cols=335 Identities=13% Similarity=0.070 Sum_probs=224.6
Q ss_pred CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccc--ccccC-ChHHHHHHHHHHhhC--C-CCCCEEEEeCChHHHH
Q 011777 95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA--TTIYL-HHAIADFAEALASKM--P-GNLKVVYFVNSGTEAN 168 (477)
Q Consensus 95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~--~~~~~-~~~~~~l~~~La~~~--~-~~~~~v~~~~sGseA~ 168 (477)
|+.+|||..+.. .++ .+|.+.+++.++++..... ...|. .....++++.+++++ + .+.++|++++|+++|+
T Consensus 32 ~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al 108 (400)
T 3asa_A 32 QHTVINLSIGDT--TQP-LNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDL 108 (400)
T ss_dssp TSCCEECSSCCC--CCC-CCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHH
T ss_pred CCceEeccCCCC--CCC-CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHH
Confidence 678999988764 343 6899999999998764321 12232 334678889999883 4 4567899999999999
Q ss_pred HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777 169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT 248 (477)
Q Consensus 169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~ 248 (477)
+.++++. .++++|++.+++|+++.......+. . .+..++.. ....+. .++++ .
T Consensus 109 ~~~~~~~---~~gd~Vl~~~p~y~~~~~~~~~~g~-~---------~~~~~~~~--~~~~~~-------~~l~~----~- 161 (400)
T 3asa_A 109 FRLLSFF---GPNQTVAIQDPSYPAYLDIARLTGA-K---------EIIALPCL--QENAFF-------PEFPE----D- 161 (400)
T ss_dssp HHHHHHH---CSSCEEEEEESCCHHHHHHHHHTTC-S---------EEEEEECC--GGGTTC-------CCCCT----T-
T ss_pred HHHHHHc---CCCCEEEECCCCcHHHHHHHHHcCC-c---------ceEecccc--hhcCcc-------cChhh----c-
Confidence 9876543 4568899999999987654322211 0 01222211 011111 11111 1
Q ss_pred CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccC----CCcceeeeccccc
Q 011777 249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQG----VIPDIVTMAKGIG 324 (477)
Q Consensus 249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~g----v~pDivt~sK~lg 324 (477)
+++++|++++.++++|. .++.+++++|.++|++||+++|+||+|++|++.|.....+..++ ....+.++||.+|
T Consensus 162 -~~~~~v~l~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g 239 (400)
T 3asa_A 162 -THIDILCLCSPNNPTGT-VLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLG 239 (400)
T ss_dssp -CCCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGT
T ss_pred -cCccEEEEeCCCCCCCC-cCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcC
Confidence 35667777666777785 46889999999999999999999999999977662122222222 2234668999998
Q ss_pred -CccceEEEEeCHHH-------HHhhcccccccCC-CCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhC
Q 011777 325 -NGLPLGAVVTTPEI-------ANVMAQKIQFNTF-GGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERH 395 (477)
Q Consensus 325 -~G~pig~v~~~~~~-------~~~~~~~~~~~t~-~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~ 395 (477)
+|+|+||+++++++ ++.+....+..++ +.|+++++++.++|+....++..++++++++++.+.|+++
T Consensus 240 ~~GlriG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~---- 315 (400)
T 3asa_A 240 FAGIRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLAT---- 315 (400)
T ss_dssp TTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHT----
T ss_pred CcchheeEEeeChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHC----
Confidence 79999999999887 5554332233445 5789999999999886534567788888888888887764
Q ss_pred CCceeeec-cceeEEEE-EeeCCCCCCccHHHHHHHHHHHHH-cCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHH
Q 011777 396 DIIGDVRG-RGLMVGME-LVTDRKEKTPAKAETAVLFEKLRE-LGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVD 468 (477)
Q Consensus 396 ~~~~~v~g-~g~~~~i~-~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~ 468 (477)
+. ....+ .|++++++ +.... ...++.+.|++ +||++.++..+ .+++||+ +..++++++++++
T Consensus 316 g~-~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis--~~~~~e~i~~~l~ 384 (400)
T 3asa_A 316 GF-EVFGGEHAPYLWVKPTQANI--------SDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFS--SLGKREDILAACE 384 (400)
T ss_dssp TC-EEEECSSSSEEEEECCCTTC--------CTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEE--CCSCHHHHHHHHH
T ss_pred CC-eeeCCCCceEEEEeccCCCC--------CHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEE--eeCCHHHHHHHHH
Confidence 32 22333 47788887 52110 11246666664 59999987432 4689997 5789999999999
Q ss_pred HHHHHHhh
Q 011777 469 ALDYSMSK 476 (477)
Q Consensus 469 ~l~~~l~~ 476 (477)
+|++++++
T Consensus 385 ~l~~~~~~ 392 (400)
T 3asa_A 385 RLQMAPAL 392 (400)
T ss_dssp HHHC----
T ss_pred HHHHHHHh
Confidence 99988764
No 103
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.97 E-value=2.2e-28 Score=247.00 Aligned_cols=323 Identities=15% Similarity=0.072 Sum_probs=221.6
Q ss_pred CCCCHHHHHHHHHHHhhcc---cccc----ccCChHHHHHHHHHHhhCCC-CCCEEEEeCChHHHHHHHHHHHHh--ccC
Q 011777 111 GHCHPDVLNAIFEQSKLLQ---HATT----IYLHHAIADFAEALASKMPG-NLKVVYFVNSGTEANELAMLMARL--STG 180 (477)
Q Consensus 111 Gh~~p~v~~Av~~~l~~~~---~~~~----~~~~~~~~~l~~~La~~~~~-~~~~v~~~~sGseA~~~Al~~ar~--~~~ 180 (477)
|+.+|++.+++.+++++.. +... ....+...+++++|+++++. +.+.|+|++||++|++.+++.++. ..+
T Consensus 33 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~ 112 (406)
T 1kmj_A 33 AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRA 112 (406)
T ss_dssp CCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCT
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhhhhcCCC
Confidence 4689999999999998642 1110 01245578999999999987 567899999999999999998742 346
Q ss_pred CceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEeccc
Q 011777 181 NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETI 260 (477)
Q Consensus 181 ~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi 260 (477)
+++|++.+++||+............. ..+..++... .... | +++|+++++ +++++|+++++
T Consensus 113 gd~vl~~~~~~~~~~~~~~~~~~~~g-------~~~~~~~~~~--~~~~--d----~~~l~~~l~----~~~~~v~~~~~ 173 (406)
T 1kmj_A 113 GDNIIISQMEHHANIVPWQMLCARVG-------AELRVIPLNP--DGTL--Q----LETLPTLFD----EKTRLLAITHV 173 (406)
T ss_dssp TCEEEEETTCCGGGTHHHHHHHHHHT-------CEEEEECBCT--TSCB--C----GGGHHHHCC----TTEEEEEEESB
T ss_pred CCEEEEecccchHHHHHHHHHHHhCC-------CEEEEEecCC--CCCc--C----HHHHHHHhc----cCCeEEEEeCC
Confidence 78899999999987543221110000 0112222111 1111 1 367887775 46899999999
Q ss_pred CCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCccee--eecccccCccceEEEEeCHHH
Q 011777 261 QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGNGLPLGAVVTTPEI 338 (477)
Q Consensus 261 ~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~G~pig~v~~~~~~ 338 (477)
++++|.+.+ +++|.++|++||+++|+||+|+. |.. .+.... ..+|++ +++|.+|. ..+|++++++++
T Consensus 174 ~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~-g~~---~~~~~~--~~~d~~~~s~~K~~g~-~G~G~~~~~~~~ 242 (406)
T 1kmj_A 174 SNVLGTENP----LAEMITLAHQHGAKVLVDGAQAV-MHH---PVDVQA--LDCDFYVFSGHKLYGP-TGIGILYVKEAL 242 (406)
T ss_dssp CTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTT-TTS---CCCHHH--HTCSEEEEEGGGTTSC-TTCEEEEECHHH
T ss_pred CccccCcCC----HHHHHHHHHHcCCEEEEEchhhc-CCC---CCcccc--cCCCEEEEEchhccCC-CCcEEEEEeHHH
Confidence 999998776 99999999999999999999973 322 122222 246765 58999953 238999999999
Q ss_pred HHhhccccccc---------------------CCCCcHHHHHHHH-HHHHhhch---hhHHHHHHHHHHHHHHHHHHHHH
Q 011777 339 ANVMAQKIQFN---------------------TFGGNPVCSAGGL-AVLRVIDK---ERRQAHCADVGSHLLGRLRTLQE 393 (477)
Q Consensus 339 ~~~~~~~~~~~---------------------t~~~~~~~~aaa~-a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~ 393 (477)
++.+.....++ +.+.+++.+++++ ++++.+.+ +++.++++++.+++.+.|+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-- 320 (406)
T 1kmj_A 243 LQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESV-- 320 (406)
T ss_dssp HHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTS--
T ss_pred HhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcC--
Confidence 98876543221 1334556666555 77877654 345666666677776666543
Q ss_pred hCCCceeeec--cceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC--------C--CCEEEEeCCCCCcHH
Q 011777 394 RHDIIGDVRG--RGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL--------H--GNVFRIKPPMCFTKD 461 (477)
Q Consensus 394 ~~~~~~~v~g--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--------~--~~~iRi~p~~~~t~e 461 (477)
+.+..... .|.++.+.+. . . ...++.+.|.++||.+.++.. + .+++||+++..+|++
T Consensus 321 --~~~~~~~~~~~~~~~~~~~~-~-----~---~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t~~ 389 (406)
T 1kmj_A 321 --PDLTLYGPQNRLGVIAFNLG-K-----H---HAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHE 389 (406)
T ss_dssp --TTEEEESCTTCCSEEEEEET-T-----C---CHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHH
T ss_pred --CCeEEecCCCcCCEEEEEEC-C-----C---CHHHHHHHHhhCCcEEEeccccchHHHHhcCCCCeEEEEeecCCCHH
Confidence 32333333 6778777752 1 0 134677889999999987641 1 479999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 011777 462 DADFLVDALDYSMSK 476 (477)
Q Consensus 462 ~i~~~l~~l~~~l~~ 476 (477)
|+++++++|+++++.
T Consensus 390 ~i~~~~~~l~~~~~~ 404 (406)
T 1kmj_A 390 EVDRLVTGLQRIHRL 404 (406)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998764
No 104
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.97 E-value=1e-29 Score=256.43 Aligned_cols=340 Identities=15% Similarity=0.126 Sum_probs=222.6
Q ss_pred CCCEEEeecCCcccccCC--CCCHHHHHHHHHHHhhccccccccC-ChHHHHHHHHHHhhC-CC--CCCEEEE--eCChH
Q 011777 94 NGRRYLDAFAGIVTVSCG--HCHPDVLNAIFEQSKLLQHATTIYL-HHAIADFAEALASKM-PG--NLKVVYF--VNSGT 165 (477)
Q Consensus 94 dG~~ylD~~~g~~~~~lG--h~~p~v~~Av~~~l~~~~~~~~~~~-~~~~~~l~~~La~~~-~~--~~~~v~~--~~sGs 165 (477)
.|+.++||..|.+..+.| +.+|+|.+++.++++... ...|. .....++++.+++++ .. +.++|+| ++||+
T Consensus 24 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~ 101 (394)
T 2ay1_A 24 PRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETET--TKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGT 101 (394)
T ss_dssp CCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCC--CCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHH
T ss_pred CCccccccccceeeCCCCCccCcHHHHHHHHHhcCCcc--cCCCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecCCch
Confidence 356789999988765556 678999999999876521 11222 222455666666554 22 4578999 99999
Q ss_pred HHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHh
Q 011777 166 EANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHID 245 (477)
Q Consensus 166 eA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~ 245 (477)
+|++.++++++.+.++++|++..++||++.......+. .+..++.. ....+..| .+++++.++
T Consensus 102 ~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~-----------~~~~~~~~--~~~~~~~d----~~~l~~~l~ 164 (394)
T 2ay1_A 102 GALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGL-----------PVQTYRYF--DAETRGVD----FEGMKADLA 164 (394)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTC-----------CEEEEECE--ETTTTEEC----HHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCC-----------ceEEEecc--cccCCccC----HHHHHHHHH
Confidence 99999999876555678899999999998665544322 11222211 00011111 578888886
Q ss_pred ccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCC-CCcccccc-CCCcc---eeeec
Q 011777 246 FGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS-HYWGFETQ-GVIPD---IVTMA 320 (477)
Q Consensus 246 ~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~-~~~~~~~~-gv~pD---ivt~s 320 (477)
.. +..+++++++..++++|. .++.+++++|.++|++||+++|+||+|++|+++|. ..+.+..+ ...++ +.++|
T Consensus 165 ~~-~~~~~~~~~~~~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 242 (394)
T 2ay1_A 165 AA-KKGDMVLLHGCCHNPTGA-NLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCS 242 (394)
T ss_dssp TC-CTTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECT
T ss_pred hC-CCCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEecc
Confidence 32 224567776777777774 56889999999999999999999999999977530 11222211 11233 34789
Q ss_pred cccc-CccceEEEEe---CHHHHHhhccc---ccccCCC-CcHHHHHHHHHHHHhhc--------hhhHHHHHHHHHHHH
Q 011777 321 KGIG-NGLPLGAVVT---TPEIANVMAQK---IQFNTFG-GNPVCSAGGLAVLRVID--------KERRQAHCADVGSHL 384 (477)
Q Consensus 321 K~lg-~G~pig~v~~---~~~~~~~~~~~---~~~~t~~-~~~~~~aaa~a~l~~l~--------~~~~~~~~~~~~~~l 384 (477)
|.++ +|+|+||+++ ++++++.+... .+..+++ .|+++++++.++|+... .++..++++++.+++
T Consensus 243 K~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 322 (394)
T 2ay1_A 243 KNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQL 322 (394)
T ss_dssp TTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 7999999998 67654433211 1123443 48899999999887541 134556666666777
Q ss_pred HHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHH
Q 011777 385 LGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDAD 464 (477)
Q Consensus 385 ~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~ 464 (477)
.+.|+++....+.....+..|+++++++ + ...+.+.+.++||++.++ +||+++ .+++++++
T Consensus 323 ~~~L~~~~~~~~~~~~~~~~g~~~~~~~--------~----~~~~~~~l~~~gi~v~~~------~Ris~~-~~~~~~i~ 383 (394)
T 2ay1_A 323 AGELRDLSGSDRFGFVAEHRGMFSRLGA--------T----PEQVKRIKEEFGIYMVGD------SRINIA-GLNDNTIP 383 (394)
T ss_dssp HHHHHHHHTSSTTTHHHHCCSSEEECCC--------C----HHHHHHHHHHHCEECCTT------CEEEGG-GCCTTTHH
T ss_pred HHHHHhcCCCCCeeEEcCCceEEEeeCC--------C----HHHHHHHHHhCCEEecCC------CeEEee-cCCHhhHH
Confidence 7776665311011111223367766644 1 135667777899999864 599877 47999999
Q ss_pred HHHHHHHHH
Q 011777 465 FLVDALDYS 473 (477)
Q Consensus 465 ~~l~~l~~~ 473 (477)
+++++|+++
T Consensus 384 ~~~~~l~~~ 392 (394)
T 2ay1_A 384 ILARAIIEV 392 (394)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 999999875
No 105
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.97 E-value=8.5e-29 Score=251.59 Aligned_cols=346 Identities=11% Similarity=0.049 Sum_probs=219.2
Q ss_pred CEEEeecCCcccc-cCCCCCHHHHHHHHHHHhhccccccccCC-hHHHHHHHHHHhhCC------------CCCCEEEEe
Q 011777 96 RRYLDAFAGIVTV-SCGHCHPDVLNAIFEQSKLLQHATTIYLH-HAIADFAEALASKMP------------GNLKVVYFV 161 (477)
Q Consensus 96 ~~ylD~~~g~~~~-~lGh~~p~v~~Av~~~l~~~~~~~~~~~~-~~~~~l~~~La~~~~------------~~~~~v~~~ 161 (477)
+.+|||..|.+.. +-.+.+|++.+++.++++.... ..|.. ....++++.+++++. .+.++|+++
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~--~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~ 110 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQEC--NGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLC 110 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCS--SSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEE
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCcc--CCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEe
Confidence 5689998887542 1235789999999999875321 11221 123344444444433 346789999
Q ss_pred CChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHH
Q 011777 162 NSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQ 241 (477)
Q Consensus 162 ~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le 241 (477)
+||++|++.+++.+. .+++.|++.+++||++.......+ ...+.++......+..| +++|+
T Consensus 111 ~g~~~al~~~~~~l~--~~gd~vl~~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~~~d----~~~l~ 171 (416)
T 1bw0_A 111 SGGSHGILMAITAIC--DAGDYALVPQPGFPHYETVCKAYG-------------IGMHFYNCRPENDWEAD----LDEIR 171 (416)
T ss_dssp SHHHHHHHHHHHHHC--CTTCEEEEEESCCTHHHHHHHHTT-------------CEEEEEEEEGGGTTEEC----HHHHH
T ss_pred CChHHHHHHHHHHhC--CCCCEEEEcCCCcHhHHHHHHHcC-------------cEEEEeecCcccCCCCC----HHHHH
Confidence 999999999999763 356789999999998765433221 11111111100011111 47788
Q ss_pred HHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCC----CCccccccCCC---c
Q 011777 242 DHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS----HYWGFETQGVI---P 314 (477)
Q Consensus 242 ~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~----~~~~~~~~gv~---p 314 (477)
+.++ ++..++++++| ++++|. .++++++++|.++|++||++||+||+|++|.++|. .+..+...+.. .
T Consensus 172 ~~l~---~~~~~v~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i 246 (416)
T 1bw0_A 172 RLKD---DKTKLLIVTNP-SNPCGS-NFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRV 246 (416)
T ss_dssp HHCC---TTEEEEEEESS-CTTTCC-CCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEE
T ss_pred HHhc---cCCeEEEEeCC-CCCCCc-ccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEE
Confidence 7775 22234455555 566775 56889999999999999999999999999877662 12222222222 2
Q ss_pred ceeeeccccc-CccceEEEEeCHH--HHHhhcc---cccccCCCCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHH
Q 011777 315 DIVTMAKGIG-NGLPLGAVVTTPE--IANVMAQ---KIQFNTFGGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLL 385 (477)
Q Consensus 315 Divt~sK~lg-~G~pig~v~~~~~--~~~~~~~---~~~~~t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~ 385 (477)
.+.++||.++ +|+|+||++++++ +++.+.. .....+++.|+++++++.++|+.+.+ ++..++++++.+++.
T Consensus 247 ~~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 326 (416)
T 1bw0_A 247 ILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLY 326 (416)
T ss_dssp EEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhCCCCCceEEEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 2347899987 5899999998763 4333321 11224678899999999999985432 233444555555555
Q ss_pred HHHHHHHHhCCCceeeec-cceeEEEEEeeCCCCCCccHHHHHHHHHHH-HHcCceeeccCCC--CCEEEEeCCCCCcHH
Q 011777 386 GRLRTLQERHDIIGDVRG-RGLMVGMELVTDRKEKTPAKAETAVLFEKL-RELGVLVGKGGLH--GNVFRIKPPMCFTKD 461 (477)
Q Consensus 386 ~~L~~l~~~~~~~~~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~--~~~iRi~p~~~~t~e 461 (477)
+.|+ +++.+..+.+ .|+++++.+..... +.......+.+.| .++||++.++..+ .+++||++. .+++
T Consensus 327 ~~L~----~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~~--~~~e 397 (416)
T 1bw0_A 327 NHIG----ECIGLAPTMPRGAMYLMSRIDLEKY---RDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTT--RPVE 397 (416)
T ss_dssp HHHT----TSTTEEECCCCBTTEEEEEECGGGB---SSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC--SCHH
T ss_pred HHHH----hCCCCcccCCCeeEEEEEeCCHHHc---CCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEec--CCHH
Confidence 5443 3433433333 47777877732100 0001134677777 4889999987543 478999874 7899
Q ss_pred HHHHHHHHHHHHHhh
Q 011777 462 DADFLVDALDYSMSK 476 (477)
Q Consensus 462 ~i~~~l~~l~~~l~~ 476 (477)
++++++++|.+++++
T Consensus 398 ~l~~~l~~l~~~l~~ 412 (416)
T 1bw0_A 398 VYREAVERIKAFCQR 412 (416)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998864
No 106
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.96 E-value=2.1e-28 Score=249.74 Aligned_cols=312 Identities=13% Similarity=0.079 Sum_probs=212.3
Q ss_pred ccCChHHHHHHHHHHhhCCCCC---------CEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccC
Q 011777 134 IYLHHAIADFAEALASKMPGNL---------KVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTAL 204 (477)
Q Consensus 134 ~~~~~~~~~l~~~La~~~~~~~---------~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~ 204 (477)
.+..+.+..+++.+.+..+... ++|++|+|+++|++.+++.... +++.|++.+++|+++.......+
T Consensus 78 ~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g-- 153 (425)
T 2r2n_A 78 AGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIIN--PGDNVLLDEPAYSGTLQSLHPLG-- 153 (425)
T ss_dssp TCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCC--TTCEEEEESSCCHHHHHHHGGGT--
T ss_pred CCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCC--CCCEEEEeCCCcHHHHHHHHHcC--
Confidence 3444566777777766554332 5899999999999999997632 56889999999998765543322
Q ss_pred CCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC--------CCCeeEEEecc-cCCCCCeeeCCchhHH
Q 011777 205 NTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT--------SGKVAGFIAET-IQGVGGAVELAPGYLK 275 (477)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~--------~~~~a~vi~ep-i~~~~G~~~~~~~~l~ 275 (477)
...+.+|... ..++ .++|+++++... ..++++|+++| .+|++|. .++.++++
T Consensus 154 -----------~~~~~v~~~~-~~~d------~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~-~~~~~~l~ 214 (425)
T 2r2n_A 154 -----------CNIINVASDE-SGIV------PDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGN-SLTSERKK 214 (425)
T ss_dssp -----------CEEEEECEET-TEEC------HHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCC-CCCHHHHH
T ss_pred -----------CEEEEeCcCC-CCCC------HHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCC-cCCHHHHH
Confidence 1222222110 0111 578888886321 13577887765 5677774 56889999
Q ss_pred HHHHHHHHhCcEEEEcCcccCccCCCCC---CccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCC
Q 011777 276 LVYDIVRKAGGVCIADEVQTGFGRTGSH---YWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFG 352 (477)
Q Consensus 276 ~l~~l~~~~gillI~DEv~~gfgr~G~~---~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~ 352 (477)
+|.++|++||++||+||+|++|.+.|.. +..++..+....+.+|||.++.|+|+||+++++++++.+.......+++
T Consensus 215 ~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~~l~~~l~~~~~~~~~~ 294 (425)
T 2r2n_A 215 EIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPKPLIERVILHIQVSTLH 294 (425)
T ss_dssp HHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhccCccceEEEecCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999988776622 2233333444566789999998999999999999998887666667788
Q ss_pred CcHHHHHHHHHHHHhhchh---hHHHHHHHHHHHHHHHHHHHHHh-CCCc-e-eeeccceeEEEEEeeCCCCCCccHHHH
Q 011777 353 GNPVCSAGGLAVLRVIDKE---RRQAHCADVGSHLLGRLRTLQER-HDII-G-DVRGRGLMVGMELVTDRKEKTPAKAET 426 (477)
Q Consensus 353 ~~~~~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~L~~l~~~-~~~~-~-~v~g~g~~~~i~~~~~~~~~~~~~~~~ 426 (477)
.|+++++++.++|+.+.++ ++.+++++..+..++.|.+...+ .+.+ . ..+..|+++++++.... +. .
T Consensus 295 ~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~~-----~~--~ 367 (425)
T 2r2n_A 295 PSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGIN-----DV--K 367 (425)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTCS-----CC--H
T ss_pred CCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCCC-----CH--H
Confidence 9999999999999864322 22222333223333333333323 2322 2 22456788888884211 10 1
Q ss_pred HHHHHHHHHcCceeeccCCC-------CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 427 AVLFEKLRELGVLVGKGGLH-------GNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 427 ~~~~~~l~~~Gv~v~~~~~~-------~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
..+.+.|.++||.+.++..+ .+++||+++. .+++++++++++|.+++++
T Consensus 368 ~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~ 423 (425)
T 2r2n_A 368 ELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSS-ASPEQMDVAFQVLAQLIKE 423 (425)
T ss_dssp HHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSS-CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHH
Confidence 23577888999999987432 3789998763 6999999999999998864
No 107
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.96 E-value=3e-29 Score=255.62 Aligned_cols=345 Identities=12% Similarity=0.035 Sum_probs=231.3
Q ss_pred EEeecCCcccccCCCCCHHHHHHHH--HHHhhcccccccc-C-ChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHH--HH
Q 011777 98 YLDAFAGIVTVSCGHCHPDVLNAIF--EQSKLLQHATTIY-L-HHAIADFAEALASKMPGNLKVVYFVNSGTEANE--LA 171 (477)
Q Consensus 98 ylD~~~g~~~~~lGh~~p~v~~Av~--~~l~~~~~~~~~~-~-~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~--~A 171 (477)
.+||..|.+...+...+|++.+++. +.++. ......| . .....+|++.|+++++.+.++|++|+|+++|+. .+
T Consensus 27 ~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~-~~~~~~Yp~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~ 105 (423)
T 3ez1_A 27 NLNMQRGQPADADFDLSNGLLTVLGAEDVRMD-GLDLRNYPGGVAGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVL 105 (423)
T ss_dssp CEESCCCCCCHHHHHTTGGGGGSCCGGGCEET-TEETTSSCSCTTCCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHH
T ss_pred eEecCCCCCChHhCCCcHHHHHHHhhhHHhhc-chhhhCCCCCCCChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHH
Confidence 4777776654333345567777775 33321 1111234 2 334678999999999877789999999999997 77
Q ss_pred HHHHHhc-cC--------CceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHH
Q 011777 172 MLMARLS-TG--------NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQD 242 (477)
Q Consensus 172 l~~ar~~-~~--------~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 242 (477)
++..... .| ++.|++.+++|+++.......+. ..+.+|.... .++ +++|++
T Consensus 106 ~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~-g~d------~~~l~~ 165 (423)
T 3ez1_A 106 TFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGF-------------ELLTVDMQSD-GPD------VDAVER 165 (423)
T ss_dssp HHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTC-------------EEEEEEEETT-EEC------HHHHHH
T ss_pred HHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCC-------------EEEeccCCCC-CCC------HHHHHH
Confidence 7765432 33 58899999999987665444321 1111111100 111 578888
Q ss_pred HHhccCCCCeeEEEecc-cCCCCCeeeCCchhHHHHHHHH-HHhCcEEEEcCcccCccCCC---C---CCccc----ccc
Q 011777 243 HIDFGTSGKVAGFIAET-IQGVGGAVELAPGYLKLVYDIV-RKAGGVCIADEVQTGFGRTG---S---HYWGF----ETQ 310 (477)
Q Consensus 243 ~i~~~~~~~~a~vi~ep-i~~~~G~~~~~~~~l~~l~~l~-~~~gillI~DEv~~gfgr~G---~---~~~~~----~~~ 310 (477)
+++. ..++++|+++| .+|++| ..++.+.+++|.++| ++||+++|+||+|+.+.+.+ . .++.+ +..
T Consensus 166 ~l~~--~~~~~~v~~~~~~~NPtG-~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (423)
T 3ez1_A 166 LAGT--DPSVKGILFVPTYSNPGG-ETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYP 242 (423)
T ss_dssp HHHS--CTTEEEEEECSSSCTTTC-CCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCT
T ss_pred HHhh--CCCceEEEECCCCCCCCC-cCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCC
Confidence 8852 24688888886 566677 455778899999999 99999999999999543222 0 11111 133
Q ss_pred CCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHh-hc-hhh----HHHHHHHHHHHH
Q 011777 311 GVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRV-ID-KER----RQAHCADVGSHL 384 (477)
Q Consensus 311 gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~-l~-~~~----~~~~~~~~~~~l 384 (477)
+....+.+|||.+.+|+|+||+++++++++.+....+..+++.+++++.++.++++. .. -++ ..+.++++.+.+
T Consensus 243 ~~~i~~~S~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 322 (423)
T 3ez1_A 243 DRAFVFASTSKITFAGAGLGFVASSEDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAV 322 (423)
T ss_dssp TSEEEEEESTTTSCSSSSCEEEEECHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCchhhccCCcceEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 445557789999777999999999999999888766677889999999999988875 11 112 223333344444
Q ss_pred HHHHHHHHHhCC-Cce-eeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC-C-------CCCEEEEeC
Q 011777 385 LGRLRTLQERHD-IIG-DVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG-L-------HGNVFRIKP 454 (477)
Q Consensus 385 ~~~L~~l~~~~~-~~~-~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-~-------~~~~iRi~p 454 (477)
.+.|.+.....+ .+. ..+..|+++++++... ....+.+.|.++||++.+++ . ..+++||++
T Consensus 323 ~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~---------~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~ 393 (423)
T 3ez1_A 323 DEVLRAELGEGGEYATWTLPKGGYFISLDTAEP---------VADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAP 393 (423)
T ss_dssp HHHHHHHHTTTTSSEEECCCSBSSCEEEEESSS---------CHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECC
T ss_pred HHHHHHhcCcCCCceEEeCCCccEEEEEECCCC---------cHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEc
Confidence 454544332333 122 2334578888888421 14567888999999999832 1 247999998
Q ss_pred CCCCcHHHHHHHHHHHHHHHhh
Q 011777 455 PMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 455 ~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
+.. ++++|++++++|.+++++
T Consensus 394 ~~~-~~~~i~~~~~~l~~~l~~ 414 (423)
T 3ez1_A 394 TRP-PVEEVRTAMQVVAACIRL 414 (423)
T ss_dssp SSS-CHHHHHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHHHHH
Confidence 655 999999999999998864
No 108
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.96 E-value=3.8e-29 Score=249.84 Aligned_cols=331 Identities=13% Similarity=0.117 Sum_probs=230.2
Q ss_pred CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc-------ccccccCChHHHHHHHH-HHhhCCCCCCEEEEeCChHH
Q 011777 95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ-------HATTIYLHHAIADFAEA-LASKMPGNLKVVYFVNSGTE 166 (477)
Q Consensus 95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~-------~~~~~~~~~~~~~l~~~-La~~~~~~~~~v~~~~sGse 166 (477)
+-.|||+.+ +.++.+|++.+++.+++.... +....+..+...+++++ ++++++.+ .++|++||++
T Consensus 8 ~~i~ld~~~-----~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~--~v~~~~g~t~ 80 (371)
T 2e7j_A 8 DFINIDPLQ-----TGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD--VARVTNGARE 80 (371)
T ss_dssp CCEECCHHH-----HTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS--EEEEESSHHH
T ss_pred CcEEecccc-----cCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC--EEEEeCChHH
Confidence 345777632 245689999999999887542 11222345678899999 99999765 8999999999
Q ss_pred HHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCC--CCcCCCCCCCHHHHHHHHHHHH
Q 011777 167 ANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNP--DPYHGSFGSDAARYAQDLQDHI 244 (477)
Q Consensus 167 A~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~le~~i 244 (477)
|++.+++.+. .+++.|++.+++||+........ |...+.++ ......+ | +++|++.+
T Consensus 81 a~~~~~~~~~--~~gd~vl~~~~~~~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~--d----~~~l~~~l 139 (371)
T 2e7j_A 81 AKFAVMHSLA--KKDAWVVMDENCHYSSYVAAERA-------------GLNIALVPKTDYPDYAI--T----PENFAQTI 139 (371)
T ss_dssp HHHHHHHHHC--CTTCEEEEETTCCHHHHHHHHHT-------------TCEEEEECCCCTTTCCC--C----HHHHHHHH
T ss_pred HHHHHHHHHh--CCCCEEEEccCcchHHHHHHHHc-------------CCeEEEeecccCCCCCc--C----HHHHHHHH
Confidence 9999999873 36788999999999876653222 22222222 1111112 2 57888888
Q ss_pred hccCC-CCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCccee--eecc
Q 011777 245 DFGTS-GKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAK 321 (477)
Q Consensus 245 ~~~~~-~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK 321 (477)
+.... +++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+++ ..+ +....++ +|++ +++|
T Consensus 140 ~~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~li~D~a~~~~-~~~---~~~~~~~--~di~~~s~sK 209 (371)
T 2e7j_A 140 EETKKRGEVVLALITYPDGNYGNLPD----VKKIAKVCSEYDVPLLVNGAYAIG-RMP---VSLKEIG--ADFIVGSGHK 209 (371)
T ss_dssp HHHTTTSCEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTTBT-TBC---CCHHHHT--CSEEEEEHHH
T ss_pred HhhcccCCeEEEEEECCCCCCcccCC----HHHHHHHHHHcCCeEEEECccccC-CCC---CChhhcC--CCEEEecCCc
Confidence 63211 46889999999999998776 799999999999999999999853 222 2223333 4555 5789
Q ss_pred cccCccceEEEEeCHHHHHh-hccccc--cc-----CCCCcHHHHHHHHHHHHhhchhhHHHHH--HHHHHHHHHHHHHH
Q 011777 322 GIGNGLPLGAVVTTPEIANV-MAQKIQ--FN-----TFGGNPVCSAGGLAVLRVIDKERRQAHC--ADVGSHLLGRLRTL 391 (477)
Q Consensus 322 ~lg~G~pig~v~~~~~~~~~-~~~~~~--~~-----t~~~~~~~~aaa~a~l~~l~~~~~~~~~--~~~~~~l~~~L~~l 391 (477)
++++|.++|++++++++++. +..... .. +++.|+..++++.++++.+.+ ++.+++ +++.+++.+.|+++
T Consensus 210 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~l~~~L~~~ 288 (371)
T 2e7j_A 210 SMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRE-RIKRWDEEVEKARRFAAEMEKL 288 (371)
T ss_dssp HSSCCSSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHH-HGGGHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcEEEEEechhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHc
Confidence 99988899999999998877 665433 22 456678888888888887655 566777 78888888888775
Q ss_pred HHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeecc-------CCCCCEEE-EeCCCC-CcHHH
Q 011777 392 QERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKG-------GLHGNVFR-IKPPMC-FTKDD 462 (477)
Q Consensus 392 ~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-------~~~~~~iR-i~p~~~-~t~e~ 462 (477)
.........+.|.++++++. ...++.+.|.++||.+.+. +...+++| |+++.. +++++
T Consensus 289 --~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~gi~~~~~~~~~~~~g~~~~~iRii~~~~~~~~~~~ 355 (371)
T 2e7j_A 289 --GIKQLGDNPHNHDLMFFHAE-----------VLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEE 355 (371)
T ss_dssp --TCEEESSSSCCSSEEEEECH-----------HHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEECTTCCHHH
T ss_pred --CcEEecCCCccCceEEEECC-----------CHHHHHHHHHHCCEEEEeccccccccCCCCCceEEEEeeccCCCHHH
Confidence 22211111114677787762 2457888888999998761 11257899 998877 89999
Q ss_pred HHHHHHHHHHHHhhC
Q 011777 463 ADFLVDALDYSMSKL 477 (477)
Q Consensus 463 i~~~l~~l~~~l~~l 477 (477)
+++++++|+++++++
T Consensus 356 i~~~~~~l~~~~~~~ 370 (371)
T 2e7j_A 356 VDYVLNAFKEIIEKY 370 (371)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998753
No 109
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.96 E-value=3.9e-28 Score=244.66 Aligned_cols=328 Identities=16% Similarity=0.117 Sum_probs=227.9
Q ss_pred CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCC-EEEEeCChHHHHHHHH
Q 011777 94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLK-VVYFVNSGTEANELAM 172 (477)
Q Consensus 94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~-~v~~~~sGseA~~~Al 172 (477)
+++.|+|..+. ++.+|+|.+++.+++.. +.. ....+...+++++++++++.+.+ +++|++||++|++.++
T Consensus 32 ~~~~~l~~~~~------~~~~~~v~~a~~~~~~~--~~~-~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~ 102 (393)
T 1vjo_A 32 VPSRLLLGPGP------SNAHPSVLQAMNVSPVG--HLD-PAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATI 102 (393)
T ss_dssp CCCCEECSSSC------CCCCHHHHHHHSSCCCC--TTS-HHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHH
T ss_pred CccceeccCCC------CCCCHHHHHHHhccccc--ccC-HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHH
Confidence 44678885432 36789999999876543 111 11235678999999999877667 8999999999999999
Q ss_pred HHHHhccCCceEEEEccCccC--CcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCC
Q 011777 173 LMARLSTGNLGMIALRNAYHG--GSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG 250 (477)
Q Consensus 173 ~~ar~~~~~~~ii~~~~~yhG--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~ 250 (477)
+.+. .++++|++.+++||+ +....... +. .+..++.+. .... | .++|++.++..
T Consensus 103 ~~~~--~~gd~Vl~~~~~~~~~~~~~~~~~~-g~----------~~~~v~~~~--~~~~--d----~~~l~~~l~~~--- 158 (393)
T 1vjo_A 103 ANAV--EPGDVVLIGVAGYFGNRLVDMAGRY-GA----------DVRTISKPW--GEVF--S----LEELRTALETH--- 158 (393)
T ss_dssp HHHC--CTTCEEEEEESSHHHHHHHHHHHHT-TC----------EEEEEECCT--TCCC--C----HHHHHHHHHHH---
T ss_pred Hhcc--CCCCEEEEEcCChhHHHHHHHHHHc-CC----------ceEEEecCC--CCCC--C----HHHHHHHHhhC---
Confidence 9773 366789999999998 33222111 10 122222211 1111 2 57888888621
Q ss_pred CeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeee--cccccCccc
Q 011777 251 KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTM--AKGIGNGLP 328 (477)
Q Consensus 251 ~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~--sK~lg~G~p 328 (477)
++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ ||... + +.....+|++++ +|+++++.+
T Consensus 159 ~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~---~--~~~~~~~di~~~s~sK~l~~~~~ 228 (393)
T 1vjo_A 159 RPAILALVHAETSTGARQP----LEGVGELCREFGTLLLVDTVTS-LGGVP---I--FLDAWGVDLAYSCSQKGLGCSPG 228 (393)
T ss_dssp CCSEEEEESEETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-TTTSC---C--CTTTTTCSEEECCSSSTTCSCSS
T ss_pred CceEEEEeccCCCcceecc----HHHHHHHHHHcCCEEEEECCcc-ccCcC---C--cccccCccEEEEcCcccccCCCc
Confidence 5678888888888997765 7899999999999999999998 65432 2 223345787765 599997669
Q ss_pred eEEEEeCHHHHHhhccc-------cc------------ccCC-CCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHH
Q 011777 329 LGAVVTTPEIANVMAQK-------IQ------------FNTF-GGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLL 385 (477)
Q Consensus 329 ig~v~~~~~~~~~~~~~-------~~------------~~t~-~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~ 385 (477)
+|++++++++++.+... .+ ..++ +.|+++++++.++|+.+.+ ++..++++++.+++.
T Consensus 229 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~ 308 (393)
T 1vjo_A 229 ASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLW 308 (393)
T ss_dssp CEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 99999999998877321 00 2234 6789999999999987644 356778888888888
Q ss_pred HHHHHHHHhCCCceeeec--cceeEEEEEeeCCCCCCccHHHHHHHHHHHHHc-CceeeccCC--CCCEEEEeC-CCCCc
Q 011777 386 GRLRTLQERHDIIGDVRG--RGLMVGMELVTDRKEKTPAKAETAVLFEKLREL-GVLVGKGGL--HGNVFRIKP-PMCFT 459 (477)
Q Consensus 386 ~~L~~l~~~~~~~~~v~g--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~--~~~~iRi~p-~~~~t 459 (477)
+.|+++ ...... ..+ .+.++++.+.. .....++.+.|.++ ||.+.++.. ..+++||++ ++..+
T Consensus 309 ~~L~~~--g~~~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~ 377 (393)
T 1vjo_A 309 ERLEDI--GLSLHV-EKEYRLPTLTTVCIPD--------GVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSR 377 (393)
T ss_dssp HHHHHT--TCCBSS-CGGGBCSSEEEEECCT--------TCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCS
T ss_pred HHHHHc--CCcccC-CccccCCcEEEEEcCC--------CCCHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCCh
Confidence 888775 233221 112 23455565421 11245688889888 999988743 257999994 56678
Q ss_pred HHHHHHHHHHHHHHHh
Q 011777 460 KDDADFLVDALDYSMS 475 (477)
Q Consensus 460 ~e~i~~~l~~l~~~l~ 475 (477)
++++++++++|+++++
T Consensus 378 ~~~i~~~~~~l~~~l~ 393 (393)
T 1vjo_A 378 KESVDQLIPALEQVLR 393 (393)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhC
Confidence 8899999999998863
No 110
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.96 E-value=8.9e-28 Score=241.08 Aligned_cols=329 Identities=15% Similarity=0.100 Sum_probs=229.8
Q ss_pred CEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCC-CCEEEEeCChHHHHHHHHHH
Q 011777 96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGN-LKVVYFVNSGTEANELAMLM 174 (477)
Q Consensus 96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~-~~~v~~~~sGseA~~~Al~~ 174 (477)
+.|+|+.+ .++.+|++.+++.+++.. +... ...+...+++++++++++.+ .+.+++++||++|++.+++.
T Consensus 20 ~~~l~~~~------~~~~~~~v~~a~~~~~~~--~~~~-~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~ 90 (386)
T 2dr1_A 20 KYKLFTAG------PVACFPEVLEIMKVQMFS--HRSK-EYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRN 90 (386)
T ss_dssp CSEECCSS------SCCCCHHHHHHTTSCCCC--TTSH-HHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHH
T ss_pred cceeecCC------CcCCcHHHHHHHhccccc--ccCH-HHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHH
Confidence 46888643 246789999998776542 1111 12466789999999988765 56799999999999999997
Q ss_pred HHhccCCceEEEEccCccCC--cccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCe
Q 011777 175 ARLSTGNLGMIALRNAYHGG--SSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKV 252 (477)
Q Consensus 175 ar~~~~~~~ii~~~~~yhG~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~ 252 (477)
+. .++++|++.+++||+. ....... +. .+..++... .... | .++|++.++. .+++
T Consensus 91 l~--~~gd~vl~~~~~~~~~~~~~~~~~~-g~----------~~~~v~~~~--~~~~--d----~~~l~~~l~~--~~~~ 147 (386)
T 2dr1_A 91 GV--SKGGKVLVTIIGAFGKRYKEVVESN-GR----------KAVVLEYEP--GKAV--K----PEDLDDALRK--NPDV 147 (386)
T ss_dssp HS--CTTCEEEEEESSHHHHHHHHHHHHT-TC----------EEEEEECCT--TCCC--C----HHHHHHHHHH--CTTC
T ss_pred hh--cCCCeEEEEcCCchhHHHHHHHHHh-CC----------ceEEEecCC--CCCC--C----HHHHHHHHhc--CCCC
Confidence 63 3668899999999983 2221111 10 122222211 1111 2 5788888853 1367
Q ss_pred eEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeee--cccccCccceE
Q 011777 253 AGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTM--AKGIGNGLPLG 330 (477)
Q Consensus 253 a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~--sK~lg~G~pig 330 (477)
++|+++++++++|.+.+ +++|.++|++||+++|+||+|+.+ .. .+.+..+ .+|++++ +|.++++.++|
T Consensus 148 ~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~~-~~---~~~~~~~--~~di~~~s~sK~~~~~~g~G 217 (386)
T 2dr1_A 148 EAVTITYNETSTGVLNP----LPELAKVAKEHDKLVFVDAVSAMG-GA---DIKFDKW--GLDVVFSSSQKAFGVPPGLA 217 (386)
T ss_dssp CEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTBT-TB---CCCTTTT--TCSEEEEETTSTTCCCSSCE
T ss_pred cEEEEEeecCCcchhCC----HHHHHHHHHHcCCeEEEEcccccc-Cc---ccccccc--CCcEEEEeccccccCCCceE
Confidence 88888888889998766 899999999999999999999743 21 1222222 4577765 49999766699
Q ss_pred EEEeCHHHHHhhcc----------------c--ccccCCCCcHHHHHHHHHHHHhhchh----hHHHHHHHHHHHHHHHH
Q 011777 331 AVVTTPEIANVMAQ----------------K--IQFNTFGGNPVCSAGGLAVLRVIDKE----RRQAHCADVGSHLLGRL 388 (477)
Q Consensus 331 ~v~~~~~~~~~~~~----------------~--~~~~t~~~~~~~~aaa~a~l~~l~~~----~~~~~~~~~~~~l~~~L 388 (477)
++++++++++.+.. . ....+++.|+++++++.++|+.+.++ +..++++++.+++.+.|
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L 297 (386)
T 2dr1_A 218 IGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGV 297 (386)
T ss_dssp EEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 99999998877632 1 12346678899999999999876543 56778888888888888
Q ss_pred HHHHHhCCCceee-eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC--CCCEEEEeCCCCCcHHHHHH
Q 011777 389 RTLQERHDIIGDV-RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL--HGNVFRIKPPMCFTKDDADF 465 (477)
Q Consensus 389 ~~l~~~~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p~~~~t~e~i~~ 465 (477)
+++ ........ ...+.++++.+... ....++.+.|.++||.+.++.. ..+++||+++..++++|+++
T Consensus 298 ~~~--g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~ 367 (386)
T 2dr1_A 298 REI--GLDILAEPGHESPTITAVLTPPG--------IKGDEVYEAMRKRGFELAKGYGSVKEKTFRIGHMGYMKFEDIQE 367 (386)
T ss_dssp HHT--TCCBSSCTTCBCSSEEEEECCTT--------CCHHHHHHHHHHTTEECEECCGGGTTTEEEEECCSSCCHHHHHH
T ss_pred HHc--CCeeCcCccccCCceEEEEcCCC--------CCHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHH
Confidence 775 23222110 01467777776311 1245788899999999988642 25799999998899999999
Q ss_pred HHHHHHHHHhh
Q 011777 466 LVDALDYSMSK 476 (477)
Q Consensus 466 ~l~~l~~~l~~ 476 (477)
++++|++++++
T Consensus 368 ~~~~l~~~~~~ 378 (386)
T 2dr1_A 368 MLDNLREVINE 378 (386)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 111
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.96 E-value=8.4e-29 Score=252.40 Aligned_cols=345 Identities=12% Similarity=0.050 Sum_probs=229.0
Q ss_pred EEeecCCcccccCCCCCHHHHHHHHHHHh-hccccccccCChH-HHHHHHHHHhhCCCCCCEEEEeCChHHHH--HHHHH
Q 011777 98 YLDAFAGIVTVSCGHCHPDVLNAIFEQSK-LLQHATTIYLHHA-IADFAEALASKMPGNLKVVYFVNSGTEAN--ELAML 173 (477)
Q Consensus 98 ylD~~~g~~~~~lGh~~p~v~~Av~~~l~-~~~~~~~~~~~~~-~~~l~~~La~~~~~~~~~v~~~~sGseA~--~~Al~ 173 (477)
.|||..|.....+-..+|.+.+++.+++. ........|.... ..+|++.++++++.+.++|++|+|+++++ ..+++
T Consensus 34 ~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~ 113 (422)
T 3d6k_A 34 SLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEALGLPADLVVAQDGSSLNIMFDLISW 113 (422)
T ss_dssp CEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHH
T ss_pred eEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHHH
Confidence 68888776531111235577777765431 1110122344333 67888888888877778999999999997 56556
Q ss_pred HHHhc--cC--------CceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHH
Q 011777 174 MARLS--TG--------NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDH 243 (477)
Q Consensus 174 ~ar~~--~~--------~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~ 243 (477)
..... .| ++.|++.+++|+++.......+. ..+.+|.... .++ ++++++.
T Consensus 114 ~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~-g~d------~~~l~~~ 173 (422)
T 3d6k_A 114 SYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGF-------------EMINVPMTDE-GPD------MGVVREL 173 (422)
T ss_dssp HHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTC-------------EEEEEEEETT-EEC------HHHHHHH
T ss_pred HhcCcccccccccccCCCCEEEEeCCccHHHHHHHHHcCC-------------EEEecCCCCC-CCC------HHHHHHH
Confidence 55431 01 23699999999988765443321 1111111100 111 5788888
Q ss_pred HhccCCCCeeEEEecc-cCCCCCeeeCCchhHHHHHHHHH-HhCcEEEEcCcccC--ccCCCCCCccc-------cccCC
Q 011777 244 IDFGTSGKVAGFIAET-IQGVGGAVELAPGYLKLVYDIVR-KAGGVCIADEVQTG--FGRTGSHYWGF-------ETQGV 312 (477)
Q Consensus 244 i~~~~~~~~a~vi~ep-i~~~~G~~~~~~~~l~~l~~l~~-~~gillI~DEv~~g--fgr~G~~~~~~-------~~~gv 312 (477)
++ ..++++|++.| .+|++| ..++.+++++|.++|+ +||+++|+||+|.. |+..|..+..+ +..+.
T Consensus 174 l~---~~~~~~v~~~~~~~NPtG-~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (422)
T 3d6k_A 174 VK---DPQVKGMWTVPVFGNPTG-VTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNR 249 (422)
T ss_dssp HT---STTEEEEEECCSSCTTTC-CCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTC
T ss_pred Hh---cCCCeEEEEcCCCCCCCC-CCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCc
Confidence 76 23678887555 566677 4668999999999999 99999999999974 65544212222 23455
Q ss_pred CcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhc---h--hhHHHHHHHHHHHHHHH
Q 011777 313 IPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID---K--ERRQAHCADVGSHLLGR 387 (477)
Q Consensus 313 ~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~---~--~~~~~~~~~~~~~l~~~ 387 (477)
.+++.+|||..++|+|+||+++++++++.+.......+++.|+++++++.++|+... + ++..+.++++.+++.+.
T Consensus 250 ~i~~~S~SK~~~~GlriG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 329 (422)
T 3d6k_A 250 FWFMSSTSKITHAGSGVSFFASSKENIEWYASHANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEI 329 (422)
T ss_dssp EEEEEESTTTSCTTSSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcChhhhcCcccceEEEEeCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 667779999966799999999999999988776666778899999999998886411 0 12233444455566666
Q ss_pred HHHHHHhCCCcee-eeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC-C-------CCEEEEeCCCCC
Q 011777 388 LRTLQERHDIIGD-VRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL-H-------GNVFRIKPPMCF 458 (477)
Q Consensus 388 L~~l~~~~~~~~~-v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~-------~~~iRi~p~~~~ 458 (477)
|.+.....+.+.. .+..|+++|+++... ....+.+.|.++||++.+++. + .+++||+++. .
T Consensus 330 L~~~l~~~~~~~~~~p~~g~~~~~~~~~~---------~~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~-~ 399 (422)
T 3d6k_A 330 LDSRLSEYGVAKWTSPTGGYFISVDVVPG---------TASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSL-P 399 (422)
T ss_dssp HHHHHGGGTCEEECCCSBSSCEEEEESTT---------CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSS-S
T ss_pred HHHhcCcCCceEEeCCCcceEEEEECCCC---------CHHHHHHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCC-C
Confidence 6554333333332 233578888888321 134677888999999998432 2 4789998776 8
Q ss_pred cHHHHHHHHHHHHHHHhh
Q 011777 459 TKDDADFLVDALDYSMSK 476 (477)
Q Consensus 459 t~e~i~~~l~~l~~~l~~ 476 (477)
+++++++++++|++++++
T Consensus 400 ~~e~i~~~~~~l~~~l~~ 417 (422)
T 3d6k_A 400 PVAELEVAMDGFATCVLM 417 (422)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999998764
No 112
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.96 E-value=4.8e-27 Score=238.45 Aligned_cols=334 Identities=13% Similarity=0.092 Sum_probs=229.1
Q ss_pred CCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc---c-cccccC---ChHHHHHHHHHHhhCCC-CCCEEEEeCCh
Q 011777 93 ENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ---H-ATTIYL---HHAIADFAEALASKMPG-NLKVVYFVNSG 164 (477)
Q Consensus 93 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~---~-~~~~~~---~~~~~~l~~~La~~~~~-~~~~v~~~~sG 164 (477)
.+|+.+++|..+.. ++.+|+|.+++.++++... + ....|. .+...+++++|+++++. +.+++++++||
T Consensus 24 ~~g~~~i~l~~~~~----~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~ 99 (420)
T 1t3i_A 24 INGHPLVYLDNAAT----SQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNA 99 (420)
T ss_dssp ETTEECEECBTTTC----CCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSH
T ss_pred cCCCceEEecCCcc----CCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCCh
Confidence 36777888776654 4688999999999987632 1 111122 35578899999999976 56789999999
Q ss_pred HHHHHHHHHHHHh--ccCCceEEEEccCccCCcccccc---cccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHH
Q 011777 165 TEANELAMLMARL--STGNLGMIALRNAYHGGSSGTIG---LTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQD 239 (477)
Q Consensus 165 seA~~~Al~~ar~--~~~~~~ii~~~~~yhG~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (477)
++|++.+++.++. ..++++|++.+++||+....... ..+. .+..++... .+..| +++
T Consensus 100 t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~----------~~~~v~~~~----~~~~d----~~~ 161 (420)
T 1t3i_A 100 TEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGA----------VLKFVQLDE----QESFD----LEH 161 (420)
T ss_dssp HHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCC----------EEEEECBCT----TSSBC----HHH
T ss_pred HHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCc----------EEEEeccCC----CCCcC----HHH
Confidence 9999999998731 34667899999999996421111 1111 112222211 11111 477
Q ss_pred HHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeee
Q 011777 240 LQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTM 319 (477)
Q Consensus 240 le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~ 319 (477)
+++.++ +++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ +|.. .+....++ +|++++
T Consensus 162 l~~~l~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~---~~~~~~~~--~di~~~ 227 (420)
T 1t3i_A 162 FKTLLS----EKTKLVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQS-APHY---PLDVQLID--CDWLVA 227 (420)
T ss_dssp HHHHCC----TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTS---CCCHHHHT--CSEEEE
T ss_pred HHHhhC----CCceEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEEhhhc-cCCc---cCchhhcC--CCEEEE
Confidence 888775 46889999999999998776 8999999999999999999997 3322 12223333 677765
Q ss_pred --cccccCccceEEEEeCHHHHHhhccccccc--------------------CCCCcHHHHHHHHH-HHHhhch---hhH
Q 011777 320 --AKGIGNGLPLGAVVTTPEIANVMAQKIQFN--------------------TFGGNPVCSAGGLA-VLRVIDK---ERR 373 (477)
Q Consensus 320 --sK~lg~G~pig~v~~~~~~~~~~~~~~~~~--------------------t~~~~~~~~aaa~a-~l~~l~~---~~~ 373 (477)
+|.+++ .++|++++++++++.+......+ +.+.+++.+++++. +++.+.+ +++
T Consensus 228 s~sK~~~~-~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~ 306 (420)
T 1t3i_A 228 SGHKMCAP-TGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENI 306 (420)
T ss_dssp EGGGTTSC-TTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred ehhhhcCC-CceEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHH
Confidence 496653 34899999999998886543221 23456666666554 6776654 456
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceeee------ccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC--
Q 011777 374 QAHCADVGSHLLGRLRTLQERHDIIGDVR------GRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL-- 445 (477)
Q Consensus 374 ~~~~~~~~~~l~~~L~~l~~~~~~~~~v~------g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-- 445 (477)
.++.+++.+++.+.|+++ +.+..+. +.|.++.+.+.. . ...++.+.|.++||.+.++..
T Consensus 307 ~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~l~~~gi~v~~~~~~~ 373 (420)
T 1t3i_A 307 HNYEVELTHYLWQGLGQI----PQLRLYGPNPKHGDRAALASFNVAG------L---HASDVATMVDQDGIAIRSGHHCT 373 (420)
T ss_dssp HHHHHHHHHHHHHHHHTC----TTEEEESCCGGGSCBCSEEEEEETT------B---CHHHHHHHHHTTTEECBCSCTTC
T ss_pred HHHHHHHHHHHHHHHHhC----CCeEEeCCCccccccCCEEEEEECC------C---CHHHHHHHHHHCCeEEeeccccc
Confidence 677777777777777653 2222221 247787777621 0 134677889999999988621
Q ss_pred ------C--CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 446 ------H--GNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 446 ------~--~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
+ .+++||+++..++++|+++++++|++++++
T Consensus 374 ~~~~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 412 (420)
T 1t3i_A 374 QPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRF 412 (420)
T ss_dssp HHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 1 578999999889999999999999998764
No 113
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.96 E-value=5e-28 Score=245.84 Aligned_cols=347 Identities=11% Similarity=0.020 Sum_probs=215.5
Q ss_pred CEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc------ccccccC-ChHHHHHHHHHHhhC------CCCCCEEEEeC
Q 011777 96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ------HATTIYL-HHAIADFAEALASKM------PGNLKVVYFVN 162 (477)
Q Consensus 96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~------~~~~~~~-~~~~~~l~~~La~~~------~~~~~~v~~~~ 162 (477)
..++||..|... ..|.+.+++.+++.+.. .....|. .....+|++.+++++ +.+.++|+||+
T Consensus 31 ~~~i~l~~g~p~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~ 105 (417)
T 3g7q_A 31 PGAIMLGGGNPA-----HIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTN 105 (417)
T ss_dssp -CCEECSCCCCC-----CCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEES
T ss_pred CCceEecCcCCC-----CCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeC
Confidence 457888776542 13545555555444321 0011232 223455666666554 45668999999
Q ss_pred ChHHHHHHHHHHHHhcc---CCceEEEE-ccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHH
Q 011777 163 SGTEANELAMLMARLST---GNLGMIAL-RNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQ 238 (477)
Q Consensus 163 sGseA~~~Al~~ar~~~---~~~~ii~~-~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (477)
||++|++.+++.+.... ++..|++. .++||++.............. ..+..++.. ......+ .+
T Consensus 106 G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~d------~~ 173 (417)
T 3g7q_A 106 GSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSAR-----PNIELLPEG-QFKYHVD------FE 173 (417)
T ss_dssp CHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECC-----CEEEEEGGG-EEEEECC------GG
T ss_pred CcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhcccc-----CcccccCCc-ccccccC------HH
Confidence 99999999999775421 11277776 899999866543221100000 011111100 0000011 24
Q ss_pred HHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc--cccCCCcce
Q 011777 239 DLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF--ETQGVIPDI 316 (477)
Q Consensus 239 ~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~--~~~gv~pDi 316 (477)
+++ +. .++++|+++..+|++|. .++++.+++|.++|++||+++|+||+|..+. .+..+... +..+....+
T Consensus 174 ~l~--~~----~~~~~v~~~~p~NptG~-~~~~~~~~~l~~~a~~~~~~li~De~~~~~~-~~~~~~~~~~~~~~~~i~~ 245 (417)
T 3g7q_A 174 HLH--IG----EETGMICVSRPTNPTGN-VITDEELMKLDRLANQHNIPLVIDNAYGVPF-PGIIFSEARPLWNPNIILC 245 (417)
T ss_dssp GCC--CC----TTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCCEEEECTTCTTT-TCCBCSCCCCCCCTTEEEE
T ss_pred Hhc--cc----cCceEEEECCCCCCCCC-ccCHHHHHHHHHHHHHcCCEEEEeCCCcccc-ccccccccccCCCCCEEEE
Confidence 444 22 46777777766778884 5577889999999999999999999997532 11011111 122344456
Q ss_pred eeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchh-----hHHHHHHHHHHHHHHHHHHH
Q 011777 317 VTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKE-----RRQAHCADVGSHLLGRLRTL 391 (477)
Q Consensus 317 vt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~-----~~~~~~~~~~~~l~~~L~~l 391 (477)
.+|||...+|+|+||+++++++++.+....+..+++.++++++++.+.++..... .+.++++++.+++.+.|.+.
T Consensus 246 ~s~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 325 (417)
T 3g7q_A 246 MSLSKLGLPGSRCGIIIANDKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRY 325 (417)
T ss_dssp EESGGGTCTTSCCEEEECCHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred EechhccCCCcceEEEEeCHHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7899954469999999999999998887767778888999999999888754322 13445555666666666654
Q ss_pred HHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC-----------CCEEEEeCCCCCcH
Q 011777 392 QERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH-----------GNVFRIKPPMCFTK 460 (477)
Q Consensus 392 ~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-----------~~~iRi~p~~~~t~ 460 (477)
....++....+..|+++++++... .....++.+.|.++||.+.++..+ .+++||+++. ++
T Consensus 326 l~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~--~~ 396 (417)
T 3g7q_A 326 LSEERCLIHKPEGAIFLWLWFKDL-------PITTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP--EP 396 (417)
T ss_dssp CCTTTCEEECCCBSSEEEEECTTC-------SSCHHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCS--CH
T ss_pred cccCCceeeCCCcceEEEEEcCCC-------CCCHHHHHHHHHHCCEEEECchhhCCCCccccccCCCeEEEEecC--CH
Confidence 322222233345578888877321 012456888899999999987432 4689999874 99
Q ss_pred HHHHHHHHHHHHHHhh
Q 011777 461 DDADFLVDALDYSMSK 476 (477)
Q Consensus 461 e~i~~~l~~l~~~l~~ 476 (477)
++|++++++|.+++++
T Consensus 397 ~~i~~~~~~l~~~l~~ 412 (417)
T 3g7q_A 397 DKIEAGVKILAEEIER 412 (417)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998864
No 114
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.96 E-value=7.5e-28 Score=242.06 Aligned_cols=318 Identities=13% Similarity=0.071 Sum_probs=218.9
Q ss_pred CCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCC-EEEEeCChHHHHHHHHHHHHhccCCceEEEEccCc
Q 011777 113 CHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLK-VVYFVNSGTEANELAMLMARLSTGNLGMIALRNAY 191 (477)
Q Consensus 113 ~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~-~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~y 191 (477)
.+|+|.+|+.+++.. +.. ....+...+++++|+++++...+ .|+|++||++|++.+++.+ ..++++|++..++|
T Consensus 34 ~~~~v~~a~~~~~~~--~~~-~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~--~~~gd~vl~~~~~~ 108 (393)
T 3kgw_A 34 LAPRVLAAGSLRMIG--HMQ-KEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNL--LEPGDSFLTGTNGI 108 (393)
T ss_dssp CCHHHHHHTTCCCCC--TTS-HHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHH--CCTTCEEEEEESSH
T ss_pred CCHHHHHHhcccccC--ccc-HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhc--CCCCCEEEEEeCCc
Confidence 588999988764321 211 11235567899999999876444 5999999999999999977 34778899998888
Q ss_pred cCCccccc-ccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCC
Q 011777 192 HGGSSGTI-GLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELA 270 (477)
Q Consensus 192 hG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~ 270 (477)
||...... ... |...+.++......++ ++++++.++. .++++|+++++++++|.+.+
T Consensus 109 ~~~~~~~~~~~~------------g~~~~~~~~~~~~~~d------~~~l~~~i~~---~~~~~v~~~~~~nptG~~~~- 166 (393)
T 3kgw_A 109 WGMRAAEIADRI------------GARVHQMIKKPGEHYT------LQEVEEGLAQ---HKPVLLFLVHGESSTGVVQP- 166 (393)
T ss_dssp HHHHHHHHHHHT------------TCEEEEEECCTTCCCC------HHHHHHHHHH---HCCSEEEEESEETTTTEECC-
T ss_pred hhHHHHHHHHHc------------CCceEEEeCCCCCCCC------HHHHHHHHhh---CCCcEEEEeccCCcchhhcc-
Confidence 76422111 111 2222222221111222 5888888872 26788899988999997776
Q ss_pred chhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceee--ecccccCccceEEEEeCHHHHHhhccccc-
Q 011777 271 PGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGNGLPLGAVVTTPEIANVMAQKIQ- 347 (477)
Q Consensus 271 ~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~pig~v~~~~~~~~~~~~~~~- 347 (477)
+++|.++|++||+++|+||+|+ +| + ..+..+.++ +|+++ ++|+++++.++|++++++++++.+.....
T Consensus 167 ---l~~i~~l~~~~~~~li~De~~~-~g--~-~~~~~~~~~--~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~ 237 (393)
T 3kgw_A 167 ---LDGFGELCHRYQCLLLVDSVAS-LG--G-VPIYMDQQG--IDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTK 237 (393)
T ss_dssp ---CTTHHHHHHHTTCEEEEECTTT-TT--T-SCCCTTTTT--CCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSC
T ss_pred ---HHHHHHHHHHcCCEEEEECCcc-cc--C-cccchhhcC--CCEEEecCcccccCCCceeEEEECHHHHHHHhccCCC
Confidence 8899999999999999999987 32 1 233333344 46655 55999887789999999999888754211
Q ss_pred ----------------------ccCCCCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCCCce-e-
Q 011777 348 ----------------------FNTFGGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERHDIIG-D- 400 (477)
Q Consensus 348 ----------------------~~t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~-~- 400 (477)
..+++.|+.+++++.++++.+.+ ++..++++++++++.+.|+++ ...... .
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~ 315 (393)
T 3kgw_A 238 PVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEM--GLKFFVKDP 315 (393)
T ss_dssp CSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCBSSSSG
T ss_pred CCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc--CCeeccCCh
Confidence 12345678888888888887655 456778888888888888775 222211 1
Q ss_pred eeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHc-CceeeccC--CCCCEEEEeC-CCCCcHHHHHHHHHHHHHHHhh
Q 011777 401 VRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLREL-GVLVGKGG--LHGNVFRIKP-PMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 401 v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~--~~~~~iRi~p-~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
....+.++++.+.. .....++.+.|+++ ||++.++. ..++++||++ ++.++++|+++++++|++++++
T Consensus 316 ~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~ 387 (393)
T 3kgw_A 316 EIRLPTITTVTVPA--------GYNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQH 387 (393)
T ss_dssp GGBCSSEEEEECCT--------TBCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred hhcCCeEEEEeCCC--------CCCHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHh
Confidence 11224555666521 11245788888888 99998763 2357999998 7777999999999999999865
No 115
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.96 E-value=5e-27 Score=231.41 Aligned_cols=318 Identities=17% Similarity=0.103 Sum_probs=222.9
Q ss_pred CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHH
Q 011777 94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAML 173 (477)
Q Consensus 94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~ 173 (477)
+.+++|||.++. +++| .+|+|.+++.++++.. ..|+.+...++++.++++++.+.++|+|++|++++++.+++
T Consensus 14 ~~~~~i~l~~n~--~~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~ 86 (337)
T 3p1t_A 14 AAAQAVCLAFNE--NPEA-VEPRVQAAIAAAAARI----NRYPFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISA 86 (337)
T ss_dssp CCCCCEECSSCC--CCSC-CCHHHHHHHHHHGGGT----TSCCTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHH
T ss_pred CCCCceEeeCCC--CCCC-CCHHHHHHHHHhhhhh----ccCCCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHH
Confidence 456789998876 4576 6899999999887653 23556778899999999998777799999999999999988
Q ss_pred HHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCee
Q 011777 174 MARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVA 253 (477)
Q Consensus 174 ~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a 253 (477)
.. +++.|++.+++|+++....... |...+.+|... .+..| .++++++ .+++
T Consensus 87 ~~----~gd~vl~~~p~~~~~~~~~~~~-------------g~~~~~v~~~~--~~~~d----~~~l~~~------~~~~ 137 (337)
T 3p1t_A 87 EF----SSMRFVTAWPGFDGYRARIAVS-------------GLRHFEIGLTD--DLLLD----PNDLAQV------SRDD 137 (337)
T ss_dssp HS----TTSEEEEESSSCSHHHHHHTTS-------------CCEEEEECBCT--TSSBC----HHHHTTC------CTTE
T ss_pred hc----CCCeEEEeCCCcHHHHHHHHHc-------------CCEEEEecCCC--CCCCC----HHHHHhh------cCCC
Confidence 64 5678999999998865543322 22222222111 11111 3555443 2346
Q ss_pred EEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeeccccc-CccceEEE
Q 011777 254 GFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIG-NGLPLGAV 332 (477)
Q Consensus 254 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg-~G~pig~v 332 (477)
+++++..++++|.+.+ ++++.++|+++++ +|+||+|.+|+..+ .. .....+....+.++||.+| .|+|+||+
T Consensus 138 ~v~i~~p~nptG~~~~----~~~l~~l~~~~~~-~ivDea~~~~~~~~-~~-~~~~~~~~i~~~S~sK~~g~~G~r~G~~ 210 (337)
T 3p1t_A 138 CVVLANPSNPTGQALS----AGELDQLRQRAGK-LLIDETYVDYSSFR-AR-GLAYGENELVFRSFSKSYGLAGLRLGAL 210 (337)
T ss_dssp EEEEESSCTTTCCCCC----HHHHHHHHHHCSE-EEEECTTGGGSSCS-SS-CCCCBTTEEEEEESSSTTCCTTTCCEEE
T ss_pred EEEEeCCCCCCCCCCC----HHHHHHHHHhCCc-EEEECCChhhcccc-cc-ccccCCCEEEEeeCchhccCcchheEEE
Confidence 6666666778887777 7788999999997 55599999887654 21 1222233334557999998 79999999
Q ss_pred EeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEE
Q 011777 333 VTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK-ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGME 411 (477)
Q Consensus 333 ~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~ 411 (477)
++++++++.+.... .+++.++++++++.++|+..+. ++..+++.+..+++.+.|+++ + +...++.|.++++.
T Consensus 211 ~~~~~~~~~l~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g-~~~~~~~~~~~~~~ 283 (337)
T 3p1t_A 211 FGPSELIAAMKRKQ--WFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGL----G-YRVASSEANFVLVE 283 (337)
T ss_dssp ECCHHHHHHHHTTS--CTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT----T-CCBCCCSSSEEEEE
T ss_pred EeCHHHHHHHHhhc--CCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC----c-CEECCCCCeEEEEE
Confidence 99999998887543 4567888999988888874321 334455555566666666553 3 22345567777766
Q ss_pred EeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC--CCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777 412 LVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH--GNVFRIKPPMCFTKDDADFLVDALDYSMS 475 (477)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~p~~~~t~e~i~~~l~~l~~~l~ 475 (477)
..+ ...+.+.|.++||.+.++..+ .+++||++. +++++++++++|+++++
T Consensus 284 ~~~-----------~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 284 NAA-----------GERTLRFLRERGIQVKDAGQFGLHHHIRISIG---REEDNDRLLAALAEYSD 335 (337)
T ss_dssp CTT-----------THHHHHHHHHTTEECEEGGGGTCCSEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred cCC-----------HHHHHHHHHHCCeEEEECccCCCCCeEEEecC---CHHHHHHHHHHHHHHhh
Confidence 421 135677888999999987543 479999755 79999999999998765
No 116
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.96 E-value=7.1e-28 Score=245.32 Aligned_cols=342 Identities=14% Similarity=0.043 Sum_probs=220.2
Q ss_pred CEEEeecCCcccccCCCCC--HHHHHHHHHHHhhcc---ccccccCChHHHHHHHHHHhhCC--CCCC--EEEEeCChHH
Q 011777 96 RRYLDAFAGIVTVSCGHCH--PDVLNAIFEQSKLLQ---HATTIYLHHAIADFAEALASKMP--GNLK--VVYFVNSGTE 166 (477)
Q Consensus 96 ~~ylD~~~g~~~~~lGh~~--p~v~~Av~~~l~~~~---~~~~~~~~~~~~~l~~~La~~~~--~~~~--~v~~~~sGse 166 (477)
..+|||..|.+..+.|+.+ |.|.+|+.++++... +....+..+.++.+++++..... .+.+ +|++|+||++
T Consensus 49 ~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~ 128 (420)
T 4f4e_A 49 PTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTG 128 (420)
T ss_dssp SSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred CCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHH
Confidence 3679999987666677765 899999999887621 11112223444555555543321 0345 8999999999
Q ss_pred HHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhc
Q 011777 167 ANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF 246 (477)
Q Consensus 167 A~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~ 246 (477)
|++.++++.....+++.|++.+++|+++.......+. .+..++..+.....++ ++++++.++.
T Consensus 129 al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~-----------~~~~v~~~~~~~~~~d------~~~l~~~l~~ 191 (420)
T 4f4e_A 129 ALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGF-----------EVVAYPYYDAKTNGVN------FDGMLAALNG 191 (420)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTTC-----------CEEEEECEETTTTEEC------HHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcCC-----------eEEEeeeeccccCccC------HHHHHHHHHh
Confidence 9999988655455778999999999987655444322 1222221000011111 5788888863
Q ss_pred cCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCC-CCcccc----ccCCCcceeeecc
Q 011777 247 GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS-HYWGFE----TQGVIPDIVTMAK 321 (477)
Q Consensus 247 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~-~~~~~~----~~gv~pDivt~sK 321 (477)
. +.++++++++..+|++|. .++.+.+++|.++|++||+++|+||+|.+|++.+. ...++. ..+....+.+|||
T Consensus 192 ~-~~~~~~v~i~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 269 (420)
T 4f4e_A 192 Y-EPGTIVVLHACCHNPTGV-DLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSK 269 (420)
T ss_dssp C-CTTCEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTT
T ss_pred C-CCCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCc
Confidence 3 346778888888888884 56888899999999999999999999999987641 122221 1222233447999
Q ss_pred ccc-CccceEEEEe---CHHHHHhh----cccccccCCCCcHHHHHHHHHHHHhhc--------hhhHHHHHHHHHHHHH
Q 011777 322 GIG-NGLPLGAVVT---TPEIANVM----AQKIQFNTFGGNPVCSAGGLAVLRVID--------KERRQAHCADVGSHLL 385 (477)
Q Consensus 322 ~lg-~G~pig~v~~---~~~~~~~~----~~~~~~~t~~~~~~~~aaa~a~l~~l~--------~~~~~~~~~~~~~~l~ 385 (477)
.++ .|+|+||+++ ++++++.+ .......+.+.+++++.++.++++... -+++.++++++++++.
T Consensus 270 ~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 349 (420)
T 4f4e_A 270 SFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLV 349 (420)
T ss_dssp TTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 5999999864 56655432 221223445567788887777776421 1334555666666666
Q ss_pred HHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHH
Q 011777 386 GRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADF 465 (477)
Q Consensus 386 ~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~ 465 (477)
+.|+++....+.....+..|+++++.+. ...+.+.+.++||++.+++ ||++. .+++++|++
T Consensus 350 ~~L~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~l~~~gI~v~~~~------Ris~~-~~~~~~i~~ 410 (420)
T 4f4e_A 350 ERLKAAGIERDFSFINAQRGMFSYSGLT------------SAQVDRLREEFGIYAVSTG------RICVA-ALNTRNLDV 410 (420)
T ss_dssp HHHHHTTCSSCCTHHHHSCSSEEECCCC------------HHHHHHHHHHHCEECCTTS------EEEGG-GCCTTTHHH
T ss_pred HHHHhcCCCCCceeECCCccEEEEeCCC------------HHHHHHHHHhCCEEecCCC------eEEEe-cCCHHHHHH
Confidence 6665542111222223345666665441 2356677788999998753 88875 457888999
Q ss_pred HHHHHHHHHh
Q 011777 466 LVDALDYSMS 475 (477)
Q Consensus 466 ~l~~l~~~l~ 475 (477)
++++|+++++
T Consensus 411 ~~~~l~~~l~ 420 (420)
T 4f4e_A 411 VANAIAAVLK 420 (420)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998863
No 117
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.96 E-value=1.3e-27 Score=244.11 Aligned_cols=347 Identities=13% Similarity=0.104 Sum_probs=223.9
Q ss_pred EeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccc--cccccC-ChHHHHHHHHHHhh----CCCCCCEEEEeCC
Q 011777 91 FDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH--ATTIYL-HHAIADFAEALASK----MPGNLKVVYFVNS 163 (477)
Q Consensus 91 ~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~--~~~~~~-~~~~~~l~~~La~~----~~~~~~~v~~~~s 163 (477)
.+.+|+.+|||..|.+. + ..+|.|++|+.+++++... ....|. .....+|++.++++ ++.+.++|+|++|
T Consensus 51 ~~~~~~~~i~l~~~~~~--~-~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G 127 (432)
T 3ei9_A 51 LKYPDAQVISLGIGDTT--E-PIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDG 127 (432)
T ss_dssp HHCTTCCCEECSSCCCC--S-CCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESC
T ss_pred hcCCCCCeEEccCCCCC--C-CCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCC
Confidence 34468899999988653 2 5789999999999986432 112232 22345666666665 3556689999999
Q ss_pred hHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCC-CCCeeeecCCCCcCCCCCCCHHHHHHHHHH
Q 011777 164 GTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIP-QGEIHHVVNPDPYHGSFGSDAARYAQDLQD 242 (477)
Q Consensus 164 GseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 242 (477)
+++++..+..++ .+++.|++.+++|+++...+........+..... ...+..++... ...+. .++++
T Consensus 128 ~~~al~~l~~l~---~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~-------~~l~~ 195 (432)
T 3ei9_A 128 AKCDISRLQVMF---GSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTP--ENGFF-------PDLST 195 (432)
T ss_dssp HHHHHHHHHHHH---CTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCG--GGTTS-------CCGGG
T ss_pred hHHHHHHHHHHc---CCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCc--ccCCc-------CChhh
Confidence 999998743322 3678899999999998766544432211100000 01122222111 11111 12221
Q ss_pred HHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccc----cCCCcceee
Q 011777 243 HIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFET----QGVIPDIVT 318 (477)
Q Consensus 243 ~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~----~gv~pDivt 318 (477)
..++++|+++..+|++|. +++.+.+++|.++|++||++||+||+|++|.+.+ ...++.. .+....+.+
T Consensus 196 ------~~~~~~v~l~~p~NPtG~-~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~-~~~~~~~~~~~~~~~i~~~S 267 (432)
T 3ei9_A 196 ------VGRTDIIFFCSPNNPTGA-AATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDD-NPRSIFEIPGAEEVAMETAS 267 (432)
T ss_dssp ------CCCCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSS-CCSSGGGSTTGGGTEEEEEE
T ss_pred ------CCCCCEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHcCcEEEEccchHhhccCC-CCCChhhcCCCCCeEEEEec
Confidence 134555665555777774 5688889999999999999999999999987655 3333322 223344668
Q ss_pred eccccc-CccceEEEEeCHHH--------HHhhcccccccCCCCcHHHHHHHHHHHHhhc---hhhHHHHHHHHHHHHHH
Q 011777 319 MAKGIG-NGLPLGAVVTTPEI--------ANVMAQKIQFNTFGGNPVCSAGGLAVLRVID---KERRQAHCADVGSHLLG 386 (477)
Q Consensus 319 ~sK~lg-~G~pig~v~~~~~~--------~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~---~~~~~~~~~~~~~~l~~ 386 (477)
|||.+| .|+|+||+++++++ .+.+.......+++.++++++++.++++... .++..++++++.+++++
T Consensus 268 ~SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 347 (432)
T 3ei9_A 268 FSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIID 347 (432)
T ss_dssp SHHHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhccCCcccceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 999999 79999999999887 5666544444556788999999988875311 13455666666666666
Q ss_pred HHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHH-cCceeeccCCC----CCEEEEeCCCCCcHH
Q 011777 387 RLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRE-LGVLVGKGGLH----GNVFRIKPPMCFTKD 461 (477)
Q Consensus 387 ~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~p~~~~t~e 461 (477)
.|+++ +........|.++++.+.. ....++.+.|++ .||++.++..+ .+++||+ +..+++
T Consensus 348 ~L~~~----g~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis--~~~~~e 412 (432)
T 3ei9_A 348 TFTSL----GYDVYGGKNAPYVWVHFPN---------QSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVS--AFGHRE 412 (432)
T ss_dssp HHHHT----TCCEEECSSSSEEEEECTT---------SCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEE--CCSCHH
T ss_pred HHHHC----CceecCCCcceEEEEECCC---------CCHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEE--ecCCHH
Confidence 66553 3222222357788887731 013456666665 59999887432 4789997 567999
Q ss_pred HHHHHHHHHHHHHh
Q 011777 462 DADFLVDALDYSMS 475 (477)
Q Consensus 462 ~i~~~l~~l~~~l~ 475 (477)
+|++++++|++--+
T Consensus 413 ~l~~~l~rl~~~~~ 426 (432)
T 3ei9_A 413 NILEACRRFKQLYK 426 (432)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987543
No 118
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.96 E-value=1.8e-28 Score=250.33 Aligned_cols=345 Identities=12% Similarity=0.084 Sum_probs=229.7
Q ss_pred EEeecCCcccccCCCCCHHHHHHH--HHHHhhccccccccCC-hHHHHHHHHHHhhCCCCCCEEEEeCChHHHH--HHHH
Q 011777 98 YLDAFAGIVTVSCGHCHPDVLNAI--FEQSKLLQHATTIYLH-HAIADFAEALASKMPGNLKVVYFVNSGTEAN--ELAM 172 (477)
Q Consensus 98 ylD~~~g~~~~~lGh~~p~v~~Av--~~~l~~~~~~~~~~~~-~~~~~l~~~La~~~~~~~~~v~~~~sGseA~--~~Al 172 (477)
.+||..|.....+...++.+.+++ .+++.........|.. ....+|++.++++++.+.++|++|+|+++|+ +.++
T Consensus 35 ~i~~~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~ 114 (427)
T 3ppl_A 35 KLDLTRGKPSSEQLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVIS 114 (427)
T ss_dssp CEECCCCSCCHHHHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHH
T ss_pred eEecCCCCCChHHCCCcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHH
Confidence 578877765433322233455555 4444332111223433 3467888888888877778999999999999 5777
Q ss_pred HHHHhccC----------CceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHH
Q 011777 173 LMARLSTG----------NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQD 242 (477)
Q Consensus 173 ~~ar~~~~----------~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 242 (477)
+......+ ++.|++.+++|+++.......+ ...+.+|.... .++ +++|++
T Consensus 115 ~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~-g~d------~~~l~~ 174 (427)
T 3ppl_A 115 WSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFG-------------FEMISVPMNED-GPD------MDAVEE 174 (427)
T ss_dssp HHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTT-------------CEEEEEEEETT-EEC------HHHHHH
T ss_pred HHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcC-------------CEEEEeCCCCC-CCC------HHHHHH
Confidence 76544212 6889999999998765544332 12222211110 111 578888
Q ss_pred HHhccCCCCeeEEEecc-cCCCCCeeeCCchhHHHHHHHH-HHhCcEEEEcCcccCccCCCCC--C---ccc----cccC
Q 011777 243 HIDFGTSGKVAGFIAET-IQGVGGAVELAPGYLKLVYDIV-RKAGGVCIADEVQTGFGRTGSH--Y---WGF----ETQG 311 (477)
Q Consensus 243 ~i~~~~~~~~a~vi~ep-i~~~~G~~~~~~~~l~~l~~l~-~~~gillI~DEv~~gfgr~G~~--~---~~~----~~~g 311 (477)
+++ ..++++|+++| .+|++| ...+.+.+++|.++| ++||+++|+||+|+++.+.+.. . +.+ +..+
T Consensus 175 ~l~---~~~~~~v~~~p~~~NPtG-~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (427)
T 3ppl_A 175 LVK---NPQVKGMWVVPVFSNPTG-FTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPN 250 (427)
T ss_dssp HTT---STTEEEEEECCSSCTTTC-CCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTT
T ss_pred HHh---cCCCeEEEECCCCCCCCC-ccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCC
Confidence 774 35788998886 566677 455777799999999 9999999999999985444311 1 111 1345
Q ss_pred CCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhc---h--hhHHHHHHHHHHHHHH
Q 011777 312 VIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID---K--ERRQAHCADVGSHLLG 386 (477)
Q Consensus 312 v~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~---~--~~~~~~~~~~~~~l~~ 386 (477)
...++.+|||.+++|+|+||+++++++++.+.......+++.+++++.++.++++... + ++..+.++++.+.+.+
T Consensus 251 ~~i~~~S~SK~~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (427)
T 3ppl_A 251 RFWAFTSTSKITLAGAGVSFFLTSAENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLE 330 (427)
T ss_dssp SEEEEEESTTTSCTTSSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEechhhccCcCccEEEEEcCHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5666779999966799999999999999988776666788899999999888886411 1 1233444445555555
Q ss_pred HHHHHHHhCCCce-eeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC--------CCCCEEEEeCCCC
Q 011777 387 RLRTLQERHDIIG-DVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG--------LHGNVFRIKPPMC 457 (477)
Q Consensus 387 ~L~~l~~~~~~~~-~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--------~~~~~iRi~p~~~ 457 (477)
.|.+.....+.+. ..+..|+++++++... ...++.+.|.++||.+.+++ ...+++||+++..
T Consensus 331 ~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~---------~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~ 401 (427)
T 3ppl_A 331 ILDSRLAEYGVAQWTVPAGGYFISLDVVPG---------TASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLP 401 (427)
T ss_dssp HHHHHHGGGTCCEECCCSBSSCEEEECSTT---------CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSS
T ss_pred HHHHhcCCCCceEEeCCCccEEEEEECCcc---------hHHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCC
Confidence 5544332222222 2233578888887321 14567888999999999842 1357899988654
Q ss_pred CcHHHHHHHHHHHHHHHhh
Q 011777 458 FTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 458 ~t~e~i~~~l~~l~~~l~~ 476 (477)
++++|++++++|.+++++
T Consensus 402 -~~~~i~~~~~~l~~~l~~ 419 (427)
T 3ppl_A 402 -PVEELEVAMDGVATCVLL 419 (427)
T ss_dssp -CHHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHH
Confidence 899999999999998764
No 119
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.96 E-value=2.2e-27 Score=241.51 Aligned_cols=333 Identities=13% Similarity=0.109 Sum_probs=223.4
Q ss_pred eCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHh--hcc-c------cccccCChHHHHHHHHHHhhCCCCCCEEEEeC
Q 011777 92 DENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSK--LLQ-H------ATTIYLHHAIADFAEALASKMPGNLKVVYFVN 162 (477)
Q Consensus 92 d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~--~~~-~------~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~ 162 (477)
+.++..|||+.++ |+.+|+|++++.+++. ... . .......+...+++++|+++++.+.++|+|++
T Consensus 19 ~~~~~iyld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ 92 (423)
T 3lvm_A 19 AMKLPIYLDYSAT------TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTS 92 (423)
T ss_dssp -CCSSEECBTTTC------CCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEES
T ss_pred ccCCCEeecCCCc------CCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeC
Confidence 4567789997654 4679999999999887 321 1 01112235568899999999987777999999
Q ss_pred ChHHHHHHHHHHHHh-cc-CCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHH
Q 011777 163 SGTEANELAMLMARL-ST-GNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDL 240 (477)
Q Consensus 163 sGseA~~~Al~~ar~-~~-~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 240 (477)
||++|++++++.+.. +. +++.|++..++|++.......+.. .|...+.++......++ +++|
T Consensus 93 ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~----------~g~~~~~v~~~~~~~~d------~~~l 156 (423)
T 3lvm_A 93 GATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLER----------EGFEVTYLAPQRNGIID------LKEL 156 (423)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHH----------TTCEEEEECCCTTSCCC------HHHH
T ss_pred ChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHH----------cCCEEEEeccCCCCccC------HHHH
Confidence 999999999996653 23 368899999999987554432211 02222222221111122 5788
Q ss_pred HHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec
Q 011777 241 QDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA 320 (477)
Q Consensus 241 e~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s 320 (477)
+++++ +++++|+++++++++|.+.+ +++|.++|++||++||+||+|++ +.. ..+.....+|++++|
T Consensus 157 ~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~-~~~-----~~~~~~~~~di~~~s 222 (423)
T 3lvm_A 157 EAAMR----DDTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQSV-GKL-----PIDLSQLKVDLMSFS 222 (423)
T ss_dssp HHHCC----TTEEEEECCSBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTTT-TTS-----CCCTTTSCCSEEEEE
T ss_pred HHhcC----CCcEEEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEEhhhhc-CCC-----CcChhhcCCCEEEec
Confidence 88776 47899999999999998776 99999999999999999999873 221 123333457877655
Q ss_pred --ccccCccceEEEEeCHHHHHhhccccc-------ccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHH
Q 011777 321 --KGIGNGLPLGAVVTTPEIANVMAQKIQ-------FNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLR 389 (477)
Q Consensus 321 --K~lg~G~pig~v~~~~~~~~~~~~~~~-------~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~ 389 (477)
|.+| +.++|++++++++.+.+..... ..+.+.++.+++++.++++.+.+ +++.++++++.+++++.|+
T Consensus 223 ~sK~~g-~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~ 301 (423)
T 3lvm_A 223 GHKIYG-PKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIK 301 (423)
T ss_dssp STTTTS-CSSCEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHhcC-CCCeEEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9654 4459999999887766654332 22345678888888888887654 4555666666666666654
Q ss_pred HHHHhCCCceeeecc----ceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC-------------------
Q 011777 390 TLQERHDIIGDVRGR----GLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH------------------- 446 (477)
Q Consensus 390 ~l~~~~~~~~~v~g~----g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~------------------- 446 (477)
+ .+.+...... +.++.+.+.. . ....+.+.|.+ |.+.++..+
T Consensus 302 ~----~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~ 366 (423)
T 3lvm_A 302 D----IEEVYLNGDLEHGAPNILNVSFNY------V---EGESLIMALKD--LAVSSGSACTSASLEPSYVLRALGLNDE 366 (423)
T ss_dssp T----STTEEEESCSTTBCTTEEEEEETT------S---CHHHHHHHTTT--EECBCCCC-----CCCCHHHHHHTCCHH
T ss_pred c----CCCEEEeCCccccCCCeEEEEeCC------C---CHHHHHHHHhh--heeccCccccCCCccccHHHHHhCCCcc
Confidence 3 3323222221 3455665521 1 13456666665 777664210
Q ss_pred --CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 447 --GNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 447 --~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
.+++||+++..++++|+++++++|++++++
T Consensus 367 ~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~ 398 (423)
T 3lvm_A 367 LAHSSIRFSLGRFTTEEEIDYTIELVRKSIGR 398 (423)
T ss_dssp HHHTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999998864
No 120
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.96 E-value=3.6e-27 Score=236.35 Aligned_cols=331 Identities=15% Similarity=0.150 Sum_probs=222.7
Q ss_pred EEEeecCCcccccCCCCCHHHHHHHHHHHhhcc-cccc-----ccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHH
Q 011777 97 RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ-HATT-----IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANEL 170 (477)
Q Consensus 97 ~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~-~~~~-----~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~ 170 (477)
.|||+.++ |+.+|+|.+++.+++.... .... ........+++++|+++++.+.+++++++||++|++.
T Consensus 3 ~yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~ 76 (384)
T 1eg5_A 3 VYFDNNAT------TRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINW 76 (384)
T ss_dssp EECBTTTC------CCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHH
T ss_pred EEEecCcc------CCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHH
Confidence 58887653 4789999999999987531 1110 0113446789999999987666789999999999999
Q ss_pred HHHHHHh--ccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777 171 AMLMARL--STGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT 248 (477)
Q Consensus 171 Al~~ar~--~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~ 248 (477)
+++.++. ..+++.|++.+++||+.......+... |...+.+|.......+ .++|++.++
T Consensus 77 ~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~----------g~~~~~v~~~~~~~~d------~~~l~~~i~--- 137 (384)
T 1eg5_A 77 ILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMK----------GFKVKYVPVDSRGVVK------LEELEKLVD--- 137 (384)
T ss_dssp HHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHT----------TCEEEECCBCTTSCBC------HHHHHHHCC---
T ss_pred HHHhhhhhccCCCCEEEECCCCchHHHHHHHHHHhc----------CCEEEEEccCCCCccC------HHHHHHHhC---
Confidence 9998763 135678999999999865443211100 1122222211111111 477888775
Q ss_pred CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhC--cEEEEcCcccCccCCCCCCccccccCCCcceeeec--cccc
Q 011777 249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAG--GVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA--KGIG 324 (477)
Q Consensus 249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g--illI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s--K~lg 324 (477)
+++++|+++++++++|.+.+ +++|.++|++|| +++|+||+|+ ||.. .+.++ ...+|++++| |.+|
T Consensus 138 -~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~li~Dea~~-~~~~---~~~~~--~~~~di~~~s~sK~~g 206 (384)
T 1eg5_A 138 -EDTFLVSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKI---PFSLE--KLEVDYASFSAHKFHG 206 (384)
T ss_dssp -TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTS---CCCCT--TTCCSEEEEEGGGGTS
T ss_pred -CCCeEEEEECCCCCcccccC----HHHHHHHHHhcCCceEEEEEhhhh-cCCc---ccCch--hcCCCEEEecHHHhcC
Confidence 36888989998899997776 899999999999 9999999997 6532 22222 2346877655 9876
Q ss_pred C-ccceEEEEeCHHH--HHhhccc---ccccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHhCC
Q 011777 325 N-GLPLGAVVTTPEI--ANVMAQK---IQFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQERHD 396 (477)
Q Consensus 325 ~-G~pig~v~~~~~~--~~~~~~~---~~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~ 396 (477)
. | +|++++++++ ...+... ....+++.|+++++++.++|+.+.+ ++..++++++.+++.+.|++. ...
T Consensus 207 ~~G--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~ 282 (384)
T 1eg5_A 207 PKG--VGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNL--GAH 282 (384)
T ss_dssp CTT--CEEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTT--TCE
T ss_pred CCc--eEEEEEcCCCccccccccCcccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCC--CeE
Confidence 4 5 7999999876 2222211 1124567889999999999987533 456667777777777777652 111
Q ss_pred Cceeeec-cceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC---------------------CCEEEEeC
Q 011777 397 IIGDVRG-RGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH---------------------GNVFRIKP 454 (477)
Q Consensus 397 ~~~~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~---------------------~~~iRi~p 454 (477)
......+ .+.++++.+.. . ...++.+.|.++||.+.++..+ .+++||++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~ 353 (384)
T 1eg5_A 283 IITPLEISLPNTLSVSFPN------I---RGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISL 353 (384)
T ss_dssp ECSCTTSBCTTEEEEECTT------C---CHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEEC
T ss_pred EeCCcccCCCCEEEEEeCC------C---CHHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEEC
Confidence 1111111 24455665421 0 1356788889999999885321 36899998
Q ss_pred CCCCcHHHHHHHHHHHHHHHhh
Q 011777 455 PMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 455 ~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
+..++++|+++++++|++++++
T Consensus 354 ~~~~~~~~i~~~~~~l~~~~~~ 375 (384)
T 1eg5_A 354 CKYNTEEEVDYFLKKIEEILSF 375 (384)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 8889999999999999998875
No 121
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.96 E-value=2e-27 Score=241.67 Aligned_cols=342 Identities=9% Similarity=-0.023 Sum_probs=218.8
Q ss_pred CCEEEeecCCccc---ccCCCCCHHHHHHHHHHHhhc--cccccccCChHHHHHHHHHHhhCCC-CCCEEEEeCChHHHH
Q 011777 95 GRRYLDAFAGIVT---VSCGHCHPDVLNAIFEQSKLL--QHATTIYLHHAIADFAEALASKMPG-NLKVVYFVNSGTEAN 168 (477)
Q Consensus 95 G~~ylD~~~g~~~---~~lGh~~p~v~~Av~~~l~~~--~~~~~~~~~~~~~~l~~~La~~~~~-~~~~v~~~~sGseA~ 168 (477)
|..+|||..|.+. ..+. .++.|.+++.+..... .+....+..+.++.+++++...... ..++|++|+||++|+
T Consensus 37 ~~~~i~l~~g~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al 115 (418)
T 3rq1_A 37 RENVVNGTLGAIHDEEGNLV-FLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGI 115 (418)
T ss_dssp GGGCEECCSSCCBCTTSCBC-CCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHH
T ss_pred CCCeEECCCCcccCCCCCcc-ccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhcccCccccccEEECCchHHHH
Confidence 4456777766541 1222 5678888876644321 1211122334455666656554321 122899999999999
Q ss_pred HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc-
Q 011777 169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG- 247 (477)
Q Consensus 169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~- 247 (477)
+.+++... .+++.|++.+++|+++.......+ ...+.+|..... +..| ++++++.++..
T Consensus 116 ~~~~~~l~--~~gd~Vl~~~p~~~~~~~~~~~~g-------------~~~~~v~~~~~~-~~~d----~~~l~~~l~~~~ 175 (418)
T 3rq1_A 116 HHLIHNYT--EPGDEVLTADWYWGAYRVICSDTG-------------RTLVTYSLFDEH-NNFN----HEAFQNRVNELA 175 (418)
T ss_dssp HHHHHHHS--CTTCEEEEESSCCTHHHHHHHHTT-------------CEEEEECSBCTT-SSBC----HHHHHHHHHHHH
T ss_pred HHHHHHhc--CCCCEEEECCCCchhHHHHHHHcC-------------CEEEEEeeeCCC-CCcC----HHHHHHHHHHhh
Confidence 99998653 356889999999998766544332 222222211111 1112 47777777621
Q ss_pred CCCCeeEEEec-ccCCCCCeeeCCchhHHHHHHHHH------HhCcEEEEcCcccCccCCCCC--CccccccCCCcc---
Q 011777 248 TSGKVAGFIAE-TIQGVGGAVELAPGYLKLVYDIVR------KAGGVCIADEVQTGFGRTGSH--YWGFETQGVIPD--- 315 (477)
Q Consensus 248 ~~~~~a~vi~e-pi~~~~G~~~~~~~~l~~l~~l~~------~~gillI~DEv~~gfgr~G~~--~~~~~~~gv~pD--- 315 (477)
.++..++++++ |.+|++|. .++.+.+++|.++|+ +||+++|+||+|.+|++.|.. .+.....++.+|
T Consensus 176 ~~~~~~~vi~~~p~~NPtG~-~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (418)
T 3rq1_A 176 AKQTNVVVIFNTPGNNPTGY-SIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILT 254 (418)
T ss_dssp HHCSEEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEE
T ss_pred ccCCCEEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceE
Confidence 01234466666 53777784 557788999999999 899999999999999877621 122233455555
Q ss_pred ee--eeccccc-CccceEEEEe---CHHHHHhhccccc---cc-CCCCcHHHHHHHHHHHHhhc------h--hhHHHHH
Q 011777 316 IV--TMAKGIG-NGLPLGAVVT---TPEIANVMAQKIQ---FN-TFGGNPVCSAGGLAVLRVID------K--ERRQAHC 377 (477)
Q Consensus 316 iv--t~sK~lg-~G~pig~v~~---~~~~~~~~~~~~~---~~-t~~~~~~~~aaa~a~l~~l~------~--~~~~~~~ 377 (477)
++ +|||.++ .|+|+||+++ ++++++.+..... .+ ..+.+.++++++.++|+..+ + +++.+++
T Consensus 255 i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 334 (418)
T 3rq1_A 255 CVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLI 334 (418)
T ss_dssp EEEEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 22 7999998 5999999999 8999888765321 12 23578888888888875431 0 1344556
Q ss_pred HHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCC
Q 011777 378 ADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMC 457 (477)
Q Consensus 378 ~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~ 457 (477)
+++.+++.+.|+++ .... .....|.++++.+. ...++.+.|.++||++.++ ++++||+.. .
T Consensus 335 ~~~~~~l~~~L~~~--g~~~--~~~~~~~~~~~~~~-----------~~~~~~~~l~~~gi~v~~g---~~~iRis~~-~ 395 (418)
T 3rq1_A 335 RDRADIFKQEAAQV--GLPM--LPYRGGFFITIPTD-----------SANAICEELKKEHIYVIAL---ANGIRIAAC-G 395 (418)
T ss_dssp HHHHHHHHHHHHHH--TCCC--CCCCSSSEEEEECT-----------THHHHHHHHHHTTEECEEC---SSEEEEEGG-G
T ss_pred HHHHHHHHHHHHhc--CCCC--CCCCceEEEEcCCC-----------CHHHHHHHHHhCCEEEecC---CCCeEEEEe-c
Confidence 66666676766665 2222 12233455555441 1356778899999999987 468999854 4
Q ss_pred CcHHHHHHHHHHHHHHHhhC
Q 011777 458 FTKDDADFLVDALDYSMSKL 477 (477)
Q Consensus 458 ~t~e~i~~~l~~l~~~l~~l 477 (477)
++++++++++++|+++++++
T Consensus 396 ~~~~~i~~~~~~l~~~l~~~ 415 (418)
T 3rq1_A 396 IPKCQMTGLAEKIYNAMKSL 415 (418)
T ss_dssp SCHHHHTTHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 69999999999999998753
No 122
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.96 E-value=4.1e-27 Score=239.03 Aligned_cols=337 Identities=12% Similarity=0.043 Sum_probs=213.0
Q ss_pred CCEEEeecCCcccccCCC--CCHHHHHHHHHHHhh--ccccccccCChHHHHHHHHHHhhC-CCCCCEEEEeCChHHHHH
Q 011777 95 GRRYLDAFAGIVTVSCGH--CHPDVLNAIFEQSKL--LQHATTIYLHHAIADFAEALASKM-PGNLKVVYFVNSGTEANE 169 (477)
Q Consensus 95 G~~ylD~~~g~~~~~lGh--~~p~v~~Av~~~l~~--~~~~~~~~~~~~~~~l~~~La~~~-~~~~~~v~~~~sGseA~~ 169 (477)
|+.+|||..|.+..+-|+ .++.|.+++.+.... ..+....+..+.++++++++.+.. +.+.+++++|+||++|++
T Consensus 36 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~~~~~~~~i~~t~g~~~al~ 115 (413)
T 3t18_A 36 REAVINAALGTLLDDKGKIIALPSVYDRLDEMDRSHIASYAPIEGEKDYRKIVIDTLFGPYKPEGYISAIATPGGTGAIR 115 (413)
T ss_dssp GGGCEECCSCCCBCTTSCBCCCHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHH
T ss_pred ccceEeccccCccCCCCCcCChHHHHHHHHhcCcccccCcCCCCCCHHHHHHHHHHHhcccCccccCcEEEcCccHHHHH
Confidence 456788887765333333 567888887663322 122222233455667777676554 223348999999999999
Q ss_pred HHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc-C
Q 011777 170 LAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG-T 248 (477)
Q Consensus 170 ~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~-~ 248 (477)
.+++... .+++.|++.+++|+++.......+ ...+.+|..... ++.| +++|++.++.. .
T Consensus 116 ~~~~~~~--~~gd~Vl~~~p~~~~~~~~~~~~g-------------~~~~~~~~~~~~-~~~d----~~~l~~~l~~~~~ 175 (413)
T 3t18_A 116 SAIFSYL--DEGDPLICHDYYWAPYRKICEEFG-------------RNFKTFEFFTDD-FAFN----IDVYKEAIDEGIR 175 (413)
T ss_dssp HHHHHHC--CSSCEEEEESSCCTHHHHHHHHHT-------------CEEEEECCBCTT-SSBC----HHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCEEEECCCCcccHHHHHHHhC-------------CeEEEeeccCCC-CCcC----HHHHHHHHHHHhh
Confidence 9998653 356789999999988765543332 222222221111 1212 47787777621 0
Q ss_pred CCCeeEEEeccc-CCCCCeeeCCchhHHHHHHHHH------HhCcEEEEcCcccCccCCCCCCcc--ccccCCCcce---
Q 011777 249 SGKVAGFIAETI-QGVGGAVELAPGYLKLVYDIVR------KAGGVCIADEVQTGFGRTGSHYWG--FETQGVIPDI--- 316 (477)
Q Consensus 249 ~~~~a~vi~epi-~~~~G~~~~~~~~l~~l~~l~~------~~gillI~DEv~~gfgr~G~~~~~--~~~~gv~pDi--- 316 (477)
++..+++++++. +|++|. .++.+.+++|.++|+ +||++||+||+|.+|+++|..... ....++.+++
T Consensus 176 ~~~~~~vi~~~p~~NPtG~-~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i 254 (413)
T 3t18_A 176 DSDRIASLINSPGNNPTGY-SLSDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFAGDGDQQRKFFEKFSNLPRNLFVV 254 (413)
T ss_dssp HCSEEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHTTSTTCEEEEEEECTTGGGSSSSSTTTGGGGGGTTCCTTEEEE
T ss_pred cCCCEEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHHhhccCCcEEEEEecccccccCChhhHHHHHHHHhhcCCCeeEE
Confidence 123446666644 788884 557788999999999 899999999999999988732222 2233455552
Q ss_pred e--eeccccc-CccceEEEEe---CHHHHHhhcccccc----cCCCCcHHHHHHHHHHHHhhc-----h--hhHHHHHHH
Q 011777 317 V--TMAKGIG-NGLPLGAVVT---TPEIANVMAQKIQF----NTFGGNPVCSAGGLAVLRVID-----K--ERRQAHCAD 379 (477)
Q Consensus 317 v--t~sK~lg-~G~pig~v~~---~~~~~~~~~~~~~~----~t~~~~~~~~aaa~a~l~~l~-----~--~~~~~~~~~ 379 (477)
+ +|||.++ .|+|+||+++ ++++++.+...... .+.+.++++++++.++++..+ + +.+.+++++
T Consensus 255 ~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 334 (413)
T 3t18_A 255 VAFSMSKSHTAYGLRSGAAVGISSSKEIIEEFEASLAHSARCNWSNGTHAAQNILIELERAENKKIYEQELVDLRNMLKS 334 (413)
T ss_dssp EEEEHHHHTTCGGGCCEEEEEEESCHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCccCCCcCcCcEEEEEecCCHHHHHHHHHHHHHhhhccccCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 2 7999999 7999999999 99999887654221 224578888888887775321 0 123445555
Q ss_pred HHHHHHHHHHHHHHhCCCceeeecc-ceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCC
Q 011777 380 VGSHLLGRLRTLQERHDIIGDVRGR-GLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCF 458 (477)
Q Consensus 380 ~~~~l~~~L~~l~~~~~~~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~ 458 (477)
+.+++.+.|+++ +. ....+. |.++++++. ...++.+.|.++||++.++ ++++||+++...
T Consensus 335 ~~~~l~~~l~~~----g~-~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~gv~v~~g---~~~iRis~~~~~ 395 (413)
T 3t18_A 335 RADVFVTAAKEN----KL-TMIPYFGGFFTFIPTD-----------KAFDIVKDLEKENIFTIPS---AKGIRVAICGVG 395 (413)
T ss_dssp HHHHHHHHHHHT----TC-CCBCCCSSSCEEEECS-----------CHHHHHHHHHHTTEECEEC---SSEEEECTTTSC
T ss_pred HHHHHHHHHHHc----CC-CccCCCceEEEEeCCC-----------CHHHHHHHHHhCCEEEecC---CCceEEEEeeCC
Confidence 555565555543 32 222333 455565441 1356778889999999986 578999887544
Q ss_pred cHHHHHHHHHHHHHHHh
Q 011777 459 TKDDADFLVDALDYSMS 475 (477)
Q Consensus 459 t~e~i~~~l~~l~~~l~ 475 (477)
++++ +++|.++++
T Consensus 396 -~~~~---l~~l~~~l~ 408 (413)
T 3t18_A 396 -EEKI---PKLVQRLAF 408 (413)
T ss_dssp -GGGH---HHHHHHHHH
T ss_pred -HHHH---HHHHHHHHH
Confidence 4444 666666654
No 123
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.96 E-value=2.3e-27 Score=243.25 Aligned_cols=351 Identities=11% Similarity=0.034 Sum_probs=219.9
Q ss_pred CEEE-eecCCcccccCCCCCHHHHHHHHHHHhhcccc-------c------cccCC-hHHHHHHHHHHhhC------CCC
Q 011777 96 RRYL-DAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA-------T------TIYLH-HAIADFAEALASKM------PGN 154 (477)
Q Consensus 96 ~~yl-D~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~-------~------~~~~~-~~~~~l~~~La~~~------~~~ 154 (477)
..+| ||..|... ..|.+.+++.+++.+.... . ..|.. ....++++.+++++ +.+
T Consensus 31 ~~~i~~l~~g~p~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~ 105 (444)
T 3if2_A 31 DQPVNMLGGGNPA-----KIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLT 105 (444)
T ss_dssp SSCCEECSCCCCC-----CCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCC
T ss_pred chhhhccCCCCCC-----cccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCC
Confidence 3466 77666542 2466666666655542111 0 12322 22345555555554 456
Q ss_pred CCEEEEeCChHHHHHHHHHHHHhccCCc--------------eEEEE-ccCccCCcccccccccCCCCCCCCCCCCeeee
Q 011777 155 LKVVYFVNSGTEANELAMLMARLSTGNL--------------GMIAL-RNAYHGGSSGTIGLTALNTWKYPIPQGEIHHV 219 (477)
Q Consensus 155 ~~~v~~~~sGseA~~~Al~~ar~~~~~~--------------~ii~~-~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (477)
.++|+||+||++|++++++.+.. .++ .||+. .++|+++........... ..+...+
T Consensus 106 ~~~i~~t~G~t~al~~~~~~l~~--~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~-------~~~~~~~ 176 (444)
T 3if2_A 106 SENIALTNGSQNAFFYLFNLFGG--AFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFA-------AVLPHID 176 (444)
T ss_dssp GGGEEEESSHHHHHHHHHHHSSE--EEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEE-------ECCCEEE
T ss_pred HHHEEEecCcHHHHHHHHHHHhC--CCccccccccccccccceEEEeCCCCccchhhcccccchhh-------ccCceEE
Confidence 68999999999999999987643 222 46654 889998765432111000 0122222
Q ss_pred cCCCCc-CC--CCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccC
Q 011777 220 VNPDPY-HG--SFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTG 296 (477)
Q Consensus 220 ~~~~~~-~~--~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g 296 (477)
+++... .+ .+..| +++|+++++... .++++|+++..+|++|. +.+.+.+++|.++|++||++||+||+|..
T Consensus 177 ~~~~~~~~g~~~~~~d----~~~l~~~l~~~~-~~~~~v~i~~p~nptG~-~~~~~~l~~i~~~a~~~~~~li~De~~~~ 250 (444)
T 3if2_A 177 EVTHDGEEGFFKYRVD----FEALENLPALKE-GRIGAICCSRPTNPTGN-VLTDEEMAHLAEIAKRYDIPLIIDNAYGM 250 (444)
T ss_dssp EEEETTEEEEEEEECC----HHHHHTCHHHHT-TCEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCCEEEECTTCT
T ss_pred ecccccccCccccCCC----HHHHHHHHHhcC-CCceEEEeCCCCCCCCC-cCCHHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 211100 00 01111 477877643211 45677777655677775 55788899999999999999999999974
Q ss_pred ccCCCCCCccc--cccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchh---
Q 011777 297 FGRTGSHYWGF--ETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKE--- 371 (477)
Q Consensus 297 fgr~G~~~~~~--~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~--- 371 (477)
+. .+..+... ...+...++.++||...+|+|+||+++++++++.+....+..+++.++++++++.+.++.....
T Consensus 251 ~~-~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 329 (444)
T 3if2_A 251 PF-PNIIYSDAHLNWDNNTILCFSLSKIGLPGMRTGIIVADAKVIEAVSAMNAVVNLAPTRFGAAIATPLVANDRIKQLS 329 (444)
T ss_dssp TT-TCCBCSCCCCCCCTTEEEEEESTTTTCGGGCCEEEECCHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHTSHHHHHH
T ss_pred cc-cccccccccccCCCCEEEEechhhccCCCCceEEEEECHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcCchhHHH
Confidence 31 11011111 2234556677899985569999999999999998877666677888999999998888753321
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC---
Q 011777 372 --RRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH--- 446 (477)
Q Consensus 372 --~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--- 446 (477)
.+.++++++.+.+.+.|.+.....++....+..|+++++++.... ....++.+.|.++||.+.++..+
T Consensus 330 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~l~~~l~~~gi~v~~g~~~~~~ 402 (444)
T 3if2_A 330 DNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLP-------ISTLDLYERLKAKGTLIVPSEYFFPG 402 (444)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCS-------SCHHHHHHHHHHTTEECEEGGGSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCC-------CCHHHHHHHHHHCCeEEecchhhcCC
Confidence 134445555566666665533222222223456788888874210 12456788899999999987432
Q ss_pred ---------CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 447 ---------GNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 447 ---------~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
.+++||+++. ++++|++++++|.+++++
T Consensus 403 ~~~~~~~~~~~~iRis~~~--~~e~i~~~l~~l~~~~~~ 439 (444)
T 3if2_A 403 VDVSDYQHAHECIRMSIAA--DEQTLIDGIKVIGEVVRE 439 (444)
T ss_dssp CCCTTCSGGGSEEEEESSS--CHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccCCCeEEEEEeC--CHHHHHHHHHHHHHHHHH
Confidence 1589999886 999999999999998864
No 124
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.96 E-value=5.9e-27 Score=237.80 Aligned_cols=331 Identities=12% Similarity=0.029 Sum_probs=230.3
Q ss_pred CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc-cccc--c---cCChHHHHHHHHHHhhCCCCCCEEEEeCChHHH
Q 011777 94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ-HATT--I---YLHHAIADFAEALASKMPGNLKVVYFVNSGTEA 167 (477)
Q Consensus 94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~-~~~~--~---~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA 167 (477)
+|..|||+.+ .|+.+|+|.+++.+++.... +... . ...+...+++++|+++++.+.++|+|++||+++
T Consensus 27 ~~~~yld~~~------~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 100 (416)
T 1qz9_A 27 EGVIYLDGNS------LGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSIN 100 (416)
T ss_dssp TTCEECCTTT------SCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHH
T ss_pred CCeEeecCCC------cCCCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHH
Confidence 5789999754 35788999999999987531 1111 1 123567899999999998766789999999999
Q ss_pred HHHHHHHHHhc----cCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHH
Q 011777 168 NELAMLMARLS----TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDH 243 (477)
Q Consensus 168 ~~~Al~~ar~~----~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~ 243 (477)
++.+++.++.. .+++++|++.+.+|+.....+...... .. .|...+.++. +++|+++
T Consensus 101 l~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~-~~-----~g~~~~~v~~-------------~~~l~~~ 161 (416)
T 1qz9_A 101 LFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADM-LQ-----QGYTLRLVDS-------------PEELPQA 161 (416)
T ss_dssp HHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHH-HC-----SSCEEEEESS-------------GGGHHHH
T ss_pred HHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHH-hc-----CCceEEEeCc-------------HHHHHHH
Confidence 99999977533 345567777777887543322110000 00 0112222111 2677777
Q ss_pred HhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeee--cc
Q 011777 244 IDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTM--AK 321 (477)
Q Consensus 244 i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~--sK 321 (477)
++ +++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ +|... +..+.+ .+|++++ +|
T Consensus 162 i~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~---~~~~~~--~~d~~~~s~~K 227 (416)
T 1qz9_A 162 ID----QDTAVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHS-AGAVP---VDLHQA--GADYAIGCTYK 227 (416)
T ss_dssp CS----TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSC---CCHHHH--TCSEEEECSSS
T ss_pred hC----CCceEEEEeccccCcccccC----HHHHHHHHHHcCCEEEEEcccc-ccCcC---CChhhc--CCCEEEecCcc
Confidence 75 46889999999999998776 8999999999999999999997 44322 222223 3677765 59
Q ss_pred cccCccce-EEEEeCHHHHHhhcccccc-----------------------cCCCCcHHHHHHHHHHHHhhch---hhHH
Q 011777 322 GIGNGLPL-GAVVTTPEIANVMAQKIQF-----------------------NTFGGNPVCSAGGLAVLRVIDK---ERRQ 374 (477)
Q Consensus 322 ~lg~G~pi-g~v~~~~~~~~~~~~~~~~-----------------------~t~~~~~~~~aaa~a~l~~l~~---~~~~ 374 (477)
.+++|.++ |++++++++++.+.....+ ..++.|+.+++++.++++.+.+ +++.
T Consensus 228 ~l~~g~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~ 307 (416)
T 1qz9_A 228 YLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLR 307 (416)
T ss_dssp TTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cCCCCCCCeEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99888888 9999999987766542111 1234678888888889987753 4577
Q ss_pred HHHHHHHHHHHHHHHHHHH--hCCCceee--eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEE
Q 011777 375 AHCADVGSHLLGRLRTLQE--RHDIIGDV--RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVF 450 (477)
Q Consensus 375 ~~~~~~~~~l~~~L~~l~~--~~~~~~~v--~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~i 450 (477)
++++++.+++.+.|+++.. ........ ...+.++++.+. . ..++.+.|.++||.+...+ .+++
T Consensus 308 ~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--------~---~~~l~~~l~~~gi~~~~~~--~~~l 374 (416)
T 1qz9_A 308 RKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP--------E---GYAVIQALIDRGVIGDYRE--PRIM 374 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT--------T---HHHHHHHHHTTTEECEEET--TTEE
T ss_pred HHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecC--------C---HHHHHHHHHhCCcEeccCC--CCeE
Confidence 8888888899888877532 12111111 023567777652 1 3568888999999986532 6799
Q ss_pred EEeCC-CCCcHHHHHHHHHHHHHHHhh
Q 011777 451 RIKPP-MCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 451 Ri~p~-~~~t~e~i~~~l~~l~~~l~~ 476 (477)
||+++ +.++++|+++++++|++++++
T Consensus 375 Ris~~~~~~t~~~i~~~~~~l~~~~~~ 401 (416)
T 1qz9_A 375 RFGFTPLYTTFTEVWDAVQILGEILDR 401 (416)
T ss_dssp EEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEeCcccCCCHHHHHHHHHHHHHHHhc
Confidence 99987 588999999999999998864
No 125
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.95 E-value=5e-27 Score=233.57 Aligned_cols=332 Identities=16% Similarity=0.145 Sum_probs=224.2
Q ss_pred EEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCC--CCEEEEeCChHHHHHHHHHHH
Q 011777 98 YLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGN--LKVVYFVNSGTEANELAMLMA 175 (477)
Q Consensus 98 ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~--~~~v~~~~sGseA~~~Al~~a 175 (477)
++||..|. ++ .+|+|++|+.+++ .+....+..+...+++++|+++++.. .+++++++||++|++.+++.+
T Consensus 5 ~~~~~~gp----~~-~~~~v~~a~~~~~---~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~ 76 (366)
T 1m32_A 5 YLLLTPGP----LT-TSRTVKEAMLFDS---CTWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSA 76 (366)
T ss_dssp CEECSSSS----CC-CCHHHHHTTCCCC---CTTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHS
T ss_pred cccccCCC----cC-CCHHHHHHHhhhh---cCCCHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHh
Confidence 67877762 33 7899999997753 22211112256788999999988622 247999999999999999976
Q ss_pred HhccCCceEEEEccCccCCccc-ccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeE
Q 011777 176 RLSTGNLGMIALRNAYHGGSSG-TIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAG 254 (477)
Q Consensus 176 r~~~~~~~ii~~~~~yhG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~ 254 (477)
+. ++++|+++++.||+.... .....+. .+..++... .... | .++|+++++.. .++++
T Consensus 77 ~~--~gd~vi~~~~~~~~~~~~~~~~~~g~----------~~~~v~~~~--~~~~--d----~~~l~~~l~~~--~~~~~ 134 (366)
T 1m32_A 77 LG--PQDKVLIVSNGAYGARMVEMAGLMGI----------AHHAYDCGE--VARP--D----VQAIDAILNAD--PTISH 134 (366)
T ss_dssp CC--TTCCEEEEESSHHHHHHHHHHHHHTC----------CEEEEECCT--TSCC--C----HHHHHHHHHHC--TTCCE
T ss_pred cC--CCCeEEEEeCCCccHHHHHHHHHhCC----------ceEEEeCCC--CCCC--C----HHHHHHHHhcC--CCeEE
Confidence 43 556788888888875321 1111111 122222211 1111 2 57888888732 24566
Q ss_pred EEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCccee--eecccccCccceEEE
Q 011777 255 FIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGNGLPLGAV 332 (477)
Q Consensus 255 vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~G~pig~v 332 (477)
|++...++++|.+.+ +++|.++|++||+++|+||+|+ ++..+ +.++. ..+|++ +++|+++++.++|++
T Consensus 135 v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~~~~~---~~~~~--~~~di~~~s~~K~~~~~~g~G~~ 204 (366)
T 1m32_A 135 IAMVHSETTTGMLNP----IDEVGALAHRYGKTYIVDAMSS-FGGIP---MDIAA--LHIDYLISSANKCIQGVPGFAFV 204 (366)
T ss_dssp EEEESEETTTTEECC----HHHHHHHHHHHTCEEEEECTTT-TTTSC---CCTTT--TTCSEEEEESSSTTCCCSSEEEE
T ss_pred EEEecccCCcceecC----HHHHHHHHHHcCCEEEEECCcc-ccCcC---ccccc--cCccEEEecCcccccCCCceEEE
Confidence 666666677787776 8999999999999999999997 44322 22222 236766 578999877778999
Q ss_pred EeCHHHHHhhccccc------------------ccCCCCcHHHHHHHHHHHHhhchh----hHHHHHHHHHHHHHHHHHH
Q 011777 333 VTTPEIANVMAQKIQ------------------FNTFGGNPVCSAGGLAVLRVIDKE----RRQAHCADVGSHLLGRLRT 390 (477)
Q Consensus 333 ~~~~~~~~~~~~~~~------------------~~t~~~~~~~~aaa~a~l~~l~~~----~~~~~~~~~~~~l~~~L~~ 390 (477)
++++++++.+..... ...++.|+.+++++.++++.+.+. +..++++++.+++.+.|++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~ 284 (366)
T 1m32_A 205 IAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRA 284 (366)
T ss_dssp EEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHH
Confidence 999999877654210 013677889999999999876543 4677778888888888876
Q ss_pred HHHhCCCceee-eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC-CCCEEEEeCCCCCcHHHHHHHHH
Q 011777 391 LQERHDIIGDV-RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL-HGNVFRIKPPMCFTKDDADFLVD 468 (477)
Q Consensus 391 l~~~~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~~iRi~p~~~~t~e~i~~~l~ 468 (477)
+ ........ ...|.++++.+.... .....++.+.|.++||.+.++.. ..+++||+++..++++|++++++
T Consensus 285 ~--~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~ 356 (366)
T 1m32_A 285 L--GFNTLLDDELHSPIITAFYSPEDP------QYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLT 356 (366)
T ss_dssp T--TCCBSSCGGGBCSSEEEEECCCCT------TCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHH
T ss_pred C--CCeeccCchhcCceEEEEEcCccC------CCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHH
Confidence 5 23222211 124567788763200 11245788899999999988643 35789999999999999999999
Q ss_pred HHHHHHhhC
Q 011777 469 ALDYSMSKL 477 (477)
Q Consensus 469 ~l~~~l~~l 477 (477)
+|+++++++
T Consensus 357 ~l~~~~~~~ 365 (366)
T 1m32_A 357 AIRTAMYWT 365 (366)
T ss_dssp HHHHHCTTC
T ss_pred HHHHHHHhc
Confidence 999988653
No 126
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.95 E-value=3.5e-27 Score=236.96 Aligned_cols=332 Identities=14% Similarity=0.060 Sum_probs=224.3
Q ss_pred EEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHH
Q 011777 89 YLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEAN 168 (477)
Q Consensus 89 ~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~ 168 (477)
.++|.|++.+.++...++..+++|..++..+.+ .+++++++++++.+ +.++|++|||+|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~-------------------~~~~~~l~~~~~~~-~~v~~~~sgt~a~ 64 (379)
T 3ke3_A 5 LRQDIDPNGLLEYSVVYTDRALNHMSKAFQEVM-------------------NDLLSNLKTVYNAE-AAVIIPGSGTYGM 64 (379)
T ss_dssp ---CCSTTSCCCCCSSCCTTSCCTTSHHHHHHH-------------------HHHHHHHHHHHTCS-EEEEEESCHHHHH
T ss_pred hhccCCHHHHHHHHHhccCCCCCCCCHHHHHHH-------------------HHHHHHHHHHhCCC-CEEEEcCChhHHH
Confidence 467999999999987776666788777655433 34556677777655 6899999999999
Q ss_pred HHHHHHHHhccCCceEEEEccCccCCcccccccc-cCCCCCCCCCCCCeeeecCCC----CcCCCC-CCCHHHHHHHHHH
Q 011777 169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLT-ALNTWKYPIPQGEIHHVVNPD----PYHGSF-GSDAARYAQDLQD 242 (477)
Q Consensus 169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~le~ 242 (477)
+++++.+ .++++||+++++|||.....+... +.. ..+..++.+. .++.++ ..| ++++++
T Consensus 65 ~~~~~~~---~~gd~vi~~~~~~~~~~~~~~~~~~g~~--------~~~~~~~~~~~g~~~~~~~~~~~d----~~~l~~ 129 (379)
T 3ke3_A 65 EAVARQL---TIDEDCLIIRNGWFSYRWTQILEKGKFA--------KSSTVLTAERTEDTEAPKPFAPVD----IETAVA 129 (379)
T ss_dssp HHHHHHH---CTTCEEEEEECSHHHHHHHHHHHHHCCS--------SEEEEEECEESSCCSSCCCEECCC----HHHHHH
T ss_pred HHHHHhC---CCCCeEEEEeCCchhHHHHHHHHHhCCC--------CceEEEeccccccccccCCCCCCC----HHHHHH
Confidence 9988643 467899999999998754332221 100 0112222110 111111 011 578888
Q ss_pred HHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeeccc
Q 011777 243 HIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKG 322 (477)
Q Consensus 243 ~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~ 322 (477)
+++. .++++|++..+++++|. ..+.+++++|.++|++||+++|+||+|+ | + ..+.++.+++.+.+.+++|+
T Consensus 130 ~i~~---~~~~~v~~~~~~~~~G~-~~~~~~l~~i~~~~~~~~~~li~D~~~~--g--~-~~~~~~~~~~d~~~~s~~K~ 200 (379)
T 3ke3_A 130 KIKE---DKSAIVYAPHVETSSGI-ILSEEYIKALSEAVHSVGGLLVIDCIAS--G--C-VWLDMKELGIDVLISAPQKG 200 (379)
T ss_dssp HHHH---HTCSEEEEESEETTTTE-ECCHHHHHHHHHHHHHTTCEEEEECTTC--T--T-CCCCHHHHTCSEEEECTTTT
T ss_pred HHhh---cCCcEEEEEeecCCCce-eCCHHHHHHHHHHHHHcCCEEEEEeccc--C--C-ccccccccCCCEEEecchhh
Confidence 8852 24667888777777784 5578899999999999999999999987 3 3 45556666776666677799
Q ss_pred ccCccceEEEEeCHHHHHhhcccc---c-------------------ccCCCCcHHHHHHHHHHHHhhchh---hHHHHH
Q 011777 323 IGNGLPLGAVVTTPEIANVMAQKI---Q-------------------FNTFGGNPVCSAGGLAVLRVIDKE---RRQAHC 377 (477)
Q Consensus 323 lg~G~pig~v~~~~~~~~~~~~~~---~-------------------~~t~~~~~~~~aaa~a~l~~l~~~---~~~~~~ 377 (477)
++++.++|++++++++++.+.... . ..+++.|+.++++..++|+.+.++ +..++.
T Consensus 201 l~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~ 280 (379)
T 3ke3_A 201 WSSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQ 280 (379)
T ss_dssp TCSCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cCCCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHH
Confidence 988778999999999988775311 0 012366788888888999887654 566777
Q ss_pred HHHHHHHHHHHHHHHHhCCCceeeec-cceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC-------CCCE
Q 011777 378 ADVGSHLLGRLRTLQERHDIIGDVRG-RGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL-------HGNV 449 (477)
Q Consensus 378 ~~~~~~l~~~L~~l~~~~~~~~~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------~~~~ 449 (477)
+++.+++++.|+++ .......... .+.+..+.. + .. . ....+.|.++||.+.++.. .+++
T Consensus 281 ~~l~~~l~~~l~~~--g~~~~~~~~~~~~~i~~~~~--~------~~-~-~~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~ 348 (379)
T 3ke3_A 281 WELGNRVRKVLTDK--GIESVAAEGFEAPGVVVSYT--E------RD-D-MHKGSAFAEAGLQIAAGVPLKVGEPDNFKT 348 (379)
T ss_dssp HHHHHHHHHHHHHT--TCCBSBCTTCBCSSEEEEEC--S------CH-H-HHSSHHHHHTTCCCEECCCCSSCCCTTCCE
T ss_pred HHHHHHHHHHHHHc--CCEecCCccccCceEEEEcc--C------Cc-c-hHHHHHHHHCCeEEeCCccccccccCcCCE
Confidence 78888888888775 2222221111 122222222 1 11 1 1236778899999987631 1579
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 450 FRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 450 iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
+||+++..+|++||++++++|++++++
T Consensus 349 lRis~~~~~t~~di~~~~~~l~~~l~~ 375 (379)
T 3ke3_A 349 FRLGLFGLDKLTDIDGTVERFEKALDE 375 (379)
T ss_dssp EEEECCSHHHHTCHHHHHHHHHHHHHH
T ss_pred EEEeCCcCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998865
No 127
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.95 E-value=2.1e-27 Score=239.59 Aligned_cols=340 Identities=14% Similarity=0.047 Sum_probs=216.3
Q ss_pred EEEeecCCcccccCCCCC--HHHHHHHHH-HHhhcc-c--cccccCChHHHHHHHHHHhhCC--CCCC--EEEEeCChHH
Q 011777 97 RYLDAFAGIVTVSCGHCH--PDVLNAIFE-QSKLLQ-H--ATTIYLHHAIADFAEALASKMP--GNLK--VVYFVNSGTE 166 (477)
Q Consensus 97 ~ylD~~~g~~~~~lGh~~--p~v~~Av~~-~l~~~~-~--~~~~~~~~~~~~l~~~La~~~~--~~~~--~v~~~~sGse 166 (477)
.++||..|.+..+.|+.+ |+|.+++.+ +++... + ....+..+.++++++.+..... .+.+ +|++|+||++
T Consensus 27 ~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~ 106 (397)
T 3fsl_A 27 DKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSG 106 (397)
T ss_dssp CCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHH
T ss_pred CeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcHH
Confidence 578998887655666665 899999998 876521 1 1111222334444444433221 0356 8999999999
Q ss_pred HHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhc
Q 011777 167 ANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF 246 (477)
Q Consensus 167 A~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~ 246 (477)
|++.++++.....+++.|++.+++|+++.......+. .+..++........+ | ++++++.++.
T Consensus 107 a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~-----------~~~~~~~~~~~~~~~--d----~~~l~~~l~~ 169 (397)
T 3fsl_A 107 ALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGF-----------EVSTYPWYDEATNGV--R----FNDLLATLKT 169 (397)
T ss_dssp HHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTTC-----------CEEEECCEETTTTEE--C----HHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcCC-----------ceEEEeeeeccCCcC--c----HHHHHHHHHh
Confidence 9999987655455778999999999987655443321 112222100001111 1 5788888864
Q ss_pred cCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCC-CCccc----cccCCCcceeeecc
Q 011777 247 GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS-HYWGF----ETQGVIPDIVTMAK 321 (477)
Q Consensus 247 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~-~~~~~----~~~gv~pDivt~sK 321 (477)
. ..++++++++..+|++|. .++.+.+++|.++|++||+++|+||+|++|.+.+. ....+ +..+....+.+|||
T Consensus 170 ~-~~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 247 (397)
T 3fsl_A 170 L-QAGSIVLLHPCCHNPTGA-DLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSK 247 (397)
T ss_dssp C-CTTCEEEECSSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTT
T ss_pred C-CCCCEEEEeCCCCCCCCc-CCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccc
Confidence 3 245677777777778884 56788899999999999999999999999876531 12222 12333344557999
Q ss_pred ccc-CccceEEEEe---CHHHHHhhccc----ccccCCCCcHHHHHHHHHHHHhh------c--hhhHHHHHHHHHHHHH
Q 011777 322 GIG-NGLPLGAVVT---TPEIANVMAQK----IQFNTFGGNPVCSAGGLAVLRVI------D--KERRQAHCADVGSHLL 385 (477)
Q Consensus 322 ~lg-~G~pig~v~~---~~~~~~~~~~~----~~~~t~~~~~~~~aaa~a~l~~l------~--~~~~~~~~~~~~~~l~ 385 (477)
.++ .|+|+||+++ ++++++.+... ....+.+.+.++++++.++++.. . .++..++++++.+++.
T Consensus 248 ~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 327 (397)
T 3fsl_A 248 IFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELV 327 (397)
T ss_dssp TTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 6999999975 45655433221 12234455777777777766531 1 1345566666777777
Q ss_pred HHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHH
Q 011777 386 GRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADF 465 (477)
Q Consensus 386 ~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~ 465 (477)
+.|+++....+.....+..|+++++.+. ...+.+.|.++||.+.+++ ||+++ .+++++|++
T Consensus 328 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~gi~v~~g~------Ris~~-~~~~~~i~~ 388 (397)
T 3fsl_A 328 KVLSTEMPERNFDYLLNQRGMFSYTGLS------------AAQVDRLREEFGVYLIASG------RMCVA-GLNTANVQR 388 (397)
T ss_dssp HHHHHHCTTSCCTHHHHCCSSEEECCCC------------HHHHHHHHHTTCEECCTTC------EEEGG-GCCTTTHHH
T ss_pred HHHHhcCCCCCceeecCCceEEEecCCC------------HHHHHHHHHhCCEEECCCC------eEEEE-ecCHhhHHH
Confidence 7776652111222222334666665441 2346677888999999864 88774 447788999
Q ss_pred HHHHHHHHH
Q 011777 466 LVDALDYSM 474 (477)
Q Consensus 466 ~l~~l~~~l 474 (477)
++++|++++
T Consensus 389 ~~~~l~~~l 397 (397)
T 3fsl_A 389 VAKAFAAVM 397 (397)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhhC
Confidence 999998764
No 128
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.95 E-value=3.9e-27 Score=235.77 Aligned_cols=320 Identities=13% Similarity=0.074 Sum_probs=209.7
Q ss_pred CCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCC--CEEEEeCChHHHHHHHHHHHHhccCCceEEEEccC
Q 011777 113 CHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNL--KVVYFVNSGTEANELAMLMARLSTGNLGMIALRNA 190 (477)
Q Consensus 113 ~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~--~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~ 190 (477)
.+|+|++++.+++.. +... ...+...+++++++++++.+. +.+++++||++|++.+++.+. .++++||+.+++
T Consensus 30 ~~~~v~~a~~~~~~~--~~~~-~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~--~~gd~vi~~~~~ 104 (376)
T 3f0h_A 30 SSEEVRAIGAEQVPY--FRTT-EFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCF--TKKDKVLVIDGG 104 (376)
T ss_dssp CCHHHHHHHTSCCCC--CSSH-HHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHC--CTTCCEEEEESS
T ss_pred CcHHHHHHhcCCCCC--CCCH-HHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhcc--CCCCeEEEEeCC
Confidence 478899988775532 2211 123556788999999876543 456669999999999998774 367889999998
Q ss_pred ccCCccccccc-ccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeC
Q 011777 191 YHGGSSGTIGL-TALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVEL 269 (477)
Q Consensus 191 yhG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~ 269 (477)
||+........ .+. .+..++.+. ...++ +++++++++ .++++|+++++++++|.+.+
T Consensus 105 ~~~~~~~~~~~~~g~----------~~~~v~~~~--~~~~d------~~~l~~~~~----~~~~~v~~~~~~nptG~~~~ 162 (376)
T 3f0h_A 105 SFGHRFVQLCEIHEI----------PYVALKLEH--GKKLT------KEKLYEYDN----QNFTGLLVNVDETSTAVLYD 162 (376)
T ss_dssp HHHHHHHHHHHHTTC----------CEEEEECCT--TCCCC------HHHHHTTTT----SCCCEEEEESEETTTTEECC
T ss_pred hhhHHHHHHHHHcCC----------ceEEEeCCC--CCCCC------HHHHHHhhc----cCceEEEEecccCCcceecC
Confidence 98854221111 110 122222221 11122 467776553 46788999988889998776
Q ss_pred CchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhccccc--
Q 011777 270 APGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQ-- 347 (477)
Q Consensus 270 ~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~-- 347 (477)
+++|.++|++||+++|+||+|+++++ .+.++.+++...+.+++|+++++.++|++++++++++.+.....
T Consensus 163 ----l~~i~~l~~~~~~~li~D~~~~~~~~----~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~ 234 (376)
T 3f0h_A 163 ----TMMIGEFCKKNNMFFVCDCVSAFLAD----PFNMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRT 234 (376)
T ss_dssp ----HHHHHHHHHHTTCEEEEECTTTTTTS----CCCHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCC
T ss_pred ----HHHHHHHHHHcCCEEEEEcCccccCc----cccccccCccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCc
Confidence 99999999999999999999986543 23345556655566778999977778999999999887764211
Q ss_pred ---------------ccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceee-eccceeEEEE
Q 011777 348 ---------------FNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDV-RGRGLMVGME 411 (477)
Q Consensus 348 ---------------~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v-~g~g~~~~i~ 411 (477)
...++.+..+++++.++++.+.+++..+++.+....+++.+.+...+.+..... ...+.++.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~ 314 (376)
T 3f0h_A 235 MYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLPFELVSESPANGVTSVH 314 (376)
T ss_dssp STTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSSEEECCSSBBTTEEEEE
T ss_pred eeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCccCccccCceEEEEe
Confidence 123344555667777888876554333444444444444444443333321111 1122232222
Q ss_pred EeeCCCCCCccHHHHHHHHHHHHHc-CceeeccC--CCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 412 LVTDRKEKTPAKAETAVLFEKLREL-GVLVGKGG--LHGNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~--~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
. +. ....++.+.|+++ ||.+.++. ..++++||+++..+|++|+++++++|++++++
T Consensus 315 ~--~~-------~~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~ 373 (376)
T 3f0h_A 315 P--TT-------ANAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR 373 (376)
T ss_dssp E--SS-------SCHHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred C--CC-------CCHHHHHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 2 10 1245788889988 99998763 23578999999999999999999999998864
No 129
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.95 E-value=3.8e-27 Score=236.19 Aligned_cols=317 Identities=19% Similarity=0.160 Sum_probs=219.8
Q ss_pred CCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCC--CEEEEeCChHHHHHHHHHHHHhccCCceEEEEccC
Q 011777 113 CHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNL--KVVYFVNSGTEANELAMLMARLSTGNLGMIALRNA 190 (477)
Q Consensus 113 ~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~--~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~ 190 (477)
.+|+|++++.+++.. + ......+...+++++++++++.+. ++++|++||++|++ +++.+ ..++++|++.+++
T Consensus 13 ~~~~v~~a~~~~~~~--~-~~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~--~~~gd~vi~~~~~ 86 (384)
T 3zrp_A 13 IKEDVLVAGLENNVG--F-TSKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSL--LKPNDKILVVSNG 86 (384)
T ss_dssp CCHHHHHHTTCCSCC--T-TSHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGG--CCTTCEEEEECSS
T ss_pred CCHHHHHHhhccccc--c-ccHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhh--cCCCCEEEEecCC
Confidence 578999988776532 1 111224567889999999987766 78999999999999 88754 3567889999999
Q ss_pred ccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCC
Q 011777 191 YHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELA 270 (477)
Q Consensus 191 yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~ 270 (477)
||+.....+... .|...+.++......++ ++++++.++. .++++|+++++++++|.+.+
T Consensus 87 ~~~~~~~~~~~~-----------~g~~~~~v~~~~~~~~d------~~~l~~~i~~---~~~~~v~~~~~~nptG~~~~- 145 (384)
T 3zrp_A 87 VFGDRWEQIFKR-----------YPVNVKVLRPSPGDYVK------PGEVEEEVRK---SEYKLVALTHVETSTGVREP- 145 (384)
T ss_dssp HHHHHHHHHHTT-----------SSCEEEEECCSTTCCCC------HHHHHHHHHH---SCEEEEEEESEETTTTEECC-
T ss_pred cchHHHHHHHHH-----------cCCcEEEecCCCCCCCC------HHHHHHHHHh---CCCcEEEEeCCCCCCceECc-
Confidence 998532221110 12222222222221222 5888888872 35889999999999998776
Q ss_pred chhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceee--ecccccCccceEEEEeCHHHHHhh-cc---
Q 011777 271 PGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGNGLPLGAVVTTPEIANVM-AQ--- 344 (477)
Q Consensus 271 ~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~pig~v~~~~~~~~~~-~~--- 344 (477)
+++|.++|++||+++|+||+|+ ++. ..+..+.+ .+|+++ ++|+++++.++|++++++++++.+ ..
T Consensus 146 ---l~~i~~l~~~~~~~li~D~a~~-~~~---~~~~~~~~--~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~ 216 (384)
T 3zrp_A 146 ---VKDVINKIRKYVELIVVDGVSS-VGA---EEVKAEEW--NVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSI 216 (384)
T ss_dssp ---HHHHHHHHGGGEEEEEEECTTT-TTT---SCCCTTTT--TCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCS
T ss_pred ---HHHHHHHHHhcCCEEEEECccc-ccC---cccccccc--CCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCC
Confidence 9999999999999999999987 322 11222222 356665 559998878899999999988776 11
Q ss_pred ---------cc---------cccCC-CCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCCCceee-
Q 011777 345 ---------KI---------QFNTF-GGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERHDIIGDV- 401 (477)
Q Consensus 345 ---------~~---------~~~t~-~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v- 401 (477)
.. ....+ +.|...+++..++++.+.+ +++.++++++.+++.+.|+++ ........
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~ 294 (384)
T 3zrp_A 217 AGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL--GLEIVARRP 294 (384)
T ss_dssp CCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCBSCSSG
T ss_pred CcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC--CCeEccCcc
Confidence 00 22223 4567777777788877654 356777888888888888775 23222211
Q ss_pred -eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC-CCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 402 -RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL-HGNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 402 -~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
...+.++++.+.. ....++.+.|.++||.+.++.. ..+++||+++..++++|+++++++|++++++
T Consensus 295 ~~~~~~~~~~~~~~---------~~~~~~~~~l~~~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~ 362 (384)
T 3zrp_A 295 ESYSNTVTGVILKV---------ADPQKVLAGTVNEGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAISVIERTLRK 362 (384)
T ss_dssp GGBCSSEEEEECSS---------SCHHHHHHHHHTTTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred cccCccEEEEECCC---------CCHHHHHHHHHHCCEEEecCCCCCcCEEEEeccccCCHHHHHHHHHHHHHHHHH
Confidence 1235666666532 1246788999999999987641 1278999999999999999999999998864
No 130
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.95 E-value=1e-26 Score=235.49 Aligned_cols=319 Identities=14% Similarity=0.133 Sum_probs=218.6
Q ss_pred CCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCE-EEEeCChHHHHHHHHHHHHhccCCceEEEEccCc
Q 011777 113 CHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKV-VYFVNSGTEANELAMLMARLSTGNLGMIALRNAY 191 (477)
Q Consensus 113 ~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~-v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~y 191 (477)
.+|+|.+++.+++. .+... ...+...+++++++++++.+.+. +++++||++|++.+++.+ ..++++|++.+++|
T Consensus 24 ~~~~v~~a~~~~~~--~~~~~-~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~--~~~gd~Vl~~~~~~ 98 (411)
T 3nnk_A 24 ADPRVLRAMSSQLI--GQYDP-AMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSA--IRPGDKVLVPVFGR 98 (411)
T ss_dssp CCHHHHHHHTSCCC--CTTCH-HHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHH--CCTTCEEEEEECSH
T ss_pred CCHHHHHHhhcccc--ccccH-HHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHh--cCCCCEEEEecCCc
Confidence 57889988876531 12111 12355688999999988765554 889999999999999977 34778999999999
Q ss_pred cCCc--ccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeC
Q 011777 192 HGGS--SGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVEL 269 (477)
Q Consensus 192 hG~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~ 269 (477)
|+.. ...... |...+.+|......++ +++++++++. .++++|+++++++++|.+.+
T Consensus 99 ~~~~~~~~~~~~-------------g~~~~~v~~~~~~~~d------~~~l~~~i~~---~~~~~v~~~~~~nptG~~~~ 156 (411)
T 3nnk_A 99 FGHLLCEIARRC-------------RAEVHTIEVPWGEVFT------PDQVEDAVKR---IRPRLLLTVQGDTSTTMLQP 156 (411)
T ss_dssp HHHHHHHHHHHT-------------TCEEEEEECCTTCCCC------HHHHHHHHHH---HCCSEEEEESEETTTTEECC
T ss_pred hHHHHHHHHHHc-------------CCeEEEEecCCCCCCC------HHHHHHHHhh---CCCeEEEEeCCCCCcceecc
Confidence 9842 211111 2222222221111222 5888888862 26788999998999998776
Q ss_pred CchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccc---
Q 011777 270 APGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKI--- 346 (477)
Q Consensus 270 ~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~--- 346 (477)
+++|.++|++||+++|+||+|+ ++. ..+..+.+++...+.+++|+++++.++|++++++++++.+....
T Consensus 157 ----l~~i~~l~~~~~~~li~Dea~~-~~~---~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~ 228 (411)
T 3nnk_A 157 ----LAELGEICRRYDALFYTDATAS-LGG---NPLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVE 228 (411)
T ss_dssp ----CTTHHHHHHHHTCEEEEECTTT-BTT---BCCCTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCC
T ss_pred ----HHHHHHHHHHcCCEEEEECCcc-cCC---cccchhccCCcEEEecCccccCCCCceEEEEECHHHHHHHhhccccc
Confidence 8899999999999999999986 322 22333444443344456799888788999999999988775432
Q ss_pred ---------------------------------cccCCCCcHHHHHHHHHHHHhhchh---hHHHHHHHHHHHHHHHHHH
Q 011777 347 ---------------------------------QFNTFGGNPVCSAGGLAVLRVIDKE---RRQAHCADVGSHLLGRLRT 390 (477)
Q Consensus 347 ---------------------------------~~~t~~~~~~~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~L~~ 390 (477)
....++.|..+++++.++++.+.++ +..++++++.+++.+.|++
T Consensus 229 ~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~ 308 (411)
T 3nnk_A 229 EGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQA 308 (411)
T ss_dssp GGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 0122345788888888888876553 5677788888888888877
Q ss_pred HHHhCCCcee-eeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHc-CceeeccC--CCCCEEEEeC-CCCCcHHHHHH
Q 011777 391 LQERHDIIGD-VRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLREL-GVLVGKGG--LHGNVFRIKP-PMCFTKDDADF 465 (477)
Q Consensus 391 l~~~~~~~~~-v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~--~~~~~iRi~p-~~~~t~e~i~~ 465 (477)
+ ....... ....+.++++.+... ....++.+.|+++ ||.+.++. ..++++||++ +...+++|+++
T Consensus 309 ~--g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~ 378 (411)
T 3nnk_A 309 M--GLETFGDLKHKMNNVLGVVIPQG--------INGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMT 378 (411)
T ss_dssp T--TCCBCSCGGGBCSSEEEEECCTT--------CCHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHH
T ss_pred c--CCEeCCCcccccccEEEEECCCC--------CCHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHH
Confidence 5 2222211 112356666665211 1245788888876 99998762 2357999998 77889999999
Q ss_pred HHHHHHHHHhh
Q 011777 466 LVDALDYSMSK 476 (477)
Q Consensus 466 ~l~~l~~~l~~ 476 (477)
++++|++++++
T Consensus 379 ~~~~l~~~l~~ 389 (411)
T 3nnk_A 379 TLSALEAVLNY 389 (411)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999864
No 131
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.95 E-value=6.6e-26 Score=229.35 Aligned_cols=327 Identities=15% Similarity=0.094 Sum_probs=220.0
Q ss_pred CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc-cccccc-----CChHHHHHHHHHHhhCCCCCCEEEEeCChHHH
Q 011777 94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ-HATTIY-----LHHAIADFAEALASKMPGNLKVVYFVNSGTEA 167 (477)
Q Consensus 94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~-~~~~~~-----~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA 167 (477)
++..|||+.++. +.+|+|.+++.+++.... +....| ..+...+++++++++++.+.+.|+|++||+++
T Consensus 25 ~~~~~ld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 98 (406)
T 3cai_A 25 DGWVHFDAPAGM------LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVL 98 (406)
T ss_dssp SSCEECBGGGCC------CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHH
T ss_pred CCeEEEeCCCcC------CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHH
Confidence 357899976643 478999999999987632 111112 24567889999999987766789999999999
Q ss_pred HHHHHHHHH-hccCCceEEEEccCccCCccccccc---ccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHH
Q 011777 168 NELAMLMAR-LSTGNLGMIALRNAYHGGSSGTIGL---TALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDH 243 (477)
Q Consensus 168 ~~~Al~~ar-~~~~~~~ii~~~~~yhG~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~ 243 (477)
++.+++... ...+++.|++..++|++........ .+. .+..++.. +.....+ +++|++.
T Consensus 99 l~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~----------~v~~v~~~-~~~~~~d------~~~l~~~ 161 (406)
T 3cai_A 99 LSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGA----------KVKWAEVD-IETGELP------TWQWESL 161 (406)
T ss_dssp HHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBC----------EEEEECCC-TTTCCCC------GGGHHHH
T ss_pred HHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCC----------eEEEEecC-cccCCcC------HHHHHHH
Confidence 999988542 2346678999999998765433321 111 11222211 0111111 4677777
Q ss_pred HhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCccee--eecc
Q 011777 244 IDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAK 321 (477)
Q Consensus 244 i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK 321 (477)
++ +++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ +|.. .+....++ +|++ +++|
T Consensus 162 l~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~---~~~~~~~~--~d~~~~s~~K 227 (406)
T 3cai_A 162 IS----KSTRLVAVNSASGTLGGVTD----LRAMTKLVHDVGALVVVDHSAA-APYR---LLDIRETD--ADVVTVNAHA 227 (406)
T ss_dssp CC----TTEEEEEEESBCTTTCBBCC----CHHHHHHHHHTTCEEEEECTTT-TTTC---CCCHHHHC--CSEEEEEGGG
T ss_pred hC----CCceEEEEeCCcCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCC---CCCchhcC--CCEEEeehhh
Confidence 75 46889999999999998776 8999999999999999999997 3321 22333334 5665 5679
Q ss_pred cccCccceE-EEEeCHHHHHhhccccc---------ccCCCCcHHHHHHHHHHHHhhch-----------------hhHH
Q 011777 322 GIGNGLPLG-AVVTTPEIANVMAQKIQ---------FNTFGGNPVCSAGGLAVLRVIDK-----------------ERRQ 374 (477)
Q Consensus 322 ~lg~G~pig-~v~~~~~~~~~~~~~~~---------~~t~~~~~~~~aaa~a~l~~l~~-----------------~~~~ 374 (477)
.+|++ +| ++++++++++.+....+ ....+.|+.+++++.++++.+.+ ++..
T Consensus 228 ~~g~~--~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~ 305 (406)
T 3cai_A 228 WGGPP--IGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSAD 305 (406)
T ss_dssp GTSCS--CEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHH
T ss_pred hcCCC--cCeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHH
Confidence 77643 89 99999999887765432 11334577887777788877653 2344
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCceeee---ccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC-------
Q 011777 375 AHCADVGSHLLGRLRTLQERHDIIGDVR---GRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG------- 444 (477)
Q Consensus 375 ~~~~~~~~~l~~~L~~l~~~~~~~~~v~---g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~------- 444 (477)
++.+++.+++.+.|++ .+.+.... ..+.++++.+.. ....++.+.|.++||.+.++.
T Consensus 306 ~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~L~~~gi~v~~g~~~~~~~~ 372 (406)
T 3cai_A 306 AYLNRVFDYLMVSLRS----LPLVMLIGRPEAQIPVVSFAVHK---------VPADRVVQRLADNGILAIANTGSRVLDV 372 (406)
T ss_dssp HHHHHHHHHHHHHHHT----CTTEEECCCCSSBCSEEEEEETT---------BCHHHHHHHHHHTTEECEECCSCHHHHH
T ss_pred HHHHHHHHHHHHHHhc----CCCeEEcCCccccCCEEEEEECC---------cCHHHHHHHHHHCCcEEecCChHHHHHH
Confidence 5555555666555544 32221111 134466776521 014568888889999998763
Q ss_pred ----CCCCEEEEeCCCCCcHHHHHHHHHHHHH
Q 011777 445 ----LHGNVFRIKPPMCFTKDDADFLVDALDY 472 (477)
Q Consensus 445 ----~~~~~iRi~p~~~~t~e~i~~~l~~l~~ 472 (477)
...+++||+++..++++|+++++++|++
T Consensus 373 ~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 373 LGVNDVGGAVTVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp HTTTTTTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred cCCCCCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 1247899999999999999999999875
No 132
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.95 E-value=2.1e-26 Score=231.81 Aligned_cols=331 Identities=14% Similarity=0.046 Sum_probs=225.0
Q ss_pred CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHH
Q 011777 95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLM 174 (477)
Q Consensus 95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ 174 (477)
...|||..+. ++.+|+|++++.+++.. +. .....+...+++++++++++.+.+++++|+||++|++.+++.
T Consensus 8 ~~~yl~~~~~------~~~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~ 78 (392)
T 2z9v_A 8 DPVITLTAGP------VNAYPEVLRGLGRTVLY--DY-DPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAAS 78 (392)
T ss_dssp CCSEECSSSC------CCCCHHHHHHTTSCCCC--TT-SHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHH
T ss_pred CcceeecCCC------cCCCHHHHHHHhccccc--cc-cHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHH
Confidence 3468886532 36789999998876643 11 111234567899999999987667899999999999999997
Q ss_pred HHhccCCceEEEEccCccCCccccc-ccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCee
Q 011777 175 ARLSTGNLGMIALRNAYHGGSSGTI-GLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVA 253 (477)
Q Consensus 175 ar~~~~~~~ii~~~~~yhG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a 253 (477)
+ ..+++.|++.+++||+.....+ ...+. .+..++... ....+ ++++++.++. .++++
T Consensus 79 ~--~~~gd~Vl~~~~~~~~~~~~~~~~~~g~----------~~~~v~~~~--~~~~d------~~~l~~~l~~--~~~~~ 136 (392)
T 2z9v_A 79 L--ISPDDVVLNLASGVYGKGFGYWAKRYSP----------HLLEIEVPY--NEAID------PQAVADMLKA--HPEIT 136 (392)
T ss_dssp H--CCTTCCEEEEESSHHHHHHHHHHHHHCS----------CEEEEECCT--TSCCC------HHHHHHHHHH--CTTCC
T ss_pred h--cCCCCEEEEecCCcccHHHHHHHHHcCC----------ceEEeeCCC--CCCCC------HHHHHHHHhc--CCCCc
Confidence 6 3466789999999998631111 10111 122222211 11122 5788888853 13577
Q ss_pred EEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceee--ecccccCccceEE
Q 011777 254 GFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGNGLPLGA 331 (477)
Q Consensus 254 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~pig~ 331 (477)
+|+++++++++|.+.+ +++|.++|++||+++|+||+|+ +|.. .+....+ .+|+++ ++|+++++.++|+
T Consensus 137 ~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~---~~~~~~~--~~d~~~~s~sK~~~~~~g~G~ 206 (392)
T 2z9v_A 137 VVSVCHHDTPSGTINP----IDAIGALVSAHGAYLIVDAVSS-FGGM---KTHPEDC--KADIYVTGPNKCLGAPPGLTM 206 (392)
T ss_dssp EEEEESEEGGGTEECC----HHHHHHHHHHTTCEEEEECTTT-BTTB---SCCGGGG--TCSEEEECSSSTTCCCSCCEE
T ss_pred EEEEeccCCCCceecc----HHHHHHHHHHcCCeEEEEcccc-cCCc---ccccccc--cceEEEecCcccccCCCceeE
Confidence 8889998888897776 8999999999999999999997 4322 2222323 356665 5799887667799
Q ss_pred EEeCHHHHHhhcccc--------------------cccCCCCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHH
Q 011777 332 VVTTPEIANVMAQKI--------------------QFNTFGGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRL 388 (477)
Q Consensus 332 v~~~~~~~~~~~~~~--------------------~~~t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L 388 (477)
+++++++++.+.... .....+.|+.+++++.++++.+.+ ++..++++++.+++++.|
T Consensus 207 l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L 286 (392)
T 2z9v_A 207 MGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGV 286 (392)
T ss_dssp EEECHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred EEECHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 999999887764310 112334577777777788877654 346777888888888888
Q ss_pred HHHHHhCCCce-ee-eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHc-CceeeccC--CCCCEEEEeCCC-CCcHHH
Q 011777 389 RTLQERHDIIG-DV-RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLREL-GVLVGKGG--LHGNVFRIKPPM-CFTKDD 462 (477)
Q Consensus 389 ~~l~~~~~~~~-~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~--~~~~~iRi~p~~-~~t~e~ 462 (477)
+++ ...... .. ...+.++++.+... ....++.+.|.++ ||.+.++. ...+++||++.. .++++|
T Consensus 287 ~~~--g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~ 356 (392)
T 2z9v_A 287 TAM--GLSVWAASDSIASPTTTAVRTPDG--------VDEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIY 356 (392)
T ss_dssp HHT--TCCBSSSSGGGBCTTEEEEECCTT--------CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHH
T ss_pred HHc--CCeeccCCccccCCceEEEECCCC--------CCHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHH
Confidence 775 232221 10 11456667765211 1245688889887 99998864 235799998643 789999
Q ss_pred HHHHHHHHHHHHhh
Q 011777 463 ADFLVDALDYSMSK 476 (477)
Q Consensus 463 i~~~l~~l~~~l~~ 476 (477)
+++++++|++++++
T Consensus 357 i~~~~~~l~~~~~~ 370 (392)
T 2z9v_A 357 AIAALTALGGAMNA 370 (392)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998865
No 133
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.95 E-value=1.4e-26 Score=229.90 Aligned_cols=329 Identities=12% Similarity=0.039 Sum_probs=215.2
Q ss_pred EEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHh
Q 011777 98 YLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARL 177 (477)
Q Consensus 98 ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~ 177 (477)
+++|.++. .|+.+|+|.+++.+++.. +....+..+...+++++++++++.+.++++|++||++|++.+++.++.
T Consensus 15 ~i~l~~~~----~~~~~~~v~~a~~~~~~~--~~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~~ 88 (359)
T 1svv_A 15 PYSFVNDY----SVGMHPKILDLMARDNMT--QHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALR 88 (359)
T ss_dssp CEECSCSC----SSCCCHHHHHHHHHHTTC--CCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCC
T ss_pred eEEecCCC----cCCCCHHHHHHHHHHHhh--ccccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHhC
Confidence 56665533 468899999999998864 333345678899999999999877778999999999999999998754
Q ss_pred ccCCceEEEEccCccCCccc-ccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc---CCCCee
Q 011777 178 STGNLGMIALRNAYHGGSSG-TIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG---TSGKVA 253 (477)
Q Consensus 178 ~~~~~~ii~~~~~yhG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~---~~~~~a 253 (477)
+++.|++.+++||+.... ..... |...+.+|.. ...+ | +++|++.++.. +..+++
T Consensus 89 --~gd~vl~~~~~~~~~~~~~~~~~~------------g~~~~~v~~~-~~~~--d----~~~l~~~l~~~~~~~~~~~~ 147 (359)
T 1svv_A 89 --PWEAVIATQLGHISTHETGAIEAT------------GHKVVTAPCP-DGKL--R----VADIESALHENRSEHMVIPK 147 (359)
T ss_dssp --TTEEEEEETTSHHHHSSTTHHHHT------------TCCEEEECCT-TSCC--C----HHHHHHHHHHSCSTTSCEEE
T ss_pred --CCCEEEEcccchHHHHHHHHHhcC------------CCeeEEEeCC-CCee--c----HHHHHHHHHHHHhccCCCce
Confidence 567899999999987653 11111 2222222221 1112 2 57888888632 122478
Q ss_pred EEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCc--cCCCCCCccccccC--CCcceeee--cccccCcc
Q 011777 254 GFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGF--GRTGSHYWGFETQG--VIPDIVTM--AKGIGNGL 327 (477)
Q Consensus 254 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gf--gr~G~~~~~~~~~g--v~pDivt~--sK~lg~G~ 327 (477)
+|+++++ +++|.+ .+++++++|.++|++||+++|+||+|.+| +..+ . .....+ ..+|++++ +|. ++..
T Consensus 148 ~v~~~~~-~ptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~-~--~~~~~~~~~~~d~~~~s~~K~-g~~~ 221 (359)
T 1svv_A 148 LVYISNT-TEVGTQ-YTKQELEDISASCKEHGLYLFLDGARLASALSSPV-N--DLTLADIARLTDMFYIGATKA-GGMF 221 (359)
T ss_dssp EEEEESS-CTTSCC-CCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTT-C--CCCHHHHHHHCSEEEEECTTT-TCSS
T ss_pred EEEEEcC-CCCcee-cCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCC-c--chhhhhhhhcCCEEEEecccC-CCCC
Confidence 8888887 467754 46799999999999999999999999766 4444 1 111111 24677654 574 3345
Q ss_pred ceEEEEeCHHHHHhhcccc--cccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccc
Q 011777 328 PLGAVVTTPEIANVMAQKI--QFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRG 405 (477)
Q Consensus 328 pig~v~~~~~~~~~~~~~~--~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g 405 (477)
++|++++++++++.+.... .+.+++.+....++..+.++...-++..++++++++++.+.| +.. ...... ...+
T Consensus 222 ~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~~-~~~~~~--~~~~ 297 (359)
T 1svv_A 222 GEALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGL-EAC-GIRLAW--PSAS 297 (359)
T ss_dssp CEEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHH-HHT-TCCBSS--CCSS
T ss_pred ceEEEEEcccHHHHHHHHHhcCCcccccchhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh-ccC-CeEEcc--CCcc
Confidence 7799999998877665431 233333233333333333332111346677777888888877 431 222211 2234
Q ss_pred eeEEEEEeeCCCCCCccHHHHHHHHHHHHHc-Cceeecc-CCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 406 LMVGMELVTDRKEKTPAKAETAVLFEKLREL-GVLVGKG-GLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 406 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~-~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
.++++.+. .++.+.|+++ ||++.+. ....+++||++++.++++|+++++++|++++++
T Consensus 298 ~~~~~~~~-------------~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 357 (359)
T 1svv_A 298 NQLFPILE-------------NTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAS 357 (359)
T ss_dssp SEECBEEE-------------HHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC---
T ss_pred ceEEEEcC-------------HHHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhc
Confidence 55555541 2678889888 9998432 112468999999999999999999999988765
No 134
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.95 E-value=2.8e-27 Score=240.17 Aligned_cols=343 Identities=11% Similarity=0.029 Sum_probs=216.2
Q ss_pred CCCEEEeecCCcccccCCC--CCHHHHHHHHH-HHhhcccccccc-CChHHHHHHHHHHhhCCC------CCCEEEE--e
Q 011777 94 NGRRYLDAFAGIVTVSCGH--CHPDVLNAIFE-QSKLLQHATTIY-LHHAIADFAEALASKMPG------NLKVVYF--V 161 (477)
Q Consensus 94 dG~~ylD~~~g~~~~~lGh--~~p~v~~Av~~-~l~~~~~~~~~~-~~~~~~~l~~~La~~~~~------~~~~v~~--~ 161 (477)
+|+.++||..|.+..+-|+ .+|.|.+++.+ +++... ...| ......++++.+++++.. +.++|++ |
T Consensus 27 ~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~--~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t 104 (412)
T 1yaa_A 27 QRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSY--NHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQS 104 (412)
T ss_dssp CCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTC--CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred CCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCccc--ccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEec
Confidence 3566889888876444443 56899999988 775311 1112 222244555555555421 3468999 9
Q ss_pred CChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHH
Q 011777 162 NSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQ 241 (477)
Q Consensus 162 ~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le 241 (477)
+||++|++.++++++...+++.|++.+++|+++.......+. .+..++..+.. .+..| +++++
T Consensus 105 ~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~-----------~~~~v~~~~~~--~~~~d----~~~l~ 167 (412)
T 1yaa_A 105 LSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGL-----------KTATYPYWANE--TKSLD----LNGFL 167 (412)
T ss_dssp EHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTC-----------CEEEEECEETT--TTEEC----HHHHH
T ss_pred cchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHcCc-----------eEEEEeeecCC--CCccC----HHHHH
Confidence 999999999987666555778899999999997654433221 11222210000 11112 57888
Q ss_pred HHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCC--CCCccc-cccCCCc----
Q 011777 242 DHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTG--SHYWGF-ETQGVIP---- 314 (477)
Q Consensus 242 ~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G--~~~~~~-~~~gv~p---- 314 (477)
+.++.. +...+++++...++++| ..++.+.+++|.++|++||+++|+||+|.+|++.+ .....+ +..+..+
T Consensus 168 ~~l~~~-~~~~~~~~~~~p~nPtG-~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (412)
T 1yaa_A 168 NAIQKA-PEGSIFVLHSCAHNPTG-LDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSP 245 (412)
T ss_dssp HHHHHS-CTTCEEEEECSSCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCC
T ss_pred HHHHhC-CCCCEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcc
Confidence 888632 12345555455566666 45688899999999999999999999999987654 012222 1111122
Q ss_pred --ceeeecccccC-ccceEEEE--e-----CHH----HHHhhcccccccCCCCcHHHHHHHHHHHHhhc--------hhh
Q 011777 315 --DIVTMAKGIGN-GLPLGAVV--T-----TPE----IANVMAQKIQFNTFGGNPVCSAGGLAVLRVID--------KER 372 (477)
Q Consensus 315 --Divt~sK~lg~-G~pig~v~--~-----~~~----~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~--------~~~ 372 (477)
.+.++||.++. |+|+||++ + +++ +++.+.......+.+.|+++++++.++|+... .++
T Consensus 246 ~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 325 (412)
T 1yaa_A 246 VFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVT 325 (412)
T ss_dssp EEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred eEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 24478999997 99999998 7 566 77766553333444568999999999887652 134
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEE
Q 011777 373 RQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRI 452 (477)
Q Consensus 373 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi 452 (477)
..++++++.+++.+.|+++....+........|.++++.+ + ...+.+.+.++||++.+ ++||
T Consensus 326 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~--------~----~~~~~~~l~~~gi~v~~------~~Ri 387 (412)
T 1yaa_A 326 MSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGL--------T----PQMVKRLEETHAVYLVA------SGRA 387 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCC--------C----HHHHHHHHHHHCEECCT------TSEE
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCC--------C----HHHHHHHHHhCCEEecc------CcEE
Confidence 4556666666666666654210001111222344544322 1 23455555678999976 3699
Q ss_pred eCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 453 KPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 453 ~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
+++. ++++++++++++|+++++.
T Consensus 388 s~~~-~~~~~i~~~~~~l~~~~~~ 410 (412)
T 1yaa_A 388 SIAG-LNQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp EGGG-CCTTTHHHHHHHHHHHHHH
T ss_pred EEcc-CCHhHHHHHHHHHHHHHHh
Confidence 8774 5899999999999998864
No 135
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.95 E-value=1e-26 Score=229.45 Aligned_cols=309 Identities=16% Similarity=0.124 Sum_probs=208.2
Q ss_pred CEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCC---CCCCEEEEeCChHHHHHHHH
Q 011777 96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMP---GNLKVVYFVNSGTEANELAM 172 (477)
Q Consensus 96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~---~~~~~v~~~~sGseA~~~Al 172 (477)
.+++||.++.. +++ .+|++.+++.+++.+. ....|......++++.|+++++ .+.++|++++||++|++.++
T Consensus 19 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~--~~~~y~~~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~ 93 (335)
T 1uu1_A 19 RDKTYLALNEN--PFP-FPEDLVDEVFRRLNSD--ALRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMM 93 (335)
T ss_dssp CCSEEESSCCC--SSC-CCHHHHHHHHHTCCGG--GGGSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHH
T ss_pred CcceECCCCCC--CCC-CCHHHHHHHHHHhhhh--hhhcCCCCchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHH
Confidence 46889887764 455 6899999999887321 1122333346778888888876 56678999999999999999
Q ss_pred HHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCe
Q 011777 173 LMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKV 252 (477)
Q Consensus 173 ~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~ 252 (477)
+.+ ++.|++. ++||++.......+ ...+.+|... .+..| ++++ +++
T Consensus 94 ~~~-----gd~Vl~~-p~y~~~~~~~~~~g-------------~~~~~v~~~~--~~~~d----~~~l---------~~~ 139 (335)
T 1uu1_A 94 LMF-----DRSVFFP-PTYSCYRIFAKAVG-------------AKFLEVPLTK--DLRIP----EVNV---------GEG 139 (335)
T ss_dssp HHS-----SEEEECS-SSCHHHHHHHHHHT-------------CEEEECCCCT--TSCCC----CCCC---------CTT
T ss_pred HHh-----CCcEEEC-CCcHHHHHHHHHcC-------------CeEEEeccCC--CCCCC----HHHc---------CCC
Confidence 865 4778888 99999765443322 1122222110 11111 1222 245
Q ss_pred eEEE-ecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcc-ccccCCCcceeeeccccc-Cccce
Q 011777 253 AGFI-AETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWG-FETQGVIPDIVTMAKGIG-NGLPL 329 (477)
Q Consensus 253 a~vi-~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~-~~~~gv~pDivt~sK~lg-~G~pi 329 (477)
++|+ ++| ++++|.+. +.+.+++|.++| | ++|+||+|++|+.. .+.. .+..+....+.++||.+| +|+|+
T Consensus 140 ~~v~l~~p-~nptG~~~-~~~~l~~l~~~~---~-~li~De~~~~~~~~--~~~~~~~~~~~~i~~~s~sK~~g~~G~r~ 211 (335)
T 1uu1_A 140 DVVFIPNP-NNPTGHVF-EREEIERILKTG---A-FVALDEAYYEFHGE--SYVDFLKKYENLAVIRTFSKAFSLAAQRV 211 (335)
T ss_dssp EEEEEESS-CTTTCCCC-CHHHHHHHHHTT---C-EEEEECTTHHHHCC--CCGGGGGTCSSEEEEEESTTTTTCGGGCC
T ss_pred CEEEEeCC-CCCCCCCC-CHHHHHHHHHhC---C-EEEEECcchhhcch--hHHHHhhhCCCEEEEecchhhcCCcccCe
Confidence 5565 666 66777554 555555555544 8 89999999987542 2222 233344456678999999 79999
Q ss_pred EEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhc-hhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeE
Q 011777 330 GAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID-KERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMV 408 (477)
Q Consensus 330 g~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~-~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~ 408 (477)
||+++++++++.+.... .+|+.|+++++++.++|+..+ .++..++++++.+++.+.|+++ +. ...++.|.++
T Consensus 212 G~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~-~~~~~~~~~~ 284 (335)
T 1uu1_A 212 GYVVASEKFIDAYNRVR--LPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM----GY-RITDSRGNFV 284 (335)
T ss_dssp EEEEECHHHHHHHHHHS--CTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH----TC-CBCCCCSSEE
T ss_pred EEEEeCHHHHHHHHHhc--CCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC----Cc-EEcCCCCeEE
Confidence 99999999988876533 457889999999999998632 2345666777777777777664 22 1234457777
Q ss_pred EEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777 409 GMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYS 473 (477)
Q Consensus 409 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~ 473 (477)
++.+. . ....++.+.|.++||.+.+. .+++||++. +++|+++++++|+++
T Consensus 285 ~~~~~--------~-~~~~~~~~~l~~~gi~v~~~---~~~iRis~~---~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 285 FVFME--------K-EEKERLLEHLRTKNVAVRSF---REGVRITIG---KREENDMILRELEVF 334 (335)
T ss_dssp EEECC--------T-HHHHHHHHHHHHHTEEEEEE---TTEEEEECC---CHHHHHHHHHHHHCC
T ss_pred EEECC--------C-CCHHHHHHHHHHCCEEEEEC---CCeEEEEeC---CHHHHHHHHHHHHhh
Confidence 77652 1 23557888899999999883 578999864 468899999998764
No 136
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.95 E-value=1.9e-26 Score=232.11 Aligned_cols=332 Identities=13% Similarity=0.062 Sum_probs=221.0
Q ss_pred CCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCC-EEEEeCChHHHHHHH
Q 011777 93 ENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLK-VVYFVNSGTEANELA 171 (477)
Q Consensus 93 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~-~v~~~~sGseA~~~A 171 (477)
.+|+.|+|..+.. ..+|+|++++.+++.. +. ..+..+...+++++++++++.+.+ ++++++||++|++.+
T Consensus 16 ~~~~~~~~~~g~~------~~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~ 86 (393)
T 2huf_A 16 VTPNKLLMGPGPS------NAPQRVLDAMSRPILG--HL-HPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEAT 86 (393)
T ss_dssp CCCCCEECSSSCC------CCCHHHHHHTTSCCCC--TT-SHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHH
T ss_pred CCCCeEEecCCCC------CCCHHHHHHHHhhhcc--CC-CHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHH
Confidence 4667777755432 2689999998776543 11 112345678999999999877654 899999999999999
Q ss_pred HHHHHhccCCceEEEEccCccCCccccc-ccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCC
Q 011777 172 MLMARLSTGNLGMIALRNAYHGGSSGTI-GLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG 250 (477)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~ 250 (477)
++.+. .++++|++.+++||+...... ...+. .+..++.. .....+ ++++++.++. .
T Consensus 87 ~~~~~--~~gd~vl~~~~~~~~~~~~~~~~~~g~----------~~~~v~~~--~~~~~d------~~~l~~~i~~---~ 143 (393)
T 2huf_A 87 LCNLL--EDGDVILIGHTGHWGDRSADMATRYGA----------DVRVVKSK--VGQSLS------LDEIRDALLI---H 143 (393)
T ss_dssp HHHHC--CTTCEEEEEESSHHHHHHHHHHHHTTC----------EEEEEECC--TTCCCC------HHHHHHHHHH---H
T ss_pred HHHHh--CCCCEEEEECCCcchHHHHHHHHHcCC----------eeEEEeCC--CCCCCC------HHHHHHHHhc---c
Confidence 99773 356789999999998421111 00110 12222221 111122 5788888862 1
Q ss_pred CeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceee--ecccccCccc
Q 011777 251 KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGNGLP 328 (477)
Q Consensus 251 ~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~p 328 (477)
++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ +|.. .+.+.. ..+|+++ ++|+++++.+
T Consensus 144 ~~~~v~~~~~~nptG~~~~----l~~i~~~~~~~~~~li~D~a~~-~~~~---~~~~~~--~~~d~~~~s~sK~l~g~~G 213 (393)
T 2huf_A 144 KPSVLFLTQGDSSTGVLQG----LEGVGALCHQHNCLLIVDTVAS-LGGA---PMFMDR--WEIDAMYTGSQKVLGAPPG 213 (393)
T ss_dssp CCSEEEEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTTB---CCCTTT--TTCSEEECCSSSTTCCCSS
T ss_pred CCcEEEEEccCCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCC---Ccchhh--cCccEEEECCCcccccCCC
Confidence 5678888888888897776 7899999999999999999986 5432 222222 2367765 5699876555
Q ss_pred eEEEEeCHHHHHhhcccc----------------------cccC-CCCcHHHHHHHHHHHHhhch---hhHHHHHHHHHH
Q 011777 329 LGAVVTTPEIANVMAQKI----------------------QFNT-FGGNPVCSAGGLAVLRVIDK---ERRQAHCADVGS 382 (477)
Q Consensus 329 ig~v~~~~~~~~~~~~~~----------------------~~~t-~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~ 382 (477)
+|++++++++++.+.... ...+ .+.|..+++++.++++.+.+ ++..++++++.+
T Consensus 214 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~ 293 (393)
T 2huf_A 214 ITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAK 293 (393)
T ss_dssp CEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred eEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 699999999988775430 0111 23466777777778877643 346677788888
Q ss_pred HHHHHHHHHHHhCCCceeee-ccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHc-CceeeccCC--CCCEEEEeC-CCC
Q 011777 383 HLLGRLRTLQERHDIIGDVR-GRGLMVGMELVTDRKEKTPAKAETAVLFEKLREL-GVLVGKGGL--HGNVFRIKP-PMC 457 (477)
Q Consensus 383 ~l~~~L~~l~~~~~~~~~v~-g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~--~~~~iRi~p-~~~ 457 (477)
++.+.|+++ ......... ..+.++++.+... ....++.+.|+++ ||.+.++.. ..+++||++ +..
T Consensus 294 ~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~ 363 (393)
T 2huf_A 294 RLYRGLQDA--GFELYADPKDRLSTVTTIKVPQG--------VDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQN 363 (393)
T ss_dssp HHHHHHHHT--TCCBSSCGGGBCTTEEEEECCTT--------CCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGG
T ss_pred HHHHHHHHc--CCeeccCccccCCcEEEEEcCCC--------CCHHHHHHHHHHhCCEEEecCcccccCCEEEEEcccCc
Confidence 888888775 232222111 1244666665211 1145678888765 999987642 357999998 556
Q ss_pred CcHHHHHHHHHHHHHHHhh
Q 011777 458 FTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 458 ~t~e~i~~~l~~l~~~l~~ 476 (477)
.+++++++++++|++++++
T Consensus 364 ~~~e~i~~~~~~l~~~~~~ 382 (393)
T 2huf_A 364 ATTERVDRVLQVFQEAVAA 382 (393)
T ss_dssp CSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 7899999999999998764
No 137
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.94 E-value=4.6e-26 Score=235.04 Aligned_cols=355 Identities=16% Similarity=0.157 Sum_probs=213.3
Q ss_pred CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHH
Q 011777 94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAML 173 (477)
Q Consensus 94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~ 173 (477)
.|+.||||.+++++ ++|.+++.+++..... .....+...+|+++|+++++. ++++||+||++|+++|++
T Consensus 41 ~g~~ylD~~~~~~~-------~~v~~a~~~~~~~~~~--~y~~~~~~~~l~~~la~~~~~--~~v~~t~ggt~A~~~al~ 109 (467)
T 1ax4_A 41 SSAVYIDLLTDSGT-------NAMSDHQWAAMITGDE--AYAGSRNYYDLKDKAKELFNY--DYIIPAHQGRGAENILFP 109 (467)
T ss_dssp GGGCSEECSCSSSC-------CCEEHHHHHHHHTCCC--CSSSCHHHHHHHHHHHHHHCC--CEEEEESSHHHHHHHHHH
T ss_pred CCceeeecccCcCC-------HHHHHHHHHHHhhccc--ccccCccHHHHHHHHHHHcCC--CcEEEcCCcHHHHHHHHH
Confidence 47789999887753 7788888887654321 112356678999999999854 789999999999999999
Q ss_pred HHHhc---cCCce--EEEEccCcc-CCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc
Q 011777 174 MARLS---TGNLG--MIALRNAYH-GGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG 247 (477)
Q Consensus 174 ~ar~~---~~~~~--ii~~~~~yh-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~ 247 (477)
+++.+ +|+.+ ||+. .+| +.+...+...+......... .........++.... | +++|+++++..
T Consensus 110 ~~~~~~~~~Gd~~~~viv~--~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~--d----~~~le~~i~~~ 179 (467)
T 1ax4_A 110 VLLKYKQKEGKAKNPVFIS--NFHFDTTAAHVELNGCKAINIVTE--KAFDSETYDDWKGDF--D----IKKLKENIAQH 179 (467)
T ss_dssp HHHHHHHHTTCCSSCEEEE--SSCCHHHHHHHHHTTCEEEECBCG--GGGCTTSCCTTTTCB--C----HHHHHHHHHHH
T ss_pred HHHHhhccCCCccceEEEe--ccccchhhHHHhccCCceeccccc--ccccccccCCccccc--C----HHHHHHHHHhc
Confidence 88763 44431 5555 444 44333333322111100000 000000000111111 2 58888888732
Q ss_pred CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccC---c-------cCCCCCCcccc-ccCCCcce
Q 011777 248 TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTG---F-------GRTGSHYWGFE-TQGVIPDI 316 (477)
Q Consensus 248 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g---f-------gr~G~~~~~~~-~~gv~pDi 316 (477)
..+++++|++++++|++|..+++.+++++|+++|++||++||+||++.. + ++.|.....+. .....+|+
T Consensus 180 ~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 259 (467)
T 1ax4_A 180 GADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADA 259 (467)
T ss_dssp CGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSE
T ss_pred CCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccce
Confidence 2236899999999988855788899999999999999999999998752 0 22221000000 00012466
Q ss_pred e--eecccccCccceE-EEEeC-H-HHHHhhcccc----cccCCCCcHHHHHH-HHHHHHhhchhhHHHHHHHHHHHHHH
Q 011777 317 V--TMAKGIGNGLPLG-AVVTT-P-EIANVMAQKI----QFNTFGGNPVCSAG-GLAVLRVIDKERRQAHCADVGSHLLG 386 (477)
Q Consensus 317 v--t~sK~lg~G~pig-~v~~~-~-~~~~~~~~~~----~~~t~~~~~~~~aa-a~a~l~~l~~~~~~~~~~~~~~~l~~ 386 (477)
+ +++|+++ +|+| +++++ + ++++.+.... ...++++++..+.+ ..++++.+.+++..++..++++++++
T Consensus 260 ~~~s~sK~~g--~~~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~ 337 (467)
T 1ax4_A 260 LTMSAKKDPL--LNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGD 337 (467)
T ss_dssp EEEETTSTTC--CSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred EEEeccccCC--CCcceEEEeCCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 5 4567664 5654 55566 6 7777654321 12345554444333 33356655444455666677788888
Q ss_pred HHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCc-cHHHHHHHHHHH-HHcCceeeccCC---------------CCCE
Q 011777 387 RLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTP-AKAETAVLFEKL-RELGVLVGKGGL---------------HGNV 449 (477)
Q Consensus 387 ~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~-~~~~~~~~~~~l-~~~Gv~v~~~~~---------------~~~~ 449 (477)
.|++. ..+.+. +..|.++++.+..- ....+ ......++.+.| .++||.+.+++. ..++
T Consensus 338 ~L~~~--~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~ 412 (467)
T 1ax4_A 338 RLREA--GIPIQY--PTGGHAVFVDCKKL-VPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEF 412 (467)
T ss_dssp HHHHT--TCCBCS--SCCSSEEEEESTTT-CTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCE
T ss_pred HHHhC--CCCccc--CCCceEEEEehhhh-ccccccCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccce
Confidence 88762 333322 23355666652100 00001 111345788888 889999987211 1279
Q ss_pred EEEeCC-CCCcHHHHHHHHHHHHHHHhh
Q 011777 450 FRIKPP-MCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 450 iRi~p~-~~~t~e~i~~~l~~l~~~l~~ 476 (477)
+||+++ ..+|++|+++++++|++++++
T Consensus 413 iRls~~~~~~t~e~i~~~~~~l~~~~~~ 440 (467)
T 1ax4_A 413 MRLTIARRVYTNDHMDYIADALIGLKEK 440 (467)
T ss_dssp EEEECCTTSSCHHHHHHHHHHHHTTHHH
T ss_pred EEEecccccCCHHHHHHHHHHHHHHHHh
Confidence 999999 558999999999999887653
No 138
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.94 E-value=6.5e-26 Score=229.90 Aligned_cols=324 Identities=12% Similarity=0.083 Sum_probs=214.3
Q ss_pred CCCCCHHHHHHHHHHHhhcccc-ccccCChHHHHHHHHHHhhCCCCCCEEE-EeCChHHHHHHHHHHHHhccCCceEEEE
Q 011777 110 CGHCHPDVLNAIFEQSKLLQHA-TTIYLHHAIADFAEALASKMPGNLKVVY-FVNSGTEANELAMLMARLSTGNLGMIAL 187 (477)
Q Consensus 110 lGh~~p~v~~Av~~~l~~~~~~-~~~~~~~~~~~l~~~La~~~~~~~~~v~-~~~sGseA~~~Al~~ar~~~~~~~ii~~ 187 (477)
+++.++.+.+++.+++.+.... ......+...+++++|+++++.+.+.++ +++||++|++.+++.. ..++++|++.
T Consensus 15 ~~p~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l--~~~gd~Vl~~ 92 (416)
T 3isl_A 15 MTPGPVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASV--IEPEDDVLIP 92 (416)
T ss_dssp CSSSSCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHH--CCTTCEEEEE
T ss_pred ecCCCcCcCHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHh--cCCCCEEEEe
Confidence 4444444444454544432111 1111245578999999999987666655 9999999999999866 4577899999
Q ss_pred ccCccCCccc-ccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCe
Q 011777 188 RNAYHGGSSG-TIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGA 266 (477)
Q Consensus 188 ~~~yhG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~ 266 (477)
+++||+.... ..... |...+.++......++ +++++++++. +++++|+++++++++|.
T Consensus 93 ~~~~~~~~~~~~~~~~------------g~~~~~v~~~~~~~~d------~~~l~~~i~~---~~~~~v~~~~~~nptG~ 151 (416)
T 3isl_A 93 IYGRFGYLLTEIAERY------------GANVHMLECEWGTVFD------PEDIIREIKK---VKPKIVAMVHGETSTGR 151 (416)
T ss_dssp ESSHHHHHHHHHHHHT------------TCEEEEEECCTTCCCC------HHHHHHHHHH---HCCSEEEEESEETTTTE
T ss_pred cCCcccHHHHHHHHhc------------CCeeEEEecCCCCCCC------HHHHHHHHhh---CCCcEEEEEccCCCCce
Confidence 9999983221 11111 2222222211111122 5788888862 25688889888899997
Q ss_pred eeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceee--ecccccCccceEEEEeCHHHHHhhcc
Q 011777 267 VELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGNGLPLGAVVTTPEIANVMAQ 344 (477)
Q Consensus 267 ~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~pig~v~~~~~~~~~~~~ 344 (477)
+.+ +++|.++|++||+++|+||+|+ ++. ..+..+.++ +|+++ ++|+++++.++|++++++++++.+..
T Consensus 152 ~~~----l~~i~~l~~~~~~~li~D~a~~-~~~---~~~~~~~~~--~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~ 221 (416)
T 3isl_A 152 IHP----LKAIGEACRTEDALFIVDAVAT-IGG---CEVKVDEWK--IDAAIGGTQKCLSVPSGMAPITYNERVADVIAA 221 (416)
T ss_dssp ECC----CHHHHHHHHHTTCEEEEECTTT-TTT---SCCCTTTTT--CSEEECCSSSTTCCCSSEEEEEECHHHHHHHHT
T ss_pred ecC----HHHHHHHHHHcCCEEEEECCcc-ccC---CCcchhhcC--CCEEEecCccccCCCCCeEEEEECHHHHHHhhc
Confidence 776 8999999999999999999987 322 122223333 56664 56998888889999999998877653
Q ss_pred cc--------------------------------------cccCCCCcHHHHHHHHHHHHhhchh---hHHHHHHHHHHH
Q 011777 345 KI--------------------------------------QFNTFGGNPVCSAGGLAVLRVIDKE---RRQAHCADVGSH 383 (477)
Q Consensus 345 ~~--------------------------------------~~~t~~~~~~~~aaa~a~l~~l~~~---~~~~~~~~~~~~ 383 (477)
.. .....+.|..++++..++++.+.+. +..++++++.++
T Consensus 222 ~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~ 301 (416)
T 3isl_A 222 RKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAA 301 (416)
T ss_dssp C------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred cccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 11 1123345778888888888876543 677778888888
Q ss_pred HHHHHHHHHHhCCCceee-eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHc-CceeeccC--CCCCEEEEeCCCCCc
Q 011777 384 LLGRLRTLQERHDIIGDV-RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLREL-GVLVGKGG--LHGNVFRIKPPMCFT 459 (477)
Q Consensus 384 l~~~L~~l~~~~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~--~~~~~iRi~p~~~~t 459 (477)
+.+.|+++ ........ ...+.++++.+... ....++.+.|.++ ||.+.++. ..++++||+++...+
T Consensus 302 l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~ 371 (416)
T 3isl_A 302 LAAGIKAM--GLRLFGDDSCKMPVVTCVEIPGG--------IDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSC 371 (416)
T ss_dssp HHHHHHHT--TCCBCSCGGGBCTTEEEEECCTT--------CCHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGC
T ss_pred HHHHHHHc--CCEeccCccccCCcEEEEeCCCC--------CCHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCC
Confidence 88888774 22222111 11256666665211 1245788888887 99998763 235799999866666
Q ss_pred HHH-HHHHHHHHHHHHhh
Q 011777 460 KDD-ADFLVDALDYSMSK 476 (477)
Q Consensus 460 ~e~-i~~~l~~l~~~l~~ 476 (477)
++| +++++++|++++++
T Consensus 372 ~~e~i~~~~~~l~~~~~~ 389 (416)
T 3isl_A 372 RKENVLFVLAGLEAVLLR 389 (416)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 666 99999999998865
No 139
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.94 E-value=7.8e-26 Score=228.75 Aligned_cols=333 Identities=14% Similarity=0.083 Sum_probs=216.2
Q ss_pred CEEEeecCCcccccCCCCCHHHHHHHHHHHhh-cc--cccccc--CChH---HHH-HHHHHHhhCCCCCCEEEEeCChHH
Q 011777 96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKL-LQ--HATTIY--LHHA---IAD-FAEALASKMPGNLKVVYFVNSGTE 166 (477)
Q Consensus 96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~-~~--~~~~~~--~~~~---~~~-l~~~La~~~~~~~~~v~~~~sGse 166 (477)
++|||+.++... + +|+|.+++.+++.+ .. +....+ ..+. .++ .+++++++++.+. ..+++++|++
T Consensus 23 ~~~i~~~~~~~~--~---~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~-~~i~~~sGt~ 96 (407)
T 2dkj_A 23 REGLELIASENF--V---SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAW-ANVQPHSGSQ 96 (407)
T ss_dssp HTSEECCTTCCC--C---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE-EECCCSSHHH
T ss_pred hcceeeccCCCC--C---CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCc-ceEEecchHH
Confidence 368899888753 3 89999999998864 21 111111 1222 222 2258888886643 3356778899
Q ss_pred HHHHHHHHHHhccCCceEEEEccCccCCc--ccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHH
Q 011777 167 ANELAMLMARLSTGNLGMIALRNAYHGGS--SGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHI 244 (477)
Q Consensus 167 A~~~Al~~ar~~~~~~~ii~~~~~yhG~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i 244 (477)
|++.+++.+. .+++.|++.+++|++.. .......+.. +..++.+... ..+..| .+++++.+
T Consensus 97 a~~~~~~~~~--~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~-~~~~~d----~~~l~~~l 159 (407)
T 2dkj_A 97 ANMAVYMALM--EPGDTLMGMDLAAGGHLTHGSRVNFSGKL----------YKVVSYGVRP-DTELID----LEEVRRLA 159 (407)
T ss_dssp HHHHHHHHHC--CTTCEEEEECGGGTCCGGGTCTTSHHHHH----------SEEEEECCCT-TTSSCC----HHHHHHHH
T ss_pred HHHHHHHHhc--CCCCEEEEecccccCccchHHHHHhcCce----------EEEEecCCCc-ccCccC----HHHHHHHH
Confidence 9999999873 46678999999998774 2222222110 0111111000 011112 57888888
Q ss_pred hccCCCCeeEEEe-cccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccC-ccCCCCCCccccccCCCccee--eec
Q 011777 245 DFGTSGKVAGFIA-ETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTG-FGRTGSHYWGFETQGVIPDIV--TMA 320 (477)
Q Consensus 245 ~~~~~~~~a~vi~-epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g-fgr~G~~~~~~~~~gv~pDiv--t~s 320 (477)
+. .++++|++ +|+++ .+.+ +++|.++|++||+++|+||+|++ +...| ..... .+ .+|++ ++|
T Consensus 160 ~~---~~~~~v~~~~p~~~---~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~-~~~~~--~~-~~di~~~s~s 225 (407)
T 2dkj_A 160 LE---HRPKVIVAGASAYP---RFWD----FKAFREIADEVGAYLVVDMAHFAGLVAAG-LHPNP--LP-YAHVVTSTTH 225 (407)
T ss_dssp HH---HCCSEEEECCSSCC---SCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTT-CSCCC--TT-TCSEEEEESS
T ss_pred hh---cCCeEEEEeccccC---CCCC----HHHHHHHHHHcCCEEEEEccccccccccC-ccCCc--cc-cccEEEEecc
Confidence 62 14566666 77765 2333 89999999999999999999986 54445 22111 11 25777 789
Q ss_pred ccccCccceEEEEeC-HHHHHhhcccc-cccCCCCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhC
Q 011777 321 KGIGNGLPLGAVVTT-PEIANVMAQKI-QFNTFGGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERH 395 (477)
Q Consensus 321 K~lg~G~pig~v~~~-~~~~~~~~~~~-~~~t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~ 395 (477)
|+++ |+++|+++++ +++++.+.... ++.+.+.++..++++.++++.+.. +++.++++++.+++.+.|+++ ..
T Consensus 226 K~l~-g~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~ 302 (407)
T 2dkj_A 226 KTLR-GPRGGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR--GY 302 (407)
T ss_dssp GGGC-CCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT--TC
T ss_pred ccCC-CCCceEEEECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC--Cc
Confidence 9887 5678999999 89988776533 334445677777777788877533 456777778888888877764 22
Q ss_pred CCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC--------CCCEEEEeCCC----CCcHHHH
Q 011777 396 DIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL--------HGNVFRIKPPM----CFTKDDA 463 (477)
Q Consensus 396 ~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--------~~~~iRi~p~~----~~t~e~i 463 (477)
..... ++.|.++++++.... .....+.+.|.++||.+.++.. ..+++|++++. .++++|+
T Consensus 303 ~~~~~-~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i 374 (407)
T 2dkj_A 303 RIVTG-GTDNHLFLVDLRPKG-------LTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEM 374 (407)
T ss_dssp EEGGG-SCSSSEEEEECGGGT-------CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGH
T ss_pred eeecC-CCCceEEEEECcccC-------CCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHH
Confidence 22211 356888888774210 0145678889999999987632 24689998765 3799999
Q ss_pred HHHHHHHHHHHhh
Q 011777 464 DFLVDALDYSMSK 476 (477)
Q Consensus 464 ~~~l~~l~~~l~~ 476 (477)
++++++|++++++
T Consensus 375 ~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 375 PLVAELIDRALLE 387 (407)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988753
No 140
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.94 E-value=2.1e-26 Score=227.85 Aligned_cols=316 Identities=15% Similarity=0.107 Sum_probs=215.3
Q ss_pred CCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCC--CCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccC
Q 011777 113 CHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGN--LKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNA 190 (477)
Q Consensus 113 ~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~--~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~ 190 (477)
.+|+|++++.+++.. +.. ....+...+++++|+++++.+ .+++++++||++|++.+++.+. + ++|++.+++
T Consensus 11 ~~~~v~~a~~~~~~~--~~~-~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~---~-d~vl~~~~~ 83 (353)
T 2yrr_A 11 IPERVQKALLRPMRG--HLD-PEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD---R-GPVLVLVNG 83 (353)
T ss_dssp CCHHHHGGGGSCCCC--TTC-HHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS---C-CCEEEEECS
T ss_pred CCHHHHHHHhccccc--ccC-HHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc---C-CcEEEEcCC
Confidence 589999998876653 211 111344789999999998764 5789999999999999998553 3 789999999
Q ss_pred ccCCccc-ccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeC
Q 011777 191 YHGGSSG-TIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVEL 269 (477)
Q Consensus 191 yhG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~ 269 (477)
||+.... .....+. .+..++... ....+ .+++++.++. .++++|+++++++++|.+.+
T Consensus 84 ~~~~~~~~~~~~~g~----------~~~~v~~~~--~~~~d------~~~l~~~l~~---~~~~~v~~~~~~nptG~~~~ 142 (353)
T 2yrr_A 84 AFSQRVAEMAALHGL----------DPEVLDFPP--GEPVD------PEAVARALKR---RRYRMVALVHGETSTGVLNP 142 (353)
T ss_dssp HHHHHHHHHHHHTTC----------CEEEEECCT--TSCCC------HHHHHHHHHH---SCCSEEEEESEETTTTEECC
T ss_pred CchHHHHHHHHHcCC----------ceEEEeCCC--CCCCC------HHHHHHHHHh---CCCCEEEEEccCCCcceecC
Confidence 9985111 1111110 122232211 11122 5788888862 15678888888888998776
Q ss_pred CchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceee--ecccccCccceEEEEeCHHHHHhhcc---
Q 011777 270 APGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGNGLPLGAVVTTPEIANVMAQ--- 344 (477)
Q Consensus 270 ~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~pig~v~~~~~~~~~~~~--- 344 (477)
+++|.++|++||+++|+||+|+ +|... +.+..++ +|+++ ++|.++++.++|++++++++++.+..
T Consensus 143 ----~~~i~~l~~~~~~~li~D~a~~-~~~~~---~~~~~~~--~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~~~~ 212 (353)
T 2yrr_A 143 ----AEAIGALAKEAGALFFLDAVTT-LGMLP---FSMRAMG--VDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRG 212 (353)
T ss_dssp ----HHHHHHHHHHHTCEEEEECTTT-TTTSC---CCHHHHT--CSEEECCTTSTTCCCSSCEEEEECHHHHHHCCCCSC
T ss_pred ----HHHHHHHHHHcCCeEEEEcCcc-ccccc---ccccccC--ceEEEecCcccccCCCceEEEEECHHHHHHhccCCC
Confidence 8999999999999999999994 65432 2233333 56665 56988876668999999999877651
Q ss_pred c------------ccccCCCCcHHHHHHHHHHHHhhchh---hHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEE
Q 011777 345 K------------IQFNTFGGNPVCSAGGLAVLRVIDKE---RRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVG 409 (477)
Q Consensus 345 ~------------~~~~t~~~~~~~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~ 409 (477)
. .....++.|+.+++++.++++.+.++ +..++++++.+++.+.|+++ ...........+.+++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~ 290 (353)
T 2yrr_A 213 WYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR--GFRPYPKASPLPTVLV 290 (353)
T ss_dssp STTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCEESCSSSBCTTEEE
T ss_pred ccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC--CCccccCccCCCeEEE
Confidence 0 11223456778888888888876543 46677778888888888764 2221111111355556
Q ss_pred EEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC--CCCEEEEeCCCCCcHHHHH-HHHHHHHHHHhh
Q 011777 410 MELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL--HGNVFRIKPPMCFTKDDAD-FLVDALDYSMSK 476 (477)
Q Consensus 410 i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p~~~~t~e~i~-~~l~~l~~~l~~ 476 (477)
+.+... ....++.+.|.++||.+.++.. ..+++|++++...+++|++ +++++|+++++.
T Consensus 291 ~~~~~~--------~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 291 VRPPEG--------VDADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp EECCTT--------CCHHHHHHHHHHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred EECCCC--------CCHHHHHHHHHHCCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 665211 1145788899999999987642 2578999988888999999 999999998864
No 141
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.94 E-value=8.4e-26 Score=223.77 Aligned_cols=313 Identities=17% Similarity=0.089 Sum_probs=212.1
Q ss_pred CCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCcc
Q 011777 113 CHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYH 192 (477)
Q Consensus 113 ~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yh 192 (477)
.+|+|++++.+++.. + ......+...+++++|+++++.+.+.+++++||++|++.+++.+. .++++|++.+++|+
T Consensus 12 ~~~~v~~a~~~~~~~--~-~~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~--~~gd~vl~~~~~~~ 86 (352)
T 1iug_A 12 LHPKALEALARPQLH--H-RTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLF--APGERVLVPVYGKF 86 (352)
T ss_dssp CCHHHHHHHHSCCCC--T-TSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHC--CTTCEEEEEECSHH
T ss_pred CCHHHHHHhccCCCC--c-cCHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhcc--CCCCeEEEEeCCch
Confidence 689999999886642 1 111123456889999999987766789999999999999999763 35678999999999
Q ss_pred CCccccc-ccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCc
Q 011777 193 GGSSGTI-GLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAP 271 (477)
Q Consensus 193 G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~ 271 (477)
+.....+ ...+. .+..++.+. ...++ .+++++ +++++|+++++++++|.+.+
T Consensus 87 ~~~~~~~~~~~g~----------~~~~v~~~~--~~~~d------~~~l~~-------~~~~~v~~~~~~nptG~~~~-- 139 (352)
T 1iug_A 87 SERFYEIALEAGL----------VVERLDYPY--GDTPR------PEDVAK-------EGYAGLLLVHSETSTGALAD-- 139 (352)
T ss_dssp HHHHHHHHHHTTC----------EEEEEECCT--TCCCC------TTTSCC-------SSCSEEEEESEETTTTEECC--
T ss_pred hHHHHHHHHHcCC----------ceEEEeCCC--CCCCC------HHHHhc-------cCCcEEEEEEecCCcceecC--
Confidence 8641111 10110 122222211 11111 133322 35678888888888998776
Q ss_pred hhHHHHHHHHHHh--CcEEEEcCcccCccCCCCCCccccccCCCcceee--ecccccCccceEEEEeCHHHHHhhcc---
Q 011777 272 GYLKLVYDIVRKA--GGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGNGLPLGAVVTTPEIANVMAQ--- 344 (477)
Q Consensus 272 ~~l~~l~~l~~~~--gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~pig~v~~~~~~~~~~~~--- 344 (477)
+++|.++|++| |+++|+||+|+ +|.. .+....++ +|+++ ++|+++++.++|++++++++++.+..
T Consensus 140 --l~~i~~l~~~~~~~~~li~D~a~~-~~~~---~~~~~~~~--~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~ 211 (352)
T 1iug_A 140 --LPALARAFKEKNPEGLVGADMVTS-LLVG---EVALEAMG--VDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGY 211 (352)
T ss_dssp --HHHHHHHHHHHCTTCEEEEECTTT-BTTB---CCCSGGGT--CSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSS
T ss_pred --HHHHHHHHHhhCCCCEEEEECCcc-ccCc---ceeccccC--eeEEEecCcccccCCCceeEEEECHHHHHHhhCCCc
Confidence 89999999999 99999999996 5432 22223233 56664 66988876678999999997755211
Q ss_pred ----------c-ccccCCCCcHHHHHHHHHHHHhhchh--hHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEE
Q 011777 345 ----------K-IQFNTFGGNPVCSAGGLAVLRVIDKE--RRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGME 411 (477)
Q Consensus 345 ----------~-~~~~t~~~~~~~~aaa~a~l~~l~~~--~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~ 411 (477)
. .....++.|+.+++++.++++.+++. +..++++++.+++.+.|+++ ........ ..+.++++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~-~~~~~~~~~ 288 (352)
T 1iug_A 212 YLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEG--GLRPVPKR-FSPAVAAFY 288 (352)
T ss_dssp TTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT--TCEESCSS-BCTTCEEEE
T ss_pred eeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCcccccc-cCCeEEEEE
Confidence 0 12234456788888888888876543 56677777777777777664 22111110 156777877
Q ss_pred EeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC--CCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 412 LVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL--HGNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
+... ....++.+.|.++||.+.++.. ..+++||+++...+++|+++++++|++++++
T Consensus 289 ~~~~--------~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 347 (352)
T 1iug_A 289 LPEG--------VPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEE 347 (352)
T ss_dssp CCTT--------CCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred cCCC--------CCHHHHHHHHHHCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHHH
Confidence 6311 1145688899999999987642 2578999999888999999999999998764
No 142
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.94 E-value=2.7e-26 Score=236.76 Aligned_cols=346 Identities=14% Similarity=0.112 Sum_probs=208.9
Q ss_pred CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccccc-CChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHH
Q 011777 95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIY-LHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAML 173 (477)
Q Consensus 95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~-~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~ 173 (477)
|+.||||.+++++ |+|++++.+++.... ..| ..+...+|+++|+++++. ++++|++||+||++.|++
T Consensus 40 ~~~ylD~~~~~~~-------~~v~~a~~~~l~~~~---~~y~~~~~~~~l~~~la~~~~~--~~v~~t~~gt~A~~~al~ 107 (467)
T 2oqx_A 40 EDVFIDLLTDSGT-------GAVTQSMQAAMMRGD---EAYSGSRSYYALAESVKNIFGY--QYTIPTHQGRGAEQIYIP 107 (467)
T ss_dssp GGCSEECSCCSSC-------SCCCHHHHHHTTSCC---CCSSSCHHHHHHHHHHHHHHCC--SEEEEEC--CCSHHHHHH
T ss_pred CCeeEecccCCCc-------HHHHHHHHHHhccCc---ceeccCchhHHHHHHHHHHhCc--CcEEEcCCcHHHHHHHHH
Confidence 6689999887763 789999988875422 123 356678999999999854 789999999999999999
Q ss_pred HHHhcc----C--C-ceEEEEccCccCCccccccc-ccCCCCCCCCCCCCeeeecCC----CCcCCCCCCCHHHHHHHHH
Q 011777 174 MARLST----G--N-LGMIALRNAYHGGSSGTIGL-TALNTWKYPIPQGEIHHVVNP----DPYHGSFGSDAARYAQDLQ 241 (477)
Q Consensus 174 ~ar~~~----~--~-~~ii~~~~~yhG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~le 241 (477)
+++..+ | + +.|+.. .||+.+...... .+..... ++.....+ .++.... | +++|+
T Consensus 108 ~~~~~~~~~~G~~~~d~Ii~~--~~h~~t~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~--d----~~~Le 173 (467)
T 2oqx_A 108 VLIKKREQEKGLDRSKMVAFS--NYFFDTTQGHSQINGCTVRN------VYIKEAFDTGVRYDFKGNF--D----LEGLE 173 (467)
T ss_dssp HHHHHHHHHHCCCTTTCEEEE--SSCCHHHHHHHHHTTCEEEE------CBCTTTTCTTSCCTTTTCB--C----HHHHH
T ss_pred HHhccccccCCCCccceEEec--ccccccchhhhhccCcceee------ccccccccCCCCCCccCCc--C----HHHHH
Confidence 987652 4 2 556654 578653221111 1100000 00000000 0111111 2 58888
Q ss_pred HHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccC----------ccCCCCCCcccc--c
Q 011777 242 DHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTG----------FGRTGSHYWGFE--T 309 (477)
Q Consensus 242 ~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g----------fgr~G~~~~~~~--~ 309 (477)
++++....+++++|++++++|++|..+++.+++++|+++|++||++||+|++|.. .++.|.....+. .
T Consensus 174 ~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~ 253 (467)
T 2oqx_A 174 RGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRET 253 (467)
T ss_dssp HHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHH
T ss_pred HHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhh
Confidence 8887321136899999998888644778999999999999999999999977643 133341111110 0
Q ss_pred cCCCcc--eeeecccccCccce-EEEEeCHH-HHHhh---cccc----cccCCCCcHHHHHHHH-HHHHhhchhhHHHHH
Q 011777 310 QGVIPD--IVTMAKGIGNGLPL-GAVVTTPE-IANVM---AQKI----QFNTFGGNPVCSAGGL-AVLRVIDKERRQAHC 377 (477)
Q Consensus 310 ~gv~pD--ivt~sK~lg~G~pi-g~v~~~~~-~~~~~---~~~~----~~~t~~~~~~~~aaa~-a~l~~l~~~~~~~~~ 377 (477)
+ ..+| +.+++|+++. |+ |+++++++ +++.+ .... ...+++.......+++ ..++...+++..++.
T Consensus 254 ~-~~~d~~~~s~sK~~g~--~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~~~~~~~~ 330 (467)
T 2oqx_A 254 Y-KYADMLAMSAKKDAMV--PMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYR 330 (467)
T ss_dssp G-GGCSEEEEESSSTTCC--SSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred h-ccCCeEEEecccccCC--CCceEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhhHHHHHHH
Confidence 0 1134 4567898863 43 56677766 44333 2211 1112333322222222 223322223455666
Q ss_pred HHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEee--CCCCCCccHHHHHHHHHHH-HHcCceeeccCC---------
Q 011777 378 ADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVT--DRKEKTPAKAETAVLFEKL-RELGVLVGKGGL--------- 445 (477)
Q Consensus 378 ~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~--~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~--------- 445 (477)
.++++++.+.|+++ .++.+ +..|.++++++.. .... ........+.+.| .++||.+.+++.
T Consensus 331 ~~~~~~l~~~L~~~--~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~ 403 (467)
T 2oqx_A 331 IAQVQYLVDGLEEI--GVVCQ---QAGGHAAFVDAGKLLPHIP--ADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKT 403 (467)
T ss_dssp HHHHHHHHHHHHHT--TCCEE---EECSSCEEEEHHHHSTTSC--GGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTT
T ss_pred HHHHHHHHHHHHHC--CCeee---cCCceEEEEechhhcccCC--cccccHHHHHHHHHHhcCceecccccccccccccc
Confidence 78888888888875 33333 3346667776632 1100 1110145677888 889999987542
Q ss_pred ------CCCEEEEeCCCC-CcHHHHHHHHHHHHHHHhh
Q 011777 446 ------HGNVFRIKPPMC-FTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 446 ------~~~~iRi~p~~~-~t~e~i~~~l~~l~~~l~~ 476 (477)
..+++||+++.. +|++||++++++|++++++
T Consensus 404 g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~ 441 (467)
T 2oqx_A 404 GKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_dssp CSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHS
T ss_pred cccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhh
Confidence 127999999998 9999999999999998764
No 143
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.94 E-value=4.9e-25 Score=220.32 Aligned_cols=327 Identities=13% Similarity=0.081 Sum_probs=215.2
Q ss_pred EEEeecCCcccccCCCCCHHHHHHHHHHHhhccc-cc-----cccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHH
Q 011777 97 RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH-AT-----TIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANEL 170 (477)
Q Consensus 97 ~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~-~~-----~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~ 170 (477)
-|||+.++. +.+|++.+++.+++.+... .. ..+..+...+++++++++++.+.+++++++||++|++.
T Consensus 2 iyld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~ 75 (382)
T 4hvk_A 2 AYFDYTSAK------PVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNL 75 (382)
T ss_dssp CBCBTTTCC------CCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHH
T ss_pred EeecCCCcC------CCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHH
Confidence 378876543 5789999999999876321 11 11224556789999999998777789999999999999
Q ss_pred HHHHHHh--ccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777 171 AMLMARL--STGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT 248 (477)
Q Consensus 171 Al~~ar~--~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~ 248 (477)
+++.+.. ..+++.|++.++.|++.......... .|...+.++......++ +++|++.++
T Consensus 76 ~~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~----------~g~~~~~v~~~~~~~~d------~~~l~~~i~--- 136 (382)
T 4hvk_A 76 AIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQK----------QGFEVEYIPVGKYGEVD------VSFIDQKLR--- 136 (382)
T ss_dssp HHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHHH----------TTCEEEEECBCTTSCBC------HHHHHHHCC---
T ss_pred HHHHhhhhhcCCCCEEEECCCCcHHHHHHHHHHHh----------cCCEEEEeccCCCCCcC------HHHHHHHhc---
Confidence 9997642 13567899988888876544332211 02222222211111112 578888775
Q ss_pred CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCccee--eecccccCc
Q 011777 249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGNG 326 (477)
Q Consensus 249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~G 326 (477)
+++++|+++++++++|.+.+ +++|.++|++||+ +|+||+|+ ++. ..+..+..+ +|++ +++|.+| +
T Consensus 137 -~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~-li~D~a~~-~~~---~~~~~~~~~--~d~~~~s~~K~~g-~ 203 (382)
T 4hvk_A 137 -DDTILVSVQHANNEIGTIQP----VEEISEVLAGKAA-LHIDATAS-VGQ---IEVDVEKIG--ADMLTISSNDIYG-P 203 (382)
T ss_dssp -TTEEEEECCSBCTTTCBBCC----HHHHHHHHSSSSE-EEEECTTT-BTT---BCCCHHHHT--CSEEEEESGGGTS-C
T ss_pred -cCceEEEEECCCCCceeeCC----HHHHHHHHHHcCE-EEEEhHHh-cCC---CCCCchhcC--CCEEEEeHHHhcC-C
Confidence 46789999999999998776 8999999999999 99999987 332 122233334 4555 5679654 3
Q ss_pred cceEEEEeCHHHHHhhcccccc-------cCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHhCCC
Q 011777 327 LPLGAVVTTPEIANVMAQKIQF-------NTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQERHDI 397 (477)
Q Consensus 327 ~pig~v~~~~~~~~~~~~~~~~-------~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~ 397 (477)
.++|+++++++. .+.....+ ...+.|+.++++..++++.+.+ ++..++.+++.+++.+.|++ .+.
T Consensus 204 ~g~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~ 277 (382)
T 4hvk_A 204 KGVGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLK----IEE 277 (382)
T ss_dssp TTCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----STT
T ss_pred CceEEEEEcCcc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc----CCC
Confidence 358888887764 23222211 1334577888888888876543 34556666666666665543 332
Q ss_pred ceeeec----cceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC---------------------CCEEEE
Q 011777 398 IGDVRG----RGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH---------------------GNVFRI 452 (477)
Q Consensus 398 ~~~v~g----~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~---------------------~~~iRi 452 (477)
+..... .+.++.+.+... ....+.+.|.++||.+.++..+ .+++||
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl 348 (382)
T 4hvk_A 278 SYLNGHPEKRLPNNVNVRFSYI---------EGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLL 348 (382)
T ss_dssp EEECSCSSSBCTTEEEEEETTC---------CHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEE
T ss_pred eEEeCCccccCCCEEEEEECCC---------CHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEE
Confidence 221111 123555555210 1456888999999999876311 478999
Q ss_pred eCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 453 KPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 453 ~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
+++..+|++|+++++++|++++++
T Consensus 349 ~~~~~~t~e~i~~~~~~l~~~~~~ 372 (382)
T 4hvk_A 349 TLGRYNTDEDVDRLLEVLPGVIER 372 (382)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998764
No 144
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.94 E-value=4.7e-26 Score=238.62 Aligned_cols=354 Identities=11% Similarity=0.019 Sum_probs=214.8
Q ss_pred CEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccc-ccccCChHHHHHHHHHHhh----CCCC-CCEEEEeCChHHHHH
Q 011777 96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA-TTIYLHHAIADFAEALASK----MPGN-LKVVYFVNSGTEANE 169 (477)
Q Consensus 96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~-~~~~~~~~~~~l~~~La~~----~~~~-~~~v~~~~sGseA~~ 169 (477)
..|++...+.+....++.+|++++++.+++....+. ...+..+.+..+++.+.+. .+.. .++|++|+||++|+.
T Consensus 99 ~~~~~~~i~l~~g~~~~~~~~~v~a~~~~~~~~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~ 178 (533)
T 3f6t_A 99 DKFLIDAVNYCHTELGLNRDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIV 178 (533)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHH
T ss_pred ccccHhheeccCCCCCcCCcHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHH
Confidence 344444433444456677899999998888754333 2234455667777777655 2222 368999999999999
Q ss_pred HHHHHHH---hccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhc
Q 011777 170 LAMLMAR---LSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF 246 (477)
Q Consensus 170 ~Al~~ar---~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~ 246 (477)
.+++... ...+++.|++.+++|+++......... .+..++........+..| .++|+++++
T Consensus 179 ~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~~g~-----------~~~~v~~~~~~~~~~~~d----~~~l~~~l~- 242 (533)
T 3f6t_A 179 YAFHSLAENHLLKKGDKIAINEPIFTPYLRIPELKDY-----------ELVEVDLHSYEKNDWEIE----PNEIEKLKD- 242 (533)
T ss_dssp HHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGGGGGS-----------EEEEECCCEETTTTSEEC----HHHHHHHSC-
T ss_pred HHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHHHcCC-----------eEEEEEecCCcccCCCCC----HHHHHHHhC-
Confidence 9998531 123567899999999987655443321 122222111001111112 477887765
Q ss_pred cCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHH-HhCcEEEEcCcccCccCCCCCCccccccCCCcceeeeccccc-
Q 011777 247 GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVR-KAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIG- 324 (477)
Q Consensus 247 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~-~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg- 324 (477)
.++++|+++..++++|. .++.+.+++|.++|+ +||+++|+||+|.+|.+.+..+.. ...+....+.+|||.+|
T Consensus 243 ---~~~k~v~l~~p~NPtG~-~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~-~~~~~~i~~~S~SK~~g~ 317 (533)
T 3f6t_A 243 ---PSIKALIVVNPTNPTSK-EFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYS-VVPYNTMLVYSYSKLFGC 317 (533)
T ss_dssp ---TTEEEEEEESSCTTTCB-CCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHH-HSGGGEEEEEESHHHHTC
T ss_pred ---CCCeEEEEeCCCCCCcc-ccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhh-cCCCCEEEEecCcccCCC
Confidence 46777776555677774 557888999999999 689999999999998765422221 22344456778999999
Q ss_pred CccceEEEEeCHH-----HHHhh--------------------------------cccccccCCCCcHHHHHH----HHH
Q 011777 325 NGLPLGAVVTTPE-----IANVM--------------------------------AQKIQFNTFGGNPVCSAG----GLA 363 (477)
Q Consensus 325 ~G~pig~v~~~~~-----~~~~~--------------------------------~~~~~~~t~~~~~~~~aa----a~a 363 (477)
.|+|+||++++++ +++.+ .......+.+.+++++++ +++
T Consensus 318 ~G~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~ 397 (533)
T 3f6t_A 318 TGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMT 397 (533)
T ss_dssp GGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHH
T ss_pred cccceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHH
Confidence 6999999999876 44333 233344566677777776 445
Q ss_pred HHH------hhch--hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCcc--------HHHHH
Q 011777 364 VLR------VIDK--ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPA--------KAETA 427 (477)
Q Consensus 364 ~l~------~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~--------~~~~~ 427 (477)
+|. ...+ ++..++++++.+++.+.|. .+........|+++++++..-....... .....
T Consensus 398 ~L~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-----~~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~ 472 (533)
T 3f6t_A 398 HLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-----APKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQV 472 (533)
T ss_dssp HHTTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-----CCCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHH
T ss_pred HHhhhccccchHHHHHHHHHHHHHHHHHHHHhcC-----CCccccCCCceEEEEEehHhhhhhccchHHHHHhhccCCHH
Confidence 552 1111 2233444444444444442 3322222344666676653100000000 00112
Q ss_pred HH-HHHHHHcCceeeccCCC---CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 428 VL-FEKLRELGVLVGKGGLH---GNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 428 ~~-~~~l~~~Gv~v~~~~~~---~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
++ .+.+.++||.+.|+..+ .+++||++. .++++++++++++|.+++++
T Consensus 473 ~~~~~ll~~~GV~v~pg~~f~~~~~~iRls~a-~~~~e~i~~~i~~L~~~l~~ 524 (533)
T 3f6t_A 473 DFLLKLAEKNGVVLVDGVGFGAKPGELRVSQA-NLPTEDYALIGKQVLELLKE 524 (533)
T ss_dssp HHHHHHHHHTTSSSCTTEEECSSTTEEEEESS-SSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEeCCcccCCCCCEEEEEEe-eCCHHHHHHHHHHHHHHHHH
Confidence 34 44455789999887432 478999863 36899999999999998864
No 145
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.94 E-value=1.6e-25 Score=222.16 Aligned_cols=328 Identities=13% Similarity=0.080 Sum_probs=206.4
Q ss_pred CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHH
Q 011777 95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLM 174 (477)
Q Consensus 95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ 174 (477)
...+|||.++. .++++|+|++++.+++.. +.......+...+++++|+++++ ....++|++||++|++.+++.
T Consensus 6 ~~~~id~~~~~----~~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~l~~~la~~~g-~~~~v~~~~~gt~a~~~al~~ 78 (356)
T 1v72_A 6 RPPALGFSSDN----IAGASPEVAQALVKHSSG--QAGPYGTDELTAQVKRKFCEIFE-RDVEVFLVPTGTAANALCLSA 78 (356)
T ss_dssp CCCCCBCSCGG----GCCCCHHHHHHHHHTTSS--CCCSTTCSHHHHHHHHHHHHHHT-SCCEEEEESCHHHHHHHHHHT
T ss_pred CCceEeeccCC----ccCCCHHHHHHHHhhccC--cccccccchHHHHHHHHHHHHhC-CCCcEEEeCCccHHHHHHHHH
Confidence 35689998753 467899999999987632 22222246778899999999987 334699999999999999997
Q ss_pred HHhccCCceEEEEccCccCCcccc--cccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHH-HHhc---cC
Q 011777 175 ARLSTGNLGMIALRNAYHGGSSGT--IGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQD-HIDF---GT 248 (477)
Q Consensus 175 ar~~~~~~~ii~~~~~yhG~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~-~i~~---~~ 248 (477)
++. +++.|++..++ |+..... +..... |...+.+|... ..++ +++|++ +++. .+
T Consensus 79 ~~~--~gd~vi~~~~~-~~~~~~~~~~~~~~~----------g~~~~~v~~~~-~~~d------~~~l~~~~i~~~~~~~ 138 (356)
T 1v72_A 79 MTP--PWGNIYCHPAS-HINNDECGAPEFFSN----------GAKLMTVDGPA-AKLD------IVRLRERTREKVGDVH 138 (356)
T ss_dssp SCC--TTEEEEECTTS-HHHHSSTTHHHHHTT----------SCEEEECCCGG-GCCC------HHHHHHHTTSSTTCTT
T ss_pred hcC--CCCEEEEcCcc-chhhhhchHHHHHhC----------CcEEEEecCCC-CeEc------HHHHHHHhhhcchhhc
Confidence 543 45566665554 4433322 222100 11222222211 1112 578888 7762 11
Q ss_pred CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCcc--CCCCCCccccccC--CCccee--eeccc
Q 011777 249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFG--RTGSHYWGFETQG--VIPDIV--TMAKG 322 (477)
Q Consensus 249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfg--r~G~~~~~~~~~g--v~pDiv--t~sK~ 322 (477)
..++++|++++.++ +| .+++.+++++|.++|++||++||+||+|..+. ..|... ...+ ...|++ +++|+
T Consensus 139 ~~~~~~v~~~~~~~-tG-~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~---~~~~~~~~~d~~~~s~sK~ 213 (356)
T 1v72_A 139 TTQPACVSITQATE-VG-SIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSP---AEMTWKAGVDALSFGATKN 213 (356)
T ss_dssp SCEEEEEEEESSCT-TS-CCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCT---TTTTGGGTCCEEEECCGGG
T ss_pred cCCceEEEEEcCCC-CC-ccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCH---HHhhhhhcCCEEEEecccC
Confidence 23688999998664 77 45788999999999999999999999997542 112111 1111 134554 46787
Q ss_pred ccCccceE--EEEeCHHHHHhhccc-ccccCCCCcHHHHHHHHHHHHhhchh---hHHHHHHHHHHHHHHHHHHHHHhCC
Q 011777 323 IGNGLPLG--AVVTTPEIANVMAQK-IQFNTFGGNPVCSAGGLAVLRVIDKE---RRQAHCADVGSHLLGRLRTLQERHD 396 (477)
Q Consensus 323 lg~G~pig--~v~~~~~~~~~~~~~-~~~~t~~~~~~~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~L~~l~~~~~ 396 (477)
|.|+| ++++++++++.+... .+.++.... +..++.++++.++++ ++.++.+++.+++++.|+++ +
T Consensus 214 ---g~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~----~ 284 (356)
T 1v72_A 214 ---GVLAAEAIVLFNTSLATEMSYRRKRAGHLSSK--MRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGL----G 284 (356)
T ss_dssp ---TCSSCEEEEESSGGGHHHHHHHHHHTTCCCSS--THHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTC----T
T ss_pred ---CCcCccEEEEECHHHHhhHHHHhhccCchhhh--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhC----C
Confidence 33666 788899888776532 122222221 122333445555443 34455566666666665442 2
Q ss_pred Ccee-eeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777 397 IIGD-VRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMS 475 (477)
Q Consensus 397 ~~~~-v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~ 475 (477)
.+.. .+..+.++++.+. .++.+.|.++||.+.++....+++||++++.++++++++++++|+++++
T Consensus 285 g~~~~~~~~~~~~~~~~~-------------~~~~~~l~~~gi~v~~g~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~ 351 (356)
T 1v72_A 285 GVEVLGGTEANILFCRLD-------------SAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLAAD 351 (356)
T ss_dssp TEEEESCCCSSEEEEEEC-------------HHHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHTC-
T ss_pred CcEEccCCCccEEEEEcC-------------HHHHHHHHhcCeEEeccccCCCeEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 2222 2334566677651 2578888999999987642258999999999999999999999998875
Q ss_pred h
Q 011777 476 K 476 (477)
Q Consensus 476 ~ 476 (477)
+
T Consensus 352 ~ 352 (356)
T 1v72_A 352 R 352 (356)
T ss_dssp -
T ss_pred h
Confidence 4
No 146
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.94 E-value=2.4e-25 Score=224.38 Aligned_cols=318 Identities=13% Similarity=0.111 Sum_probs=214.2
Q ss_pred CCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCC-EEEEeCChHHHHHHHHHHHHhccCCceEEEEccCc
Q 011777 113 CHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLK-VVYFVNSGTEANELAMLMARLSTGNLGMIALRNAY 191 (477)
Q Consensus 113 ~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~-~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~y 191 (477)
.+|++++++.+++.. +. ..+......++++.++++++.+.+ ++++++||++|++.+++.+. .++++|++.+++|
T Consensus 29 ~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~--~~gd~vl~~~~~~ 103 (396)
T 2ch1_A 29 CSKRVLTAMTNTVLS--NF-HAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLL--EEGDRVLIAVNGI 103 (396)
T ss_dssp CCHHHHHHTTSCCCC--TT-CHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC--CTTCEEEEEESSH
T ss_pred CCHHHHHHhcccccc--CC-ChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhc--CCCCeEEEEcCCc
Confidence 578898888765432 11 112234578899999999887666 89999999999999998763 3567899999999
Q ss_pred cCCcc-cccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCC
Q 011777 192 HGGSS-GTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELA 270 (477)
Q Consensus 192 hG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~ 270 (477)
++... ......+. .+..++... .... | ++++++.++. .++++|+++++++++|.+.+
T Consensus 104 ~~~~~~~~~~~~g~----------~~~~v~~~~--~~~~--d----~~~l~~~l~~---~~~~~v~~~~~~nptG~~~~- 161 (396)
T 2ch1_A 104 WAERAVEMSERYGA----------DVRTIEGPP--DRPF--S----LETLARAIEL---HQPKCLFLTHGDSSSGLLQP- 161 (396)
T ss_dssp HHHHHHHHHHHTTC----------EEEEEECCT--TSCC--C----HHHHHHHHHH---HCCSEEEEESEETTTTEECC-
T ss_pred ccHHHHHHHHHcCC----------ceEEecCCC--CCCC--C----HHHHHHHHHh---CCCCEEEEECCCCCCceecC-
Confidence 98631 11111111 122222211 1111 2 5788888862 14678888888888887776
Q ss_pred chhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec--ccccCccceEEEEeCHHHHHhhcccc--
Q 011777 271 PGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA--KGIGNGLPLGAVVTTPEIANVMAQKI-- 346 (477)
Q Consensus 271 ~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~~~~~~~~~~~~~~-- 346 (477)
+++|.++|++||+++|+||+|+ +|.. .+.++ ...+|++++| |.++++.++|++++++++++.+....
T Consensus 162 ---~~~i~~l~~~~~~~li~Dea~~-~g~~---~~~~~--~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~ 232 (396)
T 2ch1_A 162 ---LEGVGQICHQHDCLLIVDAVAS-LCGV---PFYMD--KWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTK 232 (396)
T ss_dssp ---CTTHHHHHHHTTCEEEEECTTT-BTTB---CCCTT--TTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSC
T ss_pred ---HHHHHHHHHHcCCEEEEEcccc-ccCC---ccchh--hcCcCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCc
Confidence 7899999999999999999997 6532 22222 2346777654 99988777899999999887764210
Q ss_pred ---------------------cccCCCCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCCCceeee
Q 011777 347 ---------------------QFNTFGGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERHDIIGDVR 402 (477)
Q Consensus 347 ---------------------~~~t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~ 402 (477)
....++.+..+++++.++++.+.+ ++..++++++.+++.+.|+++ .........
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~ 310 (396)
T 2ch1_A 233 SKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM--GLDIFVKDP 310 (396)
T ss_dssp CSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH--TCCBSSCSG
T ss_pred ccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC--CCeeccCCc
Confidence 112234577888888888887643 356777788888888888776 232222111
Q ss_pred --ccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHc-CceeeccCC--CCCEEEEeC-CCCCcHHHHHHHHHHHHHHHhh
Q 011777 403 --GRGLMVGMELVTDRKEKTPAKAETAVLFEKLREL-GVLVGKGGL--HGNVFRIKP-PMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 403 --g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~--~~~~iRi~p-~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
..+.++++.+... ....++.+.|+++ ||.+.++.. ..+++||++ ++..+++|+++++++|++++++
T Consensus 311 ~~~~~~~~~~~~~~~--------~~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~ 382 (396)
T 2ch1_A 311 RHRLPTVTGIMIPKG--------VDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKA 382 (396)
T ss_dssp GGBCTTEEEEECCTT--------CCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred cccCCceEEEEcCCC--------CCHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHH
Confidence 1234666665211 1245688888875 999987532 357899998 5677999999999999998864
No 147
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.94 E-value=7.1e-26 Score=228.52 Aligned_cols=336 Identities=15% Similarity=0.109 Sum_probs=197.8
Q ss_pred cEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc------ccccccCChHHHHHHHHHHhhCCCCCCEEEEe
Q 011777 88 QYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ------HATTIYLHHAIADFAEALASKMPGNLKVVYFV 161 (477)
Q Consensus 88 ~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~------~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~ 161 (477)
.+.++.++..|||+.++. ..+|+|++++.+++.+.. +....+..+...+++++|+++++.+.++++++
T Consensus 13 ~~~~~~~~~iyld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~ 86 (400)
T 3vax_A 13 GLVPRGSHMTYLDAAATT------RVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDELIFT 86 (400)
T ss_dssp ---------CCCCCCCCS------SSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred CCCcccCCcEEecCCCCC------CCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEe
Confidence 345677888999987643 468999999999987531 11112234557899999999998777789999
Q ss_pred CChHHHHHHHHHHHHhc--cCCc-eEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHH
Q 011777 162 NSGTEANELAMLMARLS--TGNL-GMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQ 238 (477)
Q Consensus 162 ~sGseA~~~Al~~ar~~--~~~~-~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (477)
+||++|++.+++.+..+ .+++ .|++..+.|++.......... .|...+.+|......++ ++
T Consensus 87 ~g~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~----------~g~~~~~v~~~~~~~~d------~~ 150 (400)
T 3vax_A 87 SGATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAG----------RGFEVDFLTPGPSGRIS------VE 150 (400)
T ss_dssp SCHHHHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHT----------TTCEEEEECCCTTCCCC------HH
T ss_pred CCHHHHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHh----------cCCeEEEEccCCCCCcC------HH
Confidence 99999999999976421 2456 788888888765443332211 12222222221111112 47
Q ss_pred HHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceee
Q 011777 239 DLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVT 318 (477)
Q Consensus 239 ~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt 318 (477)
+|+++++ +++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ ++.. ..+..+. +|+++
T Consensus 151 ~l~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~-~~~~-----~~~~~~~-~d~~~ 215 (400)
T 3vax_A 151 GVMERLR----PDTLLVSLMHVNNETGVIQP----VAELAQQLRATPTYLHVDAAQG-YGKV-----PGDLTTP-IDMIS 215 (400)
T ss_dssp HHHTTCC----TTEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSCEEEEECTTT-TTTS-----GGGGGSC-CSEEE
T ss_pred HHHHhcC----CCceEEEEECCCCCceeeCc----HHHHHHHHHhcCCEEEEEhhhh-cCCC-----CcChhhc-CcEEE
Confidence 7777765 46899999999999998776 8999999999999999999997 3221 2233334 78776
Q ss_pred e--cccccCccceEEEE-eCHH-HH---Hhhcccc-------cccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHH
Q 011777 319 M--AKGIGNGLPLGAVV-TTPE-IA---NVMAQKI-------QFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGS 382 (477)
Q Consensus 319 ~--sK~lg~G~pig~v~-~~~~-~~---~~~~~~~-------~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~ 382 (477)
+ +|. .|+.++|+++ ++++ +. ..+.... .....+.++.++++..++++.+.+ ++..++.+++.+
T Consensus 216 ~s~~K~-~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~ 294 (400)
T 3vax_A 216 ISGHKI-GAPKGVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRS 294 (400)
T ss_dssp EETGGG-TSCSSCEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred EeHHHh-CCCCceEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5 594 4444688888 7762 11 1122211 112344577888888888886654 456667777777
Q ss_pred HHHHHHHHHHHhCCCceeeec----cceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC------------
Q 011777 383 HLLGRLRTLQERHDIIGDVRG----RGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH------------ 446 (477)
Q Consensus 383 ~l~~~L~~l~~~~~~~~~v~g----~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~------------ 446 (477)
++.+.|+ + +.+..... .+.++.+.+.. ....++.+.|. +||.+.++..+
T Consensus 295 ~l~~~L~-~----~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~ 359 (400)
T 3vax_A 295 RLLAGLA-S----TSFQVNGDQDHVVPHILNLSFED---------VDAEAFLVTLK-DLVAVATGSASTSASFTPSHVLR 359 (400)
T ss_dssp HHHHHHT-T----TTCEECSCTTSBCTTEEEEECTT---------CCHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHH
T ss_pred HHHHhhC-C----CCEEEeCCcccCCCCEEEEEeCC---------CCHHHHHHHHh-cCcEEEecccccCCCCCccHHHH
Confidence 7777665 2 22211111 23455555421 12456788888 99988775210
Q ss_pred ---------CCEEEEeC-CCCCcHHHHHHHHHHHHHHHhh
Q 011777 447 ---------GNVFRIKP-PMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 447 ---------~~~iRi~p-~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
.+++||++ +...+++|+++++++|++++++
T Consensus 360 ~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 360 AMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp TTTCCHHHHTSEEEEEEEEC--------------------
T ss_pred HcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence 38999999 8889999999999999998764
No 148
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.93 E-value=8.1e-25 Score=228.62 Aligned_cols=324 Identities=13% Similarity=0.043 Sum_probs=208.7
Q ss_pred CCCHHHHHHHHHHHhhcccccc--ccC----ChHHHHHHHHHHhhCCCCC--CEE--EEeCChHHHHHHHHHHHHhccC-
Q 011777 112 HCHPDVLNAIFEQSKLLQHATT--IYL----HHAIADFAEALASKMPGNL--KVV--YFVNSGTEANELAMLMARLSTG- 180 (477)
Q Consensus 112 h~~p~v~~Av~~~l~~~~~~~~--~~~----~~~~~~l~~~La~~~~~~~--~~v--~~~~sGseA~~~Al~~ar~~~~- 180 (477)
|+++.+.+++.+++........ ... .....+++++++++++.+. +.+ +|++||++|++.+++.++...+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~ 186 (514)
T 3mad_A 107 HGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARA 186 (514)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhh
Confidence 4568888888887764322111 111 2334567788899886543 466 9999999999999999876542
Q ss_pred -----CceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEE
Q 011777 181 -----NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGF 255 (477)
Q Consensus 181 -----~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~v 255 (477)
++.|++..++|+++...+...+. .+..++... ....+ +++|+++++ +++++|
T Consensus 187 ~~g~~~d~Vi~~~~~~~~~~~~~~~~G~-----------~v~~v~~~~--~~~~d------~~~Le~~i~----~~~~~v 243 (514)
T 3mad_A 187 TKGITAPEAVVPVSAHAAFDKAAQYFGI-----------KLVRTPLDA--DYRAD------VAAMREAIT----PNTVVV 243 (514)
T ss_dssp HHCCSSCEEEEETTSCTHHHHHHHHHTC-----------EEEEECBCT--TSCBC------HHHHHHHCC----TTEEEE
T ss_pred hcCCCCCeEEEeCccchHHHHHHHHcCC-----------eeEEeeeCC--CCCCC------HHHHHHHhc----cCCEEE
Confidence 27899999998875444333211 122332211 11112 578888876 468899
Q ss_pred EecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCc-----cCCCC--CCccccccCCCcceeeecccccCccc
Q 011777 256 IAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGF-----GRTGS--HYWGFETQGVIPDIVTMAKGIGNGLP 328 (477)
Q Consensus 256 i~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gf-----gr~G~--~~~~~~~~gv~pDivt~sK~lg~G~p 328 (477)
++++.++++|.+.+ +++|.++|++||++||+||+|++| ++.|. ..+.....++...+.+++|.+.+|.+
T Consensus 244 ~~~~~~nptG~~~~----l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~ 319 (514)
T 3mad_A 244 AGSAPGYPHGVVDP----IPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKG 319 (514)
T ss_dssp EEETTCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSS
T ss_pred EEeCCCCCCccccC----HHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCC
Confidence 99999999998766 899999999999999999999987 33441 13334455654444456799888899
Q ss_pred eEEEEeCHHHHHhhcccc--------------cccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHh
Q 011777 329 LGAVVTTPEIANVMAQKI--------------QFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQER 394 (477)
Q Consensus 329 ig~v~~~~~~~~~~~~~~--------------~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~ 394 (477)
+|+++++++......... .++.+..+.+++.+++..+....-+++.++..++.+++.+.|+++
T Consensus 320 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~--- 396 (514)
T 3mad_A 320 TSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAI--- 396 (514)
T ss_dssp CEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---
T ss_pred eEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhC---
Confidence 999999877654432110 111111223344444444332222456777777888888777653
Q ss_pred CCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCC-CCCcHHHHHHHHHHHHHH
Q 011777 395 HDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPP-MCFTKDDADFLVDALDYS 473 (477)
Q Consensus 395 ~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~-~~~t~e~i~~~l~~l~~~ 473 (477)
+.+..+.....++++.... ....++.+.|.++||++ ++..+++.+|++++ ...++++|++++++|+++
T Consensus 397 -~g~~~~~~~~~~~~~~~~~---------~~~~~l~~~L~~~Gi~v-~g~~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~ 465 (514)
T 3mad_A 397 -PSLKILGDPLWVIAVASDE---------LNIYQVMEEMAGRGWRL-NGLHRPPAFHVALTLRHTEPGVVDRFLADLQDA 465 (514)
T ss_dssp -TTCEESSCCSSEEEEECSS---------SCHHHHHHHHHTTTCBC-EEETTTTEEEEECCGGGGSTTHHHHHHHHHHHH
T ss_pred -CCeEEeCCCeEEEEEeCCC---------CCHHHHHHHHHhcCCEe-ccCCCCCeEEEEEecCCCCHHHHHHHHHHHHHH
Confidence 2222222223355554311 11457889999999988 44344678999987 445679999999999998
Q ss_pred Hhh
Q 011777 474 MSK 476 (477)
Q Consensus 474 l~~ 476 (477)
+++
T Consensus 466 l~~ 468 (514)
T 3mad_A 466 VAQ 468 (514)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 149
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.93 E-value=9e-25 Score=218.81 Aligned_cols=327 Identities=13% Similarity=0.094 Sum_probs=215.9
Q ss_pred EEEeecCCcccccCCCCCHHHHHHHHHHHhhcc-cccccc-----CChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHH
Q 011777 97 RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ-HATTIY-----LHHAIADFAEALASKMPGNLKVVYFVNSGTEANEL 170 (477)
Q Consensus 97 ~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~-~~~~~~-----~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~ 170 (477)
.|||+.++ |+.+|+|++++.+++.... +....| ..+...+++++++++++.+.+++++++||++|++.
T Consensus 2 ~yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~ 75 (382)
T 4eb5_A 2 AYFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNL 75 (382)
T ss_dssp CBCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHH
T ss_pred eeeccCCC------CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHH
Confidence 37887664 4689999999999987531 111112 13457889999999987766799999999999999
Q ss_pred HHHHHHhc--cCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777 171 AMLMARLS--TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT 248 (477)
Q Consensus 171 Al~~ar~~--~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~ 248 (477)
+++.+... .+++.|++.+++|++.......+.. .|...+.++.......+ +++|++.++
T Consensus 76 ~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~----------~g~~~~~v~~~~~~~~d------~~~l~~~i~--- 136 (382)
T 4eb5_A 76 AIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQK----------QGFEVEYIPVGKYGEVD------VSFIDQKLR--- 136 (382)
T ss_dssp HHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTT----------TTCEEEEECBCTTSCBC------HHHHHHHCC---
T ss_pred HHHHHHhhccCCCCEEEECCCcchHHHHHHHHHHh----------CCcEEEEeccCCCCccC------HHHHHHHhc---
Confidence 99987611 3567899999999876544332110 12222222211111111 477888775
Q ss_pred CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCccee--eecccccCc
Q 011777 249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGNG 326 (477)
Q Consensus 249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~G 326 (477)
+++++|+++.+++++|.+.+ +++|.++|++||++ |+||+|+ +|.. .+....+ .+|++ +++|.+|.
T Consensus 137 -~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~-i~D~a~~-~g~~---~~~~~~~--~~di~~~s~sK~~g~- 203 (382)
T 4eb5_A 137 -DDTILVSVQHANNEIGTIQP----VEEISEVLAGKAAL-HIDATAS-VGQI---EVDVEKI--GADMLTISSNDIYGP- 203 (382)
T ss_dssp -TTEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSEE-EEECTTT-BTTB---CCCHHHH--TCSEEEEETGGGTCC-
T ss_pred -CCCeEEEEeccCCCccccCC----HHHHHHHHHHCCCE-EEEcchh-cCCc---ccCcccc--CCCEEEeehHHhcCC-
Confidence 36789999999999998776 89999999999999 9999997 5432 2222222 35666 46797542
Q ss_pred cceEEEEeCHHHHHhhcccc-------cccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHhCCC
Q 011777 327 LPLGAVVTTPEIANVMAQKI-------QFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQERHDI 397 (477)
Q Consensus 327 ~pig~v~~~~~~~~~~~~~~-------~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~ 397 (477)
.++|+++++++. .+.... ....++.++..++++.++++.+.+ ++..++++++.+++.+.|++ .+.
T Consensus 204 ~g~G~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~ 277 (382)
T 4eb5_A 204 KGVGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLK----IEE 277 (382)
T ss_dssp SSCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----STT
T ss_pred CceEEEEEcccc--ccCceecCCCccccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh----CCC
Confidence 237999988763 122211 112334567777777788876644 34455566666666666544 322
Q ss_pred ceeeec----cceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC---------------------CCCEEEE
Q 011777 398 IGDVRG----RGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL---------------------HGNVFRI 452 (477)
Q Consensus 398 ~~~v~g----~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------------~~~~iRi 452 (477)
+..... .+.++++.+.. ....++.+.|.++||.+.++.. ..+++||
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi 348 (382)
T 4eb5_A 278 SYLNGHPEKRLPNNVNVRFSY---------IEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLL 348 (382)
T ss_dssp EEECSCSSSBCTTEEEEEETT---------SCHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEE
T ss_pred eEEeCCcccCCCCEEEEEeCC---------cCHHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEE
Confidence 221211 25566776621 0135688888899999987631 1478999
Q ss_pred eCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 453 KPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 453 ~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
+++..++++|+++++++|++++++
T Consensus 349 ~~~~~~~~~~i~~~~~~l~~~~~~ 372 (382)
T 4eb5_A 349 TLGRYNTDEDVDRLLEVLPGVIER 372 (382)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHH
Confidence 988888999999999999998764
No 150
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.93 E-value=2.2e-25 Score=229.99 Aligned_cols=345 Identities=13% Similarity=0.074 Sum_probs=231.5
Q ss_pred CCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccc----c-c--cCChHHHHHHHHHHhhCCCCCCEEEEeCChH
Q 011777 93 ENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHAT----T-I--YLHHAIADFAEALASKMPGNLKVVYFVNSGT 165 (477)
Q Consensus 93 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~----~-~--~~~~~~~~l~~~La~~~~~~~~~v~~~~sGs 165 (477)
.++..|+|.. ++|+.++.+.+++.++++...... . . ...+...+++++++++++.+.++|+|++|++
T Consensus 65 ~~~~iyld~~------~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t 138 (465)
T 3e9k_A 65 DENAIYFLGN------SLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALT 138 (465)
T ss_dssp TCBCEECBTT------TSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCHH
T ss_pred CCCeEEecCC------ccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCHH
Confidence 3466788743 467778889888888876532111 0 0 1124456789999999887778999999999
Q ss_pred HHHHHHHHHHHhc-cCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHH
Q 011777 166 EANELAMLMARLS-TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHI 244 (477)
Q Consensus 166 eA~~~Al~~ar~~-~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i 244 (477)
+++..+++.+... .++++||+..++||+................. ...+... |......++ .++++++|
T Consensus 139 ~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~--~~~v~~~--~~~~~~~~d------~~~l~~~i 208 (465)
T 3e9k_A 139 VNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIE--ESMRMIK--PREGEETLR------IEDILEVI 208 (465)
T ss_dssp HHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHH--HHEEEEC--CCTTCSSCC------HHHHHHHH
T ss_pred HHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcce--eeeEEEe--cCCCCCccC------HHHHHHHH
Confidence 9999999876432 24567999999999865433221110000000 0001111 111111122 57888888
Q ss_pred hccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCccee--eeccc
Q 011777 245 DFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKG 322 (477)
Q Consensus 245 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~ 322 (477)
+.. .+++++|+++++++++|.+.+ +++|.++|++||+++|+|++|+ +|. ..+..+.++ .|++ +++|.
T Consensus 209 ~~~-~~~~~lv~~~~~~n~tG~~~~----l~~i~~la~~~g~~vi~D~a~~-~g~---~~~~~~~~~--~D~~~~s~~K~ 277 (465)
T 3e9k_A 209 EKE-GDSIAVILFSGVHFYTGQHFN----IPAITKAGQAKGCYVGFDLAHA-VGN---VELYLHDWG--VDFACWCSYKY 277 (465)
T ss_dssp HHH-GGGEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTT---SCCCHHHHT--CCEEEECSSST
T ss_pred Hhc-CCCeEEEEEeCcccCcceeec----HHHHHHHHHHcCCEEEEEhhhh-cCC---cCCchhhcC--CCEEEECcccc
Confidence 632 147899999999999998877 8999999999999999999997 322 222233334 4555 56699
Q ss_pred ccCc-cceEEEEeCHHHHHhhcccccc---c----------------------CCCCcHHHHHHHHHHHHhhch---hhH
Q 011777 323 IGNG-LPLGAVVTTPEIANVMAQKIQF---N----------------------TFGGNPVCSAGGLAVLRVIDK---ERR 373 (477)
Q Consensus 323 lg~G-~pig~v~~~~~~~~~~~~~~~~---~----------------------t~~~~~~~~aaa~a~l~~l~~---~~~ 373 (477)
+++| .++|++++++++.+.+.....+ + ..+.|++++++..++++.+++ +++
T Consensus 278 l~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~ 357 (465)
T 3e9k_A 278 LNAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKAL 357 (465)
T ss_dssp TCCCTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred cccCCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHH
Confidence 9654 5789999999987666532211 1 014577888888888887754 567
Q ss_pred HHHHHHHHHHHHHHHHHHHH---------hCCCce--eeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeec
Q 011777 374 QAHCADVGSHLLGRLRTLQE---------RHDIIG--DVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGK 442 (477)
Q Consensus 374 ~~~~~~~~~~l~~~L~~l~~---------~~~~~~--~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~ 442 (477)
.++..++.+++.+.|+++.. ...++. +.+..|.++++.+..+ ..++.+.|.++||++..
T Consensus 358 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~~----------~~~l~~~L~~~Gi~v~~ 427 (465)
T 3e9k_A 358 RKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSVP----------NKDVFQELEKRGVVCDK 427 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECCT----------TCCHHHHHHTTTEECEE
T ss_pred HHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecCC----------HHHHHHHHHHCCEEEec
Confidence 77888888888888877521 111111 2233588888877411 23578889999999875
Q ss_pred cCCCCCEEEEeC-CCCCcHHHHHHHHHHHHHHHhh
Q 011777 443 GGLHGNVFRIKP-PMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 443 ~~~~~~~iRi~p-~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
.. .+++||+| ++.+|++||+++++.|++++++
T Consensus 428 ~~--~~~iRis~~~~~~t~edi~~~~~~l~~~l~~ 460 (465)
T 3e9k_A 428 RN--PNGIRVAPVPLYNSFHDVYKFTNLLTSILDS 460 (465)
T ss_dssp ET--TTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC
T ss_pred CC--CCEEEEeCcccCCCHHHHHHHHHHHHHHHHh
Confidence 43 58999999 8999999999999999998864
No 151
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.93 E-value=7.7e-25 Score=221.31 Aligned_cols=315 Identities=11% Similarity=0.012 Sum_probs=208.6
Q ss_pred CCHHHHHHHHHHHhh-ccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCc
Q 011777 113 CHPDVLNAIFEQSKL-LQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAY 191 (477)
Q Consensus 113 ~~p~v~~Av~~~l~~-~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~y 191 (477)
..+++.+++..+... ..+....+.++...+++++++++++. +.+++++||++|++.+++.+. .+++.|++.+++|
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~--~~~i~~~sG~~a~~~~l~~~~--~~gd~vi~~~~~~ 113 (398)
T 2rfv_A 38 VFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERG--EAGLATASGISAITTTLLTLC--QQGDHIVSASAIY 113 (398)
T ss_dssp CCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHC--CTTCEEEEESSSC
T ss_pred ccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHh--CCCCEEEEcCCCc
Confidence 456666666522221 22334455678899999999999865 377888899999999999763 3567899999999
Q ss_pred cCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCc
Q 011777 192 HGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAP 271 (477)
Q Consensus 192 hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~ 271 (477)
|+........... .|...+.++.. | ++++++.++ +++++|+++++++++|.+.+
T Consensus 114 ~~~~~~~~~~~~~---------~g~~~~~v~~~-------d----~~~l~~~i~----~~~~~v~~~~~~nptG~~~~-- 167 (398)
T 2rfv_A 114 GCTHAFLSHSMPK---------FGINVRFVDAA-------K----PEEIRAAMR----PETKVVYIETPANPTLSLVD-- 167 (398)
T ss_dssp HHHHHHHHTHHHH---------TTCEEEEECTT-------S----HHHHHHHCC----TTEEEEEEESSBTTTTBCCC--
T ss_pred ccHHHHHHHHHHH---------cCCEEEEeCCC-------C----HHHHHHhcC----CCCeEEEEECCCCCCCcccC--
Confidence 9865543111000 12222222211 1 577887775 47899999999999998776
Q ss_pred hhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccC-ccce-EEEEeCHHHHH-hhcccccc
Q 011777 272 GYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGN-GLPL-GAVVTTPEIAN-VMAQKIQF 348 (477)
Q Consensus 272 ~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~-G~pi-g~v~~~~~~~~-~~~~~~~~ 348 (477)
+++|.++|++||+++|+||+|+.+. .+ ... .++....+.+++|.+++ |+|+ |++++++++++ .+....+.
T Consensus 168 --l~~i~~l~~~~~~~li~De~~~~~~-~~-~~~---~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~ 240 (398)
T 2rfv_A 168 --IETVAGIAHQQGALLVVDNTFMSPY-CQ-QPL---QLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKD 240 (398)
T ss_dssp --HHHHHHHHHHTTCEEEEECTTTCTT-TC-CGG---GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHH
T ss_pred --HHHHHHHHHHcCCEEEEECCCcccc-cC-Cch---hhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHHh
Confidence 9999999999999999999998432 22 221 23444444678999986 7898 99999999876 55544343
Q ss_pred c-CCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHH----------HhCCCcee----eeccceeEEEEEe
Q 011777 349 N-TFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQ----------ERHDIIGD----VRGRGLMVGMELV 413 (477)
Q Consensus 349 ~-t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~----------~~~~~~~~----v~g~g~~~~i~~~ 413 (477)
. +.+.+++.++++.++++.+ +...++..++.+.+.+.|++.. ..++.+.. .++.|.++++++.
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~ 318 (398)
T 2rfv_A 241 ITGGCMSPFNAWLTLRGVKTL--GIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIA 318 (398)
T ss_dssp TTCCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEET
T ss_pred CCCCCCCHHHHHHHHhhhhhH--HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEc
Confidence 4 5678899999999988754 2334445555555655554420 01111111 1346888888873
Q ss_pred eCCCCCCccHHHHHHHHHHHHHcCceeeccCC-------------------------CCCEEEEeCCCCCcHHHHHHHHH
Q 011777 414 TDRKEKTPAKAETAVLFEKLRELGVLVGKGGL-------------------------HGNVFRIKPPMCFTKDDADFLVD 468 (477)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------------------------~~~~iRi~p~~~~t~e~i~~~l~ 468 (477)
. .......+.+.+...|+.+.+|+. ..+.+||+++...++++|+.+++
T Consensus 319 ~-------~~~~~~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~ 391 (398)
T 2rfv_A 319 G-------GLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEH 391 (398)
T ss_dssp T-------HHHHHHHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHH
T ss_pred C-------CHHHHHHHHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHH
Confidence 1 112234455555555776655521 14799999999999999999999
Q ss_pred HHHHH
Q 011777 469 ALDYS 473 (477)
Q Consensus 469 ~l~~~ 473 (477)
+|+++
T Consensus 392 al~~~ 396 (398)
T 2rfv_A 392 AIRKA 396 (398)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 98764
No 152
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.93 E-value=2.1e-24 Score=221.95 Aligned_cols=344 Identities=14% Similarity=0.081 Sum_probs=213.5
Q ss_pred CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHH
Q 011777 94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAML 173 (477)
Q Consensus 94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~ 173 (477)
.|+.||||.++.++.++ .+++.+++. ... ......+...+|+++|+++++. +.+++++||++|++.+++
T Consensus 40 ~~~~ylD~~~~~~~~~~---~~~~~~a~~----~~~--~~y~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~al~ 108 (456)
T 2ez2_A 40 SKDIYIDLLTDSGTNAM---SDKQWAGMM----MGD--EAYAGSENFYHLERTVQELFGF--KHIVPTHQGRGAENLLSQ 108 (456)
T ss_dssp GGGCSEECSCSSSCCCC---CHHHHHHHT----TCC--CCSSSCHHHHHHHHHHHHHHCC--SEEEEESSHHHHHHHHHH
T ss_pred cccceeeeccccCCccC---CHHHHHHhh----cch--hhcccChhHHHHHHHHHHHhCC--CcEEEeCCcHHHHHHHHH
Confidence 46789999887764422 567777664 111 1112356688999999999854 689999999999999998
Q ss_pred HHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCC---C-cCCC--CCCCHHHHHHHHHHHHhcc
Q 011777 174 MARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPD---P-YHGS--FGSDAARYAQDLQDHIDFG 247 (477)
Q Consensus 174 ~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~--~~~~~~~~~~~le~~i~~~ 247 (477)
.+. .+++ |+..++||+.+.......+... ..++... + ...+ ++.| .++|+++++..
T Consensus 109 ~l~--~~gd--i~~~~~~~~~~~~~~~~~G~~~----------~~v~~~~~~~~~~~~~~~~~~d----~~~l~~~i~~~ 170 (456)
T 2ez2_A 109 LAI--KPGQ--YVAGNMYFTTTRYHQEKNGAVF----------VDIVRDEAHDAGLNIAFKGDID----LKKLQKLIDEK 170 (456)
T ss_dssp HHC--CTTC--EEEESSCCHHHHHHHHHTTCEE----------EECBCGGGGCTTCCCSCTTCBC----HHHHHHHHHHH
T ss_pred HhC--CCCC--EeccccccchhHHHHHHcCCEE----------EEecccccccccccccccCCCC----HHHHHHHHHhc
Confidence 773 2333 7788899876544443332211 1111100 0 0001 1212 57888888632
Q ss_pred CCCCeeEEEec-ccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccC----------ccCCCCCCc-cc-cccCCCc
Q 011777 248 TSGKVAGFIAE-TIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTG----------FGRTGSHYW-GF-ETQGVIP 314 (477)
Q Consensus 248 ~~~~~a~vi~e-pi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g----------fgr~G~~~~-~~-~~~gv~p 314 (477)
....+++|+++ |+|+++| .+.+.+++++|.++|++||++||+||+|+. +.+.| ..+ .+ +..+..+
T Consensus 171 t~~~~~~v~l~~p~n~ptG-~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g-~~~~~~~~~~~~~~ 248 (456)
T 2ez2_A 171 GAENIAYICLAVTVNLAGG-QPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFEN-KSIAEIVHEMFSYA 248 (456)
T ss_dssp CGGGEEEEEEESSBTTTTS-BCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTT-SCHHHHHHHHHTTC
T ss_pred cccceeEEEEeccCCCCCC-ccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCC-cchhhhhhhhcccC
Confidence 22346888888 5555778 567899999999999999999999999985 44555 221 10 1123446
Q ss_pred ceeeec-ccccC-ccceEEEEe-CHHHHHhhccccc----ccCCC-CcHHHHHH-HHHHHHhhchhhHHHHHHHHHHHHH
Q 011777 315 DIVTMA-KGIGN-GLPLGAVVT-TPEIANVMAQKIQ----FNTFG-GNPVCSAG-GLAVLRVIDKERRQAHCADVGSHLL 385 (477)
Q Consensus 315 Divt~s-K~lg~-G~pig~v~~-~~~~~~~~~~~~~----~~t~~-~~~~~~aa-a~a~l~~l~~~~~~~~~~~~~~~l~ 385 (477)
|++++| |.+++ | +.|++++ ++++++.+..... ..++. .++..+++ +.+.++.++ +++.++.+++.++++
T Consensus 249 d~~~~S~kk~~~~~-~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~-~~~~~~~~~~~~~l~ 326 (456)
T 2ez2_A 249 DGCTMSGKKDCLVN-IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ-YEYIEHRVKQVRYLG 326 (456)
T ss_dssp SEEEEETTTTTCCS-SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHH
T ss_pred CEEEEeCcccCCCC-ceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhH-HHHHHHHHHHHHHHH
Confidence 888774 55554 4 5799998 6888776643211 11222 24334444 555555443 456677777788888
Q ss_pred HHHHHHHHhCCCceeeeccceeEEEEEee--CCCCCCccHHHHHHHHHHH-HHcCceeeccCC---------------CC
Q 011777 386 GRLRTLQERHDIIGDVRGRGLMVGMELVT--DRKEKTPAKAETAVLFEKL-RELGVLVGKGGL---------------HG 447 (477)
Q Consensus 386 ~~L~~l~~~~~~~~~v~g~g~~~~i~~~~--~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~---------------~~ 447 (477)
+.|+++ .++.+. +..|.++++.+.. +... ........+.+.| .++||.+.+.+. ..
T Consensus 327 ~~L~~~--g~~~~~--p~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~ 400 (456)
T 2ez2_A 327 DKLKAA--GVPIVE--PVGGHAVFLDARRFCEHLT--QDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKL 400 (456)
T ss_dssp HHHHHT--TCCBCS--SCCSSEEEEEHHHHTTTSC--GGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSC
T ss_pred HHHhcC--CCcccc--CCCceEEEEEhHHhcCCCC--hhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCC
Confidence 887763 232221 2346677776532 1100 1110134456666 678998654221 13
Q ss_pred CEEEEeCCCC-CcHHHHHHHHHHHHHHHhh
Q 011777 448 NVFRIKPPMC-FTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 448 ~~iRi~p~~~-~t~e~i~~~l~~l~~~l~~ 476 (477)
+++||+++.. ++++++++++++|++++++
T Consensus 401 ~~iRis~~~~~~t~e~i~~~~~~l~~~l~~ 430 (456)
T 2ez2_A 401 ETVRLTIPRRVYTYAHMDVVADGIIKLYQH 430 (456)
T ss_dssp CEEEEECCTTTCCHHHHHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 7899999987 8999999999999998764
No 153
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.93 E-value=6.5e-25 Score=224.03 Aligned_cols=346 Identities=16% Similarity=0.157 Sum_probs=209.1
Q ss_pred CCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc-cccccc-----CChHHHHHHHHHHhhCCCCCCEEEEeCChHH
Q 011777 93 ENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ-HATTIY-----LHHAIADFAEALASKMPGNLKVVYFVNSGTE 166 (477)
Q Consensus 93 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~-~~~~~~-----~~~~~~~l~~~La~~~~~~~~~v~~~~sGse 166 (477)
.+|..|||+.++. +.+|+|++++.+++.... +....| ..+...+++++|+++++.+.++|+|++||++
T Consensus 16 ~~~~~~Ld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~ 89 (432)
T 3a9z_A 16 PNRKVYMDYNATT------PLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTE 89 (432)
T ss_dssp --CCEECBTTTCC------CCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHH
T ss_pred CCCcEEeeCCccC------CCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHH
Confidence 3578899976543 579999999999987632 111112 1234578999999998776678999999999
Q ss_pred HHHHHHHHHHh-c-----cCCceEEEEccCccCCcccccccccCC-C---CCCCCCCCCeeeecCCCCc-CCCCCCCHHH
Q 011777 167 ANELAMLMARL-S-----TGNLGMIALRNAYHGGSSGTIGLTALN-T---WKYPIPQGEIHHVVNPDPY-HGSFGSDAAR 235 (477)
Q Consensus 167 A~~~Al~~ar~-~-----~~~~~ii~~~~~yhG~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 235 (477)
|++.+++.+.. + .++++|+++.++||++.....+..... . +.......|...+.+|... ...++
T Consensus 90 a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d----- 164 (432)
T 3a9z_A 90 SNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVE----- 164 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCC-----
T ss_pred HHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcC-----
Confidence 99999998741 1 256789999999998632221111000 0 0000000133333322211 11122
Q ss_pred HHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhC----------cEEEEcCcccCccCCCCCCc
Q 011777 236 YAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAG----------GVCIADEVQTGFGRTGSHYW 305 (477)
Q Consensus 236 ~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g----------illI~DEv~~gfgr~G~~~~ 305 (477)
+++|++.++ +++++|+++++++++|.+.+ +++|.++|++|| +++|+||+|. +|... +
T Consensus 165 -~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~~~~~~~livDea~~-~~~~~---~ 231 (432)
T 3a9z_A 165 -VEDILAAVR----PTTCLVTIMLANNETGVIMP----ISEISRRIKALNQIRAASGLPRVLVHTDAAQA-LGKRR---V 231 (432)
T ss_dssp -HHHHHHTCC----TTEEEEECCSBCTTTCBBCC----HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTT-TTTSC---C
T ss_pred -HHHHHHhcc----CCceEEEEECcccCcccccC----HHHHHHHHHhcCcccccccCCceEEEEEchhh-hCCcc---c
Confidence 477777765 46889999999999998877 789999999999 9999999995 54322 2
Q ss_pred cccccCCCcceee--ecccccCccceEEEEeCHHH-HHhhcccc-------cccCCCCcHHHHHHHHHHHHhhch--hhH
Q 011777 306 GFETQGVIPDIVT--MAKGIGNGLPLGAVVTTPEI-ANVMAQKI-------QFNTFGGNPVCSAGGLAVLRVIDK--ERR 373 (477)
Q Consensus 306 ~~~~~gv~pDivt--~sK~lg~G~pig~v~~~~~~-~~~~~~~~-------~~~t~~~~~~~~aaa~a~l~~l~~--~~~ 373 (477)
... ...+|+++ ++|.+ |+++|++++++++ ...+.... ...+++.|+.+++++.++++.+++ ++.
T Consensus 232 ~~~--~~~~d~~~~s~~K~~--g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~ 307 (432)
T 3a9z_A 232 DVE--DLGVDFLTIVGHKFY--GPRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETY 307 (432)
T ss_dssp CHH--HHCCSEEEEEGGGTT--CCSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred Chh--hcCCCEEEEehhHhc--CCcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHhhHHHH
Confidence 222 22467664 58976 4679999999875 33333221 122356788888888888887654 566
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCc--ee---eeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeecc-----
Q 011777 374 QAHCADVGSHLLGRLRTLQERHDII--GD---VRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKG----- 443 (477)
Q Consensus 374 ~~~~~~~~~~l~~~L~~l~~~~~~~--~~---v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----- 443 (477)
.++++++.+++.+.|+++.. ..+. .. .+..+.+..+.+.... .. ...+.+.+ +|+++..+
T Consensus 308 ~~~~~~~~~~l~~~L~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~l--~~i~~~~G~~~~~ 377 (432)
T 3a9z_A 308 EAHMRDIRDYLEERLEAEFG-KRIHLNSRFPGVERLPNTCNFSIQGSQ----LR---GYMVLAQC--QTLLASVGASCHS 377 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHG-GGEEESSCCTTCCBCTTEEEEEECSTT----CC---HHHHHHHC--SSEECBSSCGGGG
T ss_pred HHHHHHHHHHHHHHHHhccC-CcEEEeCCCCcccCCCCEEEEEeCCCC----Cc---HHHHHHHh--cCeEEeccccccC
Confidence 77888888888888877521 1110 10 1234556677764311 11 12333333 24433322
Q ss_pred -------------CC----CCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 444 -------------GL----HGNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 444 -------------~~----~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
+. ..+++||+++..+|++|+++++++|++++++
T Consensus 378 ~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~ 427 (432)
T 3a9z_A 378 DHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQ 427 (432)
T ss_dssp GGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 10 1378999999888999999999999998764
No 154
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.93 E-value=5.5e-25 Score=225.91 Aligned_cols=339 Identities=13% Similarity=0.096 Sum_probs=203.2
Q ss_pred EEeecCCcccccCCCCCHHHHHHHHHHHhhcc----ccccccCC-hHHHHHHHHHHhhC-CCC-----CCEEEE--eCCh
Q 011777 98 YLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ----HATTIYLH-HAIADFAEALASKM-PGN-----LKVVYF--VNSG 164 (477)
Q Consensus 98 ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~----~~~~~~~~-~~~~~l~~~La~~~-~~~-----~~~v~~--~~sG 164 (477)
.+||..|.+.- .+++|.+.+++.+++.+.. .....|.. ....++++.+++++ +.+ .++|++ |+||
T Consensus 51 ~i~l~~g~~~d--~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~gg 128 (448)
T 3meb_A 51 KVNLGVGAYRD--ESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSG 128 (448)
T ss_dssp CEEESSCCCCC--TTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHH
T ss_pred eEEeecccccC--CCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhcCCCccccCcCcEEEEECCcH
Confidence 46666655421 1234444445444422211 11222322 33456666666665 433 468999 9999
Q ss_pred HHHHHHHHHHHHhccCCceEEEEccCccCCccccc----ccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHH
Q 011777 165 TEANELAMLMARLSTGNLGMIALRNAYHGGSSGTI----GLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDL 240 (477)
Q Consensus 165 seA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 240 (477)
++|++.++.+.....+++.|++.+++|+++..... ..+. .+..++..+.. ..+.-| ++++
T Consensus 129 t~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~-----------~v~~~~~~~~~-~~~~~d----~e~l 192 (448)
T 3meb_A 129 TGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKV-----------PYKEYTYLRKD-GELEID----FSNT 192 (448)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTS-----------CCEEECCBCTT-SCSSBC----HHHH
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCC-----------eEEEEeccccc-cCCCcC----HHHH
Confidence 99999976655445567899999999987755443 2211 11122211110 011112 5788
Q ss_pred HHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCC--CCcccccc-CCCcc--
Q 011777 241 QDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS--HYWGFETQ-GVIPD-- 315 (477)
Q Consensus 241 e~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~--~~~~~~~~-gv~pD-- 315 (477)
++.++.. +.+++++++...+|++| ..++.+.+++|.++|++||+++|+||+|.+|++.+. ..+++..+ +..++
T Consensus 193 ~~~l~~~-~~~~~~v~~~~p~NPtG-~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (448)
T 3meb_A 193 KKDIQSA-PEKSIFLFHACAHNPSG-IDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVL 270 (448)
T ss_dssp HHHHHHS-CTTCEEEEESSSCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEE
T ss_pred HHHHHhC-CCCcEEEEeCCCCCCCC-cCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEE
Confidence 8888642 23455655555566777 456888899999999999999999999999987541 12222221 22334
Q ss_pred -eeeeccccc-CccceEEE--Ee--------C-H----HHHHhhcccccccCCCCcHHHHHHHHHHHHhhc--------h
Q 011777 316 -IVTMAKGIG-NGLPLGAV--VT--------T-P----EIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID--------K 370 (477)
Q Consensus 316 -ivt~sK~lg-~G~pig~v--~~--------~-~----~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~--------~ 370 (477)
+.+|||.+| .|+|+||+ ++ + + ++++.+.......+.+.+.+++.++.++|+..+ -
T Consensus 271 ~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~ 350 (448)
T 3meb_A 271 VAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNV 350 (448)
T ss_dssp EEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred EEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHhcChHHHHHHHHHH
Confidence 457999999 59999998 66 4 4 566655544445566777888888888876421 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCC------ceee-eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeecc
Q 011777 371 ERRQAHCADVGSHLLGRLRTLQERHDI------IGDV-RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKG 443 (477)
Q Consensus 371 ~~~~~~~~~~~~~l~~~L~~l~~~~~~------~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~ 443 (477)
++..++++++++++.+.|+++. .+. +... +..|++.++.+. ...+...+.++||++.+|
T Consensus 351 ~~~~~~~~~~r~~l~~~L~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~ll~~~gV~v~~G 416 (448)
T 3meb_A 351 KEMSARIHRMRSLLHASLAKRK--TPGPGSKGTWDHILTAIGMFTFTGLT------------PEHVDYLKEKWSIYLVKA 416 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT--CCCSTTTCCCTHHHHCCSSEEECCCC------------HHHHHHHHHHHCEEECSG
T ss_pred HHHHHHHHHHHHHHHHHHHhhC--CCCcCcccccceeCCCceEEEecCCC------------HHHHHHHHHhCCEEEeCC
Confidence 2344555556666666655431 121 2122 233455554331 122333446679999986
Q ss_pred CCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 444 GLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 444 ~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
. .||+.. .+++++|++++++|++++++
T Consensus 417 ~-----gRis~a-~~~~~~i~~~~~~l~~~l~~ 443 (448)
T 3meb_A 417 G-----GRMSMC-GLTESNCDYVAEAIHDAVTK 443 (448)
T ss_dssp G-----GEEEGG-GCCTTTHHHHHHHHHHHHHH
T ss_pred C-----cEEEEe-cCCHHHHHHHHHHHHHHHHh
Confidence 3 288764 34778899999999999865
No 155
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.93 E-value=2.1e-24 Score=218.18 Aligned_cols=321 Identities=16% Similarity=0.075 Sum_probs=214.3
Q ss_pred CEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHH
Q 011777 96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMA 175 (477)
Q Consensus 96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~a 175 (477)
+.||||..+... ++ |++++++.++++...+ +..+...++++.|+++++. +.+++++||++|++.+++.+
T Consensus 30 ~~~id~~~~~~~--~~---~~v~~a~~~~~~~~~y----~~~~~~~~l~~~la~~~~~--~~~v~~~~Gt~a~~~~l~~~ 98 (399)
T 2oga_A 30 VPFLDLKAAYEE--LR---AETDAAIARVLDSGRY----LLGPELEGFEAEFAAYCET--DHAVGVNSGMDALQLALRGL 98 (399)
T ss_dssp BCSCCHHHHHHH--TH---HHHHHHHHHHHHHTCC----SSSHHHHHHHHHHHHHTTS--SEEEEESCHHHHHHHHHHHT
T ss_pred CcccccCcCCCC--CC---HHHHHHHHHHHhcCCC----CCchhHHHHHHHHHHHHCC--CeEEEecCHHHHHHHHHHHh
Confidence 679999887764 22 8999999998876322 2346688999999999965 47889999999999999876
Q ss_pred HhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEE
Q 011777 176 RLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGF 255 (477)
Q Consensus 176 r~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~v 255 (477)
+ ..+++.|++..++||+........ |...+.++... ..+..| ++++++.++ .++++|
T Consensus 99 ~-~~~gd~vl~~~~~~~~~~~~~~~~-------------g~~~~~~~~~~-~~~~~d----~~~l~~~i~----~~~~~v 155 (399)
T 2oga_A 99 G-IGPGDEVIVPSHTYIASWLAVSAT-------------GATPVPVEPHE-DHPTLD----PLLVEKAIT----PRTRAL 155 (399)
T ss_dssp T-CCTTCEEEEESSSCTHHHHHHHHT-------------TCEEEEECBCS-SSSSBC----HHHHHHHCC----TTEEEE
T ss_pred C-CCCcCEEEECCCccHHHHHHHHHC-------------CCEEEEEecCC-CCCCcC----HHHHHHhcC----CCCeEE
Confidence 3 235678999999999854433221 11222211110 011112 477888775 367777
Q ss_pred EecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCcc-CCCCCCccccccCCCcceeee----cccccC-ccce
Q 011777 256 IAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFG-RTGSHYWGFETQGVIPDIVTM----AKGIGN-GLPL 329 (477)
Q Consensus 256 i~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfg-r~G~~~~~~~~~gv~pDivt~----sK~lg~-G~pi 329 (477)
+++ +++|.+.+ +++|.++|++||+++|+||+|+.+. ..+ ...+..+|++++ ||.+++ | +.
T Consensus 156 ~~~---n~tG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~------~~~~~~~di~~~S~~~sK~~~~~G-~~ 221 (399)
T 2oga_A 156 LPV---HLYGHPAD----MDALRELADRHGLHIVEDAAQAHGARYRG------RRIGAGSSVAAFSFYPGKNLGCFG-DG 221 (399)
T ss_dssp CCB---CGGGCCCC----HHHHHHHHHHHTCEECEECTTCTTCEETT------EETTCTTCEEEEECCTTSSSCCSS-CC
T ss_pred EEe---CCcCCccC----HHHHHHHHHHcCCEEEEECcccccCccCC------eecccccCEEEEeCCCCccCCcCC-ce
Confidence 754 34565554 8999999999999999999997331 223 122334688876 499997 8 89
Q ss_pred EEEEeC-HHHHHhhccccc------------ccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCC
Q 011777 330 GAVVTT-PEIANVMAQKIQ------------FNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHD 396 (477)
Q Consensus 330 g~v~~~-~~~~~~~~~~~~------------~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~ 396 (477)
|+++++ +++++.+..... +.++..+++.++++.++++.++ ++.++.+++.+++.+.|.++. ...
T Consensus 222 g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~~-g~~ 298 (399)
T 2oga_A 222 GAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLD--SWNGRRSALAAEYLSGLAGLP-GIG 298 (399)
T ss_dssp EEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHTTTCT-TCB
T ss_pred EEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCC-Ccc
Confidence 999986 888776643211 2234568999999888887653 355666666666666665431 111
Q ss_pred CceeeeccceeE--EEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC-------------------------CCE
Q 011777 397 IIGDVRGRGLMV--GMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH-------------------------GNV 449 (477)
Q Consensus 397 ~~~~v~g~g~~~--~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-------------------------~~~ 449 (477)
.. .....+..+ .+.+... ...++.+.|.++||.+.++... .++
T Consensus 299 ~~-~~~~~~~~~~~~~~~~~~---------~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 368 (399)
T 2oga_A 299 LP-VTAPDTDPVWHLFTVRTE---------RRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQV 368 (399)
T ss_dssp CC-CCCTTEECCCSSEEEECS---------SHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHE
T ss_pred cc-CCCCCCcceeEEEEEECC---------CHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCE
Confidence 11 111122222 2333211 1457888999999999764210 257
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777 450 FRIKPPMCFTKDDADFLVDALDYSMSKL 477 (477)
Q Consensus 450 iRi~p~~~~t~e~i~~~l~~l~~~l~~l 477 (477)
+||+++..+|++|+++++++|+++++++
T Consensus 369 lRi~~~~~~t~edi~~~~~~l~~~~~~l 396 (399)
T 2oga_A 369 LSLPIGPHLERPQALRVIDAVREWAERV 396 (399)
T ss_dssp EEECCSTTCCHHHHHHHHHHHHHHHHSC
T ss_pred EEccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988753
No 156
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.93 E-value=8.8e-24 Score=212.63 Aligned_cols=296 Identities=18% Similarity=0.126 Sum_probs=201.3
Q ss_pred ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777 130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY 209 (477)
Q Consensus 130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~ 209 (477)
|....+.++...+++++|+++++.+ ..++++||++|++.+++.+. .++++|++..++||+..........
T Consensus 44 ~~~~~~~~~~~~~l~~~la~~~~~~--~~i~~~sGt~a~~~~~~~~~--~~g~~vl~~~~~~~~~~~~~~~~~~------ 113 (386)
T 1cs1_A 44 HDYSRRGNPTRDVVQRALAELEGGA--GAVLTNTGMSAIHLVTTVFL--KPGDLLVAPHDCYGGSYRLFDSLAK------ 113 (386)
T ss_dssp CSBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC--CTTCEEEEETTCCHHHHHHHHHHHT------
T ss_pred cceeCCCCccHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHHh--CCCCEEEEecCCcHhHHHHHHHHHH------
Confidence 3344567788889999999998764 44555778999999999763 3667899999999974332111100
Q ss_pred CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777 210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI 289 (477)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI 289 (477)
..+.....++. + | .+++++.++ +++++|++++++|++|.+.+ +++|.++|++||+++|
T Consensus 114 ---~~g~~~~~~~~------~-d----~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li 171 (386)
T 1cs1_A 114 ---RGCYRVLFVDQ------G-D----EQALRAALA----EKPKLVLVESPSNPLLRVVD----IAKICHLAREVGAVSV 171 (386)
T ss_dssp ---TTSCEEEEECT------T-C----HHHHHHHHH----TCCSEEEEECSCTTTCCCCC----HHHHHHHHHHTTCEEE
T ss_pred ---hcCCEEEEeCC------C-C----HHHHHHhhc----cCCcEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEE
Confidence 01222222221 1 1 578888887 36789999999999998776 9999999999999999
Q ss_pred EcCcccCccCCCCCCccccccCCCcceeeecccccC-ccce-EEEEeCH-HHHHhhcccccccCCCCcHHHHHHHHHHHH
Q 011777 290 ADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGN-GLPL-GAVVTTP-EIANVMAQKIQFNTFGGNPVCSAGGLAVLR 366 (477)
Q Consensus 290 ~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~-G~pi-g~v~~~~-~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~ 366 (477)
+||+|+++.... . . .++....+.+++|.+++ |.++ |++++++ ++++.+....+..+.+.|+++++++.++++
T Consensus 172 ~De~~~~~~~~~--~--~-~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 246 (386)
T 1cs1_A 172 VDNTFLSPALQN--P--L-ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLR 246 (386)
T ss_dssp EECTTTCTTTCC--G--G-GGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHT
T ss_pred EECCCcccccCC--c--c-ccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhccc
Confidence 999999775432 1 1 23433344478999986 5676 9999986 788877665554556678998888877776
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHHHH---h-CCCce----------eeeccceeEEEEEeeCCCCCCccHHHHHHHHHH
Q 011777 367 VIDKERRQAHCADVGSHLLGRLRTLQE---R-HDIIG----------DVRGRGLMVGMELVTDRKEKTPAKAETAVLFEK 432 (477)
Q Consensus 367 ~l~~~~~~~~~~~~~~~l~~~L~~l~~---~-~~~~~----------~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~ 432 (477)
.+ +...++..++.+++.+.|+++.. . ++.+. ..++.|.++.+++... ...+.+.
T Consensus 247 ~~--~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 314 (386)
T 1cs1_A 247 TL--VPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD----------EQTLRRF 314 (386)
T ss_dssp TH--HHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC----------HHHHHHH
T ss_pred HH--HHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC----------HHHHHHH
Confidence 43 22344555555555555544210 0 11111 1245688888887321 2456778
Q ss_pred HHHcCceeecc--C--------------------------CCCCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777 433 LRELGVLVGKG--G--------------------------LHGNVFRIKPPMCFTKDDADFLVDALDYSM 474 (477)
Q Consensus 433 l~~~Gv~v~~~--~--------------------------~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l 474 (477)
|.++||++... + ...+++||++++..++++++.+.+.|+++.
T Consensus 315 l~~~gi~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~~ 384 (386)
T 1cs1_A 315 LGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAAN 384 (386)
T ss_dssp HHTCSSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHT
T ss_pred HHhCCcceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 88899988631 1 124799999999999999999988888764
No 157
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.92 E-value=8e-24 Score=213.82 Aligned_cols=333 Identities=12% Similarity=0.080 Sum_probs=210.7
Q ss_pred CEEEeecCCcccccCCCCCHHHHHHHHHHHh-hccc--cccc-cC-ChHHHH----HHHHHHhhCCCCCCEEEEeCChHH
Q 011777 96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSK-LLQH--ATTI-YL-HHAIAD----FAEALASKMPGNLKVVYFVNSGTE 166 (477)
Q Consensus 96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~-~~~~--~~~~-~~-~~~~~~----l~~~La~~~~~~~~~v~~~~sGse 166 (477)
+.++|+.++.. + +|+|++|+.+++. ...+ .... +. .+...+ ++++++++++.+ ...++++||++
T Consensus 24 ~~~~~~~~~~~---~---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~-~~~i~~~sGt~ 96 (405)
T 2vi8_A 24 AKIELIASENF---V---SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAE-HANVQPHSGAQ 96 (405)
T ss_dssp HSEECCTTCCC---C---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS-EEECCCSSHHH
T ss_pred cceeeccCccc---C---CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCC-ceEEEecCcHH
Confidence 34677755432 2 8999999999885 3211 1111 11 233334 446899988664 33455678899
Q ss_pred HHHHHHHHHHhccCCceEEEEccCccCCcccc--cccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHH
Q 011777 167 ANELAMLMARLSTGNLGMIALRNAYHGGSSGT--IGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHI 244 (477)
Q Consensus 167 A~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i 244 (477)
|++.+++.+. .+++.|++..++|++..... ....+. ++..+.++... ..+..| ++++++.+
T Consensus 97 a~~~a~~~~~--~~gd~Vl~~~~~~~~~~~~~~~~~~~g~----------~~~~~~~~~~~-~~~~~d----~~~l~~~i 159 (405)
T 2vi8_A 97 ANMAVYFTVL--EHGDTVLGMNLSHGGHLTHGSPVNFSGV----------QYNFVAYGVDP-ETHVID----YDDVREKA 159 (405)
T ss_dssp HHHHHHHHHC--CTTCEEEEECGGGTCCTTTTCTTSHHHH----------HSEEEEECBCT-TTCSBC----HHHHHHHH
T ss_pred HHHHHHHHhc--CCCCEEEEecccccchhcccchhhhccc----------eeEEEeccccc-ccCCcC----HHHHHHHH
Confidence 9999999773 35678888888765543211 111111 01112211100 011112 57888888
Q ss_pred hccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCC-Cccee--eecc
Q 011777 245 DFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGV-IPDIV--TMAK 321 (477)
Q Consensus 245 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv-~pDiv--t~sK 321 (477)
+. .++++|++.|.+. |.. ..+++|.++|++||+++|+||+|+ +|+.+..... .++ .+|++ +++|
T Consensus 160 ~~---~~~~~v~~~~~~~--~~~----~~l~~i~~l~~~~~~~li~Dea~~-~g~~~~~~~~---~~~~~~di~~~s~sK 226 (405)
T 2vi8_A 160 RL---HRPKLIVAAAAAY--PRI----IDFAKFREIADEVGAYLMVDMAHI-AGLVAAGLHP---NPVPYAHFVTTTTHK 226 (405)
T ss_dssp HH---HCCSEEEECCSSC--CSC----CCHHHHHHHHHHHTCEEEEECTTT-HHHHHTTSSC---CSTTTCSEEEEESSS
T ss_pred Hh---cCCeEEEEeCCCC--Ccc----CCHHHHHHHHHHcCCEEEEEcccc-ccccccCcCC---CccccCCEEEEeccc
Confidence 62 1457777765332 322 238999999999999999999998 5443211111 111 46776 7899
Q ss_pred cccCccceEEEEeCHHHHHhhcccccccCCCC-cHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCCC
Q 011777 322 GIGNGLPLGAVVTTPEIANVMAQKIQFNTFGG-NPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERHDI 397 (477)
Q Consensus 322 ~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~-~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~ 397 (477)
+++++.. |++++++++++.+......+++++ ++..++++.++++.+.. ++..++++++++++.+.|+++ ....
T Consensus 227 ~~~g~~g-G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~ 303 (405)
T 2vi8_A 227 TLRGPRG-GMILCQEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE--GFTL 303 (405)
T ss_dssp TTCCCSC-EEEEECHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT--TCEE
T ss_pred cCCCCCC-eEEEEcHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC--CCeE
Confidence 9985444 999999999887765433344444 67777777788876543 566778888888888888765 2221
Q ss_pred ceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC--------CCCCEEEEeCCC----CCcHHHHHH
Q 011777 398 IGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG--------LHGNVFRIKPPM----CFTKDDADF 465 (477)
Q Consensus 398 ~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--------~~~~~iRi~p~~----~~t~e~i~~ 465 (477)
.. ..+.+.++++.+.... .....+.+.|.++||.+.++. ...+++||+++. .++++|+++
T Consensus 304 ~~-~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~ 375 (405)
T 2vi8_A 304 VS-GGTDNHLLLVDLRPQQ-------LTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDE 375 (405)
T ss_dssp GG-GSCSSSEEEEECGGGT-------CCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHH
T ss_pred ec-CCCCceEEEEEccCCC-------CCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHH
Confidence 11 1235778888773210 013567788889999998753 124689999886 578999999
Q ss_pred HHHHHHHHHhh
Q 011777 466 LVDALDYSMSK 476 (477)
Q Consensus 466 ~l~~l~~~l~~ 476 (477)
++++|++++++
T Consensus 376 ~~~~l~~~~~~ 386 (405)
T 2vi8_A 376 IAAIIGLVLKN 386 (405)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhc
Confidence 99999998864
No 158
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.92 E-value=2.4e-23 Score=209.94 Aligned_cols=289 Identities=16% Similarity=0.071 Sum_probs=201.2
Q ss_pred ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777 130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY 209 (477)
Q Consensus 130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~ 209 (477)
|....+.++...+++++|+++++. +.+++++||++|++.+++.+. .++++||+.++.||+...........
T Consensus 58 ~~y~r~~~~~~~~l~~~la~~~g~--~~~~~~~sGt~A~~~al~~~~--~~gd~Vi~~~~~y~~~~~~~~~~~~~----- 128 (392)
T 3qhx_A 58 YEYARTGNPTRTALEAALAAVEDA--AFGRAFSSGMAAADCALRAML--RPGDHVVIPDDAYGGTFRLIDKVFTG----- 128 (392)
T ss_dssp BCBTTTCCHHHHHHHHHHHHHTTC--SEEEEESSHHHHHHHHHHHHC--CTTCEEEEETTCCHHHHHHHHHTGGG-----
T ss_pred ccccCCCChHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHh--CCCCEEEEeCCCcchHHHHHHHHHHh-----
Confidence 445567788899999999999865 479999999999999999763 46788999999998754332111100
Q ss_pred CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777 210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI 289 (477)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI 289 (477)
.|+....++.. | +++++++++ +++++|++|+++|++|.+.+ +++|.++|++||+++|
T Consensus 129 ----~g~~~~~v~~~-------d----~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~g~~li 185 (392)
T 3qhx_A 129 ----WNVEYTPVALA-------D----LDAVRAAIR----PTTRLIWVETPTNPLLSIAD----IAGIAQLGADSSAKVL 185 (392)
T ss_dssp ----GTCEEEEECTT-------C----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEE
T ss_pred ----cCcEEEEeCCC-------C----HHHHHHhhC----CCCeEEEEECCCCCCcEEec----HHHHHHHHHHcCCEEE
Confidence 12222222211 1 578888876 47899999999999998776 9999999999999999
Q ss_pred EcCcccCccCCCCCCccccccCCCcceee--ecccccC-c-cceEEEEeC-HHHHHhhcccccccCCCCcHHHHHHHHHH
Q 011777 290 ADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGN-G-LPLGAVVTT-PEIANVMAQKIQFNTFGGNPVCSAGGLAV 364 (477)
Q Consensus 290 ~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G-~pig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~ 364 (477)
+||+|+.+ .. .+..+..+|+++ ++|.+++ | +++|+++++ +++.+.+....+..++..+++.+++++..
T Consensus 186 ~D~~~~~~-~~------~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 258 (392)
T 3qhx_A 186 VDNTFASP-AL------QQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRG 258 (392)
T ss_dssp EECTTTCT-TT------CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_pred EECCCccc-cc------CChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhh
Confidence 99999732 11 122344567776 8899996 5 789999998 68888776655556677889999888888
Q ss_pred HHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceee------------------eccceeEEEEEeeCCCCCCccHHHH
Q 011777 365 LRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDV------------------RGRGLMVGMELVTDRKEKTPAKAET 426 (477)
Q Consensus 365 l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v------------------~g~g~~~~i~~~~~~~~~~~~~~~~ 426 (477)
++.+. ...++..++.+++.+.|.+ ++.+..+ +|.|.++++++.. .....
T Consensus 259 l~~l~--~~~~~~~~~~~~l~~~L~~----~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~-------~~~~~ 325 (392)
T 3qhx_A 259 LKTLV--LRMQRHSENAAAVAEFLAE----HPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRA-------GRTAA 325 (392)
T ss_dssp HTTHH--HHHHHHHHHHHHHHHHHHT----CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT-------CHHHH
T ss_pred hhHHH--HHHHHHHHHHHHHHHHHhc----CCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCC-------cHHHH
Confidence 76543 2345555556666555543 3333222 5668899999842 12345
Q ss_pred HHHHHHHHHcCceeeccC----------------------CCCCEEEEeCCCCCcHHHHHHHHHHH
Q 011777 427 AVLFEKLRELGVLVGKGG----------------------LHGNVFRIKPPMCFTKDDADFLVDAL 470 (477)
Q Consensus 427 ~~~~~~l~~~Gv~v~~~~----------------------~~~~~iRi~p~~~~t~e~i~~~l~~l 470 (477)
..+.+.|...|+.+..|+ ...+.|||+.....++++|+.+.++|
T Consensus 326 ~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~al 391 (392)
T 3qhx_A 326 EQLCAKTNIFILAESLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGIEDVADLLDDLKQAL 391 (392)
T ss_dssp HHHHHHCSSSEECSCCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred HHHHHhCCCceECCCCCCCCceeeCcccccccccCHHHcCCCCCeEEEEeccCCHHHHHHHHHHHh
Confidence 667777766666654432 12467999888776666666655554
No 159
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.92 E-value=3.7e-23 Score=210.01 Aligned_cols=305 Identities=14% Similarity=0.085 Sum_probs=205.4
Q ss_pred cCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEc
Q 011777 109 SCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALR 188 (477)
Q Consensus 109 ~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~ 188 (477)
.++|.+|+.++++.+ ....+....+.++...+++++++++++. +.++|++||++|++.+++.+ ..++++|++..
T Consensus 29 ~~~~~~~~~~~~~~~--~~~~~~y~~~~~~~~~~l~~~la~~~g~--~~~~~~~~gt~a~~~al~~l--~~~gd~vi~~~ 102 (412)
T 2cb1_A 29 AYGFKTLEEGQERFA--TGEGYVYARQKDPTAKALEERLKALEGA--LEAVVLASGQAATFAALLAL--LRPGDEVVAAK 102 (412)
T ss_dssp BCCCSSHHHHHHHHH--HCCSCSBTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHTT--CCTTCEEEEET
T ss_pred eeecCChHHHHHHhc--cccCcCcCCCCChHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHH--hCCCCEEEEeC
Confidence 467788776666544 2233434444567899999999999865 58999999999999999865 33567899999
Q ss_pred cCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeee
Q 011777 189 NAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVE 268 (477)
Q Consensus 189 ~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~ 268 (477)
+.|++.......... ..|+....++. | .++++++++ +++++|+++++++++|.+.
T Consensus 103 ~~~~~~~~~~~~~~~---------~~g~~~~~~~~--------~----~~~l~~~i~----~~~~~v~~~~~~n~~G~~~ 157 (412)
T 2cb1_A 103 GLFGQTIGLFGQVLS---------LMGVTVRYVDP--------E----PEAVREALS----AKTRAVFVETVANPALLVP 157 (412)
T ss_dssp TCCHHHHHHHHHTTT---------TTTCEEEEECS--------S----HHHHHHHCC----TTEEEEEEESSCTTTCCCC
T ss_pred CCchhHHHHHHHHHH---------HcCCEEEEECC--------C----HHHHHHHhc----cCCeEEEEeCCCCCCcccc
Confidence 999864332211000 01333222221 1 478888775 4789999999999999877
Q ss_pred CCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceee--ecccccC-ccceEEEEeCH---------
Q 011777 269 LAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGN-GLPLGAVVTTP--------- 336 (477)
Q Consensus 269 ~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G~pig~v~~~~--------- 336 (477)
+ +++|.++|++||+++|+||+|++++... .. .+..+|+++ ++|.+++ |.|+|++++.+
T Consensus 158 ~----l~~i~~l~~~~~~~li~D~~~~~~~~~~-~~-----~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~ 227 (412)
T 2cb1_A 158 D----LEALATLAEEAGVALVVDNTFGAAGALC-RP-----LAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYP 227 (412)
T ss_dssp C----HHHHHHHHHHHTCEEEEECGGGTTTTSC-CG-----GGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSG
T ss_pred c----HHHHHHHHHHcCCEEEEECCCccccccC-Cc-----cccCCeEEEECCcccccCCCCcEEEEEEecccccccccc
Confidence 6 9999999999999999999998663322 11 123467775 8899986 78899887644
Q ss_pred -------------------HHHHhhcccc-cccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCC
Q 011777 337 -------------------EIANVMAQKI-QFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHD 396 (477)
Q Consensus 337 -------------------~~~~~~~~~~-~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~ 396 (477)
++.+.++... ....+..++..++.++..++.+ +...++..++.+++.+.|.+ ++
T Consensus 228 ~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l--~~~~~~~~~~~~~l~~~L~~----~~ 301 (412)
T 2cb1_A 228 QFLQPDLKGQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLETV--ALRVARMSETARFLAERLQG----HP 301 (412)
T ss_dssp GGGCC-------HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGGH--HHHHHHHHHHHHHHHHHHHT----CT
T ss_pred ccccccccccchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCchH--HHHHHHHHHHHHHHHHHHHc----CC
Confidence 3333333221 1122345788777777777654 33445556677777777654 23
Q ss_pred Cceee------------------eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC--------------
Q 011777 397 IIGDV------------------RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG-------------- 444 (477)
Q Consensus 397 ~~~~v------------------~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------------- 444 (477)
.+..+ ++.|.++.+.+ .+ ...+.+.|.+.||.+ .+.
T Consensus 302 ~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~~----------~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~ 369 (412)
T 2cb1_A 302 KVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-GD----------LERASRFLGAIRLLK-AANLGDARTLLVHPWTT 369 (412)
T ss_dssp TCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-SS----------HHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTT
T ss_pred CeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-CC----------HHHHHHHHHhCCeee-ecccCCCcceeecCccc
Confidence 23222 35677888877 31 235666777789887 431
Q ss_pred --------------CCCCEEEEeCCCCCcHHHHHHHHHHHHH
Q 011777 445 --------------LHGNVFRIKPPMCFTKDDADFLVDALDY 472 (477)
Q Consensus 445 --------------~~~~~iRi~p~~~~t~e~i~~~l~~l~~ 472 (477)
...+.+|+++....++++|+.++++|++
T Consensus 370 ~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 370 THSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp TTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred ccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 0147899999999999999999988864
No 160
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.92 E-value=1.8e-23 Score=206.86 Aligned_cols=331 Identities=15% Similarity=0.136 Sum_probs=211.3
Q ss_pred EEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHH
Q 011777 97 RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMAR 176 (477)
Q Consensus 97 ~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar 176 (477)
++|||.++... ..+|++.+++.+.... ....+..+...+|+++|+++++. +.+++++||++|+.++++...
T Consensus 4 ~~i~~~~~~~~----~p~~~~~~a~~~~~~~---~~~y~~~~~~~~l~~~la~~~g~--~~~~~~~~gt~a~~~~~~~~~ 74 (347)
T 1jg8_A 4 MMIDLRSDTVT----KPTEEMRKAMAQAEVG---DDVYGEDPTINELERLAAETFGK--EAALFVPSGTMGNQVSIMAHT 74 (347)
T ss_dssp -CEECSCGGGC----CCCHHHHHHHHTCCCC---CGGGTCCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHHC
T ss_pred eEEEeccccCC----CCCHHHHHHHhcCCCC---CcccCCChHHHHHHHHHHHHhCC--ceEEEecCcHHHHHHHHHHhc
Confidence 56888877652 2678888888654211 11223466788999999999854 578999999999999987653
Q ss_pred hccCCceEEEEccCccCCccc--ccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc--CCCCe
Q 011777 177 LSTGNLGMIALRNAYHGGSSG--TIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG--TSGKV 252 (477)
Q Consensus 177 ~~~~~~~ii~~~~~yhG~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~~ 252 (477)
.++++|++.+++|...... ..... |...+.+ ......++ +++++++++.. +..++
T Consensus 75 --~~gd~Vl~~~~~~~~~~~~~~~~~~~------------g~~~~~v-~~~~~~~d------~~~l~~~i~~~~~~~~~~ 133 (347)
T 1jg8_A 75 --QRGDEVILEADSHIFWYEVGAMAVLS------------GVMPHPV-PGKNGAMD------PDDVRKAIRPRNIHFPRT 133 (347)
T ss_dssp --CTTCEEEEETTCHHHHSSTTHHHHHT------------CCEEEEE-CEETTEEC------HHHHHHHSCCSCTTSCCE
T ss_pred --CCCCEEEEcCcchhhhccccchhhcc------------CeEEEEe-cCCCCccC------HHHHHHHhccccccccCc
Confidence 3567888888876542221 11111 1222221 11001111 57888877621 01268
Q ss_pred eEEEecccCCCC-CeeeCCchhHHHHHHHHHHhCcEEEEcCcccCcc---CCCCCCccccccCCCcceeeecccccCccc
Q 011777 253 AGFIAETIQGVG-GAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFG---RTGSHYWGFETQGVIPDIVTMAKGIGNGLP 328 (477)
Q Consensus 253 a~vi~epi~~~~-G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfg---r~G~~~~~~~~~gv~pDivt~sK~lg~G~p 328 (477)
++|++++++|++ | ...+.+++++|.++|++||+++|+||+|. ++ ..|....... .+...-++++||++++ |
T Consensus 134 ~~v~~~~~~npt~G-~~~~~~~l~~i~~~a~~~~~~li~D~a~~-~~~~~~~~~~~~~~~-~~~d~~~~s~sK~l~~--~ 208 (347)
T 1jg8_A 134 SLIAIENTHNRSGG-RVVPLENIKEICTIAKEHGINVHIDGARI-FNASIASGVPVKEYA-GYADSVMFCLSKGLCA--P 208 (347)
T ss_dssp EEEEEESSBTTTTS-BCCCHHHHHHHHHHHHHHTCEEEEEETTH-HHHHHHHCCCHHHHH-HTCSEEEEESSSTTCC--S
T ss_pred eEEEEeccccccCC-ccCcHHHHHHHHHHHHHCCCEEEeehhhh-hcchhhcCCChHHhc-ccccEEEEecccccCC--C
Confidence 899999888887 6 56678889999999999999999999875 21 1221111110 1221124469999975 4
Q ss_pred eE-EEEeCHHHHHhhccc--ccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccc
Q 011777 329 LG-AVVTTPEIANVMAQK--IQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRG 405 (477)
Q Consensus 329 ig-~v~~~~~~~~~~~~~--~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g 405 (477)
+| ++++++++++.+... ..++++..+.+.++++..+++... +. .++..++.+++.+.|+++ ..... ..+..|
T Consensus 209 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~~~~~~~~l~~~L~~~--~~~~~-~~~~~~ 283 (347)
T 1jg8_A 209 VGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMV-DR-LKEDHENARFLALKLKEI--GYSVN-PEDVKT 283 (347)
T ss_dssp SCEEEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSS-TT-HHHHHHHHHHHHHHHHHH--TCBCC-GGGCCS
T ss_pred ceEEEEcCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHhc--Cceec-cCCCcc
Confidence 67 566788887765432 223445556677777777776532 22 333445667777777765 22211 123456
Q ss_pred eeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 406 LMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 406 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
.++++.+... .....++.+.|+++||.+.+++ .+++|++++..++++|+++++++|++++++
T Consensus 284 ~~~~~~~~~~-------~~~~~~~~~~l~~~gi~v~~~~--~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~ 345 (347)
T 1jg8_A 284 NMVILRTDNL-------KVNAHGFIEALRNSGVLANAVS--DTEIRLVTHKDVSRNDIEEALNIFEKLFRK 345 (347)
T ss_dssp SEEEEECTTS-------SSCHHHHHHHHHHHTEECEEEE--TTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEcccc-------cCCHHHHHHHHHHCCCEEecCC--CCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 6777766210 0124568888889999998764 578999998889999999999999998764
No 161
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.92 E-value=8.5e-24 Score=219.93 Aligned_cols=332 Identities=16% Similarity=0.125 Sum_probs=208.8
Q ss_pred CCHHHHHHHHHHHhhccc-ccccc-----CChHHHHHHHHHHhhC--CCCCCEEEEeCChHHHHHHHHHHHHhccCCceE
Q 011777 113 CHPDVLNAIFEQSKLLQH-ATTIY-----LHHAIADFAEALASKM--PGNLKVVYFVNSGTEANELAMLMARLSTGNLGM 184 (477)
Q Consensus 113 ~~p~v~~Av~~~l~~~~~-~~~~~-----~~~~~~~l~~~La~~~--~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~i 184 (477)
.++++++++.+++..... ....| ..+.+..+++.+.+.. +.+.++|++|+||++|+..+++.... .+++.|
T Consensus 107 ~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~V 185 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIR-NEKDGI 185 (500)
T ss_dssp SCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCC-STTEEE
T ss_pred CCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcC-CCCCEE
Confidence 467788888888876321 11222 2344555666555442 34567899999999999999987631 256789
Q ss_pred EEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc--CCCCeeEEEecccCC
Q 011777 185 IALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG--TSGKVAGFIAETIQG 262 (477)
Q Consensus 185 i~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~~a~vi~epi~~ 262 (477)
++..++|+++.......+ ...+.++......+..| +++|++.++.. ...++++|++...+|
T Consensus 186 lv~~p~y~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~d----~~~l~~~l~~~~~~~~~~k~ivl~~p~N 248 (500)
T 3tcm_A 186 LVPIPQYPLYSASIALHG-------------GALVPYYLNESTGWGLE----TSDVKKQLEDARSRGINVRALVVINPGN 248 (500)
T ss_dssp EEEESCCTHHHHHHHHTT-------------CEEEEEECBTTTTSBCC----HHHHHHHHHHHHHTTCEEEEEEEESSCT
T ss_pred EEeCCCcHhHHHHHHHcC-------------CEEEEEecccccCCCCC----HHHHHHHHHHHHhcCCCceEEEEECCCC
Confidence 999999987765544332 22222221111112222 47788877631 112565555555566
Q ss_pred CCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCC-CCcccc----ccCC-C--cc-ee--eecccc-c-Cccce
Q 011777 263 VGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS-HYWGFE----TQGV-I--PD-IV--TMAKGI-G-NGLPL 329 (477)
Q Consensus 263 ~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~-~~~~~~----~~gv-~--pD-iv--t~sK~l-g-~G~pi 329 (477)
++| .+++.+.+++|.++|++||+++|+||+|.++.+.+. .+..+. .++. . .+ ++ +|||++ | .|+|+
T Consensus 249 PtG-~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~ 327 (500)
T 3tcm_A 249 PTG-QVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRG 327 (500)
T ss_dssp TTC-CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCC
T ss_pred CCc-ccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccce
Confidence 777 456788899999999999999999999998765431 222221 1211 1 12 33 789999 5 59999
Q ss_pred EEEEe---CHHHHHhhcccccccCCCCcHHHHHHHHHHHHhh-----------ch-hhHHHHHHHHHHHHHHHHHHHHHh
Q 011777 330 GAVVT---TPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVI-----------DK-ERRQAHCADVGSHLLGRLRTLQER 394 (477)
Q Consensus 330 g~v~~---~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l-----------~~-~~~~~~~~~~~~~l~~~L~~l~~~ 394 (477)
||+++ ++++++.+.... ..+++.++++++++..+++.. +. +.+.++++++.+++.+.|++
T Consensus 328 G~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~---- 402 (500)
T 3tcm_A 328 GYFEITGFSAPVREQIYKIA-SVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNK---- 402 (500)
T ss_dssp EEEEEESCCTTHHHHHHHHH-HTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred EEEEEeCCCHHHHHHHHHHH-hcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 99998 888888876543 345677888988888887521 11 23445555555555555544
Q ss_pred CCCceeeeccc-eeEEEEEeeCCCCCCccH-----------HHHHHHHHHHHHcCceeeccCCC-----CCEEEEeCCCC
Q 011777 395 HDIIGDVRGRG-LMVGMELVTDRKEKTPAK-----------AETAVLFEKLRELGVLVGKGGLH-----GNVFRIKPPMC 457 (477)
Q Consensus 395 ~~~~~~v~g~g-~~~~i~~~~~~~~~~~~~-----------~~~~~~~~~l~~~Gv~v~~~~~~-----~~~iRi~p~~~ 457 (477)
.+.+......| +++++.+.. |.. .....+.+.|.++||++.|+..+ .++||+++.
T Consensus 403 ~~g~~~~~~~g~~~~~~~~~l------p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~-- 474 (500)
T 3tcm_A 403 LEGITCNEAEGAMYVFPQICL------PQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL-- 474 (500)
T ss_dssp STTEECCCCCBTTEECCEECC------CHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC--
T ss_pred CCCcEEecCCeEEEEeeeecC------chhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC--
Confidence 33344444444 444544421 111 01112345667789999987433 247999866
Q ss_pred CcHHHHHHHHHHHHHHHhh
Q 011777 458 FTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 458 ~t~e~i~~~l~~l~~~l~~ 476 (477)
.+++++++++++|.+++++
T Consensus 475 ~~~e~i~~~i~~l~~~~~~ 493 (500)
T 3tcm_A 475 PQEDKIPAVISRFTVFHEA 493 (500)
T ss_dssp SCTTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 8899999999999988764
No 162
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.92 E-value=1.3e-23 Score=210.59 Aligned_cols=318 Identities=11% Similarity=0.066 Sum_probs=204.4
Q ss_pred CCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCC----CCEEEEeCChHHHHHHHHHHHHh-ccCCceEEEE
Q 011777 113 CHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGN----LKVVYFVNSGTEANELAMLMARL-STGNLGMIAL 187 (477)
Q Consensus 113 ~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~----~~~v~~~~sGseA~~~Al~~ar~-~~~~~~ii~~ 187 (477)
.+|+|.+++.+++.. +... ...+...++.+++++++... .++++|++||++|++.+++.+.. ..++++|+++
T Consensus 16 ~~~~v~~a~~~~~~~--~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~ 92 (385)
T 2bkw_A 16 LSGAVQKALDVPSLG--HTSP-EFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVV 92 (385)
T ss_dssp CCHHHHHTTSCCCCC--TTSH-HHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEE
T ss_pred chHHHHHHHhccccc--cCCH-HHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEE
Confidence 468888887654332 1110 01123556777888777542 47899999999999999997641 1355678787
Q ss_pred cc-CccCCcccccccccCCCCCCCCCCCCeeeecCCC-CcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCC
Q 011777 188 RN-AYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPD-PYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGG 265 (477)
Q Consensus 188 ~~-~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G 265 (477)
+. .||.......... |...+.++. ......+ +++|+++++. +++++|+++++++++|
T Consensus 93 ~~~~~~~~~~~~~~~~------------g~~~~~v~~~~~~~~~d------~~~l~~~l~~---~~~~~v~~~~~~nptG 151 (385)
T 2bkw_A 93 STGTFSDRFADCLRSY------------GAQVDVVRPLKIGESVP------LELITEKLSQ---NSYGAVTVTHVDTSTA 151 (385)
T ss_dssp CSSHHHHHHHHHHHHT------------TCEEEEECCSSTTSCCC------HHHHHHHHHH---SCCSEEEEESEETTTT
T ss_pred cCCcchHHHHHHHHHc------------CCceEEEecCCCCCCCC------HHHHHHHHhc---CCCCEEEEEccCCCcC
Confidence 44 5655421111111 222222221 1111122 5788888862 2578888999999999
Q ss_pred eeeCCchhHHHHHHHHHHh--CcEEEEcCcccCccCCCCCCccccccCCCcceee--ecccccCccceEEEEeCHHHHH-
Q 011777 266 AVELAPGYLKLVYDIVRKA--GGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGNGLPLGAVVTTPEIAN- 340 (477)
Q Consensus 266 ~~~~~~~~l~~l~~l~~~~--gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~pig~v~~~~~~~~- 340 (477)
.+.+ +++|.++|++| |+++|+||+|+ +|. ..+.+..+ .+|+++ ++|+++++.++|++++++++++
T Consensus 152 ~~~~----l~~i~~~~~~~~~~~~li~D~a~~-~~~---~~~~~~~~--~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~ 221 (385)
T 2bkw_A 152 VLSD----LKAISQAIKQTSPETFFVVDAVCS-IGC---EEFEFDEW--GVDFALTASQKAIGAPAGLSISLCSSRFMDY 221 (385)
T ss_dssp EECC----HHHHHHHHHHHCTTSEEEEECTTT-TTT---SCCCTTTT--TCSEEEEESSSTTCCCSCEEEEEECHHHHHH
T ss_pred eEcC----HHHHHHHHHhhCCCCEEEEECccc-cCC---cccccccc--CceEEEecCccccccCCcceEEEEcHHHHHH
Confidence 8776 89999999999 99999999997 432 12222323 356664 5799987666799999998876
Q ss_pred hhcc---------------------ccccc----CCCCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHH-HHH
Q 011777 341 VMAQ---------------------KIQFN----TFGGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRL-RTL 391 (477)
Q Consensus 341 ~~~~---------------------~~~~~----t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L-~~l 391 (477)
.+.. ....+ .++.|+.+++++.++++.+.+ ++..++.+++.+++.+.| +++
T Consensus 222 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 301 (385)
T 2bkw_A 222 ALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL 301 (385)
T ss_dssp HTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5421 00001 135678888888888887654 345667777777777777 543
Q ss_pred HHhCCCceeee---ccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC---CCCEEEEe-CC---CCCcHH
Q 011777 392 QERHDIIGDVR---GRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL---HGNVFRIK-PP---MCFTKD 461 (477)
Q Consensus 392 ~~~~~~~~~v~---g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---~~~~iRi~-p~---~~~t~e 461 (477)
......... ..+.++++.+. . ..++.+.|.++||.+.++.. ..+++||+ .+ +.++++
T Consensus 302 --g~~~~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e 368 (385)
T 2bkw_A 302 --QLTSVSRYPSNMSAHGLTAVYVA--------D---PPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLP 368 (385)
T ss_dssp --CCEESSCSSSTTBCSSCEEEECS--------C---HHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCT
T ss_pred --CceecccCcccccCCceEEEecC--------C---HHHHHHHHHHCCeEEeCCCCcccCCCEEEEEccccccccCCHH
Confidence 111111000 24677777652 1 45688888899999988642 24789998 44 257999
Q ss_pred HHHHHHHHHHHHHhhC
Q 011777 462 DADFLVDALDYSMSKL 477 (477)
Q Consensus 462 ~i~~~l~~l~~~l~~l 477 (477)
|+++++++|+++++++
T Consensus 369 ~i~~~~~~l~~~~~~~ 384 (385)
T 2bkw_A 369 YMKNCFDLIKLALQRK 384 (385)
T ss_dssp HHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999988653
No 163
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.92 E-value=6.7e-24 Score=222.49 Aligned_cols=351 Identities=12% Similarity=0.046 Sum_probs=206.6
Q ss_pred EEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHH-hhCCC-----CCCEEEEeCChHHHHHHH
Q 011777 98 YLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALA-SKMPG-----NLKVVYFVNSGTEANELA 171 (477)
Q Consensus 98 ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La-~~~~~-----~~~~v~~~~sGseA~~~A 171 (477)
++||..|. .++.+|.+++++.+++....|....+..+.++++++.+. +.... +.++|++|+|++||+..+
T Consensus 106 ~i~l~~g~----~~~~~~~~~~al~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~ 181 (546)
T 2zy4_A 106 SLSYVRDQ----LGLDPAAFLHEMVDGILGCNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYI 181 (546)
T ss_dssp HHHHHHHT----SCCCHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHH
T ss_pred hhecccCC----CCCCChHHHHHHHHhhhcCCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHH
Confidence 45554443 467788899988887753333332234456666666553 33211 347899999999999999
Q ss_pred HHHH--Hhc-cCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777 172 MLMA--RLS-TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT 248 (477)
Q Consensus 172 l~~a--r~~-~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~ 248 (477)
++.. +.. .+++.|++.+++|+++...+..... +...+.++......|..| +++|++++.
T Consensus 182 ~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~-----------g~~~~~v~~~~~~~~~~d----~~~l~~~~~--- 243 (546)
T 2zy4_A 182 FESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQY-----------ALEEVAINADPSLNWQYP----DSELDKLKD--- 243 (546)
T ss_dssp HHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTS-----------CCEEEEEECBGGGTTBCC----HHHHGGGGS---
T ss_pred HHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCC-----------CcEEEEEecCcccCCCCC----HHHHHHhhC---
Confidence 9863 222 3567899999999998665322110 222222222111112112 466666553
Q ss_pred CCCeeEEEecccCCCCCeeeCCchhHHHHHHHH--HHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeeccccc-C
Q 011777 249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIV--RKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIG-N 325 (477)
Q Consensus 249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~--~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg-~ 325 (477)
.++++|+++..+|++| .+.+.+.+++|.++| ++||++||+||+|.+|......+... ..+....+.+|||.+| .
T Consensus 244 -~~~k~v~l~~p~NPtG-~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~-~~~~~i~~~S~SK~~g~~ 320 (546)
T 2zy4_A 244 -PAIKIFFCVNPSNPPS-VKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAI-CPENTLLVYSFSKYFGAT 320 (546)
T ss_dssp -TTEEEEEEESSCSSSC-BCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHH-CGGGEEEEEESTTTTTCG
T ss_pred -CCCeEEEEECCCCCCC-ccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHh-CCCCEEEEEeCccccCCC
Confidence 4566666666677777 556888899999999 78999999999999887533111111 1123334558999998 6
Q ss_pred ccceEEEEeCHH-HHHhhccc------------------------------------ccccCCCCcHHHHHHHH--HHHH
Q 011777 326 GLPLGAVVTTPE-IANVMAQK------------------------------------IQFNTFGGNPVCSAGGL--AVLR 366 (477)
Q Consensus 326 G~pig~v~~~~~-~~~~~~~~------------------------------------~~~~t~~~~~~~~aaa~--a~l~ 366 (477)
|+|+||++++++ +++.+... ....+.+.+.+.+.++. +...
T Consensus 321 GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~a 400 (546)
T 2zy4_A 321 GWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFA 400 (546)
T ss_dssp GGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHH
T ss_pred CcceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHH
Confidence 999999999875 76665210 01223355666665532 1112
Q ss_pred hhch-hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccH----------HHHHHHHHHHHH
Q 011777 367 VIDK-ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAK----------AETAVLFEKLRE 435 (477)
Q Consensus 367 ~l~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~----------~~~~~~~~~l~~ 435 (477)
.+++ +.+.+++++..+..++.+.+... .+........|+++|+++..-. ...+.. .....+.+.+.+
T Consensus 401 ll~~~~~~~~~~r~~~~~r~~~l~~~L~-~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~wl~~~~~~~~~l~~ll~~ 478 (546)
T 2zy4_A 401 LMDEADEYKHTLKQLIRRRETTLYRELG-MPPLRDENAVDYYTLIDLQDVT-AKLYGEAFSEWAVKQSSTGDMLFRIADE 478 (546)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHGGGT-SSCCCCTTBCCSEEEEEHHHHH-HHHHCHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHhcC-CCcccCCCCeeEEEEEEHHHhh-cccccHHHHHHhhccCCHHHHHHHHHHH
Confidence 2322 33444444433333333322221 2221122234566687762100 000000 012346778889
Q ss_pred cCceeeccCCC---CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 436 LGVLVGKGGLH---GNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 436 ~Gv~v~~~~~~---~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
+||.+.||..+ .+++||++. ..+++++++++++|++++.+
T Consensus 479 ~gV~v~pG~~F~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~ 521 (546)
T 2zy4_A 479 TGIVLLPGRGFGSNRPSGRASLA-NLNEYEYAAIGRALRKMADE 521 (546)
T ss_dssp HSCCCEESSCTTCSSCEEEEESS-SSCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEeCccccCCCCCeEEEEec-cCCHHHHHHHHHHHHHHHHH
Confidence 99999998544 368999875 45899999999999988753
No 164
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.92 E-value=3.3e-24 Score=214.39 Aligned_cols=315 Identities=14% Similarity=0.109 Sum_probs=199.8
Q ss_pred ccCCCCCHH---HHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceE
Q 011777 108 VSCGHCHPD---VLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGM 184 (477)
Q Consensus 108 ~~lGh~~p~---v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~i 184 (477)
.++|+++|. +.+++.+.+... ..+..+...++++.|+++++. +.+++++||++|++.+++.++ ..++++|
T Consensus 9 ~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~~~~~~~-~~~gd~v 81 (374)
T 3uwc_A 9 SYLERQFADIEPYLNDLREFIKTA----DFTLGAELEKFEKRFAALHNA--PHAIGVGTGTDALAMSFKMLN-IGAGDEV 81 (374)
T ss_dssp CCHHHHTSSCHHHHHHHHHHHHHT----CCSSCHHHHHHHHHHHHHTTC--SEEEEESCHHHHHHHHHHHTT-CCTTCEE
T ss_pred eccccCCCCchHHHHHHHHHHHcC----CcccChhHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHcC-CCCCCEE
Confidence 344444433 555555555442 234567789999999999965 489999999999999998763 2356789
Q ss_pred EEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCC
Q 011777 185 IALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVG 264 (477)
Q Consensus 185 i~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~ 264 (477)
++..++||+........ |...+.++... .+..| ++++++.++ +++++|+ |. +++
T Consensus 82 ~~~~~~~~~~~~~~~~~-------------g~~~~~~~~~~--~~~~d----~~~l~~~~~----~~~~~v~--~~-n~~ 135 (374)
T 3uwc_A 82 ITCANTFIASVGAIVQA-------------GATPVLVDSEN--GYVID----PEKIEAAIT----DKTKAIM--PV-HYT 135 (374)
T ss_dssp EEESSSCHHHHHHHHHT-------------TCEEEEECBCT--TSSBC----GGGTGGGCC----TTEEEEC--CB-CGG
T ss_pred EECCCccHHHHHHHHHc-------------CCEEEEEecCC--CCCcC----HHHHHHhCC----CCceEEE--Ee-CCc
Confidence 99999999876544322 22222222111 11111 356666654 3677776 44 456
Q ss_pred CeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec----ccccC-ccceEEEEeC-HHH
Q 011777 265 GAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA----KGIGN-GLPLGAVVTT-PEI 338 (477)
Q Consensus 265 G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s----K~lg~-G~pig~v~~~-~~~ 338 (477)
|.+.+ +++|.++|++||+++|+||+|+.+. .+.....+..+|++++| |.+++ |. .|+++++ +++
T Consensus 136 G~~~~----~~~i~~~~~~~~~~li~D~~~~~g~-----~~~~~~~~~~~d~~~~s~~~~K~l~~~g~-~g~~~~~~~~~ 205 (374)
T 3uwc_A 136 GNIAD----MPALAKIAKKHNLHIVEDACQTILG-----RINDKFVGSWGQFACFSLHPLKNLNVWSD-AGVIITHSDEY 205 (374)
T ss_dssp GCCCC----HHHHHHHHHHTTCEEEEECTTCTTC-----EETTEETTSSSSEEEEECSSSSSSCCSSC-CEEEEESCHHH
T ss_pred CCcCC----HHHHHHHHHHcCCEEEEeCCCccCc-----eeCCeeccccccEEEEeCCCCCcCCccce-eEEEEeCCHHH
Confidence 66555 9999999999999999999998332 22234445557988877 99987 65 7888875 456
Q ss_pred HHhhcccc------------cccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeee-ccc
Q 011777 339 ANVMAQKI------------QFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVR-GRG 405 (477)
Q Consensus 339 ~~~~~~~~------------~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~-g~g 405 (477)
.+.+.... .+.++..+++.+++++..++.+ +++.++.+++.+++++.|.++........... ...
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 283 (374)
T 3uwc_A 206 AEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLMNQL--ETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYH 283 (374)
T ss_dssp HHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHGGGH--HHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEEC
T ss_pred HHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCce
Confidence 55544321 1223344666666665554433 44667777777777777766421011111111 111
Q ss_pred eeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC-------------------------CCCEEEEeCCCCCcH
Q 011777 406 LMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL-------------------------HGNVFRIKPPMCFTK 460 (477)
Q Consensus 406 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------------------------~~~~iRi~p~~~~t~ 460 (477)
.++.+.+... ....+.+.|.++||.+.++.. ..+.+|++++..+|+
T Consensus 284 ~~~~~~~~~~---------~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~ 354 (374)
T 3uwc_A 284 VFHIYVLRVK---------YRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTE 354 (374)
T ss_dssp CCSSEEEEET---------THHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCH
T ss_pred eeEEEEEEcC---------CHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCH
Confidence 2222222111 245788999999999887630 016899999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 011777 461 DDADFLVDALDYSMSK 476 (477)
Q Consensus 461 e~i~~~l~~l~~~l~~ 476 (477)
+||++++++|++++++
T Consensus 355 edi~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 355 EEINYIIKKVREFYLE 370 (374)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999864
No 165
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.92 E-value=2.2e-23 Score=210.54 Aligned_cols=337 Identities=12% Similarity=0.021 Sum_probs=198.7
Q ss_pred EEeecCCcccccCCCC--CHHHHHHHHHHHhhccccccccC-----ChHHHHHHHHHHhhCC--CCCCEEEE--eCChHH
Q 011777 98 YLDAFAGIVTVSCGHC--HPDVLNAIFEQSKLLQHATTIYL-----HHAIADFAEALASKMP--GNLKVVYF--VNSGTE 166 (477)
Q Consensus 98 ylD~~~g~~~~~lGh~--~p~v~~Av~~~l~~~~~~~~~~~-----~~~~~~l~~~La~~~~--~~~~~v~~--~~sGse 166 (477)
.|||..|.+....++. .+++.+++.+.+... ....|. .+.++.+++.+....+ .+.++|++ |+||++
T Consensus 30 ~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~ 107 (401)
T 7aat_A 30 KMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKK--MDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTG 107 (401)
T ss_dssp CEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTT--CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred ceeeeeeeEECCCCCEechHHHHHHHHHhcccc--cccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchH
Confidence 5777777653333332 357788777765521 111222 2334444444443322 11567877 999999
Q ss_pred HHHHHHHHHHhc-cCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHh
Q 011777 167 ANELAMLMARLS-TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHID 245 (477)
Q Consensus 167 A~~~Al~~ar~~-~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~ 245 (477)
|+..+++..+.. .+++.|++.+++|+++....... |...+.+|......+.-| ++++++.++
T Consensus 108 al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~d----~~~l~~~l~ 170 (401)
T 7aat_A 108 SLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDA-------------GLQLQAYRYYDPKTCSLD----FTGAMEDIS 170 (401)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHT-------------TCEEEEEECEETTTTEEC----HHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHc-------------CCeeEeeeeeccccCccC----HHHHHHHHH
Confidence 999999876543 34678999999998875444332 122222221100011112 466666665
Q ss_pred ccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCC--CCccccc-cCCCcc---eeee
Q 011777 246 FGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS--HYWGFET-QGVIPD---IVTM 319 (477)
Q Consensus 246 ~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~--~~~~~~~-~gv~pD---ivt~ 319 (477)
.. ..+++++++...+|++|. .++.+.+++|.++|++||+++|+||+|.+|++.+. ..+.+.. .+..++ +.+|
T Consensus 171 ~~-~~~~~~v~i~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 248 (401)
T 7aat_A 171 KI-PEKSIILLHACAHNPTGV-DPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSY 248 (401)
T ss_dssp TS-CTTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEEC
T ss_pred hC-CCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecC
Confidence 42 346677777777788884 56888999999999999999999999999877541 0222221 122233 3579
Q ss_pred ccccc-CccceEEEEe---CHH----HHHhhcccccccCCCCcHHHHHHHHHHHHhh------c--hhhHHHHHHHHHHH
Q 011777 320 AKGIG-NGLPLGAVVT---TPE----IANVMAQKIQFNTFGGNPVCSAGGLAVLRVI------D--KERRQAHCADVGSH 383 (477)
Q Consensus 320 sK~lg-~G~pig~v~~---~~~----~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l------~--~~~~~~~~~~~~~~ 383 (477)
||.++ .|+|+||+++ +++ +.+.+......++.+.+.+++.++...++.- . -++..++++++.++
T Consensus 249 sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~ 328 (401)
T 7aat_A 249 AKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQ 328 (401)
T ss_dssp TTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 6999999886 566 3344433333344555666666666555421 0 12344555566666
Q ss_pred HHHHHHHHHHhCCCceee-eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHH
Q 011777 384 LLGRLRTLQERHDIIGDV-RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDD 462 (477)
Q Consensus 384 l~~~L~~l~~~~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~ 462 (477)
+.+.|+++... +.+... +..|++.++.+ + ...+...+.++||.+.++ +||+.+. +++++
T Consensus 329 l~~~L~~~~~~-~~~~~~~~~~~~~~~~~~--------~----~~~~~~ll~~~gi~v~~~------~Ris~~~-~~~~~ 388 (401)
T 7aat_A 329 LVSNLKKEGSS-HNWQHITDQIGMFCFTGL--------K----PEQVERLTKEFSIYMTKD------GRISVAG-VASSN 388 (401)
T ss_dssp HHHHHHHTTCC-SCCHHHHHCCSSEEECCC--------C----HHHHHHHHHHHCEECCTT------CEEEGGG-CCTTT
T ss_pred HHHHHHhcCCC-CCCceecCCcceEEecCC--------C----HHHHHHHHHhCCEeccCC------CeEEecc-CChhh
Confidence 66666553100 112222 23344555433 1 233444556789999764 5888764 45566
Q ss_pred HHHHHHHHHHHHh
Q 011777 463 ADFLVDALDYSMS 475 (477)
Q Consensus 463 i~~~l~~l~~~l~ 475 (477)
|++++++|+++++
T Consensus 389 i~~~~~~l~~~~~ 401 (401)
T 7aat_A 389 VGYLAHAIHQVTK 401 (401)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998763
No 166
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.92 E-value=3.4e-24 Score=217.22 Aligned_cols=334 Identities=14% Similarity=0.126 Sum_probs=205.3
Q ss_pred CEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccC-ChHHHHHHHHHHhhC-CCC-----CCEEE--EeCChHH
Q 011777 96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYL-HHAIADFAEALASKM-PGN-----LKVVY--FVNSGTE 166 (477)
Q Consensus 96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~-~~~~~~l~~~La~~~-~~~-----~~~v~--~~~sGse 166 (477)
..+|||..|.+.. ..++|.+.+++.++.... ...|. .....+|++.+++++ ... .++|. .+++|++
T Consensus 41 ~~~i~l~~g~~~d--~~~~~~v~~a~~~a~~~~---~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~g 115 (409)
T 4eu1_A 41 KRKVNLSIGVYRD--DADQPFVLECVKQATLGT---NMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTG 115 (409)
T ss_dssp SSCEECCCSSCCC--TTSCCCCCHHHHTCCCCS---CCCCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHH
T ss_pred cCceeeeeeEEEC--CCCCEeecHHHHhcCccc---cccCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchH
Confidence 3578888776411 135677888887762221 11222 223356666666654 222 35664 4999999
Q ss_pred HHHHHHHHHHhccC-CceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHh
Q 011777 167 ANELAMLMARLSTG-NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHID 245 (477)
Q Consensus 167 A~~~Al~~ar~~~~-~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~ 245 (477)
|++++..+++...+ ++.|++.+++|+++....... |...+.+|......+..| ++++++.++
T Consensus 116 a~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~d----~~~l~~~l~ 178 (409)
T 4eu1_A 116 ALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKA-------------GMELTPYSYYDPATKGLN----LAGMLECLD 178 (409)
T ss_dssp HHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHT-------------TCEEEEECCEETTTTEEC----HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHc-------------CCeEEEEEeecCcCCcCc----HHHHHHHHH
Confidence 99998887766654 488999999998775544333 222222221100111112 578888886
Q ss_pred ccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCC--CCcccc-ccCCCccee---ee
Q 011777 246 FGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS--HYWGFE-TQGVIPDIV---TM 319 (477)
Q Consensus 246 ~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~--~~~~~~-~~gv~pDiv---t~ 319 (477)
.. ++..+++++...+|++| ..++.+.+++|.++|++||+++|+||+|.+|++.+. ..++.. ..+..++++ +|
T Consensus 179 ~~-~~~~~~i~~~~p~NPtG-~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 256 (409)
T 4eu1_A 179 KA-PEGSVILVHACAHNPTG-VDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSF 256 (409)
T ss_dssp HS-CTTCEEEEESSSCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEEC
T ss_pred hC-CCCcEEEEECCCCCCCC-CCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecC
Confidence 32 23455555444456666 456888899999999999999999999999977541 012222 224445544 79
Q ss_pred ccccc-CccceEEE---EeCHH----HHHhhcccccccCCCCcHHHHHHHHHHHHhhc--------hhhHHHHHHHHHHH
Q 011777 320 AKGIG-NGLPLGAV---VTTPE----IANVMAQKIQFNTFGGNPVCSAGGLAVLRVID--------KERRQAHCADVGSH 383 (477)
Q Consensus 320 sK~lg-~G~pig~v---~~~~~----~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~--------~~~~~~~~~~~~~~ 383 (477)
||.+| .|+|+||+ +++++ +++.+......++++.+++++.++.++|+... .++..++++++.++
T Consensus 257 SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (409)
T 4eu1_A 257 SKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKR 336 (409)
T ss_dssp TTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 69999996 55677 55555544445566778899999888887421 12345556666666
Q ss_pred HHHHHHHHHHhCCC-ceeeec-cceeEEEEEeeCCCCCCccHHHHHHHHHHH-HHcCceeeccCCCCCEEEEeCCCCCcH
Q 011777 384 LLGRLRTLQERHDI-IGDVRG-RGLMVGMELVTDRKEKTPAKAETAVLFEKL-RELGVLVGKGGLHGNVFRIKPPMCFTK 460 (477)
Q Consensus 384 l~~~L~~l~~~~~~-~~~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~~~~iRi~p~~~~t~ 460 (477)
+.+.|+++. .+. +....+ .|.++++.+ + . ++...+ .++||.+.+++ ||+.+ .+++
T Consensus 337 l~~~L~~~g--~~~~~~~~~~~~~~~~~~~~--------~----~-~~~~~ll~~~gv~v~p~~------Ri~~~-~~~~ 394 (409)
T 4eu1_A 337 LVSELKACG--SVHDWSHIERQVGMMAYTGL--------T----R-EQVELLRSEYHIYMTLNG------RAAVS-GLNS 394 (409)
T ss_dssp HHHHHHHTT--CCSCCHHHHHSCSSEEECCC--------C----H-HHHHHHHHHHCEECCTTC------EEEGG-GCCT
T ss_pred HHHHHHhcC--CCCCcceecCCceEEEEeCC--------C----H-HHHHHHHHcCCEEEcCCC------EEEEE-ecCH
Confidence 666665531 111 111223 344445322 1 1 234444 46799998752 77764 4677
Q ss_pred HHHHHHHHHHHHHHh
Q 011777 461 DDADFLVDALDYSMS 475 (477)
Q Consensus 461 e~i~~~l~~l~~~l~ 475 (477)
++|++++++|+++++
T Consensus 395 ~~i~~~~~~l~~~l~ 409 (409)
T 4eu1_A 395 TNVEYVSQAIHNVTK 409 (409)
T ss_dssp TTHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHhC
Confidence 889999999998763
No 167
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.91 E-value=1.2e-22 Score=205.31 Aligned_cols=295 Identities=14% Similarity=0.020 Sum_probs=196.5
Q ss_pred ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777 130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY 209 (477)
Q Consensus 130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~ 209 (477)
+....+.++...+++++++++++. +.+++++||++|++.+++.+. .++++|++.++.||+...........
T Consensus 57 ~~~~r~~~~~~~~l~~~la~~~g~--~~~i~~~sG~~a~~~~l~~~~--~~gd~vl~~~~~~~~~~~~~~~~~~~----- 127 (398)
T 1gc0_A 57 HFYSRISNPTLNLLEARMASLEGG--EAGLALASGMGAITSTLWTLL--RPGDEVLLGNTLYGCTFAFLHHGIGE----- 127 (398)
T ss_dssp ------CCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHC--CTTCEEEEESSCCSHHHHHHHHTGGG-----
T ss_pred CcccCCCChHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHh--cCCCEEEEeCCCchhHHHHHHHHHHH-----
Confidence 334456788899999999999865 477888999999999999763 35678999999999865443211110
Q ss_pred CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777 210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI 289 (477)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI 289 (477)
.|+....++. . | ++++++.++ +++++|+++++++++|.+.+ +++|.++|++||+++|
T Consensus 128 ----~g~~~~~~~~------~-d----~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li 184 (398)
T 1gc0_A 128 ----FGVKLRHVDM------A-D----LQALEAAMT----PATRVIYFESPANPNMHMAD----IAGVAKIARKHGATVV 184 (398)
T ss_dssp ----GTCEEEEECT------T-C----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHGGGTCEEE
T ss_pred ----cCCEEEEECC------C-C----HHHHHHhcC----CCCeEEEEECCCCCCccccc----HHHHHHHHHHcCCEEE
Confidence 1222222211 0 1 477888775 47899999999999998776 9999999999999999
Q ss_pred EcCcccCccCCCCCCccccccCCCcceeeecccccC-ccce-EEEEeCHHHHH-hhcccccc-cCCCCcHHHHHHHHHHH
Q 011777 290 ADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGN-GLPL-GAVVTTPEIAN-VMAQKIQF-NTFGGNPVCSAGGLAVL 365 (477)
Q Consensus 290 ~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~-G~pi-g~v~~~~~~~~-~~~~~~~~-~t~~~~~~~~aaa~a~l 365 (477)
+||+|+.+. .+ ... .++....+.+++|.+++ |.|+ |++++++++++ .+....+. .+.+.|++.++++++++
T Consensus 185 ~D~~~~~~~-~~-~~~---~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 259 (398)
T 1gc0_A 185 VDNTYCTPY-LQ-RPL---ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGI 259 (398)
T ss_dssp EECTTTHHH-HC-CGG---GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHH
T ss_pred EECCCcccc-cC-Cch---hhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCCCCCHHHHHHHHhcc
Confidence 999998442 22 121 23555555578999996 6888 99999988665 45443333 34567899988888888
Q ss_pred HhhchhhHHHHHHHHHHHHHHHHHHHHH----hCCCc---------e-eeeccceeEEEEEeeCCCCCCccHHHHHHHHH
Q 011777 366 RVIDKERRQAHCADVGSHLLGRLRTLQE----RHDII---------G-DVRGRGLMVGMELVTDRKEKTPAKAETAVLFE 431 (477)
Q Consensus 366 ~~l~~~~~~~~~~~~~~~l~~~L~~l~~----~~~~~---------~-~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~ 431 (477)
+.+ +...++..++.+.+.+.|++... .++.+ . ..++.|.++.+++.. . .....+
T Consensus 260 ~~~--~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~--------~--~~~~~~ 327 (398)
T 1gc0_A 260 KTL--NLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG--------G--IGAGRR 327 (398)
T ss_dssp TTH--HHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETT--------H--HHHHHH
T ss_pred chH--HHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECC--------C--HHHHHH
Confidence 754 23445555666666666654210 00100 0 013568888887731 1 234555
Q ss_pred HHHHcCceeec---cC-------------------------CCCCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777 432 KLRELGVLVGK---GG-------------------------LHGNVFRIKPPMCFTKDDADFLVDALDYS 473 (477)
Q Consensus 432 ~l~~~Gv~v~~---~~-------------------------~~~~~iRi~p~~~~t~e~i~~~l~~l~~~ 473 (477)
.+.+.|+.+.. |+ ...+.+||+++...++++|+.+.++|+++
T Consensus 328 ~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 328 FMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp HHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 66677776643 21 11479999999999999999999998865
No 168
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.91 E-value=5.5e-23 Score=206.94 Aligned_cols=312 Identities=15% Similarity=0.106 Sum_probs=206.6
Q ss_pred CHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccC
Q 011777 114 HPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHG 193 (477)
Q Consensus 114 ~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG 193 (477)
++++++++.+++++..+ +..+...++++.++++++. +.+++++||++|++.+++.++ ..+++.|++..++|++
T Consensus 19 ~~~~~~a~~~~~~~~~~----~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~al~~~~~~~~-~~~gd~Vl~~~~~~~~ 91 (393)
T 1mdo_A 19 GAEELAAVKTVLDSGWI----TTGPKNQELEAAFCRLTGN--QYAVAVSSATAGMHIALMALG-IGEGDEVITPSMTWVS 91 (393)
T ss_dssp CHHHHHHHHHHHHHTCC----SSSHHHHHHHHHHHHHHCC--SEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCHH
T ss_pred CHHHHHHHHHHHhcCCc----CCChHHHHHHHHHHHHhCC--CcEEEecChHHHHHHHHHHcC-CCCCCEEEeCCCccHh
Confidence 58899999998876422 2456788999999999864 589999999999999998763 2356789999999998
Q ss_pred CcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchh
Q 011777 194 GSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGY 273 (477)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~ 273 (477)
........ |...+.++.... .+..| .+++++.++ +++++|++++. .|.+.+
T Consensus 92 ~~~~~~~~-------------g~~~~~v~~~~~-~~~~d----~~~l~~~l~----~~~~~v~~~~~---~G~~~~---- 142 (393)
T 1mdo_A 92 TLNMIVLL-------------GANPVMVDVDRD-TLMVT----PEHIEAAIT----PQTKAIIPVHY---AGAPAD---- 142 (393)
T ss_dssp HHHHHHHT-------------TCEEEEECBCTT-TCCBC----HHHHHHHCC----TTEEEECCBCG---GGCCCC----
T ss_pred HHHHHHHC-------------CCEEEEEeccCC-cCCCC----HHHHHHhcC----CCceEEEEeCC---CCCcCC----
Confidence 75433221 222222221110 11112 477888775 36788887763 454444
Q ss_pred HHHHHHHHHHhCcEEEEcCccc-CccCCCCCCccccccCCCcceeeec----ccccCccceEEEEeC-HHHHHhhccccc
Q 011777 274 LKLVYDIVRKAGGVCIADEVQT-GFGRTGSHYWGFETQGVIPDIVTMA----KGIGNGLPLGAVVTT-PEIANVMAQKIQ 347 (477)
Q Consensus 274 l~~l~~l~~~~gillI~DEv~~-gfgr~G~~~~~~~~~gv~pDivt~s----K~lg~G~pig~v~~~-~~~~~~~~~~~~ 347 (477)
+++|.++|++||+++|+||+|+ |+.+.+ .. .+. +|++++| |.+++| ++|+++++ +++++.+.....
T Consensus 143 ~~~i~~l~~~~~~~li~D~a~~~g~~~~~-~~-----~~~-~d~~~~S~~k~K~l~~~-~~g~~~~~~~~~~~~l~~~~~ 214 (393)
T 1mdo_A 143 LDAIYALGERYGIPVIEDAAHATGTSYKG-RH-----IGA-RGTAIFSFHAIKNITCA-EGGIVVTDNPQFADKLRSLKF 214 (393)
T ss_dssp HHHHHHHHHHHTCCBCEECTTCTTCEETT-EE-----TTS-SSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTB
T ss_pred HHHHHHHHHHcCCeEEEECccccCCeECC-ee-----cCC-CCeEEEeCCCCCccccc-cceEEEeCCHHHHHHHHHHHh
Confidence 8999999999999999999998 333334 22 232 7888665 998765 78999996 788776643211
Q ss_pred cc--------------------C----CCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCce--ee
Q 011777 348 FN--------------------T----FGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIG--DV 401 (477)
Q Consensus 348 ~~--------------------t----~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~--~v 401 (477)
.+ + +..+++.++++++.++.+ ++..++.+++.+++++.|.++.-+..... ..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 292 (393)
T 1mdo_A 215 HGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKL--DALNARRAAIAAQYHQAMADLPFQPLSLPSWEH 292 (393)
T ss_dssp TTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCE
T ss_pred cCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCCcccccCCCCCC
Confidence 10 1 234778777777776643 34566666677777777665310000000 12
Q ss_pred eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC-----------------------CCEEEEeCCCCC
Q 011777 402 RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH-----------------------GNVFRIKPPMCF 458 (477)
Q Consensus 402 ~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-----------------------~~~iRi~p~~~~ 458 (477)
++.+.++++.+..+. ......++.+.|.++||.+.++... .+.+|+++...+
T Consensus 293 ~~~~~~~~v~~~~~~-----~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~ 367 (393)
T 1mdo_A 293 IHAWHLFIIRVDEAR-----CGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDM 367 (393)
T ss_dssp ECCCSCEEEECCHHH-----HSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTC
T ss_pred CceeEEEEEEecccc-----cccCHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCC
Confidence 344557777763100 0012457888999999998875311 237999888889
Q ss_pred cHHHHHHHHHHHHHHHhh
Q 011777 459 TKDDADFLVDALDYSMSK 476 (477)
Q Consensus 459 t~e~i~~~l~~l~~~l~~ 476 (477)
|++|+++++++|+++++.
T Consensus 368 t~~~i~~~~~~l~~~~~~ 385 (393)
T 1mdo_A 368 TESDFDRVITALHQIAGQ 385 (393)
T ss_dssp CHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 999999999999998753
No 169
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.91 E-value=4.7e-23 Score=211.43 Aligned_cols=324 Identities=16% Similarity=0.120 Sum_probs=197.5
Q ss_pred CCCHHHHHHHHHHHhh-cccc--ccccC--Ch---HHHHHH-HHHHhhCCCCCCEEEE-eCChHHHHHHHHHHHHhccCC
Q 011777 112 HCHPDVLNAIFEQSKL-LQHA--TTIYL--HH---AIADFA-EALASKMPGNLKVVYF-VNSGTEANELAMLMARLSTGN 181 (477)
Q Consensus 112 h~~p~v~~Av~~~l~~-~~~~--~~~~~--~~---~~~~l~-~~La~~~~~~~~~v~~-~~sGseA~~~Al~~ar~~~~~ 181 (477)
+.+|+|++|+.+++.+ ..+. ...+. .+ ..++++ ++++++++. +.+.+ ++||++|++.+++.++. ++
T Consensus 56 ~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~--~~~~v~~~sGs~a~~~a~~~~~~--~G 131 (447)
T 3h7f_A 56 FVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGA--EFANVQPHSGAQANAAVLHALMS--PG 131 (447)
T ss_dssp CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC--SEEECCCSSHHHHHHHHHHHHCC--TT
T ss_pred CCCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCC--CceEEEeCCHHHHHHHHHHHhcC--CC
Confidence 3589999999988753 2111 11111 12 235666 889988865 44555 99999999999997754 56
Q ss_pred ceEEEEccCccCCc-ccc-cccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEe-c
Q 011777 182 LGMIALRNAYHGGS-SGT-IGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIA-E 258 (477)
Q Consensus 182 ~~ii~~~~~yhG~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~-e 258 (477)
+.|++.+++|+++. .+. ....+. .+..++.+.... .+..| +++++++++. .++++|++ .
T Consensus 132 d~Vl~~~~~~~~~~~~~~~~~~~g~----------~~~~~~~~~~~~-~~~~d----~~~l~~~i~~---~~~~~i~~~~ 193 (447)
T 3h7f_A 132 ERLLGLDLANGGHLTHGMRLNFSGK----------LYENGFYGVDPA-THLID----MDAVRATALE---FRPKVIIAGW 193 (447)
T ss_dssp CEEEEECGGGTCCGGGTCTTSHHHH----------SSEEEEECCCTT-TCSCC----HHHHHHHHHH---HCCSEEEEEC
T ss_pred CEEEecCcccccccchhhhhhhcCC----------eeEEEEcCcCcc-cCCcC----HHHHHHHHHh---cCCeEEEEcC
Confidence 78999999987732 221 111111 111222221100 01112 5788888852 23456666 5
Q ss_pred ccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcc-cCccCCCCCCccccccCCCccee--eecccccCccceEEEEeC
Q 011777 259 TIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQ-TGFGRTGSHYWGFETQGVIPDIV--TMAKGIGNGLPLGAVVTT 335 (477)
Q Consensus 259 pi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~-~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~G~pig~v~~~ 335 (477)
|++++++ ++++|+++|++||++||+||+| .|+.+.| ..... ..+ .|++ ++||+++ |++.|+++++
T Consensus 194 ~~~~~~~-------~l~~i~~l~~~~g~lli~Dea~~~g~~~~g-~~~~~-~~~--~di~~~s~sK~l~-G~~gG~i~~~ 261 (447)
T 3h7f_A 194 SAYPRVL-------DFAAFRSIADEVGAKLLVDMAHFAGLVAAG-LHPSP-VPH--ADVVSTTVHKTLG-GGRSGLIVGK 261 (447)
T ss_dssp SSCCSCC-------CHHHHHHHHHHHTCEEEEECTTTHHHHHTT-SSCCS-TTT--CSEEEEESSGGGC-CCSCEEEEEC
T ss_pred CCCCCcc-------CHHHHHHHHHHcCCEEEEECCchhhhhcCC-CCCCC-CCC--CcEEEecCCcCCC-CCCeEEEEEC
Confidence 6665432 4899999999999999999996 5554445 22211 112 3555 6789995 6788999999
Q ss_pred HHHHHhhcccccccCCCCc-HHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCCCceeee--ccceeEE
Q 011777 336 PEIANVMAQKIQFNTFGGN-PVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERHDIIGDVR--GRGLMVG 409 (477)
Q Consensus 336 ~~~~~~~~~~~~~~t~~~~-~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~--g~g~~~~ 409 (477)
+++++.+......++++++ ...++++.+++..+.+ +++.+++.++.+++.+.|.+...+.+.+..+. ..+.+++
T Consensus 262 ~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~ 341 (447)
T 3h7f_A 262 QQYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVL 341 (447)
T ss_dssp GGGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEE
T ss_pred HHHHHHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEE
Confidence 9988877654444444443 3335555555655433 34677788888888888766421111122221 2355666
Q ss_pred EEEeeCCCCCCccHHHHHHHHHHHHHcCceee----cc----CCCCCEEEEeCCCC----CcHHHHHHHHHHHHHHHhh
Q 011777 410 MELVTDRKEKTPAKAETAVLFEKLRELGVLVG----KG----GLHGNVFRIKPPMC----FTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 410 i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~----~~----~~~~~~iRi~p~~~----~t~e~i~~~l~~l~~~l~~ 476 (477)
+++.... .....+.+.|.++||++. ++ ....+.+||.++.. ++++|+++++++|++++++
T Consensus 342 ~~~~~~~-------~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~ 413 (447)
T 3h7f_A 342 VDLRDSP-------LDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALAT 413 (447)
T ss_dssp EECTTSS-------CCHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHS
T ss_pred EEcCCCC-------CCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 6653211 013456667777899988 33 12346799988765 6799999999999998853
No 170
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.91 E-value=1.3e-23 Score=208.71 Aligned_cols=336 Identities=13% Similarity=0.035 Sum_probs=201.7
Q ss_pred CEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc--ccccccC-ChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHH
Q 011777 96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ--HATTIYL-HHAIADFAEALASKMPGNLKVVYFVNSGTEANELAM 172 (477)
Q Consensus 96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~--~~~~~~~-~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al 172 (477)
|+|+|.++......+| .||.+.+++.++++... .....|. .+...+|+++|+++++. +..++++||++|++.++
T Consensus 3 ~~~~~~~~~~~~l~~~-~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~--~~~i~~~~G~~a~~~al 79 (357)
T 3lws_A 3 NRLRTSFQQTTGQISG-HGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLGM--DDAVFFPSGTMAQQVAL 79 (357)
T ss_dssp CHHHHHHHTCSEESSB-SSCCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHH
T ss_pred chhhhHHHhhcccccC-CCCCCHHHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHhCC--CcEEEecCcHHHHHHHH
Confidence 4556633333323344 47888888888777521 1112233 46788999999999865 55677799999999999
Q ss_pred HHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCe
Q 011777 173 LMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKV 252 (477)
Q Consensus 173 ~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~ 252 (477)
+.+... +.+.+|+..+.+|............ .+...++++... ..++ .++++++ . ++
T Consensus 80 ~~~~~~-gd~~~vi~~~~~~~~~~~~~~~~~~---------~g~~~~~v~~~~-~~~d------~~~l~~~-----~-~~ 136 (357)
T 3lws_A 80 RIWSDE-TDNRTVAYHPLCHLEIHEQDGLKEL---------HPIETILVGAAD-RLMT------LDEIKAL-----P-DI 136 (357)
T ss_dssp HHHHHH-HTCCEEEECTTCHHHHSSTTHHHHH---------SSCEEEECSCTT-SCCC------HHHHHTC-----C-SC
T ss_pred HHHhhc-CCCcEEEecccceeeeeccchhhhc---------cCcEEEEecCCC-CCcC------HHHHhcC-----c-Cc
Confidence 877553 2222566666666533221000000 123333333211 1111 3566554 1 26
Q ss_pred eEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccC--ccCCCCCCccccccCCCcc--eeeecccccCccc
Q 011777 253 AGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTG--FGRTGSHYWGFETQGVIPD--IVTMAKGIGNGLP 328 (477)
Q Consensus 253 a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g--fgr~G~~~~~~~~~gv~pD--ivt~sK~lg~G~p 328 (477)
++|++++.+|++|..+++++++++|.++|++||++||+||+|.. ++..|.....+. ...| +.++||++++...
T Consensus 137 ~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~---~~~d~~~~s~sK~~~~~~g 213 (357)
T 3lws_A 137 ACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA---GLFDSIYISFYKGLGGIAG 213 (357)
T ss_dssp SEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH---TTSSEEEEESSSTTCCSSC
T ss_pred ceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH---hcCCEEEEeccccCCCCce
Confidence 77888877776533677899999999999999999999998751 111121111111 1123 4489999964222
Q ss_pred eEEEEeCHHHHHhhcccc--cc-cCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCcee--eec
Q 011777 329 LGAVVTTPEIANVMAQKI--QF-NTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGD--VRG 403 (477)
Q Consensus 329 ig~v~~~~~~~~~~~~~~--~~-~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~--v~g 403 (477)
|++++++++++.+.... .+ +.+..++. ++++.++|+... + ..++..++.+++.+.|++ .+.+.. .+.
T Consensus 214 -g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~-~-~~~~~~~~~~~l~~~L~~----~~g~~~~~~~~ 285 (357)
T 3lws_A 214 -AILAGPAAFCQTARIWKRRYGGDLISLYPY-IVSADYYYELRK-D-RMGQYYEQAKQLAEQFNA----LPGVHTTPEVP 285 (357)
T ss_dssp -EEEEECHHHHHHHHHHHHHTTCCCSCCHHH-HHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHT----STTEEEESSSC
T ss_pred -EEEEcCHHHHHHHHHHHHHhcCCcccchHH-HHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHh----CCCCeeccCCC
Confidence 99999999988775321 22 23333444 445556666421 2 233445666666666654 333322 245
Q ss_pred cceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC---CCCEEEEeCC---CCCcHHHHHHHHHHHHHHH
Q 011777 404 RGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL---HGNVFRIKPP---MCFTKDDADFLVDALDYSM 474 (477)
Q Consensus 404 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---~~~~iRi~p~---~~~t~e~i~~~l~~l~~~l 474 (477)
.+.++++++... .......+.+.|.++||++.++.. ...++|++.. +..+++++++++++|.+++
T Consensus 286 ~~~~~~~~~~~~------~~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 286 VSNMFHLHFDGQ------AADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp SSSEEEEEEESC------HHHHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred cceEEEEEecCC------hHHHHHHHHHHHHhcCeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 677888887421 112346788899999999988732 1247898765 3468999999999998875
No 171
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4.3e-23 Score=214.62 Aligned_cols=323 Identities=11% Similarity=0.030 Sum_probs=206.2
Q ss_pred CCCHHHHHHHHHHHhhccccccc-c-----CChHHHHHHHHHHhhCCCC--CCEEEEeCChHHHHHHHHHHHHhcc----
Q 011777 112 HCHPDVLNAIFEQSKLLQHATTI-Y-----LHHAIADFAEALASKMPGN--LKVVYFVNSGTEANELAMLMARLST---- 179 (477)
Q Consensus 112 h~~p~v~~Av~~~l~~~~~~~~~-~-----~~~~~~~l~~~La~~~~~~--~~~v~~~~sGseA~~~Al~~ar~~~---- 179 (477)
|+++.+.+++.+++....+.... + ..+...+++++++++++.+ .+.+++++||++|+..+++.++.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~ 154 (497)
T 3mc6_A 75 HGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHR 154 (497)
T ss_dssp CCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcC
Confidence 45689999999998874332211 1 1234567888888888765 5689999999999999999887632
Q ss_pred C--CceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEe
Q 011777 180 G--NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIA 257 (477)
Q Consensus 180 ~--~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~ 257 (477)
| ++.|++..++|+.....+... +. .+..++... .....+ +++|+++++ +++++|++
T Consensus 155 g~~~~~Vi~~~~~h~~~~~~~~~~-G~----------~~~~v~~~~-~~~~~d------~~~l~~~i~----~~~~~v~~ 212 (497)
T 3mc6_A 155 GITEPEIIAPVTAHAGFDKAAYYF-GM----------KLRHVELDP-TTYQVD------LGKVKKFIN----KNTVLLVG 212 (497)
T ss_dssp CCSSCEEEEETTSCHHHHHHHHHS-CC----------EEEEECBCT-TTCSBC------TTTTGGGCC----SSEEEEEE
T ss_pred CCCCceEEEeCCccHHHHHHHHHc-CC----------eEEEEecCc-ccCcCC------HHHHHHHHh----hCCEEEEE
Confidence 2 357777777766543332222 11 122232211 011111 356777665 46889999
Q ss_pred cccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCC-------CCC-CccccccCCCcceee--ecccccCcc
Q 011777 258 ETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRT-------GSH-YWGFETQGVIPDIVT--MAKGIGNGL 327 (477)
Q Consensus 258 epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~-------G~~-~~~~~~~gv~pDivt--~sK~lg~G~ 327 (477)
+..++++|.+.+ +++|.++|++||+++|+||+|+++.+. |.. .+.....|+ |+++ ++|.+.+|.
T Consensus 213 ~~p~nptG~~~~----l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~--d~~~~s~~K~l~~~~ 286 (497)
T 3mc6_A 213 SAPNFPHGIADD----IEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGV--TSISCDTHKYGFAPK 286 (497)
T ss_dssp ETTCTTTCCCCS----CTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTC--CEEEEETTTTTCCCS
T ss_pred ECCCCCCCcCCC----HHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCC--cEEEECchhhcCCCC
Confidence 988888887766 789999999999999999999876432 100 133334454 5554 559888889
Q ss_pred ceEEEEeCHHHHHhhccc----cccc-----CC--CCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHH
Q 011777 328 PLGAVVTTPEIANVMAQK----IQFN-----TF--GGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQE 393 (477)
Q Consensus 328 pig~v~~~~~~~~~~~~~----~~~~-----t~--~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~ 393 (477)
++|+++++++.+...... ...+ ++ +.+....++..++++.+.. +++.++..++.+++++.|++.
T Consensus 287 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-- 364 (497)
T 3mc6_A 287 GSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQEN-- 364 (497)
T ss_dssp SCEEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred CceeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 999999987766544211 1111 11 1122334444455555444 345666777777777777662
Q ss_pred hCCCceee-eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHH
Q 011777 394 RHDIIGDV-RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDY 472 (477)
Q Consensus 394 ~~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~ 472 (477)
.+.+..+ .+.+.++.+... .....++.+.|.++||.+..+. ..+.+|++++ .+|++++++++++|++
T Consensus 365 -~~g~~~~~~~~~~~v~~~~~---------~~~~~~l~~~L~~~Gi~v~~~~-~~~~~ri~~~-~~t~e~i~~~~~~L~~ 432 (497)
T 3mc6_A 365 -IPDLDIMGNPRYSVISFSSK---------TLNIHELSDRLSKKGWHFNALQ-KPVALHMAFT-RLSAHVVDEICDILRT 432 (497)
T ss_dssp -CTTCEECSCCCSSEEEEECT---------TTTHHHHHHHHHTTTCBCEECC-SSCCEEEECC-TTTTCTHHHHHHHHHH
T ss_pred -CCCEEEecCCCeeEEEEeCC---------CCCHHHHHHHHHhCCEEEecCC-CCCeEEEEEe-CCCHHHHHHHHHHHHH
Confidence 1222211 234555555421 1125678899999999987653 3456899988 7899999999999999
Q ss_pred HHhh
Q 011777 473 SMSK 476 (477)
Q Consensus 473 ~l~~ 476 (477)
++++
T Consensus 433 ~l~~ 436 (497)
T 3mc6_A 433 TVQE 436 (497)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 172
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.91 E-value=1.2e-22 Score=209.91 Aligned_cols=316 Identities=15% Similarity=0.104 Sum_probs=206.0
Q ss_pred CCCCCHHHHHHHHHHHhhccccccccC--------ChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc---
Q 011777 110 CGHCHPDVLNAIFEQSKLLQHATTIYL--------HHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS--- 178 (477)
Q Consensus 110 lGh~~p~v~~Av~~~l~~~~~~~~~~~--------~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~--- 178 (477)
.+|.+|++++++.+++.. .+ .|. .+...+++++++++++.+. .+++++||++|+..|+++++.+
T Consensus 75 ~~~~~p~v~~~~~~~~~~---~~-~~~~~~~~~g~~~l~~~l~~~la~~~g~~~-~~~~~~ggt~a~~~al~~~~~~~~~ 149 (474)
T 1wyu_B 75 TMKYNPKLHEEAARLFAD---LH-PYQDPRTAQGALRLMWELGEYLKALTGMDA-ITLEPAAGAHGELTGILIIRAYHED 149 (474)
T ss_dssp CCCCCCHHHHHHHHTTSS---CC-TTSCGGGCHHHHHHHHHHHHHHHHHHTCSE-EECCCSSHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHh---cC-CCCchhhChHHHHHHHHHHHHHHHHHCCCc-eeecChHHHHHHHHHHHHHHHHHHh
Confidence 357789999998876221 11 121 2457788999999886543 4678899999999999888653
Q ss_pred ----cCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeE
Q 011777 179 ----TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAG 254 (477)
Q Consensus 179 ----~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~ 254 (477)
+++++||+.+ .+|+....+.... |...+.+|.......+ +++|+++++ +++++
T Consensus 150 ~Gd~~~r~~Vlv~~-~~h~~~~~~~~~~------------G~~vv~v~~~~~~~~d------~~~L~~~i~----~~t~~ 206 (474)
T 1wyu_B 150 RGEGRTRRVVLVPD-SAHGSNPATASMA------------GYQVREIPSGPEGEVD------LEALKRELG----PHVAA 206 (474)
T ss_dssp TTCTTTCCEEEEET-TSCTHHHHHHHHT------------TCEEEEECBCTTSSBC------HHHHHHHCS----TTEEE
T ss_pred cCCccCCCEEEEeC-CcChhhHHHHHHC------------CCEEEEecCCCCCCcC------HHHHHHhhC----CCceE
Confidence 1234777776 5556555443332 2222222211111112 578888875 46888
Q ss_pred EEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeee--cccccC-----cc
Q 011777 255 FIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTM--AKGIGN-----GL 327 (477)
Q Consensus 255 vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~--sK~lg~-----G~ 327 (477)
|++++.+ +.|.+. +.+++|.++|++||+++|+||+|..+ ..| . .....++ +|++++ +|.+++ |+
T Consensus 207 v~~~~pn-~~G~~~---~~l~~i~~l~~~~g~~li~Dea~~~~-~~g-~-~~~~~~g--~di~~~s~~K~~~~p~g~gG~ 277 (474)
T 1wyu_B 207 LMLTNPN-TLGLFE---RRILEISRLCKEAGVQLYYDGANLNA-IMG-W-ARPGDMG--FDVVHLNLHKTFTVPHGGGGP 277 (474)
T ss_dssp EEECSSC-TTSCCC---TTHHHHHHHHHHHTCEEEEEGGGGGG-TTT-T-CCHHHHT--CSEEECCTTTTTCCCCTTSCC
T ss_pred EEEECCC-CCcccC---CCHHHHHHHHHHcCCEEEEeCchhhh-hcc-C-CCcccCC--CcEEEEeCccccccCCCCCCC
Confidence 8888754 577652 34999999999999999999999643 233 1 1112223 688765 799963 36
Q ss_pred ceEEEEeCHHHHHhhccc-------------------ccccCCCCcHHHHHHHHHHHHhhchhhH---HHHHHHHHHHHH
Q 011777 328 PLGAVVTTPEIANVMAQK-------------------IQFNTFGGNPVCSAGGLAVLRVIDKERR---QAHCADVGSHLL 385 (477)
Q Consensus 328 pig~v~~~~~~~~~~~~~-------------------~~~~t~~~~~~~~aaa~a~l~~l~~~~~---~~~~~~~~~~l~ 385 (477)
++|++++++++++.+... ....++++|+++++++++.++.+..+.+ .+++.++.+++.
T Consensus 278 ~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~ 357 (474)
T 1wyu_B 278 GSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLK 357 (474)
T ss_dssp CCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988776521 0113345788889989888876544433 677778888888
Q ss_pred HHHHHHHHhCCCceeeecccee--EEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC---CCCEEEEeCCCCCcH
Q 011777 386 GRLRTLQERHDIIGDVRGRGLM--VGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL---HGNVFRIKPPMCFTK 460 (477)
Q Consensus 386 ~~L~~l~~~~~~~~~v~g~g~~--~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---~~~~iRi~p~~~~t~ 460 (477)
++|+++ .+..+. +.+.+ +++.+ .. .....++.+.|.++||++..... ..+++||+++..+|+
T Consensus 358 ~~L~~~--g~~~~~---~~~~~~~~~~~~-~~-------~~~~~~l~~~L~~~Gi~~~~~~~~~~~~~~lRis~~~~~t~ 424 (474)
T 1wyu_B 358 ELLKEK--GYRVPY---DGPSMHEFVAQP-PE-------GFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAK 424 (474)
T ss_dssp HHHHHT--TCBCSS---CSSCCSCEEEBC-ST-------TCCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCH
T ss_pred HHHhhc--CcEecC---CCCcceEEEEEc-CC-------CCCHHHHHHHHHHCCccccccccccccCCEEEEEeecCCCH
Confidence 888774 222211 11222 34433 10 11245788899999998632111 247899999988899
Q ss_pred HHHHHHHHHHHHHHh
Q 011777 461 DDADFLVDALDYSMS 475 (477)
Q Consensus 461 e~i~~~l~~l~~~l~ 475 (477)
+++++++++|+++++
T Consensus 425 e~id~~~~~L~~~~~ 439 (474)
T 1wyu_B 425 ETLEAFAEAMGALLK 439 (474)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998875
No 173
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.91 E-value=2.3e-23 Score=207.11 Aligned_cols=325 Identities=15% Similarity=0.055 Sum_probs=198.5
Q ss_pred CcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCce
Q 011777 104 GIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG 183 (477)
Q Consensus 104 g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ 183 (477)
+.+.+++| .||+|++|+.+.+.. ...+..+...+++++|+++++. +..++++||++|++.+++.+... +...
T Consensus 19 ~~~~~~~g-~~p~v~~ai~~~~~~----~~~~~~~~~~~l~~~la~~~~~--~~~i~~~~g~~a~~~a~~~~~~~-g~~~ 90 (359)
T 3pj0_A 19 GNGPRNVG-VLTEALQNIDDNLES----DIYGNGAVIEDFETKIAKILGK--QSAVFFPSGTMAQQIALRIWADR-KENR 90 (359)
T ss_dssp SSSCCBHH-HHHHHTTTSCTTCBC----CBTTBSHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHHHHH-HTCC
T ss_pred CCCccccC-CCHHHHHHHHhhccc----CcccCCHHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHHHhc-CCCc
Confidence 33334444 467888887763322 2223467789999999999865 45577799999999999987653 3334
Q ss_pred EEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCC
Q 011777 184 MIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGV 263 (477)
Q Consensus 184 ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~ 263 (477)
+|+..+.+|............ .|...+.++.. .... | +++++++ .+++++|++++.+++
T Consensus 91 vvi~~~~~~~~~~~~~~~~~~---------~g~~~~~v~~~-~~~~--d----~~~l~~~-----~~~~~~v~~~~p~n~ 149 (359)
T 3pj0_A 91 RVAYHPLSHLEIHEQDGLKEL---------QQITPLLLGTA-NQLL--T----IDDIKSL-----REPVSSVLIELPQRE 149 (359)
T ss_dssp EEEECTTCHHHHSSTTHHHHH---------HCCEEEECSCT-TSCC--C----HHHHHTC-----SSCCSEEEEESSBGG
T ss_pred EEEEeccceeeehhcchHHHh---------cCceEEecCCc-CCCc--C----HHHHHhc-----cCCceEEEEEecccC
Confidence 566666665433221111000 02222222221 1111 1 4666654 246788888877666
Q ss_pred CCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCcc--CCCCCCccccccCCCccee--eecccccCccceEEEEeCHHHH
Q 011777 264 GGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFG--RTGSHYWGFETQGVIPDIV--TMAKGIGNGLPLGAVVTTPEIA 339 (477)
Q Consensus 264 ~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfg--r~G~~~~~~~~~gv~pDiv--t~sK~lg~G~pig~v~~~~~~~ 339 (477)
+|...++.+++++|.++|++||++||+||+|..+. ..|.... + .....|++ ++||+++++.. |+++++++++
T Consensus 150 ~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~--~-~~~~~d~~~~s~sK~~~~~~g-g~~~~~~~l~ 225 (359)
T 3pj0_A 150 IGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAE--E-ICALFDSVYVSFYKGIGGIAG-AILAGNDDFV 225 (359)
T ss_dssp GTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHH--H-HHTTCSEEEEESSSTTCCSSC-EEEEECHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHH--H-hhccCCEEEEeccccCCCcce-EEEECCHHHH
Confidence 54467789999999999999999999999876332 1120111 1 11223555 78999986544 8888999999
Q ss_pred Hhhccc--ccc-cCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCcee--eeccceeEEEEEee
Q 011777 340 NVMAQK--IQF-NTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGD--VRGRGLMVGMELVT 414 (477)
Q Consensus 340 ~~~~~~--~~~-~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~--v~g~g~~~~i~~~~ 414 (477)
+.+... ..+ +++..++.+ +++.++++... +..++..++.+++.+.|+++ +.+.. .+..+.++++.+..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~-~a~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~~ 298 (359)
T 3pj0_A 226 QEAKIWKRRYGGDLISLYPYI-LSADYYFEKRI--GKMAEYFEAAKGLAERFNSC----SGVKTVPEVPVSNMFHVYFEN 298 (359)
T ss_dssp HHHHHHHHHTTCCCSCCHHHH-HHHHHHHHHHG--GGHHHHHHHHHHHHHHHHTS----TTEEEESSSCSSSEEEEEESS
T ss_pred HHHHHHHHHhCCCcchhHHHH-HHHHHHHHHHH--HHhHHHHHHHHHHHHHHhhC----CCceeeccCCcceEEEEEecC
Confidence 887642 122 333444444 44445665432 33445666677777766553 32322 23456677777632
Q ss_pred CCCCCCccHHHHHHHHHHHHHcCceeeccCCC----CCEEEEeCC---CCCcHHHHHHHHHHHHHHH
Q 011777 415 DRKEKTPAKAETAVLFEKLRELGVLVGKGGLH----GNVFRIKPP---MCFTKDDADFLVDALDYSM 474 (477)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~---~~~t~e~i~~~l~~l~~~l 474 (477)
+.......+.+.|.++||++.++..+ .+++|++.. ...+.+++++++++|.+++
T Consensus 299 ------~~~~~~~~l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~l 359 (359)
T 3pj0_A 299 ------SADEIGAILTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKEL 359 (359)
T ss_dssp ------CHHHHHHHHHHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred ------ccchhHHHHHHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhcC
Confidence 12233567889999999999987322 257888654 3368899999999998753
No 174
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.90 E-value=3.4e-22 Score=203.02 Aligned_cols=330 Identities=15% Similarity=0.060 Sum_probs=193.4
Q ss_pred EEeecCCcccccCCCCCHHHHHHHHHHHhh-ccccc--cc-c----CChHHHHHH-HHHHhhCCCCCCEE-EEeCChHHH
Q 011777 98 YLDAFAGIVTVSCGHCHPDVLNAIFEQSKL-LQHAT--TI-Y----LHHAIADFA-EALASKMPGNLKVV-YFVNSGTEA 167 (477)
Q Consensus 98 ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~-~~~~~--~~-~----~~~~~~~l~-~~La~~~~~~~~~v-~~~~sGseA 167 (477)
.+++.++.. +.||+|++|+.+++.. ..+.. .. + ..+...+++ +++++.++. +.+ ++++||++|
T Consensus 34 ~i~l~~~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~v~~~~Gs~a 106 (425)
T 3ecd_A 34 QVELIASEN-----IVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNA--GHANVQPHSGAQA 106 (425)
T ss_dssp SEECCTTCC-----CCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTC--SEEECCCSSHHHH
T ss_pred ceeeecccC-----CCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCC--CCceeecCchHHH
Confidence 466655442 3489999999998843 21111 01 1 112445555 677777754 344 459999999
Q ss_pred HHHHHHHHHhccCCceEEEEccCccCCc-ccccc-cccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHh
Q 011777 168 NELAMLMARLSTGNLGMIALRNAYHGGS-SGTIG-LTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHID 245 (477)
Q Consensus 168 ~~~Al~~ar~~~~~~~ii~~~~~yhG~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~ 245 (477)
++.+++.+ ..+++.|++.+++||+.. .+... ..+ .++..++.+.... .+..| +++|+++++
T Consensus 107 ~~~al~~~--~~~gd~Vi~~~~~~~~~~~~~~~~~~~g----------~~~~~~~~~~~~~-~~~~d----~~~l~~~i~ 169 (425)
T 3ecd_A 107 NGAVMLAL--AKPGDTVLGMSLDAGGHLTHGAKPALSG----------KWFNALQYGVSRD-TMLID----YDQVEALAQ 169 (425)
T ss_dssp HHHHHHHH--CCTTCEEEEECC----------------------------CEEEEECCCTT-TSSCC----HHHHHHHHH
T ss_pred HHHHHHHc--cCCCCEEEEcccccccceecchhhhhcc----------cceeeeecCCCcc-cCccC----HHHHHHHHh
Confidence 99999876 346788999999998832 22211 111 1122222221100 01112 578888886
Q ss_pred ccCCCCeeEEEec-ccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcc-cCccCCCCCCccccccCCCccee--eecc
Q 011777 246 FGTSGKVAGFIAE-TIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQ-TGFGRTGSHYWGFETQGVIPDIV--TMAK 321 (477)
Q Consensus 246 ~~~~~~~a~vi~e-pi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~-~gfgr~G~~~~~~~~~gv~pDiv--t~sK 321 (477)
. .++++|+++ |++| ....+++|.++|++||++||+||+| .|+.+.| ..+... . .+|++ ++||
T Consensus 170 ~---~~~~~v~~~~~~~~-------~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~-~~~~~~--~-~~di~~~s~sK 235 (425)
T 3ecd_A 170 Q---HKPSLIIAGFSAYP-------RKLDFARFRAIADSVGAKLMVDMAHIAGVIAAG-RHANPV--E-HAHVVTSTTHK 235 (425)
T ss_dssp H---HCCSEEEEECSCCC-------SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTT-SSCCGG--G-TCSEEEEESSG
T ss_pred h---cCCcEEEEccccCC-------CcCCHHHHHHHHHHcCCEEEEECcChHhhhhcc-cccCch--h-cCcEEEecCCc
Confidence 2 246777777 4443 2344899999999999999999995 5555555 322211 1 14665 5679
Q ss_pred cccCccceEEEEeC-HHHHHhhccccccc-CCCCcHHHHHHHHHHHHh-hch--hhHHHHHHHHHHHHHHHHHHHHHhCC
Q 011777 322 GIGNGLPLGAVVTT-PEIANVMAQKIQFN-TFGGNPVCSAGGLAVLRV-IDK--ERRQAHCADVGSHLLGRLRTLQERHD 396 (477)
Q Consensus 322 ~lg~G~pig~v~~~-~~~~~~~~~~~~~~-t~~~~~~~~aaa~a~l~~-l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~ 396 (477)
++ +|+++|+++++ +++.+.+......+ +.+.++..++++.+++.. +++ +++.++++++.+++++.|.+. ...
T Consensus 236 ~l-~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~ 312 (425)
T 3ecd_A 236 TL-RGPRGGFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG--GVD 312 (425)
T ss_dssp GG-CCCSCEEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT--TCE
T ss_pred cc-CCCCcEEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC--CCe
Confidence 99 45688999998 56777665433222 223344444444444433 333 356778888888888888763 111
Q ss_pred CceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceee----ccC----CCCCEEEEeCCCCCc----HHHHH
Q 011777 397 IIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVG----KGG----LHGNVFRIKPPMCFT----KDDAD 464 (477)
Q Consensus 397 ~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~----~~~----~~~~~iRi~p~~~~t----~e~i~ 464 (477)
... ..+.+.++++.+.... .....+.+.|.++||++. |+. ...+.+|++++...+ +++++
T Consensus 313 ~~~-~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~ 384 (425)
T 3ecd_A 313 LVT-GGTDNHLLLVDLRPKG-------LKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFR 384 (425)
T ss_dssp EGG-GSCSSSEEEEECGGGT-------CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHH
T ss_pred ecc-CCCCceEEEEEeCCCC-------CCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHH
Confidence 111 1135667777763211 124567788888999998 431 123589998665554 99999
Q ss_pred HHHHHHHHHHhh
Q 011777 465 FLVDALDYSMSK 476 (477)
Q Consensus 465 ~~l~~l~~~l~~ 476 (477)
+++++|++++++
T Consensus 385 ~~~~~l~~~l~~ 396 (425)
T 3ecd_A 385 EVGRLILEVFEA 396 (425)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999988753
No 175
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.90 E-value=4.2e-23 Score=206.20 Aligned_cols=313 Identities=15% Similarity=0.100 Sum_probs=200.5
Q ss_pred cCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEc
Q 011777 109 SCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALR 188 (477)
Q Consensus 109 ~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~ 188 (477)
.+|++++.+.+++.+++.+.......+..+...++++.++++++. +.+++++||++|++.|++.++ ..+++.|++..
T Consensus 6 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~l~~~la~~~~~--~~~~~~~sGt~al~~al~~~~-~~~gd~Vi~~~ 82 (367)
T 3nyt_A 6 DLKNQQARIKDKIDAGIQRVLRHGQYILGPEVTELEDRLADFVGA--KYCISCANGTDALQIVQMALG-VGPGDEVITPG 82 (367)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHTT-CCTTCEEEEES
T ss_pred cccccccccCHHHHHHHHHHHhcCCccCChHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHhC-CCCcCEEEECC
Confidence 345555545444444443321111223567788999999999865 589999999999999999764 24567899999
Q ss_pred cCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeee
Q 011777 189 NAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVE 268 (477)
Q Consensus 189 ~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~ 268 (477)
++|++........+ ...+.++.... .+..| +++++++++ +++++|+.++ ..|...
T Consensus 83 ~~~~~~~~~~~~~G-------------~~~~~~~~~~~-~~~~d----~~~l~~~i~----~~~~~v~~~~---~~G~~~ 137 (367)
T 3nyt_A 83 FTYVATAETVALLG-------------AKPVYVDIDPR-TYNLD----PQLLEAAIT----PRTKAIIPVS---LYGQCA 137 (367)
T ss_dssp SSCTHHHHHHHHTT-------------CEEEEECBCTT-TCSBC----GGGTGGGCC----TTEEEECCBC---GGGCCC
T ss_pred CccHHHHHHHHHcC-------------CEEEEEecCCc-cCCcC----HHHHHHhcC----cCCcEEEeeC---CccChh
Confidence 99988665543332 11111111100 01111 356766664 4788888443 345444
Q ss_pred CCchhHHHHHHHHHHhCcEEEEcCccc-CccCCCCCCccccccCCCcceeeec----ccccC-ccceEEEEe-CHHHHHh
Q 011777 269 LAPGYLKLVYDIVRKAGGVCIADEVQT-GFGRTGSHYWGFETQGVIPDIVTMA----KGIGN-GLPLGAVVT-TPEIANV 341 (477)
Q Consensus 269 ~~~~~l~~l~~l~~~~gillI~DEv~~-gfgr~G~~~~~~~~~gv~pDivt~s----K~lg~-G~pig~v~~-~~~~~~~ 341 (477)
+ +++|.++|++||+++|+||+|+ |..+.| ...+...|++++| |.+++ |. .|++++ ++++.+.
T Consensus 138 ~----~~~i~~la~~~~~~li~D~a~~~g~~~~~------~~~~~~~di~~~Sf~~~K~l~~~g~-gg~~~~~~~~l~~~ 206 (367)
T 3nyt_A 138 D----FDAINAIASKYGIPVIEDAAQSFGASYKG------KRSCNLSTVACTSFFPSAPLGCYGD-GGAIFTNDDELATA 206 (367)
T ss_dssp C----HHHHHHHHHHTTCCBEEECTTTTTCEETT------EETTSSSSEEEEECCTTSSSCCSSC-CEEEEESCHHHHHH
T ss_pred h----HHHHHHHHHHcCCEEEEECccccCCeECC------eeccCCCCEEEEECCCCCcCCCcCc-eeEEEeCCHHHHHH
Confidence 4 9999999999999999999997 232333 1222333888776 99998 76 788888 4777766
Q ss_pred hccccc------------ccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCcee-eeccceeE
Q 011777 342 MAQKIQ------------FNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGD-VRGRGLMV 408 (477)
Q Consensus 342 ~~~~~~------------~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~-v~g~g~~~ 408 (477)
+..... +.++..+++.++++++.++.+ +++.++.+++.+++++.|.++....+.... ......++
T Consensus 207 ~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~ 284 (367)
T 3nyt_A 207 IRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIF--EEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQY 284 (367)
T ss_dssp HHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSE
T ss_pred HHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEE
Confidence 643221 346778899999998888765 456677788888888888776211111100 01111122
Q ss_pred EEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC--------C--------------CCEEEEeCCCCCcHHHHHHH
Q 011777 409 GMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL--------H--------------GNVFRIKPPMCFTKDDADFL 466 (477)
Q Consensus 409 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--------~--------------~~~iRi~p~~~~t~e~i~~~ 466 (477)
.+.+ + ....+.+.|.++||.+..... + ...+|+......|++|++++
T Consensus 285 ~~~~--------~---~~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v 353 (367)
T 3nyt_A 285 TVRM--------D---NRESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKII 353 (367)
T ss_dssp EEEC--------S---SHHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHH
T ss_pred EEEe--------C---CHHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHH
Confidence 2222 1 145788899999998865421 0 24789988888999999999
Q ss_pred HHHHHHH
Q 011777 467 VDALDYS 473 (477)
Q Consensus 467 l~~l~~~ 473 (477)
++.+.+.
T Consensus 354 ~~~~~~~ 360 (367)
T 3nyt_A 354 CAALTNL 360 (367)
T ss_dssp HHHHHC-
T ss_pred HHHHHHH
Confidence 9998754
No 176
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.90 E-value=5.7e-22 Score=205.96 Aligned_cols=337 Identities=13% Similarity=0.069 Sum_probs=207.4
Q ss_pred CHHHHHHHHHHHhhcc------ccccccCChHHHHHHHHHHhhCC---CCCCEEEEeCChHHHHHHHHHHHHhccC---C
Q 011777 114 HPDVLNAIFEQSKLLQ------HATTIYLHHAIADFAEALASKMP---GNLKVVYFVNSGTEANELAMLMARLSTG---N 181 (477)
Q Consensus 114 ~p~v~~Av~~~l~~~~------~~~~~~~~~~~~~l~~~La~~~~---~~~~~v~~~~sGseA~~~Al~~ar~~~~---~ 181 (477)
+.++.+++.+.+.... +....+..+.+.++++.+.++.+ .+.++|++|+|+++|+..++++... .+ +
T Consensus 103 P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~-~gd~~~ 181 (498)
T 3ihj_A 103 PEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVS-GGGKSR 181 (498)
T ss_dssp CHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCC-CCGGGS
T ss_pred CHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcC-CCCCCC
Confidence 5667777777776532 22223334567778888876642 4567899999999999999986543 22 3
Q ss_pred ceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCC-CeeEEEeccc
Q 011777 182 LGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG-KVAGFIAETI 260 (477)
Q Consensus 182 ~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~-~~a~vi~epi 260 (477)
+.|++..++|+.+....... |...+.++......|+.| +++|++.++..... ++++|++...
T Consensus 182 d~Vlv~~p~y~~~~~~~~~~-------------g~~~v~~~~~~~~~~~~d----~~~le~~l~~~~~~~~~k~i~l~np 244 (498)
T 3ihj_A 182 TGVMIPIPQYPLYSAVISEL-------------DAIQVNYYLDEENCWALN----VNELRRAVQEAKDHCDPKVLCIINP 244 (498)
T ss_dssp EEEEEEESCCTHHHHHHHHT-------------TCEEEEEECBGGGTTBCC----HHHHHHHHHHHTTTSEEEEEEEESS
T ss_pred CEEEEeCCCchhHHHHHHHc-------------CCEEEEeeccccccCCCC----HHHHHHHHHhhhccCCCeEEEEECC
Confidence 48999999998775544332 222222222111112222 57888888732111 4666666555
Q ss_pred CCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCC-CCcccccc----C------C-Ccceeeecccc-c-Cc
Q 011777 261 QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS-HYWGFETQ----G------V-IPDIVTMAKGI-G-NG 326 (477)
Q Consensus 261 ~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~-~~~~~~~~----g------v-~pDivt~sK~l-g-~G 326 (477)
+|++| .+++.+.+++|.++|++||++||+||+|..+.+.+. .+..+... + + ..-+.+|||.+ | .|
T Consensus 245 ~NPTG-~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G 323 (498)
T 3ihj_A 245 GNPTG-QVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECG 323 (498)
T ss_dssp CTTTC-CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSS
T ss_pred CCCCC-CcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcc
Confidence 66777 456888899999999999999999999998766541 12222110 0 1 01133789999 5 69
Q ss_pred cceEEEE---eCHHHHHhhcccccccCCCCcHHHHHHHHHHHHh-----------hch-hhHHHHHHHHHHHHHHHHHHH
Q 011777 327 LPLGAVV---TTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRV-----------IDK-ERRQAHCADVGSHLLGRLRTL 391 (477)
Q Consensus 327 ~pig~v~---~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~-----------l~~-~~~~~~~~~~~~~l~~~L~~l 391 (477)
+|+||++ .++++++.+..... ...+.+.++++++.++++. +++ +...++++++.+++.+.|++
T Consensus 324 ~R~G~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~- 401 (498)
T 3ihj_A 324 YRGGYMEVINLHPEIKGQLVKLLS-VRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQ- 401 (498)
T ss_dssp SCCEEEEEESCCHHHHHHHHHHHH-HSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred cceEEEEEecCCHHHHHHHHHHHh-ccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 9999998 68999888765432 4456788888877776641 111 22334445555555555543
Q ss_pred HHhCCCceeeeccc-eeEEEEEeeCCCCCC---ccHHHHHH--HHHHHHHcCceeeccCCCC-----CEEEEeCCCCCcH
Q 011777 392 QERHDIIGDVRGRG-LMVGMELVTDRKEKT---PAKAETAV--LFEKLRELGVLVGKGGLHG-----NVFRIKPPMCFTK 460 (477)
Q Consensus 392 ~~~~~~~~~v~g~g-~~~~i~~~~~~~~~~---~~~~~~~~--~~~~l~~~Gv~v~~~~~~~-----~~iRi~p~~~~t~ 460 (477)
++.+......| +++++.+..+..... ......+. +.+.|.++||.+.++..++ +++|+++ ..++
T Consensus 402 ---~~g~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~--~~~~ 476 (498)
T 3ihj_A 402 ---VPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTI--LPPV 476 (498)
T ss_dssp ---STTEECCCCCBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEEC--CSCH
T ss_pred ---CCCcEecCCCeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEe--CCCH
Confidence 44444444454 445555531100000 00000122 3556677899999874432 4899976 4899
Q ss_pred HHHHHHHHHHHHHHhh
Q 011777 461 DDADFLVDALDYSMSK 476 (477)
Q Consensus 461 e~i~~~l~~l~~~l~~ 476 (477)
+++++++++|.+++++
T Consensus 477 e~l~~~i~~L~~~~~~ 492 (498)
T 3ihj_A 477 EKLKTVLQKVKDFHIN 492 (498)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988764
No 177
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.90 E-value=2.2e-23 Score=211.59 Aligned_cols=319 Identities=15% Similarity=0.076 Sum_probs=188.4
Q ss_pred CCCHHHHHHHHHHHhhcc---ccc-----cccCChHHHH-HHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCc
Q 011777 112 HCHPDVLNAIFEQSKLLQ---HAT-----TIYLHHAIAD-FAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNL 182 (477)
Q Consensus 112 h~~p~v~~Av~~~l~~~~---~~~-----~~~~~~~~~~-l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~ 182 (477)
+.||+|++|+.+++.... +.. .....+...+ .++++++.++.+.+.+ +++||++|++.+++.+. .+++
T Consensus 41 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v-~~~sGs~a~~~a~~~~~--~~gd 117 (420)
T 3gbx_A 41 YTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANV-QPHSGSQANFAVYTALL--QPGD 117 (420)
T ss_dssp CCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEEC-CCSSHHHHHHHHHHHHC--CTTC
T ss_pred CCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCcee-EecCcHHHHHHHHHHhc--CCCC
Confidence 369999999999885321 111 1111233344 4478888876654444 46778999999998763 3567
Q ss_pred eEEEEccCccCCccccc--ccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEec-c
Q 011777 183 GMIALRNAYHGGSSGTI--GLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAE-T 259 (477)
Q Consensus 183 ~ii~~~~~yhG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~e-p 259 (477)
.|++..+.|++...... ...+. ++..++.+.. ..+..| +++|+++++. +++++|+++ |
T Consensus 118 ~v~~~~~~~~~~~~~~~~~~~~g~----------~~~~~~~~~~--~~~~~d----~~~l~~~i~~---~~~~~v~~~~~ 178 (420)
T 3gbx_A 118 TVLGMNLAQGGHLTHGSPVNFSGK----------LYNIVPYGID--ESGKID----YDEMAKLAKE---HKPKMIIGGFS 178 (420)
T ss_dssp EEEEEEEC------------CHHH----------HSEEEEEEEC--TTCSCC----HHHHHHHHHH---HCCSEEEECCT
T ss_pred EEEecchhhcceeccchhhhhccc----------ceeEEeccCC--ccCCcC----HHHHHHHHHh---cCCeEEEEecC
Confidence 78887777765321111 11110 1122221111 111112 5788888863 246777775 4
Q ss_pred cCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc-CccCCCCCCccccccCCCcceee--ecccccCccceEEEEeCH
Q 011777 260 IQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT-GFGRTGSHYWGFETQGVIPDIVT--MAKGIGNGLPLGAVVTTP 336 (477)
Q Consensus 260 i~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~pig~v~~~~ 336 (477)
+++ ...+ +++|+++|++||++||+||+|+ |+.+.| .+... . . .+|+++ +||+++ |.+.|++++++
T Consensus 179 ~~~---~~~~----l~~l~~l~~~~~~~li~De~~~~~~~~~~-~~~~~-~-~-~~di~~~s~sK~~~-g~~gg~~~~~~ 246 (420)
T 3gbx_A 179 AYS---GVVD----WAKMREIADSIGAYLFVDMAHVAGLIAAG-VYPNP-V-P-HAHVVTTTTHKTLA-GPRGGLILAKG 246 (420)
T ss_dssp TCC---SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHTT-SSCCS-T-T-TSSEEEEESSGGGC-SCSCEEEEESS
T ss_pred ccC---CccC----HHHHHHHHHHcCCEEEEECCcchhceecc-cCCcc-c-c-cCCEEEeecccCCC-CCCceEEEEcC
Confidence 442 2333 8999999999999999999974 555555 22211 1 1 278876 679997 44559999987
Q ss_pred ---HHHHhhcccccccCCCCc-HHHHHHHHHHHHhh-ch--hhHHHHHHHHHHHHHHHHHHHHHhCCCceeee--cccee
Q 011777 337 ---EIANVMAQKIQFNTFGGN-PVCSAGGLAVLRVI-DK--ERRQAHCADVGSHLLGRLRTLQERHDIIGDVR--GRGLM 407 (477)
Q Consensus 337 ---~~~~~~~~~~~~~t~~~~-~~~~aaa~a~l~~l-~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~--g~g~~ 407 (477)
++.+.+....+.++++.+ ...++++.+++..+ ++ +++.+++.++.+++++.|.+. +. ..+. ..+.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~-~~~~~~~~~~~ 321 (420)
T 3gbx_A 247 GDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR----GY-KVVSGGTENHL 321 (420)
T ss_dssp CCHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT----TC-EEGGGSCSSSE
T ss_pred CcHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc----CC-eeccCCCCCeE
Confidence 787777654444444333 34444434344433 22 356777888888888887763 21 1122 35667
Q ss_pred EEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeec-------cCCC-CCEEEEeCCCC----CcHHHHHHHHHHHHHHHh
Q 011777 408 VGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGK-------GGLH-GNVFRIKPPMC----FTKDDADFLVDALDYSMS 475 (477)
Q Consensus 408 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~-------~~~~-~~~iRi~p~~~----~t~e~i~~~l~~l~~~l~ 475 (477)
+++.+.... .....+.+.|.++||++.+ +..+ .+.+||+++.. .+++++++++++|+++++
T Consensus 322 ~~~~~~~~~-------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~ 394 (420)
T 3gbx_A 322 FLLDLVDKN-------LTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLD 394 (420)
T ss_dssp EEEECGGGT-------CCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCC-------CCHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHh
Confidence 777763211 1245677888889999987 2222 35699998766 458999999999999876
Q ss_pred h
Q 011777 476 K 476 (477)
Q Consensus 476 ~ 476 (477)
+
T Consensus 395 ~ 395 (420)
T 3gbx_A 395 N 395 (420)
T ss_dssp T
T ss_pred C
Confidence 4
No 178
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.90 E-value=2.9e-22 Score=202.87 Aligned_cols=286 Identities=14% Similarity=0.033 Sum_probs=191.4
Q ss_pred cCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccc---cccccCCCCCCCC
Q 011777 135 YLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGT---IGLTALNTWKYPI 211 (477)
Q Consensus 135 ~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~---~~~~~~~~~~~~~ 211 (477)
..++...+++++++++++. +.+++++||++|+..+++... .+++.|++.++.|++..... ...
T Consensus 59 ~~~~~~~~l~~~ia~~~g~--~~~i~~~~g~~ai~~~~~~l~--~~gd~Vl~~~~~y~~~~~~~~~~~~~---------- 124 (404)
T 1e5e_A 59 LGNPTVSNLEGKIAFLEKT--EACVATSSGMGAIAATVLTIL--KAGDHLISDECLYGCTHALFEHALTK---------- 124 (404)
T ss_dssp TCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHC--CTTCEEEEESCCCHHHHHHHHTHHHH----------
T ss_pred CcChHHHHHHHHHHHHhCC--CcEEEeCChHHHHHHHHHHHh--CCCCEEEEeCCCchhHHHHHHHHHHH----------
Confidence 4467788999999999865 478899999999999998653 35678999999998754411 111
Q ss_pred CCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHH-hCcEEEE
Q 011777 212 PQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRK-AGGVCIA 290 (477)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~-~gillI~ 290 (477)
.|...+.++.. | .+++++.++ +++++|++++++|++|.+.+ +++|.++|++ ||+++|+
T Consensus 125 --~g~~~~~v~~~-------d----~~~l~~~i~----~~t~~v~l~~p~NptG~v~~----l~~i~~la~~~~~~~li~ 183 (404)
T 1e5e_A 125 --FGIQVDFINTA-------I----PGEVKKHMK----PNTKIVYFETPANPTLKIID----MERVCKDAHSQEGVLVIA 183 (404)
T ss_dssp --TTCEEEEECTT-------S----TTHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHTSTTCEEEE
T ss_pred --cCCEEEEECCC-------C----HHHHHHhcC----CCCcEEEEECCCCCCCcccC----HHHHHHHHHhhcCCEEEE
Confidence 12222222211 1 367887775 46889999998899997775 9999999999 9999999
Q ss_pred cCcccCccCCCCCCccccccCCCcceeeecccccC-ccce-EEEEeCHHHHH-hhccccccc-CCCCcHHHHHHHHHHHH
Q 011777 291 DEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGN-GLPL-GAVVTTPEIAN-VMAQKIQFN-TFGGNPVCSAGGLAVLR 366 (477)
Q Consensus 291 DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~-G~pi-g~v~~~~~~~~-~~~~~~~~~-t~~~~~~~~aaa~a~l~ 366 (477)
||+|+.+.+. ..+ + ++....+.++||.+++ |+|+ |++++++++++ .+....... +.+.+++.+.++.++++
T Consensus 184 De~~~~~~~~--~~~--~-~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~ 258 (404)
T 1e5e_A 184 DNTFCSPMIT--NPV--D-FGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLS 258 (404)
T ss_dssp ECTTTCTTTC--CGG--G-GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHT
T ss_pred ECCCchhhhC--Ccc--c-cCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhHh
Confidence 9999976432 122 2 3443334478999996 7998 99999999887 776654433 45678999999888887
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHHH----HhCCCce----------eeeccceeEEEEEeeCCCCCCccHHHHHHHHHH
Q 011777 367 VIDKERRQAHCADVGSHLLGRLRTLQ----ERHDIIG----------DVRGRGLMVGMELVTDRKEKTPAKAETAVLFEK 432 (477)
Q Consensus 367 ~l~~~~~~~~~~~~~~~l~~~L~~l~----~~~~~~~----------~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~ 432 (477)
.+ +...++..++.+.+.+.+++.. ..++.+. ..++.|.|+.+++.. . .....+.
T Consensus 259 ~~--~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~--------~--~~~~~~~ 326 (404)
T 1e5e_A 259 TL--NIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKS--------G--FEGAKKL 326 (404)
T ss_dssp TH--HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETT--------H--HHHHHHH
T ss_pred HH--HHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCC--------C--HHHHHHH
Confidence 43 2233444445555544444321 0011110 123458888887621 1 2345556
Q ss_pred HHHcCceeecc--C--------------------------CCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 433 LRELGVLVGKG--G--------------------------LHGNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 433 l~~~Gv~v~~~--~--------------------------~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
+.+.||++... | ...+++||+++. |+++++++.|++++++
T Consensus 327 l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~----e~~~~li~~l~~al~~ 394 (404)
T 1e5e_A 327 LDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADFKQGLDA 394 (404)
T ss_dssp HHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHHH
T ss_pred HHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHHHH
Confidence 67778854321 1 114789998876 7888888888887753
No 179
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.90 E-value=2.6e-22 Score=200.50 Aligned_cols=309 Identities=13% Similarity=0.054 Sum_probs=199.4
Q ss_pred CCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHh-ccCCceEEEEccC
Q 011777 112 HCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARL-STGNLGMIALRNA 190 (477)
Q Consensus 112 h~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~-~~~~~~ii~~~~~ 190 (477)
..+|++++++.++++...+ ++.+...++++.|+++++. +++++++||++|++.+++.++. ..++++|++..++
T Consensus 10 ~~~~~v~~a~~~~~~~~~~----~~~~~~~~l~~~la~~~~~--~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~~ 83 (375)
T 2fnu_A 10 CLDKEDKKAVLEVLNSKQL----TQGKRSLLFEEALCEFLGV--KHALVFNSATSALLTLYRNFSEFSADRNEIITTPIS 83 (375)
T ss_dssp CCCHHHHHHHHHHHTSSCC----SSSHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSS
T ss_pred CCCHHHHHHHHHHHHcCcc----cCChHHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHhcccCCCCCEEEECCCc
Confidence 3589999999998875321 2356678999999999865 4899999999999999997631 2356789999999
Q ss_pred ccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCC
Q 011777 191 YHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELA 270 (477)
Q Consensus 191 yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~ 270 (477)
||+........ |...+.++......++ ++++++.++ +++++|++... +|.+.+
T Consensus 84 ~~~~~~~~~~~-------------g~~~~~~~~~~~~~~d------~~~l~~~i~----~~~~~v~~~~~---tG~~~~- 136 (375)
T 2fnu_A 84 FVATANMLLES-------------GYTPVFAGIKNDGNID------ELALEKLIN----ERTKAIVSVDY---AGKSVE- 136 (375)
T ss_dssp CTHHHHHHHHT-------------TCEEEECCBCTTSSBC------GGGSGGGCC----TTEEEEEEECG---GGCCCC-
T ss_pred cHhHHHHHHHC-------------CCEEEEeccCCCCCCC------HHHHHhhcC----cCceEEEEeCC---cCCccC-
Confidence 99876544332 2222222111111111 356666554 35666555443 566655
Q ss_pred chhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCC--Ccceeeec--ccccCccceEEEEe-C-HHHHHhhcc
Q 011777 271 PGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGV--IPDIVTMA--KGIGNGLPLGAVVT-T-PEIANVMAQ 344 (477)
Q Consensus 271 ~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv--~pDivt~s--K~lg~G~pig~v~~-~-~~~~~~~~~ 344 (477)
+++|.++|++||+++|+||+|+.+ ... .....+. ..++.++| |.++.| +|++++ + +++++.+..
T Consensus 137 ---l~~i~~l~~~~~~~li~D~a~~~~-~~~----~~~~~~~~~~i~~~s~s~~K~~~~g--~g~~~~~~~~~~~~~~~~ 206 (375)
T 2fnu_A 137 ---VESVQKLCKKHSLSFLSDSSHALG-SEY----QNKKVGGFALASVFSFHAIKPITTA--EGGAVVTNDSELHEKMKL 206 (375)
T ss_dssp ---HHHHHHHHHHHTCEEEEECTTCTT-CEE----TTEETTSSSSEEEEECCTTSSSCCS--SCEEEEESCHHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCEEEEECccccC-CeE----CCeeccccCCeEEEeCCCCCCcccc--CceEEEeCCHHHHHHHHH
Confidence 899999999999999999999733 211 1111222 23455788 999654 777777 4 677766543
Q ss_pred ccc----------------ccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceee------e
Q 011777 345 KIQ----------------FNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDV------R 402 (477)
Q Consensus 345 ~~~----------------~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v------~ 402 (477)
... +.+++.+++.+++++..++.+ ++..++.+++.+++.+.|+++ +.+... +
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~ 280 (375)
T 2fnu_A 207 FRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKA--PFLMQKREEAALTYDRIFKDN----PYFTPLHPLLKDK 280 (375)
T ss_dssp HTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTC----SSEEESGGGCSSC
T ss_pred HHhcCCccccccccccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC----CCccccCCCCCCC
Confidence 221 112355677776666554433 456677777777777777653 212111 1
Q ss_pred ccceeEEEEEeeCCCCCCccHH-HHHHHHHHHHHcCceeeccCC-------C----------------CCEEEEeCCCCC
Q 011777 403 GRGLMVGMELVTDRKEKTPAKA-ETAVLFEKLRELGVLVGKGGL-------H----------------GNVFRIKPPMCF 458 (477)
Q Consensus 403 g~g~~~~i~~~~~~~~~~~~~~-~~~~~~~~l~~~Gv~v~~~~~-------~----------------~~~iRi~p~~~~ 458 (477)
+.+.++++.+... .. ....+.+.|.++||.+..... + .+++||+++..+
T Consensus 281 ~~~~~~~~~~~~~-------~~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~ 353 (375)
T 2fnu_A 281 SSNHLYPILMHQK-------FFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANL 353 (375)
T ss_dssp CCCSCEEEEECGG-------GGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTC
T ss_pred cceEEEEEEeCcc-------ccchHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCC
Confidence 2234456666311 01 245788899999999872100 0 168999998889
Q ss_pred cHHHHHHHHHHHHHHHhh
Q 011777 459 TKDDADFLVDALDYSMSK 476 (477)
Q Consensus 459 t~e~i~~~l~~l~~~l~~ 476 (477)
|++|+++++++|++++++
T Consensus 354 t~~~i~~~~~~l~~~~~~ 371 (375)
T 2fnu_A 354 NLESVQNIAHSVLKTFES 371 (375)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999998764
No 180
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.90 E-value=7.5e-22 Score=198.78 Aligned_cols=310 Identities=14% Similarity=0.026 Sum_probs=199.1
Q ss_pred CCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEcc
Q 011777 110 CGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRN 189 (477)
Q Consensus 110 lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~ 189 (477)
+.+.+++..+++.+. ....+....+.++...+++++|+++++. +.+++++||++|++.+++.+ ..++++|++.++
T Consensus 32 ~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~l~~~la~~~g~--~~~i~~~sG~~ai~~~~~~~--~~~gd~vl~~~~ 106 (389)
T 3acz_A 32 FCFDSTQQGADLFMG-KGEGHIYSRLGNPTVEQFEEMVCSIEGA--AGSAAFGSGMGAISSSTLAF--LQKGDHLIAGDT 106 (389)
T ss_dssp BCCSSHHHHHHHHTT-CSSCCCBTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHTTT--CCTTCEEEEESS
T ss_pred eecCChHHHHHhhcC-CCCCcccCCCCChHHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHH--hCCCCEEEEeCC
Confidence 455665444433222 1223445567788899999999999865 47788899999999999865 235678999999
Q ss_pred CccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeC
Q 011777 190 AYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVEL 269 (477)
Q Consensus 190 ~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~ 269 (477)
.||+........... .|+....++. . | .+++++.++ +++++|++|+++|++|.+.+
T Consensus 107 ~y~~~~~~~~~~~~~---------~g~~~~~v~~------~-d----~~~l~~~i~----~~~~~v~~~~~~nptG~~~~ 162 (389)
T 3acz_A 107 LYGCTVSLFTHWLPR---------FGIEVDLIDT------S-D----VEKVKAAWK----PNTKMVYLESPANPTCKVSD 162 (389)
T ss_dssp CCHHHHHHHHHHHHH---------TTCEEEEECT------T-C----HHHHHHTCC----TTEEEEEEESSCTTTCCCCC
T ss_pred CchHHHHHHHHHHHH---------cCCEEEEECC------C-C----HHHHHHhcC----CCCeEEEEECCCCCCCeecC
Confidence 999854432110000 1222222211 1 1 477877775 46899999999999998776
Q ss_pred CchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCccee--eecccccC-ccce-EEEEeCH-HHHHhhcc
Q 011777 270 APGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-GLPL-GAVVTTP-EIANVMAQ 344 (477)
Q Consensus 270 ~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G~pi-g~v~~~~-~~~~~~~~ 344 (477)
+++|.++|++||+++|+||+|+++.. + ..+ +..+|++ +++|.+++ |.|+ |++++++ ++++.+..
T Consensus 163 ----l~~i~~~~~~~~~~livD~~~~~~~~-~-~~~-----~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~ 231 (389)
T 3acz_A 163 ----IKGIAVVCHERGARLVVDATFTSPCF-L-KPL-----ELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKF 231 (389)
T ss_dssp ----HHHHHHHHHHHTCEEEEECTTTCTTT-C-CGG-----GTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCEEEEECCCccccc-c-Ccc-----ccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHH
Confidence 99999999999999999999985421 2 222 2356777 68899996 6888 9999998 88887765
Q ss_pred cccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHH----hCCCce----------eeeccceeEEE
Q 011777 345 KIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQE----RHDIIG----------DVRGRGLMVGM 410 (477)
Q Consensus 345 ~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~----~~~~~~----------~v~g~g~~~~i 410 (477)
.....+.+.+++.+.++++.++.+. ...++..++.+.+.+.|++... .++.+. ..++.|.++.+
T Consensus 232 ~~~~~g~~~~~~~~~~~~~~l~~l~--~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~ 309 (389)
T 3acz_A 232 YRKDAGSLMAPMDAFLCARGMKTLP--IRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLF 309 (389)
T ss_dssp HHHHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEE
T ss_pred HHHhcCCCCCHHHHHHHHcCccHHH--HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEE
Confidence 4322233467888888888776542 2234444555555555554310 011110 11456788888
Q ss_pred EEeeCCCCCCccHHHHHHHHHHHHHcCceeecc--C--------------------------CCCCEEEEeCCCCCcHHH
Q 011777 411 ELVTDRKEKTPAKAETAVLFEKLRELGVLVGKG--G--------------------------LHGNVFRIKPPMCFTKDD 462 (477)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~--~--------------------------~~~~~iRi~p~~~~t~e~ 462 (477)
++.. ...+.+.+.+.|+++... | ...+.+|+++... +
T Consensus 310 ~l~~-----------~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~----~ 374 (389)
T 3acz_A 310 EMKS-----------FEAAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIE----N 374 (389)
T ss_dssp EESS-----------HHHHHHHHTTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSS----C
T ss_pred EECC-----------HHHHHHHHHhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccC----C
Confidence 8731 234556666778876552 1 1147899988876 4
Q ss_pred HHHHHHHHHHHHhh
Q 011777 463 ADFLVDALDYSMSK 476 (477)
Q Consensus 463 i~~~l~~l~~~l~~ 476 (477)
++++++.|++++++
T Consensus 375 ~~~li~~l~~al~~ 388 (389)
T 3acz_A 375 VDDIIADLKQALEL 388 (389)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhh
Confidence 55555666665544
No 181
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.90 E-value=9.9e-23 Score=204.13 Aligned_cols=324 Identities=12% Similarity=0.039 Sum_probs=200.5
Q ss_pred CC-EEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCC-CCCEEEEeCChHHHHHHHH
Q 011777 95 GR-RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPG-NLKVVYFVNSGTEANELAM 172 (477)
Q Consensus 95 G~-~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~-~~~~v~~~~sGseA~~~Al 172 (477)
|. .++|+..+.+.. ..++++++++. . +. .+.....++++.++++++. +.+++++++||++|++.++
T Consensus 26 g~~~v~~~~~~~~~~---~~~~~v~~a~~----~--~~---~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~ 93 (374)
T 2aeu_A 26 GRDALYDLSGLSGGF---LIDEKDKALLN----T--YI---GSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATI 93 (374)
T ss_dssp CGGGCEECSSCCCCC---CCCHHHHHHHT----S--TT---HHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHH
T ss_pred CccceeeecccCCCC---CCCHHHHHHHH----H--hc---CchHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHH
Confidence 44 456876544321 24788888875 1 11 1123345677777777654 2368999999999999999
Q ss_pred HHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCe
Q 011777 173 LMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKV 252 (477)
Q Consensus 173 ~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~ 252 (477)
+.+ ++++|++.+++||++......... .|...+.+ . | .++++++ + +++
T Consensus 94 ~~~----~gd~Vl~~~~~y~~~~~~~~~~~~----------~g~~~~~v-~--------d----~~~l~~~-~----~~~ 141 (374)
T 2aeu_A 94 LAL----KPKKVIHYLPELPGHPSIERSCKI----------VNAKYFES-D--------K----VGEILNK-I----DKD 141 (374)
T ss_dssp HHH----CCSEEEEECSSSSCCTHHHHHHHH----------TTCEEEEE-S--------C----HHHHHTT-C----CTT
T ss_pred HhC----CCCEEEEecCCCCccHHHHHHHHH----------cCcEEEEe-C--------C----HHHHHhc-C----CCc
Confidence 955 568899999999986432111100 12222221 0 1 4667665 3 467
Q ss_pred eE-EEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCccee--eecccccCccce
Q 011777 253 AG-FIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGNGLPL 329 (477)
Q Consensus 253 a~-vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~G~pi 329 (477)
++ |++++.+|++|. +...+++|.++|++||+++|+||+|..+. .+ ...........+|++ ++||.++ |+++
T Consensus 142 ~~~v~~~~p~nptG~---~~~~l~~i~~l~~~~~~~li~De~~~~~~-~~-~~~~~~~~~~~~di~~~S~sK~l~-g~~~ 215 (374)
T 2aeu_A 142 TLVIITGSTMDLKVI---ELENFKKVINTAKNKEAIVFVDDASGARV-RL-LFNQPPALKLGADLVVTSTDKLME-GPRG 215 (374)
T ss_dssp EEEEEECBCTTSCBC---CHHHHHHHHHHHHHHTCCEEEECTTHHHH-HH-HTTCCCHHHHTCSEEEEETTSSSS-SCSC
T ss_pred cEEEEEccCCCCCCC---CcccHHHHHHHHHHcCCEEEEECCccccc-cc-ccccCCccccCCcEEEecCccccc-Ccce
Confidence 88 888888888884 55669999999999999999999986442 11 000000111235666 5899986 4799
Q ss_pred EEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHH----HHHHHHHHHhC----CCceee
Q 011777 330 GAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHL----LGRLRTLQERH----DIIGDV 401 (477)
Q Consensus 330 g~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l----~~~L~~l~~~~----~~~~~v 401 (477)
|++++++++++.+.........+.+++.++++.++++.+..+ ..++..++.+.+ ++.|.+..... +.....
T Consensus 216 G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~ 294 (374)
T 2aeu_A 216 GLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLE-RIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYER 294 (374)
T ss_dssp EEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHH-HHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEE
T ss_pred EEEEECHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceee
Confidence 999999999988765433233456899999999999876432 233444444444 45555433221 112234
Q ss_pred eccceeEEEEEeeCCCCCCccHH---HHHHHH-HHHHHcCceeeccCCC---CCEEEEeCCC-CCcHHHHHHHHHHHHHH
Q 011777 402 RGRGLMVGMELVTDRKEKTPAKA---ETAVLF-EKLRELGVLVGKGGLH---GNVFRIKPPM-CFTKDDADFLVDALDYS 473 (477)
Q Consensus 402 ~g~g~~~~i~~~~~~~~~~~~~~---~~~~~~-~~l~~~Gv~v~~~~~~---~~~iRi~p~~-~~t~e~i~~~l~~l~~~ 473 (477)
++.|.++++... +... ...++. +.+.++||++.++..+ .+++||+++. ...+++++++++.|+++
T Consensus 295 ~~~g~~~~~~~~-------~~~~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~ 367 (374)
T 2aeu_A 295 TPTGFVIKRVYK-------DDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVES 367 (374)
T ss_dssp CSSEEEEEEEES-------SHHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHH
T ss_pred CCceEEEEeecc-------cccccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHH
Confidence 566766554311 1110 112244 4555789999887432 3589998764 23344588999999888
Q ss_pred Hhh
Q 011777 474 MSK 476 (477)
Q Consensus 474 l~~ 476 (477)
+++
T Consensus 368 l~~ 370 (374)
T 2aeu_A 368 IKM 370 (374)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 182
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.90 E-value=7.6e-23 Score=204.63 Aligned_cols=317 Identities=14% Similarity=0.086 Sum_probs=196.6
Q ss_pred ccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEE
Q 011777 108 VSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIAL 187 (477)
Q Consensus 108 ~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~ 187 (477)
.++|+++|.+.+.+.+++.+.......+..+...++++.|+++++. +.++|++||++|++.+++.+. ..+++.|++.
T Consensus 6 ~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~la~~~~~--~~~i~~~sgt~al~~~l~~l~-~~~gd~Vi~~ 82 (373)
T 3frk_A 6 ASFKPMHDEIEYEIKFKFEEIYKRNWFILGDEDKKFEQEFADYCNV--NYCIGCGNGLDALHLILKGYD-IGFGDEVIVP 82 (373)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTCCSSSHHHHHHHHHHHHHHTS--SEEEEESCHHHHHHHHHHHTT-CCTTCEEEEE
T ss_pred cCCCcccCCCCHHHHHHHHHHHHCCCccCCchHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHcC-CCCcCEEEEC
Confidence 3456665555555444443321111224567789999999999865 589999999999999998663 2356789999
Q ss_pred ccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCee
Q 011777 188 RNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAV 267 (477)
Q Consensus 188 ~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~ 267 (477)
.++|++........+. .+..++.. +. .+..| +++++++++ +++++|+ | +++.|..
T Consensus 83 ~~~~~~~~~~~~~~g~-----------~~~~~~~~-~~--~~~~d----~~~l~~~l~----~~~~~v~--~-~n~~G~~ 137 (373)
T 3frk_A 83 SNTFIATALAVSYTGA-----------KPIFVEPD-IR--TYNID----PSLIESAIT----EKTKAII--A-VHLYGQP 137 (373)
T ss_dssp TTSCTHHHHHHHHHSC-----------EEEEECEE-TT--TTEEC----GGGTGGGCC----TTEEEEE--E-ECCTTCC
T ss_pred CCCcHHHHHHHHHcCC-----------EEEEEecc-cc--ccCcC----HHHHHHhcC----CCCeEEE--E-ECCCcCc
Confidence 9999986554332221 11111111 00 01101 356666664 3677777 3 3356655
Q ss_pred eCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec----ccccC-ccceEEEEeC-HHHHHh
Q 011777 268 ELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA----KGIGN-GLPLGAVVTT-PEIANV 341 (477)
Q Consensus 268 ~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s----K~lg~-G~pig~v~~~-~~~~~~ 341 (477)
.+ +++|.++|++||+++|+||+|+. | ..+.....+..+|++++| |.+++ |. .|+++++ +++.+.
T Consensus 138 ~~----l~~i~~l~~~~~~~li~D~a~~~----g-~~~~~~~~~~~~d~~~~S~~~~K~l~~~g~-gg~~~~~~~~~~~~ 207 (373)
T 3frk_A 138 AD----MDEIKRIAKKYNLKLIEDAAQAH----G-SLYKGMKVGSLGDAAGFSFYPAKNLGSLGD-GGAVVTNDKDLAEK 207 (373)
T ss_dssp CC----HHHHHHHHHHHTCEEEEECTTCT----T-CEETTEETTSSSSEEEEECCTTSSSCCSSS-CEEEEESCHHHHHH
T ss_pred cc----HHHHHHHHHHcCCEEEEECCccc----C-CEECCEeccccccEEEEeCcCCCccCccce-eEEEEeCCHHHHHH
Confidence 55 99999999999999999999972 2 112223445557888877 99987 64 6888876 456655
Q ss_pred hcccc------------cccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeee-ccceeE
Q 011777 342 MAQKI------------QFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVR-GRGLMV 408 (477)
Q Consensus 342 ~~~~~------------~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~-g~g~~~ 408 (477)
+.... .+.++..+++.+++++..++.+ +++.++.+++.+++++.|.++. ........ ....+.
T Consensus 208 ~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~ 283 (373)
T 3frk_A 208 IKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLKYL--DKWNEERRKIAQKYIAGINNPN--VIIPVEADYAKHVWY 283 (373)
T ss_dssp HHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHCCCTT--EECCCCCTTEECCCS
T ss_pred HHHHHhcCcccCCccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCc--eEeccCCCCCceeeE
Confidence 54321 1234455777777776666543 4456667777777776665432 11110000 111222
Q ss_pred EEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC---C----------------------CCEEEEeCCCCCcHHHH
Q 011777 409 GMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL---H----------------------GNVFRIKPPMCFTKDDA 463 (477)
Q Consensus 409 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---~----------------------~~~iRi~p~~~~t~e~i 463 (477)
.+.+... ....+.+.|.++||.+.++.. . .+.+|++....+|++||
T Consensus 284 ~~~~~~~---------~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di 354 (373)
T 3frk_A 284 TFVIRSE---------KRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEI 354 (373)
T ss_dssp SEEEEES---------SHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHH
T ss_pred EEEEEeC---------CHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHH
Confidence 2222111 145788999999999875420 0 15799999999999999
Q ss_pred HHHHHHHHHHHh
Q 011777 464 DFLVDALDYSMS 475 (477)
Q Consensus 464 ~~~l~~l~~~l~ 475 (477)
+++++.|+++..
T Consensus 355 ~~~~~~l~~~~~ 366 (373)
T 3frk_A 355 EYVIDKINAWKL 366 (373)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHhh
Confidence 999999987653
No 183
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.89 E-value=5.6e-22 Score=196.83 Aligned_cols=308 Identities=11% Similarity=-0.005 Sum_probs=200.5
Q ss_pred CCHHHHHHHHHHHhhccccc-cccC--ChHHHHHHHHHHhhCCC-CCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEc
Q 011777 113 CHPDVLNAIFEQSKLLQHAT-TIYL--HHAIADFAEALASKMPG-NLKVVYFVNSGTEANELAMLMARLSTGNLGMIALR 188 (477)
Q Consensus 113 ~~p~v~~Av~~~l~~~~~~~-~~~~--~~~~~~l~~~La~~~~~-~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~ 188 (477)
.+|++.+++.+.+....... ..+. .+...+++++++++++. +.+++++++||++|++.+++... +. ++++..
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~---~~-~~i~~~ 90 (362)
T 3ffr_A 15 LYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCV---EK-KSFHCV 90 (362)
T ss_dssp CCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHC---SS-EEEEEE
T ss_pred CCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhcc---CC-cEEEEc
Confidence 47899999888876532111 1111 24567889999999865 34689999999999999998653 23 666666
Q ss_pred cCccCCccc-ccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCee
Q 011777 189 NAYHGGSSG-TIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAV 267 (477)
Q Consensus 189 ~~yhG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~ 267 (477)
..+++.... .....+. .+..++... ...++ .++++ + .+++++|+++++++++|.+
T Consensus 91 ~~~~~~~~~~~~~~~g~----------~~~~v~~~~--~~~~d------~~~l~--~----~~~~~~v~~~~~~nptG~~ 146 (362)
T 3ffr_A 91 NGSFSKRFYEFAGELGR----------EAYKEEAAF--GKGFY------PADIT--V----PADAEIICLTHNETSSGVS 146 (362)
T ss_dssp CSHHHHHHHHHHHHTTC----------EEEEEECCT--TCCCC------GGGCC--C----CTTCCEEEEESEETTTTEE
T ss_pred CcHHHHHHHHHHHHhCC----------CeEEEecCC--CCCCC------HHHHh--c----cCCccEEEEEcCCCCccee
Confidence 666652211 1111110 122222211 11111 24454 2 2467888888888889977
Q ss_pred eCCchhHHHHHHHHHHh-CcEEEEcCcccCccCCCCCCccccccCCCcceee--ecccccCccceEEEEeCHHHHHhhcc
Q 011777 268 ELAPGYLKLVYDIVRKA-GGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGNGLPLGAVVTTPEIANVMAQ 344 (477)
Q Consensus 268 ~~~~~~l~~l~~l~~~~-gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~pig~v~~~~~~~~~~~~ 344 (477)
.+ +++|.++|++| |+++|+||+|+.+... . +... .|+++ ++|.++++..+|++++++++++.+..
T Consensus 147 ~~----l~~i~~la~~~p~~~li~D~a~~~~~~~----~--~~~~--~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~ 214 (362)
T 3ffr_A 147 MP----VEDINTFRDKNKDALIFVDAVSSLPYPK----F--DWTK--IDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKA 214 (362)
T ss_dssp CC----HHHHTTSGGGSTTSEEEEECTTTTTSSC----C--CTTS--CSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHH
T ss_pred CC----HHHHHHHHHhCCCCEEEEecccccCCcc----c--ChhH--CcEEEEecccccCCCCceEEEEECHHHHHHhhh
Confidence 76 99999999999 9999999998733211 1 1111 56664 56999954557889999998776654
Q ss_pred ccc--------------------c-cCCCCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCCCcee
Q 011777 345 KIQ--------------------F-NTFGGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERHDIIGD 400 (477)
Q Consensus 345 ~~~--------------------~-~t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~ 400 (477)
... . ..++.+..++.+..++++.+.+ ++..++.+++.+++.+.|+++ +.+..
T Consensus 215 ~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~ 290 (362)
T 3ffr_A 215 LLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESS----KVFSF 290 (362)
T ss_dssp HHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC----SSEEE
T ss_pred ccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc----cCcee
Confidence 221 1 1345677777777788876654 345566666666666666543 22221
Q ss_pred ee-----ccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC--CCCCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777 401 VR-----GRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG--LHGNVFRIKPPMCFTKDDADFLVDALDYS 473 (477)
Q Consensus 401 v~-----g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~~~~iRi~p~~~~t~e~i~~~l~~l~~~ 473 (477)
.. ..+.++++.+.. ...++.+.|.++||.+.++. ..++++||++....+++++++++++|+++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~l~~~l~~~ 360 (362)
T 3ffr_A 291 GVEDAKLRSMTTIVANTTM----------LPGEINKILEPFDMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEK 360 (362)
T ss_dssp SSSCGGGBCSSEEEEEESS----------CHHHHHHHHGGGTEEEEECSGGGTTTEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ccCChhhcCCceEEEecCC----------CHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 11 124556666521 25678899999999998752 23579999999999999999999999886
Q ss_pred H
Q 011777 474 M 474 (477)
Q Consensus 474 l 474 (477)
+
T Consensus 361 ~ 361 (362)
T 3ffr_A 361 I 361 (362)
T ss_dssp T
T ss_pred h
Confidence 5
No 184
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.89 E-value=3.7e-22 Score=202.43 Aligned_cols=295 Identities=17% Similarity=0.134 Sum_probs=194.4
Q ss_pred ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777 130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY 209 (477)
Q Consensus 130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~ 209 (477)
+....+.++...+|+++|+++.+. +.+++++||++|++.+++.+. .+++.||+.+++||+..........
T Consensus 73 ~~y~r~~~p~~~~l~~~la~~~g~--~~~~~~~sG~~Ai~~al~~l~--~~Gd~Vi~~~~~y~~~~~~~~~~~~------ 142 (414)
T 3ndn_A 73 YVYSRYGNPTVSVFEERLRLIEGA--PAAFATASGMAAVFTSLGALL--GAGDRLVAARSLFGSCFVVCSEILP------ 142 (414)
T ss_dssp CCBTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHTTC--CTTCEEEEESCCCHHHHHHHHTHHH------
T ss_pred cCcCCCCChHHHHHHHHHHHHHCC--CcEEEECCHHHHHHHHHHHHh--CCCCEEEEcCCccchHHHHHHHHHH------
Confidence 445567889999999999999854 689999999999999998653 3568899999999986433221100
Q ss_pred CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777 210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI 289 (477)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI 289 (477)
..|...+.++.. | +++++++++ +++++|++|+++|++|.+.+ +++|.++|++||+++|
T Consensus 143 ---~~g~~~~~v~~~-------d----~~~l~~ai~----~~t~~v~le~p~NptG~~~~----l~~i~~la~~~g~~li 200 (414)
T 3ndn_A 143 ---RWGVQTVFVDGD-------D----LSQWERALS----VPTQAVFFETPSNPMQSLVD----IAAVTELAHAAGAKVV 200 (414)
T ss_dssp ---HTTCEEEEECTT-------C----HHHHHHHTS----SCCSEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEE
T ss_pred ---HcCcEEEEeCCC-------C----HHHHHHhcC----CCCeEEEEECCCCCCCcccc----HHHHHHHHHHcCCEEE
Confidence 012222222211 1 578888876 46789999999999998766 9999999999999999
Q ss_pred EcCcccCccCCCCCCccccccCCCcceeeecccccC-c-cceEEEEeCHHHHH-hhcccccccCCCCcHHHHHHHHHHHH
Q 011777 290 ADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGN-G-LPLGAVVTTPEIAN-VMAQKIQFNTFGGNPVCSAGGLAVLR 366 (477)
Q Consensus 290 ~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~-G-~pig~v~~~~~~~~-~~~~~~~~~t~~~~~~~~aaa~a~l~ 366 (477)
+||+|+. +. .+....+|....+.+++|.+++ | +++|+++++++.+. .+...........+++.+++++..++
T Consensus 201 vDe~~~~-~~----~~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~ 275 (414)
T 3ndn_A 201 LDNVFAT-PL----LQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLE 275 (414)
T ss_dssp EECTTTH-HH----HCCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGG
T ss_pred EECCCcc-cc----cCCchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999972 21 1111234555556678999997 7 89999999988765 44422111122346777666666665
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHHHHhCCCcee------------------eeccceeEEEEEeeCCCCCCccHHHHHH
Q 011777 367 VIDKERRQAHCADVGSHLLGRLRTLQERHDIIGD------------------VRGRGLMVGMELVTDRKEKTPAKAETAV 428 (477)
Q Consensus 367 ~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~------------------v~g~g~~~~i~~~~~~~~~~~~~~~~~~ 428 (477)
.+. ...++..++.+++.+.|++ ++.+.. .+|.|.++++++..... ........
T Consensus 276 ~l~--~r~~~~~~~a~~l~~~L~~----~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~---~~~~~~~~ 346 (414)
T 3ndn_A 276 TLA--IRVQHSNASAQRIAEFLNG----HPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPED---VAKQRAFE 346 (414)
T ss_dssp GHH--HHHHHHHHHHHHHHHHHHT----CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGG---GHHHHHHH
T ss_pred HHH--HHHHHHHHHHHHHHHHHhc----CCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCcc---ccHHHHHH
Confidence 442 2344555566666665543 333222 25678999999842100 00234567
Q ss_pred HHHHHHHcCceeeccC-------------------------CCCCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777 429 LFEKLRELGVLVGKGG-------------------------LHGNVFRIKPPMCFTKDDADFLVDALDYSM 474 (477)
Q Consensus 429 ~~~~l~~~Gv~v~~~~-------------------------~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l 474 (477)
+.+.|...++.+..|+ ...+.||++..+ |+++.+++.|++++
T Consensus 347 ~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~----e~~~dli~dl~~al 413 (414)
T 3ndn_A 347 VLDKMRLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL----EDTDDLIADIDRAL 413 (414)
T ss_dssp HHHHCSSSEECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHH
T ss_pred HHHhCccceEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHhh
Confidence 7777776665554432 235789997765 55666677777665
No 185
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.89 E-value=1.4e-21 Score=203.12 Aligned_cols=349 Identities=13% Similarity=0.067 Sum_probs=207.1
Q ss_pred CCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCC----hHHHHHHHHHHhhCCCCC-CEEEEeCChHHH
Q 011777 93 ENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLH----HAIADFAEALASKMPGNL-KVVYFVNSGTEA 167 (477)
Q Consensus 93 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~----~~~~~l~~~La~~~~~~~-~~v~~~~sGseA 167 (477)
..+..|+|+..+ ++.+|.+++++...+... ........ ....+++++|+++++.+. +.++|++|||||
T Consensus 98 ~~~~~yl~~~~~------~~~~~~v~~~~~~~~~n~-~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a 170 (497)
T 2qma_A 98 TQHPDCIAHLHT------PPLMPAVAAEAMIAALNQ-SMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQS 170 (497)
T ss_dssp TTSTTBCSSSCC------CCBHHHHHHHHHHHHHCC-CTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHH
T ss_pred CCCCCeeEeCCC------CCcHHHHHHHHHHHhhcc-cccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHH
Confidence 345678888765 346888988886654321 11111112 234456777999986543 689999999999
Q ss_pred HHHHHHHHHhc------------cC-----Cc-eEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCC
Q 011777 168 NELAMLMARLS------------TG-----NL-GMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSF 229 (477)
Q Consensus 168 ~~~Al~~ar~~------------~~-----~~-~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (477)
|..+++.+|.+ .| ++ .|++.. ..|..........+.. ...+..++... ...+
T Consensus 171 ~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~-~~h~s~~~~~~~~g~g-------~~~v~~v~~~~--~~~~ 240 (497)
T 2qma_A 171 NQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSK-KSHFTVQKSASWMGLG-------EKAVMTVDANA--DGTM 240 (497)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEET-TSCTHHHHHHHHTTSC-------GGGEEEECBCT--TSSB
T ss_pred HHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECC-CchHHHHHHHHHcCCC-------cccEEEEecCC--CCcC
Confidence 99999987642 11 23 344444 4444332222221110 00123333221 1111
Q ss_pred CCCHHHHHHHHHHHHhccC--CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc
Q 011777 230 GSDAARYAQDLQDHIDFGT--SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF 307 (477)
Q Consensus 230 ~~~~~~~~~~le~~i~~~~--~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~ 307 (477)
+ .++|+++|+... ...+.+|++...++++|.+.+ +++|.++|++||+++|+|++|+++.... . +..
T Consensus 241 d------~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~----l~~I~~l~~~~~~~l~vD~a~~~~~~~~-~-~~~ 308 (497)
T 2qma_A 241 D------ITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDD----LDFIADMAVKHDMWMHVDGAYGGALILS-S-HKS 308 (497)
T ss_dssp C------GGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGS-T-TGG
T ss_pred C------HHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhhHHHHhC-c-chH
Confidence 2 367777776211 112447777766777787666 9999999999999999999999886655 3 333
Q ss_pred cccCC-Ccceeee--cccccCccceEEEEeCHH-HHHhhcccc-c---ccCCCCcHHHH----------HHHHHHHHhhc
Q 011777 308 ETQGV-IPDIVTM--AKGIGNGLPLGAVVTTPE-IANVMAQKI-Q---FNTFGGNPVCS----------AGGLAVLRVID 369 (477)
Q Consensus 308 ~~~gv-~pDivt~--sK~lg~G~pig~v~~~~~-~~~~~~~~~-~---~~t~~~~~~~~----------aaa~a~l~~l~ 369 (477)
...++ .+|++++ +|.+++++++|+++++++ .++.+.... + ..+...++... .+..++++.+.
T Consensus 309 ~~~gi~~~D~i~~s~hK~l~~p~~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg 388 (497)
T 2qma_A 309 RLKGVERAHSISVDFHKLFYQTISCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVG 388 (497)
T ss_dssp GGTTGGGCSEEEEETTTTTCCCSSCEEEEESCGGGGGGGCC--------------------CCSCCCTHHHHHHHHHHTC
T ss_pred hhcCcccCCEEEEcchhccCCCcceEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhC
Confidence 34466 6788876 799998889999998754 344443210 0 01111222211 12334555554
Q ss_pred hh---hHHHHHHHHHHHHHHHHHHHHHhCCCcee-eeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC
Q 011777 370 KE---RRQAHCADVGSHLLGRLRTLQERHDIIGD-VRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL 445 (477)
Q Consensus 370 ~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~-v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~ 445 (477)
.+ ++.++..++.+++.+.|+++ +.+.. ....+.++.+.+.... .........+.+.|.++|+++.+...
T Consensus 389 ~~g~~~~~~~~~~~a~~l~~~L~~~----~~~~~~~~~~~~~v~f~~~~~~---~~~~~l~~~l~~~l~~~G~~~~~~~~ 461 (497)
T 2qma_A 389 PKALGDMYDHLLAQTLEVADMIRTN----DQFELLAEPSLSTVLFRATHET---ADLDELNKALRLEALTRGIAVLGETI 461 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC----TTEEECSCCSSSEEEEEECCSS---SCHHHHHHHHHHHHHHHTSCBCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC----CCeEEEcCCCceEEEEEEcCCc---cCHHHHHHHHHHHHHhCCCEEEEeeE
Confidence 33 45666677777777777653 22211 1234557777764321 01112235677888999998865322
Q ss_pred C--CCEEEEeC-CCCCcHHHHHHHHHHHHHHHhhC
Q 011777 446 H--GNVFRIKP-PMCFTKDDADFLVDALDYSMSKL 477 (477)
Q Consensus 446 ~--~~~iRi~p-~~~~t~e~i~~~l~~l~~~l~~l 477 (477)
. .+++||++ +..+|++||++++++|+++++++
T Consensus 462 ~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 496 (497)
T 2qma_A 462 VDGKTALKFTILNPCLTTSDFESLLSKINMLAVEL 496 (497)
T ss_dssp ETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 1 35899997 88899999999999999988764
No 186
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.89 E-value=1.4e-21 Score=198.16 Aligned_cols=333 Identities=13% Similarity=0.063 Sum_probs=195.4
Q ss_pred EEeecCCcccccCCCCCHHHHHHHHHHHhhc-c--ccc-cccC-C----hHHHHHHHHHHhhCCCCCCEEEEeCChHHHH
Q 011777 98 YLDAFAGIVTVSCGHCHPDVLNAIFEQSKLL-Q--HAT-TIYL-H----HAIADFAEALASKMPGNLKVVYFVNSGTEAN 168 (477)
Q Consensus 98 ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~-~--~~~-~~~~-~----~~~~~l~~~La~~~~~~~~~v~~~~sGseA~ 168 (477)
.+++.++.. +.+|+|++|+.+++... . +.. ..+. . +....+++++++.++.+.++| +++||++|+
T Consensus 27 ~i~l~~~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i-~~~sGt~a~ 100 (417)
T 3n0l_A 27 GLEMIASEN-----FTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANV-QPNSGSQAN 100 (417)
T ss_dssp SEECCTTCC-----CCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEEC-CCSSHHHHH
T ss_pred CeeeecccC-----CCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcce-EeccHHHHH
Confidence 455554432 35899999999888432 1 111 0111 1 223345568888887654445 456779999
Q ss_pred HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777 169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT 248 (477)
Q Consensus 169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~ 248 (477)
+.+++.+. .+++.|++..++|++........... ..++..++++... .+..| +++|+++++.
T Consensus 101 ~~~~~~~~--~~gd~vl~~~~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~--~~~~d----~~~l~~~i~~-- 162 (417)
T 3n0l_A 101 QGVYAALI--NPGDKILGMDLSHGGHLTHGAKVSSS--------GKMYESCFYGVEL--DGRID----YEKVREIAKK-- 162 (417)
T ss_dssp HHHHHHHS--CTTCEEEEECC------------------------CCSEEEEECCCT--TSSCC----HHHHHHHHHH--
T ss_pred HHHHHHhc--CCCCEEEecccccccccchhhhhhhh--------cceeeeEeccCCC--CCCcC----HHHHHHHHHh--
Confidence 99999773 46788999999998753311111000 0122222222211 11112 5788888862
Q ss_pred CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc-CccCCCCCCccccccCCCcceeeec--ccccC
Q 011777 249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT-GFGRTGSHYWGFETQGVIPDIVTMA--KGIGN 325 (477)
Q Consensus 249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-gfgr~G~~~~~~~~~gv~pDivt~s--K~lg~ 325 (477)
.++++|++.+.+ .|.+.+ +++|.++|++||++||+||+|+ |+...|.....+. ..|++++| |++ +
T Consensus 163 -~~~~~v~~~~~~--~G~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~----~~di~~~s~sK~l-~ 230 (417)
T 3n0l_A 163 -EKPKLIVCGASA--YARVID----FAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFP----YAHVVSSTTHKTL-R 230 (417)
T ss_dssp -HCCSEEEECCSS--CCSCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT----TCSEEEEESSTTT-C
T ss_pred -cCCeEEEECCcc--cCccCC----HHHHHHHHHHcCCEEEEECccchhhhhcccCCCccc----cceEEEeeCcccc-C
Confidence 245677765533 365555 9999999999999999999974 4333331111111 24777654 999 5
Q ss_pred ccceEEEEeC-HHHHHhhcccccc-cCCCCcHHHHHHHHHHHHhhc-h--hhHHHHHHHHHHHHHHHHHHHHHhCCCcee
Q 011777 326 GLPLGAVVTT-PEIANVMAQKIQF-NTFGGNPVCSAGGLAVLRVID-K--ERRQAHCADVGSHLLGRLRTLQERHDIIGD 400 (477)
Q Consensus 326 G~pig~v~~~-~~~~~~~~~~~~~-~t~~~~~~~~aaa~a~l~~l~-~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~ 400 (477)
|++.|+++++ +++.+.+...... .+.+.++..+++..+++.... + +++.+++.++.+++.+.|.+. ......
T Consensus 231 g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~- 307 (417)
T 3n0l_A 231 GPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDR--KFKLVS- 307 (417)
T ss_dssp SCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT--TCEEGG-
T ss_pred CCCeeEEEECCHHHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC--Cceecc-
Confidence 6678999998 7888877654332 333445666666666666532 2 356667777777777777662 111111
Q ss_pred eeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC--------CCCCEEEEeCCCC----CcHHHHHHHHH
Q 011777 401 VRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG--------LHGNVFRIKPPMC----FTKDDADFLVD 468 (477)
Q Consensus 401 v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--------~~~~~iRi~p~~~----~t~e~i~~~l~ 468 (477)
....+.++++.+.... .....+.+.|.++||.+.+.. ...+.+|+.++.. +++++|+++++
T Consensus 308 ~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~ 380 (417)
T 3n0l_A 308 DGTDNHLVLMSFLDRE-------FSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSN 380 (417)
T ss_dssp GSCSSSEEEEECTTSS-------SCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHH
T ss_pred CCCCceEEEEEcccCC-------CCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHH
Confidence 1123456666653211 123567788889999987542 1236699987643 56899999999
Q ss_pred HHHHHHhh
Q 011777 469 ALDYSMSK 476 (477)
Q Consensus 469 ~l~~~l~~ 476 (477)
+|++++++
T Consensus 381 ~l~~~l~~ 388 (417)
T 3n0l_A 381 YIADILDD 388 (417)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99998863
No 187
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.89 E-value=9.8e-23 Score=205.18 Aligned_cols=309 Identities=19% Similarity=0.151 Sum_probs=201.0
Q ss_pred CHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccC
Q 011777 114 HPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHG 193 (477)
Q Consensus 114 ~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG 193 (477)
++++.+++.+.+....+. +..+...++++.|+++++. +.+++++||++|++.+++.+. ..+++.|++..++|++
T Consensus 35 ~~~~~~a~~~~~~~~~~~---~~~~~~~~l~~~la~~~~~--~~~i~~~~gt~al~~~l~~~~-~~~gd~vl~~~~~~~~ 108 (391)
T 3dr4_A 35 DGNERDYVLECMDTTWIS---SVGRFIVEFEKAFADYCGV--KHAIACNNGTTALHLALVAMG-IGPGDEVIVPSLTYIA 108 (391)
T ss_dssp CSSHHHHHHHHHHHTCCS---SCSHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHT-CCTTCEEEEESSSCTH
T ss_pred CHHHHHHHHHHHHcCCcc---CCChHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHcC-CCCcCEEEECCCchHH
Confidence 367888888777653221 2467789999999999865 489999999999999999773 2356789999999998
Q ss_pred CcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchh
Q 011777 194 GSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGY 273 (477)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~ 273 (477)
........+. .+..++... . .+..| ++++++.++ +++++|+++ +++|.+.+
T Consensus 109 ~~~~~~~~g~-----------~~~~~~~~~-~--~~~~d----~~~l~~~~~----~~~~~v~~~---n~tG~~~~---- 159 (391)
T 3dr4_A 109 SANSVTYCGA-----------TPVLVDNDP-R--TFNLD----AAKLEALIT----PRTKAIMPV---HLYGQICD---- 159 (391)
T ss_dssp HHHHHHHTTC-----------EEEEECBCT-T--TCSBC----GGGSGGGCC----TTEEEECCB---CGGGCCCC----
T ss_pred HHHHHHHCCC-----------EEEEEecCc-c--ccCcC----HHHHHHhcC----CCceEEEEE---CCCCChhh----
Confidence 7655433321 111222110 0 11111 356666654 467777743 35565554
Q ss_pred HHHHHHHHHHhCcEEEEcCcccC-ccCCCCCCccccccCCCcceeeec----ccccCccceEEEEeC-HHHHHhhcccc-
Q 011777 274 LKLVYDIVRKAGGVCIADEVQTG-FGRTGSHYWGFETQGVIPDIVTMA----KGIGNGLPLGAVVTT-PEIANVMAQKI- 346 (477)
Q Consensus 274 l~~l~~l~~~~gillI~DEv~~g-fgr~G~~~~~~~~~gv~pDivt~s----K~lg~G~pig~v~~~-~~~~~~~~~~~- 346 (477)
+++|.++|++||+++|+||+|+. ....+ ...+..+|++++| |++++| +.|+++++ +++.+.+....
T Consensus 160 ~~~i~~l~~~~~~~li~D~a~~~g~~~~~------~~~~~~~di~~~S~s~~K~l~~g-~gg~~~~~~~~~~~~~~~~~~ 232 (391)
T 3dr4_A 160 MDPILEVARRHNLLVIEDAAEAVGATYRG------KKSGSLGDCATFSFFGNAIITTG-EGGMITTNDDDLAAKMRLLRG 232 (391)
T ss_dssp HHHHHHHHHHTTCEEEEECTTCTTCEETT------EETTSSSSEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHHHB
T ss_pred HHHHHHHHHHcCCEEEEECcccccceECC------eeecccCCEEEEECCCCCcCCcC-CeEEEEECCHHHHHHHHHHHh
Confidence 99999999999999999999972 21112 2233345777766 999774 57888776 45665554221
Q ss_pred cc-------------cCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCcee-----eeccceeE
Q 011777 347 QF-------------NTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGD-----VRGRGLMV 408 (477)
Q Consensus 347 ~~-------------~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~-----v~g~g~~~ 408 (477)
++ ..+..+++.+++++..++.+ ++..++.+++.+++++.|.++ ....... ....+.++
T Consensus 233 ~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~ 308 (391)
T 3dr4_A 233 QGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERV--DEHLAARERVVGWYEQKLARL--GNRVTKPHVALTGRHVFWMY 308 (391)
T ss_dssp TTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHGGG--TTSEECCCCCTTSCCCCSSE
T ss_pred cCCCCCCcccccccccccCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC--CccccCcCCCCCCcceeEEE
Confidence 11 12455677777666665533 456777788888888888765 2221111 12223345
Q ss_pred EEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC----------------------CCCEEEEeCCCCCcHHHHHHH
Q 011777 409 GMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL----------------------HGNVFRIKPPMCFTKDDADFL 466 (477)
Q Consensus 409 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~----------------------~~~~iRi~p~~~~t~e~i~~~ 466 (477)
++.+.... .....++.+.|.++||.+.++.. ..+.+|+.+...+|++||+++
T Consensus 309 ~i~~~~~~------~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~ 382 (391)
T 3dr4_A 309 TVRLGEGL------STTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRV 382 (391)
T ss_dssp EEEECSSC------SSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHH
T ss_pred EEEECCcc------chhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHH
Confidence 66553210 11246788999999999986520 135799999999999999999
Q ss_pred HHHHHHHH
Q 011777 467 VDALDYSM 474 (477)
Q Consensus 467 l~~l~~~l 474 (477)
+++|++++
T Consensus 383 ~~~l~~~l 390 (391)
T 3dr4_A 383 IAALDQVL 390 (391)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHHh
Confidence 99998765
No 188
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.89 E-value=3.1e-22 Score=202.21 Aligned_cols=339 Identities=14% Similarity=0.076 Sum_probs=202.3
Q ss_pred EEEeecCCcccccCC--CCCHHHHHHHHHHH-hh-c--cccccccCChHHHHHHHHHHhhCCC--CCC--EEEEeCChHH
Q 011777 97 RYLDAFAGIVTVSCG--HCHPDVLNAIFEQS-KL-L--QHATTIYLHHAIADFAEALASKMPG--NLK--VVYFVNSGTE 166 (477)
Q Consensus 97 ~ylD~~~g~~~~~lG--h~~p~v~~Av~~~l-~~-~--~~~~~~~~~~~~~~l~~~La~~~~~--~~~--~v~~~~sGse 166 (477)
..|||..|.....-| ...+.|.+|.. .+ +. . .|....+..+.++.+++++.+.... ..+ .+++|+||++
T Consensus 30 ~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~ 108 (405)
T 3k7y_A 30 EKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTG 108 (405)
T ss_dssp SCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHH
T ss_pred CcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchHH
Confidence 457887775322223 24677888766 33 22 1 2222334445566666666544321 223 4699999999
Q ss_pred HHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhc
Q 011777 167 ANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF 246 (477)
Q Consensus 167 A~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~ 246 (477)
|+..++++.....+ +.|++.+++|.++.......+ ...+.+|......++-| ++++++.++.
T Consensus 109 al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~~~d----~~~l~~~l~~ 170 (405)
T 3k7y_A 109 AIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESRG-------------FNLKYINFFDYNLIDIN----YDLFLNDLRN 170 (405)
T ss_dssp HHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTTT-------------CEEEEECCEETTTTEEC----HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHcC-------------CeEEEEeccccccCCcC----HHHHHHHHHh
Confidence 99999987655446 999999999998765544332 22333322111112212 4778887763
Q ss_pred cCCCCeeEEEecc-cCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCC--Cccccc-cCCCcc---eeee
Q 011777 247 GTSGKVAGFIAET-IQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSH--YWGFET-QGVIPD---IVTM 319 (477)
Q Consensus 247 ~~~~~~a~vi~ep-i~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~--~~~~~~-~gv~pD---ivt~ 319 (477)
. .+.+++++.| .||++| ..++++.+++|.++|++||+++|+||+|.+|...+.. ...... ...... +-+|
T Consensus 171 ~--~~~~~i~l~~~~~NPTG-~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 247 (405)
T 3k7y_A 171 I--PNGSSVILQISCYNPCS-VNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSF 247 (405)
T ss_dssp S--CSSCEEEECCSSCTTTC-CCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEEC
T ss_pred C--CCCeEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeC
Confidence 2 2445677765 478888 5678999999999999999999999999998754311 111111 111222 3479
Q ss_pred ccccc-CccceEEEEe---CHHHHHhhcc----cccccCCCCcHHHHHHHHHHHHhhc-hhh-------HHHHHHHHHHH
Q 011777 320 AKGIG-NGLPLGAVVT---TPEIANVMAQ----KIQFNTFGGNPVCSAGGLAVLRVID-KER-------RQAHCADVGSH 383 (477)
Q Consensus 320 sK~lg-~G~pig~v~~---~~~~~~~~~~----~~~~~t~~~~~~~~aaa~a~l~~l~-~~~-------~~~~~~~~~~~ 383 (477)
||.++ .|+|+||+++ ++++++.+.. .......+.+.+++.++.++|+.-. .+. +.++++++++.
T Consensus 248 SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~ 327 (405)
T 3k7y_A 248 SKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRIL 327 (405)
T ss_dssp TTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 6999999864 5666654432 1112223456788888777776311 011 22334444555
Q ss_pred HHHHHHHHHHhCCC---ceeeecc-ceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCc
Q 011777 384 LLGRLRTLQERHDI---IGDVRGR-GLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFT 459 (477)
Q Consensus 384 l~~~L~~l~~~~~~---~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t 459 (477)
+.+.|++..++++. +....+. |+|+|+.+. . ++++.|.++||++.|++ ||+.. ..+
T Consensus 328 l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~--------~-----~~~~~L~~~gV~v~p~~------Ris~a-~~~ 387 (405)
T 3k7y_A 328 FFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLL--------A-----KIAEHLKTHHIYIINNG------RINVS-GIT 387 (405)
T ss_dssp HHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGG--------G-----GGTTTTTTTTEECCTTS------EEEGG-GCC
T ss_pred HHHHHHhhhhhcCCCCCCccccCCceEEEecCCC--------H-----HHHHHHHHCCEeecCCC------eEEEe-ccC
Confidence 55554410003332 2223334 555565331 1 22345578899999863 88643 357
Q ss_pred HHHHHHHHHHHHHHHhhC
Q 011777 460 KDDADFLVDALDYSMSKL 477 (477)
Q Consensus 460 ~e~i~~~l~~l~~~l~~l 477 (477)
+++|++++++|.++++++
T Consensus 388 ~~~i~~~~~~i~~~~~~~ 405 (405)
T 3k7y_A 388 KNNVDYIADKICLSLSQI 405 (405)
T ss_dssp TTHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 899999999999998753
No 189
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.89 E-value=1.1e-21 Score=192.99 Aligned_cols=282 Identities=15% Similarity=-0.011 Sum_probs=188.5
Q ss_pred HHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecC
Q 011777 142 DFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVN 221 (477)
Q Consensus 142 ~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (477)
+++++|+++++.+ ..++++||++|++.+++... .++++|++..++||+........... .|.....+
T Consensus 2 ~l~~~la~~~g~~--~~i~~~sG~~a~~~~~~~~~--~~g~~v~~~~~~~~~~~~~~~~~~~~---------~g~~~~~~ 68 (331)
T 1pff_A 2 ALEGKIAKLEHAE--ACAATASGMGAIAASVWTFL--KAGDHLISDDCLYGCTHALFEHQLRK---------FGVEVDFI 68 (331)
T ss_dssp HHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC--CTTCEEEEESCCCHHHHHHHHTHHHH---------TTCEEEEE
T ss_pred hHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhc--CCCCEEEEcCCCcchHHHHHHHHHHh---------cCCEEEEe
Confidence 5778888888653 66778888999999998653 35678999999999865443221000 02222211
Q ss_pred CCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHH-hCcEEEEcCcccCccCC
Q 011777 222 PDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRK-AGGVCIADEVQTGFGRT 300 (477)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~-~gillI~DEv~~gfgr~ 300 (477)
+. . | .+++++.++ +++++|++++++|++|.+.+ +++|.++|++ ||+++|+||+|+.+. .
T Consensus 69 ~~-----~--d----~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~~li~D~a~~~~~-~ 128 (331)
T 1pff_A 69 DM-----A--V----PGNIEKHLK----PNTRIVYFETPANPTLKVID----IEDAVKQARKQKDILVIVDNTFASPI-L 128 (331)
T ss_dssp CT-----T--S----TTHHHHTCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTHHH-H
T ss_pred CC-----C--C----HHHHHHhhc----CCCeEEEEECCCCCcCcccC----HHHHHHHHhhhcCCEEEEECCCcccc-c
Confidence 11 0 1 367777765 46889999999999998776 9999999999 999999999997332 1
Q ss_pred CCCCccccccCCCcceeeecccccC-ccc-eEEEEeCH-HHHHhhcccccc-cCCCCcHHHHHHHHHHHHhhchhhHHHH
Q 011777 301 GSHYWGFETQGVIPDIVTMAKGIGN-GLP-LGAVVTTP-EIANVMAQKIQF-NTFGGNPVCSAGGLAVLRVIDKERRQAH 376 (477)
Q Consensus 301 G~~~~~~~~~gv~pDivt~sK~lg~-G~p-ig~v~~~~-~~~~~~~~~~~~-~t~~~~~~~~aaa~a~l~~l~~~~~~~~ 376 (477)
. . .. .++....+.+++|.+++ |.| +|++++++ ++++.+...... .+.+.+++++.++.++++.+.. ..++
T Consensus 129 ~-~--~~-~~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~ 202 (331)
T 1pff_A 129 T-N--PL-DLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDM--RVKR 202 (331)
T ss_dssp C-C--GG-GGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHH--HHHH
T ss_pred C-C--hh-hcCCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcchHHH--HHHH
Confidence 1 1 11 23444444578999996 688 79999998 898888776655 5667888888887777764421 2233
Q ss_pred HHHHHHHHHHHHHHHHH---h-CCCce----------eeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeec
Q 011777 377 CADVGSHLLGRLRTLQE---R-HDIIG----------DVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGK 442 (477)
Q Consensus 377 ~~~~~~~l~~~L~~l~~---~-~~~~~----------~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~ 442 (477)
..++.+.+.+.+++... . ++.+. ..++.|.++.+.+. ....+.+.|.++||++..
T Consensus 203 ~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~gI~~~~ 271 (331)
T 1pff_A 203 AAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD-----------GLEKAKKVLDNCHVVSLA 271 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS-----------SHHHHHHHHHTCSSSEEC
T ss_pred HHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC-----------CHHHHHHHHHhCCCceec
Confidence 33344444444433210 0 01111 11346778887763 134577788889997643
Q ss_pred cC----------------------------CCCCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777 443 GG----------------------------LHGNVFRIKPPMCFTKDDADFLVDALDYS 473 (477)
Q Consensus 443 ~~----------------------------~~~~~iRi~p~~~~t~e~i~~~l~~l~~~ 473 (477)
.. ...+++|++++...++++++.+++.|+++
T Consensus 272 ~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 272 VSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp SSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred cCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 21 12479999999999999999999998764
No 190
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.89 E-value=2.5e-21 Score=194.59 Aligned_cols=312 Identities=13% Similarity=0.072 Sum_probs=200.8
Q ss_pred CHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccC
Q 011777 114 HPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHG 193 (477)
Q Consensus 114 ~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG 193 (477)
.|++++++.++++...+ ..+..+...++++.|+++++.. ..++++||++|++.+++.+. ..++++|++..++||+
T Consensus 16 ~~~~~~a~~~~l~~~~~--~~~~~~~~~~l~~~la~~~~~~--~~i~~~sGt~al~~~l~~l~-~~~gd~Vi~~~~~~~~ 90 (388)
T 1b9h_A 16 DDAERNGLVRALEQGQW--WRMGGDEVNSFEREFAAHHGAA--HALAVTNGTHALELALQVMG-VGPGTEVIVPAFTFIS 90 (388)
T ss_dssp CHHHHHHHHHHHHTSCC--BTTTCSHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCTH
T ss_pred CHHHHHHHHHHHHcCCe--eecCCHHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcC-CCCcCEEEECCCccHH
Confidence 48999999999876321 2334567889999999999653 45566678999999998763 2356789999999998
Q ss_pred CcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchh
Q 011777 194 GSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGY 273 (477)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~ 273 (477)
........ |...+.++.... .+..| +++|+++++ +++++|+ |++. +|.+.+
T Consensus 91 ~~~~~~~~-------------g~~~~~v~~~~~-~~~~d----~~~l~~~i~----~~~~~v~--~~n~-tG~~~~---- 141 (388)
T 1b9h_A 91 SSQAAQRL-------------GAVTVPVDVDAA-TYNLD----PEAVAAAVT----PRTKVIM--PVHM-AGLMAD---- 141 (388)
T ss_dssp HHHHHHHT-------------TCEEEEECBCTT-TCCBC----HHHHHHHCC----TTEEEEC--CBCG-GGCCCC----
T ss_pred HHHHHHHc-------------CCEEEEEecCCC-cCCCC----HHHHHHhcC----cCceEEE--EeCC-ccCcCC----
Confidence 76544222 222222221110 11112 478888775 3577766 5544 565655
Q ss_pred HHHHHHHHHHhCcEEEEcCcccC-ccCCCCCCccccccCCCcceeeec--ccccCccceEEEEeCHH-H--HHhhcccc-
Q 011777 274 LKLVYDIVRKAGGVCIADEVQTG-FGRTGSHYWGFETQGVIPDIVTMA--KGIGNGLPLGAVVTTPE-I--ANVMAQKI- 346 (477)
Q Consensus 274 l~~l~~l~~~~gillI~DEv~~g-fgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~~~~~-~--~~~~~~~~- 346 (477)
+++|.++|++||++||+||+|+. +...| .. +..++ ..++.+|| |++++| ++|+++++++ + ++.+....
T Consensus 142 l~~i~~la~~~~~~li~D~a~~~g~~~~~-~~--~~~~~-~i~~~S~s~~K~l~g~-~~G~~~~~~~~~~~~~~~~~~~~ 216 (388)
T 1b9h_A 142 MDALAKISADTGVPLLQDAAHAHGARWQG-KR--VGELD-SIATFSFQNGKLMTAG-EGGAVVFPDGETEKYETAFLRHS 216 (388)
T ss_dssp HHHHHHHHHHHTCCBCEECTTCTTCEETT-EE--GGGSS-SCEEEECCTTSSSCSS-SCEEEEECTTCHHHHHHHHHHTB
T ss_pred HHHHHHHHHHcCCEEEEecchhcCCccCC-ee--ccccc-ceEEEEccCCCcccCC-CeEEEEECCHHHHHHHHHHHHHh
Confidence 89999999999999999999983 33333 11 22223 24455666 667654 7899999876 6 55543211
Q ss_pred c--------------ccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceee-------eccc
Q 011777 347 Q--------------FNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDV-------RGRG 405 (477)
Q Consensus 347 ~--------------~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v-------~g~g 405 (477)
+ +.++..+++.++++.+.++.++ +..++.+++.+++.+.|+++ +.+... +..+
T Consensus 217 ~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~l~--~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~ 290 (388)
T 1b9h_A 217 CGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLD--EQIAVRDERWTLLSRLLGAI----DGVVPQGGDVRADRNSH 290 (388)
T ss_dssp TTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTS----TTCEECCCCTTCCBCCC
T ss_pred CCCCccCccceeecccccCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccC----CCccccCCCcCCCccce
Confidence 0 1223356777666666665442 35566667777777776653 222111 2235
Q ss_pred eeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC-------------------------------CCEEEEeC
Q 011777 406 LMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH-------------------------------GNVFRIKP 454 (477)
Q Consensus 406 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-------------------------------~~~iRi~p 454 (477)
.++++.+.. .......++.+.|.++||.+.++... .+.+||..
T Consensus 291 ~~~~~~~~~------~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~ 364 (388)
T 1b9h_A 291 YMAMFRIPG------LTEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHH 364 (388)
T ss_dssp SEEEEECTT------CCHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEG
T ss_pred EEEEEEeCC------cCcccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecC
Confidence 677777621 01124567889999999999764210 13589988
Q ss_pred CCCC-cHHHHHHHHHHHHHHHhh
Q 011777 455 PMCF-TKDDADFLVDALDYSMSK 476 (477)
Q Consensus 455 ~~~~-t~e~i~~~l~~l~~~l~~ 476 (477)
...+ |++||+++++.|++++++
T Consensus 365 ~~~~~t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 365 RVLLAGEPELHATAEIIADAVAR 387 (388)
T ss_dssp GGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhh
Confidence 8788 999999999999998865
No 191
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.89 E-value=2.9e-21 Score=196.72 Aligned_cols=317 Identities=13% Similarity=0.069 Sum_probs=197.8
Q ss_pred eecCCcccccCCCCCHHHHHHHHHHHhhccccccccC--ChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHh
Q 011777 100 DAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYL--HHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARL 177 (477)
Q Consensus 100 D~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~--~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~ 177 (477)
||..+.. .++ .++++.+++.+.++... |. .+...++++.|+++++. +++++++||++|++.+++.+.
T Consensus 20 ~l~~~~p--~~~-~p~~~~~a~~~~~~~~~-----y~~~~~~~~~l~~~la~~~~~--~~v~~~~ggt~al~~~l~~l~- 88 (424)
T 2po3_A 20 PLLVGRP--NRI-DRARLYERLDRALDSQW-----LSNGGPLVREFEERVAGLAGV--RHAVATCNATAGLQLLAHAAG- 88 (424)
T ss_dssp CEETTCC--CCC-CHHHHHHHHHHHHHHTC-----CSSSCHHHHHHHHHHHHHHTS--SEEEEESCHHHHHHHHHHHHT-
T ss_pred cccccCC--CCC-ChHHHHHHHHHHHhcCC-----cccCCHHHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHcC-
Confidence 3444433 344 35799999998886532 33 36788999999999854 689999999999999999764
Q ss_pred ccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEe
Q 011777 178 STGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIA 257 (477)
Q Consensus 178 ~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~ 257 (477)
.++.|++.+++|++........ |...+.++... ..+..| +++|++.++ +++++|++
T Consensus 89 --~gd~Vlv~~~~~~~~~~~~~~~-------------G~~~~~v~~~~-~~~~~d----~~~l~~~i~----~~~~~v~~ 144 (424)
T 2po3_A 89 --LTGEVIMPSMTFAATPHALRWI-------------GLTPVFADIDP-DTGNLD----PDQVAAAVT----PRTSAVVG 144 (424)
T ss_dssp --CCSEEEEESSSCTHHHHHHHHT-------------TCEEEEECBCT-TTSSBC----HHHHGGGCC----TTEEEEEE
T ss_pred --CCCEEEECCCccHHHHHHHHHc-------------CCEEEEEecCC-CcCCcC----HHHHHHhhC----cCCcEEEE
Confidence 3488999999999876543222 22222221110 011111 467776664 36777776
Q ss_pred cccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc-CccCCCCCCccccccCCCcceee--ec--ccccCccceEEE
Q 011777 258 ETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT-GFGRTGSHYWGFETQGVIPDIVT--MA--KGIGNGLPLGAV 332 (477)
Q Consensus 258 epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-gfgr~G~~~~~~~~~gv~pDivt--~s--K~lg~G~pig~v 332 (477)
.+ ++|... .+++|.++|++||+++|+||+|+ |+.+.| .. .+..+|+++ || |++++ +++|++
T Consensus 145 ~~---~tG~~~----~l~~i~~la~~~~~~li~Dea~~~g~~~~~-~~-----~~~~~di~~~S~sk~K~l~~-~~~G~~ 210 (424)
T 2po3_A 145 VH---LWGRPC----AADQLRKVADEHGLRLYFDAAHALGCAVDG-RP-----AGSLGDAEVFSFHATKAVNA-FEGGAV 210 (424)
T ss_dssp EC---GGGCCC----CHHHHHHHHHHTTCEEEEECTTCTTCEETT-EE-----TTSSSSEEEEECCTTSSSCC-SSCEEE
T ss_pred EC---CCCCcC----CHHHHHHHHHHcCCEEEEECccccCCeECC-ee-----cccccCEEEEeCCCCCCccC-CCCeEE
Confidence 43 355443 49999999999999999999999 676555 22 122246665 44 77766 799999
Q ss_pred EeC-HHHHHhhcccccc------------cCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCce
Q 011777 333 VTT-PEIANVMAQKIQF------------NTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIG 399 (477)
Q Consensus 333 ~~~-~~~~~~~~~~~~~------------~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~ 399 (477)
+++ +++++.+...... .++..+++.+++++..++.+ ++..++.+++.+++.+.|.+ .+.+.
T Consensus 211 v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~--~~~~~~~~~~~~~l~~~L~~----~~g~~ 284 (424)
T 2po3_A 211 VTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAF--PEVIDRNRRNHAAYREHLAD----LPGVL 284 (424)
T ss_dssp EESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTCS----CTTEE
T ss_pred EeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcc----CCCcc
Confidence 999 8887766532111 11233566666666554432 23455555555555555443 22222
Q ss_pred eee-ccc-----eeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC-C----------------------CCEE
Q 011777 400 DVR-GRG-----LMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL-H----------------------GNVF 450 (477)
Q Consensus 400 ~v~-g~g-----~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~----------------------~~~i 450 (477)
... ..| .++.+.+..... .....++.+.|.++||.+.+... . .+.|
T Consensus 285 ~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l 359 (424)
T 2po3_A 285 VADHDRHGLNNHQYVIVEIDEATT-----GIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVL 359 (424)
T ss_dssp ECCGGGGSCCCCCCEEEEECHHHH-----SSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEE
T ss_pred ccCCCCCCccccEEEEEEECCccc-----hhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEE
Confidence 211 111 344455521000 00145678889999999876311 0 0127
Q ss_pred EEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 451 RIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 451 Ri~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
|+.+...++++|+++++++|++++++
T Consensus 360 ~l~~~~~~t~e~i~~~~~~L~~~~~~ 385 (424)
T 2po3_A 360 SLPTGTAIGDDDIRRVADLLRLCATR 385 (424)
T ss_dssp EECCSTTCCHHHHHHHHHHHHHHHHH
T ss_pred EeeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 77666889999999999999988753
No 192
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.88 E-value=7.9e-22 Score=202.66 Aligned_cols=311 Identities=14% Similarity=0.115 Sum_probs=196.7
Q ss_pred CCHHHHHHHHHH----HhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEc
Q 011777 113 CHPDVLNAIFEQ----SKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALR 188 (477)
Q Consensus 113 ~~p~v~~Av~~~----l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~ 188 (477)
.+|.|.++.... .+...+.+..+.++...+++++++++++. +.+++++||++|+..+++ ...+++.||+.+
T Consensus 104 ~~~~i~~a~~~~~~~~~~~~~~~Y~~~g~~~~~~l~~~la~~~g~--~~~i~~~sGt~al~~~l~---~~~~Gd~Vi~~~ 178 (464)
T 1ibj_A 104 MSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKA--DRAFCFTSGMAALSAVTH---LIKNGEEIVAGD 178 (464)
T ss_dssp SSCCCCCCSBCCCSSSSCCCSCSBTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHT---TSCTTCEEEEES
T ss_pred CCccHHhhhhhhhhcccccCCccccCCCCHHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHH---HhCCCCEEEEEC
Confidence 455666665432 11112222244567889999999999864 578899999999998876 234668899999
Q ss_pred cCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeee
Q 011777 189 NAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVE 268 (477)
Q Consensus 189 ~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~ 268 (477)
+.||+.......... ..|...+.++.. | .++++++++ +++++|++++++|++|.+.
T Consensus 179 ~~y~~~~~~~~~~~~---------~~G~~v~~v~~~-------d----~~~l~~~i~----~~tk~v~l~~p~NptG~v~ 234 (464)
T 1ibj_A 179 DVYGGSDRLLSQVVP---------RSGVVVKRVNTT-------K----LDEVAAAIG----PQTKLVWLESPTNPRQQIS 234 (464)
T ss_dssp SCCHHHHHHHHHTSG---------GGTCEEEEECTT-------S----HHHHHHHCC----SSEEEEEECSSCTTTCCCC
T ss_pred CCchhHHHHHHHHHH---------HcCCEEEEeCCC-------C----HHHHHHHhc----cCceEEEEeCCCCCCCEee
Confidence 999886432100000 012222222211 1 578888775 4789999999999999777
Q ss_pred CCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCc-cccccCCCccee--eecccccC--ccceEEEEeC-HHHHHhh
Q 011777 269 LAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYW-GFETQGVIPDIV--TMAKGIGN--GLPLGAVVTT-PEIANVM 342 (477)
Q Consensus 269 ~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~-~~~~~gv~pDiv--t~sK~lg~--G~pig~v~~~-~~~~~~~ 342 (477)
+ +++|.++|++||+++|+||+|.. | ..+ ..+ ++ .|++ +++|.+++ |+++|+++++ +++++.+
T Consensus 235 ~----l~~i~~la~~~gi~livDea~~~----g-~~~~~~~-~~--~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l 302 (464)
T 1ibj_A 235 D----IRKISEMAHAQGALVLVDNSIMS----P-VLSRPLE-LG--ADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEV 302 (464)
T ss_dssp C----HHHHHHHHHTTTCEEEEECTTTC----T-TTCCGGG-TT--CSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHH
T ss_pred c----HHHHHHHHHHcCCEEEEECCCcc----c-ccCChhh-cC--CEEEEECCcccccCCCCCcEEEEEEChHHHHHHH
Confidence 5 99999999999999999999973 2 111 222 33 5666 68899986 7899999998 4787777
Q ss_pred cccccccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHH------HHHHHhCCCce----eeeccceeEEE
Q 011777 343 AQKIQFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRL------RTLQERHDIIG----DVRGRGLMVGM 410 (477)
Q Consensus 343 ~~~~~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L------~~l~~~~~~~~----~v~g~g~~~~i 410 (477)
........++.+++.+.++.++++.+.. +...+++....+++.+.- .+...+++.+. ..++.|.++++
T Consensus 303 ~~~~~~~g~~~~~~~~~a~~~al~~~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~ 382 (464)
T 1ibj_A 303 YFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSF 382 (464)
T ss_dssp HHHHHHTTCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEE
T ss_pred HHHHHhcCCCCCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEE
Confidence 6433223345578888888888764321 122223333333222110 00001111111 12345778888
Q ss_pred EEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC-------------------------CCCCEEEEeCCCCCcHHHHHH
Q 011777 411 ELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG-------------------------LHGNVFRIKPPMCFTKDDADF 465 (477)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------------------------~~~~~iRi~p~~~~t~e~i~~ 465 (477)
++. .......+.+.|+..||.+..|. ...+++||++++ ||+++
T Consensus 383 ~l~--------~~~~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~----edi~~ 450 (464)
T 1ibj_A 383 ITG--------SVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI----EDVDD 450 (464)
T ss_dssp ECS--------CHHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS----SCHHH
T ss_pred EEC--------CHHHHHHHHHhcCcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC----CCHHH
Confidence 862 11223457777776787776553 114689998886 89999
Q ss_pred HHHHHHHHHhh
Q 011777 466 LVDALDYSMSK 476 (477)
Q Consensus 466 ~l~~l~~~l~~ 476 (477)
+++.|++++++
T Consensus 451 li~~L~~al~~ 461 (464)
T 1ibj_A 451 LISDLDIAFKT 461 (464)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 193
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.88 E-value=2.3e-21 Score=195.74 Aligned_cols=290 Identities=17% Similarity=0.088 Sum_probs=188.4
Q ss_pred ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCccccccc-ccCCCCC
Q 011777 130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGL-TALNTWK 208 (477)
Q Consensus 130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~-~~~~~~~ 208 (477)
+..+.+.++...+|+++|+++.+. +.+++++||++|+++++++ ..+++.||+.++.|||........ ...
T Consensus 59 ~~y~r~~~p~~~~l~~~la~l~g~--~~~~~~~sG~~Ai~~~~~l---~~~gd~Vi~~~~~y~~~~~~~~~~~~~~---- 129 (400)
T 3nmy_A 59 FEYSRTHNPTRFAYERCVAALEGG--TRAFAFASGMAATSTVMEL---LDAGSHVVAMDDLYGGTFRLFERVRRRT---- 129 (400)
T ss_dssp CCBTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHTT---SCTTCEEEEESSCCHHHHHHHHHTHHHH----
T ss_pred cccccCCCHHHHHHHHHHHHHhCC--CCEEEecCHHHHHHHHHHH---cCCCCEEEEeCCCchHHHHHHHHhhHhh----
Confidence 445567789999999999999865 4788999999999985442 235678999999998765433221 000
Q ss_pred CCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEE
Q 011777 209 YPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVC 288 (477)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gill 288 (477)
.|+....++. + | .++++++++ +++++|++|+++|++|.+.+ +++|.++|++||+++
T Consensus 130 -----~g~~~~~v~~------~-d----~~~l~~~i~----~~~~~v~~e~~~np~G~~~~----l~~i~~la~~~g~~l 185 (400)
T 3nmy_A 130 -----AGLDFSFVDL------T-D----PAAFKAAIR----ADTKMVWIETPTNPMLKLVD----IAAIAVIARKHGLLT 185 (400)
T ss_dssp -----HCCEEEEECT------T-S----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEE
T ss_pred -----cCeEEEEECC------C-C----HHHHHHHhc----cCCCEEEEECCCCCCCeeec----HHHHHHHHHHcCCEE
Confidence 0222222111 1 1 578888875 47899999999999998776 999999999999999
Q ss_pred EEcCcccCccCCCCCCccccccCCCcceeeecccccC-ccceEE--EEe-CHHHHHhhcccccccCCCCcHHHHHHHHHH
Q 011777 289 IADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGN-GLPLGA--VVT-TPEIANVMAQKIQFNTFGGNPVCSAGGLAV 364 (477)
Q Consensus 289 I~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~-G~pig~--v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~ 364 (477)
|+||+|+.. ... .. ..+|..+.+.+++|.++| |.++|+ ++. ++++.+.+....+..+...+|+.+++++..
T Consensus 186 ivDe~~~~~-~~~-~~---~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~ 260 (400)
T 3nmy_A 186 VVDNTFASP-MLQ-RP---LSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRG 260 (400)
T ss_dssp EEECTTTHH-HHC-CG---GGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHH
T ss_pred EEECCCccc-ccC-Ch---hhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence 999999732 111 11 223555556679999996 567655 443 677887776555555667788888888887
Q ss_pred HHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceee------------------eccceeEEEEEeeCCCCCCccHHHH
Q 011777 365 LRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDV------------------RGRGLMVGMELVTDRKEKTPAKAET 426 (477)
Q Consensus 365 l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v------------------~g~g~~~~i~~~~~~~~~~~~~~~~ 426 (477)
++.+. ...++..++.+++.+.|+ +++.+..+ +|.|.|+++++.. .....
T Consensus 261 l~~l~--~r~~~~~~~a~~l~~~L~----~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~-------~~~~~ 327 (400)
T 3nmy_A 261 LKTLP--LRMRAHCENALALAQWLE----THPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKG-------GFDAA 327 (400)
T ss_dssp HTTHH--HHHHHHHHHHHHHHHHHT----TCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT-------HHHHH
T ss_pred HhHHH--HHHHHHHHHHHHHHHHHH----cCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCC-------cHHHH
Confidence 76543 234445555555555543 34555544 7789999999842 11234
Q ss_pred HHHHHHHHHcCceeecc-------------------------CCCCCEEEEeCCCCCcHHHHHHHHHHH
Q 011777 427 AVLFEKLRELGVLVGKG-------------------------GLHGNVFRIKPPMCFTKDDADFLVDAL 470 (477)
Q Consensus 427 ~~~~~~l~~~Gv~v~~~-------------------------~~~~~~iRi~p~~~~t~e~i~~~l~~l 470 (477)
..+.+.|.-.++.+..| +...+.+|++..+...++.++.+.++|
T Consensus 328 ~~~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGle~~~dli~dl~~al 396 (400)
T 3nmy_A 328 KRFCEKTELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGIEDLGDLRGDLERAL 396 (400)
T ss_dssp HHHHHHCSSSEECSCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred HHHHHcCCcceEecCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCcCCHHHHHHHHHHHH
Confidence 45555554333222222 123478999887765555444433333
No 194
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.88 E-value=8.7e-21 Score=191.27 Aligned_cols=319 Identities=16% Similarity=0.091 Sum_probs=201.9
Q ss_pred CHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccC
Q 011777 114 HPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHG 193 (477)
Q Consensus 114 ~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG 193 (477)
+|++.+++.+.++.. +... ..+...++++.|+++++. +++++++||++|++.+++.+. ..+++.|++..++|++
T Consensus 11 ~~~v~~a~~~~~~~~-~~~~--~g~~~~~l~~~la~~~~~--~~v~~~~ggt~al~~~~~~l~-~~~gd~Vl~~~~~~~~ 84 (394)
T 1o69_A 11 GGNELKYIEEVFKSN-YIAP--LGEFVNRFEQSVKDYSKS--ENALALNSATAALHLALRVAG-VKQDDIVLASSFTFIA 84 (394)
T ss_dssp -CCHHHHHHHHHHHT-TTSC--TTHHHHHHHHHHHHHHCC--SEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCGG
T ss_pred CHHHHHHHHHHHHcC-CccC--CChHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHcC-CCCCCEEEECCCccHH
Confidence 467888888887652 1111 125578999999999854 789999999999999999763 2356789999999998
Q ss_pred CcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchh
Q 011777 194 GSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGY 273 (477)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~ 273 (477)
........ |...+.++... .+..| ++++++.++.. ++++++|++++. .|.. ..
T Consensus 85 ~~~~~~~~-------------g~~~~~v~~~~--~~~~d----~~~l~~~i~~~-~~~~~~v~~~~~---~G~~----~~ 137 (394)
T 1o69_A 85 SVAPICYL-------------KAKPVFIDCDE--TYNID----VDLLKLAIKEC-EKKPKALILTHL---YGNA----AK 137 (394)
T ss_dssp GTHHHHHT-------------TCEEEEECBCT--TSSBC----HHHHHHHHHHC-SSCCCEEEEECG---GGCC----CC
T ss_pred HHHHHHHc-------------CCEEEEEEeCC--CCCcC----HHHHHHHHhcc-cCCceEEEEECC---CCCh----hh
Confidence 86554432 12222222111 11112 57888888632 125778888763 4433 34
Q ss_pred HHHHHHHHHHhCcEEEEcCccc-CccCCCCCCccccccCCCcceeee--cccccCccceEEEEeC-HHHHHhhccccccc
Q 011777 274 LKLVYDIVRKAGGVCIADEVQT-GFGRTGSHYWGFETQGVIPDIVTM--AKGIGNGLPLGAVVTT-PEIANVMAQKIQFN 349 (477)
Q Consensus 274 l~~l~~l~~~~gillI~DEv~~-gfgr~G~~~~~~~~~gv~pDivt~--sK~lg~G~pig~v~~~-~~~~~~~~~~~~~~ 349 (477)
+++|.++|++||+++|+||+|+ |+.+.| ...+ .++ .+|+.+| +|.++ |.++|+++++ +++++.+......+
T Consensus 138 l~~i~~l~~~~~~~li~Dea~~~g~~~~~-~~~~--~~~-~~~~~s~s~~K~l~-~~~~G~~~~~~~~l~~~l~~~~~~~ 212 (394)
T 1o69_A 138 MDEIVEICKENDIVLIEDAAEALGSFYKN-KALG--TFG-EFGVYSYNGNKIIT-TSGGGMLIGKNKEKIEKARFYSTQA 212 (394)
T ss_dssp HHHHHHHHHHTTCEEEEECTTCTTCEETT-EETT--SSS-SEEEEECCTTSSSC-CSSCEEEEESCHHHHHHHHHHTBTC
T ss_pred HHHHHHHHHHcCCEEEEECcCcccceeCC-cccc--ccc-CcEEEEEeCCccCC-CCCceEEEECCHHHHHHHHHHHHhc
Confidence 9999999999999999999998 665544 2110 111 3688888 47665 4589999995 78877665321111
Q ss_pred --------------CCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeec-cce--eEEEEE
Q 011777 350 --------------TFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRG-RGL--MVGMEL 412 (477)
Q Consensus 350 --------------t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g-~g~--~~~i~~ 412 (477)
+++.+++.++++++.++.+ ++..++.+++.+++.+.|.++ -+. ...... .+. ++.+.+
T Consensus 213 ~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l--~~~~~~~~~~~~~l~~~L~~~-~~~--~~~~~~~~~~~~~~~i~~ 287 (394)
T 1o69_A 213 RENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVL--EQRVLKKREIYEWYKEFLGEY-FSF--LDELENSRSNRWLSTALI 287 (394)
T ss_dssp CCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTT-EEC--CCCCTTEECCCSSEEEEE
T ss_pred cccCccccccccCcccCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccc-ccc--cCCCCCCcceeEEEEEEe
Confidence 1124567777776666654 336678888888888888765 121 111110 122 345555
Q ss_pred eeCCC-----------CC--CccHHHHHHHHHHHHHcCceeeccCC-------CC---------------CEEEEeCCCC
Q 011777 413 VTDRK-----------EK--TPAKAETAVLFEKLRELGVLVGKGGL-------HG---------------NVFRIKPPMC 457 (477)
Q Consensus 413 ~~~~~-----------~~--~~~~~~~~~~~~~l~~~Gv~v~~~~~-------~~---------------~~iRi~p~~~ 457 (477)
..+.. .. .........+.+.|.++||.+.++.. .. ..+++.....
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (394)
T 1o69_A 288 NFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTA 367 (394)
T ss_dssp SCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTT
T ss_pred cchhhccccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCC
Confidence 31100 00 00012456788999999999987621 00 2355555667
Q ss_pred CcHHHHHHHHHHHHHHHh
Q 011777 458 FTKDDADFLVDALDYSMS 475 (477)
Q Consensus 458 ~t~e~i~~~l~~l~~~l~ 475 (477)
+|++|+++++++|+++++
T Consensus 368 ~t~edi~~~~~~l~~~~~ 385 (394)
T 1o69_A 368 MSKDDVYEISKLILKSIK 385 (394)
T ss_dssp CCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 899999999999998875
No 195
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.87 E-value=2.1e-20 Score=189.91 Aligned_cols=317 Identities=17% Similarity=0.066 Sum_probs=196.3
Q ss_pred CCHHHHHHHHHHHhhcccc---ccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEcc
Q 011777 113 CHPDVLNAIFEQSKLLQHA---TTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRN 189 (477)
Q Consensus 113 ~~p~v~~Av~~~l~~~~~~---~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~ 189 (477)
-+|++.+++.++++..... ...+..+...+++++|+++++. +.+++++||++|++.+++.++. .+++.|++..+
T Consensus 14 ~~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~--~~~i~~~~gt~al~~~~~~~~~-~~gd~Vl~~~~ 90 (418)
T 2c81_A 14 HSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGV--PYCVPTTSGSTALMLALEALGI-GEGDEVIVPSL 90 (418)
T ss_dssp CCHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHTTC-CTTCEEEEESS
T ss_pred CCHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHcCC-CCcCEEEECCC
Confidence 3689999999999874322 1122345588999999999865 3688899999999999987632 35678999999
Q ss_pred CccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeC
Q 011777 190 AYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVEL 269 (477)
Q Consensus 190 ~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~ 269 (477)
+|++........ |...+.++... ..+..| .+++++.++ +++++|++++ +.|...+
T Consensus 91 ~~~~~~~~~~~~-------------g~~~~~~~~~~-~~~~~d----~~~l~~~i~----~~~~~v~~~~---~~G~~~~ 145 (418)
T 2c81_A 91 TWIATATAVLNV-------------NALPVFVDVEA-DTYCID----PQLIKSAIT----DKTKAIIPVH---LFGSMAN 145 (418)
T ss_dssp SCTHHHHHHHHT-------------TCEEEEECBCT-TTCSBC----HHHHGGGCC----TTEEEECCBC---CTTCCCC
T ss_pred ccHhHHHHHHHc-------------CCEEEEEecCC-CCCCcC----HHHHHHhhC----CCCeEEEEeC---CcCCccc
Confidence 999886544322 22222221110 011112 467777665 3678887654 4554443
Q ss_pred CchhHHHHHHHHHHhCcEEEEcCcccCcc-CCCCCCccccccCCCcceeee--cccccCccceEEEEeC-HHHHHhhccc
Q 011777 270 APGYLKLVYDIVRKAGGVCIADEVQTGFG-RTGSHYWGFETQGVIPDIVTM--AKGIGNGLPLGAVVTT-PEIANVMAQK 345 (477)
Q Consensus 270 ~~~~l~~l~~l~~~~gillI~DEv~~gfg-r~G~~~~~~~~~gv~pDivt~--sK~lg~G~pig~v~~~-~~~~~~~~~~ 345 (477)
+++|.++|++||+++|+||+|+.+. ..+ ..+ ..++ ..++.+| +|.+++| ++|+++++ +++++.+...
T Consensus 146 ----~~~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~--~~~~-~~~~~s~s~~K~~~~g-~~g~~~~~~~~l~~~~~~~ 216 (418)
T 2c81_A 146 ----MDEINEIAQEHNLFVIEDCAQSHGSVWNN-QRA--GTIG-DIGAFSCQQGKVLTAG-EGGIIVTKNPRLFELIQQL 216 (418)
T ss_dssp ----HHHHHHHHHHTTCEEEEECTTCTTCEETT-EET--TSSS-SEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHH
T ss_pred ----HHHHHHHHHHCCCEEEEECcccccCccCC-Eec--cccc-ceEEEeccCCcccCCC-CeEEEEECCHHHHHHHHHH
Confidence 9999999999999999999999764 333 111 1111 2344566 8999987 99999995 7777665432
Q ss_pred cccc------------CCC--------------CcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCce
Q 011777 346 IQFN------------TFG--------------GNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIG 399 (477)
Q Consensus 346 ~~~~------------t~~--------------~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~ 399 (477)
...+ .|. .+++..+.+...++.+ ++..++.+++.+++.+.|.+ .+.+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~----~~g~~ 290 (418)
T 2c81_A 217 RADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQEL--DDKNAIREKNAMFLNDALSK----IDGIK 290 (418)
T ss_dssp HBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTT----STTEE
T ss_pred HHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcc----CCCcc
Confidence 1110 011 2344333333334322 34556666666666666644 32222
Q ss_pred ee-eccc----e--eEEEEEeeCCCCCCccHHHHHHHHHHHHHc-Cce---eeccCC-----------------------
Q 011777 400 DV-RGRG----L--MVGMELVTDRKEKTPAKAETAVLFEKLREL-GVL---VGKGGL----------------------- 445 (477)
Q Consensus 400 ~v-~g~g----~--~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~---v~~~~~----------------------- 445 (477)
.. ...+ . ++.+.+..... ......++.+.|.++ ||. +.++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 366 (418)
T 2c81_A 291 VMKRPPQVSRQTYYGYVFRFDPVKF----GGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKT 366 (418)
T ss_dssp ECCCCTTEEECCCSEEEEEECGGGT----TTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCC
T ss_pred cCCCCCCCcccccEEEEEEEccccc----cccCHHHHHHHHHHcCCCCcccccccccccccCchhccccccccccccccc
Confidence 11 1222 2 22344421000 001245788899999 999 765410
Q ss_pred --------C-------CCEEEEeCCCCC-cHHHHHHHHHHHHHHHhh
Q 011777 446 --------H-------GNVFRIKPPMCF-TKDDADFLVDALDYSMSK 476 (477)
Q Consensus 446 --------~-------~~~iRi~p~~~~-t~e~i~~~l~~l~~~l~~ 476 (477)
. .+.|||+++..+ |++||++++++|++++++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~ 413 (418)
T 2c81_A 367 EAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARK 413 (418)
T ss_dssp HHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHT
T ss_pred ccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHh
Confidence 0 148999999999 999999999999998865
No 196
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.87 E-value=9.8e-21 Score=192.61 Aligned_cols=290 Identities=15% Similarity=0.127 Sum_probs=188.7
Q ss_pred ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777 130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY 209 (477)
Q Consensus 130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~ 209 (477)
+....+.++...+++++|+++++. +..++++||++|++.+++.+ ..+++.||+..+.||+...........
T Consensus 50 ~~y~~~~~~~~~~l~~~la~~~g~--~~~v~~~sGt~A~~~~l~~~--~~~gd~vi~~~~~~~~~~~~~~~~~~~----- 120 (421)
T 2ctz_A 50 NIYSRIMNPTVDVLEKRLAALEGG--KAALATASGHAAQFLALTTL--AQAGDNIVSTPNLYGGTFNQFKVTLKR----- 120 (421)
T ss_dssp GSCBTTBCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHH--CCTTCEEEECSCCCHHHHHHHHTHHHH-----
T ss_pred CcccCCCChHHHHHHHHHHHHhCC--CceEEecCHHHHHHHHHHHH--hCCCCEEEEeCCCchHHHHHHHHHHHH-----
Confidence 334455677889999999999865 35678888999999999976 346788999999999876544221100
Q ss_pred CCCCCCeeeecC-CCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEE
Q 011777 210 PIPQGEIHHVVN-PDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVC 288 (477)
Q Consensus 210 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gill 288 (477)
.|+....+ +. + | .++++++++ +++++|++++++|++|.+.+ +++|.++|++||+++
T Consensus 121 ----~g~~~~~~~~~------~-d----~~~l~~~i~----~~~~~v~~~~~~n~~G~~~~----l~~i~~~a~~~g~~l 177 (421)
T 2ctz_A 121 ----LGIEVRFTSRE------E-R----PEEFLALTD----EKTRAWWVESIGNPALNIPD----LEALAQAAREKGVAL 177 (421)
T ss_dssp ----TTCEEEECCTT------C-C----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEE
T ss_pred ----cCCEEEEECCC------C-C----HHHHHHhhc----cCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEE
Confidence 12232222 11 1 1 578888876 47899999999999998777 999999999999999
Q ss_pred EEcCcccCccCCCCCCccccccCCCccee--eecccccC-ccceEEEEeC---HHH----HHhhccc---cc--------
Q 011777 289 IADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-GLPLGAVVTT---PEI----ANVMAQK---IQ-------- 347 (477)
Q Consensus 289 I~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G~pig~v~~~---~~~----~~~~~~~---~~-------- 347 (477)
|+||+|+++|+.+ ..+ +..+|++ +++|.+++ |.++|++++. +++ .+.+... .+
T Consensus 178 ivD~~~~~~g~~~-~~~-----~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~ 251 (421)
T 2ctz_A 178 IVDNTFGMGGYLL-RPL-----AWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAF 251 (421)
T ss_dssp EEECGGGGGGTSC-CGG-----GGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHH
T ss_pred EEECCcccccccC-Ccc-----ccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhc
Confidence 9999996677655 332 2347887 78899997 7899888774 122 1122110 00
Q ss_pred ---------------ccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceee-----------
Q 011777 348 ---------------FNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDV----------- 401 (477)
Q Consensus 348 ---------------~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v----------- 401 (477)
......+++.+++++..++.+. ...++..++.+++.+.|.+ ++.+..+
T Consensus 252 ~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~--~r~~~~~~~a~~l~~~L~~----~p~v~~v~~p~~~~~~~~ 325 (421)
T 2ctz_A 252 GELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLS--LRAERHVENTLHLAHWLLE----QPQVAWVNYPGLPHHPHH 325 (421)
T ss_dssp GGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHT----CTTEEEEECTTSTTCTTH
T ss_pred chhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcchHH--HHHHHHHHhHHHHHHHHHh----CCCeeEEECCCCCCCCCH
Confidence 0112557888777777776542 2234444566666665554 3333322
Q ss_pred --------eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeecc-------------------------CCCCC
Q 011777 402 --------RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKG-------------------------GLHGN 448 (477)
Q Consensus 402 --------~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-------------------------~~~~~ 448 (477)
++.|.++.+++... ......+.+.+...++.+..| +...+
T Consensus 326 ~~~~~~~~~~~g~ivsf~l~~~-------~~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~ 398 (421)
T 2ctz_A 326 DRAQKYFKGKPGAVLTFGLKGG-------YEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPE 398 (421)
T ss_dssp HHHHHHHTTCCCSEEEEEETTH-------HHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTT
T ss_pred HHHHHhccCCCceEEEEEeCCC-------HHHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCC
Confidence 46788999988421 123344555554334333222 11247
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777 449 VFRIKPPMCFTKDDADFLVDALDYSM 474 (477)
Q Consensus 449 ~iRi~p~~~~t~e~i~~~l~~l~~~l 474 (477)
.+|+++.+ +|++++++.|++++
T Consensus 399 ~vRlS~g~----e~~~~li~~l~~al 420 (421)
T 2ctz_A 399 MVRLSVGL----EHVEDLKAELKEAL 420 (421)
T ss_dssp EEEEECCS----SCHHHHHHHHHHHT
T ss_pred eEEEEeCC----CCHHHHHHHHHHHh
Confidence 89998664 57888888888775
No 197
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.87 E-value=2.8e-20 Score=187.53 Aligned_cols=295 Identities=15% Similarity=0.085 Sum_probs=189.1
Q ss_pred ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777 130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY 209 (477)
Q Consensus 130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~ 209 (477)
|....+.++...+++++|+++++.+ .+++++||+||++.+++ . ..++++||+..+.||+..........
T Consensus 47 ~~~~~~~~~~~~~lr~~la~~~g~~--~~i~~~sGt~a~~~al~-~--~~~gd~Vi~~~~~y~~~~~~~~~~~~------ 115 (393)
T 1n8p_A 47 YEYSRSQNPNRENLERAVAALENAQ--YGLAFSSGSATTATILQ-S--LPQGSHAVSIGDVYGGTHRYFTKVAN------ 115 (393)
T ss_dssp CCBTTTCCHHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHH-T--SCSSCEEEEESSCCHHHHHHHHHTST------
T ss_pred cceecCCChhHHHHHHHHHHHhCCC--cEEEECChHHHHHHHHH-H--cCCCCEEEEeCCCchHHHHHHHHHHH------
Confidence 3344566778889999999998653 67788889999999998 3 23567899999999875332100000
Q ss_pred CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHh----C
Q 011777 210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKA----G 285 (477)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~----g 285 (477)
..|+....++. + . ++++++++ +++++|++++++|++|.+.+ +++|.++|++| |
T Consensus 116 ---~~G~~v~~v~~--------~---d-~~l~~~i~----~~t~lv~~~~~~nptG~~~~----l~~i~~la~~~~~~~~ 172 (393)
T 1n8p_A 116 ---AHGVETSFTND--------L---L-NDLPQLIK----ENTKLVWIETPTNPTLKVTD----IQKVADLIKKHAAGQD 172 (393)
T ss_dssp ---TTCSCCEEESS--------H---H-HHHHHHSC----SSEEEEEECSSCTTTCCCCC----HHHHHHHHHHHTTTTT
T ss_pred ---HcCcEEEEeCC--------C---h-HHHHHhcc----cCceEEEEECCCCCcceecC----HHHHHHHHHHhCCCCC
Confidence 01222111111 1 1 45666664 46899999999999998876 99999999999 9
Q ss_pred cEEEEcCcccCccCCCCCCccccccCCCccee--eecccccC-ccce-EEEEeC-HHHHHhhcccccccCCCCcHHHHHH
Q 011777 286 GVCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-GLPL-GAVVTT-PEIANVMAQKIQFNTFGGNPVCSAG 360 (477)
Q Consensus 286 illI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G~pi-g~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aa 360 (477)
+++|+||+|+++.+. .++. ++ +|++ +++|.+++ |+|+ |+++++ +++++.+...........++..+++
T Consensus 173 ~~livD~a~~~~~~~--~~~~---~~--~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 245 (393)
T 1n8p_A 173 VILVVDNTFLSPYIS--NPLN---FG--ADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWL 245 (393)
T ss_dssp CEEEEECTTTHHHHC--CGGG---GT--CSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_pred CEEEEeCCccccccC--CHHH---cC--CeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 999999999976542 2321 23 5666 68899996 7999 999885 7888877643222223346777777
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHH---h--CCCce----------eeec-c-ceeEEEEEeeCCCCCCccH
Q 011777 361 GLAVLRVIDKERRQAHCADVGSHLLGRLRTLQE---R--HDIIG----------DVRG-R-GLMVGMELVTDRKEKTPAK 423 (477)
Q Consensus 361 a~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~---~--~~~~~----------~v~g-~-g~~~~i~~~~~~~~~~~~~ 423 (477)
+.++++.+. ...++..++.+.+.+.|.+... + ++.+. ..++ . |.++++.+.. ..
T Consensus 246 ~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~-------~~ 316 (393)
T 1n8p_A 246 THRGLKTLH--LRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKG-------GA 316 (393)
T ss_dssp HHHHHTTHH--HHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESS-------CH
T ss_pred HHhccchHH--HHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCC-------cH
Confidence 777776432 2234444455555555543210 0 11110 0133 5 7788888832 12
Q ss_pred HHHHHHHHHHHHcCceeecc-------------------------CCCCCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777 424 AETAVLFEKLRELGVLVGKG-------------------------GLHGNVFRIKPPMCFTKDDADFLVDALDYSM 474 (477)
Q Consensus 424 ~~~~~~~~~l~~~Gv~v~~~-------------------------~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l 474 (477)
.....+...+...++.+..| +...+.+||++....++++|+.+.++|+++.
T Consensus 317 ~~~~~~l~~l~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~~ 392 (393)
T 1n8p_A 317 EAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQAT 392 (393)
T ss_dssp HHHHHHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 23455555554334332211 1114789999999999999999999998753
No 198
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.86 E-value=3e-20 Score=189.53 Aligned_cols=292 Identities=14% Similarity=0.102 Sum_probs=190.1
Q ss_pred ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777 130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY 209 (477)
Q Consensus 130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~ 209 (477)
|....+.++...+++++|+++++. +..++++||++|++.+++.... ++++||+.++.|++..........
T Consensus 106 ~~y~r~~~~~~~~l~~~lA~l~g~--~~~v~~~sG~~Ai~~al~~l~~--~Gd~Vi~~~~~y~~~~~~~~~~~~------ 175 (445)
T 1qgn_A 106 FEYGRYGNPTTVVLEEKISALEGA--ESTLLMASGMCASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETILP------ 175 (445)
T ss_dssp CCBGGGCCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHHSC--SSCEEEEETTSCHHHHHHHHHTGG------
T ss_pred ccccCCCChHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHHhC--CCCEEEEcCCCchhHHHHHHHHHH------
Confidence 444556788899999999999865 3667788899999999985532 457899999999875332110000
Q ss_pred CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCe-eEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEE
Q 011777 210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKV-AGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVC 288 (477)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~-a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gill 288 (477)
..|+....++. + | +++++++++ +++ ++|++|+++|++|.+.+ +++|.++|++||+++
T Consensus 176 ---~~G~~v~~v~~------~-d----~~~l~~ai~----~~tv~lV~le~p~NptG~v~d----l~~I~~la~~~g~~l 233 (445)
T 1qgn_A 176 ---KMGITATVIDP------A-D----VGALELALN----QKKVNLFFTESPTNPFLRCVD----IELVSKLCHEKGALV 233 (445)
T ss_dssp ---GGTCEEEEECS------S-C----HHHHHHHHH----HSCEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEE
T ss_pred ---HcCCEEEEeCC------C-C----HHHHHHHhc----cCCCCEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEE
Confidence 01222222221 1 1 578888887 245 89999999999998776 999999999999999
Q ss_pred EEcCcccCccCCCCCCccccccCCCcceee--ecccccC-c-cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHH
Q 011777 289 IADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGN-G-LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAV 364 (477)
Q Consensus 289 I~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G-~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~ 364 (477)
|+||+|+.+ ... ...+..+|+++ ++|.+++ | +++|++++++++++.+...........+++.+..++..
T Consensus 234 ivD~a~~~~-~~~------~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~~~g~~~~~~~a~~~~~~ 306 (445)
T 1qgn_A 234 CIDGTFATP-LNQ------KALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRG 306 (445)
T ss_dssp EEECTTTCT-TTC------CTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_pred EEECCCccc-ccC------CccccCCEEEEECCcccccccccceEEEEEECHHHHHHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 999999732 111 22334578775 7899986 4 57999999999888775432211222467776666666
Q ss_pred HHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCce------------------eeeccceeEEEEEeeCCCCCCccHHHH
Q 011777 365 LRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIG------------------DVRGRGLMVGMELVTDRKEKTPAKAET 426 (477)
Q Consensus 365 l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~------------------~v~g~g~~~~i~~~~~~~~~~~~~~~~ 426 (477)
++.+. ...++..++.+++.+.|.+. +.+. ..++.|.++++++.. .....
T Consensus 307 l~~l~--~r~~~~~~~a~~l~~~L~~~----p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~-------~~~~~ 373 (445)
T 1qgn_A 307 MKTLH--LRVQQQNSTALRMAEILEAH----PKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDG-------DLLTT 373 (445)
T ss_dssp GGGHH--HHHHHHHHHHHHHHHHHHTC----TTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESS-------CHHHH
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHhcC----CCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECC-------CHHHH
Confidence 65442 22344444555666665543 3221 113578889998842 11234
Q ss_pred HHHHHHHHHcCceeecc-------------------------CCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777 427 AVLFEKLRELGVLVGKG-------------------------GLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL 477 (477)
Q Consensus 427 ~~~~~~l~~~Gv~v~~~-------------------------~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l 477 (477)
..+.+.|...++.+..| +...+.|||+.. .||++.+++.|+++++++
T Consensus 374 ~~~l~~l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG----~Edid~li~~L~~al~~~ 445 (445)
T 1qgn_A 374 AKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG----VEDFDDLKADILQALDSI 445 (445)
T ss_dssp HHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC----SSCHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHHHhhC
Confidence 55666554334433222 122478999765 468999999999998754
No 199
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.86 E-value=2.1e-20 Score=188.99 Aligned_cols=291 Identities=14% Similarity=0.031 Sum_probs=189.8
Q ss_pred cccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCC
Q 011777 133 TIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIP 212 (477)
Q Consensus 133 ~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~ 212 (477)
..+.++...+|+++|+++++.. ..++++||++|+..+++ . ..++++|++.++.||+..........
T Consensus 62 ~r~~~p~~~~l~~~la~~~g~~--~~i~~~sG~~ai~~~~~-l--~~~gd~Vl~~~~~y~~~~~~~~~~~~--------- 127 (403)
T 3cog_A 62 SRSGNPTRNCLEKAVAALDGAK--YCLAFASGLAATVTITH-L--LKAGDQIICMDDVYGGTNRYFRQVAS--------- 127 (403)
T ss_dssp ----CHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHT-T--SCTTCEEEEESSCCHHHHHHHHHTGG---------
T ss_pred cCCCCchHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHH-H--hCCCCEEEEeCCCcchHHHHHHHHHH---------
Confidence 3567788899999999998653 56667788999999988 3 34567899999999985332111100
Q ss_pred CCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhC-cEEEEc
Q 011777 213 QGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAG-GVCIAD 291 (477)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g-illI~D 291 (477)
..|+....++.. | .+++++.++ +++++|++++++|++|.+.+ +++|.++|++|| +++|+|
T Consensus 128 ~~G~~v~~v~~~-------d----~~~l~~~i~----~~t~~v~~~~p~nptG~~~~----l~~i~~la~~~g~~~livD 188 (403)
T 3cog_A 128 EFGLKISFVDCS-------K----IKLLEAAIT----PETKLVWIETPTNPTQKVID----IEGCAHIVHKHGDIILVVD 188 (403)
T ss_dssp GGTCEEEEECTT-------S----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHTSSSCCEEEEE
T ss_pred HcCCEEEEECCC-------C----HHHHHHhcC----cCCeEEEEECCCCCCCeeeC----HHHHHHHHHHcCCCEEEEE
Confidence 012222222211 1 477888775 47889999999999998776 999999999999 999999
Q ss_pred CcccCccCCCCCCccccccCCCccee--eecccccC-c-cceEEEEeC-HHHHHhhcccccccCCCCcHHHHHHHHHHHH
Q 011777 292 EVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-G-LPLGAVVTT-PEIANVMAQKIQFNTFGGNPVCSAGGLAVLR 366 (477)
Q Consensus 292 Ev~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G-~pig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~ 366 (477)
|+|+++.. + ..+ +..+|++ +++|.+++ | .++|+++++ +++++.+.......+...+++.+.+++..++
T Consensus 189 ~~~~~~~~-~-~~~-----~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~ 261 (403)
T 3cog_A 189 NTFMSPYF-Q-RPL-----ALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLK 261 (403)
T ss_dssp CTTTCTTT-C-CTT-----TTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT
T ss_pred CCCccccc-C-Ccc-----ccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhh
Confidence 99986532 2 121 2346766 68899995 4 689999995 7888877654444455678898888888876
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHH----------HHhCCCce----eeeccceeEEEEEeeCCCCCCccHHHHHHHHHH
Q 011777 367 VIDKERRQAHCADVGSHLLGRLRTL----------QERHDIIG----DVRGRGLMVGMELVTDRKEKTPAKAETAVLFEK 432 (477)
Q Consensus 367 ~l~~~~~~~~~~~~~~~l~~~L~~l----------~~~~~~~~----~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~ 432 (477)
.+. ...++..++...+.+.|++. ...++... ..++.|.++.+.+... .....+.
T Consensus 262 ~l~--~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~----------~~~~~~~ 329 (403)
T 3cog_A 262 TLH--VRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGT----------LQHAEIF 329 (403)
T ss_dssp THH--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSC----------HHHHHHH
T ss_pred HHH--HHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCC----------HHHHHHH
Confidence 542 22333344444444444332 11111111 1234588888876311 1234555
Q ss_pred HHHcCceeec---c-------------------------CCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777 433 LRELGVLVGK---G-------------------------GLHGNVFRIKPPMCFTKDDADFLVDALDYSMS 475 (477)
Q Consensus 433 l~~~Gv~v~~---~-------------------------~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~ 475 (477)
+.+.|+++.. | +...+.+||++.+..++++|+.+.+.|+++++
T Consensus 330 l~~~~i~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~~~ 400 (403)
T 3cog_A 330 LKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAAHP 400 (403)
T ss_dssp HHHCSSSEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHCC
T ss_pred HHhCCcceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHhhc
Confidence 6677875432 1 11247899999999999999998888887654
No 200
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.86 E-value=1.2e-19 Score=182.59 Aligned_cols=305 Identities=13% Similarity=0.107 Sum_probs=196.9
Q ss_pred CCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHH-----hccCCceEEEE
Q 011777 113 CHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMAR-----LSTGNLGMIAL 187 (477)
Q Consensus 113 ~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar-----~~~~~~~ii~~ 187 (477)
-+|++.+++.++++...+ +..+...++++.++++++. +.++|++||++|++.+++.++ ...++++|++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~----~~~~~~~~l~~~la~~~~~--~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~ 86 (390)
T 3b8x_A 13 WDDLEYKAIQSVLDSKMF----TMGEYVKQYETQFAKTFGS--KYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVP 86 (390)
T ss_dssp CCHHHHHHHHHHHHHTCC----SSCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEE
T ss_pred CCHHHHHHHHHHHHcCCC----CCChHHHHHHHHHHHHHCC--CcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEEC
Confidence 378999999999876432 3467788999999999865 478999999999999998763 13456789999
Q ss_pred ccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCee
Q 011777 188 RNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAV 267 (477)
Q Consensus 188 ~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~ 267 (477)
.++||+........+ ...+.++.... .+..| +++++++++ +++++|++.+. .|..
T Consensus 87 ~~~~~~~~~~~~~~g-------------~~~~~~~~~~~-~~~~d----~~~l~~~i~----~~~~~v~~~~~---~g~~ 141 (390)
T 3b8x_A 87 AVSWSTTYYPLQQYG-------------LRVKFVDIDIN-TLNID----IESLKEAVT----DSTKAILTVNL---LGNP 141 (390)
T ss_dssp SSSCHHHHHHHHHTT-------------CEEEEECBCTT-TCSBC----HHHHHHHCC----TTEEEEEEECG---GGCC
T ss_pred CCCcHHHHHHHHHcC-------------CEEEEEecCcc-ccCcC----HHHHHHHhC----cCCeEEEEECC---ccCh
Confidence 999998766543321 11111111100 01112 578888775 35777777532 2333
Q ss_pred eCCchhHHHHHHHHHHhCcEEEEcCccc-CccCCCCCCccccccCCCcceeeecccccCcc---ceEEEEeCH-HHHHhh
Q 011777 268 ELAPGYLKLVYDIVRKAGGVCIADEVQT-GFGRTGSHYWGFETQGVIPDIVTMAKGIGNGL---PLGAVVTTP-EIANVM 342 (477)
Q Consensus 268 ~~~~~~l~~l~~l~~~~gillI~DEv~~-gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~---pig~v~~~~-~~~~~~ 342 (477)
..+++|.++|++||+++|+||+|+ |... ....+|..+|+.++||..+.++ ..|++++++ ++.+.+
T Consensus 142 ----~~~~~i~~l~~~~~~~li~D~a~~~g~~~------~~~~~g~~~~~~~~s~~~~k~~~~g~gG~~~~~~~~l~~~~ 211 (390)
T 3b8x_A 142 ----NNFDEINKIIGGRDIILLEDNCESMGATF------NNKCAGTFGLMGTFSSFYSNHIATMEGGCIVTDDEEIYHIL 211 (390)
T ss_dssp ----CCHHHHHHHHTTSCCEEEEECTTCTTCEE------TTEETTSSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHH
T ss_pred ----hhHHHHHHHHHHcCCEEEEECcCcccCEE------CCcccccccceEEEEccCCCCCccCCceEEEeCCHHHHHHH
Confidence 339999999999999999999998 3222 2245677789988876544211 338888875 665543
Q ss_pred cccc-c------------------------------ccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHH
Q 011777 343 AQKI-Q------------------------------FNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTL 391 (477)
Q Consensus 343 ~~~~-~------------------------------~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l 391 (477)
.... + +.++..+++.++++++.++.+ ++..++.+++.+++.+.|+++
T Consensus 212 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l--~~~~~~~~~~~~~l~~~L~~~ 289 (390)
T 3b8x_A 212 LCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKL--PRFISVRRKNAEYFLDKFKDH 289 (390)
T ss_dssp HHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCC
Confidence 2211 0 122336788888888877655 346667777777777776543
Q ss_pred HHhCCCceeee--cccee--EEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeecc---CC--C----C-----------
Q 011777 392 QERHDIIGDVR--GRGLM--VGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKG---GL--H----G----------- 447 (477)
Q Consensus 392 ~~~~~~~~~v~--g~g~~--~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~---~~--~----~----------- 447 (477)
+.+.... ..+.+ +.+.+..+ .......+.+.|.++||.+.+. .. . .
T Consensus 290 ----~~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (390)
T 3b8x_A 290 ----PYLDVQQETGESSWFGFSFIIKKD------SGVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVD 359 (390)
T ss_dssp ----SSEEECCCCSBCCCCEEEEEECTT------SCCCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCH
T ss_pred ----CCcccCCCCCCcccEEEEEEecCc------CcccHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCCh
Confidence 2221111 12222 34444210 0012457888899999988752 10 1 0
Q ss_pred -------CEEEEeCCCCCcHHHHHHHHHHH
Q 011777 448 -------NVFRIKPPMCFTKDDADFLVDAL 470 (477)
Q Consensus 448 -------~~iRi~p~~~~t~e~i~~~l~~l 470 (477)
+.+||.....+|++||+++++.|
T Consensus 360 ~~~~~~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 360 NAEYLDKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp HHHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred HHHHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 25999999999999999999876
No 201
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.86 E-value=1.4e-20 Score=186.91 Aligned_cols=309 Identities=9% Similarity=0.002 Sum_probs=188.7
Q ss_pred CCHHHHHHHHHHHhhcc------ccc---cccCChHHHHHHHHHHhhCCCC-CCEEEEeCCh-HHHHHHHHHHHHhccCC
Q 011777 113 CHPDVLNAIFEQSKLLQ------HAT---TIYLHHAIADFAEALASKMPGN-LKVVYFVNSG-TEANELAMLMARLSTGN 181 (477)
Q Consensus 113 ~~p~v~~Av~~~l~~~~------~~~---~~~~~~~~~~l~~~La~~~~~~-~~~v~~~~sG-seA~~~Al~~ar~~~~~ 181 (477)
.+|+|++++.+.++... +.. .....+...+++++++++++.. .++|+|++|+ ++|+++++.......++
T Consensus 14 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~~~~~~ 93 (360)
T 1w23_A 14 LPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKGTI 93 (360)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTTCE
T ss_pred CCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhcCCCCc
Confidence 68999999998875420 101 0011234678999999998764 3589999988 99999988755332112
Q ss_pred c-eEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCc-CCCCCCCHHHHHHHHHH-HHhccCCCCeeEEEec
Q 011777 182 L-GMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPY-HGSFGSDAARYAQDLQD-HIDFGTSGKVAGFIAE 258 (477)
Q Consensus 182 ~-~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~le~-~i~~~~~~~~a~vi~e 258 (477)
. .|+....+|+. ...+ .. .| ..+.++... ....+ .+++++ .++ +++++|+++
T Consensus 94 g~~vi~~~~~~~~-~~~~-~~------------~g-~~~~v~~~~~~~~~d------~~~l~~~~i~----~~~k~v~~~ 148 (360)
T 1w23_A 94 GNYVLTGSWSEKA-LKEA-KL------------LG-ETHIAASTKANSYQS------IPDFSEFQLN----ENDAYLHIT 148 (360)
T ss_dssp EEEEECSHHHHHH-HHHH-HT------------TS-EEEEEEECGGGTSCS------CCCGGGCCCC----TTEEEEEEE
T ss_pred ccEEEecchhHHH-HHHH-HH------------hC-CeEEeecccccCcCC------ccchHhhccC----CCCCEEEEe
Confidence 2 23332222221 1111 00 02 111111110 00011 244555 443 467888888
Q ss_pred ccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceee--ecccccCccceEEEEeCH
Q 011777 259 TIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGNGLPLGAVVTTP 336 (477)
Q Consensus 259 pi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~pig~v~~~~ 336 (477)
++++++|.+.+ +|+++||+++|+||+|+.+... ..+..+ |+++ ++|.++. .++|++++++
T Consensus 149 ~~~nptG~~~~---------~i~~~~~~~li~D~a~~~~~~~----~~~~~~----di~~~s~sK~~~~-~G~G~~~~~~ 210 (360)
T 1w23_A 149 SNNTIYGTQYQ---------NFPEINHAPLIADMSSDILSRP----LKVNQF----GMIYAGAQKNLGP-SGVTVVIVKK 210 (360)
T ss_dssp SEETTTTEECS---------SCCCCCSSCEEEECTTTTTSSC----CCGGGC----SEEEEETTTTTSC-TTCEEEEEEH
T ss_pred CCCCCcceecc---------cccccCCceEEEechhhcCCCC----cCcccC----CEEEEEcccccCC-CCcEEEEEcH
Confidence 88888887654 2333899999999999854321 122222 5554 6699974 2489999999
Q ss_pred HHHHhhcccc-----------cccCC-CCcHHHHHHHHHHHHhhchh----hHHHHHHHHHHHHHHHHHHHHHhCC-Cce
Q 011777 337 EIANVMAQKI-----------QFNTF-GGNPVCSAGGLAVLRVIDKE----RRQAHCADVGSHLLGRLRTLQERHD-IIG 399 (477)
Q Consensus 337 ~~~~~~~~~~-----------~~~t~-~~~~~~~aaa~a~l~~l~~~----~~~~~~~~~~~~l~~~L~~l~~~~~-~~~ 399 (477)
++++.+.... ...++ +.+..+++++.++++.+.++ +..++.+++.+++.+.|+++ + ...
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~ 286 (360)
T 1w23_A 211 DLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDES----NGFYV 286 (360)
T ss_dssp HHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTT----TTSSE
T ss_pred HHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc----cCccc
Confidence 9887665422 11222 34667777777888766443 34555666666666666543 3 212
Q ss_pred ee--e-cc-ceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777 400 DV--R-GR-GLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMS 475 (477)
Q Consensus 400 ~v--~-g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~ 475 (477)
.. + .. +.++++.+ +......++.+.|.++||.+.++....+++||+++...+++++++++++|+++++
T Consensus 287 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~gi~~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~~ 358 (360)
T 1w23_A 287 GHAEKGSRSLMNVTFNL--------RNEELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKE 358 (360)
T ss_dssp ESSCGGGBCSSEEEEEC--------SSHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred ccCCchhccCcEEEEEc--------CCCccHHHHHHHHHHCCeeeecCCCCCCeEEEEecCCCCHHHHHHHHHHHHHHHh
Confidence 11 2 12 44777765 2223356788889999999988754567899999988899999999999999876
Q ss_pred h
Q 011777 476 K 476 (477)
Q Consensus 476 ~ 476 (477)
+
T Consensus 359 ~ 359 (360)
T 1w23_A 359 N 359 (360)
T ss_dssp H
T ss_pred h
Confidence 5
No 202
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.85 E-value=4.3e-19 Score=184.73 Aligned_cols=313 Identities=14% Similarity=0.062 Sum_probs=185.5
Q ss_pred HHHHHHHHHhhCCCC--CCEEEEeCChHHHHHHHHHHHHhc-------cC----Cc-eEEEEccCccCCcccccccccCC
Q 011777 140 IADFAEALASKMPGN--LKVVYFVNSGTEANELAMLMARLS-------TG----NL-GMIALRNAYHGGSSGTIGLTALN 205 (477)
Q Consensus 140 ~~~l~~~La~~~~~~--~~~v~~~~sGseA~~~Al~~ar~~-------~~----~~-~ii~~~~~yhG~~~~~~~~~~~~ 205 (477)
..++.++++++++.+ .+.++|++||||||..|++.++.. .| .+ .|++.+.+|+ ....+....+..
T Consensus 134 e~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~-s~~~~~~~~g~g 212 (504)
T 2okj_A 134 EQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHY-SIKKAGAALGFG 212 (504)
T ss_dssp HHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCT-HHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchH-HHHHHHHHcCCC
Confidence 456667788887655 568999999999999999998752 23 13 4555444443 322222221110
Q ss_pred CCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc--CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHH
Q 011777 206 TWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG--TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRK 283 (477)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~ 283 (477)
...+..++... .... | .++|+++|+.. ...++++|++...+++.|.+.+ +++|.++|++
T Consensus 213 -------~~~v~~v~~~~--~~~~--d----~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~----l~~I~~la~~ 273 (504)
T 2okj_A 213 -------TDNVILIKCNE--RGKI--I----PADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADICEK 273 (504)
T ss_dssp -------GGGEEEECBCT--TSCB--C----HHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC----HHHHHHHHHH
T ss_pred -------cccEEEEecCC--CCCC--C----HHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHH
Confidence 00223333211 1111 2 57888887621 1225788888877777887766 9999999999
Q ss_pred hCcEEEEcCcccCccCCCCCCccccccCC-Ccceeeec--ccccCccceEEEEeCH-HHHHhh-cc---cc-cccC----
Q 011777 284 AGGVCIADEVQTGFGRTGSHYWGFETQGV-IPDIVTMA--KGIGNGLPLGAVVTTP-EIANVM-AQ---KI-QFNT---- 350 (477)
Q Consensus 284 ~gillI~DEv~~gfgr~G~~~~~~~~~gv-~pDivt~s--K~lg~G~pig~v~~~~-~~~~~~-~~---~~-~~~t---- 350 (477)
||+++|+|++|.++.... .-+.....++ .+|+++++ |.+++++++|++++++ ++++.. .. .. ..++
T Consensus 274 ~g~~lhvD~a~~~~~~~~-~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 352 (504)
T 2okj_A 274 YNLWLHVDAAWGGGLLMS-RKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDV 352 (504)
T ss_dssp HTCEEEEEETTGGGGGGC-TTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCG
T ss_pred cCCEEEEehhhhhHHHhC-HhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCcccccC
Confidence 999999999999875432 1111233344 57888775 9998778999999986 465432 11 11 0111
Q ss_pred ------------CCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceee---eccceeEEEEEeeC
Q 011777 351 ------------FGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDV---RGRGLMVGMELVTD 415 (477)
Q Consensus 351 ------------~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v---~g~g~~~~i~~~~~ 415 (477)
...+.+.+.++++++..-.-++..++..++.+++.+.|+++ +.+..+ ...+.++.+.+...
T Consensus 353 ~~~~~~~~~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~----~~~~~~~~~~p~~~~v~f~~~~~ 428 (504)
T 2okj_A 353 SYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR----EEFEMVFNGEPEHTNVCFWYIPQ 428 (504)
T ss_dssp GGCCGGGSSCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----TTEEESSSSCCSSSCEEEEECCG
T ss_pred cCCcccCCCCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC----CCEEEEecCCCCeEEEEEEEeCc
Confidence 01246666666666542112345566666677776666543 222211 13344455544321
Q ss_pred CC-C-CCcc------HHHHHHHHHHHHHcCcee-eccCCCC--CEEEEeCC-CCCcHHHHHHHHHHHHHHHhhC
Q 011777 416 RK-E-KTPA------KAETAVLFEKLRELGVLV-GKGGLHG--NVFRIKPP-MCFTKDDADFLVDALDYSMSKL 477 (477)
Q Consensus 416 ~~-~-~~~~------~~~~~~~~~~l~~~Gv~v-~~~~~~~--~~iRi~p~-~~~t~e~i~~~l~~l~~~l~~l 477 (477)
.. . .... ......+.+.|.++|+++ .+....+ +++||++. ..+|++||++++++|+++++++
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 502 (504)
T 2okj_A 429 SLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 502 (504)
T ss_dssp GGSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 00 0 0000 011356888899999644 3222222 58999985 7789999999999999987653
No 203
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.85 E-value=1.1e-19 Score=185.88 Aligned_cols=325 Identities=18% Similarity=0.079 Sum_probs=200.4
Q ss_pred CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHH
Q 011777 94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAML 173 (477)
Q Consensus 94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~ 173 (477)
+|+.+|.+.... -++++.+++.+++.... .+..+...++++.|+++++. +.++|++||++|++.+++
T Consensus 29 ~~~~~i~~~~~~-------~~~~~~~a~~~~~~~~~----~~~~~~~~~l~~~la~~~g~--~~~i~~~sGt~a~~~al~ 95 (437)
T 3bb8_A 29 AGKSVVPPSGKV-------IGTKELQLMVEASLDGW----LTTGRFNDAFEKKLGEYLGV--PYVLTTTSGSSANLLALT 95 (437)
T ss_dssp TTTSCBCSCCCC-------CCHHHHHHHHHHHHHCC----CBSCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHH
T ss_pred CCCccccCCCCC-------CCHHHHHHHHHHHHcCC----cCCChHHHHHHHHHHHHHCC--CcEEEeCCHHHHHHHHHH
Confidence 356666653221 26899999999887643 23456788999999999865 478999999999999998
Q ss_pred HHH------h-ccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhc
Q 011777 174 MAR------L-STGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF 246 (477)
Q Consensus 174 ~ar------~-~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~ 246 (477)
.+. . ..++++|++..++||+........ |...+.++... ..+..| ++++++.++
T Consensus 96 ~l~~~~~~~~~~~~gd~Vi~~~~~~~~~~~~~~~~-------------g~~~~~v~~~~-~~~~~d----~~~l~~~i~- 156 (437)
T 3bb8_A 96 ALTSPKLGVRALKPGDEVITVAAGFPTTVNPTIQN-------------GLIPVFVDVDI-PTYNVN----ASLIEAAVS- 156 (437)
T ss_dssp HTTCGGGGGGSCCTTCEEEECSSSCHHHHHHHHHT-------------TCEEEECCEET-TTTEEC----GGGHHHHCC-
T ss_pred HhhhcccccccCCCcCEEEECCCCcHHHHHHHHHc-------------CCEEEEEeccC-ccCCcC----HHHHHHhcC-
Confidence 763 1 234578999999999876554332 11222111110 001111 367777775
Q ss_pred cCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc-CccCCCCCCccccccCCCcceee--ec--c
Q 011777 247 GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT-GFGRTGSHYWGFETQGVIPDIVT--MA--K 321 (477)
Q Consensus 247 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-gfgr~G~~~~~~~~~gv~pDivt--~s--K 321 (477)
+++++|++... .|.. ..+++|.++|++||+++|+||+|+ |....+ ...+..+|+++ |+ |
T Consensus 157 ---~~~~~v~~~~~---~g~~----~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~------~~~~~~~d~~~~s~~~~k 220 (437)
T 3bb8_A 157 ---DKTKAIMIAHT---LGNL----FDLAEVRRVADKYNLWLIEDCCDALGSTYDG------KMAGTFGDIGTVSFYPAK 220 (437)
T ss_dssp ---TTEEEEEEECG---GGCC----CCHHHHHHHHHHHTCEEEEECTTCTTCEETT------EETTSSSSEEEEECSTTS
T ss_pred ---CCCeEEEEeCC---CCCh----hcHHHHHHHHHHcCCEEEEECccccCceECC------eecccccCEEEEECcCCc
Confidence 35777776432 2323 339999999999999999999998 332222 23344468754 43 5
Q ss_pred cccCccceEEEEeCHHHHH-hhcc---cc------------------------------------cccCCCCcHHHHHHH
Q 011777 322 GIGNGLPLGAVVTTPEIAN-VMAQ---KI------------------------------------QFNTFGGNPVCSAGG 361 (477)
Q Consensus 322 ~lg~G~pig~v~~~~~~~~-~~~~---~~------------------------------------~~~t~~~~~~~~aaa 361 (477)
.++ |.+.|+++++++.+. .+.. .. .+.++..+++.++++
T Consensus 221 ~l~-~g~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~ 299 (437)
T 3bb8_A 221 HIT-MGEGGAVFTQSAELKSIIESFRDWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACG 299 (437)
T ss_dssp SSC-CSSCEEEEESCHHHHHHHHHHHBTTBCC----------------CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHHH
T ss_pred CCC-CCCeEEEEeCCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccCcccCCCHHHHHHH
Confidence 554 456799999855433 2111 00 011123458888888
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHH--hCCCceeeeccce-eEEEEEeeCCCCCCccHHHHHHHHHHHHHcCc
Q 011777 362 LAVLRVIDKERRQAHCADVGSHLLGRLRTLQE--RHDIIGDVRGRGL-MVGMELVTDRKEKTPAKAETAVLFEKLRELGV 438 (477)
Q Consensus 362 ~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~--~~~~~~~v~g~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv 438 (477)
+++|+.+ ++..++.+++.++++++|.++.. .++.....+..+. .+.+.+... .......+.+.|.++||
T Consensus 300 l~~l~~~--~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~L~~~GI 371 (437)
T 3bb8_A 300 LAQLERI--EEFVEKRKANFKYLKDALQSCADFIELPEATENSDPSWFGFPITLKED------SGVSRIDLVKFLDEAKV 371 (437)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHGGGGTTTEECCCCCTTEECCCSSEEEEECGG------GSSCHHHHHHHHHHTTB
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHhhccCCccccCCCCCCCceeeEEEEEEECCc------CcCcHHHHHHHHHHCCC
Confidence 8888754 44556667777777777765411 0110000000121 122223210 00124578899999999
Q ss_pred eeeccCC--------C------------------CCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777 439 LVGKGGL--------H------------------GNVFRIKPPMCFTKDDADFLVDALDYSMS 475 (477)
Q Consensus 439 ~v~~~~~--------~------------------~~~iRi~p~~~~t~e~i~~~l~~l~~~l~ 475 (477)
.+.++.. + .+.+||.....+|++||+++++.|.++++
T Consensus 372 ~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~i~~~l~~~~~ 434 (437)
T 3bb8_A 372 GTRLLFAGNLTRQPYFHDVKYRVVGELTNTDRIMNQTFWIGIYPGLTHDHLDYVVSKFEEFFG 434 (437)
T ss_dssp CCBCCTTSSGGGSGGGSSCCCEECSCCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHTT
T ss_pred ceeccCCcccccCchhhccCccccCCCcHHHHHhcCEEEecCCCCCCHHHHHHHHHHHHHHHc
Confidence 9876421 0 12499988899999999999999998875
No 204
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.84 E-value=8.6e-20 Score=181.56 Aligned_cols=322 Identities=11% Similarity=0.036 Sum_probs=196.6
Q ss_pred CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccc-------ccccc--CChHHHHHHHHHHhhCCCCCC-E-EEEeCC
Q 011777 95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH-------ATTIY--LHHAIADFAEALASKMPGNLK-V-VYFVNS 163 (477)
Q Consensus 95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~-------~~~~~--~~~~~~~l~~~La~~~~~~~~-~-v~~~~s 163 (477)
++.|+|..+.. ..+|+|++++.+.+.+... ....+ ..+...+++++++++++.+.+ + +++|+|
T Consensus 3 ~~~~l~~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g 76 (362)
T 2c0r_A 3 ERAYNFNAGPA------ALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGG 76 (362)
T ss_dssp CCCEECCSSSC------CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSH
T ss_pred cceeeccCCCC------CCCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCC
Confidence 45677755432 3689999999987754210 01111 123467899999999876543 5 578899
Q ss_pred hHHHHHHHHHHHHhccCCceEEEEccCccCCcc-cccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHH
Q 011777 164 GTEANELAMLMARLSTGNLGMIALRNAYHGGSS-GTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQD 242 (477)
Q Consensus 164 GseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 242 (477)
|++|+..+++... .++++|++...++++... ......+ . +..++.+.........| .++++
T Consensus 77 ~t~a~~~~~~~l~--~~gd~vl~~~~~~~~~~~~~~~~~~g-~----------~~~v~~~~~~~~~~~~~----~~~~~- 138 (362)
T 2c0r_A 77 ASTQFAMIPMNFL--KEGQTANYVMTGSWASKALKEAKLIG-D----------THVAASSEASNYMTLPK----LQEIQ- 138 (362)
T ss_dssp HHHHHHHHHHHHC--CTTCEEEEEECSHHHHHHHHHHHHHS-C----------EEEEEECGGGTTCSCCC----GGGCC-
T ss_pred chHHHHHHHHhcC--CCCCeEEEEecCcHhHHHHHHHHHhC-C----------eEEEecccccccccCCC----HHHcc-
Confidence 9999999998653 355778877766655321 1111111 1 11222110000000001 12221
Q ss_pred HHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCccee--eec
Q 011777 243 HIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMA 320 (477)
Q Consensus 243 ~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~s 320 (477)
++ +++++|++.+.++++|.+..+ +++| ||+++|+||+|. +|. ....+. .. |++ +++
T Consensus 139 -i~----~~t~~v~~~~~~n~tG~~~~~---l~~i------~~~~vivD~a~~-~~~---~~~~~~--~~--d~~~~s~~ 196 (362)
T 2c0r_A 139 -LQ----DNAAYLHLTSNETIEGAQFKA---FPDT------GSVPLIGDMSSD-ILS---RPFDLN--QF--GLVYAGAQ 196 (362)
T ss_dssp -CC----TTEEEEEEESEETTTTEECSS---CCCC------TTSCEEEECTTT-TTS---SCCCGG--GC--SEEEEETT
T ss_pred -cC----CCcCEEEEeCCcCccceeccc---cccc------CCCEEEEEChhh-ccC---Cccchh--HC--cEEEEecc
Confidence 22 467877777777888875332 4443 899999999997 321 112222 22 555 578
Q ss_pred ccccC-ccceEEEEeCHHHHHhhccc------------ccccCCCCcHHHHHHHHHHHHhhch----hhHHHHHHHHHHH
Q 011777 321 KGIGN-GLPLGAVVTTPEIANVMAQK------------IQFNTFGGNPVCSAGGLAVLRVIDK----ERRQAHCADVGSH 383 (477)
Q Consensus 321 K~lg~-G~pig~v~~~~~~~~~~~~~------------~~~~t~~~~~~~~aaa~a~l~~l~~----~~~~~~~~~~~~~ 383 (477)
|.+|. | +|++++++++++.+... .....++.|+.+++++.++|+.+.+ +...++.+++.++
T Consensus 197 K~~g~~G--~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~ 274 (362)
T 2c0r_A 197 KNLGPSG--VTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASL 274 (362)
T ss_dssp TTTCCSS--CEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred ccccCcC--cEEEEEcHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99973 5 89999999987666431 0122346678888889999987654 3455666666666
Q ss_pred HHHHHHHHHHhCC-Ccee-e---eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCC
Q 011777 384 LLGRLRTLQERHD-IIGD-V---RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCF 458 (477)
Q Consensus 384 l~~~L~~l~~~~~-~~~~-v---~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~ 458 (477)
+.+.|+++ + .... . ...+.++++.+ +......++.+.|.++||.+.++..+.+.+||++...+
T Consensus 275 l~~~L~~~----~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~L~~~gi~~~~g~~~~~~iRis~~~~~ 342 (362)
T 2c0r_A 275 IYDAIDQS----GGFYRGCVDVDSRSDMNITFRL--------ASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAV 342 (362)
T ss_dssp HHHHHHTS----TTSSEESSCGGGBCSSEEEEEC--------SCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTS
T ss_pred HHHHHHHc----CCccccCCChHHcCCcEEEEEc--------CCcchHHHHHHHHHHCCCeeccCCCCCCEEEEECCCCC
Confidence 66666543 3 2111 0 11234455544 22234567888999999988776444567999988888
Q ss_pred cHHHHHHHHHHHHHHHhh
Q 011777 459 TKDDADFLVDALDYSMSK 476 (477)
Q Consensus 459 t~e~i~~~l~~l~~~l~~ 476 (477)
+++|++++++.|++++++
T Consensus 343 ~~e~i~~l~~~l~~~~~~ 360 (362)
T 2c0r_A 343 PYESCEALVQFMEHFKRS 360 (362)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999988764
No 205
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.84 E-value=1.3e-19 Score=183.17 Aligned_cols=321 Identities=11% Similarity=0.018 Sum_probs=183.4
Q ss_pred HHHHHHHHHHHhhc-cccccccC-ChHHHHHHHHHHhhC-----CCCCCEEEEeCChHHHHHHHHHHHHh-c-cCCceEE
Q 011777 115 PDVLNAIFEQSKLL-QHATTIYL-HHAIADFAEALASKM-----PGNLKVVYFVNSGTEANELAMLMARL-S-TGNLGMI 185 (477)
Q Consensus 115 p~v~~Av~~~l~~~-~~~~~~~~-~~~~~~l~~~La~~~-----~~~~~~v~~~~sGseA~~~Al~~ar~-~-~~~~~ii 185 (477)
|.|.+|.+..++.. .|. |. .....+|++.+++++ +.+.....-|.+||.|+..++.+... + .+++.|+
T Consensus 65 ~~Vk~A~~~~~~~~~~~~---Y~p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ 141 (420)
T 4h51_A 65 RVVRKAEQLLLDMNLDYE---YLPISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIY 141 (420)
T ss_dssp HHHHHHHHHHHHTTCCCC---CCCTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEE
T ss_pred HHHHHHHHHHhcCCCCCC---CCCcCChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEE
Confidence 77888876665542 221 21 222344444444432 11122345689999999988876543 2 3567899
Q ss_pred EEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCC
Q 011777 186 ALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGG 265 (477)
Q Consensus 186 ~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G 265 (477)
+.+++|..+.......+.... ...++.+.. .++.| .+.+.+.++... ++..+++..+.+|++|
T Consensus 142 ip~P~w~~y~~i~~~aG~~~V----------~~~~~~~~~--~~~~d----~~~~~~~l~~~~-~~~~vll~~~p~NPtG 204 (420)
T 4h51_A 142 LSDPTWPNHYGVVKAAGWKNI----------CTYAYYDPK--TVSLN----FEGMKKDILAAP-DGSVFILHQCAHNPTG 204 (420)
T ss_dssp EEESCCTHHHHHHHHTTCCCE----------EEEECEEGG--GTEEC----HHHHHHHHHHSC-SSCEEEEESSSCTTTC
T ss_pred EecCCchhHHHHHHHcCCeEE----------Eeecccccc--ccCCC----HHHHHHHHhccC-CCcEEEEeCCCCCCCC
Confidence 999999766544433332111 111110000 11111 345555554333 3455666666667777
Q ss_pred eeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCC--Ccccc-ccCCCc---ceeeecccccC-ccceEEEEeCHHH
Q 011777 266 AVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSH--YWGFE-TQGVIP---DIVTMAKGIGN-GLPLGAVVTTPEI 338 (477)
Q Consensus 266 ~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~--~~~~~-~~gv~p---Divt~sK~lg~-G~pig~v~~~~~~ 338 (477)
..++++.+++|.++|+++++++|+||+|.+|.+.+.. .+... ..+..+ -+-+|||.++. |+|+||+++..+.
T Consensus 205 -~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~ 283 (420)
T 4h51_A 205 -VDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKD 283 (420)
T ss_dssp -CCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSC
T ss_pred -CCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCceEEEEecccC
Confidence 5679999999999999999999999999999765411 11111 111112 23379999995 9999999886443
Q ss_pred HHhh-------cccccccCCCCcHHHHHHHHHHHHhhc--------hhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeec
Q 011777 339 ANVM-------AQKIQFNTFGGNPVCSAGGLAVLRVID--------KERRQAHCADVGSHLLGRLRTLQERHDIIGDVRG 403 (477)
Q Consensus 339 ~~~~-------~~~~~~~t~~~~~~~~aaa~a~l~~l~--------~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g 403 (477)
.+.. .........+.+..++.++...+..-. -+.+.++++++++.+.+.|+++......-...+.
T Consensus 284 ~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q 363 (420)
T 4h51_A 284 KTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPGSWEHVINQ 363 (420)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHC
T ss_pred HHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCC
Confidence 3322 111222334455666666665554210 0123344444455555555443111011111345
Q ss_pred cceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 404 RGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 404 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
.|+|.++-+. .+.++.|+++||++.+++ ||+.+ ..+++.|+++.++|.+++++
T Consensus 364 ~GmF~~~gls-------------~e~v~~L~e~~Vy~~~~g------Ris~A-gl~~~ni~~~a~aI~~vvr~ 416 (420)
T 4h51_A 364 IGMFSFLGLS-------------KAQCEYCQNHNIFITVSG------RANMA-GLTHETALMLAQTINDAVRN 416 (420)
T ss_dssp CSSEEECCCC-------------HHHHHHHHHTTEECCTTC------EEEGG-GCCHHHHHHHHHHHHHHHC-
T ss_pred CceEEecCcC-------------HHHHHHHHhCCEEEcCCC------EEEec-cCCHHHHHHHHHHHHHHHHH
Confidence 5777654331 133567889999988754 88754 36899999999999999875
No 206
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.84 E-value=6.9e-19 Score=183.64 Aligned_cols=315 Identities=18% Similarity=0.167 Sum_probs=189.5
Q ss_pred HHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc-------cC-----CceEEEEccCccCCcccccccccCCC
Q 011777 139 AIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS-------TG-----NLGMIALRNAYHGGSSGTIGLTALNT 206 (477)
Q Consensus 139 ~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~-------~~-----~~~ii~~~~~yhG~~~~~~~~~~~~~ 206 (477)
...++.++|+++++.+.+.++|++||||||..|++.+|.+ .| +..|++.+. .|.....+....+..
T Consensus 149 le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~-~h~s~~~~~~~~g~g- 226 (515)
T 2jis_A 149 MEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKE-CHYSIQKGAAFLGLG- 226 (515)
T ss_dssp HHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETT-SCTHHHHHHHHTTSC-
T ss_pred HHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCC-ccHHHHHHHHHcCCC-
Confidence 3567788899998766678999999999999999998742 13 114555444 444433332222210
Q ss_pred CCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc--CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHh
Q 011777 207 WKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG--TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKA 284 (477)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~ 284 (477)
...+..++... ....+ .++|+++|+.. ...++++|+++..++++|.+.+ +++|.++|++|
T Consensus 227 ------~~~v~~v~~~~--~~~~d------~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~----l~~I~~la~~~ 288 (515)
T 2jis_A 227 ------TDSVRVVKADE--RGKMV------PEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP----LEAIADVCQRH 288 (515)
T ss_dssp ------GGGEEEECBCT--TSCBC------HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHH
T ss_pred ------CCcEEEEecCC--CCcCC------HHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC----HHHHHHHHHHc
Confidence 00233333211 11122 57888888621 1225788888888888887776 99999999999
Q ss_pred CcEEEEcCcccCccCCCCCCccccccCC-Ccceeee--cccccCccceEEEEeCHH--HHHhh-c---ccc-c-------
Q 011777 285 GGVCIADEVQTGFGRTGSHYWGFETQGV-IPDIVTM--AKGIGNGLPLGAVVTTPE--IANVM-A---QKI-Q------- 347 (477)
Q Consensus 285 gillI~DEv~~gfgr~G~~~~~~~~~gv-~pDivt~--sK~lg~G~pig~v~~~~~--~~~~~-~---~~~-~------- 347 (477)
|+++|+|++|+++.... ..+.....++ .+|++++ +|.+++++++|+++++++ +++.. . ... .
T Consensus 289 g~~l~vD~a~~~~~~~~-~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~ 367 (515)
T 2jis_A 289 GLWLHVDAAWGGSVLLS-QTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDV 367 (515)
T ss_dssp TCEEEEEETTGGGGGGC-TTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCSCG
T ss_pred CCeEEEehhhhhHHHhC-hhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccc
Confidence 99999999999876544 2222234455 6788876 799987788999999876 65532 1 100 0
Q ss_pred ---ccCC------CCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCC-C
Q 011777 348 ---FNTF------GGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDR-K 417 (477)
Q Consensus 348 ---~~t~------~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~-~ 417 (477)
.+++ ....+.+.++++++..-.-++..++..++.+++.++|+++. .+.++.. .....+.+.+.... .
T Consensus 368 ~~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~-g~~~~~~--~~~~~v~f~~~p~~~~ 444 (515)
T 2jis_A 368 ALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKRE-GFELVME--PEFVNVCFWFVPPSLR 444 (515)
T ss_dssp GGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST-TEEESSC--CSSSEEEEEECCGGGT
T ss_pred cCCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCC-CEEEeCC--CCeeEEEEEEeCcccc
Confidence 0111 11244455555555321224456677777777777776531 1111111 22233444432210 0
Q ss_pred CC-CccH--HH----HHHHHHHHHHcCceeec-c--CCCCCEEEEeC-CCCCcHHHHHHHHHHHHHHHhhC
Q 011777 418 EK-TPAK--AE----TAVLFEKLRELGVLVGK-G--GLHGNVFRIKP-PMCFTKDDADFLVDALDYSMSKL 477 (477)
Q Consensus 418 ~~-~~~~--~~----~~~~~~~l~~~Gv~v~~-~--~~~~~~iRi~p-~~~~t~e~i~~~l~~l~~~l~~l 477 (477)
.. .+.. .. ...+.+.|.++|+++.. . ....+++||++ +..+|++||++++++|+++++++
T Consensus 445 ~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~~ 515 (515)
T 2jis_A 445 GKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQDL 515 (515)
T ss_dssp TCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTTC
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Confidence 00 0111 11 12467788889976532 1 11136899999 88899999999999999988764
No 207
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.83 E-value=1.8e-20 Score=188.75 Aligned_cols=275 Identities=13% Similarity=0.073 Sum_probs=168.3
Q ss_pred HHHHHHHHhhCC-----CCC-CEEEEeCChHHHHHHHHHHHHhccCCc----eEEEEccCccCCcccccccccCCCCCCC
Q 011777 141 ADFAEALASKMP-----GNL-KVVYFVNSGTEANELAMLMARLSTGNL----GMIALRNAYHGGSSGTIGLTALNTWKYP 210 (477)
Q Consensus 141 ~~l~~~La~~~~-----~~~-~~v~~~~sGseA~~~Al~~ar~~~~~~----~ii~~~~~yhG~~~~~~~~~~~~~~~~~ 210 (477)
.+|++.+++++. ... ++|++|+|+++|+..+++.... +++ .|++.+++|.++.......+..
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~--~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~------ 142 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSS--LARSQPVSVVAAAPFYSTYVEETTYVRSG------ 142 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHHH--TSSSSSEEEEECSSCCTHHHHHHHTTCBT------
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhcC--CCCCCcceEEEcCCCchhHHHHHHHcCCe------
Confidence 556666665543 123 5899999999999999987643 455 8999999998765443332211
Q ss_pred CCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHH-hC--cE
Q 011777 211 IPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRK-AG--GV 287 (477)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~-~g--il 287 (477)
+..++. +. ++++ ..++++|++...+|++|.+. + +| |++ |+ ++
T Consensus 143 -----~~~~~~--------d~------~~l~-------~~~~k~v~l~~p~NPtG~~~-~-----~l---~~~~~~~~~~ 187 (391)
T 3bwn_A 143 -----MYKWEG--------DA------WGFD-------KKGPYIELVTSPNNPDGTIR-E-----TV---VNRPDDDEAK 187 (391)
T ss_dssp -----TEEEEE--------ES------TTCC-------CCSCEEEEEESSCTTTCCCC-C-----CC---C-----CCCE
T ss_pred -----EEEecC--------CH------HHcC-------CCCCEEEEECCCCCCCchhH-H-----HH---HHHhhcCCCE
Confidence 111110 00 1111 12455665554566677555 2 23 334 66 99
Q ss_pred EEEcCcccCccCCCCCCccccccCCCcceeeeccccc-CccceEEEEe-CHHHHHhhcccccccCCCCcHHHHHHHHHHH
Q 011777 288 CIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIG-NGLPLGAVVT-TPEIANVMAQKIQFNTFGGNPVCSAGGLAVL 365 (477)
Q Consensus 288 lI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg-~G~pig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l 365 (477)
+|+||+|.. +. . ..+. ...+....+.+|||.+| .|+|+||+++ ++++++.+.......+++.+++++.++.++|
T Consensus 188 ii~De~y~~-~~-~-~~l~-~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l 263 (391)
T 3bwn_A 188 VIHDFAYYW-PH-Y-TPIT-RRQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKIL 263 (391)
T ss_dssp EEEECTTCS-TT-T-SCCC-CCBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred EEEeCCCCC-CC-C-Cccc-cCCCCeEEEEechhhcCCCccceEEEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHH
Confidence 999999973 21 1 1111 12233344558999998 6999999997 8899888876544446778999999999988
Q ss_pred Hhhch--------hhHHHHHHHHHHHHHHHHHHHHHhCCCcee--------------eeccceeEEEEEeeCCCCCCccH
Q 011777 366 RVIDK--------ERRQAHCADVGSHLLGRLRTLQERHDIIGD--------------VRGRGLMVGMELVTDRKEKTPAK 423 (477)
Q Consensus 366 ~~l~~--------~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~--------------v~g~g~~~~i~~~~~~~~~~~~~ 423 (477)
+...+ +++.+++++..+..++.+.+...+++.+.. .+..|+++|+.+...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~-------- 335 (391)
T 3bwn_A 264 NVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE-------- 335 (391)
T ss_dssp HHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESSS--------
T ss_pred hCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCcH--------
Confidence 75421 334444444444444444333333332211 123456778877321
Q ss_pred HHHHHHHHHHHHcCceeeccCCC---CCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777 424 AETAVLFEKLRELGVLVGKGGLH---GNVFRIKPPMCFTKDDADFLVDALDYSMS 475 (477)
Q Consensus 424 ~~~~~~~~~l~~~Gv~v~~~~~~---~~~iRi~p~~~~t~e~i~~~l~~l~~~l~ 475 (477)
..+.+.|.++||.+.++..+ .+++||++. .+++++++++++|.++++
T Consensus 336 ---~~~~~~l~~~gV~v~pg~~fg~~~~~iRis~~--~~~e~i~~~~~~L~~~~~ 385 (391)
T 3bwn_A 336 ---TDLVSELRRHKVMSRAGERCGSDKKHVRVSML--SREDVFNVFLERLANMKL 385 (391)
T ss_dssp ---CCHHHHHHHTTEECEEGGGGTCCTTEEEEESC--SCHHHHHHHHHHHHSCC-
T ss_pred ---HHHHHHHHHCCEEEccCCCCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHH
Confidence 23566778899999997544 468999765 489999999999987764
No 208
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.82 E-value=4.1e-18 Score=174.86 Aligned_cols=327 Identities=14% Similarity=-0.004 Sum_probs=191.4
Q ss_pred CCHHHHHHHHHHHhhcccccccc--CChHHHHHHHHHHhhCCCCCC-----EEEEeCChHHHHHHHHHHHHhc-------
Q 011777 113 CHPDVLNAIFEQSKLLQHATTIY--LHHAIADFAEALASKMPGNLK-----VVYFVNSGTEANELAMLMARLS------- 178 (477)
Q Consensus 113 ~~p~v~~Av~~~l~~~~~~~~~~--~~~~~~~l~~~La~~~~~~~~-----~v~~~~sGseA~~~Al~~ar~~------- 178 (477)
.+|.+.+++.+.++........+ ......+++++++++++.+.+ .+++++|||||+..++..++..
T Consensus 54 ~~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~ 133 (452)
T 2dgk_A 54 DDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEA 133 (452)
T ss_dssp CCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 56899999988775422111111 223456788888998876544 4899999999999999887641
Q ss_pred cC----CceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeE
Q 011777 179 TG----NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAG 254 (477)
Q Consensus 179 ~~----~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~ 254 (477)
.| ++.||+.+ .|.......... |+..+.+|... ..+..| .++|+++|+ +++++
T Consensus 134 ~G~~~~~~~vi~~~--~h~~~~~~~~~~------------G~~v~~v~~~~-~~~~~d----~~~l~~~i~----~~t~~ 190 (452)
T 2dgk_A 134 AGKPTDKPNLVCGP--VQICWHKFARYW------------DVELREIPMRP-GQLFMD----PKRMIEACD----ENTIG 190 (452)
T ss_dssp TTCCCSCCEEEESS--CCHHHHHHHHHT------------TCEEEECCCBT-TBCSCC----HHHHHHHCC----TTEEE
T ss_pred cCCCCCCcEEEECC--CcHHHHHHHHHc------------CceEEEEecCC-CCCeEC----HHHHHHHHh----hCCEE
Confidence 23 34666655 554333222221 22222222211 011112 578888876 35677
Q ss_pred EEecccCCCCCeeeCCchhHHHHHHHHHHh------CcEEEEcCcccCccC---CCCCCccccccCCCcceeeec--ccc
Q 011777 255 FIAETIQGVGGAVELAPGYLKLVYDIVRKA------GGVCIADEVQTGFGR---TGSHYWGFETQGVIPDIVTMA--KGI 323 (477)
Q Consensus 255 vi~epi~~~~G~~~~~~~~l~~l~~l~~~~------gillI~DEv~~gfgr---~G~~~~~~~~~gv~pDivt~s--K~l 323 (477)
|++...++++|.+.+ +++|.++|++| |+++|+|++|.++.. .+...+.+.. ...|+++++ |.+
T Consensus 191 v~~~~~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~hK~~ 264 (452)
T 2dgk_A 191 VVPTFGVTYTGNYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRL--PRVKSISASGHKFG 264 (452)
T ss_dssp EECBBSCTTTCBBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTS--TTEEEEEEETTTTT
T ss_pred EEEEcCCcCCcccCC----HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCC--CCCcEEEECccccc
Confidence 777766667887776 99999999996 999999999987632 1200111111 135766654 966
Q ss_pred cCccceEEEEeCHH-HH-Hhhccc-cc-c---------cCCCC-cHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 011777 324 GNGLPLGAVVTTPE-IA-NVMAQK-IQ-F---------NTFGG-NPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLR 389 (477)
Q Consensus 324 g~G~pig~v~~~~~-~~-~~~~~~-~~-~---------~t~~~-~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~ 389 (477)
.+|+++|+++++++ +. +.+... .+ + ++-.+ +.+++.+++..+..-.-++..++..++.+++.++|+
T Consensus 265 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~ 344 (452)
T 2dgk_A 265 LAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIA 344 (452)
T ss_dssp CCCSSCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999753 33 433211 01 0 01111 233334443333211113345555566666666655
Q ss_pred HHHHhCCCceee-e----ccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeecc----CC-CCCEEEEeCCCCCc
Q 011777 390 TLQERHDIIGDV-R----GRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKG----GL-HGNVFRIKPPMCFT 459 (477)
Q Consensus 390 ~l~~~~~~~~~v-~----g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----~~-~~~~iRi~p~~~~t 459 (477)
+ .+.+..+ + ....++.+.+...... .....++.+.|.++|+.+... .. ..+++||+....+|
T Consensus 345 ~----~~~~~~~~~~~~~~~~~~v~f~~~~~~~~----~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t 416 (452)
T 2dgk_A 345 K----LGPYEFICTGRPDEGIPAVCFKLKDGEDP----GYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFE 416 (452)
T ss_dssp T----TSSEEEEEECCTTTBSSEEEEEECTTCCC----SCCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTCC
T ss_pred h----CCCeEEecCCCCCCCeEEEEEEecCcccc----cCCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCCC
Confidence 4 3322222 2 2445666665321100 011357888999999965422 11 24589999988889
Q ss_pred HHHHHHHHHHHHHHHhh
Q 011777 460 KDDADFLVDALDYSMSK 476 (477)
Q Consensus 460 ~e~i~~~l~~l~~~l~~ 476 (477)
++|++++++.|++++++
T Consensus 417 ~e~id~li~~l~~~~~~ 433 (452)
T 2dgk_A 417 MDFAELLLEDYKASLKY 433 (452)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988753
No 209
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.82 E-value=7.9e-19 Score=180.39 Aligned_cols=301 Identities=10% Similarity=-0.035 Sum_probs=179.3
Q ss_pred HHHHHHHHHHhhCCCCCCEEEEeCChH-HHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCee
Q 011777 139 AIADFAEALASKMPGNLKVVYFVNSGT-EANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIH 217 (477)
Q Consensus 139 ~~~~l~~~La~~~~~~~~~v~~~~sGs-eA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~ 217 (477)
...+++++++++++.+.+ ++|++||| .++..++..++...+++.||+.+..|+. ........ |+.
T Consensus 134 ~~~~~~~~la~~~g~~~~-~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s-~~~~~~~~------------G~~ 199 (456)
T 2z67_A 134 LTNKILESFFKQLGLNVH-AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKS-PIKAVSFV------------GMN 199 (456)
T ss_dssp HHHHHHHHHHHHTTCCCE-EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHH-HHHHHHHT------------TCE
T ss_pred HHHHHHHHHHHHcCCCCC-EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHH-HHHHHHHc------------CCC
Confidence 456788999999977655 99999999 4666677766543355557777775544 22222221 222
Q ss_pred eecCCCCc-CCCCCCCHHHHHHHHHHHH-hccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc
Q 011777 218 HVVNPDPY-HGSFGSDAARYAQDLQDHI-DFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT 295 (477)
Q Consensus 218 ~~~~~~~~-~~~~~~~~~~~~~~le~~i-~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~ 295 (477)
.+.++... ...+..| +++|+++| +.....++.+|++...+++.|.+.+ +++|.++|++||+++|+||+|.
T Consensus 200 ~~~v~~~~~~~~~~~d----~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~----l~~I~~la~~~g~~v~vD~A~~ 271 (456)
T 2z67_A 200 MRLVETVLDGDRVYVP----VEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYA 271 (456)
T ss_dssp EEEECCEEETTEEECC----HHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTT
T ss_pred ceEEEEeccCCCCCcC----HHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCcEEEECcch
Confidence 21111100 0001112 57888888 3211135666655555566787776 9999999999999999999987
Q ss_pred CccCCCCCCcccc-ccCCCcceeee--cccccCccceEEEEe-CHHHHHhhcccccccCCCCc-HHHHHHHHHHHHhhch
Q 011777 296 GFGRTGSHYWGFE-TQGVIPDIVTM--AKGIGNGLPLGAVVT-TPEIANVMAQKIQFNTFGGN-PVCSAGGLAVLRVIDK 370 (477)
Q Consensus 296 gfgr~G~~~~~~~-~~gv~pDivt~--sK~lg~G~pig~v~~-~~~~~~~~~~~~~~~t~~~~-~~~~aaa~a~l~~l~~ 370 (477)
++.. |....... ..+ .+|++++ +|.+++++++|++++ ++++++.+.....+. .+++ .+++.+++..+....-
T Consensus 272 ~~~~-g~~~~~~~~~~~-~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l~~~~~g~-~~~~~~~~~~aal~~l~~~~~ 348 (456)
T 2z67_A 272 IQNN-YYLEKLKKAFKY-RVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGR-ASATPVVNTLVSLLSMGSKNY 348 (456)
T ss_dssp TTCH-HHHHHHHHHHTS-CCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTSCSC-BCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HhhHHHHHhhCC-CCCEEEEcCCCCcCCCCCeEEEEEcCHHHHhhcCcCCCCC-CCCCHHHHHHHHHHHHHHHHH
Confidence 5532 10001111 122 5777765 698777889999999 577877765433222 2233 3333333333321112
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCc---eee------
Q 011777 371 ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGV---LVG------ 441 (477)
Q Consensus 371 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv---~v~------ 441 (477)
++..++..++.+++.++|+++..+.+.. ..... .++++.+..+. . ..++.+.|.++|+ -+.
T Consensus 349 ~~~~~~~~~~~~~l~~~L~~~~~~~g~~-v~~~~-~~v~~~~~~~~----~----~~~l~~~L~~~gi~~~rv~~~~g~f 418 (456)
T 2z67_A 349 LELVKNQKNSKKLLDELLNDLSKKTGGK-FLDVE-SPIASCISVNS----D----PVEIAAKLYNLRVTGPRGIKKTDHF 418 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCC-BCCCC-CSSEEEEECSS----C----HHHHHHHHHHTTEESCEEECTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCE-ecCCC-CeEEEEEeccc----H----HHHHHHHHHHcCCCcceEEeecCcc
Confidence 4567788888889999888774322311 11122 44555552111 0 3467888888886 222
Q ss_pred cc----CCCCCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777 442 KG----GLHGNVFRIKPPMCFTKDDADFLVDALDYSM 474 (477)
Q Consensus 442 ~~----~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l 474 (477)
.+ ....+++|++++..+|++|||+++++|++++
T Consensus 419 ~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 419 GNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp HHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred ccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 00 1124689999998999999999999998764
No 210
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.82 E-value=4.4e-20 Score=189.09 Aligned_cols=287 Identities=10% Similarity=-0.038 Sum_probs=179.9
Q ss_pred CChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCC
Q 011777 136 LHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGE 215 (477)
Q Consensus 136 ~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~ 215 (477)
......++.+++++ ++.+ +.++++|||++|+..+++.+. .+++.|++.+++|++........+...
T Consensus 55 ~~~~~~~~~~~la~-~g~~-~~v~~~~G~t~a~~~~~~a~~--~~gd~Vlv~~~~h~s~~~~~~~~G~~~---------- 120 (446)
T 2x3l_A 55 PEEVILKSMKQVEK-HSDY-DGYFLVNGTTSGILSVIQSFS--QKKGDILMARNVHKSVLHALDISQQEG---------- 120 (446)
T ss_dssp CSSHHHHHHHHHCS-CTTE-EEEEESSHHHHHHHHHHHTTT--TSSSCEEECTTCCHHHHHHHHHHTCCE----------
T ss_pred cchHHHHHHHHHHh-cCCC-ceEEEeCCHHHHHHHHHHHhc--CCCCEEEEecCccHHHHHHHHHcCCeE----------
Confidence 34566788888888 8664 679999999999999998763 367889999999887765544332211
Q ss_pred eeeecC--CCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCc
Q 011777 216 IHHVVN--PDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEV 293 (477)
Q Consensus 216 ~~~~~~--~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv 293 (477)
..++. ...+...+..| .+++ +. .++++|++++ .+.+|.+.+ +++|.++|++||+++|+||+
T Consensus 121 -~~v~~~~~~~~~~~~~~d----~~~l---~~----~~~~~v~~~~-~n~~G~~~~----l~~I~~l~~~~~~~livDea 183 (446)
T 2x3l_A 121 -HFIETHQSPLTNHYNKVN----LSRL---NN----DGHKLVVLTY-PNYYGETFN----VEEVIKSLHQLNIPVLIDEA 183 (446)
T ss_dssp -EECEEEECTTTSSEEEEE----C--------------CCEEEEES-SCTTSCCCC----HHHHHHHHHHTTCCEEEECT
T ss_pred -EEEeCeeccccCcCCCCC----HHHH---cC----CCceEEEEEC-CCCCeEecC----HHHHHHHHHhcCCeEEEcch
Confidence 11111 00000000001 1333 22 3567777777 444787766 89999999999999999999
Q ss_pred ccC-ccCCCCCCccccccCCCcceeeec--ccccCccceEEEEeCHHHHH--hhccc-ccccCCCCcHHHHHHHHHHHHh
Q 011777 294 QTG-FGRTGSHYWGFETQGVIPDIVTMA--KGIGNGLPLGAVVTTPEIAN--VMAQK-IQFNTFGGNPVCSAGGLAVLRV 367 (477)
Q Consensus 294 ~~g-fgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~~~~~~~~--~~~~~-~~~~t~~~~~~~~aaa~a~l~~ 367 (477)
|++ +.+.+ ..+..... .+|+++.| |.++++.++|++++++++++ .+... ....+.+.+...+++..++++.
T Consensus 184 ~~~~~~f~~-~~~~~~~~--g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~~~~~~~~~~~~~~~s~~~~~~aal~~a~~~ 260 (446)
T 2x3l_A 184 HGAHFGLQG-FPDSTLNY--QADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMASLESAAQF 260 (446)
T ss_dssp TCTTTTSTT-SCCCGGGG--TCSEEEECHHHHSSSCTTCEEEEEETTCTTHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred hhhhhccCC-CCCChHHc--CCCEEEECCccccccccccEEEEEcCCcCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 986 33334 22222222 36777655 99887778999999887644 22211 1223445566666666666766
Q ss_pred hchh---hHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC
Q 011777 368 IDKE---RRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG 444 (477)
Q Consensus 368 l~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~ 444 (477)
++.. ++.++.+++.++++++ ...... ...+..+++.+. .....++.+.|.++||.+...+
T Consensus 261 l~~~g~~~~~~~~~~l~~~l~~~------g~~~~~--~~~~~~l~i~~~---------~~~~~~l~~~L~~~GI~v~~~g 323 (446)
T 2x3l_A 261 YKTYDSTLFFAKRAQLIECLENK------GFEMLQ--VDDPLKLLIKYE---------GFTGHDIQNWFMNAHIYLELAD 323 (446)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHH------TCEEEE--CSSTTEEEEECT---------TSCHHHHHHHHHHTTEEESEEC
T ss_pred HHHhCHHHHHHHHHHHHHHHHHc------CCEECc--CCCCeEEEEEeC---------CcCHHHHHHHHHHCCCEEEecC
Confidence 6542 2666666666666554 111111 112344555542 0114568888999999997332
Q ss_pred CCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 445 LHGNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 445 ~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
.+++|++++..+|++++ +++++|++++++
T Consensus 324 --~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~ 352 (446)
T 2x3l_A 324 --DYQALAILPLWHHDDTY-LFDSLLRKIEDM 352 (446)
T ss_dssp --SSCEEEECCCCCTTCCC-CHHHHHHHHHTC
T ss_pred --CCEEEEEeecCCCHHHH-HHHHHHHHHHHh
Confidence 36899999998999999 999999988754
No 211
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.82 E-value=5.8e-19 Score=178.79 Aligned_cols=298 Identities=11% Similarity=0.022 Sum_probs=185.8
Q ss_pred cccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCC
Q 011777 129 QHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWK 208 (477)
Q Consensus 129 ~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~ 208 (477)
.+...++.++...+++++|+++.+. +.+++++||++|+.++++... .++++||+..+.|++..........
T Consensus 73 ~~~y~r~~~p~~~~le~~lA~l~g~--~~~i~~ssGt~Ai~~al~~l~--~~Gd~Vi~~~~~y~~~~~~~~~~l~----- 143 (415)
T 2fq6_A 73 ELFYGRRGTLTHFSLQQAMCELEGG--AGCVLFPCGAAAVANSILAFI--EQGDHVLMTNTAYEPSQDFCSKILS----- 143 (415)
T ss_dssp SCCCTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHTTC--CTTCEEEEETTSCHHHHHHHHHTGG-----
T ss_pred CccccCCCCchHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHHh--CCCCEEEEeCCCchHHHHHHHHHHH-----
Confidence 3555667788999999999999865 467788999999999988432 3567899999999875432211000
Q ss_pred CCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHH--hCc
Q 011777 209 YPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRK--AGG 286 (477)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~--~gi 286 (477)
..|+....++. + | +++++++|+ +++++|++|.++|++|.+.+ +++|.++|++ ||+
T Consensus 144 ----~~G~~v~~v~~------~-d----~~~le~ai~----~~tklV~~e~~~NptG~v~d----l~~I~~la~~~~~g~ 200 (415)
T 2fq6_A 144 ----KLGVTTSWFDP------L-I----GADIVKHLQ----PNTKIVFLESPGSITMEVHD----VPAIVAAVRSVVPDA 200 (415)
T ss_dssp ----GGTCEEEEECT------T-C----GGGGGGGCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHCTTC
T ss_pred ----HcCcEEEEECC------C-C----HHHHHHhhc----cCCcEEEEECCCCCCCEeec----HHHHHHHHHhhcCCC
Confidence 01222222111 0 1 366777765 46899999999999998876 9999999999 999
Q ss_pred EEEEcCcccCccCCCCCCccccccCCCccee--eecccccC-c-cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHH
Q 011777 287 VCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-G-LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGL 362 (477)
Q Consensus 287 llI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G-~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~ 362 (477)
++|+|++|... ... ... ....|++ +++|.+++ | ...|++++++++++.+...........++..+.+++
T Consensus 201 ~livD~a~a~~-~~~-~p~-----~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~~G~~~~~~~a~~~~ 273 (415)
T 2fq6_A 201 IIMIDNTWAAG-VLF-KAL-----DFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITS 273 (415)
T ss_dssp EEEEECTTTTT-TSS-CGG-----GGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred EEEEECCCccc-ccC-Ccc-----ccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 99999999732 112 111 2235766 57899996 4 456999999887776654322111233566666665
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHH--Hh--CCCce----------eeeccceeEEEEEeeCCCCCCccHHHHHH
Q 011777 363 AVLRVIDKERRQAHCADVGSHLLGRLRTLQ--ER--HDIIG----------DVRGRGLMVGMELVTDRKEKTPAKAETAV 428 (477)
Q Consensus 363 a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~--~~--~~~~~----------~v~g~g~~~~i~~~~~~~~~~~~~~~~~~ 428 (477)
..++.+. ...++..++...+.+.|++.. .+ ++... ..++.|.++++.+... ........
T Consensus 274 ~~l~~l~--~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~-----~~~~~~~~ 346 (415)
T 2fq6_A 274 RGLRTLG--VRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKK-----LNNEELAN 346 (415)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSC-----CCHHHHHH
T ss_pred hhhhHHH--HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCC-----CCHHHHHH
Confidence 6665432 233444555556666555431 00 12110 0124677888887321 00123444
Q ss_pred HHHHHHHcCceee------------c-----------cCCCCCEEEEeCCCCCcHHHHHHHHHHHHH
Q 011777 429 LFEKLRELGVLVG------------K-----------GGLHGNVFRIKPPMCFTKDDADFLVDALDY 472 (477)
Q Consensus 429 ~~~~l~~~Gv~v~------------~-----------~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~ 472 (477)
+.+.+.-.++.+. | .+..++.|||++.+..++++|+.+.++|++
T Consensus 347 ~l~~l~~~~~a~s~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 347 YLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp HHTTCSSCEECSCCCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred HHHhCCcCeEeccCCCCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 5544432232222 1 112247899999999999999998888875
No 212
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.82 E-value=7.1e-19 Score=177.43 Aligned_cols=310 Identities=12% Similarity=0.046 Sum_probs=187.8
Q ss_pred CCHHHHHHHHHHHhhccccccccC--ChHHHHHHHHHHhhCCCC-CCEEEE-eCChHHHHHHHHHHHHhccCCceEEEEc
Q 011777 113 CHPDVLNAIFEQSKLLQHATTIYL--HHAIADFAEALASKMPGN-LKVVYF-VNSGTEANELAMLMARLSTGNLGMIALR 188 (477)
Q Consensus 113 ~~p~v~~Av~~~l~~~~~~~~~~~--~~~~~~l~~~La~~~~~~-~~~v~~-~~sGseA~~~Al~~ar~~~~~~~ii~~~ 188 (477)
.+|+|++++.+...........+. .+...+++++++++++.+ .++|+| ++||++|++.+++.+. +++ ++.+.
T Consensus 51 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~---~~g-v~~v~ 126 (398)
T 2fyf_A 51 VRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLI---DKR-SLHLT 126 (398)
T ss_dssp CCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTC---SSC-EEEEE
T ss_pred CCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhc---CCC-eEEEe
Confidence 578999998763111111001121 234678999999999765 358888 9999999999998653 222 33336
Q ss_pred cCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeee
Q 011777 189 NAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVE 268 (477)
Q Consensus 189 ~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~ 268 (477)
.++|+.......... .+. ..+..++.++ .+..+ . .+. .++++|++...++++|.+.
T Consensus 127 ~~~~~~~~~~~~~~~--~~g-----~~~~~v~~~~----g~~~~-----~----~i~----~~~~~v~~~~~~nptG~~~ 182 (398)
T 2fyf_A 127 YGEFSAKFASAVSKN--PFV-----GEPIIITSDP----GSAPE-----P----QTD----PSVDVIAWAHNETSTGVAV 182 (398)
T ss_dssp CSHHHHHHHHHHHHC--TTS-----CCCEEEECCT----TCCCC-----C----CCC----TTCSEEEEESEETTTTEEC
T ss_pred CCHHHHHHHHHHHHh--CCC-----CceEEEecCC----CCCCC-----c----ccc----CCCCEEEEeCcCCCcceec
Confidence 667753221111100 000 0122232221 11111 0 022 3567777777788888766
Q ss_pred CCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceee--ecccccCccceEEEEeCHHHHHhhccc-
Q 011777 269 LAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGNGLPLGAVVTTPEIANVMAQK- 345 (477)
Q Consensus 269 ~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~pig~v~~~~~~~~~~~~~- 345 (477)
+ +++|.++ +|+++|+||+|+.+... ...+ .+|+++ ++|.++++.++|++++++++++.+...
T Consensus 183 ~----~~~i~~~---~~~~vivD~a~~~~~~~----~~~~----~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~ 247 (398)
T 2fyf_A 183 A----VRRPEGS---DDALVVIDATSGAGGLP----VDIA----ETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIA 247 (398)
T ss_dssp C----CCCCTTC---C-CEEEEECTTTTTTSC----CCGG----GCSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHH
T ss_pred c----hHHhhhh---cCCeEEEEeccccCCcc----cCcc----cCcEEEEecCcccCCCCceEEEEECHHHHHHhhccc
Confidence 5 3333333 89999999999854321 1111 257765 559998654699999999988766310
Q ss_pred ---------c----------cccC-CCCcHHHHHHHHHHHHhhchh----hHHHHHHHHHHHHHHHHHHHHHhCCCceee
Q 011777 346 ---------I----------QFNT-FGGNPVCSAGGLAVLRVIDKE----RRQAHCADVGSHLLGRLRTLQERHDIIGDV 401 (477)
Q Consensus 346 ---------~----------~~~t-~~~~~~~~aaa~a~l~~l~~~----~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v 401 (477)
. ...+ ++.|..+++++.++++.+.++ +..++.+++.+++.+.|+++ +.+...
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~ 323 (398)
T 2fyf_A 248 ATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQER----PYTTPF 323 (398)
T ss_dssp HTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHS----TTEEES
T ss_pred ccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHc----CCceec
Confidence 0 0122 345677777788888765543 34566666677777766654 222111
Q ss_pred ---e-ccc-eeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC--CCCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777 402 ---R-GRG-LMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL--HGNVFRIKPPMCFTKDDADFLVDALDYSM 474 (477)
Q Consensus 402 ---~-g~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p~~~~t~e~i~~~l~~l~~~l 474 (477)
+ +.+ .++++.+.. .....++.+.|.++||.+.++.. .++++||++...++++|+++++++|++++
T Consensus 324 ~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l 395 (398)
T 2fyf_A 324 VTDPGLRSQVVGTIDFVD--------DVDAGTVAKILRANGIVDTEPYRKLGRNQLRVAMFPAVEPDDVSALTECVDWVV 395 (398)
T ss_dssp CCSGGGBCSSEEEEEECT--------TSCHHHHHHHHHHTTCBCCSCCTTTCSSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred cCChhhcCCcEEEEECCC--------CCCHHHHHHHHHHCCcEEecCcccCCCCEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 1 123 377777621 11245788899999999987521 24789999988889999999999999998
Q ss_pred hhC
Q 011777 475 SKL 477 (477)
Q Consensus 475 ~~l 477 (477)
+++
T Consensus 396 ~~~ 398 (398)
T 2fyf_A 396 ERL 398 (398)
T ss_dssp HTC
T ss_pred HhC
Confidence 764
No 213
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.80 E-value=2e-18 Score=178.59 Aligned_cols=335 Identities=15% Similarity=0.071 Sum_probs=195.5
Q ss_pred EEeecCCcccccCCCCCHHHHHHHHHHHhhcc---ccccc-cC-----ChHHHHHHHHHHhhCCCCCCE---EEEeCChH
Q 011777 98 YLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ---HATTI-YL-----HHAIADFAEALASKMPGNLKV---VYFVNSGT 165 (477)
Q Consensus 98 ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~---~~~~~-~~-----~~~~~~l~~~La~~~~~~~~~---v~~~~sGs 165 (477)
.|++.++.. ..+|+|.+|+.+.+.... +.... |. ......++++++++++.+.+. -++.+||+
T Consensus 46 ~i~L~a~e~-----~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs 120 (483)
T 1rv3_A 46 GLELIASEN-----FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS 120 (483)
T ss_dssp SEECCTTCC-----CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH
T ss_pred CeEEEcCCC-----CCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcH
Confidence 455554432 368999999988776421 11111 11 223445668899998765432 24556677
Q ss_pred HHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCC--eeeecCCCC-cCCCCCCCHHHHHHHHHH
Q 011777 166 EANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGE--IHHVVNPDP-YHGSFGSDAARYAQDLQD 242 (477)
Q Consensus 166 eA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~le~ 242 (477)
+||.++++... .++++|++.+..|++......... +......| +..++++.. ..... | .++|++
T Consensus 121 ~an~~~~~all--~pGD~Vl~~~~~~~~~~~~~~~~~-----~~~v~~~G~~~~~v~~~~~~~~~~i--D----~d~le~ 187 (483)
T 1rv3_A 121 PANFAVYTALV--EPHGRIMGLDLPDGGHLTHGFMTD-----KKKISATSIFFESMAYKVNPDTGYI--D----YDRLEE 187 (483)
T ss_dssp HHHHHHHHHHT--CTTCEEEEECGGGTCCGGGCCBCS-----SCBCSHHHHHSEEEEECBCTTTCSB--C----HHHHHH
T ss_pred HHHHHHHHHhc--CCCCEEEEecCccCcCcchhhhhc-----ccCcccccceEEEEECccccCCCcC--C----HHHHHH
Confidence 99988887553 467889999888766533211110 00000011 233332211 11112 2 578888
Q ss_pred HHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc-CccCCCCCCccccccCCCcceee--e
Q 011777 243 HIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT-GFGRTGSHYWGFETQGVIPDIVT--M 319 (477)
Q Consensus 243 ~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-gfgr~G~~~~~~~~~gv~pDivt--~ 319 (477)
+++. .++++|++ ...+.+ .+.+ +++|+++|++||++||+|++|. |+...|...+.+. ..|+++ +
T Consensus 188 ~i~~---~~tklIi~-~~sn~~-~~~d----l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~----~~div~~s~ 254 (483)
T 1rv3_A 188 NARL---FHPKLIIA-GTSCYS-RNLD----YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE----HCHVVTTTT 254 (483)
T ss_dssp HHHH---HCCSEEEE-CCSSCC-SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG----TCSEEEEES
T ss_pred HHhh---cCCcEEEE-eCCcCC-CcCC----HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC----CCcEEEecC
Confidence 8862 25677887 444444 3444 8999999999999999999986 3322231111111 246665 5
Q ss_pred cccccCccceEEEEeCHH---------------HHHhhcccccccCC-CCcHHHHHHHHHHHHhhch---hhHHHHHHHH
Q 011777 320 AKGIGNGLPLGAVVTTPE---------------IANVMAQKIQFNTF-GGNPVCSAGGLAVLRVIDK---ERRQAHCADV 380 (477)
Q Consensus 320 sK~lg~G~pig~v~~~~~---------------~~~~~~~~~~~~t~-~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~ 380 (477)
+|+|+ |++.|+++++++ +.+.+......+.. +.+...+++..++++.+.+ ++..+++.++
T Consensus 255 ~K~l~-GprgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~ 333 (483)
T 1rv3_A 255 HKTLR-GCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVAN 333 (483)
T ss_dssp SGGGC-CCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred cccCC-CCCceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 69995 567799999874 33333221111112 2334455555567766543 4566777777
Q ss_pred HHHHHHHHHHHHHhCCCceeeecc-ceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceee----ccC---CCCCEEEE
Q 011777 381 GSHLLGRLRTLQERHDIIGDVRGR-GLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVG----KGG---LHGNVFRI 452 (477)
Q Consensus 381 ~~~l~~~L~~l~~~~~~~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~----~~~---~~~~~iRi 452 (477)
.+++.+.|.++ .+.++. .+. ..+.++++.... .....+.+.|.+.||.+. |+. ...+.+||
T Consensus 334 ~~~l~~~L~~~--g~~~~~--~~~~~~~~~v~~~~~g-------~~~~~~~~~L~~~gI~v~~~~~pg~~~~~~~~~iRi 402 (483)
T 1rv3_A 334 CRALSAALVEL--GYKIVT--GGSDNHLILVDLRSKG-------TDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRL 402 (483)
T ss_dssp HHHHHHHHHHT--TCEEGG--GSCSSSEEEEEGGGGT-------CCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEE
T ss_pred HHHHHHHHHhc--CCEecc--CCCCCceEEEeccCCC-------CCHHHHHHHHHhCCcEEecCCCCCCCcCCCCceEEe
Confidence 88888777664 222111 121 235556553210 113456778888999998 653 12468999
Q ss_pred eCCCCCc----HHHHHHHHHHHHHHHh
Q 011777 453 KPPMCFT----KDDADFLVDALDYSMS 475 (477)
Q Consensus 453 ~p~~~~t----~e~i~~~l~~l~~~l~ 475 (477)
+++..+| ++|+++++++|+++++
T Consensus 403 s~~~~~t~g~~~edi~~~~~~l~~~l~ 429 (483)
T 1rv3_A 403 GTPALTSRGLLEKDFQKVAHFIHRGIE 429 (483)
T ss_dssp ECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ecCCcccCCCCHHHHHHHHHHHHHHHH
Confidence 9887667 9999999999998875
No 214
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.79 E-value=4.7e-18 Score=172.74 Aligned_cols=290 Identities=15% Similarity=0.075 Sum_probs=176.6
Q ss_pred ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777 130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY 209 (477)
Q Consensus 130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~ 209 (477)
+...++.++...+|+++|+++.+. +..++++||++|+..+++.. ..+++.||+.++.|++...........
T Consensus 74 ~~y~r~~~p~~~~le~~lA~l~g~--~~~v~~~sG~~Ai~~al~al--~~~Gd~Vi~~~~~y~~~~~~~~~~~~~----- 144 (430)
T 3ri6_A 74 HVYSRSSNPTVEDLEQRLKNLTGA--LGVLALGSGMAAISTAILTL--ARAGDSVVTTDRLFGHTLSLFQKTLPS----- 144 (430)
T ss_dssp ------CCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHTHHHH-----
T ss_pred ccccCCCCHHHHHHHHHHHHHHCC--CcEEEECCHHHHHHHHHHHH--hCCCCEEEEcCCCchhHHHHHHHHHHH-----
Confidence 344567789999999999999865 56788899999999999866 346788999999998764422111000
Q ss_pred CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777 210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI 289 (477)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI 289 (477)
.|+....++.. | +++++++++ +++++|++|+++|++|.+.+ +++|.++|++||+++|
T Consensus 145 ----~G~~~~~v~~~-------d----~~~l~~ai~----~~t~~v~~e~p~NptG~~~d----l~~i~~la~~~g~~li 201 (430)
T 3ri6_A 145 ----FGIEVRFVDVM-------D----SLAVEHACD----ETTKLLFLETISNPQLQVAD----LEALSKVVHAKGIPLV 201 (430)
T ss_dssp ----TTCEEEEECTT-------C----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEE
T ss_pred ----cCCEEEEeCCC-------C----HHHHHHhhC----CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEE
Confidence 12222222211 1 578888775 47899999999999997776 9999999999999999
Q ss_pred EcCcccCccCCCCCCccccccCCCcceeeecccccC-ccceEEEEe---CHHH------------------HHhhccc-c
Q 011777 290 ADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGN-GLPLGAVVT---TPEI------------------ANVMAQK-I 346 (477)
Q Consensus 290 ~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~-G~pig~v~~---~~~~------------------~~~~~~~-~ 346 (477)
+||+|+ +| .++....+|....+.+++|.+++ |..+|.+++ +..+ ++.+... .
T Consensus 202 vD~a~~----~~-~~~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~ 276 (430)
T 3ri6_A 202 VDTTMT----PP-YLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVF 276 (430)
T ss_dssp EECTTS----CT-TTCCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHH
T ss_pred EECCCc----cc-ccCChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHH
Confidence 999987 22 22222344554555578899987 555544443 2111 1111111 0
Q ss_pred cccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeee-----------------ccce-eE
Q 011777 347 QFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVR-----------------GRGL-MV 408 (477)
Q Consensus 347 ~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~-----------------g~g~-~~ 408 (477)
.......+++.+..++..++.+. ...++..++..++.+.|+ ++|.+..+. |.|. ++
T Consensus 277 ~~~g~~~~~~~a~l~l~~l~~l~--~r~~~~~~na~~la~~L~----~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~l 350 (430)
T 3ri6_A 277 QNLGPSLSPHNAYLQSLGLETMA--LRIERSCQNAQELAHWLL----SIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSIL 350 (430)
T ss_dssp HHHCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHT----TCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEE
T ss_pred HhcCCCCCHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHh----CCCCccEEECCCCCCCccHHHHHHhCCCCceEE
Confidence 11112235666666666665442 223444555555555553 345444333 3466 89
Q ss_pred EEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC-------------------------CCCCEEEEeCCCCCcHHHH
Q 011777 409 GMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG-------------------------LHGNVFRIKPPMCFTKDDA 463 (477)
Q Consensus 409 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------------------------~~~~~iRi~p~~~~t~e~i 463 (477)
++++. ......++.+.++-.++.+..|+ ...+.||++..+ |++
T Consensus 351 sf~l~--------~~~~~~~~~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~----E~~ 418 (430)
T 3ri6_A 351 TFELE--------SKEASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGI----EEI 418 (430)
T ss_dssp EEECS--------SHHHHHHHHHHCSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCS----SCH
T ss_pred EEEEC--------CHHHHHHHHHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc----CCH
Confidence 99883 22345566766655554443332 245789997664 556
Q ss_pred HHHHHHHHHHH
Q 011777 464 DFLVDALDYSM 474 (477)
Q Consensus 464 ~~~l~~l~~~l 474 (477)
+.+++.|++++
T Consensus 419 ~dl~~dl~~al 429 (430)
T 3ri6_A 419 EDLKEDILQAL 429 (430)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 66677777665
No 215
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.79 E-value=3.6e-19 Score=181.32 Aligned_cols=322 Identities=12% Similarity=-0.030 Sum_probs=189.2
Q ss_pred CCEEEeecCCcccccCCCCCHHHHHHHHHHHhh-ccccccccCCh--H---HHHHHHHHHhhCC------CCCCEEEEeC
Q 011777 95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKL-LQHATTIYLHH--A---IADFAEALASKMP------GNLKVVYFVN 162 (477)
Q Consensus 95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~-~~~~~~~~~~~--~---~~~l~~~La~~~~------~~~~~v~~~~ 162 (477)
.+..+||..|... ++ .++.+.+++.+.+.. ..+. ..|... . ..+|++.+++++. .+.++|++|+
T Consensus 55 ~~~~i~l~~g~~~--~~-~~~~v~~a~~~~l~~~~~~~-~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~ 130 (427)
T 2hox_A 55 QGCSADVASGDGL--FL-EEYWKQHKEASAVLVSPWHR-MSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGV 130 (427)
T ss_dssp TTCCEECCSCCCG--GG-HHHHTTSHHHHCEEECTTTT-CSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEES
T ss_pred CCceEEecCcCCC--CC-CCHHHHHhHHhhhhcCCccc-ccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeC
Confidence 4466787766542 32 345677777765521 1111 012211 1 3455555555432 3457999999
Q ss_pred ChHHHHHHHHHHHHh------ccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHH
Q 011777 163 SGTEANELAMLMARL------STGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARY 236 (477)
Q Consensus 163 sGseA~~~Al~~ar~------~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (477)
|+++|+..+++.... ..+++.|++.+++|.++.......+.... .+.. |
T Consensus 131 G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~--------~~~~-------------d---- 185 (427)
T 2hox_A 131 GVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGY--------VWAG-------------N---- 185 (427)
T ss_dssp HHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTE--------EEEE-------------E----
T ss_pred CHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCCeee--------eecC-------------C----
Confidence 999999999986610 23567899999999876554433322100 0110 1
Q ss_pred HHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcce
Q 011777 237 AQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDI 316 (477)
Q Consensus 237 ~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDi 316 (477)
.++|++.++ .++++|++...+|++|.+.+ +.+ + ++..|.||.+-+ ..- .+..+. .+...-+
T Consensus 186 ~~~l~~~~~----~~~k~v~l~~p~NPtG~~~~--~~l-------~--~~~~i~d~~~~~--~~~-s~~~~~-~~~~i~~ 246 (427)
T 2hox_A 186 AANYVNVSN----PEQYIEMVTSPNNPEGLLRH--AVI-------K--GCKSIYDMVYYW--PHY-TPIKYK-ADEDILL 246 (427)
T ss_dssp GGGGTTCSC----GGGEEEEEESSCTTTCCCCC--CSS-------T--TCEEEEECTTCS--TTT-SCCCSC-BCCSEEE
T ss_pred HHHHHHhhc----CCceEEEEcCCCCCcccccH--HHH-------c--CCCEEEeecccC--CCC-CccccC-CCceEEE
Confidence 245555443 24555555555666775554 322 2 566788887642 101 111122 2333334
Q ss_pred eeeccccc-CccceEEEEe-CHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhc---------hhhHHHHHHHHHHHHH
Q 011777 317 VTMAKGIG-NGLPLGAVVT-TPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID---------KERRQAHCADVGSHLL 385 (477)
Q Consensus 317 vt~sK~lg-~G~pig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~---------~~~~~~~~~~~~~~l~ 385 (477)
.+|||.++ .|+|+||+++ ++++++.+.......+++.+.+++.++.++|+... .+++.++.++..+..+
T Consensus 247 ~S~SK~~g~~G~RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 326 (427)
T 2hox_A 247 FTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERW 326 (427)
T ss_dssp EEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHH
T ss_pred EeChhcCCCCCceEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHH
Confidence 47899998 6999999999 58998888765555667788999998888887532 1233333333333333
Q ss_pred HHHHHHHHhCCCce---------------eeeccceeEEEEEeeCCCCCCccHHHHHHHHHHH-HHcCceeeccCCC---
Q 011777 386 GRLRTLQERHDIIG---------------DVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKL-RELGVLVGKGGLH--- 446 (477)
Q Consensus 386 ~~L~~l~~~~~~~~---------------~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~--- 446 (477)
+.|.+...+++.+. ..+..|+++|+++..+ ..++.+.| .++||.+.++..+
T Consensus 327 ~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~----------~~~~~~~ll~~~gI~v~pg~~f~~~ 396 (427)
T 2hox_A 327 VNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE----------EDKDCYQTFQNGRINTQNGVGFEAS 396 (427)
T ss_dssp HHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG----------GGCSHHHHHHHTTEECEEGGGGTSC
T ss_pred HHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECCCc----------HHHHHHHHHHHCCEEEcCCCccCCC
Confidence 44444333332111 1122377888887321 12355555 4789999987543
Q ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 447 GNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 447 ~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
.+++||++. .+++++++++++|.+++++
T Consensus 397 ~~~~Ris~~--~~~e~l~~~l~~l~~~~~~ 424 (427)
T 2hox_A 397 SRYVRLSLI--KTQDDFDQLMYYLKDMVKA 424 (427)
T ss_dssp TTEEEEECS--SCHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEEec--CCHHHHHHHHHHHHHHHhh
Confidence 468999765 4899999999999998753
No 216
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.79 E-value=1.6e-17 Score=172.62 Aligned_cols=327 Identities=17% Similarity=0.069 Sum_probs=191.2
Q ss_pred CCCHHHHHHHHHHHhhcccccccc--CChHHHHHHHHHHhhCCCC--CC---EEEEeCChHHHHHHHHHHHHhcc-----
Q 011777 112 HCHPDVLNAIFEQSKLLQHATTIY--LHHAIADFAEALASKMPGN--LK---VVYFVNSGTEANELAMLMARLST----- 179 (477)
Q Consensus 112 h~~p~v~~Av~~~l~~~~~~~~~~--~~~~~~~l~~~La~~~~~~--~~---~v~~~~sGseA~~~Al~~ar~~~----- 179 (477)
+.+|.+.+++.+.+.........+ ..+...+++++|+++++.+ .+ ...+++||+||+..++..++...
T Consensus 67 ~~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~ 146 (502)
T 3hbx_A 67 WMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRK 146 (502)
T ss_dssp CCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHH
Confidence 368999999988766532211111 1233457778888888654 22 34579999999999998765420
Q ss_pred --C----CceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCee
Q 011777 180 --G----NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVA 253 (477)
Q Consensus 180 --~----~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a 253 (477)
| +..|++..++|..+...+... +. .+..++... ....++ +++|+++++ +++.
T Consensus 147 ~~G~~~~~~~vi~~~~~h~s~~~~~~~~-G~----------~~~~v~~~~-~~~~~d------~~~l~~~i~----~~t~ 204 (502)
T 3hbx_A 147 AEGKPVDKPNIVTGANVQVCWEKFARYF-EV----------ELKEVKLSE-GYYVMD------PQQAVDMVD----ENTI 204 (502)
T ss_dssp HTTCCCSCCEEEEETTCCHHHHHHHHHT-TC----------EEEEECCBT-TBCSCC------HHHHHHHCC----TTEE
T ss_pred hcCCCCCCcEEEEcCCchHHHHHHHHHc-Cc----------eeEEEecCC-CcCcCC------HHHHHHHHh----hCCE
Confidence 2 126776666654432222211 11 122222111 001112 578888776 3567
Q ss_pred EEEecccCCCCCeeeCCchhHHHHHHHHHHh------CcEEEEcCcccCccC---CCCCCccccccCCCcceeee--ccc
Q 011777 254 GFIAETIQGVGGAVELAPGYLKLVYDIVRKA------GGVCIADEVQTGFGR---TGSHYWGFETQGVIPDIVTM--AKG 322 (477)
Q Consensus 254 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~------gillI~DEv~~gfgr---~G~~~~~~~~~gv~pDivt~--sK~ 322 (477)
+|++...++++|.+.+ +++|.++|+++ |+++|+|++|.++.. .+...+.+.. ...|.+++ .|.
T Consensus 205 ~v~~~~~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~--~~~D~v~~s~hK~ 278 (502)
T 3hbx_A 205 CVAAILGSTLNGEFED----VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRL--PLVKSINVSGHKY 278 (502)
T ss_dssp EEEEEBSCTTTCCBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTS--TTEEEEEEETTTT
T ss_pred EEEEecCCCCCCcccC----HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCC--CCceEEEECcccc
Confidence 7766666666787776 99999999999 999999999987631 2211111121 23466644 487
Q ss_pred ccCccceEEEEeCH-HHH-Hhhcc--cccc-----cC--CCCcHHHHHHHHHHHHhhchh---hHHHHHHHHHHHHHHHH
Q 011777 323 IGNGLPLGAVVTTP-EIA-NVMAQ--KIQF-----NT--FGGNPVCSAGGLAVLRVIDKE---RRQAHCADVGSHLLGRL 388 (477)
Q Consensus 323 lg~G~pig~v~~~~-~~~-~~~~~--~~~~-----~t--~~~~~~~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~L 388 (477)
+.++.++|+++.+. +.. +.+.. ...+ .+ ++.+....++..++++.+..+ +..++..++.+++.+.|
T Consensus 279 l~~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L 358 (502)
T 3hbx_A 279 GLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGL 358 (502)
T ss_dssp TCCCSSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778899888763 433 22211 0000 01 222222334444455544333 44556666666776666
Q ss_pred HHHHHhCCCceeee--ccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC-----CCCEEEEeCCCCCcHH
Q 011777 389 RTLQERHDIIGDVR--GRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL-----HGNVFRIKPPMCFTKD 461 (477)
Q Consensus 389 ~~l~~~~~~~~~v~--g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-----~~~~iRi~p~~~~t~e 461 (477)
.++ +.+..+. ....++.+.+..+. ......+.+.|.++|+++..... ...++||+....+|++
T Consensus 359 ~~~----~~~~~~~~~~~~~~v~f~~~~~~------~~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~e 428 (502)
T 3hbx_A 359 EKT----ERFNIVSKDEGVPLVAFSLKDSS------CHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRT 428 (502)
T ss_dssp HTT----TCEEECSCSSSSSEEEEEESSCS------SCCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHH
T ss_pred HhC----CCEEEEeCCCCceEEEEEecCCC------cCCHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeCCCCCHH
Confidence 553 3222222 23456666663211 01134788999999998753211 2358999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 011777 462 DADFLVDALDYSMSK 476 (477)
Q Consensus 462 ~i~~~l~~l~~~l~~ 476 (477)
|++.+++.|++++++
T Consensus 429 did~li~~L~~~l~~ 443 (502)
T 3hbx_A 429 LAERLVIDIEKVMRE 443 (502)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998764
No 217
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.78 E-value=8.2e-18 Score=171.03 Aligned_cols=293 Identities=11% Similarity=0.009 Sum_probs=181.7
Q ss_pred CCHHHHHHHHHHHhhccc----cccccCChHHHHHHHHHHhhCCCCCCEEEE---eCChHHHHHHHHHHHHhccCCceEE
Q 011777 113 CHPDVLNAIFEQSKLLQH----ATTIYLHHAIADFAEALASKMPGNLKVVYF---VNSGTEANELAMLMARLSTGNLGMI 185 (477)
Q Consensus 113 ~~p~v~~Av~~~l~~~~~----~~~~~~~~~~~~l~~~La~~~~~~~~~v~~---~~sGseA~~~Al~~ar~~~~~~~ii 185 (477)
++++|++|+.++.....+ ....|..+.+.+++++++++++.. ...+ ++||++|++.+++... .+++.|+
T Consensus 36 n~~~vl~A~~~~~~~~~~~~~~~g~~y~~~~~~~l~~~la~~~g~~--~~~~~i~~~sGt~Ai~~al~al~--~~Gd~Vl 111 (431)
T 3ht4_A 36 NQFRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFGAE--AGLVRPQIISGTHAISTALFGIL--RPGDELL 111 (431)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCCSCHHHHHHHHHHHHHTTCS--EECCBTTSCSHHHHHHHHHHTTC--CTTCEEE
T ss_pred HHHHHHHHHHHhchhhhhcCCCCCCCCChhhHHHHHHHHHHHhCCC--cccccceeeCHHHHHHHHHHHhC--CCCCEEE
Confidence 467888888775322111 112355677889999999998653 3333 5699999999987542 3567888
Q ss_pred EEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecc-cCCCC
Q 011777 186 ALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAET-IQGVG 264 (477)
Q Consensus 186 ~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~ep-i~~~~ 264 (477)
+.++..|+.+...+..++. ++......|...+.++.......+ +++|+++++ +++++|++++ .++++
T Consensus 112 ~~~~~~y~~~~~~~~l~g~--~~~~~~~~G~~~~~v~~~~~~~~d------~e~l~~~l~----~~tk~V~i~~sp~np~ 179 (431)
T 3ht4_A 112 YITGKPYDTLEEIVGVRGK--GVGSFKEYNIGYNAVPLTEGGLVD------FEAVAAAIH----SNTKMIGIQRSKGYAT 179 (431)
T ss_dssp ECSSSCCTTHHHHTTSSSC--SSSCSGGGTCEEEECCBCTTSSBC------HHHHHHHCC----TTEEEEEEECSCTTSS
T ss_pred EeCCCCchhHHHHHhhccc--ccchHHHcCCEEEEeCCCCCCCcC------HHHHHhhcC----CCCeEEEEECCCCCCC
Confidence 8874455555544443322 111111124444333322111112 578888775 4789999995 55455
Q ss_pred CeeeCCchhHHHHHHHHHH--hCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc--cceEEEEeCHHHHH
Q 011777 265 GAVELAPGYLKLVYDIVRK--AGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG--LPLGAVVTTPEIAN 340 (477)
Q Consensus 265 G~~~~~~~~l~~l~~l~~~--~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G--~pig~v~~~~~~~~ 340 (477)
| ...+...+++|.++|++ ||+++|+||+|+.+.... ... ..+....+.+++|.++|| .+.|++++++++++
T Consensus 180 ~-~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~-~~~---~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~ 254 (431)
T 3ht4_A 180 R-PSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQ-EPC---HVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVE 254 (431)
T ss_dssp S-CCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSC-CGG---GTTCSEEEEETTSGGGTTTCSSCEEEEECHHHHH
T ss_pred C-CcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCC-Ccc---ccCCeEEEcCccccCCCCCCCceEEEEecHHHHH
Confidence 4 45577889999999999 999999999999776544 222 224444455789999974 56699999999988
Q ss_pred hhcccc----cccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhC-CCceeeeccceeEEEEEeeC
Q 011777 341 VMAQKI----QFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERH-DIIGDVRGRGLMVGMELVTD 415 (477)
Q Consensus 341 ~~~~~~----~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~-~~~~~v~g~g~~~~i~~~~~ 415 (477)
.+.... .+.+.+.++..+.+++..++.+ +...++..++..++.+.|+++..+. |. ...++.++++.+.+.
T Consensus 255 ~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~a~~l~~~L~~~g~~v~p~-~~~~~~~li~~i~l~-- 329 (431)
T 3ht4_A 255 ACAYRLTSPGIGAEAGASLYSLQEMYQGFFLA--PHVAGQALKGAIFTAAFLEKLGMNTSPA-WNAPRTDLIQSVQFD-- 329 (431)
T ss_dssp HHHHHHSCTTTTTSCSCCCSCSHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTCCEESC-TTSCCSSSCCEEECC--
T ss_pred HHHHHhccCCcccccCccHHHHHHHHhHhhhH--HHHHHHHHHHHHHHHHHHHhCcCEecCC-CCCCCccEEEEEEeC--
Confidence 876421 1122222222233344445433 3456777788888888888763211 11 223455667888773
Q ss_pred CCCCCccHHHHHHHHHHHHHcC
Q 011777 416 RKEKTPAKAETAVLFEKLRELG 437 (477)
Q Consensus 416 ~~~~~~~~~~~~~~~~~l~~~G 437 (477)
+.....++++.|.+..
T Consensus 330 ------~~~~~~~~~~~l~~~~ 345 (431)
T 3ht4_A 330 ------DKDRMIAFCQAIQYAS 345 (431)
T ss_dssp ------CHHHHHHHHHHHHHTS
T ss_pred ------CHHHHHHHHHHHHhcC
Confidence 2345677888888763
No 218
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.78 E-value=1.2e-16 Score=166.44 Aligned_cols=313 Identities=14% Similarity=0.064 Sum_probs=178.8
Q ss_pred HHHHHHHHHHhhCCCC--CCEEEEeCChHHHHHHHHHHHHhcc------------CCceEEEEccCccCCcccccccccC
Q 011777 139 AIADFAEALASKMPGN--LKVVYFVNSGTEANELAMLMARLST------------GNLGMIALRNAYHGGSSGTIGLTAL 204 (477)
Q Consensus 139 ~~~~l~~~La~~~~~~--~~~v~~~~sGseA~~~Al~~ar~~~------------~~~~ii~~~~~yhG~~~~~~~~~~~ 204 (477)
...+++++++++++.+ .+.++|++|||+||..|+..++... ++..|++.+.. |.....+....+.
T Consensus 136 le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~-H~s~~~~~~~~g~ 214 (511)
T 3vp6_A 136 MEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQS-HYSIKKAGAALGF 214 (511)
T ss_dssp HHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTS-CTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCc-hHHHHHHHHHcCC
Confidence 3456667778777654 3589999999999999999887531 23344444444 4333222222221
Q ss_pred CCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc--CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHH
Q 011777 205 NTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG--TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVR 282 (477)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~ 282 (477)
.. ..+..++... ....+ .++|+++|+.. ....+.+|+++..+++.|.+.+ |++|.++|+
T Consensus 215 g~-------~~~~~v~~d~--~~~~d------~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~----l~~I~~ia~ 275 (511)
T 3vp6_A 215 GT-------DNVILIKCNE--RGKII------PADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADICE 275 (511)
T ss_dssp CG-------GGEEEECBCT--TSCBC------HHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCC----HHHHHHHHH
T ss_pred CC-------CcEEEeecCC--CCccC------HHHHHHHHHHHHhcCCCcEEEEEecCCCCCccccc----HHHHHHHHH
Confidence 00 0122222211 11122 58888888632 2223778888888888887766 999999999
Q ss_pred HhCcEEEEcCcccCccCCCCCCccccccCC-Ccceee--ecccccCccceEEEEeCHH-HHHhhccc--ccc--------
Q 011777 283 KAGGVCIADEVQTGFGRTGSHYWGFETQGV-IPDIVT--MAKGIGNGLPLGAVVTTPE-IANVMAQK--IQF-------- 348 (477)
Q Consensus 283 ~~gillI~DEv~~gfgr~G~~~~~~~~~gv-~pDivt--~sK~lg~G~pig~v~~~~~-~~~~~~~~--~~~-------- 348 (477)
+||+++++|++|.+..... .-+.....|+ ..|+++ .+|.+++.+..|+++.+.+ +....... .+.
T Consensus 276 ~~~~~lhvD~a~~~~~~~~-~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~ 354 (511)
T 3vp6_A 276 KYNLWLHVDAAWGGGLLMS-RKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYD 354 (511)
T ss_dssp HHTCEEEEEETTGGGGGGC-TTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSC
T ss_pred HcCCEEEEEccchhhHhhC-hhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCcccccc
Confidence 9999999999998643322 1111222233 457776 4599987677888888654 44432110 000
Q ss_pred -------cCC----CCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceee---eccceeEEEEEee
Q 011777 349 -------NTF----GGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDV---RGRGLMVGMELVT 414 (477)
Q Consensus 349 -------~t~----~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v---~g~g~~~~i~~~~ 414 (477)
.++ ..+.+.+.+++..+..-.-+++.++..++.+++++.|+++ +.+.-+ .....++.+.+..
T Consensus 355 ~~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~----pg~~l~~~~~p~~~~v~f~~~p 430 (511)
T 3vp6_A 355 VSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR----EEFEMVFNGEPEHTNVCFWYIP 430 (511)
T ss_dssp GGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC----TTEEESSSSCCSSSCEEEEECC
T ss_pred cccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC----CCEEEEecCCCCeEEEEEEEeC
Confidence 000 1134444444443321112456667777777777777553 322221 2344455555432
Q ss_pred CCCCC-Ccc-------HHHHHHHHHHHHHcCceeecc---CCCCCEEEEeC-CCCCcHHHHHHHHHHHHHHHhh
Q 011777 415 DRKEK-TPA-------KAETAVLFEKLRELGVLVGKG---GLHGNVFRIKP-PMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 415 ~~~~~-~~~-------~~~~~~~~~~l~~~Gv~v~~~---~~~~~~iRi~p-~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
..... ... .....++.+.|.++|+++... ....+++|+++ +..++++||+.+++.|++.-++
T Consensus 431 ~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~ 504 (511)
T 3vp6_A 431 QSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQD 504 (511)
T ss_dssp GGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 21100 001 112346888999999755431 11124799988 6788999999999999887543
No 219
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.76 E-value=4.9e-17 Score=167.28 Aligned_cols=319 Identities=16% Similarity=0.118 Sum_probs=178.9
Q ss_pred CCHHHHHHHHHHHhh-cccc--cccc------CChHHHHHHHHHHhhCCCCCC---EEEEeCChHHHHHHHHHHHHhccC
Q 011777 113 CHPDVLNAIFEQSKL-LQHA--TTIY------LHHAIADFAEALASKMPGNLK---VVYFVNSGTEANELAMLMARLSTG 180 (477)
Q Consensus 113 ~~p~v~~Av~~~l~~-~~~~--~~~~------~~~~~~~l~~~La~~~~~~~~---~v~~~~sGseA~~~Al~~ar~~~~ 180 (477)
.+|+|.+|+.+.+.+ ..+. ...+ ........+++++++++.+.+ ..++++||++||.++++... .+
T Consensus 66 ~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al~--~p 143 (490)
T 2a7v_A 66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALL--QP 143 (490)
T ss_dssp CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHC--CS
T ss_pred CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHHc--CC
Confidence 589999999887643 2111 1111 112223445889999976553 34677799999999998653 36
Q ss_pred CceEEEEccCccCCcc-cc------cccccCCCCCCCCCCCCeeeecCC-CCcCCCCCCCHHHHHHHHHHHHhccCCCCe
Q 011777 181 NLGMIALRNAYHGGSS-GT------IGLTALNTWKYPIPQGEIHHVVNP-DPYHGSFGSDAARYAQDLQDHIDFGTSGKV 252 (477)
Q Consensus 181 ~~~ii~~~~~yhG~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~le~~i~~~~~~~~ 252 (477)
+++|++.+..|.|+.. +. ....+. .+..++++ ++..... | .++|++++... ++
T Consensus 144 GD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~----------~~~~~~~~vd~~~~~i--D----~d~le~~l~~~---~~ 204 (490)
T 2a7v_A 144 HDRIMGLDLPDGGHLTHGYMSDVKRISATSI----------FFESMPYKLNPKTGLI--D----YNQLALTARLF---RP 204 (490)
T ss_dssp CEECCC-----------------------------------------CCBCTTTCSB--C----HHHHHHHHHHH---CC
T ss_pred CCEecccCccccccccchhhhcchhHHHcCC----------eEEEEecccccccCCc--C----HHHHHHHHhhc---CC
Confidence 6788887776644321 10 111110 01111111 0001111 2 58888888622 34
Q ss_pred eEEEec-ccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc-CccCCCCCCccccccCCCccee--eecccccCccc
Q 011777 253 AGFIAE-TIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT-GFGRTGSHYWGFETQGVIPDIV--TMAKGIGNGLP 328 (477)
Q Consensus 253 a~vi~e-pi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~G~p 328 (477)
++|++. |.++ ...+ +++|+++|++||++||+|++|. |+...|.....++ + .|++ +++|+++ |++
T Consensus 205 klIi~~~s~~~---~~~d----l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~--~--aDiv~~S~hK~l~-Gp~ 272 (490)
T 2a7v_A 205 RLIIAGTSAYA---RLID----YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK--H--ADIVTTTTHKTLR-GAR 272 (490)
T ss_dssp SEEEECCSSCC---SCCC----HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG--T--CSEEEEESSGGGC-SCS
T ss_pred cEEEEcCCCCC---Cccc----HHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC--C--CCEEEECCcccCc-ccc
Confidence 566664 3433 2223 8999999999999999999975 4322331111122 2 4666 5679995 456
Q ss_pred eEEEEeCHH---------------HHHhhcccccccCCCC-cHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHH
Q 011777 329 LGAVVTTPE---------------IANVMAQKIQFNTFGG-NPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLR 389 (477)
Q Consensus 329 ig~v~~~~~---------------~~~~~~~~~~~~t~~~-~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~ 389 (477)
.|+++++++ +.+.+......++.++ ++..+++..++++.+.. +++.+++.++.+++++.|.
T Consensus 273 GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~ 352 (490)
T 2a7v_A 273 SGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALL 352 (490)
T ss_dssp CEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 699998764 3444443323333333 34445554556665432 4567788888889988887
Q ss_pred HHHHhCCCceeeec-cceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC-------CCCCEEEEeCCC----C
Q 011777 390 TLQERHDIIGDVRG-RGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG-------LHGNVFRIKPPM----C 457 (477)
Q Consensus 390 ~l~~~~~~~~~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------~~~~~iRi~p~~----~ 457 (477)
+. .+.++. .+ ...++++++... .....++.+.|.+.||.+..+. ...+.|||..+. .
T Consensus 353 ~~--G~~v~~--~~t~t~lv~vdl~~~-------g~~~~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g 421 (490)
T 2a7v_A 353 ER--GYSLVS--GGTDNHLVLVDLRPK-------GLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQ 421 (490)
T ss_dssp HT--TCEEGG--GSCSSSEEEEECTTT-------TCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTT
T ss_pred Hc--CcEEec--CCCCCeEEEEEeCCC-------CCCHHHHHHHHHhCCeEEecCccCCCCCCCCCCceEecccccccCC
Confidence 74 222111 11 234666665321 1113457778888999997431 124679996543 4
Q ss_pred CcHHHHHHHHHHHHHHHh
Q 011777 458 FTKDDADFLVDALDYSMS 475 (477)
Q Consensus 458 ~t~e~i~~~l~~l~~~l~ 475 (477)
++++|++++++.|.+++.
T Consensus 422 ~~~~d~~~~~~~i~~~l~ 439 (490)
T 2a7v_A 422 FREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 689999999999988874
No 220
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.76 E-value=8.2e-17 Score=161.17 Aligned_cols=314 Identities=11% Similarity=0.021 Sum_probs=192.3
Q ss_pred CCHHHHHHHHHHHhhccccccccCChHHHHHHHHH-HhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCc
Q 011777 113 CHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEAL-ASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAY 191 (477)
Q Consensus 113 ~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~L-a~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~y 191 (477)
..|++.+++.+.++...+. ...+...+|++.+ +++++. .+.+++++||++|+..+++.+. ..+++.||+..++|
T Consensus 14 ~~~~i~~a~~~~~~~~~~~---~~~~~~~~l~~~~~a~~~g~-~~~~v~~~sgt~al~~al~~l~-~~~Gd~Vi~~~~~~ 88 (377)
T 3ju7_A 14 PVIEYLDELKEIDASHIYT---NYGPINQRFEQTIMSGFFQN-RGAVTTVANATLGLMAAIQLKK-RKKGKYALMPSFTF 88 (377)
T ss_dssp CGGGGHHHHHHHHHHTCCS---SSCHHHHHHHHHHHHHTSTT-CSEEEEESCHHHHHHHHHHHHS-CTTCCEEEEESSSC
T ss_pred CcHHHHHHHHHHHHcCCcc---cCCHHHHHHHHHHHHHHhCC-CCeEEEeCCHHHHHHHHHHHcC-CCCcCEEEECCCCc
Confidence 3578899999988764321 1246788999999 999862 4689999999999999998652 23567899999998
Q ss_pred cCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCc
Q 011777 192 HGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAP 271 (477)
Q Consensus 192 hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~ 271 (477)
++........ |...+.++... ..+..| .+++++++... ..++++|+ |+ +..|...+
T Consensus 89 ~~~~~~~~~~-------------G~~~~~v~~~~-~~~~~d----~~~l~~~i~~~-~~~tk~v~--~~-~~~G~~~~-- 144 (377)
T 3ju7_A 89 PATPLAAIWC-------------GLEPYFIDISI-DDWYMD----KTVLWDKIEEL-KEEVAIVV--PY-ATFGSWMN-- 144 (377)
T ss_dssp THHHHHHHHT-------------TCEEEEECBCT-TTCSBC----HHHHHHHHHHH-GGGEEEEC--CB-CGGGBCCC--
T ss_pred HHHHHHHHHc-------------CCEEEEEecCC-ccCCcC----HHHHHHHHhcC-CCCceEEE--EE-CCCCCccC--
Confidence 8754433222 22222221110 112212 47888877311 01277776 33 33565554
Q ss_pred hhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccccc-CCCcceeeec----ccccCccceEEEEe-CHHHHHhhccc
Q 011777 272 GYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ-GVIPDIVTMA----KGIGNGLPLGAVVT-TPEIANVMAQK 345 (477)
Q Consensus 272 ~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~-gv~pDivt~s----K~lg~G~pig~v~~-~~~~~~~~~~~ 345 (477)
+++|.++|+ ||+++|+|++|+ +|. .+..... +...|+.++| |.+++| ..|++++ ++++.+.+...
T Consensus 145 --~~~i~~la~-~~~~vi~D~a~a-~g~----~~~~~~~g~~~~d~~~~S~~~~K~l~~g-~gG~~~~~~~~l~~~~~~~ 215 (377)
T 3ju7_A 145 --LEEYEELEK-KGVPVVVDAAPG-FGL----MNGGMHYGQDFSGMIIYSFHATKPFGIG-EGGLIYSKNEEDIQRIKRM 215 (377)
T ss_dssp --CHHHHHHHH-TTCCBEEECTTC-TTC----EETTEETTTTCSSEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHH
T ss_pred --HHHHHHHHh-cCCEEEEECCCc-cCC----eECCEeccCCCCcEEEEECCCCCcCCCC-CcEEEEECCHHHHHHHHHH
Confidence 799999999 999999999997 431 1111122 2224555544 999875 4577776 46666655432
Q ss_pred cc------------ccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceee-ecc---ceeEE
Q 011777 346 IQ------------FNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDV-RGR---GLMVG 409 (477)
Q Consensus 346 ~~------------~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v-~g~---g~~~~ 409 (477)
.. +..+..+++.++.+++.++.+ +...++.+++.+++.+.|.++.. ....... .+. ..++.
T Consensus 216 ~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l--~~~~~~~~~~~~~~~~~L~~~~~-~~~~~~~~~~~~~~~~~~~ 292 (377)
T 3ju7_A 216 GNFGFDTNRECTMMGFNCKMSEYAAAIGIATMKKW--DDKLKERTRISEWYKQLLQSNGL-MKKGWQLQKTEAVIQQFMP 292 (377)
T ss_dssp TBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTT-TTTTCBCCCCSCBCCSSEE
T ss_pred HhcCCCCCCceeeccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCC-ccccccCCCCCcceEEEEE
Confidence 21 224456678877777777654 44566777777777777766421 0011111 111 11223
Q ss_pred EEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC-----------------------CCCEEEEeCCCCCcHHHHHHH
Q 011777 410 MELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL-----------------------HGNVFRIKPPMCFTKDDADFL 466 (477)
Q Consensus 410 i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-----------------------~~~~iRi~p~~~~t~e~i~~~ 466 (477)
+.+. + ....+.+.+.|.++||.+..... ....+|+......|++|++++
T Consensus 293 ~~~~-~-------~~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v 364 (377)
T 3ju7_A 293 ILCP-E-------EVRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQI 364 (377)
T ss_dssp EECC-T-------TSCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHH
T ss_pred EEeC-C-------hhhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHH
Confidence 3221 1 11246789999999998865310 024688877778899999999
Q ss_pred HHHHHHHHh
Q 011777 467 VDALDYSMS 475 (477)
Q Consensus 467 l~~l~~~l~ 475 (477)
++.|.+++.
T Consensus 365 ~~~l~~~~~ 373 (377)
T 3ju7_A 365 VICLGQKVV 373 (377)
T ss_dssp HHHHTC---
T ss_pred HHHHHHHHh
Confidence 999987764
No 221
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.76 E-value=3.5e-16 Score=161.97 Aligned_cols=326 Identities=10% Similarity=-0.053 Sum_probs=181.9
Q ss_pred HHHHHHHHHHhhccccccc--cCChHHHHHHHHHHhhCCCCC---------CEEEEeCChHHHHHHHHHHHHhcc-----
Q 011777 116 DVLNAIFEQSKLLQHATTI--YLHHAIADFAEALASKMPGNL---------KVVYFVNSGTEANELAMLMARLST----- 179 (477)
Q Consensus 116 ~v~~Av~~~l~~~~~~~~~--~~~~~~~~l~~~La~~~~~~~---------~~v~~~~sGseA~~~Al~~ar~~~----- 179 (477)
.+.+++...+......... .......+++++++++++.+. ..++||+||||||..|+..++...
T Consensus 89 ~~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~ 168 (486)
T 1js3_A 89 MLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQ 168 (486)
T ss_dssp HHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhh
Confidence 4666666665432211111 112334567777888876543 368999999999999998876421
Q ss_pred ---CC-------ce--EEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc
Q 011777 180 ---GN-------LG--MIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG 247 (477)
Q Consensus 180 ---~~-------~~--ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~ 247 (477)
|. ++ |++.+.+|+.....+... +. .+..++. ......+ +++|+++|+..
T Consensus 169 ~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~-G~----------~v~~v~~--d~~~~~d------~~~L~~~i~~~ 229 (486)
T 1js3_A 169 AASPGLTQGAVLEKLVAYASDQAHSSVERAGLIG-GV----------KLKAIPS--DGKFAMR------ASALQEALERD 229 (486)
T ss_dssp HHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHH-TC----------EEEEECC--CTTSCCC------HHHHHHHHHHH
T ss_pred ccCccchhcccCCCEEEEECCCCcHHHHHHHHhC-CC----------ceEEeec--CCCCCCC------HHHHHHHHHHH
Confidence 21 23 455555655433222211 11 1222322 1111222 58888888632
Q ss_pred C--CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCC-Ccceeee--ccc
Q 011777 248 T--SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGV-IPDIVTM--AKG 322 (477)
Q Consensus 248 ~--~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv-~pDivt~--sK~ 322 (477)
. ...+.+|++...+++.|.+.+ +++|.++|++||+++|+|++|.++......+ .....++ ..|.+++ +|.
T Consensus 230 ~~~g~~p~~vv~~~~~n~tG~~~~----l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~-~~~~~g~~~adsi~~~~hK~ 304 (486)
T 1js3_A 230 KAAGLIPFFVVATLGTTSCCSFDN----LLEVGPICHEEDIWLHVDAAYAGSAFICPEF-RHLLNGVEFADSFNFNPHKW 304 (486)
T ss_dssp HHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSTTT-GGGGTTGGGCSEEEECHHHH
T ss_pred HhCCCCceEEEEeCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhHHHHHHCHHH-HHHhcCccccCeeEEchhhh
Confidence 1 112235555555566776766 9999999999999999999998653221011 0011122 3476664 599
Q ss_pred ccCccceEEEEeCHH--HHHhhccc---ccc-----------------cCCCCcHHHHHHHHHHHHhhchhhHHHHHHHH
Q 011777 323 IGNGLPLGAVVTTPE--IANVMAQK---IQF-----------------NTFGGNPVCSAGGLAVLRVIDKERRQAHCADV 380 (477)
Q Consensus 323 lg~G~pig~v~~~~~--~~~~~~~~---~~~-----------------~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~ 380 (477)
++..+++|+++++++ +.+.+... ... .+.....+++.+++..+..-.-++..++..++
T Consensus 305 ~~~p~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~ 384 (486)
T 1js3_A 305 LLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQL 384 (486)
T ss_dssp SSCCSSCEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcceEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 887788999999754 24444210 000 00012244444444443211113455666667
Q ss_pred HHHHHHHHHHHHHhCCCceee-eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC--CCCEEEEeC-CC
Q 011777 381 GSHLLGRLRTLQERHDIIGDV-RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL--HGNVFRIKP-PM 456 (477)
Q Consensus 381 ~~~l~~~L~~l~~~~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p-~~ 456 (477)
.+++.+.|+++ +.+..+ ...+.++.+.+.. ......++.+.|.++|+++...+. ..+++|++. ..
T Consensus 385 a~~l~~~L~~~----~~~~~~~~~~~~~v~f~~~~-------~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~ 453 (486)
T 1js3_A 385 SHEFEAFVLQD----PRFEVCAEVTLGLVCFRLKG-------SDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSR 453 (486)
T ss_dssp HHHHHHHHHHC----TTEEECSCCCSSEEEEEESS-------CHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCT
T ss_pred HHHHHHHHhcC----CCeEEeCCCceeEEEEEecC-------hHHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCC
Confidence 77777776653 222211 2344555555421 112346788888888976433222 136899985 44
Q ss_pred CCcHHHHHHHHHHHHHHHhh
Q 011777 457 CFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 457 ~~t~e~i~~~l~~l~~~l~~ 476 (477)
..|++||++++++|++++++
T Consensus 454 ~~t~~di~~~~~~l~~~~~~ 473 (486)
T 1js3_A 454 KVESGHVRLAWEHIRGLAAE 473 (486)
T ss_dssp TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 57899999999999988753
No 222
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.75 E-value=3.1e-16 Score=162.05 Aligned_cols=303 Identities=13% Similarity=-0.023 Sum_probs=173.8
Q ss_pred HHHHHHHHHHhhCCCCC----------CEEEEeCChHHHHHHHHHHHHhcc-----------------CCceEEEEccCc
Q 011777 139 AIADFAEALASKMPGNL----------KVVYFVNSGTEANELAMLMARLST-----------------GNLGMIALRNAY 191 (477)
Q Consensus 139 ~~~~l~~~La~~~~~~~----------~~v~~~~sGseA~~~Al~~ar~~~-----------------~~~~ii~~~~~y 191 (477)
...++.++++++++.+. ...+|++|||+||..|+..+|... ++..|++.+ ..
T Consensus 119 lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-~~ 197 (481)
T 4e1o_A 119 LEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASD-QA 197 (481)
T ss_dssp HHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEET-TS
T ss_pred HHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcC-cc
Confidence 34556666777764332 267899999999999999987531 233444444 44
Q ss_pred cCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc--CCCCeeEEEecccCCCCCeeeC
Q 011777 192 HGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG--TSGKVAGFIAETIQGVGGAVEL 269 (477)
Q Consensus 192 hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~ 269 (477)
|.....+....+ ...+.+|......++ .++|+++|+.. ....+.+|++....++.|.+.+
T Consensus 198 H~s~~~~~~~~g------------~~~~~v~~~~~~~~d------~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~ 259 (481)
T 4e1o_A 198 HSSVEKAGLISL------------VKMKFLPVDDNFSLR------GEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDC 259 (481)
T ss_dssp CHHHHHHHHHHT------------CEEEEECCCTTSCCC------HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC
T ss_pred hHHHHHHHHhCC------------CceEEEEcCCCCcCC------HHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCC
Confidence 443332222222 222222221112222 58888888632 1122555666666666787766
Q ss_pred CchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCC-Ccceeee--cccccCccceEEEEeCHH-HH-Hhhcc
Q 011777 270 APGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGV-IPDIVTM--AKGIGNGLPLGAVVTTPE-IA-NVMAQ 344 (477)
Q Consensus 270 ~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv-~pDivt~--sK~lg~G~pig~v~~~~~-~~-~~~~~ 344 (477)
+++|.++|++||+++++|++|.++...+ ..+.....|+ ..|.+++ .|.++.....|+++.+++ .. +.+..
T Consensus 260 ----l~~I~~la~~~~~~lhvDaA~g~~~~~~-~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~ 334 (481)
T 4e1o_A 260 ----LSELGPICAREGLWLHIDAAYAGTAFLC-PEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSV 334 (481)
T ss_dssp ----HHHHHHHHHHHTCEEEEECTTGGGGGGS-GGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCC
T ss_pred ----HHHHHHHHHHcCCeEEeehhhHHHHHhC-hhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcC
Confidence 9999999999999999999998653322 1111112243 3477765 599987777888877654 32 22211
Q ss_pred cc-c------c-----------cCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceee-eccc
Q 011777 345 KI-Q------F-----------NTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDV-RGRG 405 (477)
Q Consensus 345 ~~-~------~-----------~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v-~g~g 405 (477)
.. + . .+.....+.+.+++..+..-.-+++.++..++.+++.+.|+++ +.+.-+ ....
T Consensus 335 ~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----~g~~~~~~~~~ 410 (481)
T 4e1o_A 335 NPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRND----PSFEIPAKRHL 410 (481)
T ss_dssp CCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----TTEECCSCCCS
T ss_pred CchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC----CCeEEecCCce
Confidence 10 0 0 0001124444444444322112445666667777777776553 222211 2234
Q ss_pred eeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCce-eeccCCC-CCEEEEeCCC-CCcHHHHHHHHHHHHHHHhh
Q 011777 406 LMVGMELVTDRKEKTPAKAETAVLFEKLRELGVL-VGKGGLH-GNVFRIKPPM-CFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 406 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~-v~~~~~~-~~~iRi~p~~-~~t~e~i~~~l~~l~~~l~~ 476 (477)
.++.+.+.. ......++.+.|.++|++ +.++... ..++||+... ..|++||++++++|++++++
T Consensus 411 ~~v~f~~~~-------~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~ 477 (481)
T 4e1o_A 411 GLVVFRLKG-------PNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDAATL 477 (481)
T ss_dssp SEEEEEESS-------CHHHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCC-------chHHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 455666521 223456788899998854 4443222 3579998654 45899999999999988764
No 223
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.73 E-value=9.1e-16 Score=158.24 Aligned_cols=302 Identities=11% Similarity=-0.002 Sum_probs=172.4
Q ss_pred HHHHHHHHHHhhCCCCC---------CEEEEeCChHHHHHHHHHHHHhcc-----------------CCceEEEEccCcc
Q 011777 139 AIADFAEALASKMPGNL---------KVVYFVNSGTEANELAMLMARLST-----------------GNLGMIALRNAYH 192 (477)
Q Consensus 139 ~~~~l~~~La~~~~~~~---------~~v~~~~sGseA~~~Al~~ar~~~-----------------~~~~ii~~~~~yh 192 (477)
...++.++++++++.+. ...+||+|||+||..|+..+|... ++..|++. ...|
T Consensus 114 lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s-~~~H 192 (475)
T 3k40_A 114 LEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCS-DQAH 192 (475)
T ss_dssp HHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEE-TTSC
T ss_pred HHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEEC-CCch
Confidence 34556667788875442 268999999999999999987542 11234444 4444
Q ss_pred CCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc--CCCCeeEEEecccCCCCCeeeCC
Q 011777 193 GGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG--TSGKVAGFIAETIQGVGGAVELA 270 (477)
Q Consensus 193 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~ 270 (477)
-....+.... |...+.+|..... .+ .++|+++|+.. ....+.+|++....++.|.+.+
T Consensus 193 ~s~~~~~~~~------------g~~~~~v~~d~~~-~d------~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~- 252 (475)
T 3k40_A 193 SSVERAGLLG------------GVKLRSVQSENHR-MR------GAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY- 252 (475)
T ss_dssp HHHHHHHHHH------------TCEEEEECCBTTB-CC------HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC-
T ss_pred HHHHHHHHHc------------CCceEEEECCCCC-cC------HHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC-
Confidence 3333222222 2222222222222 22 58888888632 1122455665555566777766
Q ss_pred chhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCC-Ccceeee--cccccCccceEEEEeCHH-H-HHhhccc
Q 011777 271 PGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGV-IPDIVTM--AKGIGNGLPLGAVVTTPE-I-ANVMAQK 345 (477)
Q Consensus 271 ~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv-~pDivt~--sK~lg~G~pig~v~~~~~-~-~~~~~~~ 345 (477)
+++|.++|++||+++++|++|.+....+ ..+.....++ ..|.+++ .|.+++....|+++.+++ . .+.+...
T Consensus 253 ---l~~I~~la~~~~~~lhvD~A~~~~~~~~-~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~ 328 (475)
T 3k40_A 253 ---LDECGPVGNKHNLWIHVDAAYAGSAFIC-PEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVD 328 (475)
T ss_dssp ---HHHHHHHHHHTTCEEEEECTTGGGGGGS-GGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC-------
T ss_pred ---HHHHHHHHHHhCCeEEEeHHhHHHHHhC-HhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCC
Confidence 9999999999999999999997642222 1111112233 3577765 599987777888888654 2 2222110
Q ss_pred ----cc---cc-------CC-CCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCCCceee-eccce
Q 011777 346 ----IQ---FN-------TF-GGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERHDIIGDV-RGRGL 406 (477)
Q Consensus 346 ----~~---~~-------t~-~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v-~g~g~ 406 (477)
.. .. ++ .+-+.......++|+.+.. +++.++..++.+++.++|+++ +.+.-+ .....
T Consensus 329 ~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----~g~~l~~~~~~~ 404 (475)
T 3k40_A 329 PLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVAD----SRFELAAEINMG 404 (475)
T ss_dssp --------------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----TTEEESSCCBTT
T ss_pred ccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC----CCEEEecCCceE
Confidence 00 00 00 1111222333344444333 456667777777787777664 222111 22344
Q ss_pred eEEEEEeeCCCCCCccHHHHHHHHHHHHHcCcee-eccCCC-CCEEEEeCC-CCCcHHHHHHHHHHHHHHHhh
Q 011777 407 MVGMELVTDRKEKTPAKAETAVLFEKLRELGVLV-GKGGLH-GNVFRIKPP-MCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 407 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v-~~~~~~-~~~iRi~p~-~~~t~e~i~~~l~~l~~~l~~ 476 (477)
++.+.+.. ......++.+.|.++|.++ .++... ..++||++. ..+|++||++++++|+++.++
T Consensus 405 iv~f~~~~-------~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~ 470 (475)
T 3k40_A 405 LVCFRLKG-------SNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADE 470 (475)
T ss_dssp EEEEEESS-------CHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCC-------chHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 55665521 2234567888999888754 333222 368999865 345899999999999988764
No 224
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.72 E-value=2.1e-16 Score=161.37 Aligned_cols=288 Identities=14% Similarity=0.113 Sum_probs=166.1
Q ss_pred hHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCee
Q 011777 138 HAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIH 217 (477)
Q Consensus 138 ~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~ 217 (477)
+...+++++++++++.+.+++.+++||+.++++++..++ ..++++||+.++.|+............ .|+.
T Consensus 108 ~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~-~~~gd~Viv~~~~h~s~~~~~~~~a~~---------~G~~ 177 (438)
T 1wyu_A 108 QATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALR-ETGRMGVLVSQGVHPEYRAVLRAYLEA---------VGAK 177 (438)
T ss_dssp HHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHH-HHTCCEEEEETTSCHHHHHHHHHHHHH---------TTCE
T ss_pred HHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHh-cCCCCEEEEcCccCHhHHHHHHHHHHH---------CCCE
Confidence 456789999999987655567899999955555544333 346778888887776543222110000 0222
Q ss_pred eecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCc-ccC
Q 011777 218 HVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEV-QTG 296 (477)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv-~~g 296 (477)
.+.++.. ....+ +++ ++ +++++|+++.. +++|.+.+ +++|.++|++||+++|+|-- ++
T Consensus 178 v~~v~~~-~~~~d---------~~~-i~----~~t~~v~i~~p-n~tG~~~~----l~~i~~la~~~g~~vivd~d~~a- 236 (438)
T 1wyu_A 178 LLTLPLE-GGRTP---------LPE-VG----EEVGAVVVQNP-NFLGALED----LGPFAEAAHGAGALFVAVADPLS- 236 (438)
T ss_dssp EEEECCB-TTBCC---------CCC-CC----TTEEEEEEESS-CTTSBCCC----HHHHHHHHHHTTCEEEEECCTTG-
T ss_pred EEEEcCc-CCccC---------HHH-hC----CCeEEEEEECC-CCCeEEec----HHHHHHHHHHcCCEEEEEechhh-
Confidence 2222210 01111 111 32 35777777766 77787776 99999999999999995522 22
Q ss_pred ccCCCCCCccccccCCCcceeeec-cccc-----CccceEEEEeCHHHHHhhcccc------------------------
Q 011777 297 FGRTGSHYWGFETQGVIPDIVTMA-KGIG-----NGLPLGAVVTTPEIANVMAQKI------------------------ 346 (477)
Q Consensus 297 fgr~G~~~~~~~~~gv~pDivt~s-K~lg-----~G~pig~v~~~~~~~~~~~~~~------------------------ 346 (477)
+|... .. ..+ .+|++++| |.++ +|.++|++++++++.+.+....
T Consensus 237 ~g~~~-~~---~~~--g~D~~~~s~kk~~~~~~~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~ 310 (438)
T 1wyu_A 237 LGVLK-PP---GAY--GADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYI 310 (438)
T ss_dssp GGTBC-CH---HHH--TCSEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHH
T ss_pred ccCcC-CC---ccC--CCCEEEECCcccCCCccCCCCCeeEEEEcHHHHHhCCCceeccccccCCCcceeeecccccccc
Confidence 32211 11 112 36787764 7543 3568999999999877653211
Q ss_pred --cccCCCC---cHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCC
Q 011777 347 --QFNTFGG---NPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKE 418 (477)
Q Consensus 347 --~~~t~~~---~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~ 418 (477)
..+|++. +.++..++...+..+.. ++..++..++.+++.++|+++ +.+........+..+.+..+
T Consensus 311 r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~--- 383 (438)
T 1wyu_A 311 RRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEV----PGVRPFTPKPFFNEFALALP--- 383 (438)
T ss_dssp HGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----TTCEECSCSSBCSEEEEECS---
T ss_pred chhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcC----CCeEECCCCCeEEEEEEeCC---
Confidence 1123332 23333222223444433 234555566666666666543 21211111123333333211
Q ss_pred CCccHHHHHHHHHHHHHcCcee--eccCCC-CCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777 419 KTPAKAETAVLFEKLRELGVLV--GKGGLH-GNVFRIKPPMCFTKDDADFLVDALDYSM 474 (477)
Q Consensus 419 ~~~~~~~~~~~~~~l~~~Gv~v--~~~~~~-~~~iRi~p~~~~t~e~i~~~l~~l~~~l 474 (477)
....++.+.|.++||.+ .++..+ .+++||++...+|++|+++++++|++++
T Consensus 384 -----~~~~~~~~~L~~~gi~v~~~~~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 384 -----KDPEAVRRALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp -----SCHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred -----CCHHHHHHHHHHCCceeccccccccCCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 01457888999999998 444322 5799999998899999999999998865
No 225
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.70 E-value=4.7e-16 Score=154.64 Aligned_cols=321 Identities=12% Similarity=0.009 Sum_probs=189.1
Q ss_pred CCCHHHHHHHHHHHhhccc-cccc--------cCChHHHHHHHHHHhhCCCCC-CEEEE-eCChHHHHHHHHHHHHhccC
Q 011777 112 HCHPDVLNAIFEQSKLLQH-ATTI--------YLHHAIADFAEALASKMPGNL-KVVYF-VNSGTEANELAMLMARLSTG 180 (477)
Q Consensus 112 h~~p~v~~Av~~~l~~~~~-~~~~--------~~~~~~~~l~~~La~~~~~~~-~~v~~-~~sGseA~~~Al~~ar~~~~ 180 (477)
..+|+|.+++.+.+..... ..+. -......+.+++|+++++.+. .+|+| +.|||+|++++++-.....+
T Consensus 23 ~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~~~~ 102 (377)
T 3e77_A 23 MLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKA 102 (377)
T ss_dssp CCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGGGST
T ss_pred CCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccCCCC
Confidence 4689999999987754211 1110 012446788888999987643 46888 58999999999986543222
Q ss_pred CceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEeccc
Q 011777 181 NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETI 260 (477)
Q Consensus 181 ~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi 260 (477)
+++++....+.++... ...+. ..|......+........ .++++..++ +++++|.+..+
T Consensus 103 Gd~v~~~~~g~~~~~~-~~~a~----------~~G~~~~~~~~~~~~~~~------~~~~~~~i~----~~t~lV~~~h~ 161 (377)
T 3e77_A 103 GRCADYVVTGAWSAKA-AEEAK----------KFGTINIVHPKLGSYTKI------PDPSTWNLN----PDASYVYYCAN 161 (377)
T ss_dssp TCEEEECCCSHHHHHH-HHHHT----------TTSEEEECSCCCSSSCSC------CCGGGCCCC----TTCSCEEEESE
T ss_pred CCeEEEEECCHHHHHH-HHHHH----------HhCCceEEeccCCCcCCC------CChHHhccC----CCccEEEEeCc
Confidence 4677766666665421 11110 013322222221111111 122332222 45666776666
Q ss_pred CCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHH
Q 011777 261 QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIAN 340 (477)
Q Consensus 261 ~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~ 340 (477)
.+..|.+.| + +|+++|+++++|-+|+ +|. ..+.++.+++ ...+--|.+| ...+|+++.++++.+
T Consensus 162 et~tG~~~p----i-----i~~~~~~~~~vD~~q~-~g~---~~id~~~~~~--~~~s~~K~~g-p~G~g~l~~~~~~l~ 225 (377)
T 3e77_A 162 ETVHGVEFD----F-----IPDVKGAVLVCDMSSN-FLS---KPVDVSKFGV--IFAGAQKNVG-SAGVTVVIVRDDLLG 225 (377)
T ss_dssp ETTTTEECS----S-----CCCCTTCCEEEECTTT-TTS---SCCCGGGCSE--EEEEGGGTTS-CTTCEEEEEETTSCS
T ss_pred cCchheEch----h-----hhccCCCEEEEEcccc-cCC---CCCchhhcCE--EEEecccccC-CCccEEEEEcHHHHh
Confidence 666788776 3 4789999999999998 432 2333444442 2223339994 456889999888754
Q ss_pred hhccc-----------ccccCCC-CcHHHHHHHHHHHHhhchh----hHHHHHHHHHHHHHHHHHHHHHhCCCc-e--ee
Q 011777 341 VMAQK-----------IQFNTFG-GNPVCSAGGLAVLRVIDKE----RRQAHCADVGSHLLGRLRTLQERHDII-G--DV 401 (477)
Q Consensus 341 ~~~~~-----------~~~~t~~-~~~~~~aaa~a~l~~l~~~----~~~~~~~~~~~~l~~~L~~l~~~~~~~-~--~v 401 (477)
.+... ....+++ .|..+..+..++|+.+.++ ...++.+++.++++++|.++. ++. . +.
T Consensus 226 ~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~---g~~~~~~~~ 302 (377)
T 3e77_A 226 FALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQ---GFYVCPVEP 302 (377)
T ss_dssp CCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTST---TSEECCSCG
T ss_pred hccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcC---CceecCCCH
Confidence 33211 1122333 3455566666788877654 345566666666666665541 111 1 11
Q ss_pred ecc-ceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 402 RGR-GLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 402 ~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
..+ +..+.+.+... .++......+...+.++||.+.++-...+.+|+++...+|++|||.+++.|++++++
T Consensus 303 ~~rs~~ivsf~~~~~----~~~~~~~~~~l~~l~~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 303 QNRSKMNIPFRIGNA----KGDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp GGBCSSEEEEEESST----TCCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCcEEEEEcCCC----CCchhHHHHHHHHHHHCCcEEeCCCCcCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 112 23456665321 111112245777888999998876333356999999999999999999999998764
No 226
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.68 E-value=4.7e-15 Score=149.48 Aligned_cols=287 Identities=12% Similarity=0.090 Sum_probs=169.9
Q ss_pred CCHHHHHHHHHHHhhc---cc-cccccCChHHHHHHHHHHhhCCCCCCEEEE---eCChHHHHHHHHHHHHhccCCceEE
Q 011777 113 CHPDVLNAIFEQSKLL---QH-ATTIYLHHAIADFAEALASKMPGNLKVVYF---VNSGTEANELAMLMARLSTGNLGMI 185 (477)
Q Consensus 113 ~~p~v~~Av~~~l~~~---~~-~~~~~~~~~~~~l~~~La~~~~~~~~~v~~---~~sGseA~~~Al~~ar~~~~~~~ii 185 (477)
|+++|.+++.+..... .. ....|......+|+++++++++. +..++ ++||++|+..+++... .+++.||
T Consensus 30 n~~~vl~a~~~~~~~~~~~~~~~~~~y~~~~~~~Le~~lA~l~g~--e~alv~p~~~sGt~Ai~~al~all--~~GD~Vl 105 (409)
T 3jzl_A 30 NQAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVFKT--EAALVRPQIISGTHAISTVLFGIL--RPDDELL 105 (409)
T ss_dssp HHHHHHHHHHHTTCCGGGGCCCCTTCTTCHHHHHHHHHHHHHHTC--SEEEEETTSCSHHHHHHHHHHHHC--CTTCEEE
T ss_pred hHHHHHHHHHHhhhhhhccCCCcCCCCChhHHHHHHHHHHHHhCC--CcEEEECCCccHHHHHHHHHHHhc--CCCCEEE
Confidence 4577888887754211 11 11235566788999999999865 44555 8999999999988653 3567888
Q ss_pred EEc-cCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecc----c
Q 011777 186 ALR-NAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAET----I 260 (477)
Q Consensus 186 ~~~-~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~ep----i 260 (477)
+.+ +.|.+.... ....+. +.......|+....++....... | +++++++++ +++++|++++ +
T Consensus 106 ~~~~~~y~~~~~~-~~~~g~--~~~~l~~~G~~~~~v~~~~~g~~--d----~e~l~~ai~----~~tklV~i~~s~g~p 172 (409)
T 3jzl_A 106 YITGQPYDTLEEI-VGIRKQ--GQGSLKDFHIGYSSVPLLENGDV--D----FPRIAKKMT----PKTKMIGIQRSRGYA 172 (409)
T ss_dssp ECSSSCCTTHHHH-HTSSSS--SSSCTGGGTCEEEECCCCTTSCC--C----HHHHHHHCC----TTEEEEEEECSCTTS
T ss_pred EeCCCCcHhHHHH-Hhcccc--hhhHHHHcCCEEEEeCCCCCCCc--C----HHHHHHhcc----CCCeEEEEECCCCCC
Confidence 887 666554321 111000 00000011333333322111111 2 577888775 4689999998 8
Q ss_pred CCCCCeeeCCchhHHHHHHHHHH--hCcEEEEcCcccCccCCCCCCccccccCCCccee--eecccccCc--cceEEEEe
Q 011777 261 QGVGGAVELAPGYLKLVYDIVRK--AGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGNG--LPLGAVVT 334 (477)
Q Consensus 261 ~~~~G~~~~~~~~l~~l~~l~~~--~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~G--~pig~v~~ 334 (477)
+++.|.+.+ +++|.++|++ ||+++|+||+|..+.... ... ..+ .|++ +++|.++++ ...|++++
T Consensus 173 ~nptg~v~~----l~~I~~la~~~~~~~~livD~a~~~~~~~~-~p~---~~g--~Div~~S~sK~lgg~~~~~GG~v~~ 242 (409)
T 3jzl_A 173 DRPSFTIEK----IKEMIVFVKNINPEVIVFVDNCYGEFVEYQ-EPP---EVG--ADIIAGSLIKNPGGGLAKTGGYIAG 242 (409)
T ss_dssp SSCCCCHHH----HHHHHHHHHHHCTTCEEEEECTTCTTTSSC-CSG---GGT--CSEEEEETTSGGGTTTCSSCEEEEE
T ss_pred CCCcCcccc----HHHHHHHHHhhCCCCEEEEeCCcccccccC-Ccc---ccC--CeEEEECccccCCccCCceEEEEEe
Confidence 888886655 9999999999 999999999987442111 111 123 4655 688999974 34589999
Q ss_pred CHHHHHhhccccc----ccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhC-CCceeeeccceeEE
Q 011777 335 TPEIANVMAQKIQ----FNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERH-DIIGDVRGRGLMVG 409 (477)
Q Consensus 335 ~~~~~~~~~~~~~----~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~-~~~~~v~g~g~~~~ 409 (477)
++++++.+..... +.+.+..+..+.+++..++.+ +...++..++..++.+.|+++..+. |. ...++..+++.
T Consensus 243 ~~~li~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~g~~v~p~-~~~~~~~~i~~ 319 (409)
T 3jzl_A 243 KEALVDLCGYRLTTPGIGREAGASLYSLLEMYQGFFLA--PHVTAQAIKGARFTAAMLAEFGVEADPV-WDAPRTDLIQS 319 (409)
T ss_dssp CHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCEEESC-TTSCCSSSCCE
T ss_pred CHHHHHHHHHHhccccccccccccHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHhCCCcccCC-CCCCCccEEEE
Confidence 9999988765211 112222221123344444432 3456667777778888777652110 11 01112233667
Q ss_pred EEEeeCCCCCCccHHHHHHHHHHHHHcC
Q 011777 410 MELVTDRKEKTPAKAETAVLFEKLRELG 437 (477)
Q Consensus 410 i~~~~~~~~~~~~~~~~~~~~~~l~~~G 437 (477)
+.+. +.....++++.|+...
T Consensus 320 i~l~--------~~~~~~~~~~~L~~~~ 339 (409)
T 3jzl_A 320 VSFH--------NKEKMVAFAQAIQAAS 339 (409)
T ss_dssp EECS--------CHHHHHHHHHHHHHTS
T ss_pred EEeC--------CHHHHHHHHHHHHhcC
Confidence 7662 2345677888888774
No 227
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.67 E-value=3.4e-16 Score=156.44 Aligned_cols=323 Identities=12% Similarity=-0.001 Sum_probs=184.3
Q ss_pred CEEEeecCCcccccCCCCCHHHHHHHHHHHhhccc-cc--------cccCChHHHHHHHHHHhhCCCCC-CEEEE-eCCh
Q 011777 96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH-AT--------TIYLHHAIADFAEALASKMPGNL-KVVYF-VNSG 164 (477)
Q Consensus 96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~-~~--------~~~~~~~~~~l~~~La~~~~~~~-~~v~~-~~sG 164 (477)
+.|||..+... .+|+|++++.+.+..... .. ..-......+.++.|+++++... ++|+| ++||
T Consensus 27 ~~yl~~agpt~------~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~ 100 (386)
T 3qm2_A 27 QVFNFSSGPAM------LPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGG 100 (386)
T ss_dssp CCEECCSSSCC------CCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCT
T ss_pred cCccccCCCCC------CCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCc
Confidence 46888655443 589999999876643210 00 11123446788888999887643 46888 6999
Q ss_pred HHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCC---CCcCCCCCCCHHHHHHHHH
Q 011777 165 TEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNP---DPYHGSFGSDAARYAQDLQ 241 (477)
Q Consensus 165 seA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~le 241 (477)
|||++++++-.. .++++++....+.++... ...... . ..+..++.+ ... ... +++++
T Consensus 101 T~a~n~ai~~l~--~~gd~v~~~~~~~~~~~~-~~~a~~-----~----G~v~~v~~~~~~~G~--~~~------~~~~~ 160 (386)
T 3qm2_A 101 RGQFAGVPLNLL--GDKTTADYVDAGYWAASA-IKEAKK-----Y----CAPQIIDAKITVDGK--RAV------KPMRE 160 (386)
T ss_dssp THHHHHHHHHHC--TTCCEEEEEESSHHHHHH-HHHHTT-----T----SEEEEEECEEEETTE--EEE------CCGGG
T ss_pred hHHHHHHHHhcc--CCCCeEEEEeCCHHHHHH-HHHHHH-----h----CCeEEEecCcccCCC--CCC------chHHH
Confidence 999999998653 245667666666665421 111100 0 012222221 100 000 13344
Q ss_pred HHHhccCCCCeeEEEecccCCCCCee-eCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec
Q 011777 242 DHIDFGTSGKVAGFIAETIQGVGGAV-ELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA 320 (477)
Q Consensus 242 ~~i~~~~~~~~a~vi~epi~~~~G~~-~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s 320 (477)
..++ +++++|.+..+.+..|.+ .| +++|. +|+++++|-+|+ +|. ..+.++.++ .+..+--
T Consensus 161 ~~l~----~~t~lV~~~h~et~tG~~i~p----i~~i~-----~g~~~~vDa~qs-~g~---~pidv~~~~--~~~~s~h 221 (386)
T 3qm2_A 161 WQLS----DNAAYLHYCPNETIDGIAIDE----TPDFG-----PEVVVTADFSST-ILS---APLDVSRYG--VIYAGAQ 221 (386)
T ss_dssp CCCC----TTCSCEEECSEETTTTEECCC----CCCCC-----TTCCEEEECTTT-TTS---SCCCGGGCS--EEEEETT
T ss_pred hhcC----CCCcEEEEECCcCCcCEecCc----hhhhc-----CCCEEEEEcccc-cCC---CCCCccccC--EEEEecc
Confidence 3343 466777777777777875 54 34432 899999999997 442 233344444 2333344
Q ss_pred ccccCccceEEEEeCHHHHHhhccc-----------ccccCC-CCcHHHHHHHHHHHHhhchh----hHHHHHHHHHHHH
Q 011777 321 KGIGNGLPLGAVVTTPEIANVMAQK-----------IQFNTF-GGNPVCSAGGLAVLRVIDKE----RRQAHCADVGSHL 384 (477)
Q Consensus 321 K~lg~G~pig~v~~~~~~~~~~~~~-----------~~~~t~-~~~~~~~aaa~a~l~~l~~~----~~~~~~~~~~~~l 384 (477)
|.+| ...+|++++++++.+.+.+. .....+ +.|..+..+..++++.+.++ +..++.+++.+++
T Consensus 222 K~lG-P~G~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l 300 (386)
T 3qm2_A 222 KNIG-PAGLTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELL 300 (386)
T ss_dssp TTTC-CTTEEEEEEEGGGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred cccC-CCccEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 9994 45689999998875433211 011112 22444555666777766543 3455666667777
Q ss_pred HHHHHHHHHhCCCce---eeeccc-eeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcH
Q 011777 385 LGRLRTLQERHDIIG---DVRGRG-LMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTK 460 (477)
Q Consensus 385 ~~~L~~l~~~~~~~~---~v~g~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~ 460 (477)
+++|+++ ++.. +...++ ..+.+.+.. + ... ..+...|.++||.+..+-..-+.+|+++...+|+
T Consensus 301 ~~~l~~~----~~~~~~~~~~~rs~~iv~f~~~~------~-~~~-~~~~~~L~~~gI~~~~g~~~~~~iRiS~~~~~t~ 368 (386)
T 3qm2_A 301 YGVIDNS----DFYRNDVAQANRSRMNVPFQLAD------N-TLD-KVFLEESFAAGLHALKGHRVVGGMRASIYNAMPI 368 (386)
T ss_dssp HHHHHTC----SSEECCBCGGGBCSSEEEEEESS------G-GGH-HHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCH
T ss_pred HHHHHHC----CCcccCCCHHHcCceEEEEECCC------c-ccc-HHHHHHHHHCCCEEeCCCCCcCeEEEEcCCCCCH
Confidence 7766554 3211 111122 345555521 0 112 4566778899999877532224599999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 011777 461 DDADFLVDALDYSMSK 476 (477)
Q Consensus 461 e~i~~~l~~l~~~l~~ 476 (477)
+|||++++.|+++.++
T Consensus 369 edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 369 EGVKALTDFMIDFERR 384 (386)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998764
No 228
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.64 E-value=2.5e-14 Score=144.73 Aligned_cols=285 Identities=13% Similarity=0.074 Sum_probs=167.6
Q ss_pred CHHHHHHHHHHHhh---cccc-ccccCChHHHHHHHHHHhhCCCCCCEEEE---eCChHHHHHHHHHHHHhccCCceEEE
Q 011777 114 HPDVLNAIFEQSKL---LQHA-TTIYLHHAIADFAEALASKMPGNLKVVYF---VNSGTEANELAMLMARLSTGNLGMIA 186 (477)
Q Consensus 114 ~p~v~~Av~~~l~~---~~~~-~~~~~~~~~~~l~~~La~~~~~~~~~v~~---~~sGseA~~~Al~~ar~~~~~~~ii~ 186 (477)
.++|.+|+.+.... .... ...|......+|.++++++++. +..++ ++||++|+..++.... .+++.|++
T Consensus 45 ~~~Vl~A~~~~~~~~~~~~~~~gy~y~~~~~~~Le~~lA~l~g~--e~alv~p~~~sGt~Ai~~al~all--~pGD~Vl~ 120 (427)
T 3i16_A 45 QLKVLNAFQEERISEAHFTNSSGYGYGDIGRDSLDAVYARVFNT--ESALVRPHFVNGTHALGAALFGNL--RPGNTMLS 120 (427)
T ss_dssp HHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTC--SEEEEETTCCSHHHHHHHHHHHHC--CTTCEEEE
T ss_pred HHHHHHHHHHhchhHHhcCCCCCCCCCHHHHHHHHHHHHHHhCC--cceEEeCCCccHHHHHHHHHHHHh--CCCCEEEE
Confidence 46788877664211 1111 1124566688999999999865 34455 8999999999887553 35678888
Q ss_pred Ec-cCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecc----cC
Q 011777 187 LR-NAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAET----IQ 261 (477)
Q Consensus 187 ~~-~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~ep----i~ 261 (477)
.+ +.|++..... ....... .......|+....++.......+ .++++++++. .+++++|++++ .+
T Consensus 121 ~~~~~y~~~~~~~-g~~~~~~-~~~l~~~G~~~~~v~~~~~g~~D------~e~l~~~l~~--~~~tklV~i~~s~~~p~ 190 (427)
T 3i16_A 121 VCGEPYDTLHDVI-GITENSN-MGSLKEFGINYKQVDLKEDGKPN------LEEIEKVLKE--DESITLVHIQRSTGYGW 190 (427)
T ss_dssp SSSSCCGGGHHHH-TCSCCCS-SCCTGGGTCEEEECCCCTTSSCC------HHHHHHHHHT--CTTEEEEEEECSCCSSS
T ss_pred eCCCccHHHHHHH-hccccch-HHHHHHcCCEEEEecCccCCCcC------HHHHHHHhhC--CCCCEEEEEEcCCCCCC
Confidence 87 6776553211 1000000 00000113333333321111122 5788888862 14689999999 77
Q ss_pred CCCCeeeCCchhHHHHHHHHHH--hCcEEEEcCcccCccCCCCCCccccccCCCccee--eecccccC-c-cceEEEEeC
Q 011777 262 GVGGAVELAPGYLKLVYDIVRK--AGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-G-LPLGAVVTT 335 (477)
Q Consensus 262 ~~~G~~~~~~~~l~~l~~l~~~--~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G-~pig~v~~~ 335 (477)
++.|.+.+ +++|.++|++ ||+++|+||+|..+.... ... ..+ .|++ +++|.+++ | ...|+++++
T Consensus 191 nptg~i~d----l~~i~~la~~~~~g~~livD~a~~~~~~~~-~p~---~~g--aDiv~~S~sK~lgg~g~~~gG~i~~~ 260 (427)
T 3i16_A 191 RRALLIED----IKSIVDCVKNIRKDIICFVDNCYGEFMDTK-EPT---DVG--ADLIAGSLIKNIGGGIAPTGGYLAGT 260 (427)
T ss_dssp SCCCCHHH----HHHHHHHHHHHCTTSEEEEECTTTTTSSSS-CGG---GGT--CSEEEEETTSGGGTTTCCSCEEEEEC
T ss_pred CCcccHHH----HHHHHHHHHHhCCCCEEEEECCCccccccC-Ccc---ccC--CeEEEecCcccCCCCCCceEEEEEEC
Confidence 77776654 9999999999 999999999997543222 111 123 3555 68899997 4 456999999
Q ss_pred HHHHHhhcccccccCCCC--cH-HH-HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccc-----e
Q 011777 336 PEIANVMAQKIQFNTFGG--NP-VC-SAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRG-----L 406 (477)
Q Consensus 336 ~~~~~~~~~~~~~~t~~~--~~-~~-~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g-----~ 406 (477)
+++++.+........++. .+ +. +..++..++.+ ....++..++..++.+.|+++ +... .++.. +
T Consensus 261 ~~li~~l~~~~~~~~~g~~~~~~~~~a~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~----g~~V-~p~~~~~~~~~ 333 (427)
T 3i16_A 261 KDCIEKTSYRLTVPGIGGECGSTFGVVRSMYQGLFLA--PHISMEALKGAILCSRIMELA----GFEV-MPKYDEKRSDI 333 (427)
T ss_dssp HHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHT----TCEE-ESCTTSCCSSS
T ss_pred HHHHHHHHHhcccCccCccCCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhC----CCee-cCCCCCCCccE
Confidence 999988875321111111 11 22 22333333322 345666777777777777664 3211 12222 3
Q ss_pred eEEEEEeeCCCCCCccHHHHHHHHHHHHHcC
Q 011777 407 MVGMELVTDRKEKTPAKAETAVLFEKLRELG 437 (477)
Q Consensus 407 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~G 437 (477)
++.+.+. ....+.++++.|....
T Consensus 334 i~~i~l~--------~~~~~~~f~~~l~~~~ 356 (427)
T 3i16_A 334 IQSIKFN--------DKDKLIEFCKGIQTGS 356 (427)
T ss_dssp CEEEECS--------SHHHHHHHHHHHHHTC
T ss_pred EEEEEEC--------CHHHHHHHHHHHhhcC
Confidence 6677763 2345677888888763
No 229
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.63 E-value=1.3e-14 Score=143.65 Aligned_cols=309 Identities=10% Similarity=-0.002 Sum_probs=181.5
Q ss_pred CCHHHHHHHHHHHhhccc-cccc--------cCChHHHHHHHHHHhhCCCC-CCEEEE-eCChHHHHHHHHHHHHhccCC
Q 011777 113 CHPDVLNAIFEQSKLLQH-ATTI--------YLHHAIADFAEALASKMPGN-LKVVYF-VNSGTEANELAMLMARLSTGN 181 (477)
Q Consensus 113 ~~p~v~~Av~~~l~~~~~-~~~~--------~~~~~~~~l~~~La~~~~~~-~~~v~~-~~sGseA~~~Al~~ar~~~~~ 181 (477)
.+|+|.+++.+.+..... ..+. .......+.++.|+++++.+ ..+|+| |+|||||++++++-.. ++
T Consensus 16 ~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~~---~~ 92 (361)
T 3m5u_A 16 LPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLA---LN 92 (361)
T ss_dssp CCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC---CS
T ss_pred CcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhcC---CC
Confidence 489999999987753211 0110 01245678888899998764 347887 9999999999998553 34
Q ss_pred ceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccC
Q 011777 182 LGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQ 261 (477)
Q Consensus 182 ~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~ 261 (477)
+++.....+.++.... ..... .. ..+..++.+. ...+..+ .++ + |+ +++++|.+..+.
T Consensus 93 ~~~~~i~~~~~~~~~~-~~a~~-----~G---~~v~~~~~~~--~g~~~~~----~~~-~--l~----~~t~lv~~~~~e 150 (361)
T 3m5u_A 93 GVCEYANTGVWTKKAI-KEAQI-----LG---VNVKTVASSE--ESNFDHI----PRV-E--FS----DNADYAYICSNN 150 (361)
T ss_dssp SCEEEEECSHHHHHHH-HHHHH-----TT---CCEEEEEECT--TTTSCSC----CCC-C--CC----TTSSEEEEESEE
T ss_pred CeEEEEeCCHHHHHHH-HHHHH-----cC---CceEEEeccc--CcCCCcC----Chh-h--cC----CCCCEEEEeCCC
Confidence 4443333344443211 11100 00 1223332221 1111000 122 2 33 356667765555
Q ss_pred CCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec--ccccCccceEEEEeCHHHH
Q 011777 262 GVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA--KGIGNGLPLGAVVTTPEIA 339 (477)
Q Consensus 262 ~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~~~~~~~ 339 (477)
+..|.+.+. +++ +|+++++|.+|+ +|. ..+ +..+ .|++++| |.+| ...+|+++.++++.
T Consensus 151 ~~tG~~~~~---------i~~-~~~~~~vD~~q~-~g~---~~i--d~~~--~d~~~~s~~K~~g-p~G~g~l~~~~~~~ 211 (361)
T 3m5u_A 151 TIYGTQYQN---------YPK-TKTPLIVDASSD-FFS---RKV--DFSN--IALFYGGVQKNAG-ISGLSCIFIRKDML 211 (361)
T ss_dssp TTTTEECSS---------CCC-CSSCEEEECGGG-TTS---SCC--CCTT--EEEEEEETTTTSS-CTTCEEEEEEHHHH
T ss_pred CCcceeCCc---------ccc-cCCEEEEEcccc-cCC---CCC--Cccc--CCEEEEechhccC-CCccEEEEEcHHHH
Confidence 566876552 344 499999999998 442 222 2222 4778776 9994 45689999999987
Q ss_pred Hhhcc----c--------ccccCCC-CcHHHHHHHHHHHHhhchh----hHHHHHHHHHHHHHHHHHHHHHhCC-Cce--
Q 011777 340 NVMAQ----K--------IQFNTFG-GNPVCSAGGLAVLRVIDKE----RRQAHCADVGSHLLGRLRTLQERHD-IIG-- 399 (477)
Q Consensus 340 ~~~~~----~--------~~~~t~~-~~~~~~aaa~a~l~~l~~~----~~~~~~~~~~~~l~~~L~~l~~~~~-~~~-- 399 (477)
+.+.+ . ....+++ .|..+..+..++++.+.+. +..++.+++.++++++|+++ + +..
T Consensus 212 ~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~----~g~~~~~ 287 (361)
T 3m5u_A 212 ERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLS----NGFYKGH 287 (361)
T ss_dssp HHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTS----TTSEEES
T ss_pred hhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHC----CCeeecc
Confidence 66543 0 0122333 4556666667888877554 34566666677777766554 3 211
Q ss_pred -eeecc-ceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 400 -DVRGR-GLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 400 -~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
....+ ...+.+.+... .... ..+...|.++||.+..+-..-+.+|+++...+|++|||.+++.|+++.++
T Consensus 288 ~~~~~rs~~ivsf~~~~~------~~~~-~~~~~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 288 ADKKDRSLMNVSFNIAKN------KDLE-PLFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp SCGGGBCSSEEEEEESSC------TTHH-HHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHcCCeEEEEECCCc------hhhh-HHHHHHHHHCCCEEecCCCccCeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 11112 23455555210 0112 35778888999998776322246999999999999999999999998764
No 230
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.62 E-value=2.4e-14 Score=144.92 Aligned_cols=284 Identities=11% Similarity=0.069 Sum_probs=167.3
Q ss_pred CCHHHHHHHHHHHhhccc----cccccCChHHHHHHHHHHhhCCCCCCEEEE---eCChHHHHHHHHHHHHhccCCceEE
Q 011777 113 CHPDVLNAIFEQSKLLQH----ATTIYLHHAIADFAEALASKMPGNLKVVYF---VNSGTEANELAMLMARLSTGNLGMI 185 (477)
Q Consensus 113 ~~p~v~~Av~~~l~~~~~----~~~~~~~~~~~~l~~~La~~~~~~~~~v~~---~~sGseA~~~Al~~ar~~~~~~~ii 185 (477)
++++|.+|+.+......+ ....|......+|+++++++++. +..++ ++||++|+..++... ..+++.|+
T Consensus 45 n~~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~g~~~Le~~lA~l~g~--e~alv~p~~~sGt~A~~~al~al--l~pGD~Vl 120 (427)
T 3hvy_A 45 NQLKVLKAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIFNT--ESAFVRPHFVNGTHAIGAALFGN--LRPNDTMM 120 (427)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTC--SEEEEETTCCSHHHHHHHHHHHT--CCTTCEEE
T ss_pred hHHHHHHHHHHHHHHHHhcccCcCCCCCchhHHHHHHHHHHHhCC--CceEEeCCCCcHHHHHHHHHHHh--cCCCCEEE
Confidence 457888888764322111 11234556688999999999865 44555 899999999988754 23678888
Q ss_pred EEc-cCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecc----c
Q 011777 186 ALR-NAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAET----I 260 (477)
Q Consensus 186 ~~~-~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~ep----i 260 (477)
+.+ +.|++..... ..... .+.......|+....++. ..... | .++++++++. ..++++|++++ .
T Consensus 121 ~~~~~~y~~~~~~~-g~~~~-~~~~~l~~~G~~~~~v~~-~~~~~--d----~e~l~~~i~~--~~~tklV~i~~s~gyp 189 (427)
T 3hvy_A 121 SICGMPYDTLHDII-GMDDS-KKVGSLREYGVKYKMVDL-KDGKV--D----INTVKEELKK--DDSIKLIHIQRSTGYG 189 (427)
T ss_dssp ECSSSCCGGGHHHH-TCCTT-CCSCCTGGGTCEEEECCC-BTTBC--C----HHHHHHHHHH--CTTEEEEEEESSCCSS
T ss_pred EeCCCCchhHHHHh-ccccc-hhhhHHHHcCCEEEEecC-CCCCc--C----HHHHHHHhhC--CCCCEEEEEECCCCCC
Confidence 888 7777653111 00000 000000012333333322 11111 2 5788888863 14688999999 7
Q ss_pred CCCCCeeeCCchhHHHHHHHHHH--hCcEEEEcCcccCccCCCCCCccccccCCCccee--eecccccCc--cceEEEEe
Q 011777 261 QGVGGAVELAPGYLKLVYDIVRK--AGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGNG--LPLGAVVT 334 (477)
Q Consensus 261 ~~~~G~~~~~~~~l~~l~~l~~~--~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~G--~pig~v~~ 334 (477)
+++.|.+.+ +++|.++|++ ||+++|+||+|..+.... ... ..+ .|++ |++|.++++ ...|++++
T Consensus 190 ~nptg~v~d----l~~i~~ia~~~~~g~~livD~a~~~~~~~~-~p~---~~g--aDiv~~S~sK~lgg~g~~~GG~i~~ 259 (427)
T 3hvy_A 190 WRKSLRIAE----IAEIIKSIREVNENVIVFVDNCYGEFVEEK-EPT---DVG--ADIIAGSLIKNIGGGIATTGGYIAG 259 (427)
T ss_dssp SSCCCCHHH----HHHHHHHHHHHCSSSEEEEECTTCTTTSSS-CGG---GGT--CSEEEEETTSGGGTTTCCSCEEEEE
T ss_pred CCccccHHH----HHHHHHHHHHhCCCCEEEEECCccccccCC-CCc---ccC--CeEEEECCcccccccccceEEEEEE
Confidence 777775554 9999999999 899999999987443222 111 123 3555 688999974 45689999
Q ss_pred CHHHHHhhcccccc----cCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeecc-----c
Q 011777 335 TPEIANVMAQKIQF----NTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGR-----G 405 (477)
Q Consensus 335 ~~~~~~~~~~~~~~----~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~-----g 405 (477)
++++++.+...... .+.+.++..+..++..++.+ +...++..++..++.+.|+++ +... .++. .
T Consensus 260 ~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl~~~--~~r~~~~~~~a~~la~~L~~~----g~~V-~p~~~~~~~~ 332 (427)
T 3hvy_A 260 KEEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFMA--PHVTIEAVKGAVFCARIMELA----GFDV-LPKYNDKRTD 332 (427)
T ss_dssp CHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHT----TCEE-ESCTTSCCSS
T ss_pred CHHHHHHHHHHhhcCCcccccCCCHHHHHHHHHhHhHH--HHHHHHHHHHHHHHHHHHHhC----CCee-cCCCCCCCce
Confidence 99999888653211 11112111133333344322 345666777777777777664 3211 1122 2
Q ss_pred eeEEEEEeeCCCCCCccHHHHHHHHHHHHHc
Q 011777 406 LMVGMELVTDRKEKTPAKAETAVLFEKLREL 436 (477)
Q Consensus 406 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~ 436 (477)
+++.+.+. +.....++++.|...
T Consensus 333 li~~~~l~--------~~~~~~~f~~~l~~~ 355 (427)
T 3hvy_A 333 IIQAIKFN--------DEKKLIDFIKGIQTA 355 (427)
T ss_dssp SEEEEECS--------SHHHHHHHHHHHHHT
T ss_pred EEEEEeCC--------CHHHHHHHHHHhccc
Confidence 36666662 234566788888765
No 231
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.62 E-value=2.2e-14 Score=154.06 Aligned_cols=314 Identities=11% Similarity=-0.007 Sum_probs=175.5
Q ss_pred CChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCC
Q 011777 136 LHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGE 215 (477)
Q Consensus 136 ~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~ 215 (477)
......++.+.++++++.+ ..++++||+++||.+++.... .+++.||+.+++|+....+.+...+
T Consensus 171 ~~~~i~e~e~~lA~~~gae-~~i~v~nGtt~an~~ai~al~--~pGD~VLv~~~~H~S~~~~~~~l~G------------ 235 (730)
T 1c4k_A 171 HEGPAVAAEKHAARVYNAD-KTYFVLGGSSNANNTVTSALV--SNGDLVLFDRNNHKSVYNSALAMAG------------ 235 (730)
T ss_dssp TBTHHHHHHHHHHHHTTCS-EEEEESSHHHHHHHHHHHHHC--CTTCEEEEETTCCHHHHHHHTTTTC------------
T ss_pred ChHHHHHHHHHHHHHHCCC-cEEEECCHHHHHHHHHHHHhc--CCCCEEEEcCCchHHHHHHHHHHCC------------
Confidence 3456789999999999764 346666766799999988653 3567888888887655443122222
Q ss_pred eeeecCCCCcCCCCC----CCHHHH-HHHHHHHHhcc------CCCC-eeEEEecccCCCCCeeeCCchhHHHHHHHHHH
Q 011777 216 IHHVVNPDPYHGSFG----SDAARY-AQDLQDHIDFG------TSGK-VAGFIAETIQGVGGAVELAPGYLKLVYDIVRK 283 (477)
Q Consensus 216 ~~~~~~~~~~~~~~~----~~~~~~-~~~le~~i~~~------~~~~-~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~ 283 (477)
...+..+... ..++ .|.... .+.|+++++.. .... ..+++++|+ ..|.+.+ +++|.++|++
T Consensus 236 a~~v~v~~~~-~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn--~~G~v~d----l~~I~~la~~ 308 (730)
T 1c4k_A 236 GRPVYLQTNR-NPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGT--YDGTIYN----AHEVVKRIGH 308 (730)
T ss_dssp CEEEEECEEE-CTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBC--TTSEEEC----HHHHHHHHGG
T ss_pred CEEEEEeCCc-cccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCC--CCCeecC----HHHHHHHHHH
Confidence 1111111000 0111 011000 12337777621 1011 234555553 4687776 9999999999
Q ss_pred hCcEEEEcCcccC-ccCCCC----CCccccccCCC-cc-ee--eecccccCccce-EEEEeCHHHH---------Hhhcc
Q 011777 284 AGGVCIADEVQTG-FGRTGS----HYWGFETQGVI-PD-IV--TMAKGIGNGLPL-GAVVTTPEIA---------NVMAQ 344 (477)
Q Consensus 284 ~gillI~DEv~~g-fgr~G~----~~~~~~~~gv~-pD-iv--t~sK~lg~G~pi-g~v~~~~~~~---------~~~~~ 344 (477)
||+++|+||+|.+ ++..+. .....+.++.. ++ ++ +++|++++ ++. |+++.+++.. ..+..
T Consensus 309 ~g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g-~~~gg~I~v~~~~l~g~~~~i~~~~~~~ 387 (730)
T 1c4k_A 309 LCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAG-FSQTSQIHKKDSHIKGQLRYCDHKHFNN 387 (730)
T ss_dssp GBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSC-CTTCEEEEEECGGGTTSTTCCCHHHHHH
T ss_pred cCCeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCC-CCCEEEEEecchhhcCcccccCHHHHHH
Confidence 9999999999863 222110 01111123432 22 44 56799764 443 5554443321 11111
Q ss_pred c-ccccCCCCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHH-HHHhCCCcee-e-----------------
Q 011777 345 K-IQFNTFGGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRT-LQERHDIIGD-V----------------- 401 (477)
Q Consensus 345 ~-~~~~t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~-l~~~~~~~~~-v----------------- 401 (477)
. ....+.+.++..+++..++++.+.. +++.++..++.++++++|++ +. ....... .
T Consensus 388 ~~~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~-g~~v~~p~~~~~~~~~~~~~~~~~~~ 466 (730)
T 1c4k_A 388 SFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGS-MFRPFVPPVVNGKKWEDGDTEDMANN 466 (730)
T ss_dssp HHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTC-SSEESSCSEETTEEGGGSCHHHHTTC
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCC-CeEEcccccccccccccccccccccc
Confidence 1 1122344566777776677776654 45677888888888888876 21 1110000 0
Q ss_pred ---------------ec--cce-eE---EEEEeeCC----CC-CCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCC
Q 011777 402 ---------------RG--RGL-MV---GMELVTDR----KE-KTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPP 455 (477)
Q Consensus 402 ---------------~g--~g~-~~---~i~~~~~~----~~-~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~ 455 (477)
.+ .+. ++ -+.+..+. .. ....+.....+.+.|+++||.+...+ .+.+|++++
T Consensus 467 ~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~~--~~~ir~~~s 544 (730)
T 1c4k_A 467 IDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSD--LNSILFLMT 544 (730)
T ss_dssp GGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEEC--SSEEEEECC
T ss_pred chhhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEECC--CCeEEEEeC
Confidence 00 111 11 01222110 00 00011224678889999999987654 578999999
Q ss_pred CCCcHHHHHHHHHHHHHHHh
Q 011777 456 MCFTKDDADFLVDALDYSMS 475 (477)
Q Consensus 456 ~~~t~e~i~~~l~~l~~~l~ 475 (477)
..+|+++++.++++|.++.+
T Consensus 545 ~g~t~e~i~~Ll~aL~~i~~ 564 (730)
T 1c4k_A 545 PAETPAKMNNLITQLLQLQR 564 (730)
T ss_dssp TTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999988764
No 232
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.59 E-value=1.4e-13 Score=149.05 Aligned_cols=310 Identities=14% Similarity=0.068 Sum_probs=179.1
Q ss_pred hHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCee
Q 011777 138 HAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIH 217 (477)
Q Consensus 138 ~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~ 217 (477)
....++.+.+++.++.+ +.++++||+++||.+++.... .+++.|++.+++|+....+.... + ..
T Consensus 205 g~v~~~ee~la~l~G~d-~~i~~~~Gtt~a~~~~i~al~--~~GD~Vlv~~~~h~s~~~~~~~~-G------------~~ 268 (755)
T 2vyc_A 205 GAFGESEKYAARVFGAD-RSWSVVVGTSGSNRTIMQACM--TDNDVVVVDRNCHKSIEQGLMLT-G------------AK 268 (755)
T ss_dssp HHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHHC--CTTCEEEEESSCCHHHHHHHHHH-C------------CE
T ss_pred cHHHHHHHHHHHHhCCC-ceEEECCcHHHHHHHHHHHhc--CCCCEEEECCCchHHHHHHHHHc-C------------CE
Confidence 34667788888887653 456777777899999988653 36678999888876654442222 1 11
Q ss_pred eecCCCCcCCCCC----CC-HHHHHHHHHHHHhccC------CCCe-eEEEecccCCCCCeeeCCchhHHHHHHHHHHhC
Q 011777 218 HVVNPDPYHGSFG----SD-AARYAQDLQDHIDFGT------SGKV-AGFIAETIQGVGGAVELAPGYLKLVYDIVRKAG 285 (477)
Q Consensus 218 ~~~~~~~~~~~~~----~~-~~~~~~~le~~i~~~~------~~~~-a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g 285 (477)
.+.++... ..++ .+ .....++|+++++... ..++ .+++++| +..|.+.+ +++|.++|++||
T Consensus 269 ~v~v~~~~-~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p--n~~G~v~d----l~~I~~ia~~~~ 341 (755)
T 2vyc_A 269 PVYMVPSR-NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC--TYDGVCYN----AKEAQDLLEKTS 341 (755)
T ss_dssp EEEECCCB-CTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS--CTTSEEEC----HHHHHHHHTTTC
T ss_pred EEEEeCCC-CccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC--CCCceecC----HHHHHHHHHHcC
Confidence 11111110 0011 00 0001578888886311 1112 4566666 35687776 999999999999
Q ss_pred cEEEEcCcccCccCCCCC---CccccccC--CC---cc---eeeecccccCccc-eEEEEeCHH--HH--Hhhccc-ccc
Q 011777 286 GVCIADEVQTGFGRTGSH---YWGFETQG--VI---PD---IVTMAKGIGNGLP-LGAVVTTPE--IA--NVMAQK-IQF 348 (477)
Q Consensus 286 illI~DEv~~gfgr~G~~---~~~~~~~g--v~---pD---ivt~sK~lg~G~p-ig~v~~~~~--~~--~~~~~~-~~~ 348 (477)
+++|+||+|.+.-..+.. ...+ .+ .. +. +.+++|+++| ++ .|+++++++ .. ..+... ...
T Consensus 342 ~~livDeA~~~~~~~~~~~~~~~~~--~g~~aD~~~~~~iv~~S~hK~L~g-~~~g~~i~~~~~~~~i~~~~~~~~~~~~ 418 (755)
T 2vyc_A 342 DRLHFDEAWYGYARFNPIYADHYAM--RGEPGDHNGPTVFATHSTHKLLNA-LSQASYIHVREGRGAINFSRFNQAYMMH 418 (755)
T ss_dssp SEEEEECTTCTTGGGCGGGTTSSSS--CSCCCCCSSBEEEEEEETTTSSSC-CTTCEEEEEECCBTCCCHHHHHHHHHHT
T ss_pred CEEEEECcCchhcccCcccCCcchh--cCCcCCccCCCeEEEECccccccC-cCCeeeeeecCcccccCHHHHHHHHHHh
Confidence 999999999743111101 1111 22 11 11 2357899764 33 566766543 11 112111 122
Q ss_pred cCCCCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHh--------CCCc--eeeec------------
Q 011777 349 NTFGGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQER--------HDII--GDVRG------------ 403 (477)
Q Consensus 349 ~t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~--------~~~~--~~v~g------------ 403 (477)
.+.+.|.+.+++..++++.+.. +++.++..++.++++++|+++..+ .... ..+.+
T Consensus 419 ~s~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (755)
T 2vyc_A 419 ATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADA 498 (755)
T ss_dssp SCSSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGS
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccc
Confidence 3345677777777788887754 357888999999999999887431 1000 00100
Q ss_pred ---------------------------cc------eeEEEEEeeCCCCC--CccHHHHHHHHHHHHHcCceeeccCCCCC
Q 011777 404 ---------------------------RG------LMVGMELVTDRKEK--TPAKAETAVLFEKLRELGVLVGKGGLHGN 448 (477)
Q Consensus 404 ---------------------------~g------~~~~i~~~~~~~~~--~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~ 448 (477)
.| ..+.+.......+. ...+.....+.+.|.++||.+...+ .+
T Consensus 499 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~~gI~~e~~~--~~ 576 (755)
T 2vyc_A 499 PTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRTT--DF 576 (755)
T ss_dssp CHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHTTTCCCSEEC--SS
T ss_pred cchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHHCCCEEeecC--CC
Confidence 11 11122221000000 0001123567788888999887653 57
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777 449 VFRIKPPMCFTKDDADFLVDALDYSMS 475 (477)
Q Consensus 449 ~iRi~p~~~~t~e~i~~~l~~l~~~l~ 475 (477)
.+|+.++...|+++++.++++|.++.+
T Consensus 577 ~v~~~~~~g~t~~~~~~l~~al~~~~~ 603 (755)
T 2vyc_A 577 QIMFLFSMGVTRGKWGTLVNTLCSFKR 603 (755)
T ss_dssp EEEEECCTTCCTTTTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 899999999999999999999987753
No 233
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.39 E-value=3.4e-11 Score=128.33 Aligned_cols=312 Identities=12% Similarity=0.095 Sum_probs=177.4
Q ss_pred ChHHHHHHHHHHhhCCCCCCEEEEeCCh-HHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCC
Q 011777 137 HHAIADFAEALASKMPGNLKVVYFVNSG-TEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGE 215 (477)
Q Consensus 137 ~~~~~~l~~~La~~~~~~~~~v~~~~sG-seA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~ 215 (477)
.....++.++++++++. +..+|+.+| +.||.+++.... .+++.||+.+++|.....+....+..+.+....
T Consensus 194 ~g~i~eaE~~lA~~fGa--~~a~~v~nGts~An~~ai~al~--~pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~~~---- 265 (715)
T 3n75_A 194 SGPHKEAEQYIARVFNA--DRSYMVTNGTSTANKIVGMYSA--PAGSTILIDRNCHKSLTHLMMMSDVTPIYFRPT---- 265 (715)
T ss_dssp BTHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHHC--CTTCEEEEESSCCHHHHHHHHHSCCEEEEECCC----
T ss_pred cHHHHHHHHHHHHHhCC--CCceEECcHHHHHHHHHHHHhC--CCCCEEEECCCccHHHHHHHHHcCCEEEEEecc----
Confidence 45578999999999965 555555555 699988887553 367788888877765544432222211111000
Q ss_pred eeeecCCCCcCCCCCCCHHH-HHHHHHHHHhccCCCC--eeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcC
Q 011777 216 IHHVVNPDPYHGSFGSDAAR-YAQDLQDHIDFGTSGK--VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADE 292 (477)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~-~~~~le~~i~~~~~~~--~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DE 292 (477)
.+.+....+.+... ..++|+++++.....+ .++|+++| +..|.+.+ +++|.++|++++ +|+||
T Consensus 266 ------~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p--n~~G~v~d----l~~I~ela~~~~--livDE 331 (715)
T 3n75_A 266 ------RNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS--TYDGLLYN----TDFIKKTLDVKS--IHFDS 331 (715)
T ss_dssp ------BCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS--CTTSEEEC----HHHHHHHCCCSE--EEEEC
T ss_pred ------ccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC--CCCCccCC----HHHHHHHhCcCc--EEEcc
Confidence 00010000000000 1588998887421111 14666677 56787777 899999998774 79999
Q ss_pred cccCc-cCCCC-C-CccccccCCCccee-----eecccccCccceEEEEeCHHHH-Hhhcc-cccccCCCCcHHHHHHHH
Q 011777 293 VQTGF-GRTGS-H-YWGFETQGVIPDIV-----TMAKGIGNGLPLGAVVTTPEIA-NVMAQ-KIQFNTFGGNPVCSAGGL 362 (477)
Q Consensus 293 v~~gf-gr~G~-~-~~~~~~~gv~pDiv-----t~sK~lg~G~pig~v~~~~~~~-~~~~~-~~~~~t~~~~~~~~aaa~ 362 (477)
+|.+. ...+. . ..+.. .+..+|++ +++|++++--.-|++.++.++. +.+.. .....|.+.+++.+++..
T Consensus 332 AH~~~~~f~~~~~~~~al~-~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~Asld 410 (715)
T 3n75_A 332 AWVPYTNFSPIYEGKCGMS-GGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTE 410 (715)
T ss_dssp TTCTTGGGSGGGTTSSTTS-SSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHHH
T ss_pred ccccccccCCccccccccc-cCcCCCEEEEEEecccccccCCCCeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHHH
Confidence 99743 12110 0 11111 12225643 5789987511237777765421 11211 122345567888888888
Q ss_pred HHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCCC-----ce--eeec-------------------cce-eE---E
Q 011777 363 AVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERHDI-----IG--DVRG-------------------RGL-MV---G 409 (477)
Q Consensus 363 a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~-----~~--~v~g-------------------~g~-~~---~ 409 (477)
++++.++. +++.+++.++.++++++|+++....+. .. .+.+ .+. ++ -
T Consensus 411 aA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~K 490 (715)
T 3n75_A 411 TAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIK 490 (715)
T ss_dssp HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECTTE
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCCeE
Confidence 99988863 468899999999999999988542110 00 0000 000 00 0
Q ss_pred EEEeeCCCC--C--CccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777 410 MELVTDRKE--K--TPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYS 473 (477)
Q Consensus 410 i~~~~~~~~--~--~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~ 473 (477)
+.+...... . ...+.....+.+.|.++||.+.... .+.+-+..+...|+++++.++++|.+.
T Consensus 491 l~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d--~~~vl~l~s~g~~~~~~~~L~~aL~~~ 556 (715)
T 3n75_A 491 VTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTG--PYNLLFLFSIGIDKTKALSLLRALTDF 556 (715)
T ss_dssp EEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEE--TTEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecC--CCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 111111000 0 0001224467778888999987654 455667778888999999999998765
No 234
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.37 E-value=7.2e-11 Score=117.54 Aligned_cols=291 Identities=12% Similarity=0.036 Sum_probs=170.6
Q ss_pred CEEEEeCChHHHHHHHHHHHHhc--cCCceEEEEccCccCCcccccccccC-CCCCCCCCCCCeeeecCCCCcCCCCCCC
Q 011777 156 KVVYFVNSGTEANELAMLMARLS--TGNLGMIALRNAYHGGSSGTIGLTAL-NTWKYPIPQGEIHHVVNPDPYHGSFGSD 232 (477)
Q Consensus 156 ~~v~~~~sGseA~~~Al~~ar~~--~~~~~ii~~~~~yhG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (477)
...|++|++|-++.+++..+... .+.++||+.+ .-|-+...++.+.+. +.|..+.. .++ .++-|
T Consensus 135 ~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpR-n~HKSv~kAliL~Gl~Pv~V~p~~--------d~~----~~~id 201 (501)
T 3hl2_A 135 ANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPR-IDQKSCFKSMITAGFEPVVIENVL--------EGD----ELRTD 201 (501)
T ss_dssp CEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEEC-CCCHHHHHHHHHTTCEEEEECEEE--------ETT----EEEEC
T ss_pred CcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEec-chHHHHHHHHHHcCCeEEEEeeee--------ccc----ccCCC
Confidence 46888888887777777655432 1346777744 455554544444432 11111100 000 11112
Q ss_pred HHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCC
Q 011777 233 AARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGV 312 (477)
Q Consensus 233 ~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv 312 (477)
+++++++|+....+.+++|+..|....++...+ +++|.++|++||+++|+||+|.+.-... ..+..+.+..
T Consensus 202 ----~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~dd----I~eIaeIch~~gIpllVDeAhGah~~~~-~~lp~sA~~~ 272 (501)
T 3hl2_A 202 ----LKAVEAKVQELGPDCILCIHSTTSCFAPRVPDR----LEELAVICANYDIPHIVNNAYGVQSSKC-MHLIQQGARV 272 (501)
T ss_dssp ----HHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTCTTCHHH-HHHHHHHHHH
T ss_pred ----HHHHHHHHHhcCCCcEEEEEecCCCCCCccccc----HHHHHHHHHHcCCeEEEeCcchhhhhhh-hhhHHHHHhc
Confidence 588999987543467778877765443444444 9999999999999999999986432111 0000111222
Q ss_pred -Ccceeeec--ccccCccce-EEEE-e-CHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHH
Q 011777 313 -IPDIVTMA--KGIGNGLPL-GAVV-T-TPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSH 383 (477)
Q Consensus 313 -~pDivt~s--K~lg~G~pi-g~v~-~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~ 383 (477)
..|+++.| |.+-. |+ |+++ . ++++.+.+.. .+.++.++.|.. ..+.++..+-. .+++++..++.++
T Consensus 273 GrAD~vVqS~HK~llv--pIGG~ii~~~d~e~l~~~~~-~yPGr~S~Spsl--dl~~tLL~lGr~Gy~~ll~e~~ela~~ 347 (501)
T 3hl2_A 273 GRIDAFVQSLDKNFMV--PVGGAIIAGFNDSFIQEISK-MYPGRASASPSL--DVLITLLSLGSNGYKKLLKERKEMFSY 347 (501)
T ss_dssp SCCCEEEEEHHHHHCC--CSSCEEEEESCHHHHHHHHH-TSCSCBCSHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEeccccccee--ecCceEEEeCCHHHHHHHHH-hCCCCCCCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888877 66532 33 3343 3 5667666543 233444554433 22233333322 5678888889999
Q ss_pred HHHHHHHHHHhCC-CceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCce----eecc-------------CC
Q 011777 384 LLGRLRTLQERHD-IIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVL----VGKG-------------GL 445 (477)
Q Consensus 384 l~~~L~~l~~~~~-~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~----v~~~-------------~~ 445 (477)
|+++|+++...++ .+...+....-+++.+..... ........+...|..++|- +.++ |.
T Consensus 348 L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~---~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~g~ 424 (501)
T 3hl2_A 348 LSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDE---HRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMS 424 (501)
T ss_dssp HHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCT---TTSCHHHHHHHHHHHTTCCSCEEECTTCCEEETTEEESSTTT
T ss_pred HHHHHHHHHHhcChhhcCCCCCceeEEEecccccc---cccccHHHHHHHHHhcCCCcceeecCCCceEECCeeecCccc
Confidence 9999999988775 333444344444565533211 1112345677788887663 2222 11
Q ss_pred -----CCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777 446 -----HGNVFRIKPPMCFTKDDADFLVDALDYSMSK 476 (477)
Q Consensus 446 -----~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 476 (477)
...++-+.....++++|||.++++|++++.+
T Consensus 425 h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~ 460 (501)
T 3hl2_A 425 HTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKA 460 (501)
T ss_dssp TSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 1247888888889999999999999999864
No 235
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.30 E-value=1.6e-10 Score=116.39 Aligned_cols=308 Identities=10% Similarity=-0.015 Sum_probs=166.9
Q ss_pred HHHHHHHHhhCCCC-CCEEEEeCChH-HHHHHHHHHHHhcc-CCceEEEEccCccCCcccccccccCCCCCCCCCCCCee
Q 011777 141 ADFAEALASKMPGN-LKVVYFVNSGT-EANELAMLMARLST-GNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIH 217 (477)
Q Consensus 141 ~~l~~~La~~~~~~-~~~v~~~~sGs-eA~~~Al~~ar~~~-~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~ 217 (477)
..+..++.++++.+ ....+++|++| .++..++..+|... +.+.||+.+. -|-+...++.+.+...... .
T Consensus 101 ~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~-aHkSv~kAl~l~Gl~p~~v-------~ 172 (450)
T 3bc8_A 101 NSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRI-DQKSCFKSMVTAGFEPVVI-------E 172 (450)
T ss_dssp HHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECC-CCHHHHHHHHHTTCEEEEE-------C
T ss_pred HHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECC-cHHHHHHHHHHcCCeeEEE-------E
Confidence 44555555554322 24568999998 66666666677532 2456666655 7777666666554321110 0
Q ss_pred eecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCc
Q 011777 218 HVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGF 297 (477)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gf 297 (477)
+.++......+ .+.|+++|+....+.+++|+..|....+|.+.+ +++|.++|++||+++++||+|.+.
T Consensus 173 --~~~~~~~~~id------~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~dd----l~~Ia~ia~~~gi~l~VD~A~G~~ 240 (450)
T 3bc8_A 173 --NVLEGDELRTD------LKAVEAKIQELGPEHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQ 240 (450)
T ss_dssp --CEEETTEEECC------HHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTT
T ss_pred --eeecCccCCcC------HHHHHHHHHhcCCCCEEEEEEECCcCCCceecC----HHHHHHHHHHCCCeEEEECCCchh
Confidence 00000011122 588999997543346788888886655555556 999999999999999999998753
Q ss_pred cCCCCCCccccccCC-Ccceeeec--ccccCccceEEEEe-CHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch---
Q 011777 298 GRTGSHYWGFETQGV-IPDIVTMA--KGIGNGLPLGAVVT-TPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK--- 370 (477)
Q Consensus 298 gr~G~~~~~~~~~gv-~pDivt~s--K~lg~G~pig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~--- 370 (477)
-+.. ..+.-+.... ..|++++| |.+.....-+.+.. +++..+.+... +.++.+.+|. . ....++..+..
T Consensus 241 ~~~~-~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~~-~~g~~s~Sps-L-~l~~~l~~~G~~g~ 316 (450)
T 3bc8_A 241 SSKC-MHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKM-YPGRASASPS-L-DVLITLLSLGCSGY 316 (450)
T ss_dssp CHHH-HHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHH-SCSCBCSHHH-H-HHHHHHHHHHHHHH
T ss_pred hhhh-HhHHHHHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHHHHH-hhcCCcccHH-H-HHHHHHHHHHHHHH
Confidence 2111 0000011111 46888776 87775455577765 55555554332 1122223332 1 12222222222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCC-ceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCc---eee-----
Q 011777 371 ERRQAHCADVGSHLLGRLRTLQERHDI-IGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGV---LVG----- 441 (477)
Q Consensus 371 ~~~~~~~~~~~~~l~~~L~~l~~~~~~-~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv---~v~----- 441 (477)
++++++..++.++++++|+++..+++. +......+.-..+.+..-. .. ......++.-.+...|+ -+.
T Consensus 317 ~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~-~~--~~~D~tkl~i~~~~~g~sG~~v~~~~~~ 393 (450)
T 3bc8_A 317 RKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTID-GH--HDKAVTQLGSMLFTRQVSGARAVPLGNV 393 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTS-SS--SSCHHHHHHHHHHHTTCCSCEEECSCCE
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeeccccc-cc--ccCCCceeEEEecCCCCccceeeecccc
Confidence 234445577788999999988766652 2121111111122221100 00 01122344445555542 111
Q ss_pred --------c--c----CCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777 442 --------K--G----GLHGNVFRIKPPMCFTKDDADFLVDALDYSMS 475 (477)
Q Consensus 442 --------~--~----~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~ 475 (477)
. + -....++-+..+...+++|+++++++|+++++
T Consensus 394 ~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~ 441 (450)
T 3bc8_A 394 QTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLN 441 (450)
T ss_dssp EEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 0 0 11235677777888999999999999998764
No 236
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=98.71 E-value=5.6e-07 Score=89.38 Aligned_cols=327 Identities=14% Similarity=0.064 Sum_probs=166.0
Q ss_pred CCHHHHHHHHHHHhh-cc--ccccccC--C---hHHHHHHH-HHHhhCCCCCCEE---EEeCChHHHHHHHHHHHHhccC
Q 011777 113 CHPDVLNAIFEQSKL-LQ--HATTIYL--H---HAIADFAE-ALASKMPGNLKVV---YFVNSGTEANELAMLMARLSTG 180 (477)
Q Consensus 113 ~~p~v~~Av~~~l~~-~~--~~~~~~~--~---~~~~~l~~-~La~~~~~~~~~v---~~~~sGseA~~~Al~~ar~~~~ 180 (477)
..|.|.+|+-..+.+ +. +...+|. . +..+.|+. +..++++.+.... +=..||+.||.++...... +
T Consensus 66 ~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~All~--P 143 (490)
T 3ou5_A 66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQ--P 143 (490)
T ss_dssp CCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC---
T ss_pred CCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHHcC--C
Confidence 578888887554432 11 1111111 1 22344443 4455666554311 2345999999988875543 6
Q ss_pred CceEEEEccCccCCcccc-cccccCCCCCCCCCCCCeeeecCCCC-cCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEec
Q 011777 181 NLGMIALRNAYHGGSSGT-IGLTALNTWKYPIPQGEIHHVVNPDP-YHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAE 258 (477)
Q Consensus 181 ~~~ii~~~~~yhG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~e 258 (477)
+++|+.++-..-|+.... ..... +.......+..++++.. .....+ .+.++++... .+++.||+-
T Consensus 144 GD~ilg~~l~~GGHltHg~~~~~~----~v~~sg~~~~~~~Y~vd~~t~~ID------yd~~~~~A~~---~kPklIi~G 210 (490)
T 3ou5_A 144 HDRIMGLDLPDGGHLTHGYMSDVK----RISATSIFFESMPYKLNPKTGLID------YNQLALTARL---FRPRLIIAG 210 (490)
T ss_dssp CCCEECBC--------------------------------CBCEETTTTEEC------HHHHHHHHHH---HCCSEEEEC
T ss_pred CCEEEecccCCCCcccccccCCCc----ccccccccccccccccCCCCCccc------HHHHHHHHhh---cCCCeEEEC
Confidence 778887654432221110 00000 00000000111111100 001111 4777777663 356778775
Q ss_pred ccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc-CccCCCCCCccccccCCCcceeeec--ccccCccceEEEEeC
Q 011777 259 TIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT-GFGRTGSHYWGFETQGVIPDIVTMA--KGIGNGLPLGAVVTT 335 (477)
Q Consensus 259 pi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-gfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~~~ 335 (477)
... -+-+-.+++++++|++.|++|++|-.+. |+--.|...-.++ ..|+||.+ |.|.| .|-|.++++
T Consensus 211 ~Sa------Y~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~----~ADvVTtTTHKTLrG-PrGG~Il~~ 279 (490)
T 3ou5_A 211 TSA------YARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK----HADIVTTTTHKTLRG-ARSGLIFYR 279 (490)
T ss_dssp CSS------CCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG----TCSEEEEESSSTTCS-CSCEEEEEE
T ss_pred Ccc------CccccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCccc----cceEEeccccccccC-CCceEEEec
Confidence 422 2222337999999999999999998854 4432331111122 25888765 99875 355888876
Q ss_pred H---------------HHHHhhcccccccCCCCcHHHHHHHHHH-HHh-hch--hhHHHHHHHHHHHHHHHHHHHHHhCC
Q 011777 336 P---------------EIANVMAQKIQFNTFGGNPVCSAGGLAV-LRV-IDK--ERRQAHCADVGSHLLGRLRTLQERHD 396 (477)
Q Consensus 336 ~---------------~~~~~~~~~~~~~t~~~~~~~~aaa~a~-l~~-l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~ 396 (477)
+ ++.+.+......+..+++.+-..|+.++ +.. +.. .+..+++.++.+.|.+.|.+. .+.
T Consensus 280 ~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~--G~~ 357 (490)
T 3ou5_A 280 KGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER--GYS 357 (490)
T ss_dssp CSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT--TCE
T ss_pred cccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhC--CCe
Confidence 5 3444444433445555554444444433 433 222 346677777777787777664 233
Q ss_pred CceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC-------CCCCEEEEeCCCC----CcHHHHHH
Q 011777 397 IIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG-------LHGNVFRIKPPMC----FTKDDADF 465 (477)
Q Consensus 397 ~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------~~~~~iRi~p~~~----~t~e~i~~ 465 (477)
++..-. ...++.+++.... .......+.|.+.||.+.... ...+-|||..|.. ..++|+++
T Consensus 358 vvsGgT-dnHlvLvDl~~~g-------~tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~ 429 (490)
T 3ou5_A 358 LVSGGT-DNHLVLVDLRPKG-------LDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRR 429 (490)
T ss_dssp EGGGSC-SSSEEEEECGGGT-------CCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHH
T ss_pred eecCCC-CceEEEEeccccC-------CCHHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHH
Confidence 332111 2345566664211 113445566777899886421 1234689976654 46788988
Q ss_pred HHHHHHHHHh
Q 011777 466 LVDALDYSMS 475 (477)
Q Consensus 466 ~l~~l~~~l~ 475 (477)
+.+.|.+++.
T Consensus 430 IA~~I~~~l~ 439 (490)
T 3ou5_A 430 VVDFIDEGVN 439 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887663
No 237
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=53.88 E-value=15 Score=28.06 Aligned_cols=53 Identities=8% Similarity=0.097 Sum_probs=36.1
Q ss_pred HHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCccc
Q 011777 143 FAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSG 197 (477)
Q Consensus 143 l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~ 197 (477)
+.+.+.+.++.+..-|++|.+|..+..++-.+... |-..|..++|++.++...
T Consensus 41 l~~~~~~~l~~~~~ivvyc~~g~rs~~a~~~L~~~--G~~~v~~l~GG~~~W~~~ 93 (106)
T 3hix_A 41 LVDRASSSLEKSRDIYVYGAGDEQTSQAVNLLRSA--GFEHVSELKGGLAAWKAI 93 (106)
T ss_dssp HHHHHHHHSCTTSCEEEECSSHHHHHHHHHHHHHT--TCSCEEECTTHHHHHHHT
T ss_pred HHHHHHhcCCCCCeEEEEECCCChHHHHHHHHHHc--CCcCEEEecCCHHHHHHC
Confidence 44444444555556788999998887776665443 666788889988877543
No 238
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=49.81 E-value=16 Score=31.84 Aligned_cols=37 Identities=24% Similarity=0.213 Sum_probs=29.0
Q ss_pred CCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEE
Q 011777 250 GKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIA 290 (477)
Q Consensus 250 ~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~ 290 (477)
-..++||||-+.+..|.... +.++.+++++||+.+|.
T Consensus 158 l~Pa~vicEi~~~~dG~mar----~~~l~~fA~~h~l~iit 194 (204)
T 1tks_A 158 LQPAGVICELVRDEDGLMMR----LDDCIQFGKKHGIKIIN 194 (204)
T ss_dssp SCSBEEEEEBBCTTTCCBCB----HHHHHHHHHHHTCCEEE
T ss_pred CCceEEEEEEeECCCCCcCC----HHHHHHHHHHcCCcEEE
Confidence 45789999977455565554 88999999999998884
No 239
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=48.45 E-value=22 Score=27.12 Aligned_cols=53 Identities=8% Similarity=0.091 Sum_probs=37.0
Q ss_pred HHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcc
Q 011777 141 ADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSS 196 (477)
Q Consensus 141 ~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~ 196 (477)
.++.+.+.+ ++.+..-|++|.+|..+..++-.+... |-..|..++|++.++..
T Consensus 46 ~~l~~~~~~-l~~~~~ivvyc~~g~rs~~a~~~L~~~--G~~~v~~l~GG~~~W~~ 98 (108)
T 1gmx_A 46 DTLGAFMRD-NDFDTPVMVMCYHGNSSKGAAQYLLQQ--GYDVVYSIDGGFEAWQR 98 (108)
T ss_dssp HHHHHHHHH-SCTTSCEEEECSSSSHHHHHHHHHHHH--TCSSEEEETTHHHHHHH
T ss_pred HHHHHHHHh-cCCCCCEEEEcCCCchHHHHHHHHHHc--CCceEEEecCCHHHHHH
Confidence 445555555 444456788999998887777666544 66678889999887644
No 240
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation, SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A {Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A* 1deo_A* 1pp4_A* 3c1u_A*
Probab=47.63 E-value=25 Score=31.14 Aligned_cols=53 Identities=11% Similarity=0.095 Sum_probs=32.1
Q ss_pred HHHHHHHHhccCCCCeeEEEecccCCC---CCe-eeCCchhHHHHHHHHHHhCcEEE
Q 011777 237 AQDLQDHIDFGTSGKVAGFIAETIQGV---GGA-VELAPGYLKLVYDIVRKAGGVCI 289 (477)
Q Consensus 237 ~~~le~~i~~~~~~~~a~vi~epi~~~---~G~-~~~~~~~l~~l~~l~~~~gillI 289 (477)
.+.|+++++.........|++.|.... .|. ......|-+.++++|+++|+.+|
T Consensus 111 ~~~l~~~i~~~~~~g~~vil~tp~p~~~~~~~~~~~~~~~y~~~~~~vA~~~~v~~i 167 (233)
T 1k7c_A 111 PAYLENAAKLFTAKGAKVILSSQTPNNPWETGTFVNSPTRFVEYAELAAEVAGVEYV 167 (233)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCCCCTTTTSSCCCCCCHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCccccCCCccccchHHHHHHHHHHHHHhCCeEE
Confidence 355666665322223466777775321 232 13345677889999999998776
No 241
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=45.90 E-value=59 Score=23.24 Aligned_cols=51 Identities=14% Similarity=0.238 Sum_probs=32.6
Q ss_pred HHHHHHHHhhC-CCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCC
Q 011777 141 ADFAEALASKM-PGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGG 194 (477)
Q Consensus 141 ~~l~~~La~~~-~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~ 194 (477)
.++.+.+.+.- +.+..-|++|.+|..|..++-.+... |-..+... +++..+
T Consensus 27 ~~l~~~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~--G~~~v~~l-GG~~~w 78 (85)
T 2jtq_A 27 KEVKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEM--GYTHVENA-GGLKDI 78 (85)
T ss_dssp HHHHHHHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHT--TCSSEEEE-EETTTC
T ss_pred HHHHHHHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHc--CCCCEEec-cCHHHH
Confidence 45556666652 33345688999998888777666543 55566666 666554
No 242
>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}
Probab=45.85 E-value=1.1e+02 Score=28.11 Aligned_cols=96 Identities=9% Similarity=0.096 Sum_probs=54.4
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCH
Q 011777 154 NLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDA 233 (477)
Q Consensus 154 ~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (477)
+.+.++.+++.-+....++.++..+.+....+...-|.|-+.... +..
T Consensus 30 gV~~~v~~g~~~~~~~~~~~la~~~~~~~~~v~~~~GiHP~~~~~------------------------------~~~-- 77 (287)
T 3rcm_A 30 GVTQMLLTGTSLAVSEQALELCQQLDASGAHLFATAGVHPHDAKA------------------------------WDT-- 77 (287)
T ss_dssp TEEEEEECCCSHHHHHHHHHHHHHHCTTSSSEEEEECCCGGGGGG------------------------------CCT--
T ss_pred CCeEEEEecCCHHHHHHHHHHHHhCCCCCceEEEEEEECcCcccc------------------------------CCH--
Confidence 456777777778888888998887754222233334555431110 000
Q ss_pred HHHHHHHHHHHhccCCCCeeEEEecccCCCCCe--------eeCCchhHHHHHHHHHHhCcEEEEc
Q 011777 234 ARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGA--------VELAPGYLKLVYDIVRKAGGVCIAD 291 (477)
Q Consensus 234 ~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~--------~~~~~~~l~~l~~l~~~~gillI~D 291 (477)
..++.|+++++ .+++.+| |+.|. ...-.+.+++..++|+++|.+|++=
T Consensus 78 -~~~~~l~~l~~---~~~vvaI------GEiGLD~~~~~~~~~~Q~~~F~~ql~lA~e~~lPv~iH 133 (287)
T 3rcm_A 78 -DSERQLRLLLS---EPRVRAV------GECGLDFNRDFSPRPLQEKALEAQLTLAAQLRLPVFLH 133 (287)
T ss_dssp -THHHHHHHHHT---STTEEEE------EEEEEETTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred -HHHHHHHHHhc---CCCeEEE------EEeeeCCCcccCcHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 11466776665 2345444 22221 1112456788889999999888863
No 243
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=42.35 E-value=30 Score=30.27 Aligned_cols=36 Identities=19% Similarity=0.122 Sum_probs=27.8
Q ss_pred CCeeEEEecc--cCCCCCeeeCCchhHHHHHHHHHHhCcEEEE
Q 011777 250 GKVAGFIAET--IQGVGGAVELAPGYLKLVYDIVRKAGGVCIA 290 (477)
Q Consensus 250 ~~~a~vi~ep--i~~~~G~~~~~~~~l~~l~~l~~~~gillI~ 290 (477)
-..++||||- ++ ..|.... +.++.+++++||+.+|.
T Consensus 157 l~Pa~vicEiv~~~-~dG~mar----~~~l~~fA~~h~l~~it 194 (206)
T 3mio_A 157 LQPAGAICEIVSQK-DEGSMAH----TDELRVFADEHGLALIT 194 (206)
T ss_dssp SCSBEEEEEBBCSS-STTSBCC----HHHHHHHHHHHTCEEEE
T ss_pred CCceEEEEEEeeeC-CCCCcCC----HHHHHHHHHHcCCcEEE
Confidence 3578999998 54 4454444 78899999999999984
No 244
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=41.22 E-value=24 Score=26.98 Aligned_cols=54 Identities=9% Similarity=0.163 Sum_probs=36.3
Q ss_pred HHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccc
Q 011777 141 ADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGT 198 (477)
Q Consensus 141 ~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~ 198 (477)
.++.+.+.++ +.+..-|++|.+|.-|..++-.+... |- .+..++|++.+|....
T Consensus 43 ~~l~~~~~~l-~~~~~ivvyC~~G~rs~~aa~~L~~~--G~-~v~~l~GG~~~W~~~~ 96 (108)
T 3gk5_A 43 SELREKWKIL-ERDKKYAVICAHGNRSAAAVEFLSQL--GL-NIVDVEGGIQSWIEEG 96 (108)
T ss_dssp HHHHHHGGGS-CTTSCEEEECSSSHHHHHHHHHHHTT--TC-CEEEETTHHHHHHHTT
T ss_pred HHHHHHHHhC-CCCCeEEEEcCCCcHHHHHHHHHHHc--CC-CEEEEcCcHHHHHHcC
Confidence 3455555443 44456789999998887766655432 55 8889999998775443
No 245
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=40.93 E-value=48 Score=26.88 Aligned_cols=41 Identities=15% Similarity=0.245 Sum_probs=29.4
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcc
Q 011777 154 NLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSS 196 (477)
Q Consensus 154 ~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~ 196 (477)
+..-|++|.+|.-+..++..+... |-..|..++|++-++..
T Consensus 80 ~~~ivvyC~~G~rS~~aa~~L~~~--G~~~v~~l~GG~~~w~~ 120 (148)
T 2fsx_A 80 ERPVIFLCRSGNRSIGAAEVATEA--GITPAYNVLDGFEGHLD 120 (148)
T ss_dssp -CCEEEECSSSSTHHHHHHHHHHT--TCCSEEEETTTTTCCCC
T ss_pred CCEEEEEcCCChhHHHHHHHHHHc--CCcceEEEcCChhhhhh
Confidence 345788999998776666555443 66679999999987754
No 246
>3ij6_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structure initiative; 2.00A {Lactobacillus acidophilus}
Probab=40.33 E-value=2.2e+02 Score=26.17 Aligned_cols=50 Identities=14% Similarity=-0.007 Sum_probs=34.3
Q ss_pred HHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEc
Q 011777 236 YAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIAD 291 (477)
Q Consensus 236 ~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D 291 (477)
..++|+++++ .....+|-+.|..+ | ..+....+..+.+.|.++|+.+.+-
T Consensus 112 a~~el~r~~~---~~G~~Gv~l~~~~~--~-~~l~d~~~~p~~~~~~e~g~pv~iH 161 (312)
T 3ij6_A 112 ACKVISSIKD---DENLVGAQIFTRHL--G-KSIADKEFRPVLAQAAKLHVPLWMH 161 (312)
T ss_dssp HHHHHHHHHH---CTTEEEEEEESEET--T-EETTSTTTHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHH---hCCCceEeccCCCC--C-CCCCCccHHHHHHHHHHcCCeEEEc
Confidence 3567777765 23567777766422 3 4445556789999999999988765
No 247
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=40.30 E-value=25 Score=28.52 Aligned_cols=55 Identities=9% Similarity=0.116 Sum_probs=37.3
Q ss_pred HHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccc
Q 011777 142 DFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGT 198 (477)
Q Consensus 142 ~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~ 198 (477)
++.+.+...++.+..-|++|.+|.-|..++-.+... |-..|..++|++.+|....
T Consensus 44 ~l~~~~~~~l~~~~~ivvyC~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~W~~~g 98 (141)
T 3ilm_A 44 DLVDRASSSLEKSRDIYVYGAGDEQTSQAVNLLRSA--GFEHVSELKGGLAAWKAIG 98 (141)
T ss_dssp GHHHHHHTTSCTTSEEEEECSSHHHHHHHHHHHHHT--TCCSEEECTTHHHHHHHTT
T ss_pred HHHHHHHhcCCCCCeEEEEECCChHHHHHHHHHHHc--CCCCEEEecCHHHHHHHCC
Confidence 344455445555545788888998888776665443 6667888999998875443
No 248
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=36.79 E-value=26 Score=27.80 Aligned_cols=43 Identities=12% Similarity=0.123 Sum_probs=31.2
Q ss_pred CCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCc
Q 011777 151 MPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGS 195 (477)
Q Consensus 151 ~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~ 195 (477)
++.+..-|++|.+|.-|..++..+... |-..|..++|++.+|.
T Consensus 79 l~~~~~ivvyC~~G~rs~~aa~~L~~~--G~~~v~~l~GG~~~W~ 121 (129)
T 1tq1_A 79 FGQSDNIIVGCQSGGRSIKATTDLLHA--GFTGVKDIVGGYSAWA 121 (129)
T ss_dssp CCTTSSEEEEESSCSHHHHHHHHHHHH--HCCSEEEEECCHHHHH
T ss_pred CCCCCeEEEECCCCcHHHHHHHHHHHc--CCCCeEEeCCcHHHHH
Confidence 444456789999998888777666544 5556888889887663
No 249
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Probab=36.70 E-value=38 Score=29.87 Aligned_cols=36 Identities=17% Similarity=0.140 Sum_probs=27.8
Q ss_pred CCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEE
Q 011777 250 GKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIA 290 (477)
Q Consensus 250 ~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~ 290 (477)
-..++||||-. +..|.... +.++.+++++||+.+|.
T Consensus 166 l~Pa~vicEi~-~~dG~mar----~~~l~~fA~~h~l~~it 201 (217)
T 1g57_A 166 FKPAGVLCELT-NDDGTMAR----APECIEFANKHNMALVT 201 (217)
T ss_dssp SCSCEEEEEBB-CTTSSBCC----HHHHHHHHHHTTCEEEE
T ss_pred CCceEEEEEEe-CCCCCccC----HHHHHHHHHHcCCCEEE
Confidence 35789999976 44454444 78899999999999884
No 250
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=36.67 E-value=1.9e+02 Score=25.47 Aligned_cols=37 Identities=16% Similarity=0.117 Sum_probs=22.1
Q ss_pred EEEecccC-CCCCeeeCCchhHHHHHHHHHHh-CcEEEEc
Q 011777 254 GFIAETIQ-GVGGAVELAPGYLKLVYDIVRKA-GGVCIAD 291 (477)
Q Consensus 254 ~vi~epi~-~~~G~~~~~~~~l~~l~~l~~~~-gillI~D 291 (477)
.|++.+++ |-+| ....+.-+++|.++.+.. +..+.+|
T Consensus 137 ~Vl~msv~pGf~G-q~f~~~~l~ki~~lr~~~~~~~I~Vd 175 (228)
T 3ovp_A 137 MALVMTVEPGFGG-QKFMEDMMPKVHWLRTQFPSLDIEVD 175 (228)
T ss_dssp EEEEESSCTTTCS-CCCCGGGHHHHHHHHHHCTTCEEEEE
T ss_pred eEEEeeecCCCCC-cccCHHHHHHHHHHHHhcCCCCEEEe
Confidence 45555543 4455 445566788888877654 3555555
No 251
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=34.65 E-value=37 Score=30.11 Aligned_cols=36 Identities=11% Similarity=-0.046 Sum_probs=28.5
Q ss_pred CCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEE
Q 011777 250 GKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIA 290 (477)
Q Consensus 250 ~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~ 290 (477)
-..++||||=++-. |.... +.++.+++++||+.+|.
T Consensus 177 l~Pa~VicEi~~dd-G~mar----~~~l~~fA~~h~l~~it 212 (227)
T 1snn_A 177 LVPITTICEMMGDD-GNAMS----KNETKRYAEKHNLIYLS 212 (227)
T ss_dssp SCSEEEEEEEBCTT-SSBCC----HHHHHHHHHHHTCCEEE
T ss_pred CCceEEEEEEeCCC-CCcCC----HHHHHHHHHHcCCcEEE
Confidence 46799999987654 54444 78899999999999984
No 252
>3qvs_A MIPS, MYO-inositol-1-phosphate synthase (INO1); NAD binding rossmann fold, L-MYO-inositol 1-phosphate syntha isomerase; HET: NAD PG4; 1.70A {Archaeoglobus fulgidus} PDB: 1u1i_A* 3qvt_A* 3qvw_A* 3qvx_A* 3qw2_A*
Probab=33.40 E-value=1.2e+02 Score=29.16 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhCcEEEEcCccc
Q 011777 274 LKLVYDIVRKAGGVCIADEVQT 295 (477)
Q Consensus 274 l~~l~~l~~~~gillI~DEv~~ 295 (477)
..++.++++++|++++=|+..+
T Consensus 207 ~P~~~ela~~~g~pi~GdD~Ks 228 (392)
T 3qvs_A 207 IPALKELAEKKGVPHAGNDGKT 228 (392)
T ss_dssp SHHHHHHHHHHTCEEECSSBCC
T ss_pred CHHHHHHHHHcCCCEecCcccC
Confidence 4677899999999999999775
No 253
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=32.78 E-value=36 Score=28.92 Aligned_cols=57 Identities=9% Similarity=0.088 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhccCCCCeeEEEecccCCCCCe----eeCCchhHHHHHHHHHHhCcEEE
Q 011777 233 AARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGA----VELAPGYLKLVYDIVRKAGGVCI 289 (477)
Q Consensus 233 ~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~----~~~~~~~l~~l~~l~~~~gillI 289 (477)
...+.+.++++++.........|++.|...+... ...-..+-+.++++|+++|+.+|
T Consensus 112 ~~~~~~~l~~~i~~~~~~~~~vil~~p~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~~~~v 172 (216)
T 3rjt_A 112 IDEYRDTLRHLVATTKPRVREMFLLSPFYLEPNRSDPMRKTVDAYIEAMRDVAASEHVPFV 172 (216)
T ss_dssp HHHHHHHHHHHHHHHGGGSSEEEEECCCCCCCCTTSHHHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEECCCcCCCCcchHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence 3444566777776443335677777764322110 11113456778888999997665
No 254
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=31.37 E-value=27 Score=29.34 Aligned_cols=55 Identities=5% Similarity=0.039 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhccCCCCeeEEEecccCCC-CCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777 234 ARYAQDLQDHIDFGTSGKVAGFIAETIQGV-GGAVELAPGYLKLVYDIVRKAGGVCI 289 (477)
Q Consensus 234 ~~~~~~le~~i~~~~~~~~a~vi~epi~~~-~G~~~~~~~~l~~l~~l~~~~gillI 289 (477)
..+.+.++++++.........|++.+..+. .| ......+-+.++++|+++|+.+|
T Consensus 82 ~~~~~~l~~li~~~~~~~~~vil~~~~~p~~~~-~~~~~~~n~~~~~~a~~~~v~~i 137 (190)
T 1ivn_A 82 QQTEQTLRQILQDVKAANAEPLLMQIRLPANYG-RRYNEAFSAIYPKLAKEFDVPLL 137 (190)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECCCCCGGGC-HHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeccCCcchh-HHHHHHHHHHHHHHHHHcCCeEE
Confidence 334456666665332224556666542221 11 11123455678889999987765
No 255
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=31.37 E-value=27 Score=25.68 Aligned_cols=20 Identities=10% Similarity=-0.080 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhCcEEEEcCc
Q 011777 274 LKLVYDIVRKAGGVCIADEV 293 (477)
Q Consensus 274 l~~l~~l~~~~gillI~DEv 293 (477)
-.+|++++++||+.++.|.-
T Consensus 29 A~~I~~~A~e~~VPi~e~~~ 48 (83)
T 3bzy_B 29 ALQIIKLAELYDIPVIEDIP 48 (83)
T ss_dssp HHHHHHHHHHTTCCEEECHH
T ss_pred HHHHHHHHHHcCCCEEeCHH
Confidence 47999999999999999975
No 256
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=30.31 E-value=2.2e+02 Score=25.39 Aligned_cols=72 Identities=14% Similarity=0.119 Sum_probs=34.0
Q ss_pred EeecCCcccccCCCCCHHHHHHHHHHH-hhc--cccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHH
Q 011777 99 LDAFAGIVTVSCGHCHPDVLNAIFEQS-KLL--QHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMA 175 (477)
Q Consensus 99 lD~~~g~~~~~lGh~~p~v~~Av~~~l-~~~--~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~a 175 (477)
+|..-|..+.|+..+ |.+++++++.. +.. .|-. ..++ ..+.+.+++. +.+.+.|-.-.++-....++.+
T Consensus 59 vDVmDg~FVpnit~G-~~~v~~lr~~~p~~~ldvHLm--v~~p--~~~i~~~~~a---GAd~itvH~Ea~~~~~~~i~~i 130 (246)
T 3inp_A 59 FDVMDNHYVPNLTFG-PMVLKALRDYGITAGMDVHLM--VKPV--DALIESFAKA---GATSIVFHPEASEHIDRSLQLI 130 (246)
T ss_dssp EEEEBSSSSSCBCCC-HHHHHHHHHHTCCSCEEEEEE--CSSC--HHHHHHHHHH---TCSEEEECGGGCSCHHHHHHHH
T ss_pred EEecCCCcCcchhcC-HHHHHHHHHhCCCCeEEEEEe--eCCH--HHHHHHHHHc---CCCEEEEccccchhHHHHHHHH
Confidence 444444444444443 57888887764 221 1111 1122 2234444443 4566666544333345566666
Q ss_pred Hhc
Q 011777 176 RLS 178 (477)
Q Consensus 176 r~~ 178 (477)
+.+
T Consensus 131 r~~ 133 (246)
T 3inp_A 131 KSF 133 (246)
T ss_dssp HTT
T ss_pred HHc
Confidence 553
No 257
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=29.87 E-value=46 Score=27.59 Aligned_cols=53 Identities=9% Similarity=0.087 Sum_probs=29.3
Q ss_pred HHHHHHHHHhccCCCCeeEEEecc-cCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777 236 YAQDLQDHIDFGTSGKVAGFIAET-IQGVGGAVELAPGYLKLVYDIVRKAGGVCI 289 (477)
Q Consensus 236 ~~~~le~~i~~~~~~~~a~vi~ep-i~~~~G~~~~~~~~l~~l~~l~~~~gillI 289 (477)
+.+.++++++.........+++.. ....-|. .....+-+.+.++|+++|+.+|
T Consensus 88 ~~~~~~~~i~~~~~~~~~vvl~~~~~p~~~~~-~~~~~~~~~~~~~a~~~~~~~v 141 (185)
T 3hp4_A 88 MQTNLTALVKKSQAANAMTALMEIYIPPNYGP-RYSKMFTSSFTQISEDTNAHLM 141 (185)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCCCCSTTCH-HHHHHHHHHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHHHHHHcCCeEEEEeCCCCCcccH-HHHHHHHHHHHHHHHHcCCEEE
Confidence 345566666533223445566652 1211121 1224566788899999998876
No 258
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=27.41 E-value=79 Score=23.07 Aligned_cols=38 Identities=11% Similarity=0.152 Sum_probs=27.5
Q ss_pred CCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCc
Q 011777 155 LKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGS 195 (477)
Q Consensus 155 ~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~ 195 (477)
..-|++|.+|.-+..++-.+... |-+ +..++|++.++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~--G~~-v~~l~GG~~~W~ 91 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAE--GYE-AMSLEGGLQALT 91 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHH--TCC-EEEETTGGGCC-
T ss_pred CCEEEEcCCCChHHHHHHHHHHc--CCc-EEEEcccHHHHH
Confidence 45688999998877766665543 656 888999988763
No 259
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Probab=27.00 E-value=65 Score=28.63 Aligned_cols=37 Identities=11% Similarity=0.022 Sum_probs=28.2
Q ss_pred CCeeEEEecccCCC----------CCeeeCCchhHHHHHHHHHHhCcEEEE
Q 011777 250 GKVAGFIAETIQGV----------GGAVELAPGYLKLVYDIVRKAGGVCIA 290 (477)
Q Consensus 250 ~~~a~vi~epi~~~----------~G~~~~~~~~l~~l~~l~~~~gillI~ 290 (477)
-..++||||-++-. .|.... +.++.+++++||+.+|.
T Consensus 166 l~PagVicEi~~~~~~~~~~~~~~dG~mar----~~~l~~fA~~h~L~iit 212 (233)
T 1k4i_A 166 KRPVAVISEIVDDGQEVEGRAVRAAPGMLR----GDECVAFARRWGLKVCT 212 (233)
T ss_dssp CCSBEEEEEBEECCEECTTSSCEESCEECC----HHHHHHHHHHTTCEEEE
T ss_pred CCceEEEEEeCCCcccccccccCCCCCcCC----HHHHHHHHHHcCCcEEE
Confidence 45789999976441 454554 78899999999999984
No 260
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=26.91 E-value=97 Score=24.45 Aligned_cols=49 Identities=22% Similarity=0.279 Sum_probs=32.0
Q ss_pred HHHHHHhhC--CCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccC
Q 011777 143 FAEALASKM--PGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHG 193 (477)
Q Consensus 143 l~~~La~~~--~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG 193 (477)
+.+.+.+.. +.+..-|++|.+|.-+..+|-.+... |-..|..+.++|.|
T Consensus 61 ~~~~l~~~~~~~~~~~ivv~C~sG~RS~~aa~~L~~~--G~~~v~~l~GG~~~ 111 (134)
T 1vee_A 61 FLKKLSLKFKDPENTTLYILDKFDGNSELVAELVALN--GFKSAYAIKDGAEG 111 (134)
T ss_dssp HHHHHHTTCSCGGGCEEEEECSSSTTHHHHHHHHHHH--TCSEEEECTTTTTS
T ss_pred HHHHHHHHhCCCCCCEEEEEeCCCCcHHHHHHHHHHc--CCcceEEecCCccC
Confidence 334444443 22334688999998777666555443 66678899999965
No 261
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=26.80 E-value=3.8e+02 Score=24.70 Aligned_cols=42 Identities=17% Similarity=0.163 Sum_probs=29.1
Q ss_pred HHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777 237 AQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI 289 (477)
Q Consensus 237 ~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI 289 (477)
..+|.++++.....++.+|++||..+. +-+..|+++.|+-++
T Consensus 225 ~~~l~~l~~~ik~~~v~~If~e~~~~~-----------~~~~~ia~e~g~~v~ 266 (312)
T 2o1e_A 225 AASLAKLKTYAKEHNVKVIYFEEIASS-----------KVADTLASEIGAKTE 266 (312)
T ss_dssp HHHHHHHHHHTTSSCCCEEECSSCCCH-----------HHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCh-----------HHHHHHHHHhCCcEE
Confidence 466777776666778999999985431 344556888888764
No 262
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=26.22 E-value=63 Score=27.14 Aligned_cols=56 Identities=7% Similarity=0.049 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhccCCCCeeEEEecccCCCCCeee-------CCchhHHHHHHHHHHhCcEEE
Q 011777 234 ARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVE-------LAPGYLKLVYDIVRKAGGVCI 289 (477)
Q Consensus 234 ~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~-------~~~~~l~~l~~l~~~~gillI 289 (477)
..+.+.++++++.........+++.+......... .-..+-+.++++|+++|+.+|
T Consensus 97 ~~~~~~~~~~i~~~~~~~~~vil~~~~p~~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~v~~i 159 (204)
T 3p94_A 97 ENVFGNLVSMAELAKANHIKVIFCSVLPAYDFPWRPGMQPADKVIQLNKWIKEYADKNGLTYV 159 (204)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECCCCCSCBTTBTTCCCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHcCCcEE
Confidence 33456666666533223455666665322110011 113455668899999998776
No 263
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=26.21 E-value=36 Score=25.83 Aligned_cols=21 Identities=14% Similarity=0.001 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhCcEEEEcCcc
Q 011777 274 LKLVYDIVRKAGGVCIADEVQ 294 (477)
Q Consensus 274 l~~l~~l~~~~gillI~DEv~ 294 (477)
-++|++++++||+.++.|.--
T Consensus 44 A~~I~~~A~e~gVPi~e~~~L 64 (97)
T 3t7y_A 44 AKRIIAEAEKYGVPIMRNVPL 64 (97)
T ss_dssp HHHHHHHHHHHTCCEEECHHH
T ss_pred HHHHHHHHHHcCCeEEECHHH
Confidence 468999999999999999753
No 264
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=25.51 E-value=39 Score=25.42 Aligned_cols=21 Identities=14% Similarity=0.009 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhCcEEEEcCcc
Q 011777 274 LKLVYDIVRKAGGVCIADEVQ 294 (477)
Q Consensus 274 l~~l~~l~~~~gillI~DEv~ 294 (477)
-.+|+++++++|+.++.|.--
T Consensus 29 A~~I~e~A~e~gVPi~e~~~L 49 (93)
T 2vt1_B 29 ALAVRKYANEVGIPTVRDVKL 49 (93)
T ss_dssp HHHHHHHHHHTTCCEEECHHH
T ss_pred HHHHHHHHHHcCCCEEECHHH
Confidence 479999999999999999753
No 265
>1vko_A Inositol-3-phosphate synthase; CE21227, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD; 2.30A {Caenorhabditis elegans} SCOP: c.2.1.3 d.81.1.3
Probab=25.51 E-value=2.9e+02 Score=27.65 Aligned_cols=22 Identities=5% Similarity=0.123 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhCcEEEEcCccc
Q 011777 274 LKLVYDIVRKAGGVCIADEVQT 295 (477)
Q Consensus 274 l~~l~~l~~~~gillI~DEv~~ 295 (477)
..++.++++++|++++=|+..+
T Consensus 306 ~P~~~elae~~gvpI~GDD~KS 327 (537)
T 1vko_A 306 VPGLIELAERHKVFVGGDDFKS 327 (537)
T ss_dssp CHHHHHHHHHHTCCEECSCBCC
T ss_pred CHHHHHHHHHhCCceecccccc
Confidence 4567899999999999999877
No 266
>3r45_C Holliday junction recognition protein; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=25.42 E-value=73 Score=22.49 Aligned_cols=29 Identities=10% Similarity=0.171 Sum_probs=25.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhCCC
Q 011777 369 DKERRQAHCADVGSHLLGRLRTLQERHDI 397 (477)
Q Consensus 369 ~~~~~~~~~~~~~~~l~~~L~~l~~~~~~ 397 (477)
.++.+..++++...+|..++.++.++|..
T Consensus 15 ~d~~Ll~kLr~sr~RFQ~~Mq~lieKYn~ 43 (81)
T 3r45_C 15 EDDQLLQKLRASRRRFQRRMQRLIEKYNQ 43 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45678999999999999999999998854
No 267
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=25.41 E-value=2.4e+02 Score=23.91 Aligned_cols=18 Identities=6% Similarity=0.023 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHhCcEEE
Q 011777 272 GYLKLVYDIVRKAGGVCI 289 (477)
Q Consensus 272 ~~l~~l~~l~~~~gillI 289 (477)
.|-+.+.++|+++++.+|
T Consensus 150 ~~n~~~~~~a~~~~v~~v 167 (240)
T 3mil_A 150 IYSDALAKLANEEKVPFV 167 (240)
T ss_dssp HHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHhCCeEE
Confidence 555677899999998776
No 268
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=24.82 E-value=40 Score=25.65 Aligned_cols=21 Identities=24% Similarity=0.069 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhCcEEEEcCcc
Q 011777 274 LKLVYDIVRKAGGVCIADEVQ 294 (477)
Q Consensus 274 l~~l~~l~~~~gillI~DEv~ 294 (477)
-.+|+++++++|+.++.|.--
T Consensus 29 A~~I~e~A~e~gVPi~e~~~L 49 (98)
T 3c01_E 29 ALAVRAYAEKVGVPVIVDIKL 49 (98)
T ss_dssp HHHHHHHHHHHTCCEEECHHH
T ss_pred HHHHHHHHHHcCCCeecCHHH
Confidence 469999999999999999743
No 269
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=24.78 E-value=1.3e+02 Score=28.73 Aligned_cols=56 Identities=11% Similarity=0.106 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhccCCCCeeEEEecccCCCC-----Cee-eCCchhHHHHHHHHHHhCcEEE
Q 011777 234 ARYAQDLQDHIDFGTSGKVAGFIAETIQGVG-----GAV-ELAPGYLKLVYDIVRKAGGVCI 289 (477)
Q Consensus 234 ~~~~~~le~~i~~~~~~~~a~vi~epi~~~~-----G~~-~~~~~~l~~l~~l~~~~gillI 289 (477)
..+.+.++++++..+......|++.|..... |.+ ..-..+-+.++++|+++++.+|
T Consensus 252 ~~~~~~l~~ii~~lr~~~a~vilvtP~~~~~~~~~~~~~~~~~~~~~~~i~~lA~~~~v~~i 313 (375)
T 2o14_A 252 AEFKEVMRDMIRQVKAKGADVILSTPQGRATDFTSEGIHSSVNRWYRASILALAEEEKTYLI 313 (375)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEECCCCCTTCBCTTSCBCCTTSTTHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCcccccCcccchhHHHHHHHHHHHHHHHHcCCeEE
Confidence 3445667777764333345677777754321 211 1234566788899999998766
No 270
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=24.32 E-value=26 Score=27.52 Aligned_cols=65 Identities=17% Similarity=0.233 Sum_probs=44.0
Q ss_pred HHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCcee
Q 011777 365 LRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLV 440 (477)
Q Consensus 365 l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v 440 (477)
|..+.++++.++.+++.+.+.+-+.++...|--+..-|..-...+|+ ......+++.+.++|++-
T Consensus 14 l~~l~d~el~~rar~LA~kIv~pv~el~~~hTTvSVERtVlr~mGid-----------gvda~~iVd~~~e~gLLg 78 (121)
T 3kp1_E 14 LANLSDEELQTRFWEMAEKIVDPLLDLGKKNTTPSIERSVLLRMGFS-----------SLEAKAIVDKTMDRGLMG 78 (121)
T ss_dssp GTTCCHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHTTCC-----------HHHHHHHHHHHHHTTCGG
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHhCCC-----------ccchHHHHHHHHHccccc
Confidence 34456788999999999999999999988775443323222222332 234556899999998864
No 271
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=23.96 E-value=1e+02 Score=25.29 Aligned_cols=55 Identities=13% Similarity=-0.014 Sum_probs=29.7
Q ss_pred HHHHHHHHhccCCCCeeEEEec-ccCCCCCeeeCCchhHHHHH-HHHHHhCcEE-EEcCccc
Q 011777 237 AQDLQDHIDFGTSGKVAGFIAE-TIQGVGGAVELAPGYLKLVY-DIVRKAGGVC-IADEVQT 295 (477)
Q Consensus 237 ~~~le~~i~~~~~~~~a~vi~e-pi~~~~G~~~~~~~~l~~l~-~l~~~~gill-I~DEv~~ 295 (477)
.+.|.++++ ..++..|+++ |.+.+ |...+.....++.. .+++++++.+ .+||-+|
T Consensus 44 ~~~l~~li~---~~~~~~ivVGlP~~~n-Gt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~T 101 (150)
T 1vhx_A 44 LSRLSELIK---DYTIDKIVLGFPKNMN-GTVGPRGEASQTFAKVLETTYNVPVVLWDERLT 101 (150)
T ss_dssp HHHHHHHHT---TSEEEEEEEECCCCBT-TBCCHHHHHHHHHHHHHHHHHCSCEEEECCSSC
T ss_pred HHHHHHHHH---HcCCCEEEEeeeecCC-cchhHHHHHHHHHHHHHHHhhCCCEEEecCCCC
Confidence 477888887 3466666666 54333 32222222222333 4455567754 4799776
No 272
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=23.41 E-value=72 Score=23.65 Aligned_cols=42 Identities=7% Similarity=0.129 Sum_probs=29.6
Q ss_pred CCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcc
Q 011777 152 PGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSS 196 (477)
Q Consensus 152 ~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~ 196 (477)
+.+..-|++|.+|.-|..++-.+... |- .+..++|++.++..
T Consensus 54 ~~~~~ivvyC~~g~rs~~a~~~L~~~--G~-~v~~l~GG~~~W~~ 95 (100)
T 3foj_A 54 NDNETYYIICKAGGRSAQVVQYLEQN--GV-NAVNVEGGMDEFGD 95 (100)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTT--TC-EEEEETTHHHHHCS
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHC--CC-CEEEecccHHHHHH
Confidence 33445788899998887776665433 55 78889998887643
No 273
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=23.09 E-value=72 Score=24.87 Aligned_cols=53 Identities=17% Similarity=0.270 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhCCCCCCEEEEe-CChHHHHHHHHHHHHhccCCceEEEEccCccCCc
Q 011777 140 IADFAEALASKMPGNLKVVYFV-NSGTEANELAMLMARLSTGNLGMIALRNAYHGGS 195 (477)
Q Consensus 140 ~~~l~~~La~~~~~~~~~v~~~-~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~ 195 (477)
..++.+.+.+.-+.+..-|++| .+|.-|..++..+... |- .|..++|++.++.
T Consensus 75 ~~~~~~~~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~--G~-~v~~l~GG~~~W~ 128 (134)
T 3g5j_A 75 LKDIYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSL--GV-NVYQLEGGYKAYR 128 (134)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHT--TC-CCEEETTHHHHHH
T ss_pred HHHHHHHHHHhccCCCeEEEEECCCChHHHHHHHHHHHc--CC-ceEEEeCcHHHHH
Confidence 3456666655422213456777 4888777666655433 55 7888888887653
No 274
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=22.61 E-value=97 Score=31.22 Aligned_cols=31 Identities=19% Similarity=0.184 Sum_probs=25.9
Q ss_pred CchhHHHHHHHHHHhCcEEEEcCcccCccCC
Q 011777 270 APGYLKLVYDIVRKAGGVCIADEVQTGFGRT 300 (477)
Q Consensus 270 ~~~~l~~l~~l~~~~gillI~DEv~~gfgr~ 300 (477)
+.+.++++.+-|+++|+-||+|=|....+..
T Consensus 91 t~~dfk~Lv~~aH~~GI~VilD~V~NHt~~~ 121 (527)
T 1gcy_A 91 SDAQLRQAASALGGAGVKVLYDVVPNHMNRG 121 (527)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSBCCTT
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEeecCcCCC
Confidence 3567899999999999999999998766543
No 275
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=22.56 E-value=2.4e+02 Score=21.02 Aligned_cols=44 Identities=20% Similarity=0.100 Sum_probs=30.4
Q ss_pred CCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCccc
Q 011777 151 MPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSG 197 (477)
Q Consensus 151 ~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~ 197 (477)
.+.+..-|++|.+|.-|..++-.+... |-.. ..++|++.++...
T Consensus 53 ~~~~~~ivvyC~~G~rs~~aa~~L~~~--G~~~-~~l~GG~~~W~~~ 96 (110)
T 2k0z_A 53 QHKDKKVLLHCRAGRRALDAAKSMHEL--GYTP-YYLEGNVYDFEKY 96 (110)
T ss_dssp SCSSSCEEEECSSSHHHHHHHHHHHHT--TCCC-EEEESCGGGTTTT
T ss_pred cCCCCEEEEEeCCCchHHHHHHHHHHC--CCCE-EEecCCHHHHHHC
Confidence 344445788999998887776655443 5555 7788999887544
No 276
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=22.33 E-value=2.1e+02 Score=20.51 Aligned_cols=50 Identities=14% Similarity=0.145 Sum_probs=33.3
Q ss_pred HHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCcc
Q 011777 238 QDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFG 298 (477)
Q Consensus 238 ~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfg 298 (477)
+...+.++ .++...|++-..- +++....+..+|+++++.++.-.-...+|
T Consensus 17 ~~v~kai~---~gkaklViiA~D~--------~~~~~~~i~~lc~~~~Ip~~~v~sk~eLG 66 (82)
T 3v7e_A 17 KQTVKALK---RGSVKEVVVAKDA--------DPILTSSVVSLAEDQGISVSMVESMKKLG 66 (82)
T ss_dssp HHHHHHHT---TTCEEEEEEETTS--------CHHHHHHHHHHHHHHTCCEEEESCHHHHH
T ss_pred HHHHHHHH---cCCeeEEEEeCCC--------CHHHHHHHHHHHHHcCCCEEEECCHHHHH
Confidence 55666666 3566666654321 33678999999999999998765444343
No 277
>3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein structure initiative, TI protein; HET: GOL; 1.76A {Bordetella bronchiseptica} PDB: 3k4w_A
Probab=21.82 E-value=2.6e+02 Score=25.29 Aligned_cols=50 Identities=14% Similarity=-0.034 Sum_probs=28.9
Q ss_pred HHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEc
Q 011777 237 AQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIAD 291 (477)
Q Consensus 237 ~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D 291 (477)
.++|++ +.. ..+.+|-+.|.....+ ..+....+..+.++|.++|+.+++-
T Consensus 108 ~~eL~~-~~~---~g~~Gi~~~~~~~~~~-~~~~d~~~~~~~~~a~e~glpv~iH 157 (291)
T 3irs_A 108 MAQMQE-ILD---LGIRIVNLEPGVWATP-MHVDDRRLYPLYAFCEDNGIPVIMM 157 (291)
T ss_dssp HHHHHH-HHH---TTCCCEEECGGGSSSC-CCTTCGGGHHHHHHHHHTTCCEEEE
T ss_pred HHHHHH-HHh---CCCeEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHcCCeEEEe
Confidence 456666 432 3455555555322112 2234455688888899999888754
No 278
>2gwg_A 4-oxalomesaconate hydratase; TIM-barrel like protein, structural genomics, PSI, protein S initiative; 1.80A {Rhodopseudomonas palustris} SCOP: c.1.9.15
Probab=21.74 E-value=4.8e+02 Score=24.08 Aligned_cols=52 Identities=6% Similarity=-0.059 Sum_probs=34.1
Q ss_pred HHHHHHHHhccCCCCeeEEEecccCCC--CCeeeCCchhHHHHHHHHHHhCcEEEEc
Q 011777 237 AQDLQDHIDFGTSGKVAGFIAETIQGV--GGAVELAPGYLKLVYDIVRKAGGVCIAD 291 (477)
Q Consensus 237 ~~~le~~i~~~~~~~~a~vi~epi~~~--~G~~~~~~~~l~~l~~l~~~~gillI~D 291 (477)
.++|+++++. ..+.+|-+.+.... .+........+..+.++|.++|+.+++=
T Consensus 125 ~~eL~r~~~~---~g~~Gv~l~~~~~~~~~~~~~l~d~~~~p~~~~a~e~~lpv~iH 178 (350)
T 2gwg_A 125 IPELEKCVKE---YGFVAINLNPDPSGGHWTSPPLTDRIWYPIYEKMVELEIPAMIH 178 (350)
T ss_dssp HHHHHHHHHT---SCCCEEEECSCTTSSCCCSCCTTSGGGHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHHHhc---cCCeEEEECCCCCCccCCCCCCCCHHHHHHHHHHHHcCCeEEEC
Confidence 4778887752 35677777663211 1113345667899999999999999853
No 279
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=21.74 E-value=84 Score=28.51 Aligned_cols=54 Identities=4% Similarity=0.086 Sum_probs=35.6
Q ss_pred HHHHHHHHhh-CCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCc
Q 011777 141 ADFAEALASK-MPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGS 195 (477)
Q Consensus 141 ~~l~~~La~~-~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~ 195 (477)
.++.+.+.+. ++.+..-|++|.+|.-|..++..+. ...|-..+..++|++.+|.
T Consensus 219 ~~l~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~-~~~G~~~v~~l~GG~~~W~ 273 (285)
T 1uar_A 219 EELRALYEPLGITKDKDIVVYCRIAERSSHSWFVLK-YLLGYPHVKNYDGSWTEWG 273 (285)
T ss_dssp HHHHHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHH-TTSCCSCEEEESSHHHHHT
T ss_pred HHHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHH-HHcCCCCcceeCchHHHHh
Confidence 4566666653 3334456888999988776655543 1236667888999988774
No 280
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=21.50 E-value=1.1e+02 Score=27.65 Aligned_cols=54 Identities=7% Similarity=0.187 Sum_probs=36.7
Q ss_pred HHHHHHHHhh-CCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCc
Q 011777 141 ADFAEALASK-MPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGS 195 (477)
Q Consensus 141 ~~l~~~La~~-~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~ 195 (477)
.++.+.+.+. .+.+..-|++|.+|.-|..++..+.. ..|-..+..++|++..|.
T Consensus 212 ~~l~~~~~~~~~~~~~~iv~yC~~G~rs~~a~~~L~~-~~G~~~v~~l~GG~~~W~ 266 (277)
T 3aay_A 212 EELAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRE-LLGHQNVKNYDGSWTEYG 266 (277)
T ss_dssp HHHHHHHHHHTCCTTSCEEEECSSHHHHHHHHHHHHT-TSCCSCEEEESSHHHHHT
T ss_pred HHHHHHHHHcCCCCCCCEEEEcCcHHHHHHHHHHHHH-HcCCCcceeeCchHHHHh
Confidence 4666666653 34444678899999988766655442 136667888999887764
No 281
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=21.04 E-value=4.2e+02 Score=24.97 Aligned_cols=39 Identities=8% Similarity=0.033 Sum_probs=24.2
Q ss_pred CeeEEEec--ccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEc
Q 011777 251 KVAGFIAE--TIQGVGGAVELAPGYLKLVYDIVRKAGGVCIAD 291 (477)
Q Consensus 251 ~~a~vi~e--pi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D 291 (477)
++-.||+= -+..+|++.- .-+- -.+.-+|+.||+++++=
T Consensus 227 ~Vd~VivGAd~V~aNG~v~N-KiGT-~~lAl~Ak~~~vPfyV~ 267 (347)
T 1t9k_A 227 LIDAVVVGADRIALNGDTAN-KIGT-YSLAVLAKRNNIPFYVA 267 (347)
T ss_dssp CCSEEEECCSEEETTSCEEE-ETTH-HHHHHHHHHTTCCEEEE
T ss_pred CCCEEEECccEEecCCCEEe-cccH-HHHHHHHHHcCCCEEEe
Confidence 45555554 3666666443 3333 35677899999998863
No 282
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=20.54 E-value=4.8e+02 Score=23.64 Aligned_cols=124 Identities=13% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCC
Q 011777 115 PDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGG 194 (477)
Q Consensus 115 p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~ 194 (477)
..+++++.+.|.+..-....+...-...+.++|.+ +..-++-.....++..+|++.++|.=.
T Consensus 142 ~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~------------------Ld~~~~~~l~~~~~~~~v~~H~af~Yf 203 (291)
T 1pq4_A 142 KRQATTIAKELAELDPDNRDQYEANLAAFLAELER------------------LNQELGQILQPLPQRKFIVFHPSWAYF 203 (291)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH------------------HHHHHHHHHTTCSCCEEEESSCCCHHH
T ss_pred HHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHH------------------HHHHHHHHHhCCCCCEEEEECCchHHH
Q ss_pred cccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhH
Q 011777 195 SSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYL 274 (477)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l 274 (477)
.... |+..+..... ..... ..+|.++++.....++.+|++||..++
T Consensus 204 ~~~y----------------Gl~~~~~~~~-~~eps------~~~l~~l~~~ik~~~v~~If~e~~~~~----------- 249 (291)
T 1pq4_A 204 ARDY----------------NLVQIPIEVE-GQEPS------AQELKQLIDTAKENNLTMVFGETQFST----------- 249 (291)
T ss_dssp HHHT----------------TCEEEESCBT-TBCCC------HHHHHHHHHHHHTTTCCEEEEETTSCC-----------
T ss_pred HHHC----------------CCEEeecccC-CCCCC------HHHHHHHHHHHHHcCCCEEEEeCCCCh-----------
Q ss_pred HHHHHHHHHhCcEEEE
Q 011777 275 KLVYDIVRKAGGVCIA 290 (477)
Q Consensus 275 ~~l~~l~~~~gillI~ 290 (477)
+-+..|+++.|+-++.
T Consensus 250 ~~~~~ia~~~g~~v~~ 265 (291)
T 1pq4_A 250 KSSEAIAAEIGAGVEL 265 (291)
T ss_dssp HHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHcCCeEEE
No 283
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=20.33 E-value=3.5e+02 Score=23.73 Aligned_cols=57 Identities=11% Similarity=0.034 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhhc--cccccccCChHHHHHHHHHHhhCCCCCCEEEEeCCh-HHHHHHHHHHHHhc
Q 011777 115 PDVLNAIFEQSKLL--QHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSG-TEANELAMLMARLS 178 (477)
Q Consensus 115 p~v~~Av~~~l~~~--~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sG-seA~~~Al~~ar~~ 178 (477)
+.+++++++..+.. .|... .++ ..+.+.+++. +.+.+.|-.-. +.-....++.++.+
T Consensus 46 ~~~v~~lr~~~~~~~dvhLmv--~dp--~~~i~~~~~a---GAd~itvh~Ea~~~~~~~~i~~i~~~ 105 (231)
T 3ctl_A 46 PFFVSQVKKLATKPLDCHLMV--TRP--QDYIAQLARA---GADFITLHPETINGQAFRLIDEIRRH 105 (231)
T ss_dssp HHHHHHHHTTCCSCEEEEEES--SCG--GGTHHHHHHH---TCSEEEECGGGCTTTHHHHHHHHHHT
T ss_pred HHHHHHHHhccCCcEEEEEEe--cCH--HHHHHHHHHc---CCCEEEECcccCCccHHHHHHHHHHc
Confidence 56888887643221 12111 122 1233444443 44656554322 22255666666653
No 284
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=20.23 E-value=1.9e+02 Score=26.09 Aligned_cols=58 Identities=7% Similarity=0.020 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeee---------CCchhHHHHHHHHHHhCcEEEE
Q 011777 232 DAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVE---------LAPGYLKLVYDIVRKAGGVCIA 290 (477)
Q Consensus 232 ~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~---------~~~~~l~~l~~l~~~~gillI~ 290 (477)
|....++.++++++...... +=+|+=|-...+|... .+..+++.|.++|+++++.+|+
T Consensus 34 d~~~Nl~~~~~~i~~A~~~g-adlvvfPE~~l~gy~~~~~~~~a~~~~~~~~~~l~~la~~~~i~iv~ 100 (281)
T 3p8k_A 34 DSSKNETQITQWFEKNMNAE-VDVVVLPEMWNNGYDLEHLNEKADNNLGQSFSFIKHLAEKYKVDIVA 100 (281)
T ss_dssp CHHHHHHHHHHHHHHHCCTT-CCEEECCSSTTTTTCGGGHHHHSEETTHHHHHHHHHHHHHHTCEEEE
T ss_pred CHHHHHHHHHHHHHHHHhCC-CcEEEcCCCccCCCChhHHHHhhhccCcHHHHHHHHHHhhCCeEEEE
Confidence 34444566666666433233 3356667555555322 1356789999999999998774
Done!