BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011779
         (477 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2JJM|A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|B Chain B, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|C Chain C, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|D Chain D, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|E Chain E, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|F Chain F, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|G Chain G, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|H Chain H, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|I Chain I, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|J Chain J, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|K Chain K, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|L Chain L, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558
          Length = 394

 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 60/117 (51%), Gaps = 11/117 (9%)

Query: 337 IQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTA 396
           I+DRV F+ K   VA  LA  D+++  S+   E FG + +EAMA  +P +       GT 
Sbjct: 265 IEDRVLFLGKQDNVAELLAMSDLMLLLSEK--ESFGLVLLEAMACGVPCI-------GTR 315

Query: 397 AGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQ 453
            GG  E++ +G TG L  VG    T +A   ++L    E    MG+R  E V E F+
Sbjct: 316 VGGIPEVIQHGDTGYLCEVGD--TTGVADQAIQLLKDEELHRNMGERARESVYEQFR 370


>pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|B Chain B, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|C Chain C, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|D Chain D, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|E Chain E, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|F Chain F, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|G Chain G, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|H Chain H, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
          Length = 414

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 60/117 (51%), Gaps = 11/117 (9%)

Query: 337 IQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTA 396
           I+DRV F+ K   VA  LA  D+++  S+   E FG + +EAMA  +P +       GT 
Sbjct: 285 IEDRVLFLGKQDNVAELLAMSDLMLLLSEK--ESFGLVLLEAMACGVPCI-------GTR 335

Query: 397 AGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQ 453
            GG  E++ +G TG L  VG    T +A   ++L    E    MG+R  E V E F+
Sbjct: 336 VGGIPEVIQHGDTGYLCEVGD--TTGVADQAIQLLKDEELHRNMGERARESVYEQFR 390


>pdb|2X6Q|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
           Horikoshi
 pdb|2X6Q|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
           Horikoshi
 pdb|2X6R|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
           Horikoshi Produced By Soaking In Trehalose
 pdb|2X6R|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
           Horikoshi Produced By Soaking In Trehalose
          Length = 416

 Score = 37.7 bits (86), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 83/382 (21%), Positives = 142/382 (37%), Gaps = 62/382 (16%)

Query: 92  LLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151
           +L  L  LLR +G +  W  I+ P+E   V  +  + +          +G E++    + 
Sbjct: 58  ILHSLVPLLRSIGIEARWFVIEGPTEFFNVTKTFHNAL----------QGNESLKLTEEM 107

Query: 152 DLIVLNTAVAG-KWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMID- 209
             + LN      K++D    + V          +H+ +       Y K  P +    ID 
Sbjct: 108 KELYLNVNRENSKFIDLSSFDYV---------LVHDPQPAALIEFYEKKSPWLWRCHIDL 158

Query: 210 SHVTAEYWKNRTR-----ERLRIKMPDTYVVHLGNSKELM------EVAEDNVAKR---V 255
           S    E+W+   R     +R    +P+     L  +K ++       ++E NV  +   +
Sbjct: 159 SSPNREFWEFLRRFVEKYDRYIFHLPEYVQPELDRNKAVIMPPSIDPLSEKNVELKQTEI 218

Query: 256 LREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESXXXXXXXXXXVPSVHAVIIG 315
           LR  + E   V  E  +   ++     KG        ++           +P V  +++G
Sbjct: 219 LR--ILERFDVDPEKPIITQVSRFDPWKG-------IFDVIEIYRKVKEKIPGVQLLLVG 269

Query: 316 ----SDMNAQTKFESELRNYVMQKKIQDRVHFVN-KTLTVAPYLAAIDVLVQNSQAWGEC 370
                D      FE  LR       ++   + +      V  +  A DV++Q S    E 
Sbjct: 270 VMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSIR--EG 327

Query: 371 FGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKL 430
           FG    EAM    PV+       G A GG    +V+G TG L     E +    + ++ L
Sbjct: 328 FGLTVTEAMWKGKPVI-------GRAVGGIKFQIVDGETGFLVRDANEAV----EVVLYL 376

Query: 431 ATHVERRLTMGKRGYERVKEIF 452
             H E    MG +  ERV++ F
Sbjct: 377 LKHPEVSKEMGAKAKERVRKNF 398


>pdb|2XMP|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
           From P.Horishiki In Complex With Udp
 pdb|2XMP|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
           From P.Horishiki In Complex With Udp
 pdb|2XA2|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
           From P.Horikoshii In Complex With Udpg
 pdb|2XA2|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
           From P.Horikoshii In Complex With Udpg
 pdb|2XA9|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
           From P.Horikoshii In Complex With Udpg
 pdb|2XA9|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
           From P.Horikoshii In Complex With Udpg
          Length = 416

 Score = 37.4 bits (85), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 83/382 (21%), Positives = 142/382 (37%), Gaps = 62/382 (16%)

Query: 92  LLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151
           +L  L  LLR +G +  W  I+ P+E   V  +  + +          +G E++    + 
Sbjct: 58  ILHSLVPLLRSIGIEARWFVIEGPTEFFNVTKTFHNAL----------QGNESLKLTEEM 107

Query: 152 DLIVLNTAVAG-KWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMID- 209
             + LN      K++D    + V          +H+ +       Y K  P +    ID 
Sbjct: 108 KELYLNVNRENSKFIDLSSFDYV---------LVHDPQPAALIEFYEKKSPWLWRCHIDL 158

Query: 210 SHVTAEYWKNRTR-----ERLRIKMPDTYVVHLGNSKELM------EVAEDNVAKR---V 255
           S    E+W+   R     +R    +P+     L  +K ++       ++E NV  +   +
Sbjct: 159 SSPNREFWEFLRRFVEKYDRYIFHLPEYVQPELDRNKAVIMPPSIDPLSEKNVELKQTEI 218

Query: 256 LREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESXXXXXXXXXXVPSVHAVIIG 315
           LR  + E   V  E  +   ++     KG        ++           +P V  +++G
Sbjct: 219 LR--ILERFDVDPEKPIITQVSRFDPWKG-------IFDVIEIYRKVKEKIPGVQLLLVG 269

Query: 316 ----SDMNAQTKFESELRNYVMQKKIQDRVHFVN-KTLTVAPYLAAIDVLVQNSQAWGEC 370
                D      FE  LR       ++   + +      V  +  A DV++Q S   G  
Sbjct: 270 VMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSIRAG-- 327

Query: 371 FGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKL 430
           FG    EAM    PV+       G A GG    +V+G TG L     E +    + ++ L
Sbjct: 328 FGLTVTEAMWKGKPVI-------GRAVGGIKFQIVDGETGFLVRDANEAV----EVVLYL 376

Query: 431 ATHVERRLTMGKRGYERVKEIF 452
             H E    MG +  ERV++ F
Sbjct: 377 LKHPEVSKEMGAKAKERVRKNF 398


>pdb|3S28|A Chain A, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|B Chain B, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|C Chain C, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|D Chain D, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|E Chain E, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|F Chain F, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|G Chain G, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|H Chain H, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S29|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications
          Length = 816

 Score = 35.8 bits (81), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 9/95 (9%)

Query: 369 ECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGL-LHPV-GKEGITPLAKN 426
           E FG   +EAM   LP          T  GG  EI+V+G +G  + P  G +    LA  
Sbjct: 675 EAFGLTVVEAMTCGLPTF-------ATCKGGPAEIIVHGKSGFHIDPYHGDQAADTLADF 727

Query: 427 IVKLATHVERRLTMGKRGYERVKEIFQEHHMAERI 461
             K          + K G +R++E +     ++R+
Sbjct: 728 FTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRL 762


>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
           First Step In Mycothiol Biosynthesis. Organism:
           Corynebacterium Glutamicum- Apo (Open) Structure.
 pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
           First Step In Mycothiol Biosynthesis. Organism:
           Corynebacterium Glutamicum- Apo (Open) Structure
          Length = 438

 Score = 34.7 bits (78), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 19/143 (13%)

Query: 312 VIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK---TLTVAPYLAAIDVLVQNSQAWG 368
           VII    +         R+   +  ++ R+ F++    +  VA Y AA  V V    ++ 
Sbjct: 279 VIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVP---SFN 335

Query: 369 ECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITP--LAKN 426
           E FG + +EA A   PV+  +        GG    V  G TGLL     +G +P   A  
Sbjct: 336 ESFGLVAMEAQASGTPVIAARV-------GGLPIAVAEGETGLL----VDGHSPHAWADA 384

Query: 427 IVKLATHVERRLTMGKRGYERVK 449
           +  L    E R+ MG+   E  +
Sbjct: 385 LATLLDDDETRIRMGEDAVEHAR 407


>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The
           First Step In Mycothiol Biosynthesis. Organism :
           Corynebacterium Glutamicum- Complex With Udp
 pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha : The
           First Step In Mycothiol Biosynthesis. Organism :
           Corynebacterium Glutamicum- Complex With Udp
 pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
           First Step In Mycothiol Biosynthesis. Organism:
           Corynebacterium Glutamicum : Complex With Udp And
           1l-Ins-1- P.
 pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
           First Step In Mycothiol Biosynthesis. Organism:
           Corynebacterium Glutamicum : Complex With Udp And
           1l-Ins-1- P
          Length = 426

 Score = 34.3 bits (77), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 19/143 (13%)

Query: 312 VIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK---TLTVAPYLAAIDVLVQNSQAWG 368
           VII    +         R+   +  ++ R+ F++    +  VA Y AA  V V    ++ 
Sbjct: 259 VIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVP---SFN 315

Query: 369 ECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITP--LAKN 426
           E FG + +EA A   PV+  +        GG    V  G TGLL     +G +P   A  
Sbjct: 316 ESFGLVAMEAQASGTPVIAARV-------GGLPIAVAEGETGLL----VDGHSPHAWADA 364

Query: 427 IVKLATHVERRLTMGKRGYERVK 449
           +  L    E R+ MG+   E  +
Sbjct: 365 LATLLDDDETRIRMGEDAVEHAR 387


>pdb|2R60|A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of
           Halothermothrix Orenii
 pdb|2R66|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-F6p
           Of Halothermothrix Orenii
 pdb|2R68|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-S6p
           Of Halothermothrix Orenii
          Length = 499

 Score = 33.9 bits (76), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 9/84 (10%)

Query: 369 ECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIV 428
           E FG   +EAMA  LP ++       T  GG  EI+  G  G+L  V  E    +A+ ++
Sbjct: 369 EPFGLAPVEAMASGLPAVV-------TRNGGPAEILDGGKYGVL--VDPEDPEDIARGLL 419

Query: 429 KLATHVERRLTMGKRGYERVKEIF 452
           K     E      ++G +RV+E +
Sbjct: 420 KAFESEETWSAYQEKGKQRVEERY 443


>pdb|2XA1|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
           Horikoshii (Seleno Derivative)
 pdb|2XA1|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
           Horikoshii (Seleno Derivative)
          Length = 416

 Score = 33.5 bits (75), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 81/382 (21%), Positives = 140/382 (36%), Gaps = 62/382 (16%)

Query: 92  LLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151
           +L  L  LLR +G +  W  I+ P+E   V  +  + +          +G E++    + 
Sbjct: 58  ILHSLVPLLRSIGIEARWFVIEGPTEFFNVTKTFHNAL----------QGNESLKLTEEX 107

Query: 152 DLIVLNTAVAG-KWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMID- 209
             + LN      K++D    + V          +H+ +       Y K  P +    ID 
Sbjct: 108 KELYLNVNRENSKFIDLSSFDYV---------LVHDPQPAALIEFYEKKSPWLWRCHIDL 158

Query: 210 SHVTAEYWKNRTR-----ERLRIKMPDTYVVHLGNSKELME------VAEDNVAKR---V 255
           S    E+W+   R     +R    +P+     L  +K ++       ++E NV  +   +
Sbjct: 159 SSPNREFWEFLRRFVEKYDRYIFHLPEYVQPELDRNKAVIXPPSIDPLSEKNVELKQTEI 218

Query: 256 LREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESXXXXXXXXXXVPSVHAVIIG 315
           LR  + E   V  E  +   ++     KG        ++           +P V  +++G
Sbjct: 219 LR--ILERFDVDPEKPIITQVSRFDPWKG-------IFDVIEIYRKVKEKIPGVQLLLVG 269

Query: 316 ----SDMNAQTKFESELRNYVMQKKIQDRVHFVN-KTLTVAPYLAAIDVLVQNSQAWGEC 370
                D      FE  LR       ++   + +      V  +  A DV++Q S    E 
Sbjct: 270 VXAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQXSIR--EG 327

Query: 371 FGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKL 430
           FG    EA     PV+       G A GG    +V+G TG L     E +    + ++ L
Sbjct: 328 FGLTVTEAXWKGKPVI-------GRAVGGIKFQIVDGETGFLVRDANEAV----EVVLYL 376

Query: 431 ATHVERRLTMGKRGYERVKEIF 452
             H E     G +  ERV++ F
Sbjct: 377 LKHPEVSKEXGAKAKERVRKNF 398


>pdb|3S27|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications
          Length = 816

 Score = 33.5 bits (75), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 9/95 (9%)

Query: 369 ECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGL-LHPV-GKEGITPLAKN 426
           E FG   +EA    LP          T  GG  EI+V+G +G  + P  G +    LA  
Sbjct: 675 EAFGLTVVEAXTCGLPTF-------ATCKGGPAEIIVHGKSGFHIDPYHGDQAADTLADF 727

Query: 427 IVKLATHVERRLTMGKRGYERVKEIFQEHHMAERI 461
             K          + K G +R++E +     ++R+
Sbjct: 728 FTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRL 762


>pdb|1KQF|B Chain B, Formate Dehydrogenase N From E. Coli
 pdb|1KQG|B Chain B, Formate Dehydrogenase N From E. Coli
          Length = 294

 Score = 31.2 bits (69), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 222 RERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNED 270
           +E   +K   T  +H G  KE++E+AE  VAK  L+    E  GV N +
Sbjct: 171 QEPACVKTCPTGAIHFGTKKEMLELAEQRVAK--LKARGYEHAGVYNPE 217


>pdb|2VWS|A Chain A, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
           Aldolase From Escherichia Coli K12
 pdb|2VWS|B Chain B, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
           Aldolase From Escherichia Coli K12
 pdb|2VWS|C Chain C, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
           Aldolase From Escherichia Coli K12
 pdb|2VWT|A Chain A, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
           Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
           Complex
 pdb|2VWT|B Chain B, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
           Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
           Complex
 pdb|2VWT|C Chain C, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
           Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
           Complex
          Length = 267

 Score = 29.3 bits (64), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 1/77 (1%)

Query: 306 VPSVHAVIIG-SDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNS 364
           V  +  V IG +D++A   +     +  +Q+ I+  +  +      A +LA    + Q  
Sbjct: 167 VEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAVAPDMAQQC 226

Query: 365 QAWGECFGRITIEAMAF 381
            AWG  F  + ++ M +
Sbjct: 227 LAWGANFVAVGVDTMLY 243


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,428,798
Number of Sequences: 62578
Number of extensions: 463543
Number of successful extensions: 1049
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1046
Number of HSP's gapped (non-prelim): 17
length of query: 477
length of database: 14,973,337
effective HSP length: 102
effective length of query: 375
effective length of database: 8,590,381
effective search space: 3221392875
effective search space used: 3221392875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)